/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_6_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_6_R2_val_2_val_2_val_2.fq.gz
Data processed at 00:59:54 on 2021-02-17
Alignment Stats
Sequence pairs analysed in total
191560039
Paired-end alignments with a unique best hit
119684660
Pairs without alignments under any condition
41837372
Pairs that did not map uniquely
30038007
Genomic sequence context not extractable (edges of chromosomes)
12058
Cytosine Methylation
Total C's analysed
3820668638
Methylated C's in CpG context
56568946
Methylated C's in CHG context
3598036
Methylated C's in CHH context
15351455
Methylated C's in Unknown context
160518
Unmethylated C's in CpG context
454902768
Unmethylated C's in CHG context
690584257
Unmethylated C's in CHH context
2599663176
Unmethylated C's in Unknown context
9120689
Percentage methylation (CpG context)
11.1%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
29988260
original top strand
CTOT
29768713
complementary to original top strand
CTOB
29852231
complementary to original bottom strand
OB
30063398
original bottom strand
Deduplication
Alignments analysed
119672602
Unique alignments
87439346
Duplicates removed
32233256
Duplicated alignments were found at 23154708 different positions
