C22430 flankbed promoter 230 262 . + . ID=CGI_10000081; C22430 WUBlastX DNA_TcMar-Tc2 230 493 60 + . . C23316 flankbed promoter 1112 1675 . - . ID=CGI_10000116; C23316 WUBlastX LTR_Ngaro 929 1675 117 - . . C23316 flankbed promoter 1112 1489 . - . ID=CGI_10000116; C23316 WUBlastX LTR_Ngaro 953 1489 157 - . . C23734 flankbed promoter 713 724 . - . ID=CGI_10000149; C23734 WUBlastX LTR_Gypsy 23 724 246 - . . C23734 flankbed promoter 713 964 . - . ID=CGI_10000149; C23734 WUBlastX LTR_Gypsy 26 964 217 - . . C24608 flankbed promoter 1276 1998 . - . ID=CGI_10000201; C24608 WUBlastX DNA_En-Spm 1276 2823 1086 - . . C25496 flankbed promoter 1457 1753 . + . ID=CGI_10000243; C25496 WUBlastX LINE_L1 1457 1753 124 + . . C25496 flankbed promoter 853 1033 . + . ID=CGI_10000243; C25496 WUBlastX LINE_CR1 353 1033 105 + . . C26320 flankbed promoter 2710 2739 . + . ID=CGI_10000297; C26320 WUBlastX LINE_L2 2710 2964 75 + . . C26472 flankbed promoter 536 730 . - . ID=CGI_10000305; C26472 WUBlastX LTR_Pao 173 730 39 - . . C26472 flankbed promoter 536 850 . - . ID=CGI_10000305; C26472 WUBlastX LTR_Gypsy 359 850 48 - . . C26534 flankbed promoter 3441 3965 . - . ID=CGI_10000312; C26534 WUBlastX DNA_PiggyBac 3441 3992 215 - . . C26654 flankbed promoter 2643 2680 . - . ID=CGI_10000318; C26654 TRF Tandem_Repeat 2643 2680 51 + . . C26654 flankbed promoter 2642 2683 . - . ID=CGI_10000318; C26654 TRF Tandem_Repeat 2642 2683 68 + . . C26674 flankbed promoter 71 693 . + . ID=CGI_10000320; C26674 WUBlastX LINE_L2-Hydra 1 693 119 + . . C26674 flankbed promoter 71 582 . + . ID=CGI_10000320; C26674 WUBlastX LINE_RTE-X 4 582 195 + . . C27100 flankbed promoter 2356 2373 . + . ID=CGI_10000343; C27100 WUBlastX DNA_IS4EU 2356 2553 61 + . . C27638 flankbed promoter 4475 4544 . - . ID=CGI_10000372; C27638 WUBlastX LTR_Gypsy 4475 4858 339 + . . C27694 flankbed promoter 3021 3140 . - . ID=CGI_10000376; C27694 WUBlastX DNA_Maverick 2694 3140 230 - . . C27694 flankbed promoter 3021 3227 . - . ID=CGI_10000376; C27694 WUBlastX DNA_Maverick 2709 3227 54 - . . C28030 flankbed promoter 2594 3163 . - . ID=CGI_10000400; C28030 WUBlastX DNA_Maverick 2594 3163 382 - . . C28030 flankbed promoter 2594 3163 . + . ID=CGI_10000401; C28030 WUBlastX DNA_Maverick 2594 3163 382 - . . C28218 flankbed promoter 4368 5288 . - . ID=CGI_10000410; C28218 WUBlastX LTR_Pao 3906 5288 1273 - . . C28218 flankbed promoter 5316 5367 . - . ID=CGI_10000410; C28218 WUBlastX LTR_Pao 5316 5369 36 - . . C28258 flankbed promoter 2581 2749 . - . ID=CGI_10000413; C28258 WUBlastX LINE_CR1 2581 2967 158 - . . C28258 flankbed promoter 2581 2967 . + . ID=CGI_10000414; C28258 WUBlastX LINE_CR1 2581 2967 158 - . . C28258 flankbed promoter 3216 3416 . + . ID=CGI_10000414; C28258 WUBlastX LINE_L1-Tx1 3216 3584 49 + . . C28258 flankbed promoter 3216 3416 . + . ID=CGI_10000414; C28258 WUBlastX LINE_I 3216 3872 36 + . . C28348 flankbed promoter 4200 4806 . - . ID=CGI_10000423; C28348 WUBlastX LTR_Gypsy 4200 5474 1191 + . . C28632 flankbed promoter 3405 4097 . + . ID=CGI_10000454; C28632 WUBlastX LINE_L1 3405 4097 58 + . . C28632 flankbed promoter 3513 4220 . + . ID=CGI_10000454; C28632 WUBlastX LINE_L1 3513 4220 122 + . . C28722 flankbed promoter 1 45 . + . ID=CGI_10000462; C28722 TRF Tandem_Repeat 1 45 90 + . . C29202 flankbed promoter 2073 2162 . + . ID=CGI_10000501; C29202 WUBlastX DNA_IS4EU 2073 2162 52 - . . C29202 flankbed promoter 2459 2668 . + . ID=CGI_10000501; C29202 WUBlastX DNA_IS4EU 2459 2668 64 - . . C29244 flankbed promoter 584 904 . + . ID=CGI_10000509; C29244 WUBlastX DNA_TcMar-Marin 584 904 110 + . . C29244 flankbed promoter 231 501 . + . ID=CGI_10000509; C29244 WUBlastX DNA_TcMar-Marin 118 501 72 + . . C29244 flankbed promoter 765 1043 . + . ID=CGI_10000509; C29244 WUBlastX DNA_TcMar-Marin 765 1043 27 + . . C29450 flankbed promoter 4944 5095 . - . ID=CGI_10000535; C29450 WUBlastX LINE_Penelope 4944 5384 250 + . . C29576 flankbed promoter 2095 2304 . - . ID=CGI_10000547; C29576 WUBlastX LTR_DIRS 2095 2304 20 - . . C30118 flankbed promoter 284 463 . + . ID=CGI_10000594; C30118 WUBlastX LINE_CR1-L2 284 463 117 + . . C30118 flankbed promoter 323 632 . + . ID=CGI_10000594; C30118 WUBlastX LINE_Rex-Babar 323 751 32 + . . C30140 flankbed promoter 1794 1967 . + . ID=CGI_10000597; C30140 WUBlastX LTR_Gypsy 1794 2000 33 + . . C30140 flankbed promoter 1842 1967 . + . ID=CGI_10000597; C30140 WUBlastX LTR_Gypsy 1842 2024 40 + . . C30144 flankbed promoter 4589 4616 . - . ID=CGI_10000599; C30144 TRF Tandem_Repeat 4589 4616 56 + . . C30144 flankbed promoter 4589 4616 . - . ID=CGI_10000600; C30144 TRF Tandem_Repeat 4589 4616 56 + . . C30186 flankbed promoter 5643 6098 . - . ID=CGI_10000605; C30186 WUBlastX LINE_RTE-X 5643 7520 961 + . . C30186 flankbed promoter 5238 6098 . - . ID=CGI_10000605; C30186 WUBlastX LINE_RTE-X 5238 7511 804 + . . C30216 flankbed promoter 3233 3258 . - . ID=CGI_10000606; C30216 WUBlastX DNA_hAT-Tip100 3233 3562 90 + . . C30216 flankbed promoter 3161 3258 . - . ID=CGI_10000606; C30216 WUBlastX DNA_hAT-Tip100 3161 3427 56 + . . C30216 flankbed promoter 3212 3258 . - . ID=CGI_10000606; C30216 WUBlastX DNA_hAT-Tip100 3212 3445 177 + . . C30458 flankbed promoter 6104 7010 . - . ID=CGI_10000625; C30458 WUBlastX LINE_L1-Tx1 6104 7870 121 - . . C30458 flankbed promoter 6386 7010 . - . ID=CGI_10000625; C30458 WUBlastX LINE_L1-Tx1 6386 7870 312 - . . C30500 flankbed promoter 6922 7026 . - . ID=CGI_10000629; C30500 WUBlastX DNA_IS4EU 6631 7026 79 - . . C30632 flankbed promoter 687 804 . + . ID=CGI_10000645; C30632 WUBlastX DNA_Zator 687 845 47 + . . C30694 flankbed promoter 6163 6483 . - . ID=CGI_10000657; C30694 WUBlastX LTR_Gypsy 6163 6483 21 - . . C30694 flankbed promoter 6553 7153 . - . ID=CGI_10000657; C30694 WUBlastX LTR_Gypsy 6553 7641 256 - . . C30694 flankbed promoter 6790 7153 . - . ID=CGI_10000657; C30694 WUBlastX LTR_Gypsy-Cigr 6790 8247 955 - . . C30816 flankbed promoter 7156 7239 . - . ID=CGI_10000677; C30816 WUBlastX LINE_RTE-X 7156 7239 37 + . . C30816 flankbed promoter 7266 7390 . - . ID=CGI_10000677; C30816 WUBlastX LINE_RTE-X 7266 7523 53 + . . C30816 flankbed promoter 7150 7254 . - . ID=CGI_10000677; C30816 WUBlastX LINE_RTE-X 7150 7254 33 + . . C30816 flankbed promoter 6848 7147 . - . ID=CGI_10000677; C30816 WUBlastX LINE_RTE-X 6848 7147 160 + . . C31096 flankbed promoter 6701 7126 . - . ID=CGI_10000705; C31096 WUBlastX LTR_Ngaro 6632 7126 210 - . . C31096 flankbed promoter 6701 7393 . - . ID=CGI_10000705; C31096 WUBlastX LTR_Ngaro 6578 7393 156 - . . C31130 flankbed promoter 8142 8355 . - . ID=CGI_10000707; C31130 TRF Tandem_Repeat 8142 8355 65 + . . C31466 flankbed promoter 3993 4391 . - . ID=CGI_10000752; C31466 WUBlastX RC_Helitron 3993 4391 49 - . . C31572 flankbed promoter 1 70 . + . ID=CGI_10000770; C31572 TRF Tandem_Repeat 1 70 133 + . . C31902 flankbed promoter 2741 2796 . - . ID=CGI_10000813; C31902 TRF Tandem_Repeat 2741 2796 112 + . . C31910 flankbed promoter 9512 10075 . - . ID=CGI_10000814; C31910 WUBlastX LTR_DIRS 9512 10396 388 - . . C31988 flankbed promoter 1912 2378 . + . ID=CGI_10000822; C31988 WUBlastX LINE_L1-Tx1 6 2378 1182 - . . C31988 flankbed promoter 2522 2605 . + . ID=CGI_10000822; C31988 WUBlastX LINE_L1 2522 2605 20 - . . C32216 flankbed promoter 3340 3394 . + . ID=CGI_10000865; C32216 TRF Tandem_Repeat 3340 3394 83 + . . C32216 flankbed promoter 3198 3249 . + . ID=CGI_10000865; C32216 WUBlastX LINE_R1 3097 3249 22 + . . C32222 flankbed promoter 10816 10853 . - . ID=CGI_10000866; C32222 TRF Tandem_Repeat 10816 11074 473 + . . C32240 flankbed promoter 9416 9608 . - . ID=CGI_10000869; C32240 WUBlastX LTR_DIRS 9416 10744 468 + . . C32270 flankbed promoter 10827 11129 . - . ID=CGI_10000872; C32270 WUBlastX RC_Helitron 10827 11129 72 - . . C32270 flankbed promoter 10827 11201 . - . ID=CGI_10000872; C32270 WUBlastX RC_Helitron 10827 11201 63 - . . C32272 flankbed promoter 10662 11116 . - . ID=CGI_10000873; C32272 WUBlastX LTR_Gypsy 10662 11216 547 - . . C32272 flankbed promoter 10180 10668 . - . ID=CGI_10000873; C32272 WUBlastX LTR_Gypsy 10180 10668 293 - . . C32276 flankbed promoter 9430 9616 . + . ID=CGI_10000875; C32276 WUBlastX LTR_ERV1 9395 9616 24 - . . C32276 flankbed promoter 9452 9691 . + . ID=CGI_10000875; C32276 WUBlastX LTR_ERV1 9452 9691 27 - . . C32276 flankbed promoter 9446 9607 . + . ID=CGI_10000875; C32276 WUBlastX LTR_ERV1 9446 9607 31 - . . C32444 flankbed promoter 6586 6854 . - . ID=CGI_10000893; C32444 WUBlastX DNA_Sola 6586 6924 73 + . . C32512 flankbed promoter 5 550 . + . ID=CGI_10000906; C32512 WUBlastX DNA_TcMar-Fot1 5 550 358 - . . C32532 flankbed promoter 930 1655 . - . ID=CGI_10000908; C32532 WUBlastX LINE_CR1 930 1655 232 - . . C32532 flankbed promoter 738 1304 . - . ID=CGI_10000908; C32532 WUBlastX LINE_I-Nimb 648 1304 41 - . . C32532 flankbed promoter 738 1109 . - . ID=CGI_10000908; C32532 WUBlastX LINE_I-Nimb 435 1109 37 - . . C32536 flankbed promoter 9777 9818 . - . ID=CGI_10000910; C32536 TRF Tandem_Repeat 9777 9818 84 + . . C32578 flankbed promoter 8766 9395 . + . ID=CGI_10000916; C32578 WUBlastX LINE_L2 8766 9482 66 + . . C32578 flankbed promoter 8892 9395 . + . ID=CGI_10000916; C32578 WUBlastX LINE_L1 8892 9518 98 + . . C32614 flankbed promoter 925 958 . - . ID=CGI_10000923; C32614 TRF Tandem_Repeat 925 958 68 + . . C32614 flankbed promoter 1783 1863 . - . ID=CGI_10000923; C32614 WUBlastX DNA_TcMar-Marin 1783 1863 39 + . . C32984 flankbed promoter 11104 11131 . - . ID=CGI_10000975; C32984 TRF Tandem_Repeat 11104 11131 56 + . . C33084 flankbed promoter 12746 13301 . - . ID=CGI_10000989; C33084 WUBlastX LINE_RTE-BovB 12746 13339 451 - . . C33308 flankbed promoter 11627 11845 . - . ID=CGI_10001041; C33308 WUBlastX DNA_Harbinger 11627 11845 91 + . . C33320 flankbed promoter 913 1110 . - . ID=CGI_10001042; C33320 WUBlastX LTR_Gypsy 913 1110 30 - . . C33332 flankbed promoter 11726 11933 . + . ID=CGI_10001045; C33332 TRF Tandem_Repeat 11726 11933 195 + . . C33332 flankbed promoter 11726 11933 . + . ID=CGI_10001045; C33332 TRF Tandem_Repeat 11726 11933 240 + . . C33332 flankbed promoter 11726 12003 . + . ID=CGI_10001045; C33332 TRF Tandem_Repeat 11726 12003 159 + . . C33368 flankbed promoter 2155 2220 . + . ID=CGI_10001057; C33368 TRF Tandem_Repeat 2155 2220 78 + . . C33368 flankbed promoter 8986 9036 . + . ID=CGI_10001058; C33368 TRF Tandem_Repeat 8986 9036 66 + . . C33368 flankbed promoter 8991 9044 . + . ID=CGI_10001058; C33368 TRF Tandem_Repeat 8991 9044 63 + . . C33654 flankbed promoter 1895 2107 . + . ID=CGI_10001111; C33654 WUBlastX LINE_RTE-X 1895 2107 37 - . . C34200 flankbed promoter 2758 2794 . + . ID=CGI_10001235; C34200 WUBlastX LINE_L2 2447 2794 23 - . . C34256 flankbed promoter 10359 10415 . + . ID=CGI_10001258; C34256 WUBlastX DNA_Kolobok 10359 10673 89 + . . C34256 flankbed promoter 10407 10415 . + . ID=CGI_10001258; C34256 WUBlastX DNA_Kolobok 10407 10697 151 + . . C34256 flankbed promoter 9999 10334 . + . ID=CGI_10001258; C34256 WUBlastX DNA_Kolobok 9999 10334 118 + . . C34256 flankbed promoter 10014 10295 . + . ID=CGI_10001258; C34256 WUBlastX DNA_Kolobok 10014 10295 130 + . . C34436 flankbed promoter 13941 14216 . - . ID=CGI_10001296; C34436 WUBlastX DNA_NOF? 13941 14216 43 + . . C34458 flankbed promoter 10679 10867 . - . ID=CGI_10001298; C34458 WUBlastX LTR_DIRS 10679 10867 52 - . . C34458 flankbed promoter 11072 11395 . - . ID=CGI_10001298; C34458 WUBlastX LTR_DIRS 11072 11395 76 - . . C34622 