/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_7_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_7_R2_val_2_val_2_val_2.fq.gz
Data processed at 02:09:07 on 2021-03-22
Alignment Stats
Sequence pairs analysed in total
147518415
Paired-end alignments with a unique best hit
91034855
Pairs without alignments under any condition
28400781
Pairs that did not map uniquely
28082779
Genomic sequence context not extractable (edges of chromosomes)
480
Cytosine Methylation
Total C's analysed
2954641746
Methylated C's in CpG context
45632004
Methylated C's in CHG context
2798783
Methylated C's in CHH context
11876787
Methylated C's in Unknown context
128658
Unmethylated C's in CpG context
352122839
Unmethylated C's in CHG context
529254237
Unmethylated C's in CHH context
2012957096
Unmethylated C's in Unknown context
6961644
Percentage methylation (CpG context)
11.5%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
22981945
original top strand
CTOT
22622460
complementary to original top strand
CTOB
22527011
complementary to original bottom strand
OB
22902959
original bottom strand
Deduplication
Alignments analysed
91034375
Unique alignments
70450786
Duplicates removed
20583589
Duplicated alignments were found at 15677434 different positions
