/gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_1_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Manchester/analyses/trimgalore-2/poly-G/zr3616_1_R2_val_2_val_2_val_2.fq.gz
Data processed at 02:09:06 on 2021-03-22
Alignment Stats
Sequence pairs analysed in total
158456630
Paired-end alignments with a unique best hit
98315254
Pairs without alignments under any condition
29699917
Pairs that did not map uniquely
30441459
Genomic sequence context not extractable (edges of chromosomes)
408
Cytosine Methylation
Total C's analysed
3319534389
Methylated C's in CpG context
49312443
Methylated C's in CHG context
3125143
Methylated C's in CHH context
12997263
Methylated C's in Unknown context
131492
Unmethylated C's in CpG context
409004180
Unmethylated C's in CHG context
600629677
Unmethylated C's in CHH context
2244465683
Unmethylated C's in Unknown context
7790466
Percentage methylation (CpG context)
10.8%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
24530010
original top strand
CTOT
24630957
complementary to original top strand
CTOB
24634899
complementary to original bottom strand
OB
24518980
original bottom strand
Deduplication
Alignments analysed
98314846
Unique alignments
74780342
Duplicates removed
23534504
Duplicated alignments were found at 17674069 different positions