flankbed promoter 4848 5099 . + . ID=CGI_10001328; C34622 WUBlastX DNA_Kolobok-IS4 4848 5273 57 + . . C35168 flankbed promoter 20339 20543 . - . ID=CGI_10001430; C35168 WUBlastX LTR_Gypsy 20339 21529 477 + . . C35168 flankbed promoter 20327 20543 . - . ID=CGI_10001430; C35168 WUBlastX LTR_Gypsy 20327 21208 566 + . . C35260 flankbed promoter 1575 1936 . + . ID=CGI_10001443; C35260 WUBlastX LINE_L2 1430 1936 61 + . . C35260 flankbed promoter 2014 2238 . + . ID=CGI_10001443; C35260 WUBlastX LINE_L2 2014 2238 43 + . . C35282 flankbed promoter 16091 16144 . - . ID=CGI_10001458; C35282 TRF Tandem_Repeat 16091 16144 108 + . . C35532 flankbed promoter 22401 22500 . - . ID=CGI_10001547; C35532 TRF Tandem_Repeat 22401 23489 1822 + . . C35532 flankbed promoter 21688 22383 . - . ID=CGI_10001547; C35532 WUBlastX LINE_RTE-BovB 21688 22383 184 + . . C35532 flankbed promoter 21574 22308 . - . ID=CGI_10001547; C35532 WUBlastX LINE_RTE-BovB 21574 22308 169 + . . C35532 flankbed promoter 21736 22308 . - . ID=CGI_10001547; C35532 WUBlastX LINE_RTE-BovB 21736 22308 371 + . . C35794 flankbed promoter 27440 27506 . - . ID=CGI_10001609; C35794 TRF Tandem_Repeat 27440 27714 236 + . . C36172 flankbed promoter 1382 1591 . + . ID=CGI_10001813; C36172 WUBlastX DNA_IS4EU 1382 1591 69 - . . C36172 flankbed promoter 17405 17445 . + . ID=CGI_10001814; C36172 TRF Tandem_Repeat 17405 17445 82 + . . C36530 flankbed promoter 23692 24022 . - . ID=CGI_10002001; C36530 WUBlastX DNA_IS 23692 24786 1756 + . . scaffold1 flankbed promoter 263014 263069 . + . ID=CGI_10013474; scaffold1 WUBlastX DNA_hAT-Tip100 261939 263069 693 + . . scaffold1 flankbed promoter 354675 354728 . - . ID=CGI_10013479; scaffold1 TRF Tandem_Repeat 354675 354728 90 + . . scaffold100 flankbed promoter 19048 19087 . + . ID=CGI_10026404; scaffold100 TRF Tandem_Repeat 19048 19087 80 + . . scaffold100 flankbed promoter 19087 19128 . + . ID=CGI_10026404; scaffold100 TRF Tandem_Repeat 19087 19128 84 + . . scaffold100 flankbed promoter 26390 26434 . - . ID=CGI_10026405; scaffold100 TRF Tandem_Repeat 26390 26434 90 + . . scaffold100 flankbed promoter 43045 43146 . + . ID=CGI_10026408; scaffold100 TRF Tandem_Repeat 43045 43146 186 + . . scaffold100 flankbed promoter 51702 51750 . + . ID=CGI_10026409; scaffold100 TRF Tandem_Repeat 51702 51750 98 + . . scaffold100 flankbed promoter 73811 73874 . - . ID=CGI_10026411; scaffold100 TRF Tandem_Repeat 73811 73874 128 + . . scaffold100 flankbed promoter 130305 130454 . - . ID=CGI_10026414; scaffold100 TRF Tandem_Repeat 130305 130454 264 + . . scaffold100 flankbed promoter 376623 376698 . - . ID=CGI_10026430; scaffold100 TRF Tandem_Repeat 376623 376698 152 + . . scaffold100 flankbed promoter 376668 376698 . + . ID=CGI_10026431; scaffold100 TRF Tandem_Repeat 376623 376698 152 + . . scaffold100 flankbed promoter 399796 399855 . - . ID=CGI_10026433; scaffold100 TRF Tandem_Repeat 399796 399855 120 + . . scaffold100 flankbed promoter 669670 669706 . - . ID=CGI_10026447; scaffold100 TRF Tandem_Repeat 669670 669706 74 + . . scaffold100 flankbed promoter 777519 777668 . - . ID=CGI_10026454; scaffold100 TRF Tandem_Repeat 777519 777668 156 + . . scaffold1000 flankbed promoter 69703 69767 . + . ID=CGI_10013069; scaffold1000 TRF Tandem_Repeat 69703 69767 96 + . . scaffold1000 flankbed promoter 85389 85434 . + . ID=CGI_10013071; scaffold1000 TRF Tandem_Repeat 85389 85434 67 + . . scaffold1000 flankbed promoter 143932 144023 . - . ID=CGI_10013074; scaffold1000 TRF Tandem_Repeat 143932 144023 96 + . . scaffold1000 flankbed promoter 192808 192848 . + . ID=CGI_10013080; scaffold1000 TRF Tandem_Repeat 192808 192848 73 + . . scaffold1000 flankbed promoter 273708 273740 . - . ID=CGI_10013085; scaffold1000 WUBlastX LTR_ERV1 273528 273740 44 - . . scaffold1000 flankbed promoter 319881 319911 . - . ID=CGI_10013090; scaffold1000 TRF Tandem_Repeat 319881 319911 62 + . . scaffold1001 flankbed promoter 80805 81167 . - . ID=CGI_10007118; scaffold1001 TRF Tandem_Repeat 80805 81167 548 + . . scaffold1002 flankbed promoter 45314 45646 . - . ID=CGI_10003689; scaffold1002 WUBlastX DNA_Merlin 45314 46018 359 + . . scaffold1002 flankbed promoter 47382 47406 . - . ID=CGI_10003690; scaffold1002 TRF Tandem_Repeat 47382 47406 50 + . . scaffold1004 flankbed promoter 491829 491865 . - . ID=CGI_10020781; scaffold1004 TRF Tandem_Repeat 491829 491865 74 + . . scaffold1004 flankbed promoter 491829 491865 . + . ID=CGI_10020782; scaffold1004 TRF Tandem_Repeat 491829 491865 74 + . . scaffold1004 flankbed promoter 552211 552240 . - . ID=CGI_10020788; scaffold1004 TRF Tandem_Repeat 552211 552240 60 + . . scaffold1004 flankbed promoter 552251 552397 . - . ID=CGI_10020788; scaffold1004 TRF Tandem_Repeat 552251 552397 110 + . . scaffold1004 flankbed promoter 552251 552397 . - . ID=CGI_10020788; scaffold1004 TRF Tandem_Repeat 552251 552397 132 + . . scaffold1004 flankbed promoter 552250 552397 . - . ID=CGI_10020788; scaffold1004 TRF Tandem_Repeat 552250 552397 118 + . . scaffold1004 flankbed promoter 636453 637337 . - . ID=CGI_10020793; scaffold1004 WUBlastX DNA_TcMar-m44 636453 637337 559 - . . scaffold1009 flankbed promoter 271301 271355 . - . ID=CGI_10028723; scaffold1009 TRF Tandem_Repeat 271301 271355 110 + . . scaffold1009 flankbed promoter 288632 288867 . - . ID=CGI_10028724; scaffold1009 WUBlastX LINE_L2 288632 289102 137 + . . scaffold1009 flankbed promoter 296087 296121 . + . ID=CGI_10028725; scaffold1009 TRF Tandem_Repeat 296087 296121 61 + . . scaffold1009 flankbed promoter 305454 305493 . - . ID=CGI_10028726; scaffold1009 TRF Tandem_Repeat 305454 305493 80 + . . scaffold1009 flankbed promoter 340275 340319 . + . ID=CGI_10028728; scaffold1009 TRF Tandem_Repeat 340275 340319 90 + . . scaffold1009 flankbed promoter 401787 401844 . - . ID=CGI_10028730; scaffold1009 TRF Tandem_Repeat 401787 401844 116 + . . scaffold1009 flankbed promoter 689191 689370 . - . ID=CGI_10028751; scaffold1009 TRF Tandem_Repeat 689191 689564 324 + . . scaffold1009 flankbed promoter 689191 689370 . - . ID=CGI_10028751; scaffold1009 TRF Tandem_Repeat 689191 689564 418 + . . scaffold1009 flankbed promoter 714498 714543 . - . ID=CGI_10028752; scaffold1009 TRF Tandem_Repeat 714498 714543 60 + . . scaffold1009 flankbed promoter 1130204 1130242 . + . ID=CGI_10028784; scaffold1009 TRF Tandem_Repeat 1130204 1130242 69 + . . scaffold1009 flankbed promoter 1596288 1596321 . - . ID=CGI_10028811; scaffold1009 TRF Tandem_Repeat 1596288 1596321 68 + . . scaffold1009 flankbed promoter 1616929 1616974 . + . ID=CGI_10028814; scaffold1009 TRF Tandem_Repeat 1616929 1616974 92 + . . scaffold101 flankbed promoter 5767 5833 . - . ID=CGI_10021630; scaffold101 TRF Tandem_Repeat 5767 5833 80 + . . scaffold101 flankbed promoter 120022 120117 . + . ID=CGI_10021634; scaffold101 TRF Tandem_Repeat 120022 120117 90 + . . scaffold101 flankbed promoter 328959 329108 . - . ID=CGI_10021646; scaffold101 WUBlastX LINE_RTE-X 328959 329108 38 + . . scaffold101 flankbed promoter 328711 328923 . - . ID=CGI_10021646; scaffold101 WUBlastX LINE_RTE-X 328711 328923 67 + . . scaffold101 flankbed promoter 328629 328691 . - . ID=CGI_10021646; scaffold101 WUBlastX LINE_RTE-X 328629 328691 25 + . . scaffold101 flankbed promoter 328923 329060 . - . ID=CGI_10021646; scaffold101 WUBlastX LINE_RTE-X 328923 329060 63 + . . scaffold1014 flankbed promoter 162668 163667 . + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 162610 164231 1880 + . . scaffold1014 flankbed promoter 162668 163667 . + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 162610 164233 1892 + . . scaffold1014 flankbed promoter 162668 163667 . + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 162610 164231 1890 + . . scaffold1014 flankbed promoter 595194 595245 . - . ID=CGI_10020275; scaffold1014 TRF Tandem_Repeat 595194 595245 104 + . . scaffold1016 flankbed promoter 203360 203450 . - . ID=CGI_10016888; scaffold1016 TRF Tandem_Repeat 203360 203450 146 + . . scaffold1016 flankbed promoter 203416 203505 . - . ID=CGI_10016888; scaffold1016 TRF Tandem_Repeat 203416 203505 90 + . . scaffold1016 flankbed promoter 433861 434052 . + . ID=CGI_10016898; scaffold1016 WUBlastX DNA_IS4EU 433861 434250 73 + . . scaffold1016 flankbed promoter 464149 464590 . + . ID=CGI_10016901; scaffold1016 WUBlastX LTR_Gypsy 464138 464590 124 + . . scaffold1016 flankbed promoter 464149 464377 . + . ID=CGI_10016901; scaffold1016 WUBlastX LTR_Gypsy 464102 464377 219 + . . scaffold1017 flankbed promoter 75889 76296 . + . ID=CGI_10024981; scaffold1017 TRF Tandem_Repeat 75889 76296 433 + . . scaffold1017 flankbed promoter 340997 341032 . - . ID=CGI_10024998; scaffold1017 TRF Tandem_Repeat 340997 341032 65 + . . scaffold1017 flankbed promoter 340997 341032 . + . ID=CGI_10024999; scaffold1017 TRF Tandem_Repeat 340997 341032 65 + . . scaffold1017 flankbed promoter 388665 388711 . + . ID=CGI_10025004; scaffold1017 TRF Tandem_Repeat 388665 388711 94 + . . scaffold1017 flankbed promoter 427053 427113 . + . ID=CGI_10025008; scaffold1017 TRF Tandem_Repeat 427053 427113 115 + . . scaffold1017 flankbed promoter 537869 537951 . + . ID=CGI_10025015; scaffold1017 TRF Tandem_Repeat 537850 537951 105 + . . scaffold1017 flankbed promoter 538845 538868 . + . ID=CGI_10025015; scaffold1017 WUBlastX LTR_Pao 538845 538973 78 + . . scaffold1017 flankbed promoter 771714 771761 . - . ID=CGI_10025025; scaffold1017 TRF Tandem_Repeat 771714 771761 96 + . . scaffold1017 flankbed promoter 781080 781261 . - . ID=CGI_10025026; scaffold1017 WUBlastX DNA_hAT 781080 781292 57 + . . scaffold1017 flankbed promoter 793606 793699 . - . ID=CGI_10025028; scaffold1017 TRF Tandem_Repeat 793606 793699 134 + . . scaffold1017 flankbed promoter 856614 856708 . + . ID=CGI_10025033; scaffold1017 TRF Tandem_Repeat 856614 856708 145 + . . scaffold1017 flankbed promoter 1014431 1014501 . - . ID=CGI_10025036; scaffold1017 TRF Tandem_Repeat 1014431 1014501 142 + . . scaffold1018 flankbed promoter 115498 115608 . + . ID=CGI_10019754; scaffold1018 TRF Tandem_Repeat 115498 115608 66 + . . scaffold1018 flankbed promoter 165653 165772 . + . ID=CGI_10019758; scaffold1018 TRF Tandem_Repeat 164527 165772 1701 + . . scaffold1018 flankbed promoter 165822 165983 . + . ID=CGI_10019758; scaffold1018 WUBlastX DNA_TcMar-Tc1 165822 165983 93 + . . scaffold1018 flankbed promoter 165983 166180 . + . ID=CGI_10019758; scaffold1018 WUBlastX DNA_TcMar-Tc1 165983 166180 94 + . . scaffold1018 flankbed promoter 236001 236510 . + . ID=CGI_10019761; scaffold1018 WUBlastX LTR_Gypsy 235485 236510 365 + . . scaffold1018 flankbed promoter 236001 236318 . + . ID=CGI_10019761; scaffold1018 WUBlastX LTR_Gypsy 235329 236318 313 + . . scaffold1018 flankbed promoter 236001 236339 . + . ID=CGI_10019761; scaffold1018 WUBlastX LTR_Gypsy 235488 236339 620 + . . scaffold1018 flankbed promoter 242148 242194 . + . ID=CGI_10019762; scaffold1018 TRF Tandem_Repeat 242148 242194 94 + . . scaffold1018 flankbed promoter 310916 310962 . - . ID=CGI_10019765; scaffold1018 TRF Tandem_Repeat 310916 310962 94 + . . scaffold1018 flankbed promoter 332682 333356 . - . ID=CGI_10019766; scaffold1018 WUBlastX DNA_MuDR 332526 333356 47 - . . scaffold1018 flankbed promoter 353862 354158 . + . ID=CGI_10019768; scaffold1018 TRF Tandem_Repeat 353848 354158 384 + . . scaffold1018 flankbed promoter 443086 443117 . - . ID=CGI_10019773; scaffold1018 TRF Tandem_Repeat 443086 443117 55 + . . scaffold1018 flankbed promoter 443833 444126 . - . ID=CGI_10019774; scaffold1018 WUBlastX DNA_hAT-Tip100 443833 444126 83 + . . scaffold1018 flankbed promoter 460140 460416 . + . ID=CGI_10019775; scaffold1018 WUBlastX DNA_PiggyBac 460003 460416 55 + . . scaffold1018 flankbed promoter 460140 460389 . + . ID=CGI_10019775; scaffold1018 WUBlastX DNA_PiggyBac 460066 460389 167 + . . scaffold1018 flankbed promoter 460401 460979 . + . ID=CGI_10019775; scaffold1018 WUBlastX DNA_PiggyBac 460401 460979 227 + . . scaffold1018 flankbed promoter 460162 460404 . + . ID=CGI_10019775; scaffold1018 WUBlastX DNA_PiggyBac 460162 460404 183 + . . scaffold1018 flankbed promoter 476894 476996 . - . ID=CGI_10019777; scaffold1018 TRF Tandem_Repeat 476894 476996 59 + . . scaffold1018 flankbed promoter 476936 476986 . - . ID=CGI_10019777; scaffold1018 TRF Tandem_Repeat 476936 476986 57 + . . scaffold102 flankbed promoter 12334 12359 . - . ID=CGI_10028419; scaffold102 TRF Tandem_Repeat 12334 12359 52 + . . scaffold102 flankbed promoter 187651 188438 . + . ID=CGI_10028427; scaffold102 TRF Tandem_Repeat 187083 188438 1841 + . . scaffold102 flankbed promoter 187651 188438 . + . ID=CGI_10028427; scaffold102 TRF Tandem_Repeat 187083 188438 1978 + . . scaffold102 flankbed promoter 241572 241784 . + . ID=CGI_10028428; scaffold102 WUBlastX DNA_Kolobok-Hyd 241572 241784 26 + . . scaffold102 flankbed promoter 302576 302612 . - . ID=CGI_10028431; scaffold102 TRF Tandem_Repeat 302576 302756 156 + . . scaffold102 flankbed promoter 368590 368661 . - . ID=CGI_10028433; scaffold102 WUBlastX LINE_RTE-X 367654 368661 227 - . . scaffold102 flankbed promoter 368228 368661 . + . ID=CGI_10028434; scaffold102 WUBlastX LINE_RTE-X 367654 368661 227 - . . scaffold102 flankbed promoter 488494 488536 . + . ID=CGI_10028438; scaffold102 TRF Tandem_Repeat 488494 488536 50 + . . scaffold102 flankbed promoter 619685 619708 . + . ID=CGI_10028443; scaffold102 TRF Tandem_Repeat 619665 619708 70 + . . scaffold102 flankbed promoter 643934 643972 . + . ID=CGI_10028445; scaffold102 WUBlastX LTR_Ngaro 643934 644050 57 + . . scaffold102 flankbed promoter 643632 643880 . + . ID=CGI_10028445; scaffold102 WUBlastX LTR_Ngaro 643632 643880 21 + . . scaffold102 flankbed promoter 643949 643972 . + . ID=CGI_10028445; scaffold102 WUBlastX LTR_Ngaro 643949 644107 48 + . . scaffold102 flankbed promoter 673288 674181 . + . ID=CGI_10028446; scaffold102 WUBlastX LTR_Gypsy 673288 674454 646 + . . scaffold102 flankbed promoter 700653 700773 . + . ID=CGI_10028447; scaffold102 TRF Tandem_Repeat 700653 700773 80 + . . scaffold102 flankbed promoter 790969 791211 . - . ID=CGI_10028448; scaffold102 TRF Tandem_Repeat 790969 791211 106 + . . scaffold102 flankbed promoter 842121 842193 . + . ID=CGI_10028452; scaffold102 TRF Tandem_Repeat 842121 842193 146 + . . scaffold102 flankbed promoter 864414 864460 . - . ID=CGI_10028455; scaffold102 TRF Tandem_Repeat 864414 864460 94 + . . scaffold102 flankbed promoter 865054 865120 . - . ID=CGI_10028455; scaffold102 TRF Tandem_Repeat 865054 865120 125 + . . scaffold102 flankbed promoter 994480 994514 . - . ID=CGI_10028460; scaffold102 TRF Tandem_Repeat 994480 994514 70 + . . scaffold102 flankbed promoter 1038199 1038979 . + . ID=CGI_10028462; scaffold102 WUBlastX LINE_L1-Tx1 1038110 1038979 133 - . . scaffold102 flankbed promoter 1095900 1095941 . + . ID=CGI_10028470; scaffold102 WUBlastX LTR_Gypsy 1095900 1096169 66 + . . scaffold102 flankbed promoter 1100786 1100980 . + . ID=CGI_10028471; scaffold102 TRF Tandem_Repeat 1099900 1100980 1304 + . . scaffold102 flankbed promoter 1239683 1240060 . + . ID=CGI_10028483; scaffold102 TRF Tandem_Repeat 1239155 1240060 1127 + . . scaffold102 flankbed promoter 1319811 1319857 . - . ID=CGI_10028493; scaffold102 TRF Tandem_Repeat 1319811 1319857 94 + . . scaffold102 flankbed promoter 1392188 1392242 . - . ID=CGI_10028496; scaffold102 TRF Tandem_Repeat 1392188 1392242 103 + . . scaffold102 flankbed promoter 1541220 1541568 . - . ID=CGI_10028505; scaffold102 TRF Tandem_Repeat 1541220 1541568 413 + . . scaffold102 flankbed promoter 1690175 1690212 . - . ID=CGI_10028514; scaffold102 TRF Tandem_Repeat 1690175 1690212 76 + . . scaffold1020 flankbed promoter 42546 42953 . + . ID=CGI_10012849; scaffold1020 WUBlastX LTR_Gypsy 42042 42953 624 + . . scaffold1020 flankbed promoter 42546 43136 . + . ID=CGI_10012849; scaffold1020 WUBlastX LTR_Gypsy 42078 43136 83 + . . scaffold1020 flankbed promoter 219942 220078 . - . ID=CGI_10012856; scaffold1020 TRF Tandem_Repeat 219942 220078 107 + . . scaffold1020 flankbed promoter 331335 331431 . + . ID=CGI_10012862; scaffold1020 WUBlastX LTR_Gypsy 331153 331431 39 - . . scaffold1020 flankbed promoter 331335 332064 . + . ID=CGI_10012862; scaffold1020 WUBlastX LTR_Gypsy 331195 332064 447 - . . scaffold1021 flankbed promoter 366155 366263 . + . ID=CGI_10022492; scaffold1021 TRF Tandem_Repeat 366155 366263 182 + . . scaffold1021 flankbed promoter 395333 395376 . + . ID=CGI_10022495; scaffold1021 TRF Tandem_Repeat 395333 395376 61 + . . scaffold1024 flankbed promoter 22878 22998 . - . ID=CGI_10028517; scaffold1024 WUBlastX LINE_Jockey 22878 23234 42 - . . scaffold1024 flankbed promoter 21999 22037 . - . ID=CGI_10028517; scaffold1024 WUBlastX LINE_CR1-L2 20187 22037 963 - . . scaffold1024 flankbed promoter 22058 22498 . - . ID=CGI_10028517; scaffold1024 WUBlastX LINE_CR1-L2 22058 22498 208 - . . scaffold1024 flankbed promoter 22521 22998 . - . ID=CGI_10028517; scaffold1024 WUBlastX LINE_L2 22521 23147 219 - . . scaffold1024 flankbed promoter 70775 70810 . + . ID=CGI_10028519; scaffold1024 WUBlastX LINE_CR1 70775 71029 195 + . . scaffold1024 flankbed promoter 135409 135682 . - . ID=CGI_10028523; scaffold1024 WUBlastX DNA_hAT-Hobo 135326 135682 20 + . . scaffold1024 flankbed promoter 135515 135679 . - . ID=CGI_10028523; scaffold1024 WUBlastX DNA_hAT-Hobo 135515 135679 98 + . . scaffold1024 flankbed promoter 154802 155107 . + . ID=CGI_10028527; scaffold1024 WUBlastX LTR_Gypsy 154802 155107 35 + . . scaffold1024 flankbed promoter 455648 455925 . + . ID=CGI_10028535; scaffold1024 TRF Tandem_Repeat 455473 455925 734 + . . scaffold1024 flankbed promoter 718311 719081 . - . ID=CGI_10028543; scaffold1024 TRF Tandem_Repeat 718311 719081 802 + . . scaffold1024 flankbed promoter 718705 719200 . - . ID=CGI_10028543; scaffold1024 TRF Tandem_Repeat 718705 719379 478 + . . scaffold1024 flankbed promoter 718249 719200 . - . ID=CGI_10028543; scaffold1024 TRF Tandem_Repeat 718249 719529 718 + . . scaffold1024 flankbed promoter 896964 897038 . - . ID=CGI_10028552; scaffold1024 WUBlastX LINE_CR1 896943 897038 24 - . . scaffold1024 flankbed promoter 897151 897939 . - . ID=CGI_10028552; scaffold1024 WUBlastX LINE_CR1 897151 897939 203 - . . scaffold1024 flankbed promoter 994725 994883 . - . ID=CGI_10028555; scaffold1024 WUBlastX LINE_Penelope 994725 994883 28 - . . scaffold1024 flankbed promoter 1025579 1025607 . + . ID=CGI_10028556; scaffold1024 TRF Tandem_Repeat 1025579 1025607 51 + . . scaffold1024 flankbed promoter 1055479 1055625 . + . ID=CGI_10028560; scaffold1024 WUBlastX DNA_PiggyBac 1055479 1055625 27 - . . scaffold1024 flankbed promoter 1056091 1056201 . + . ID=CGI_10028560; scaffold1024 WUBlastX DNA_PiggyBac 1056091 1056201 30 - . . scaffold1024 flankbed promoter 1055690 1055926 . + . ID=CGI_10028560; scaffold1024 WUBlastX DNA_PiggyBac 1055690 1055926 70 - . . scaffold1024 flankbed promoter 1055768 1056043 . + . ID=CGI_10028560; scaffold1024 WUBlastX DNA_PiggyBac 1055768 1056043 67 - . . scaffold1024 flankbed promoter 1067771 1067972 . - . ID=CGI_10028561; scaffold1024 WUBlastX DNA_PiggyBac 1067771 1068895 612 - . . scaffold1024 flankbed promoter 1067771 1067972 . - . ID=CGI_10028561; scaffold1024 WUBlastX DNA_PiggyBac 1067771 1069135 363 - . . scaffold1024 flankbed promoter 1079158 1079236 . - . ID=CGI_10028564; scaffold1024 WUBlastX DNA_PiggyBac 1079158 1079424 65 - . . scaffold1024 flankbed promoter 1079083 1079236 . - . ID=CGI_10028564; scaffold1024 WUBlastX DNA_PiggyBac 1079083 1079412 64 - . . scaffold1024 flankbed promoter 1084482 1084838 . - . ID=CGI_10028565; scaffold1024 WUBlastX LTR_Ngaro 1084482 1085570 335 - . . scaffold1024 flankbed promoter 1280025 1280212 . - . ID=CGI_10028573; scaffold1024 TRF Tandem_Repeat 1280025 1280212 196 + . . scaffold1024 flankbed promoter 1280025 1280221 . - . ID=CGI_10028573; scaffold1024 TRF Tandem_Repeat 1280025 1280221 270 + . . scaffold1024 flankbed promoter 1435304 1435798 . - . ID=CGI_10028578; scaffold1024 WUBlastX LTR_Ngaro 1435304 1435993 125 + . . scaffold1024 flankbed promoter 1622643 1622741 . - . ID=CGI_10028582; scaffold1024 WUBlastX LINE_Jockey 1622643 1622978 77 - . . scaffold1024 flankbed promoter 1622119 1622640 . - . ID=CGI_10028582; scaffold1024 WUBlastX LINE_RTE-X 1622119 1622640 120 - . . scaffold1024 flankbed promoter 1622706 1622741 . - . ID=CGI_10028582; scaffold1024 WUBlastX LINE_RTE-X 1622706 1622981 99 - . . scaffold1024 flankbed promoter 1621742 1622044 . - . ID=CGI_10028582; scaffold1024 WUBlastX LINE_RTE-X 1620866 1622044 509 - . . scaffold1024 flankbed promoter 1622002 1622364 . - . ID=CGI_10028582; scaffold1024 WUBlastX LINE_RTE-X 1622002 1622364 186 - . . scaffold1028 flankbed promoter 198287 198329 . + . ID=CGI_10009724; scaffold1028 TRF Tandem_Repeat 198287 198329 86 + . . scaffold1031 flankbed promoter 74612 74657 . + . ID=CGI_10019694; scaffold1031 TRF Tandem_Repeat 74612 74657 92 + . . scaffold1031 flankbed promoter 211844 211882 . - . ID=CGI_10019699; scaffold1031 TRF Tandem_Repeat 211844 211882 78 + . . scaffold1031 flankbed promoter 392833 392865 . + . ID=CGI_10019709; scaffold1031 TRF Tandem_Repeat 392833 392865 66 + . . scaffold1032 flankbed promoter 158711 158772 . + . ID=CGI_10021663; scaffold1032 TRF Tandem_Repeat 158711 158772 108 + . . scaffold1032 flankbed promoter 251914 251948 . - . ID=CGI_10021673; scaffold1032 TRF Tandem_Repeat 251914 251948 70 + . . scaffold1032 flankbed promoter 648420 648454 . - . ID=CGI_10021698; scaffold1032 TRF Tandem_Repeat 648420 648454 70 + . . scaffold1032 flankbed promoter 648824 648865 . - . ID=CGI_10021698; scaffold1032 TRF Tandem_Repeat 648824 648865 84 + . . scaffold1032 flankbed promoter 638479 638857 . + . ID=CGI_10021699; scaffold1032 TRF Tandem_Repeat 638411 638857 515 + . . scaffold1032 flankbed promoter 638479 638507 . + . ID=CGI_10021699; scaffold1032 TRF Tandem_Repeat 638431 638507 72 + . . scaffold1032 flankbed promoter 711043 711117 . - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_RTE-X 711043 711117 20 + . . scaffold1033 flankbed promoter 3878 3927 . + . ID=CGI_10007940; scaffold1033 TRF Tandem_Repeat 3878 3927 100 + . . scaffold1033 flankbed promoter 11383 11447 . + . ID=CGI_10007941; scaffold1033 TRF Tandem_Repeat 11383 11447 103 + . . scaffold1035 flankbed promoter 60980 61789 . - . ID=CGI_10009361; scaffold1035 WUBlastX LINE_L1 60980 61789 44 - . . scaffold1035 flankbed promoter 61004 61591 . - . ID=CGI_10009361; scaffold1035 WUBlastX LINE_L2 61004 61591 81 - . . scaffold1036 flankbed promoter 135395 135480 . - . ID=CGI_10019949; scaffold1036 WUBlastX LINE_L1 135395 136285 25 + . . scaffold1036 flankbed promoter 207153 207192 . - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 207153 207254 57 - . . scaffold1036 flankbed promoter 207192 207192 . - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 207192 207983 231 - . . scaffold1036 flankbed promoter 214978 215024 . - . ID=CGI_10019955; scaffold1036 WUBlastX LINE_L1-Tx1 