/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_8_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_8_R2_val_2_val_2_val_2.fq.gz
Data processed at 00:59:55 on 2021-02-17
Alignment Stats
Sequence pairs analysed in total
159382736
Paired-end alignments with a unique best hit
99905373
Pairs without alignments under any condition
35222170
Pairs that did not map uniquely
24255193
Genomic sequence context not extractable (edges of chromosomes)
10942
Cytosine Methylation
Total C's analysed
3278700792
Methylated C's in CpG context
49286084
Methylated C's in CHG context
3189822
Methylated C's in CHH context
13482993
Methylated C's in Unknown context
135498
Unmethylated C's in CpG context
388610874
Unmethylated C's in CHG context
591662815
Unmethylated C's in CHH context
2232468204
Unmethylated C's in Unknown context
7848334
Percentage methylation (CpG context)
11.3%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
25050830
original top strand
CTOT
24924272
complementary to original top strand
CTOB
24899415
complementary to original bottom strand
OB
25019914
original bottom strand
Deduplication
Alignments analysed
99894431
Unique alignments
76147582
Duplicates removed
23746849
Duplicated alignments were found at 17756204 different positions
