/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_5_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_5_R2_val_2_val_2_val_2.fq.gz
Data processed at 00:59:54 on 2021-02-17
Alignment Stats
Sequence pairs analysed in total
146393061
Paired-end alignments with a unique best hit
91751559
Pairs without alignments under any condition
32179257
Pairs that did not map uniquely
22462245
Genomic sequence context not extractable (edges of chromosomes)
9714
Cytosine Methylation
Total C's analysed
2984206921
Methylated C's in CpG context
42797776
Methylated C's in CHG context
2791881
Methylated C's in CHH context
12059840
Methylated C's in Unknown context
121647
Unmethylated C's in CpG context
354838511
Unmethylated C's in CHG context
537759878
Unmethylated C's in CHH context
2033959035
Unmethylated C's in Unknown context
7141330
Percentage methylation (CpG context)
10.8%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
22931856
original top strand
CTOT
22891689
complementary to original top strand
CTOB
22940535
complementary to original bottom strand
OB
22977765
original bottom strand
Deduplication
Alignments analysed
91741845
Unique alignments
70580872
Duplicates removed
21160973
Duplicated alignments were found at 15829462 different positions
