/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_7_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_7_R2_val_2_val_2_val_2.fq.gz
Data processed at 00:59:55 on 2021-02-17
Alignment Stats
Sequence pairs analysed in total
147518415
Paired-end alignments with a unique best hit
92397854
Pairs without alignments under any condition
33293781
Pairs that did not map uniquely
21826780
Genomic sequence context not extractable (edges of chromosomes)
8730
Cytosine Methylation
Total C's analysed
2987092697
Methylated C's in CpG context
46401363
Methylated C's in CHG context
2864285
Methylated C's in CHH context
12367749
Methylated C's in Unknown context
131339
Unmethylated C's in CpG context
348991413
Unmethylated C's in CHG context
536115981
Unmethylated C's in CHH context
2040351906
Unmethylated C's in Unknown context
7221933
Percentage methylation (CpG context)
11.7%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
23238625
original top strand
CTOT
22873446
complementary to original top strand
CTOB
22955941
complementary to original bottom strand
OB
23321112
original bottom strand
Deduplication
Alignments analysed
92389124
Unique alignments
71112087
Duplicates removed
21277037
Duplicated alignments were found at 16017094 different positions
