[2021-02-07 17:35:05,365] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2021-02-07 17:35:05,365] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/yaaminiv/.multiqc_config.yaml [2021-02-07 17:35:05,365] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-02-07 17:35:05,365] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/. [2021-02-07 17:35:10,672] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2021-02-07 17:35:10,672] multiqc [INFO ] This is MultiQC v1.8 [2021-02-07 17:35:10,672] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/. [2021-02-07 17:35:10,673] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore [2021-02-07 17:35:10,673] multiqc [INFO ] Template : default [2021-02-07 17:35:10,673] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2021-02-07 17:35:10,673] multiqc [INFO ] Searching : /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2 [2021-02-07 17:35:10,674] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2021-02-07 17:35:10,674] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmphlimy3dq [2021-02-07 17:35:11,225] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_2_R1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_7_R2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_4_R1_val_1_val_1.fq.gz [2021-02-07 17:35:11,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_2_R1_val_1_val_1_fastqc.html [2021-02-07 17:35:11,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_8_R1_val_1_val_1.fq.gz [2021-02-07 17:35:11,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_3_R2_val_2_val_2.fq.gz [2021-02-07 17:35:11,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_4_R2_val_2_val_2_fastqc.html [2021-02-07 17:35:11,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_3_R1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,273] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_8_R1_val_1_val_1_fastqc.html [2021-02-07 17:35:11,273] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_1_R2_val_2_val_2.fq.gz [2021-02-07 17:35:11,273] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_2_R1_val_1_val_1.fq.gz [2021-02-07 17:35:11,279] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_5_R1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_6_R2_val_2_val_2.fq.gz [2021-02-07 17:35:11,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_5_R1_val_1_val_1_fastqc.html [2021-02-07 17:35:11,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_8_R2_val_2_val_2.fq.gz [2021-02-07 17:35:11,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_3_R1_val_1_val_1_fastqc.html [2021-02-07 17:35:11,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_5_R1_val_1_val_1.fq.gz [2021-02-07 17:35:11,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_3_R2_val_2_val_2_fastqc.html [2021-02-07 17:35:11,302] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_8_R2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,316] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_6_R1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,323] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_7_R2_val_2_val_2_fastqc.html [2021-02-07 17:35:11,328] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_3_R2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,335] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_8_R2_val_2_val_2_fastqc.html [2021-02-07 17:35:11,336] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_1_R1_val_1_val_1.fq.gz [2021-02-07 17:35:11,336] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_2_R2_val_2_val_2_fastqc.html [2021-02-07 17:35:11,341] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_1_R1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,353] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_4_R2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,360] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_4_R1_val_1_val_1_fastqc.html [2021-02-07 17:35:11,366] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_1_R2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_3_R1_val_1_val_1.fq.gz [2021-02-07 17:35:11,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_6_R2_val_2_val_2_fastqc.html [2021-02-07 17:35:11,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_2_R2_val_2_val_2.fq.gz [2021-02-07 17:35:11,374] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_5_R2_val_2_val_2_fastqc.html [2021-02-07 17:35:11,374] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_4_R2_val_2_val_2.fq.gz [2021-02-07 17:35:11,374] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_7_R1_val_1_val_1.fq.gz [2021-02-07 17:35:11,374] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_6_R1_val_1_val_1.fq.gz [2021-02-07 17:35:11,375] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_1_R2_val_2_val_2_fastqc.html [2021-02-07 17:35:11,380] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_2_R2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,387] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_1_R1_val_1_val_1_fastqc.html [2021-02-07 17:35:11,387] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_6_R1_val_1_val_1_fastqc.html [2021-02-07 17:35:11,387] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_7_R2_val_2_val_2.fq.gz [2021-02-07 17:35:11,392] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_8_R1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,404] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_6_R2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_5_R2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,428] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_4_R1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,435] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_5_R2_val_2_val_2.fq.gz [2021-02-07 17:35:11,435] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_7_R1_val_1_val_1_fastqc.html [2021-02-07 17:35:11,440] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_7_R1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,448] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_7_R2_val_2_val_2_val_2.fq.gz [2021-02-07 17:35:11,488] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_2_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_2_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_6_R2_val_2_val_2_val_2.fq.gz [2021-02-07 17:35:11,543] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_1_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,546] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_1_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,608] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_8_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,610] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_8_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,629] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_1_R2_val_2_val_2_val_2.fq.gz [2021-02-07 17:35:11,665] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_4_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_4_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,687] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_5_R2_val_2_val_2_val_2.fq.gz [2021-02-07 17:35:11,687] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_5_R1_val_1_val_1_val_1.fq.gz [2021-02-07 17:35:11,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_7_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,710] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_7_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,738] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_8_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_8_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,800] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_6_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,803] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_6_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,822] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_6_R1_val_1_val_1_val_1.fq.gz [2021-02-07 17:35:11,822] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_3_R2_val_2_val_2_val_2.fq.gz [2021-02-07 17:35:11,858] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_5_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_5_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_1_R1_val_1_val_1_val_1.fq.gz [2021-02-07 17:35:11,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_4_R1_val_1_val_1_val_1.fq.gz [2021-02-07 17:35:11,907] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_4_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,909] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_4_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,940] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_3_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,942] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_3_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:11,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_5_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:11,975] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_5_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:12,025] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_6_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:12,028] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_6_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:12,048] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_3_R1_val_1_val_1_val_1.fq.gz [2021-02-07 17:35:12,048] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_4_R2_val_2_val_2_val_2.fq.gz [2021-02-07 17:35:12,048] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_2_R1_val_1_val_1_val_1.fq.gz [2021-02-07 17:35:12,082] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_3_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:12,085] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_3_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:12,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_7_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:12,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_7_R2_val_2_val_2.fq.gz_trimming_report.txt [2021-02-07 17:35:12,141] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_2_R2_val_2_val_2_val_2.fq.gz [2021-02-07 17:35:12,148] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_1_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:12,150] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_1_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:12,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_8_R2_val_2_val_2_val_2.fq.gz [2021-02-07 17:35:12,197] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_2_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:12,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_2_R1_val_1_val_1.fq.gz_trimming_report.txt [2021-02-07 17:35:12,218] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_7_R1_val_1_val_1_val_1.fq.gz [2021-02-07 17:35:12,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_8_R1_val_1_val_1_val_1.fq.gz [2021-02-07 17:35:15,086] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2021-02-07 17:35:15,088] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2021-02-07 17:35:15,110] multiqc [DEBUG ] No samples found: custom_content [2021-02-07 17:35:15,143] multiqc [DEBUG ] No samples found: conpair [2021-02-07 17:35:15,265] multiqc [DEBUG ] No samples found: peddy [2021-02-07 17:35:15,324] multiqc [DEBUG ] No samples found: methylQA [2021-02-07 17:35:15,341] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-02-07 17:35:15,458] multiqc [DEBUG ] No samples found: qualimap [2021-02-07 17:35:15,499] multiqc [DEBUG ] No samples found: preseq [2021-02-07 17:35:15,531] multiqc [DEBUG ] No samples found: quast [2021-02-07 17:35:15,576] multiqc [DEBUG ] No samples found: qorts [2021-02-07 17:35:15,601] multiqc [DEBUG ] No samples found: rna_seqc [2021-02-07 17:35:15,728] multiqc [DEBUG ] No samples found: rsem [2021-02-07 17:35:15,829] multiqc [DEBUG ] No samples found: rseqc [2021-02-07 17:35:15,852] multiqc [DEBUG ] No samples found: busco [2021-02-07 17:35:15,902] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-02-07 