zr3616_5_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 70580872 lines in total Total number of methylation call strings processed: 141161744 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1345267959 Total methylated C's in CpG context: 18961603 Total methylated C's in CHG context: 1249297 Total methylated C's in CHH context: 5492379 Total C to T conversions in CpG context: 158137824 Total C to T conversions in CHG context: 240045901 Total C to T conversions in CHH context: 921380955 C methylated in CpG context: 10.7% C methylated in CHG context: 0.5% C methylated in CHH context: 0.6%