/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_3_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_3_R2_val_2_val_2_val_2.fq.gz
Data processed at 02:09:06 on 2021-03-22
Alignment Stats
Sequence pairs analysed in total
184625873
Paired-end alignments with a unique best hit
113619362
Pairs without alignments under any condition
34374786
Pairs that did not map uniquely
36631725
Genomic sequence context not extractable (edges of chromosomes)
385
Cytosine Methylation
Total C's analysed
3641280967
Methylated C's in CpG context
54179448
Methylated C's in CHG context
3329156
Methylated C's in CHH context
13990966
Methylated C's in Unknown context
147938
Unmethylated C's in CpG context
436869326
Unmethylated C's in CHG context
653627897
Unmethylated C's in CHH context
2479284174
Unmethylated C's in Unknown context
8508477
Percentage methylation (CpG context)
11.0%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
28443731
original top strand
CTOT
28325206
complementary to original top strand
CTOB
28359599
complementary to original bottom strand
OB
28490441
original bottom strand
Deduplication
Alignments analysed
113618977
Unique alignments
84790314
Duplicates removed
28828663
Duplicated alignments were found at 21300686 different positions
