/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_5_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_5_R2_val_2_val_2_val_2.fq.gz
Data processed at 02:09:07 on 2021-03-22
Alignment Stats
Sequence pairs analysed in total
146393061
Paired-end alignments with a unique best hit
90252987
Pairs without alignments under any condition
27270882
Pairs that did not map uniquely
28869192
Genomic sequence context not extractable (edges of chromosomes)
323
Cytosine Methylation
Total C's analysed
2949353611
Methylated C's in CpG context
42197405
Methylated C's in CHG context
2737128
Methylated C's in CHH context
11517755
Methylated C's in Unknown context
118374
Unmethylated C's in CpG context
358332480
Unmethylated C's in CHG context
530661176
Unmethylated C's in CHH context
2003907667
Unmethylated C's in Unknown context
6879487
Percentage methylation (CpG context)
10.5%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
22574512
original top strand
CTOT
22529452
complementary to original top strand
CTOB
22556151
complementary to original bottom strand
OB
22592549
original bottom strand
Deduplication
Alignments analysed
90252664
Unique alignments
69896131
Duplicates removed
20356533
Duplicated alignments were found at 15466255 different positions
