[2021-02-07 17:11:06,090] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2021-02-07 17:11:06,090] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/yaaminiv/.multiqc_config.yaml [2021-02-07 17:11:06,090] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-02-07 17:11:06,090] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/. [2021-02-07 17:11:11,383] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2021-02-07 17:11:11,383] multiqc [INFO ] This is MultiQC v1.8 [2021-02-07 17:11:11,384] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/. [2021-02-07 17:11:11,384] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore [2021-02-07 17:11:11,384] multiqc [INFO ] Template : default [2021-02-07 17:11:11,384] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2021-02-07 17:11:11,384] multiqc [INFO ] Searching : /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore [2021-02-07 17:11:11,385] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2021-02-07 17:11:11,385] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpufvd_rf9 [2021-02-07 17:11:12,178] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/./multiqc_data [2021-02-07 17:11:12,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_4_R1_val_1_fastqc.html [2021-02-07 17:11:12,341] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_6_R1_val_1.fq.gz [2021-02-07 17:11:12,367] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-1109818.out [2021-02-07 17:11:12,371] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-1109818.out [2021-02-07 17:11:12,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_5_R2_val_2_fastqc.html [2021-02-07 17:11:12,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_6_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:12,487] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_6_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:12,506] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_2_R1_val_1.fq.gz [2021-02-07 17:11:12,506] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: multiqc_report_1.html [2021-02-07 17:11:12,526] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_8_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:12,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_8_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:12,544] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: multiqc_report.html [2021-02-07 17:11:12,544] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_2_R2_val_2_fastqc.html [2021-02-07 17:11:12,584] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_2_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:12,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_2_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:12,605] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_6_R2_val_2_fastqc.html [2021-02-07 17:11:12,634] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_2_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:12,636] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_2_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:12,652] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_3_R2_val_2.fq.gz [2021-02-07 17:11:12,653] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_5_R1_val_1.fq.gz [2021-02-07 17:11:12,653] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_3_R2_val_2_fastqc.html [2021-02-07 17:11:12,653] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_3_R1_val_1_fastqc.html [2021-02-07 17:11:12,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_4_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:12,701] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_4_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:12,714] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_5_R2_val_2.fq.gz [2021-02-07 17:11:12,749] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_1_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:12,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_1_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:12,771] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_6_R2_val_2.fq.gz [2021-02-07 17:11:12,772] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_1_R2_val_2_fastqc.html [2021-02-07 17:11:12,772] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_3_R1_val_1.fq.gz [2021-02-07 17:11:12,772] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: multiqc_report_2.html [2021-02-07 17:11:12,824] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_7_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:12,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_7_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:12,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-1076838.out [2021-02-07 17:11:12,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-1076838.out [2021-02-07 17:11:13,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_7_R1_val_1.fq.gz [2021-02-07 17:11:13,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_8_R2_val_2.fq.gz [2021-02-07 17:11:13,016] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_8_R2_val_2_fastqc.html [2021-02-07 17:11:13,016] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_1_R2_val_2.fq.gz [2021-02-07 17:11:13,016] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_8_R1_val_1_fastqc.html [2021-02-07 17:11:13,034] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_3_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:13,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_3_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:13,064] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_1_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:13,065] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_1_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:13,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_2_R1_val_1_fastqc.html [2021-02-07 17:11:13,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_4_R2_val_2.fq.gz [2021-02-07 17:11:13,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_7_R1_val_1_fastqc.html [2021-02-07 17:11:13,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_1_R1_val_1.fq.gz [2021-02-07 17:11:13,098] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_6_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:13,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_6_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:13,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_4_R2_val_2_fastqc.html [2021-02-07 17:11:13,111] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_8_R1_val_1.fq.gz [2021-02-07 17:11:13,111] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_7_R2_val_2.fq.gz [2021-02-07 17:11:13,111] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_7_R2_val_2_fastqc.html [2021-02-07 17:11:13,120] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_2_R2_val_2.fq.gz [2021-02-07 17:11:13,120] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_5_R1_val_1_fastqc.html [2021-02-07 17:11:13,149] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_7_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:13,150] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_7_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:13,179] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_4_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:13,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_4_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:13,226] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_3_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:13,228] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_3_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:13,261] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_8_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:13,263] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_8_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:13,278] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_1_R1_val_1_fastqc.html [2021-02-07 17:11:13,279] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_4_R1_val_1.fq.gz [2021-02-07 17:11:13,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_5_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:13,300] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_5_R2.fq.gz_trimming_report.txt [2021-02-07 17:11:13,314] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3616_6_R1_val_1_fastqc.html [2021-02-07 17:11:13,345] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-1085871.out [2021-02-07 17:11:13,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-1085871.out [2021-02-07 17:11:13,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3616_5_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:13,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3616_5_R1.fq.gz_trimming_report.txt [2021-02-07 17:11:13,579] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: multiqc.log [2021-02-07 17:11:13,580] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: multiqc.log [2021-02-07 17:11:13,619] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: multiqc_data.json [2021-02-07 17:11:13,621] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: multiqc_data.json [2021-02-07 17:11:13,710] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: multiqc_sources.txt [2021-02-07 