/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_4_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_4_R2_val_2_val_2_val_2.fq.gz
Data processed at 02:09:06 on 2021-03-22
Alignment Stats
Sequence pairs analysed in total
195404524
Paired-end alignments with a unique best hit
120720568
Pairs without alignments under any condition
36680613
Pairs that did not map uniquely
38003343
Genomic sequence context not extractable (edges of chromosomes)
496
Cytosine Methylation
Total C's analysed
3990533393
Methylated C's in CpG context
60367388
Methylated C's in CHG context
3685754
Methylated C's in CHH context
15262451
Methylated C's in Unknown context
160090
Unmethylated C's in CpG context
484457471
Unmethylated C's in CHG context
721350336
Unmethylated C's in CHH context
2705409993
Unmethylated C's in Unknown context
9285240
Percentage methylation (CpG context)
11.1%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
30293051
original top strand
CTOT
30082152
complementary to original top strand
CTOB
30060417
complementary to original bottom strand
OB
30284452
original bottom strand
Deduplication
Alignments analysed
120720072
Unique alignments
90381383
Duplicates removed
30338689
Duplicated alignments were found at 22405429 different positions