214978 216795 999 + . . scaffold1036 flankbed promoter 214999 215024 . - . ID=CGI_10019955; scaffold1036 WUBlastX LINE_L1 214999 218310 366 + . . scaffold1036 flankbed promoter 214911 215021 . - . ID=CGI_10019955; scaffold1036 WUBlastX LINE_L1-Tx1 214911 215021 38 + . . scaffold1036 flankbed promoter 218834 218893 . + . ID=CGI_10019956; scaffold1036 TRF Tandem_Repeat 218834 218893 102 + . . scaffold1036 flankbed promoter 218049 218310 . + . ID=CGI_10019956; scaffold1036 WUBlastX LINE_L1 214999 218310 366 + . . scaffold1036 flankbed promoter 218313 218696 . + . ID=CGI_10019956; scaffold1036 WUBlastX LINE_L1-Tx1 218313 218696 37 + . . scaffold1036 flankbed promoter 218049 218520 . + . ID=CGI_10019956; scaffold1036 WUBlastX LINE_L1-Tx1 217393 218520 73 + . . scaffold1036 flankbed promoter 331301 331483 . - . ID=CGI_10019962; scaffold1036 WUBlastX LTR_Gypsy 331301 331483 65 - . . scaffold1036 flankbed promoter 346785 346879 . + . ID=CGI_10019963; scaffold1036 TRF Tandem_Repeat 346785 346879 104 + . . scaffold1036 flankbed promoter 458275 458359 . - . ID=CGI_10019967; scaffold1036 TRF Tandem_Repeat 458275 458359 116 + . . scaffold1036 flankbed promoter 458275 458359 . - . ID=CGI_10019967; scaffold1036 TRF Tandem_Repeat 458275 458359 116 + . . scaffold1036 flankbed promoter 515993 516055 . - . ID=CGI_10019972; scaffold1036 TRF Tandem_Repeat 515993 516055 110 + . . scaffold1036 flankbed promoter 516132 516223 . - . ID=CGI_10019972; scaffold1036 TRF Tandem_Repeat 516132 516223 114 + . . scaffold1037 flankbed promoter 74357 74395 . + . ID=CGI_10017447; scaffold1037 TRF Tandem_Repeat 74357 74395 78 + . . scaffold1037 flankbed promoter 240357 240411 . - . ID=CGI_10017458; scaffold1037 TRF Tandem_Repeat 240357 240411 110 + . . scaffold1037 flankbed promoter 384852 384906 . - . ID=CGI_10017467; scaffold1037 TRF Tandem_Repeat 384852 384906 110 + . . scaffold1037 flankbed promoter 455288 455358 . - . ID=CGI_10017473; scaffold1037 TRF Tandem_Repeat 455288 455358 142 + . . scaffold1037 flankbed promoter 455443 455499 . - . ID=CGI_10017473; scaffold1037 TRF Tandem_Repeat 455443 455499 107 + . . scaffold105 flankbed promoter 4678 4723 . + . ID=CGI_10015738; scaffold105 TRF Tandem_Repeat 4678 4723 92 + . . scaffold105 flankbed promoter 133723 133792 . + . ID=CGI_10015744; scaffold105 TRF Tandem_Repeat 133723 133792 140 + . . scaffold1050 flankbed promoter 17048 17167 . - . ID=CGI_10009164; scaffold1050 WUBlastX LINE_RTE-BovB 17048 17167 51 - . . scaffold1050 flankbed promoter 16964 17176 . - . ID=CGI_10009164; scaffold1050 WUBlastX LINE_RTE-BovB 16964 17176 27 - . . scaffold1050 flankbed promoter 17112 17327 . - . ID=CGI_10009164; scaffold1050 WUBlastX LINE_RTE-BovB 17112 17327 43 - . . scaffold1050 flankbed promoter 88427 88570 . + . ID=CGI_10009170; scaffold1050 TRF Tandem_Repeat 88427 88570 238 + . . scaffold1050 flankbed promoter 109648 109687 . - . ID=CGI_10009171; scaffold1050 TRF Tandem_Repeat 109648 109687 80 + . . scaffold1050 flankbed promoter 109648 109687 . + . ID=CGI_10009172; scaffold1050 TRF Tandem_Repeat 109648 109687 80 + . . scaffold1052 flankbed promoter 79895 80110 . - . ID=CGI_10005470; scaffold1052 WUBlastX LINE_L2 79895 80110 34 - . . scaffold1052 flankbed promoter 80399 80563 . - . ID=CGI_10005470; scaffold1052 WUBlastX LINE_RTE-X 80399 80563 98 + . . scaffold1052 flankbed promoter 79733 80020 . - . ID=CGI_10005470; scaffold1052 WUBlastX LINE_L2 79733 80020 93 - . . scaffold1052 flankbed promoter 79726 80020 . - . ID=CGI_10005470; scaffold1052 WUBlastX LINE_L2 79658 80020 60 - . . scaffold1052 flankbed promoter 79733 80077 . - . ID=CGI_10005470; scaffold1052 WUBlastX LINE_L2 79733 80077 61 - . . scaffold1052 flankbed promoter 80399 80563 . + . ID=CGI_10005471; scaffold1052 WUBlastX LINE_RTE-X 80399 80563 98 + . . scaffold1053 flankbed promoter 60813 60939 . - . ID=CGI_10014294; scaffold1053 TRF Tandem_Repeat 60813 60939 182 + . . scaffold1054 flankbed promoter 311606 311637 . + . ID=CGI_10012967; scaffold1054 WUBlastX LTR_Gypsy 310723 311637 121 + . . scaffold1054 flankbed promoter 330138 330178 . + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 329738 330178 24 + . . scaffold1054 flankbed promoter 331129 331137 . + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 331129 331824 209 + . . scaffold1058 flankbed promoter 13782 13980 . - . ID=CGI_10004875; scaffold1058 WUBlastX LINE_RTE-X 13782 14171 92 - . . scaffold106 flankbed promoter 225301 225347 . + . ID=CGI_10022031; scaffold106 TRF Tandem_Repeat 225301 225347 58 + . . scaffold106 flankbed promoter 344751 344808 . - . ID=CGI_10022040; scaffold106 WUBlastX LINE_CR1 344751 345122 235 + . . scaffold106 flankbed promoter 344221 344754 . - . ID=CGI_10022040; scaffold106 WUBlastX LINE_CR1 344221 344754 423 + . . scaffold106 flankbed promoter 344002 344766 . - . ID=CGI_10022040; scaffold106 WUBlastX LINE_L2 344002 344766 153 + . . scaffold106 flankbed promoter 636373 636690 . - . ID=CGI_10022050; scaffold106 TRF Tandem_Repeat 636373 637257 1260 + . . scaffold1061 flankbed promoter 72148 72186 . - . ID=CGI_10017240; scaffold1061 WUBlastX DNA_Kolobok-Hyd 72148 72186 24 - . . scaffold1061 flankbed promoter 243465 243523 . + . ID=CGI_10017251; scaffold1061 TRF Tandem_Repeat 243465 243523 118 + . . scaffold1061 flankbed promoter 468500 468557 . + . ID=CGI_10017259; scaffold1061 TRF Tandem_Repeat 468500 468557 116 + . . scaffold1064 flankbed promoter 69545 69640 . + . ID=CGI_10006537; scaffold1064 WUBlastX LTR_Gypsy 69545 70189 25 + . . scaffold1064 flankbed promoter 146719 146792 . - . ID=CGI_10006542; scaffold1064 TRF Tandem_Repeat 146719 146792 87 + . . scaffold1064 flankbed promoter 147339 147458 . - . ID=CGI_10006542; scaffold1064 WUBlastX DNA_MuDR 147339 147458 49 - . . scaffold1066 flankbed promoter 214769 214817 . - . ID=CGI_10012660; scaffold1066 TRF Tandem_Repeat 214769 215586 1104 + . . scaffold107 flankbed promoter 17479 17697 . - . ID=CGI_10025039; scaffold107 TRF Tandem_Repeat 17479 17697 54 + . . scaffold107 flankbed promoter 300002 300048 . + . ID=CGI_10025050; scaffold107 TRF Tandem_Repeat 300002 300048 69 + . . scaffold107 flankbed promoter 378234 378268 . + . ID=CGI_10025053; scaffold107 TRF Tandem_Repeat 378234 378268 70 + . . scaffold107 flankbed promoter 378615 378651 . + . ID=CGI_10025053; scaffold107 TRF Tandem_Repeat 378615 378651 60 + . . scaffold107 flankbed promoter 541735 541770 . + . ID=CGI_10025060; scaffold107 TRF Tandem_Repeat 541735 541770 54 + . . scaffold107 flankbed promoter 653674 653702 . - . ID=CGI_10025068; scaffold107 TRF Tandem_Repeat 653674 653702 58 + . . scaffold107 flankbed promoter 653702 653743 . - . ID=CGI_10025068; scaffold107 TRF Tandem_Repeat 653702 653743 84 + . . scaffold107 flankbed promoter 665549 665662 . + . ID=CGI_10025070; scaffold107 WUBlastX LINE_RTE-X 665549 665662 37 - . . scaffold107 flankbed promoter 665534 665635 . + . ID=CGI_10025070; scaffold107 WUBlastX LINE_RTE-X 665534 665635 37 - . . scaffold107 flankbed promoter 673933 674455 . + . ID=CGI_10025071; scaffold107 WUBlastX LTR_Gypsy 673373 674455 642 + . . scaffold107 flankbed promoter 673933 674653 . + . ID=CGI_10025071; scaffold107 WUBlastX LTR_Gypsy 673379 674653 546 + . . scaffold107 flankbed promoter 674639 674794 . + . ID=CGI_10025071; scaffold107 WUBlastX LTR_Copia 674639 674794 25 + . . scaffold1070 flankbed promoter 90390 90447 . + . ID=CGI_10004522; scaffold1070 TRF Tandem_Repeat 90390 90447 107 + . . scaffold1077 flankbed promoter 1101 1433 . - . ID=CGI_10017821; scaffold1077 WUBlastX DNA_hAT 1101 1433 23 - . . scaffold1077 flankbed promoter 178811 179389 . - . ID=CGI_10017826; scaffold1077 WUBlastX LINE_L1-Tx1 178811 179854 145 + . . scaffold1077 flankbed promoter 178742 179098 . - . ID=CGI_10017826; scaffold1077 WUBlastX LINE_L1-Tx1 178742 179098 91 + . . scaffold1077 flankbed promoter 228040 228115 . - . ID=CGI_10017827; scaffold1077 TRF Tandem_Repeat 228040 228115 90 + . . scaffold1078 flankbed promoter 8252 8576 . + . ID=CGI_10004751; scaffold1078 TRF Tandem_Repeat 8252 8576 102 + . . scaffold1078 flankbed promoter 8288 8571 . + . ID=CGI_10004751; scaffold1078 TRF Tandem_Repeat 8288 8571 295 + . . scaffold1078 flankbed promoter 8252 8571 . + . ID=CGI_10004751; scaffold1078 TRF Tandem_Repeat 8252 8571 292 + . . scaffold1078 flankbed promoter 8418 8570 . + . ID=CGI_10004751; scaffold1078 TRF Tandem_Repeat 8418 8570 171 + . . scaffold1078 flankbed promoter 50473 50513 . + . ID=CGI_10004753; scaffold1078 TRF Tandem_Repeat 50473 50513 82 + . . scaffold1080 flankbed promoter 148436 148570 . + . ID=CGI_10012673; scaffold1080 WUBlastX DNA_TcMar-Tc2 148436 148651 40 + . . scaffold1080 flankbed promoter 148011 148415 . + . ID=CGI_10012673; scaffold1080 WUBlastX DNA_TcMar-Tc2 148011 148415 26 + . . scaffold1083 flankbed promoter 36085 36135 . - . ID=CGI_10016519; scaffold1083 TRF Tandem_Repeat 36085 36135 102 + . . scaffold1083 flankbed promoter 104576 104623 . + . ID=CGI_10016525; scaffold1083 TRF Tandem_Repeat 104576 104623 89 + . . scaffold1083 flankbed promoter 376335 376372 . - . ID=CGI_10016544; scaffold1083 TRF Tandem_Repeat 376335 376372 76 + . . scaffold1084 flankbed promoter 53226 53243 . - . ID=CGI_10010076; scaffold1084 TRF Tandem_Repeat 53226 53414 306 + . . scaffold1084 flankbed promoter 198342 198477 . + . ID=CGI_10010080; scaffold1084 WUBlastX LINE_L1-Tx1 198202 198477 139 - . . scaffold1084 flankbed promoter 198342 198477 . + . ID=CGI_10010080; scaffold1084 WUBlastX LINE_L1-Tx1 198142 198477 91 - . . scaffold1084 flankbed promoter 198342 198531 . + . ID=CGI_10010080; scaffold1084 WUBlastX LINE_L1-Tx1 198208 198531 44 - . . scaffold1086 flankbed promoter 173942 174006 . - . ID=CGI_10021935; scaffold1086 TRF Tandem_Repeat 173942 174006 109 + . . scaffold1086 flankbed promoter 414047 414091 . - . ID=CGI_10021945; scaffold1086 TRF Tandem_Repeat 414047 414091 90 + . . scaffold1086 flankbed promoter 660054 660091 . - . ID=CGI_10021953; scaffold1086 TRF Tandem_Repeat 660054 660091 76 + . . scaffold1087 flankbed promoter 458 472 . + . ID=CGI_10001183; scaffold1087 TRF Tandem_Repeat 445 472 56 + . . scaffold1087 flankbed promoter 515 556 . + . ID=CGI_10001183; scaffold1087 TRF Tandem_Repeat 515 556 84 + . . scaffold1087 flankbed promoter 1315 1350 . + . ID=CGI_10001183; scaffold1087 TRF Tandem_Repeat 1315 1350 72 + . . scaffold1088 flankbed promoter 15169 15201 . - . ID=CGI_10003648; scaffold1088 TRF Tandem_Repeat 15169 15201 66 + . . scaffold109 flankbed promoter 214439 214490 . - . ID=CGI_10022111; scaffold109 TRF Tandem_Repeat 214439 214490 95 + . . scaffold109 flankbed promoter 214539 214570 . - . ID=CGI_10022111; scaffold109 TRF Tandem_Repeat 214539 214570 55 + . . scaffold109 flankbed promoter 363967 364023 . - . ID=CGI_10022113; scaffold109 WUBlastX LINE_L1 363967 364023 26 - . . scaffold109 flankbed promoter 364256 364474 . - . ID=CGI_10022113; scaffold109 WUBlastX LINE_L1-Tx1 364256 367702 1656 - . . scaffold1093 flankbed promoter 92523 92566 . + . ID=CGI_10019788; scaffold1093 TRF Tandem_Repeat 92523 92566 88 + . . scaffold1093 flankbed promoter 127776 127870 . - . ID=CGI_10019791; scaffold1093 TRF Tandem_Repeat 127776 127870 74 + . . scaffold1093 flankbed promoter 127740 127869 . - . ID=CGI_10019791; scaffold1093 TRF Tandem_Repeat 127740 127869 131 + . . scaffold1093 flankbed promoter 320490 320726 . - . ID=CGI_10019797; scaffold1093 TRF Tandem_Repeat 320490 320726 271 + . . scaffold1093 flankbed promoter 