17:11:13,737] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: multiqc.log [2021-02-07 17:11:13,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: multiqc.log [2021-02-07 17:11:13,794] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: multiqc_data.json [2021-02-07 17:11:13,795] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: multiqc_data.json [2021-02-07 17:11:13,795] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: multiqc_data.json [2021-02-07 17:11:13,795] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: multiqc_data.json [2021-02-07 17:11:13,795] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: multiqc_data.json [2021-02-07 17:11:13,795] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: multiqc_data.json [2021-02-07 17:11:14,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: multiqc_sources.txt [2021-02-07 17:11:22,056] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2021-02-07 17:11:22,153] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2021-02-07 17:11:22,210] multiqc [DEBUG ] No samples found: custom_content [2021-02-07 17:11:22,261] multiqc [DEBUG ] No samples found: conpair [2021-02-07 17:11:22,377] multiqc [DEBUG ] No samples found: peddy [2021-02-07 17:11:22,531] multiqc [DEBUG ] No samples found: methylQA [2021-02-07 17:11:22,563] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-02-07 17:11:22,689] multiqc [DEBUG ] No samples found: qualimap [2021-02-07 17:11:22,744] multiqc [DEBUG ] No samples found: preseq [2021-02-07 17:11:22,825] multiqc [DEBUG ] No samples found: quast [2021-02-07 17:11:22,850] multiqc [DEBUG ] No samples found: qorts [2021-02-07 17:11:22,918] multiqc [DEBUG ] No samples found: rna_seqc [2021-02-07 17:11:23,026] multiqc [DEBUG ] No samples found: rsem [2021-02-07 17:11:23,125] multiqc [DEBUG ] No samples found: rseqc [2021-02-07 17:11:23,146] multiqc [DEBUG ] No samples found: busco [2021-02-07 17:11:23,246] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-02-07 17:11:23,278] multiqc [DEBUG ] No samples found: disambiguate [2021-02-07 17:11:23,308] multiqc [DEBUG ] No samples found: supernova [2021-02-07 17:11:23,436] multiqc [DEBUG ] No samples found: deeptools [2021-02-07 17:11:23,521] multiqc [DEBUG ] No samples found: sargasso [2021-02-07 17:11:23,585] multiqc [DEBUG ] No samples found: verifybamid [2021-02-07 17:11:23,609] multiqc [DEBUG ] No samples found: mirtrace [2021-02-07 17:11:23,675] multiqc [DEBUG ] No samples found: happy [2021-02-07 17:11:23,774] multiqc [DEBUG ] No samples found: homer [2021-02-07 17:11:23,809] multiqc [DEBUG ] No samples found: macs2 [2021-02-07 17:11:23,819] multiqc [DEBUG ] No samples found: theta2 [2021-02-07 17:11:23,917] multiqc [DEBUG ] No samples found: snpeff [2021-02-07 17:11:24,012] multiqc [DEBUG ] No samples found: gatk [2021-02-07 17:11:24,035] multiqc [DEBUG ] No samples found: htseq [2021-02-07 17:11:24,106] multiqc [DEBUG ] No samples found: bcftools [2021-02-07 17:11:24,117] multiqc [DEBUG ] No samples found: featureCounts [2021-02-07 17:11:24,129] multiqc [DEBUG ] No samples found: fgbio [2021-02-07 17:11:24,138] multiqc [DEBUG ] No samples found: dedup [2021-02-07 17:11:24,219] multiqc [DEBUG ] No samples found: damageprofiler [2021-02-07 17:11:24,429] multiqc [DEBUG ] No samples found: biobambam2 [2021-02-07 17:11:24,459] multiqc [DEBUG ] No samples found: mtnucratio [2021-02-07 17:11:24,464] multiqc [DEBUG ] No samples found: picard [2021-02-07 17:11:24,505] multiqc [DEBUG ] No samples found: prokka [2021-02-07 17:11:24,516] multiqc [DEBUG ] No samples found: samblaster [2021-02-07 17:11:24,735] multiqc [DEBUG ] No samples found: samtools [2021-02-07 17:11:24,781] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-02-07 17:11:24,864] multiqc [DEBUG ] No samples found: bamtools [2021-02-07 17:11:24,873] multiqc [DEBUG ] No samples found: jellyfish [2021-02-07 17:11:24,931] multiqc [DEBUG ] No samples found: vcftools [2021-02-07 17:11:24,961] multiqc [DEBUG ] No samples found: longranger [2021-02-07 17:11:24,990] multiqc [DEBUG ] No samples found: stacks [2021-02-07 17:11:25,103] multiqc [DEBUG ] No samples found: bbmap [2021-02-07 17:11:25,208] multiqc [DEBUG ] No samples found: bismark [2021-02-07 17:11:25,257] multiqc [DEBUG ] No samples found: biscuit [2021-02-07 17:11:25,290] multiqc [DEBUG ] No samples found: hicexplorer [2021-02-07 17:11:25,325] multiqc [DEBUG ] No samples found: hicup [2021-02-07 17:11:25,400] multiqc [DEBUG ] No samples found: hicpro [2021-02-07 17:11:25,410] multiqc [DEBUG ] No samples found: salmon [2021-02-07 17:11:25,508] multiqc [DEBUG ] No samples found: kallisto [2021-02-07 17:11:25,544] multiqc [DEBUG ] No samples