/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_3_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_3_R2_val_2_val_2_val_2.fq.gz
Data processed at 00:59:54 on 2021-02-17
Alignment Stats
Sequence pairs analysed in total
184625873
Paired-end alignments with a unique best hit
115959769
Pairs without alignments under any condition
40261338
Pairs that did not map uniquely
28404766
Genomic sequence context not extractable (edges of chromosomes)
11248
Cytosine Methylation
Total C's analysed
3698776401
Methylated C's in CpG context
55232294
Methylated C's in CHG context
3406696
Methylated C's in CHH context
14523371
Methylated C's in Unknown context
153488
Unmethylated C's in CpG context
433812436
Unmethylated C's in CHG context
664656714
Unmethylated C's in CHH context
2527144890
Unmethylated C's in Unknown context
8861712
Percentage methylation (CpG context)
11.3%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
29066834
original top strand
CTOT
28943533
complementary to original top strand
CTOB
28910221
complementary to original bottom strand
OB
29027933
original bottom strand
Deduplication
Alignments analysed
115948521
Unique alignments
85875946
Duplicates removed
30072575
Duplicated alignments were found at 21859669 different positions
