Highlight Samples

Regex mode off

    Rename Samples

    Click here for bulk input.

    Paste two columns of a tab-delimited table here (eg. from Excel).

    First column should be the old name, second column the new name.

    Regex mode off

      Show / Hide Samples

      Regex mode off

        Export Plots

        px
        px
        X

        Download the raw data used to create the plots in this report below:

        Note that additional data was saved in multiqc_data when this report was generated.

        Choose Plots

        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Save Settings

        You can save the toolbox settings for this report to the browser.

        Load Settings

        Choose a saved report profile from the dropdown box below:

        About MultiQC

        This report was generated using MultiQC, version 1.0.dev0

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2021-02-21, 15:02 based on data in:

        General Statistics

        Showing 8/8 rows and 6/8 columns.
        Sample Name% mCpG% mCHG% mCHHM C's% Dups% Aligned
        zr3616_1_R1_val_1_val_1_val_1
        10.9%
        0.5%
        0.6%
        1535.8
        24.4%
        63.1%
        zr3616_2_R1_val_1_val_1_val_1
        10.8%
        0.5%
        0.6%
        1556.1
        25.0%
        62.6%
        zr3616_3_R1_val_1_val_1_val_1
        11.2%
        0.5%
        0.6%
        1587.5
        25.9%
        62.8%
        zr3616_4_R1_val_1_val_1_val_1
        11.3%
        0.5%
        0.6%
        1779.3
        25.6%
        62.7%
        zr3616_5_R1_val_1_val_1_val_1
        10.7%
        0.5%
        0.6%
        1345.3
        23.1%
        62.7%
        zr3616_6_R1_val_1_val_1_val_1
        11.0%
        0.5%
        0.6%
        1613.0
        26.9%
        62.5%
        zr3616_7_R1_val_1_val_1_val_1
        11.6%
        0.5%
        0.6%
        1370.9
        23.0%
        62.6%
        zr3616_8_R1_val_1_val_1_val_1
        11.2%
        0.5%
        0.6%
        1487.2
        23.8%
        62.7%

        Bismark

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.

        Alignment Rates

        loading..

        Deduplication

        loading..

        Strand Alignment

        loading..

        Cytosine Methylation

        loading..

        M-Bias

        This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.

        loading..

        MultiQC v1.0.dev0 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, chroma.js, FileSaver.js and clipboard.js.