contrast estimate SE df t.ratio p.value model A - B 0.484072649779071 0.0360008683769826 4 13.4461381517276 0.000265464010917339 CDS A - C -0.200648271097573 0.031217181348181 4 -6.42749480997792 0.0030127358149356 CDS B - C -0.684720920876644 0.034978420433801 4 -19.5755243485773 0.000120476092038761 CDS A - B -0.00915336597112433 0.0246086471242331 4 -0.371957301224847 0.728791238993383 Introns A - C 0.241332147546731 0.0251517217194899 4 9.59505477351574 0.000989101798256057 Introns B - C 0.250485513517855 0.0251358604700894 4 9.96526511658205 0.000989101798256057 Introns A - B -0.0134657470916726 0.0155274442937189 4 -0.867222373299368 0.434747062902108 UpstreamFlanks A - C 0.043140862076801 0.0157220534914904 4 2.74397120580661 0.0775407854476106 UpstreamFlanks B - C 0.0566066091684737 0.0156769775566922 4 3.61081139293393 0.0676210446641888 UpstreamFlanks A - B 0.0455922914399437 0.0109757949529961 4 4.15389424048034 0.0213229875246378 DownstreamFlanks A - C 0.0488625850780677 0.0109839710094196 4 4.44853551016881 0.0213229875246378 DownstreamFlanks B - C 0.00327029363812401 0.0110945980875178 4 0.294764498211371 0.782839142272069 DownstreamFlanks A - B -0.17287970793395 0.0329995956035204 4 -5.23884322738509 0.0179569844909969 Intergenic A - C -0.144309701236656 0.0330254338938889 4 -4.36965345255796 0.0179569844909969 Intergenic B - C 0.0285700066972934 0.0328123405072436 4 0.870709198296486 0.433049828090574 Intergenic