/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_2_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_2_R2_val_2_val_2_val_2.fq.gz
Data processed at 02:09:06 on 2021-03-22
Alignment Stats
Sequence pairs analysed in total
164737166
Paired-end alignments with a unique best hit
101710771
Pairs without alignments under any condition
31882668
Pairs that did not map uniquely
31143727
Genomic sequence context not extractable (edges of chromosomes)
314
Cytosine Methylation
Total C's analysed
3417738104
Methylated C's in CpG context
50246857
Methylated C's in CHG context
3247270
Methylated C's in CHH context
13382287
Methylated C's in Unknown context
135691
Unmethylated C's in CpG context
419182139
Unmethylated C's in CHG context
616541822
Unmethylated C's in CHH context
2315137729
Unmethylated C's in Unknown context
8087053
Percentage methylation (CpG context)
10.7%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
25459242
original top strand
CTOT
25336051
complementary to original top strand
CTOB
25377276
complementary to original bottom strand
OB
25537888
original bottom strand
Deduplication
Alignments analysed
101710457
Unique alignments
76654951
Duplicates removed
25055506
Duplicated alignments were found at 18556896 different positions
