File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
zr3616_1_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	158456630	100050710	34906989	23487864	11067	24463229	75587481	1535805923	22355264	182468128	1443507	274799054	6257301	1048482669
zr3616_2_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	164737166	103076122	37247825	24401757	11462	25751350	77324772	1556124219	22388639	184146364	1477588	277529881	6334575	1064247172
zr3616_3_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	184625873	115948521	40261338	28404766	11248	30072575	85875946	1587542268	23273152	185004883	1449594	282666375	6348955	1088799309
zr3616_4_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	195404524	122444465	43400673	29546938	12448	31294793	91149672	1779281695	26627845	208499323	1652985	318667466	7054416	1216779660
zr3616_5_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	146393061	91741845	32179257	22462245	9714	21160973	70580872	1345267959	18961603	158137824	1249297	240045901	5492379	921380955
zr3616_6_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	191560039	119672602	41837372	30038007	12058	32233256	87439346	1612993703	23485488	190223768	1508024	288713351	6600387	1102462685
zr3616_7_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	147518415	92389124	33293781	21826780	8730	21277037	71112087	1370876734	20893662	158626227	1301565	243508676	5719406	940827198
zr3616_8_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	159382736	99894431	35222170	24255193	10942	23746849	76147582	1487174194	21924067	174580678	1433325	265499317	6168440	1017568367