320494 320726 . - . ID=CGI_10019797; scaffold1093 TRF Tandem_Repeat 320494 320726 331 + . . scaffold1093 flankbed promoter 323985 324027 . + . ID=CGI_10019798; scaffold1093 TRF Tandem_Repeat 323985 324027 86 + . . scaffold1093 flankbed promoter 362506 362532 . - . ID=CGI_10019802; scaffold1093 TRF Tandem_Repeat 362506 362532 54 + . . scaffold1093 flankbed promoter 362611 362669 . - . ID=CGI_10019802; scaffold1093 TRF Tandem_Repeat 362611 362669 82 + . . scaffold1093 flankbed promoter 362610 362683 . - . ID=CGI_10019802; scaffold1093 TRF Tandem_Repeat 362610 362683 67 + . . scaffold1093 flankbed promoter 362613 362682 . - . ID=CGI_10019802; scaffold1093 TRF Tandem_Repeat 362613 362682 70 + . . scaffold1093 flankbed promoter 362708 362775 . - . ID=CGI_10019802; scaffold1093 TRF Tandem_Repeat 362708 362775 118 + . . scaffold1093 flankbed promoter 369169 369377 . - . ID=CGI_10019804; scaffold1093 TRF Tandem_Repeat 369169 369377 229 + . . scaffold1093 flankbed promoter 369169 369377 . - . ID=CGI_10019804; scaffold1093 TRF Tandem_Repeat 369169 369377 227 + . . scaffold1093 flankbed promoter 369863 370115 . - . ID=CGI_10019804; scaffold1093 WUBlastX LINE_RTE-X 369863 370627 78 - . . scaffold1093 flankbed promoter 369956 370115 . - . ID=CGI_10019804; scaffold1093 WUBlastX LINE_RTE-X 369956 370591 112 - . . scaffold1093 flankbed promoter 531748 532342 . - . ID=CGI_10019812; scaffold1093 TRF Tandem_Repeat 531748 532342 915 + . . scaffold1094 flankbed promoter 38133 38593 . + . ID=CGI_10021808; scaffold1094 WUBlastX DNA_MuDR 37124 38593 472 - . . scaffold1094 flankbed promoter 140975 141018 . + . ID=CGI_10021811; scaffold1094 TRF Tandem_Repeat 140975 141018 88 + . . scaffold1094 flankbed promoter 151213 151363 . + . ID=CGI_10021813; scaffold1094 TRF Tandem_Repeat 151213 151363 70 + . . scaffold1094 flankbed promoter 151214 151364 . + . ID=CGI_10021813; scaffold1094 TRF Tandem_Repeat 151214 151364 131 + . . scaffold1094 flankbed promoter 151215 151429 . + . ID=CGI_10021813; scaffold1094 TRF Tandem_Repeat 151215 151429 122 + . . scaffold1094 flankbed promoter 151245 151429 . + . ID=CGI_10021813; scaffold1094 TRF Tandem_Repeat 151245 151429 133 + . . scaffold1094 flankbed promoter 441823 441919 . + . ID=CGI_10021829; scaffold1094 TRF Tandem_Repeat 441823 441919 133 + . . scaffold1094 flankbed promoter 688262 688294 . + . ID=CGI_10021843; scaffold1094 TRF Tandem_Repeat 688262 688294 66 + . . scaffold1096 flankbed promoter 13329 13353 . - . ID=CGI_10006448; scaffold1096 TRF Tandem_Repeat 13329 13353 50 + . . scaffold1096 flankbed promoter 127013 127108 . + . ID=CGI_10006456; scaffold1096 WUBlastX DNA_TcMar-Fot1 127013 127108 20 + . . scaffold1097 flankbed promoter 15880 16631 . - . ID=CGI_10024506; scaffold1097 TRF Tandem_Repeat 15880 17201 1963 + . . scaffold1097 flankbed promoter 372087 372127 . + . ID=CGI_10024525; scaffold1097 TRF Tandem_Repeat 372087 372127 82 + . . scaffold1097 flankbed promoter 446617 447385 . - . ID=CGI_10024531; scaffold1097 TRF Tandem_Repeat 446617 447411 1288 + . . scaffold1097 flankbed promoter 454400 454432 . + . ID=CGI_10024532; scaffold1097 TRF Tandem_Repeat 454400 454432 66 + . . scaffold1097 flankbed promoter 590467 590665 . - . ID=CGI_10024535; scaffold1097 WUBlastX DNA_TcMar-Tc1 590444 590665 62 - . . scaffold1097 flankbed promoter 590467 590668 . - . ID=CGI_10024535; scaffold1097 WUBlastX DNA_TcMar-Tc1 590390 590668 56 - . . scaffold1097 flankbed promoter 786814 786881 . - . ID=CGI_10024549; scaffold1097 TRF Tandem_Repeat 786814 786881 66 + . . scaffold1097 flankbed promoter 805556 805594 . - . ID=CGI_10024551; scaffold1097 TRF Tandem_Repeat 805556 805594 78 + . . scaffold1098 flankbed promoter 4315 4356 . + . ID=CGI_10010793; scaffold1098 TRF Tandem_Repeat 4315 4356 59 + . . scaffold11 flankbed promoter 182481 182618 . + . ID=CGI_10015530; scaffold11 WUBlastX LINE_Penelope 182481 182618 23 - . . scaffold11 flankbed promoter 183004 183120 . + . ID=CGI_10015530; scaffold11 WUBlastX LINE_Penelope 183004 183120 21 - . . scaffold11 flankbed promoter 311818 311861 . - . ID=CGI_10015535; scaffold11 TRF Tandem_Repeat 311818 311861 88 + . . scaffold11 flankbed promoter 312357 312373 . - . ID=CGI_10015535; scaffold11 TRF Tandem_Repeat 312357 312394 76 + . . scaffold11 flankbed promoter 330399 330491 . - . ID=CGI_10015537; scaffold11 TRF Tandem_Repeat 330399 330491 73 + . . scaffold11 flankbed promoter 330464 330554 . - . ID=CGI_10015537; scaffold11 TRF Tandem_Repeat 330464 330554 65 + . . scaffold110 flankbed promoter 114677 114755 . - . ID=CGI_10008778; scaffold110 TRF Tandem_Repeat 114677 114755 63 + . . scaffold110 flankbed promoter 114677 114755 . + . ID=CGI_10008779; scaffold110 TRF Tandem_Repeat 114677 114755 63 + . . scaffold1100 flankbed promoter 130407 130410 . + . ID=CGI_10009432; scaffold1100 TRF Tandem_Repeat 130234 130410 86 + . . scaffold1100 flankbed promoter 130407 130410 . + . ID=CGI_10009432; scaffold1100 TRF Tandem_Repeat 130234 130410 86 + . . scaffold1100 flankbed promoter 130407 130410 . + . ID=CGI_10009432; scaffold1100 TRF Tandem_Repeat 130236 130410 93 + . . scaffold1101 flankbed promoter 179388 179433 . - . ID=CGI_10023016; scaffold1101 TRF Tandem_Repeat 179388 179433 92 + . . scaffold1101 flankbed promoter 426828 426863 . - . ID=CGI_10023024; scaffold1101 TRF Tandem_Repeat 426828 426863 72 + . . scaffold1101 flankbed promoter 426828 426863 . + . ID=CGI_10023025; scaffold1101 TRF Tandem_Repeat 426828 426863 72 + . . scaffold1101 flankbed promoter 459823 459877 . - . ID=CGI_10023027; scaffold1101 TRF Tandem_Repeat 459823 459877 101 + . . scaffold1103 flankbed promoter 37206 37323 . - . ID=CGI_10004869; scaffold1103 TRF Tandem_Repeat 37206 37323 162 + . . scaffold1104 flankbed promoter 187387 187426 . + . ID=CGI_10020363; scaffold1104 TRF Tandem_Repeat 187387 187426 73 + . . scaffold1104 flankbed promoter 187525 187569 . + . ID=CGI_10020363; scaffold1104 TRF Tandem_Repeat 187525 187569 90 + . . scaffold1104 flankbed promoter 307246 307294 . - . ID=CGI_10020373; scaffold1104 TRF Tandem_Repeat 307246 307294 98 + . . scaffold1104 flankbed promoter 424140 424314 . - . ID=CGI_10020382; scaffold1104 WUBlastX LINE_RTE-BovB 424140 424328 128 + . . scaffold1104 flankbed promoter 424113 424280 . - . ID=CGI_10020382; scaffold1104 WUBlastX LINE_RTE-BovB 424113 424280 62 + . . scaffold1104 flankbed promoter 424140 424314 . - . ID=CGI_10020382; scaffold1104 WUBlastX LINE_RTE-BovB 424140 424472 110 + . . scaffold1104 flankbed promoter 427064 427306 . + . ID=CGI_10020385; scaffold1104 WUBlastX LINE_R2-Hero 427064 427306 57 + . . scaffold1104 flankbed promoter 427144 427461 . + . ID=CGI_10020385; scaffold1104 WUBlastX LINE_R2-Hero 427144 427665 105 + . . scaffold1104 flankbed promoter 489628 490145 . + . ID=CGI_10020389; scaffold1104 WUBlastX LINE_CR1 487983 490145 1666 - . . scaffold1104 flankbed promoter 529086 529268 . - . ID=CGI_10020391; scaffold1104 WUBlastX DNA_IS4EU 529086 529271 69 - . . scaffold1104 flankbed promoter 581072 581105 . + . ID=CGI_10020393; scaffold1104 TRF Tandem_Repeat 581072 581105 68 + . . scaffold1106 flankbed promoter 7010 7039 . - . ID=CGI_10002423; scaffold1106 TRF Tandem_Repeat 7010 7039 51 + . . scaffold1107 flankbed promoter 102757 102986 . + . ID=CGI_10004773; scaffold1107 TRF Tandem_Repeat 102695 102986 485 + . . scaffold1108 flankbed promoter 65059 65854 . - . ID=CGI_10021958; scaffold1108 WUBlastX DNA_En-Spm 65059 66105 74 - . . scaffold1108 flankbed promoter 64855 65844 . - . ID=CGI_10021958; scaffold1108 WUBlastX DNA_En-Spm 63562 65844 1258 - . . scaffold1108 flankbed promoter 138490 138537 . + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 138490 138537 96 + . . scaffold1108 flankbed promoter 246992 247089 . - . ID=CGI_10021968; scaffold1108 TRF Tandem_Repeat 246992 247230 101 + . . scaffold1108 flankbed promoter 266968 267015 . - . ID=CGI_10021969; scaffold1108 TRF Tandem_Repeat 266968 267015 96 + . . scaffold1108 flankbed promoter 711776 711816 . + . ID=CGI_10021991; scaffold1108 TRF Tandem_Repeat 711776 711816 75 + . . scaffold1112 flankbed promoter 180377 180424 . - . ID=CGI_10012405; scaffold1112 TRF Tandem_Repeat 180377 180424 96 + . . scaffold1112 flankbed promoter 180574 180613 . - . ID=CGI_10012405; scaffold1112 TRF Tandem_Repeat 180574 180613 80 + . . scaffold1112 flankbed promoter 180377 180424 . + . ID=CGI_10012406; scaffold1112 TRF Tandem_Repeat 180377 180424 96 + . . scaffold1112 flankbed promoter 180574 180613 . + . ID=CGI_10012406; scaffold1112 TRF Tandem_Repeat 180574 180613 80 + . . scaffold1112 flankbed promoter 200068 200150 . - . ID=CGI_10012407; scaffold1112 TRF Tandem_Repeat 200068 200150 150 + . . scaffold1112 flankbed promoter 200068 200150 . + . ID=CGI_10012408; scaffold1112 TRF Tandem_Repeat 200068 200150 150 + . . scaffold1112 flankbed promoter 226725 226815 . - . ID=CGI_10012410; scaffold1112 TRF Tandem_Repeat 226725 226815 74 + . . scaffold1112 flankbed promoter 305787 305819 . - . ID=CGI_10012411; scaffold1112 TRF Tandem_Repeat 305787 305819 66 + . . scaffold1113 flankbed promoter 18740 18767 . + . ID=CGI_10002451; scaffold1113 TRF Tandem_Repeat 18382 18767 106 + . . scaffold1113 flankbed promoter 18740 18755 . + . ID=CGI_10002451; scaffold1113 TRF Tandem_Repeat 18579 18755 116 + . . scaffold1113 flankbed promoter 18740 18769 . + . ID=CGI_10002451; scaffold1113 TRF Tandem_Repeat 18621 18769 89 + . . scaffold1113 flankbed promoter 26507 26536 . + . ID=CGI_10002453; scaffold1113 TRF Tandem_Repeat 26507 26536 60 + . . scaffold1116 flankbed promoter 57955 58003 . + . ID=CGI_10009122; scaffold1116 TRF Tandem_Repeat 57934 58003 140 + . . scaffold1117 flankbed promoter 7126 7170 . - . ID=CGI_10002968; scaffold1117 WUBlastX LINE_Proto2 7126 7170 20 - . . scaffold1117 flankbed promoter 7784 8049 . - . ID=CGI_10002968; scaffold1117 WUBlastX LINE_L1 7784 8485 151 - . . scaffold1117 flankbed promoter 7414 7479 . - . ID=CGI_10002968; scaffold1117 WUBlastX LINE_L1-Tx1 7414 7479 30 - . . scaffold1117 flankbed promoter 7478 7978 . - . ID=CGI_10002968; scaffold1117 WUBlastX LINE_L1-Tx1 7478 7978 122 - . . scaffold1117 flankbed promoter 7979 8049 . - . ID=CGI_10002968; scaffold1117 WUBlastX LINE_L1-Tx1 7979 8488 177 - . . scaffold1117 flankbed promoter 11980 12648 . - . ID=CGI_10002969; scaffold1117 WUBlastX LINE_L1-Tx1 11980 12648 76 - . . scaffold1119 flankbed promoter 76281 76308 . + . ID=CGI_10009600; scaffold1119 TRF Tandem_Repeat 76281 76308 56 + . . scaffold1119 flankbed promoter 230001 230050 . - . ID=CGI_10009611; scaffold1119 TRF Tandem_Repeat 230001 230050 100 + . . scaffold1121 flankbed promoter 106188 106239 . + . ID=CGI_10006504; scaffold1121 TRF Tandem_Repeat 106188 106239 86 + . . scaffold1123 flankbed promoter 40595 40648 . + . ID=CGI_10018731; scaffold1123 TRF Tandem_Repeat 40595 40648 108 + . . scaffold1123 flankbed promoter 149135 149698 . + . ID=CGI_10018733; scaffold1123 WUBlastX DNA_TcMar-Marin 149081 149698 155 - . . scaffold1123 flankbed promoter 335552 335719 . - . ID=CGI_10018737; scaffold1123 WUBlastX DNA_IS4EU 335225 335719 26 - . . scaffold1123 flankbed promoter 335552 335704 . - . ID=CGI_10018737; scaffold1123 WUBlastX DNA_Kolobok-IS4 335354 335704 68 - . . scaffold1123 flankbed promoter 568222 568227 . - . ID=CGI_10018747; scaffold1123 TRF Tandem_Repeat 568222 568267 83 + . . scaffold1125 flankbed promoter 137277 137312 . - . ID=CGI_10012332; scaffold1125 TRF Tandem_Repeat 137277 137312 72 + . . scaffold1125 