17:35:15,918] multiqc [DEBUG ] No samples found: disambiguate [2021-02-07 17:35:15,959] multiqc [DEBUG ] No samples found: supernova [2021-02-07 17:35:16,070] multiqc [DEBUG ] No samples found: deeptools [2021-02-07 17:35:16,088] multiqc [DEBUG ] No samples found: sargasso [2021-02-07 17:35:16,108] multiqc [DEBUG ] No samples found: verifybamid [2021-02-07 17:35:16,127] multiqc [DEBUG ] No samples found: mirtrace [2021-02-07 17:35:16,139] multiqc [DEBUG ] No samples found: happy [2021-02-07 17:35:16,170] multiqc [DEBUG ] No samples found: homer [2021-02-07 17:35:16,192] multiqc [DEBUG ] No samples found: macs2 [2021-02-07 17:35:16,199] multiqc [DEBUG ] No samples found: theta2 [2021-02-07 17:35:16,227] multiqc [DEBUG ] No samples found: snpeff [2021-02-07 17:35:16,273] multiqc [DEBUG ] No samples found: gatk [2021-02-07 17:35:16,313] multiqc [DEBUG ] No samples found: htseq [2021-02-07 17:35:16,354] multiqc [DEBUG ] No samples found: bcftools [2021-02-07 17:35:16,367] multiqc [DEBUG ] No samples found: featureCounts [2021-02-07 17:35:16,378] multiqc [DEBUG ] No samples found: fgbio [2021-02-07 17:35:16,383] multiqc [DEBUG ] No samples found: dedup [2021-02-07 17:35:16,389] multiqc [DEBUG ] No samples found: damageprofiler [2021-02-07 17:35:16,776] multiqc [DEBUG ] No samples found: biobambam2 [2021-02-07 17:35:16,816] multiqc [DEBUG ] No samples found: mtnucratio [2021-02-07 17:35:16,820] multiqc [DEBUG ] No samples found: picard [2021-02-07 17:35:16,851] multiqc [DEBUG ] No samples found: prokka [2021-02-07 17:35:16,886] multiqc [DEBUG ] No samples found: samblaster [2021-02-07 17:35:17,043] multiqc [DEBUG ] No samples found: samtools [2021-02-07 17:35:17,094] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-02-07 17:35:17,142] multiqc [DEBUG ] No samples found: bamtools [2021-02-07 17:35:17,167] multiqc [DEBUG ] No samples found: jellyfish [2021-02-07 17:35:17,231] multiqc [DEBUG ] No samples found: vcftools [2021-02-07 17:35:17,261] multiqc [DEBUG ] No samples found: longranger [2021-02-07 17:35:17,301] multiqc [DEBUG ] No samples found: stacks [2021-02-07 17:35:17,338] multiqc [DEBUG ] No samples found: bbmap [2021-02-07 17:35:17,395] multiqc [DEBUG ] No samples found: bismark [2021-02-07 17:35:17,404] multiqc [DEBUG ] No samples found: biscuit [2021-02-07 17:35:17,427] multiqc [DEBUG ] No samples found: hicexplorer [2021-02-07 17:35:17,435] multiqc [DEBUG ] No samples found: hicup [2021-02-07 17:35:17,442] multiqc [DEBUG ] No samples found: hicpro [2021-02-07 17:35:17,449] multiqc [DEBUG ] No samples found: salmon [2021-02-07 17:35:17,618] multiqc [DEBUG ] No samples found: kallisto [2021-02-07 17:35:17,640] multiqc [DEBUG ] No samples found: slamdunk [2021-02-07 17:35:17,648] multiqc [DEBUG ] No samples found: star [2021-02-07 17:35:17,692] multiqc [DEBUG ] No samples found: hisat2 [2021-02-07 17:35:17,700] multiqc [DEBUG ] No samples found: tophat [2021-02-07 17:35:17,740] multiqc [DEBUG ] No samples found: bowtie2 [2021-02-07 17:35:17,749] multiqc [DEBUG ] No samples found: bowtie1 [2021-02-07 17:35:17,758] multiqc [DEBUG ] No samples found: kat [2021-02-07 17:35:17,767] multiqc [DEBUG ] No samples found: leehom [2021-02-07 17:35:17,774] multiqc [DEBUG ] No samples found: adapterRemoval [2021-02-07 17:35:17,782] multiqc [DEBUG ] No samples found: clipandmerge [2021-02-07 17:35:17,836] multiqc.modules.cutadapt.cutadapt [INFO ] Found 32 reports [2021-02-07 17:35:17,856] multiqc [DEBUG ] No samples found: flexbar [2021-02-07 17:35:17,862] multiqc [DEBUG ] No samples found: trimmomatic [2021-02-07 17:35:17,888] multiqc [DEBUG ] No samples found: skewer [2021-02-07 17:35:17,894] multiqc [DEBUG ] No samples found: sortmerna [2021-02-07 17:35:17,910] multiqc [DEBUG ] No samples found: biobloomtools [2021-02-07 17:35:17,931] multiqc [DEBUG ] No samples found: fastq_screen [2021-02-07 17:35:17,935] multiqc [DEBUG ] No samples found: afterqc [2021-02-07 17:35:18,012] multiqc [DEBUG ] No samples found: fastp [2021-02-07 17:35:21,391] multiqc.modules.fastqc.fastqc [INFO ] Found 16 reports [2021-02-07 17:35:21,666] multiqc [DEBUG ] No samples found: minionqc [2021-02-07 17:35:21,689] multiqc [DEBUG ] No samples found: mosdepth [2021-02-07 17:35:21,695] multiqc [DEBUG ] No samples found: clusterflow [2021-02-07 17:35:21,699] multiqc [DEBUG ] No samples found: bcl2fastq [2021-02-07 17:35:21,707] multiqc [DEBUG ] No samples found: interop [2021-02-07 17:35:21,735] multiqc [DEBUG ] No samples found: flash [2021-02-07 17:35:21,740] multiqc [DEBUG ] No samples found: seqyclean [2021-02-07 17:35:21,779] multiqc [INFO ] Compressing plot data [2021-02-07 17:35:22,134] multiqc [WARNING] Previous MultiQC output found! Adjusting filenames.. [2021-02-07 17:35:22,134] multiqc [WARNING] Use -f or --force to overwrite existing reports instead [2021-02-07 17:35:22,135] multiqc [INFO ] Report : multiqc_report_4.html [2021-02-07 17:35:22,135] multiqc [INFO ] Data : multiqc_data_4 [2021-02-07 17:35:22,135] multiqc [DEBUG ] Moving data file from '/tmp/tmphlimy3dq/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/multiqc_data_4' [2021-02-07 17:35:22,136] multiqc [DEBUG ] Moving data file from '/tmp/tmphlimy3dq/multiqc_data/multiqc_cutadapt.txt' to '/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/multiqc_data_4' [2021-02-07 17:35:22,137] multiqc [DEBUG ] Moving data file from '/tmp/tmphlimy3dq/multiqc_data/multiqc_fastqc.txt' to '/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/multiqc_data_4' [2021-02-07 17:35:22,138] multiqc [DEBUG ] Moving data file from '/tmp/tmphlimy3dq/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/multiqc_data_4' [2021-02-07 17:35:22,139] multiqc [DEBUG ] Moving data file from '/tmp/tmphlimy3dq/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/multiqc_data_4' [2021-02-07 17:35:22,139] multiqc [DEBUG ] Moving data file from '/tmp/tmphlimy3dq/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/multiqc_data_4' [2021-02-07 17:35:22,591] multiqc [INFO ] MultiQC complete