/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_1_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_1_R2_val_2_val_2_val_2.fq.gz
Data processed at 00:59:54 on 2021-02-17
Alignment Stats
Sequence pairs analysed in total
158456630
Paired-end alignments with a unique best hit
100061777
Pairs without alignments under any condition
34906989
Pairs that did not map uniquely
23487864
Genomic sequence context not extractable (edges of chromosomes)
11067
Cytosine Methylation
Total C's analysed
3360381662
Methylated C's in CpG context
50113396
Methylated C's in CHG context
3198912
Methylated C's in CHH context
13552022
Methylated C's in Unknown context
135286
Unmethylated C's in CpG context
403993682
Unmethylated C's in CHG context
608483348
Unmethylated C's in CHH context
2281040302
Unmethylated C's in Unknown context
8058665
Percentage methylation (CpG context)
11.0%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
24950391
original top strand
CTOT
25071053
complementary to original top strand
CTOB
25068429
complementary to original bottom strand
OB
24960837
original bottom strand
Deduplication
Alignments analysed
100050710
Unique alignments
75587481
Duplicates removed
24463229
Duplicated alignments were found at 18108957 different positions
