contrast estimate SE df t.ratio p.value model A - B -0.0595450457050002 0.0191570573743309 4 -3.10825637473876 0.0359324980624146 CDS A - C -0.364896349444512 0.0184319629130223 4 -19.7969337919355 0.000112240437425932 CDS B - C -0.305351303739512 0.018253473036043 4 -16.7283948176092 0.000112240437425932 CDS A - B 0.166221305227443 0.0991803896586808 4 1.67594930610252 0.169056529381416 Introns A - C 0.34951246152301 0.102634368287641 4 3.40541348238703 0.0814250626217101 Introns B - C 0.183291156295567 0.104827780279011 4 1.74849792495573 0.169056529381416 Introns A - B -0.0355048049008398 0.0451255442341138 4 -0.786800591625864 0.475396776969854 UpstreamFlanks A - C 0.167005186190263 0.0469713109346512 4 3.55547211408703 0.0355229914868949 UpstreamFlanks B - C 0.202509991091103 0.0466799391167197 4 4.33826596441659 0.0355229914868949 UpstreamFlanks A - B 0.0607741383398505 0.016446575387569 4 3.69524578264397 0.020922335744199 DownstreamFlanks A - C 0.144474120490961 0.0167394650894163 4 8.63074893488121 0.00297287427490039 DownstreamFlanks B - C 0.0836999821511107 0.0169340828938024 4 4.94269354154063 0.0117026465529327 DownstreamFlanks A - B -0.0898415702844654 0.0804422469272636 4 -1.11684560931895 0.556018516196804 Intergenic A - C -0.0810992616466532 0.0804929050385962 4 -1.00753304415794 0.556018516196804 Intergenic B - C 0.00874230863781227 0.0799834413641175 4 0.109301481515576 0.918227282998292 Intergenic