/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_4_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_4_R2_val_2_val_2_val_2.fq.gz
Data processed at 00:59:54 on 2021-02-17
Alignment Stats
Sequence pairs analysed in total
195404524
Paired-end alignments with a unique best hit
122456913
Pairs without alignments under any condition
43400673
Pairs that did not map uniquely
29546938
Genomic sequence context not extractable (edges of chromosomes)
12448
Cytosine Methylation
Total C's analysed
4026686552
Methylated C's in CpG context
61517114
Methylated C's in CHG context
3775942
Methylated C's in CHH context
15774060
Methylated C's in Unknown context
162452
Unmethylated C's in CpG context
476713646
Unmethylated C's in CHG context
729091776
Unmethylated C's in CHH context
2739814014
Unmethylated C's in Unknown context
9663311
Percentage methylation (CpG context)
11.4%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
30724486
original top strand
CTOT
30515064
complementary to original top strand
CTOB
30491942
complementary to original bottom strand
OB
30712973
original bottom strand
Deduplication
Alignments analysed
122444465
Unique alignments
91149672
Duplicates removed
31294793
Duplicated alignments were found at 22894892 different positions