found: slamdunk [2021-02-07 17:11:25,579] multiqc [DEBUG ] No samples found: star [2021-02-07 17:11:25,620] multiqc [DEBUG ] No samples found: hisat2 [2021-02-07 17:11:25,642] multiqc [DEBUG ] No samples found: tophat [2021-02-07 17:11:25,671] multiqc [DEBUG ] No samples found: bowtie2 [2021-02-07 17:11:25,702] multiqc [DEBUG ] No samples found: bowtie1 [2021-02-07 17:11:25,712] multiqc [DEBUG ] No samples found: kat [2021-02-07 17:11:25,722] multiqc [DEBUG ] No samples found: leehom [2021-02-07 17:11:25,845] multiqc [DEBUG ] No samples found: adapterRemoval [2021-02-07 17:11:25,855] multiqc [DEBUG ] No samples found: clipandmerge [2021-02-07 17:11:25,925] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_1_R2 [2021-02-07 17:11:25,929] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_2_R1 [2021-02-07 17:11:25,932] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_2_R2 [2021-02-07 17:11:25,941] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_4_R1 [2021-02-07 17:11:25,955] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_6_R2 [2021-02-07 17:11:25,958] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_7_R1 [2021-02-07 17:11:25,966] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_8_R2 [2021-02-07 17:11:25,968] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_3_R2 [2021-02-07 17:11:25,970] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_1_R1 [2021-02-07 17:11:25,972] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_6_R1 [2021-02-07 17:11:25,974] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_7_R2 [2021-02-07 17:11:25,976] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_4_R2 [2021-02-07 17:11:25,978] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_3_R1 [2021-02-07 17:11:25,980] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_8_R1 [2021-02-07 17:11:25,982] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_5_R2 [2021-02-07 17:11:26,036] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3616_5_R1 [2021-02-07 17:11:26,037] multiqc.modules.cutadapt.cutadapt [INFO ] Found 48 reports [2021-02-07 17:11:26,061] multiqc [DEBUG ] No samples found: flexbar [2021-02-07 17:11:26,075] multiqc [DEBUG ] No samples found: trimmomatic [2021-02-07 17:11:26,188] multiqc [DEBUG ] No samples found: skewer [2021-02-07 17:11:26,197] multiqc [DEBUG ] No samples found: sortmerna [2021-02-07 17:11:26,249] multiqc [DEBUG ] No samples found: biobloomtools [2021-02-07 17:11:26,285] multiqc [DEBUG ] No samples found: fastq_screen [2021-02-07 17:11:26,324] multiqc [DEBUG ] No samples found: afterqc [2021-02-07 17:11:26,387] multiqc [DEBUG ] No samples found: fastp [2021-02-07 17:11:30,156] multiqc.modules.fastqc.fastqc [INFO ] Found 16 reports [2021-02-07 17:11:30,446] multiqc [DEBUG ] No samples found: minionqc [2021-02-07 17:11:30,499] multiqc [DEBUG ] No samples found: mosdepth [2021-02-07 17:11:30,522] multiqc [DEBUG ] No samples found: clusterflow [2021-02-07 17:11:30,560] multiqc [DEBUG ] No samples found: bcl2fastq [2021-02-07 17:11:30,585] multiqc [DEBUG ] No samples found: interop [2021-02-07 17:11:30,601] multiqc [DEBUG ] No samples found: flash [2021-02-07 17:11:30,626] multiqc [DEBUG ] No samples found: seqyclean [2021-02-07 17:11:30,674] multiqc [INFO ] Compressing plot data [2021-02-07 17:11:31,105] multiqc [WARNING] Previous MultiQC output found! Adjusting filenames.. [2021-02-07 17:11:31,105] multiqc [WARNING] Use -f or --force to overwrite existing reports instead [2021-02-07 17:11:31,105] multiqc [INFO ] Report : multiqc_report_3.html [2021-02-07 17:11:31,105] multiqc [INFO ] Data : multiqc_data_3 [2021-02-07 17:11:31,107] multiqc [DEBUG ] Moving data file from '/tmp/tmpufvd_rf9/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/multiqc_data_3' [2021-02-07 17:11:31,108] multiqc [DEBUG ] Moving data file from '/tmp/tmpufvd_rf9/multiqc_data/multiqc_cutadapt.txt' to '/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/multiqc_data_3' [2021-02-07 17:11:31,109] multiqc [DEBUG ] Moving data file from '/tmp/tmpufvd_rf9/multiqc_data/multiqc_fastqc.txt' to '/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/multiqc_data_3' [2021-02-07 17:11:31,110] multiqc [DEBUG ] Moving data file from '/tmp/tmpufvd_rf9/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/multiqc_data_3' [2021-02-07 17:11:31,111] multiqc [DEBUG ] Moving data file from '/tmp/tmpufvd_rf9/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/multiqc_data_3' [2021-02-07 17:11:31,111] multiqc [DEBUG ] Moving data file from '/tmp/tmpufvd_rf9/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore/multiqc_data_3' [2021-02-07 17:11:32,843] multiqc [INFO ] MultiQC complete