zr3616_7_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 70450786 lines in total Total number of methylation call strings processed: 140901572 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1365975623 Total methylated C's in CpG context: 20679742 Total methylated C's in CHG context: 1281705 Total methylated C's in CHH context: 5585942 Total C to T conversions in CpG context: 159721711 Total C to T conversions in CHG context: 241903748 Total C to T conversions in CHH context: 936802775 C methylated in CpG context: 11.5% C methylated in CHG context: 0.5% C methylated in CHH context: 0.6%