flankbed promoter 239271 239307 . - . ID=CGI_10012341; scaffold1125 TRF Tandem_Repeat 239271 239307 65 + . . scaffold1127 flankbed promoter 167382 167735 . - . ID=CGI_10010653; scaffold1127 WUBlastX DNA_Kolobok-Hyd 167382 167735 47 - . . scaffold113 flankbed promoter 41718 41813 . - . ID=CGI_10021281; scaffold113 TRF Tandem_Repeat 41718 41813 192 + . . scaffold113 flankbed promoter 52153 52194 . + . ID=CGI_10021282; scaffold113 TRF Tandem_Repeat 52153 52194 59 + . . scaffold113 flankbed promoter 52732 52824 . + . ID=CGI_10021282; scaffold113 WUBlastX LINE_RTE-X 52732 52863 22 + . . scaffold113 flankbed promoter 52311 52610 . + . ID=CGI_10021282; scaffold113 WUBlastX LINE_RTE-X 52311 52610 79 + . . scaffold113 flankbed promoter 52248 52613 . + . ID=CGI_10021282; scaffold113 WUBlastX LINE_RTE-X 52248 52613 61 + . . scaffold113 flankbed promoter 52311 52739 . + . ID=CGI_10021282; scaffold113 WUBlastX LINE_CR1 52311 52739 23 + . . scaffold113 flankbed promoter 52732 52863 . + . ID=CGI_10021283; scaffold113 WUBlastX LINE_RTE-X 52732 52863 22 + . . scaffold113 flankbed promoter 52720 52739 . + . ID=CGI_10021283; scaffold113 WUBlastX LINE_CR1 52311 52739 23 + . . scaffold113 flankbed promoter 256533 256569 . - . ID=CGI_10021289; scaffold113 TRF Tandem_Repeat 256533 256569 74 + . . scaffold113 flankbed promoter 591590 591760 . - . ID=CGI_10021294; scaffold113 WUBlastX DNA_hAT-Tag1 591590 591760 49 - . . scaffold113 flankbed promoter 591155 591499 . - . ID=CGI_10021294; scaffold113 WUBlastX DNA_hAT-Tag1 591155 591499 79 + . . scaffold113 flankbed promoter 590808 590951 . - . ID=CGI_10021294; scaffold113 WUBlastX DNA_hAT-Tag1 590382 590951 70 - . . scaffold113 flankbed promoter 635065 635115 . + . ID=CGI_10021300; scaffold113 TRF Tandem_Repeat 635065 635115 102 + . . scaffold1131 flankbed promoter 17101 17217 . - . ID=CGI_10013494; scaffold1131 WUBlastX LINE_RTE-X 17101 17718 162 - . . scaffold1131 flankbed promoter 57762 57818 . + . ID=CGI_10013498; scaffold1131 TRF Tandem_Repeat 57762 57818 114 + . . scaffold1132 flankbed promoter 364812 364823 . - . ID=CGI_10023316; scaffold1132 WUBlastX LTR_Gypsy 364812 365759 632 - . . scaffold1132 flankbed promoter 364626 364823 . - . ID=CGI_10023316; scaffold1132 WUBlastX LTR_Gypsy 364626 365684 134 - . . scaffold1132 flankbed promoter 448690 448787 . + . ID=CGI_10023320; scaffold1132 TRF Tandem_Repeat 448690 448787 81 + . . scaffold1132 flankbed promoter 470465 470515 . + . ID=CGI_10023321; scaffold1132 TRF Tandem_Repeat 470465 470515 102 + . . scaffold1132 flankbed promoter 500080 500121 . - . ID=CGI_10023322; scaffold1132 TRF Tandem_Repeat 500080 500121 84 + . . scaffold1132 flankbed promoter 500741 500793 . - . ID=CGI_10023322; scaffold1132 TRF Tandem_Repeat 500741 500793 106 + . . scaffold1132 flankbed promoter 669890 669942 . - . ID=CGI_10023326; scaffold1132 TRF Tandem_Repeat 669890 669942 106 + . . scaffold1132 flankbed promoter 685027 685271 . - . ID=CGI_10023327; scaffold1132 TRF Tandem_Repeat 685027 685271 271 + . . scaffold1132 flankbed promoter 799365 799414 . + . ID=CGI_10023335; scaffold1132 TRF Tandem_Repeat 799365 799414 100 + . . scaffold1134 flankbed promoter 82725 82919 . + . ID=CGI_10004508; scaffold1134 WUBlastX LTR_Gypsy-Cigr 82725 82919 96 + . . scaffold1134 flankbed promoter 82436 82684 . + . ID=CGI_10004508; scaffold1134 WUBlastX LTR_Gypsy 82436 82684 178 + . . scaffold1134 flankbed promoter 82316 82693 . + . ID=CGI_10004508; scaffold1134 WUBlastX LTR_Gypsy 82316 82693 87 + . . scaffold1134 flankbed promoter 82445 82786 . + . ID=CGI_10004508; scaffold1134 WUBlastX LTR_Gypsy 82445 82786 119 + . . scaffold1136 flankbed promoter 45110 45202 . + . ID=CGI_10003080; scaffold1136 WUBlastX LINE_RTE-X 45110 45202 24 + . . scaffold1138 flankbed promoter 174337 174465 . + . ID=CGI_10015372; scaffold1138 WUBlastX LTR_Gypsy 174337 174477 34 + . . scaffold1138 flankbed promoter 192155 192251 . - . ID=CGI_10015373; scaffold1138 WUBlastX LINE_Jockey 192033 192251 33 - . . scaffold1138 flankbed promoter 192155 192215 . - . ID=CGI_10015373; scaffold1138 WUBlastX LINE_L2 192030 192215 35 - . . scaffold1138 flankbed promoter 185841 185879 . + . ID=CGI_10015374; scaffold1138 WUBlastX LINE_CR1 185523 185879 70 + . . scaffold1138 flankbed promoter 185841 185960 . + . ID=CGI_10015374; scaffold1138 WUBlastX LINE_L2 185523 185960 29 + . . scaffold1138 flankbed promoter 299206 299233 . - . ID=CGI_10015377; scaffold1138 TRF Tandem_Repeat 299206 299233 56 + . . scaffold1140 flankbed promoter 3306 3826 . - . ID=CGI_10001239; scaffold1140 WUBlastX DNA_Crypton 3306 3932 152 + . . scaffold1142 flankbed promoter 106515 106724 . + . ID=CGI_10008531; scaffold1142 WUBlastX LINE_RTE-X 106515 106724 105 + . . scaffold1142 flankbed promoter 106501 106518 . + . ID=CGI_10008531; scaffold1142 WUBlastX LINE_RTE-X 106321 106518 119 + . . scaffold1142 flankbed promoter 106732 106968 . + . ID=CGI_10008531; scaffold1142 WUBlastX LINE_RTE-X 106732 106968 50 + . . scaffold1143 flankbed promoter 213087 213390 . - . ID=CGI_10009142; scaffold1143 WUBlastX LINE_L1-Tx1 213087 213824 434 + . . scaffold1143 flankbed promoter 218717 218742 . + . ID=CGI_10009144; scaffold1143 TRF Tandem_Repeat 218717 218742 52 + . . scaffold1144 flankbed promoter 78833 79006 . - . ID=CGI_10013957; scaffold1144 WUBlastX LTR_ERV1 78833 79006 23 - . . scaffold1144 flankbed promoter 360688 360718 . + . ID=CGI_10013965; scaffold1144 TRF Tandem_Repeat 360688 360718 62 + . . scaffold1144 flankbed promoter 360734 360792 . + . ID=CGI_10013965; scaffold1144 TRF Tandem_Repeat 360734 360792 75 + . . scaffold1149 flankbed promoter 20776 20937 . + . ID=CGI_10023445; scaffold1149 TRF Tandem_Repeat 20400 20937 481 + . . scaffold1149 flankbed promoter 85967 86179 . - . ID=CGI_10023450; scaffold1149 WUBlastX RC_Helitron 85967 86179 55 - . . scaffold1149 flankbed promoter 86419 86792 . - . ID=CGI_10023450; scaffold1149 WUBlastX RC_Helitron 86419 88557 1137 - . . scaffold1149 flankbed promoter 85961 86386 . - . ID=CGI_10023450; scaffold1149 WUBlastX RC_Helitron 85961 86386 50 - . . scaffold1149 flankbed promoter 122566 123152 . + . ID=CGI_10023452; scaffold1149 WUBlastX LINE_L1-Tx1 119352 123152 1805 + . . scaffold1149 flankbed promoter 220812 220855 . - . ID=CGI_10023460; scaffold1149 TRF Tandem_Repeat 220812 220855 88 + . . scaffold1149 flankbed promoter 230996 231037 . + . ID=CGI_10023462; scaffold1149 TRF Tandem_Repeat 230996 231037 84 + . . scaffold1149 flankbed promoter 285069 285102 . - . ID=CGI_10023463; scaffold1149 TRF Tandem_Repeat 285069 285102 68 + . . scaffold1149 flankbed promoter 520529 520588 . - . ID=CGI_10023469; scaffold1149 TRF Tandem_Repeat 520529 520588 111 + . . scaffold1149 flankbed promoter 538453 538554 . - . ID=CGI_10023472; scaffold1149 TRF Tandem_Repeat 538377 538554 76 + . . scaffold1149 flankbed promoter 538453 538579 . - . ID=CGI_10023472; scaffold1149 TRF Tandem_Repeat 538346 538579 362 + . . scaffold1149 flankbed promoter 548316 548333 . - . ID=CGI_10023473; scaffold1149 WUBlastX DNA_Harbinger 548196 548333 47 - . . scaffold1149 flankbed promoter 613373 613426 . - . ID=CGI_10023475; scaffold1149 TRF Tandem_Repeat 613373 613426 99 + . . scaffold115 flankbed promoter 178384 178975 . + . ID=CGI_10021382; scaffold115 TRF Tandem_Repeat 178384 178975 630 + . . scaffold115 flankbed promoter 188819 188912 . + . ID=CGI_10021384; scaffold115 TRF Tandem_Repeat 188819 188912 125 + . . scaffold115 flankbed promoter 489126 489973 . - . ID=CGI_10021399; scaffold115 TRF Tandem_Repeat 489126 489973 1471 + . . scaffold115 flankbed promoter 649848 649971 . + . ID=CGI_10021411; scaffold115 TRF Tandem_Repeat 649848 649971 160 + . . scaffold1154 flankbed promoter 376776 376818 . - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Gypsy 376776 377243 175 + . . scaffold1154 flankbed promoter 376654 376818 . - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Gypsy 376654 376860 88 + . . scaffold1154 flankbed promoter 377419 377829 . + . ID=CGI_10026166; scaffold1154 WUBlastX LTR_Gypsy-Cigr 377419 377829 70 + . . scaffold1154 flankbed promoter 377249 377398 . + . ID=CGI_10026166; scaffold1154 WUBlastX LTR_Gypsy 377249 377398 35 + . . scaffold1154 flankbed promoter 377234 377374 . + . ID=CGI_10026166; scaffold1154 WUBlastX LTR_Gypsy-Cigr 377234 377374 112 + . . scaffold1154 flankbed promoter 377398 377727 . + . ID=CGI_10026166; scaffold1154 WUBlastX LTR_Gypsy-Cigr 377398 377727 126 + . . scaffold1154 flankbed promoter 377055 377243 . + . ID=CGI_10026166; scaffold1154 WUBlastX LTR_Gypsy 376866 377243 310 + . . scaffold1154 flankbed promoter 377055 377243 . + . ID=CGI_10026166; scaffold1154 WUBlastX LTR_Gypsy 376776 377243 175 + . . scaffold1154 flankbed promoter 407302 407604 . - . ID=CGI_10026168; scaffold1154 WUBlastX DNA_Harbinger 407302 407604 126 - . . scaffold1154 flankbed promoter 854277 854383 . + . ID=CGI_10026194; scaffold1154 WUBlastX DNA_Harbinger 854162 854383 93 - . . scaffold1154 flankbed promoter 854277 854383 . + . ID=CGI_10026194; scaffold1154 WUBlastX DNA_Harbinger 854063 854383 59 - . . scaffold1154 flankbed promoter 854277 854431 . + . ID=CGI_10026194; scaffold1154 WUBlastX DNA_Harbinger 854192 854431 55 - . . scaffold1154 flankbed promoter 1030436 1030493 . + . ID=CGI_10026203; scaffold1154 WUBlastX LTR_Ngaro 1029714 1030493 176 - . . scaffold1154 flankbed promoter 1154101 1154238 . + . ID=CGI_10026209; scaffold1154 WUBlastX LTR_Gypsy 1153897 1154238 83 + . . scaffold1154 flankbed promoter 1154798 1155100 . + . ID=CGI_10026209; scaffold1154 WUBlastX LTR_Gypsy 1154798 1155307 46 + . . scaffold1155 flankbed promoter 89430 89703 . - . ID=CGI_10007796; scaffold1155 WUBlastX LINE_L2 89430 90029 200 - . . scaffold1157 flankbed promoter 205927 206389 . + . ID=CGI_10011219; scaffold1157 WUBlastX LINE_Jockey 205304 206389 127 - . . scaffold1157 flankbed promoter 205927 206209 . + . ID=CGI_10011219; scaffold1157 WUBlastX LINE_RTE-X 205247 206209 283 - . . scaffold1157 flankbed promoter 206924 206926 . + . ID=CGI_10011219; scaffold1157 WUBlastX LINE_L1-Tx1 206924 207049 20 - . . scaffold1159 flankbed promoter 96334 96458 . + . ID=CGI_10007975; scaffold1159 TRF Tandem_Repeat 96334 96458 223 + . . scaffold116 flankbed promoter 34644 34946 . - . ID=CGI_10009410; scaffold116 WUBlastX LTR_Gypsy 34644 34946 117 - . . scaffold116 flankbed promoter 34587 34949 . - . ID=CGI_10009410; scaffold116 WUBlastX LTR_Gypsy-Cigr 34587 34949 97 - . . scaffold116 flankbed promoter 34833 34946 . - . ID=CGI_10009411; scaffold116 WUBlastX LTR_Gypsy 34644 34946 117 - . . scaffold116 flankbed promoter 34833 34949 . - . ID=CGI_10009411; scaffold116 WUBlastX LTR_Gypsy-Cigr 34587 34949 97 - . . scaffold1160 flankbed promoter 582 1487 . - . ID=CGI_10015335; scaffold1160 WUBlastX LINE_RTE-X 582 1757 176 - . . scaffold1160 flankbed promoter 873 1487 . - . ID=CGI_10015335; scaffold1160 WUBlastX LINE_RTE-X 873 1757 210 - . . scaffold1160 flankbed promoter 26965 27035 . + . ID=CGI_10015339; scaffold1160 TRF Tandem_Repeat 26965 27035 97 + . . scaffold1160 flankbed promoter 248753 248891 . - . ID=CGI_10015352; scaffold1160 TRF Tandem_Repeat 248753 248891 188 + . . scaffold1160 flankbed promoter 404438 404811 . - . ID=CGI_10015361; scaffold1160 TRF Tandem_Repeat 404438 405468 373 + . . scaffold1163 flankbed promoter 129760 130053 . - . ID=CGI_10009342; scaffold1163 TRF Tandem_Repeat 129760 130100 343 + . . scaffold1163 flankbed promoter 129760 130053 . - . ID=CGI_10009342; scaffold1163 TRF Tandem_Repeat 129760 130121 370 + . . scaffold1163 flankbed promoter 147752 147801 . + . ID=CGI_10009346; scaffold1163 TRF Tandem_Repeat 147752 147801 100 + . . scaffold1163 flankbed promoter 147825 147878 . + . ID=CGI_10009346; scaffold1163 TRF Tandem_Repeat 147825 147878 54 + . . scaffold1164 flankbed promoter 40383 40450 . - . ID=CGI_10012997; scaffold1164 TRF Tandem_Repeat 40383 40450 136 + . . scaffold1166 flankbed promoter 3961 4092 . + . ID=CGI_10006284; scaffold1166 TRF Tandem_Repeat 3961 4092 104 + . . scaffold1166 flankbed promoter 63595 63640 . + . ID=CGI_10006286; scaffold1166 TRF Tandem_Repeat 63595 63640 92 + . . scaffold1171 flankbed promoter 423 475 . + . ID=CGI_10002854; scaffold1171 TRF Tandem_Repeat 423 475 106 + . . scaffold1171 flankbed promoter 11152 11829 . + . ID=CGI_10002857; scaffold1171 WUBlastX LINE_CR1 11152 11829 200 + . . scaffold1171 flankbed promoter 11104 12018 . + . ID=CGI_10002857; scaffold1171 WUBlastX LINE_L1-Tx1 11104 12018 160 + . . scaffold1173 flankbed promoter 10586 10646 . - . ID=CGI_10005743; scaffold1173 TRF Tandem_Repeat 10586 10646 115 + . . scaffold1174 flankbed promoter 253988 254405 . - . ID=CGI_10026031; scaffold1174 WUBlastX LINE_RTE-BovB 253947 254405 39 - . . scaffold1174 flankbed promoter 254745 254987 . - . ID=CGI_10026031; scaffold1174 WUBlastX LINE_RTE-X 254745 255248 155 - . . scaffold1174 flankbed promoter 254724 254987 . - . ID=CGI_10026031; scaffold1174 WUBlastX LINE_CR1-L2 254724 255425 112 - . . scaffold1174 flankbed promoter 254832 254987 . - . ID=CGI_10026031; scaffold1174 WUBlastX LINE_Jockey 254832 255227 160 - . . scaffold1174 flankbed promoter 254022 254987 . - . ID=CGI_10026031; scaffold1174 WUBlastX LINE_RTE-X 254022 255248 148 - . . scaffold1174 flankbed promoter 393062 393155 . - . ID=CGI_10026036; scaffold1174 TRF Tandem_Repeat 393062 393155 125 + . . scaffold1174 flankbed promoter 393894 393925 . - . ID=CGI_10026036; scaffold1174 TRF Tandem_Repeat 393894 393937 79 + . . scaffold1174 flankbed promoter 424412 424450 . + . ID=CGI_10026039; scaffold1174 TRF Tandem_Repeat 424412 424450 78 + . . scaffold1174 flankbed promoter 441896 441994 . + . ID=CGI_10026041; scaffold1174 WUBlastX LINE_CR1 441896 441994 27 - . . scaffold1174 flankbed promoter 471885 471955 . - . ID=CGI_10026043; scaffold1174 TRF Tandem_Repeat 470786 471955 455 + . . scaffold1174 flankbed promoter 472313 472441 . - . ID=CGI_10026043; scaffold1174 WUBlastX LTR_Gypsy 472313 472441 58 - . . scaffold1174 flankbed promoter 472337 472462 . - . ID=CGI_10026043; scaffold1174 WUBlastX LTR_Gypsy 472337 472462 68 - . . scaffold1174 flankbed promoter 471985 472326 . - . ID=CGI_10026043; scaffold1174 WUBlastX LTR_Gypsy-Cigr 471985 472326 39 - . . scaffold1174 flankbed promoter 465632 465659 . + . ID=CGI_10026044; scaffold1174 TRF Tandem_Repeat 465632 465659 56 + . . scaffold1174 flankbed promoter 472313 472441 . + . ID=CGI_10026045; scaffold1174 WUBlastX LTR_Gypsy 472313 472441 58 - . . scaffold1174 flankbed promoter 472337 472462 . + . ID=CGI_10026045; scaffold1174 WUBlastX LTR_Gypsy 472337 472462 68 - . . scaffold1174 flankbed promoter 472195 472326 . + . ID=CGI_10026045; scaffold1174 WUBlastX LTR_Gypsy-Cigr 471985 472326 39 - . . scaffold1174 flankbed promoter 628001 628200 . - . ID=CGI_10026057; scaffold1174 TRF Tandem_Repeat 628001 628716 763 + . . scaffold1174 flankbed promoter 628001 628716 . + . ID=CGI_10026059; scaffold1174 TRF Tandem_Repeat 628001 628716 763 + . . scaffold1174 flankbed promoter 773730 773818 . + . ID=CGI_10026065; scaffold1174 TRF Tandem_Repeat 773730 773818 178 + . . scaffold1174 flankbed promoter 801218 801298 . + . ID=CGI_10026068; scaffold1174 TRF Tandem_Repeat 801218 801298 162 + . . scaffold1174 flankbed promoter 862201 862232 . - . ID=CGI_10026069; scaffold1174 TRF Tandem_Repeat 862201 862232 55 + . . scaffold1174 flankbed promoter 916373 916417 . + . ID=CGI_10026072; scaffold1174 TRF Tandem_Repeat 916373 916417 90 + . . scaffold1174 flankbed promoter 1071869 1072093 . + . ID=CGI_10026080; scaffold1174 WUBlastX DNA_MuDR 1071869 1072093 86 + . . scaffold1174 flankbed promoter 1072363 1072563 . + . ID=CGI_10026080; scaffold1174 WUBlastX DNA_MuDR 1072363 1072608 32 + . . scaffold1174 flankbed promoter 1071827 1072033 . + . ID=CGI_10026080; scaffold1174 WUBlastX DNA_MuDR 1071827 1072033 52 + . . scaffold1174 flankbed promoter 1071734 1072042 . + . ID=CGI_10026080; scaffold1174 WUBlastX DNA_MuDR 1071734 1072042 32 + . . scaffold1174 flankbed promoter 1079209 1079402 . + . ID=CGI_10026081; scaffold1174 WUBlastX DNA_En-Spm 1078824 1079402 46 + . . scaffold1177 flankbed promoter 73651 73670 . + . ID=CGI_10003914; scaffold1177 TRF Tandem_Repeat 73629 73670 50 + . . scaffold1179 flankbed promoter 79154 79287 . + . ID=CGI_10027341; scaffold1179 TRF Tandem_Repeat 79154 79287 110 + . . scaffold1179 flankbed promoter 122097 122126 . - . ID=CGI_10027343; scaffold1179 TRF Tandem_Repeat 122097 122126 51 + . . scaffold1179 flankbed promoter 232377 232430 . + . ID=CGI_10027349; scaffold1179 TRF Tandem_Repeat 232131 232430 422 + . . scaffold1179 flankbed promoter 392057 392137 . - . ID=CGI_10027362; scaffold1179 TRF Tandem_Repeat 392057 392137 162 + . . scaffold1179 flankbed promoter 450050 450105 . - . ID=CGI_10027366; scaffold1179 WUBlastX DNA_Sola 450050 450712 133 + . . scaffold1179 flankbed promoter 465182 465226 . - . ID=CGI_10027368; scaffold1179 TRF Tandem_Repeat 465182 465226 72 + . . scaffold1179 flankbed promoter 465182 465226 . + . ID=CGI_10027369; scaffold1179 TRF Tandem_Repeat 465182 465226 72 + . . scaffold1179 flankbed promoter 481237 481758 . - . ID=CGI_10027372; scaffold1179 WUBlastX LINE_RTE-X 481237 481758 125 + . . scaffold1179 flankbed promoter 480814 480819 . - . ID=CGI_10027372; scaffold1179 WUBlastX LINE_RTE-X 480682 480819 24 + . . scaffold1179 flankbed promoter 1035523 1035557 . + . ID=CGI_10027396; scaffold1179 TRF Tandem_Repeat 1035503 1035557 110 + . . scaffold1179 flankbed promoter 1149011 1149069 . - . ID=CGI_10027408; scaffold1179 TRF Tandem_Repeat 1149011 1149069 118 + . . scaffold118 flankbed promoter 38294 38343 . + . ID=CGI_10004580; scaffold118 TRF Tandem_Repeat 38294 38343 55 + . . scaffold118 flankbed promoter 63591 63633 . + . ID=CGI_10004583; scaffold118 TRF Tandem_Repeat 63591 63633 86 + . . scaffold1180 flankbed promoter 69214 69987 . - . ID=CGI_10005982; scaffold1180 WUBlastX LTR_Gypsy-Cigr 69214 69987 295 + . . scaffold1180 flankbed promoter 137384 137687 . + . ID=CGI_10005986; scaffold1180 WUBlastX DNA_TcMar-Tc1 137325 137687 111 - . . scaffold1186 flankbed promoter 186884 186918 . + . ID=CGI_10010597; scaffold1186 TRF Tandem_Repeat 186884 186918 70 + . . scaffold1187 flankbed promoter 69681 69723 . - . ID=CGI_10004158; scaffold1187 TRF Tandem_Repeat 69681 69723 50 + . . scaffold1187 flankbed promoter 72029 72106 . + . ID=CGI_10004159; scaffold1187 WUBlastX LINE_L1-Tx1 72029 72106 30 + . . scaffold1187 flankbed promoter 71558 71698 . + . ID=CGI_10004159; scaffold1187 WUBlastX LINE_L1 71558 71698 81 + . . scaffold1187 flankbed promoter 71558 71761 . + . ID=CGI_10004159; scaffold1187 WUBlastX LINE_L1-Tx1 71558 71761 37 + . . scaffold1188 flankbed promoter 157906 158491 . - . ID=CGI_10025459; scaffold1188 WUBlastX LTR_Gypsy 157906 159177 523 - . . scaffold1188 flankbed promoter 157734 157919 . - . ID=CGI_10025459; scaffold1188 WUBlastX LTR_Copia 157734 157919 27 - . . scaffold1188 flankbed promoter 157927 158491 . - . ID=CGI_10025459; scaffold1188 WUBlastX LTR_Gypsy-Cigr 157927 159003 675 - . . scaffold1188 flankbed promoter 176925 177023 . - . ID=CGI_10025460; scaffold1188 WUBlastX LTR_Gypsy 176592 177023 51 - . . scaffold1188 flankbed promoter 306336 307139 . + . ID=CGI_10025469; scaffold1188 WUBlastX LTR_Ngaro 306237 307139 411 + . . scaffold1188 flankbed promoter 326240 326269 . - . ID=CGI_10025470; scaffold1188 TRF Tandem_Repeat 326240 326269 51 + . . scaffold1188 flankbed promoter 332400 332457 . - . ID=CGI_10025472; scaffold1188 TRF Tandem_Repeat 332400 332457 107 + . . scaffold1188 flankbed promoter 392714 392758 . - . ID=CGI_10025474; scaffold1188 TRF Tandem_Repeat 392714 392758 81 + . . scaffold1188 flankbed promoter 392820 392867 . - . ID=CGI_10025474; scaffold1188 TRF Tandem_Repeat 392820 392867 96 + . . scaffold1188 flankbed promoter 393108 393138 . - . ID=CGI_10025474; scaffold1188 TRF Tandem_Repeat 393108 393138 62 + . . scaffold1188 flankbed promoter 787383 787430 . + . ID=CGI_10025502; scaffold1188 TRF Tandem_Repeat 787383 787430 60 + . . scaffold1188 flankbed promoter 987425 987476 . - . ID=CGI_10025513; scaffold1188 TRF Tandem_Repeat 987425 987476 104 + . . scaffold1189 flankbed promoter 23795 23834 . - . ID=CGI_10023792; scaffold1189 TRF Tandem_Repeat 23795 23834 62 + . . scaffold1189 flankbed promoter 24042 24047 . - . ID=CGI_10023792; scaffold1189 TRF Tandem_Repeat 24042 24099 116 + . . scaffold1189 flankbed promoter 134660 135058 . + . ID=CGI_10023800; scaffold1189 WUBlastX LINE_L2 134588 135058 116 - . . scaffold1189 flankbed promoter 134839 134955 . + . ID=CGI_10023800; scaffold1189 WUBlastX LINE_L2 134839 134955 116 - . . scaffold1189 flankbed promoter 233633 233698 . - . ID=CGI_10023805; scaffold1189 WUBlastX LINE_CR1-L2 233633 234163 181 - . . scaffold1189 flankbed promoter 233314 233698 . - . ID=CGI_10023805; scaffold1189 WUBlastX LINE_L2 233314 233886 96 - . . scaffold1189 flankbed promoter 247353 247402 . + . ID=CGI_10023806; scaffold1189 TRF Tandem_Repeat 247353 247402 73 + . . scaffold1189 flankbed promoter 247400 247456 . + . ID=CGI_10023806; scaffold1189 TRF Tandem_Repeat 247400 247456 114 + . . scaffold1189 flankbed promoter 287710 288200 . + . ID=CGI_10023808; scaffold1189 WUBlastX LINE_R2-Hero 287655 288200 133 - . . scaffold1189 flankbed promoter 537900 538802 . + . ID=CGI_10023821; scaffold1189 WUBlastX LINE_L1-Tx1 536601 538802 859 + . . scaffold1189 flankbed promoter 774153 774281 . + . ID=CGI_10023833; scaffold1189 WUBlastX LINE_RTE-X 774153 774281 38 - . . scaffold1189 flankbed promoter 774029 774130 . + . ID=CGI_10023833; scaffold1189 WUBlastX LINE_RTE-X 774029 774130 46 - . . scaffold1189 flankbed promoter 773640 773863 . + . ID=CGI_10023833; scaffold1189 WUBlastX LINE_RTE-X 773366 773863 103 - . . scaffold1189 flankbed promoter 774029 774160 . + . ID=CGI_10023833; scaffold1189 WUBlastX LINE_RTE-X 774029 774160 27 - . . scaffold1189 flankbed promoter 773640 773947 . + . ID=CGI_10023833; scaffold1189 WUBlastX LINE_RTE-X 773453 773947 69 - . . scaffold1194 flankbed promoter 3710 4478 . - . ID=CGI_10001327; scaffold1194 WUBlastX LINE_CR1 3710 4483 190 - . . scaffold1194 flankbed promoter 3479 3886 . - . ID=CGI_10001327; scaffold1194 WUBlastX LINE_I 3293 3886 23 - . . scaffold1194 flankbed promoter 3554 3883 . - . ID=CGI_10001327; scaffold1194 WUBlastX LINE_L1 3554 3883 28 - . . scaffold1195 flankbed promoter 24613 24831 . - . ID=CGI_10012091; scaffold1195 TRF Tandem_Repeat 24613 24831 388 + . . scaffold1195 flankbed promoter 49365 49559 . + . ID=CGI_10012094; scaffold1195 WUBlastX LINE_RTE-X 49365 49559 83 + . . scaffold1195 flankbed promoter 49183 49393 . + . ID=CGI_10012094; scaffold1195 WUBlastX LINE_RTE-X 48905 49393 133 + . . scaffold1195 flankbed promoter 296721 296756 . - . ID=CGI_10012102; scaffold1195 TRF Tandem_Repeat 296721 296756 56 + . . scaffold1199 flankbed promoter 101428 101467 . - . ID=CGI_10005926; scaffold1199 WUBlastX LTR_Gypsy 