zr3616_4_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 91149672 lines in total Total number of methylation call strings processed: 182299344 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1779281695 Total methylated C's in CpG context: 26627845 Total methylated C's in CHG context: 1652985 Total methylated C's in CHH context: 7054416 Total C to T conversions in CpG context: 208499323 Total C to T conversions in CHG context: 318667466 Total C to T conversions in CHH context: 1216779660 C methylated in CpG context: 11.3% C methylated in CHG context: 0.5% C methylated in CHH context: 0.6%