/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_8_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_8_R2_val_2_val_2_val_2.fq.gz
Data processed at 02:09:07 on 2021-03-22
Alignment Stats
Sequence pairs analysed in total
159382736
Paired-end alignments with a unique best hit
98194103
Pairs without alignments under any condition
30246691
Pairs that did not map uniquely
30941942
Genomic sequence context not extractable (edges of chromosomes)
334
Cytosine Methylation
Total C's analysed
3240697758
Methylated C's in CpG context
48308489
Methylated C's in CHG context
3121497
Methylated C's in CHH context
13021467
Methylated C's in Unknown context
133034
Unmethylated C's in CpG context
394826323
Unmethylated C's in CHG context
583925074
Unmethylated C's in CHH context
2197494908
Unmethylated C's in Unknown context
7570756
Percentage methylation (CpG context)
10.9%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
24591855
original top strand
CTOT
24474256
complementary to original top strand
CTOB
24506903
complementary to original bottom strand
OB
24620755
original bottom strand
Deduplication
Alignments analysed
98193769
Unique alignments
75170623
Duplicates removed
23023146
Duplicated alignments were found at 17320875 different positions