/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_2_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_2_R2_val_2_val_2_val_2.fq.gz
Data processed at 00:59:54 on 2021-02-17
Alignment Stats
Sequence pairs analysed in total
164737166
Paired-end alignments with a unique best hit
103087584
Pairs without alignments under any condition
37247825
Pairs that did not map uniquely
24401757
Genomic sequence context not extractable (edges of chromosomes)
11462
Cytosine Methylation
Total C's analysed
3444022931
Methylated C's in CpG context
50751840
Methylated C's in CHG context
3314562
Methylated C's in CHH context
13873691
Methylated C's in Unknown context
137554
Unmethylated C's in CpG context
412119007
Unmethylated C's in CHG context
621569062
Unmethylated C's in CHH context
2342394769
Unmethylated C's in Unknown context
8332795
Percentage methylation (CpG context)
11.0%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
25819132
original top strand
CTOT
25684248
complementary to original top strand
CTOB
25715010
complementary to original bottom strand
OB
25857732
original bottom strand
Deduplication
Alignments analysed
103076122
Unique alignments
77324772
Duplicates removed
25751350
Duplicated alignments were found at 18937302 different positions
