/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_6_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_6_R2_val_2_val_2_val_2.fq.gz
Data processed at 02:09:07 on 2021-03-22
Alignment Stats
Sequence pairs analysed in total
191560039
Paired-end alignments with a unique best hit
117720000
Pairs without alignments under any condition
35348777
Pairs that did not map uniquely
38491262
Genomic sequence context not extractable (edges of chromosomes)
395
Cytosine Methylation
Total C's analysed
3775636196
Methylated C's in CpG context
55725063
Methylated C's in CHG context
3515562
Methylated C's in CHH context
14731836
Methylated C's in Unknown context
156635
Unmethylated C's in CpG context
459604112
Unmethylated C's in CHG context
681604014
Unmethylated C's in CHH context
2560455609
Unmethylated C's in Unknown context
8711916
Percentage methylation (CpG context)
10.8%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
29538900
original top strand
CTOT
29329081
complementary to original top strand
CTOB
29318937
complementary to original bottom strand
OB
29532687
original bottom strand
Deduplication
Alignments analysed
117719605
Unique alignments
86593544
Duplicates removed
31126061
Duplicated alignments were found at 22657982 different positions