101428 101718 98 + . . scaffold1199 flankbed promoter 101322 101465 . - . ID=CGI_10005926; scaffold1199 WUBlastX LTR_Gypsy 101322 101465 61 + . . scaffold1199 flankbed promoter 141373 141450 . - . ID=CGI_10005932; scaffold1199 WUBlastX DNA_IS4EU 141064 141450 59 - . . scaffold12 flankbed promoter 77362 77395 . - . ID=CGI_10018017; scaffold12 TRF Tandem_Repeat 77362 77395 59 + . . scaffold12 flankbed promoter 193904 194203 . + . ID=CGI_10018030; scaffold12 WUBlastX DNA_TcMar-Tc1 193904 194203 70 - . . scaffold12 flankbed promoter 210924 211061 . - . ID=CGI_10018031; scaffold12 WUBlastX LINE_R1 210924 211061 31 - . . scaffold12 flankbed promoter 319945 319981 . - . ID=CGI_10018039; scaffold12 TRF Tandem_Repeat 319945 319981 74 + . . scaffold12 flankbed promoter 325477 325517 . + . ID=CGI_10018042; scaffold12 TRF Tandem_Repeat 325475 325517 86 + . . scaffold12 flankbed promoter 500744 500996 . - . ID=CGI_10018052; scaffold12 TRF Tandem_Repeat 500744 500996 364 + . . scaffold120 flankbed promoter 312964 313008 . - . ID=CGI_10017538; scaffold120 TRF Tandem_Repeat 312964 313008 90 + . . scaffold120 flankbed promoter 487809 487864 . + . ID=CGI_10017550; scaffold120 TRF Tandem_Repeat 487809 487864 112 + . . scaffold1200 flankbed promoter 41388 41783 . + . ID=CGI_10007616; scaffold1200 WUBlastX LINE_RTE-X 41388 41783 72 - . . scaffold1203 flankbed promoter 2710 2751 . + . ID=CGI_10010414; scaffold1203 TRF Tandem_Repeat 2710 2751 59 + . . scaffold1203 flankbed promoter 110008 110261 . - . ID=CGI_10010425; scaffold1203 TRF Tandem_Repeat 110008 110261 152 + . . scaffold1203 flankbed promoter 110001 110268 . - . ID=CGI_10010425; scaffold1203 TRF Tandem_Repeat 110001 110268 387 + . . scaffold1203 flankbed promoter 110319 110397 . - . ID=CGI_10010425; scaffold1203 TRF Tandem_Repeat 110319 110550 86 + . . scaffold1203 flankbed promoter 110316 110397 . - . ID=CGI_10010425; scaffold1203 TRF Tandem_Repeat 110316 110550 138 + . . scaffold1203 flankbed promoter 148295 148495 . + . ID=CGI_10010429; scaffold1203 WUBlastX LINE_RTE-X 148295 148495 63 - . . scaffold1203 flankbed promoter 148289 148528 . + . ID=CGI_10010429; scaffold1203 WUBlastX LINE_RTE-X 148289 148528 39 - . . scaffold1203 flankbed promoter 197168 197208 . - . ID=CGI_10010434; scaffold1203 TRF Tandem_Repeat 197168 197208 82 + . . scaffold1203 flankbed promoter 197238 197268 . - . ID=CGI_10010434; scaffold1203 TRF Tandem_Repeat 197238 197268 53 + . . scaffold1203 flankbed promoter 197168 197208 . + . ID=CGI_10010435; scaffold1203 TRF Tandem_Repeat 197168 197208 82 + . . scaffold1203 flankbed promoter 197238 197268 . + . ID=CGI_10010435; scaffold1203 TRF Tandem_Repeat 197238 197268 53 + . . scaffold1204 flankbed promoter 38673 39672 . - . ID=CGI_10009804; scaffold1204 WUBlastX LTR_Pao 38424 40016 491 + . . scaffold1204 flankbed promoter 38676 39672 . - . ID=CGI_10009804; scaffold1204 WUBlastX LTR_Pao 38676 40019 1240 + . . scaffold1204 flankbed promoter 68390 68470 . - . ID=CGI_10009807; scaffold1204 TRF Tandem_Repeat 68390 68470 99 + . . scaffold1204 flankbed promoter 131990 132105 . - . ID=CGI_10009810; scaffold1204 TRF Tandem_Repeat 131990 133630 2266 + . . scaffold1204 flankbed promoter 243392 243521 . - . ID=CGI_10009816; scaffold1204 TRF Tandem_Repeat 243392 243521 81 + . . scaffold1205 flankbed promoter 94594 94693 . + . ID=CGI_10004903; scaffold1205 TRF Tandem_Repeat 94594 94693 164 + . . scaffold1209 flankbed promoter 36597 36995 . - . ID=CGI_10007964; scaffold1209 WUBlastX LINE_L1-Tx1 36597 36995 109 - . . scaffold1209 flankbed promoter 144498 144890 . - . ID=CGI_10007968; scaffold1209 WUBlastX DNA_Maverick 144498 146246 1152 + . . scaffold121 flankbed promoter 46275 46322 . + . ID=CGI_10025633; scaffold121 TRF Tandem_Repeat 46275 46322 96 + . . scaffold121 flankbed promoter 107001 107036 . - . ID=CGI_10025636; scaffold121 TRF Tandem_Repeat 107001 107036 72 + . . scaffold121 flankbed promoter 405868 405893 . + . ID=CGI_10025649; scaffold121 TRF Tandem_Repeat 405868 405893 52 + . . scaffold121 flankbed promoter 601199 601241 . - . ID=CGI_10025660; scaffold121 TRF Tandem_Repeat 601199 601241 77 + . . scaffold121 flankbed promoter 688126 688165 . - . ID=CGI_10025668; scaffold121 TRF Tandem_Repeat 688126 688165 80 + . . scaffold121 flankbed promoter 700924 700992 . - . ID=CGI_10025670; scaffold121 TRF Tandem_Repeat 700924 700992 138 + . . scaffold121 flankbed promoter 758813 758845 . + . ID=CGI_10025674; scaffold121 TRF Tandem_Repeat 758813 758845 66 + . . scaffold121 flankbed promoter 807589 807760 . - . ID=CGI_10025677; scaffold121 TRF Tandem_Repeat 807589 808003 314 + . . scaffold121 flankbed promoter 812447 812457 . + . ID=CGI_10025678; scaffold121 WUBlastX LINE_RTE-BovB 811033 812457 383 + . . scaffold121 flankbed promoter 812736 812906 . + . ID=CGI_10025678; scaffold121 WUBlastX LINE_RTE-BovB 812736 812906 52 + . . scaffold121 flankbed promoter 812810 812983 . + . ID=CGI_10025678; scaffold121 WUBlastX LINE_RTE-BovB 812810 812983 23 + . . scaffold121 flankbed promoter 812447 812727 . + . ID=CGI_10025678; scaffold121 WUBlastX LINE_RTE-X 811741 812727 26 + . . scaffold121 flankbed promoter 812736 812948 . + . ID=CGI_10025678; scaffold121 WUBlastX LINE_RTE-BovB 812736 812948 30 + . . scaffold121 flankbed promoter 873699 873836 . + . ID=CGI_10025682; scaffold121 WUBlastX LTR_Copia 873699 874085 26 + . . scaffold121 flankbed promoter 938437 938471 . + . ID=CGI_10025687; scaffold121 TRF Tandem_Repeat 938437 938471 70 + . . scaffold121 flankbed promoter 1020972 1021021 . + . ID=CGI_10025694; scaffold121 TRF Tandem_Repeat 1020972 1021021 50 + . . scaffold1210 flankbed promoter 220241 221240 . - . ID=CGI_10014605; scaffold1210 WUBlastX LINE_RTE-X 219902 222376 438 - . . scaffold1210 flankbed promoter 220601 221240 . - . ID=CGI_10014605; scaffold1210 WUBlastX LINE_RTE-X 220601 222988 813 - . . scaffold1210 flankbed promoter 222530 223129 . + . ID=CGI_10014606; scaffold1210 WUBlastX LINE_CR1 222530 223129 36 - . . scaffold1210 flankbed promoter 223121 223161 . + . ID=CGI_10014606; scaffold1210 WUBlastX LINE_CR1 223121 223240 27 - . . scaffold1210 flankbed promoter 222162 222376 . + . ID=CGI_10014606; scaffold1210 WUBlastX LINE_RTE-X 219902 222376 438 - . . scaffold1210 flankbed promoter 222162 222988 . + . ID=CGI_10014606; scaffold1210 WUBlastX LINE_RTE-X 220601 222988 813 - . . scaffold1210 flankbed promoter 243373 243753 . - . ID=CGI_10014607; scaffold1210 WUBlastX DNA_Academ 243193 243753 207 - . . scaffold1210 flankbed promoter 315374 315408 . + . ID=CGI_10014611; scaffold1210 TRF Tandem_Repeat 315374 315408 70 + . . scaffold1213 flankbed promoter 104628 104665 . + . ID=CGI_10027429; scaffold1213 TRF Tandem_Repeat 104628 104665 53 + . . scaffold1213 flankbed promoter 104411 104518 . + . ID=CGI_10027429; scaffold1213 WUBlastX LINE_L1-Tx1 104021 104518 109 + . . scaffold1213 flankbed promoter 104411 104584 . + . ID=CGI_10027429; scaffold1213 WUBlastX LINE_L1-Tx1 104108 104584 141 + . . scaffold1213 flankbed promoter 132777 132821 . + . ID=CGI_10027435; scaffold1213 TRF Tandem_Repeat 132777 132821 90 + . . scaffold1213 flankbed promoter 250226 250269 . - . ID=CGI_10027442; scaffold1213 WUBlastX DNA_TcMar-Tc1 250226 250603 127 - . . scaffold1213 flankbed promoter 250202 250269 . - . ID=CGI_10027442; scaffold1213 WUBlastX DNA_TcMar-Tc1 250202 250678 117 - . . scaffold1213 flankbed promoter 263128 263196 . + . ID=CGI_10027443; scaffold1213 TRF Tandem_Repeat 263128 263196 104 + . . scaffold1213 flankbed promoter 322717 322741 . - . ID=CGI_10027448; scaffold1213 TRF Tandem_Repeat 322717 322741 50 + . . scaffold1213 flankbed promoter 322743 322786 . - . ID=CGI_10027448; scaffold1213 TRF Tandem_Repeat 322743 322786 88 + . . scaffold1213 flankbed promoter 439219 439219 . - . ID=CGI_10027451; scaffold1213 WUBlastX DNA_TcMar-Marin 439219 440163 66 + . . scaffold1213 flankbed promoter 439195 439219 . - . ID=CGI_10027451; scaffold1213 WUBlastX DNA_TcMar-Marin 439195 439911 77 + . . scaffold1213 flankbed promoter 439207 439219 . - . ID=CGI_10027451; scaffold1213 WUBlastX DNA_TcMar-Marin 439207 439725 107 + . . scaffold1213 flankbed promoter 642839 642890 . - . ID=CGI_10027457; scaffold1213 TRF Tandem_Repeat 642839 642890 104 + . . scaffold1213 flankbed promoter 725935 725974 . - . ID=CGI_10027464; scaffold1213 TRF Tandem_Repeat 725935 725974 80 + . . scaffold1213 flankbed promoter 943755 943786 . - . ID=CGI_10027476; scaffold1213 TRF Tandem_Repeat 943755 943786 64 + . . scaffold1213 flankbed promoter 1090932 1090969 . + . ID=CGI_10027484; scaffold1213 TRF Tandem_Repeat 1090932 1090969 76 + . . scaffold1214 flankbed promoter 34613 34668 . - . ID=CGI_10015472; scaffold1214 TRF Tandem_Repeat 34613 34668 78 + . . scaffold1214 flankbed promoter 134421 135365 . - . ID=CGI_10015478; scaffold1214 WUBlastX DNA_TcMar-m44 134421 135365 588 - . . scaffold1219 flankbed promoter 17921 17988 . + . ID=CGI_10024241; scaffold1219 TRF Tandem_Repeat 17921 17988 57 + . . scaffold1219 flankbed promoter 17940 18014 . + . ID=CGI_10024241; scaffold1219 TRF Tandem_Repeat 17940 18014 55 + . . scaffold1219 flankbed promoter 110608 110642 . + . ID=CGI_10024247; scaffold1219 TRF Tandem_Repeat 110608 110642 70 + . . scaffold1219 flankbed promoter 327910 328020 . + . ID=CGI_10024263; scaffold1219 TRF Tandem_Repeat 327910 328020 123 + . . scaffold1219 flankbed promoter 397502 397534 . - . ID=CGI_10024269; scaffold1219 TRF Tandem_Repeat 397502 397534 50 + . . scaffold1219 flankbed promoter 538347 539102 . - . ID=CGI_10024282; scaffold1219 TRF Tandem_Repeat 538347 539787 1888 + . . scaffold1219 flankbed promoter 619007 619798 . - . ID=CGI_10024286; scaffold1219 WUBlastX LTR_DIRS 619007 619798 158 - . . scaffold1219 flankbed promoter 619085 619966 . - . ID=CGI_10024286; scaffold1219 WUBlastX LTR_DIRS 619085 619966 148 - . . scaffold1219 flankbed promoter 619037 619684 . - . ID=CGI_10024286; scaffold1219 WUBlastX LTR_DIRS 619037 619684 179 - . . scaffold1219 flankbed promoter 708086 708143 . + . ID=CGI_10024291; scaffold1219 TRF Tandem_Repeat 708086 708143 116 + . . scaffold1219 flankbed promoter 838004 838029 . - . ID=CGI_10024299; scaffold1219 TRF Tandem_Repeat 838004 838029 52 + . . scaffold1219 flankbed promoter 838001 838040 . - . ID=CGI_10024299; scaffold1219 TRF Tandem_Repeat 838001 838040 53 + . . scaffold122 flankbed promoter 2251 2322 . + . ID=CGI_10011862; scaffold122 TRF Tandem_Repeat 2251 2322 90 + . . scaffold122 flankbed promoter 206736 206888 . - . ID=CGI_10011875; scaffold122 WUBlastX LTR_Gypsy 206736 206909 90 + . . scaffold122 flankbed promoter 206742 206888 . - . ID=CGI_10011875; scaffold122 WUBlastX LTR_Gypsy 206742 206972 89 + . . scaffold122 flankbed promoter 206736 206909 . + . ID=CGI_10011876; scaffold122 WUBlastX LTR_Gypsy 206736 206909 90 + . . scaffold122 flankbed promoter 206742 206972 . + . ID=CGI_10011876; scaffold122 WUBlastX LTR_Gypsy 206742 206972 89 + . . scaffold122 flankbed promoter 255628 255651 . - . ID=CGI_10011880; scaffold122 WUBlastX DNA_Kolobok 255466 255651 114 - . . scaffold122 flankbed promoter 255976 256515 . - . ID=CGI_10011880; scaffold122 WUBlastX DNA_Kolobok 255976 256515 123 - . . scaffold1220 flankbed promoter 17455 17506 . - . ID=CGI_10006797; scaffold1220 TRF Tandem_Repeat 17455 17506 97 + . . scaffold1220 flankbed promoter 17701 17733 . - . ID=CGI_10006797; scaffold1220 TRF Tandem_Repeat 17701 17733 66 + . . scaffold1220 flankbed promoter 20411 20448 . - . ID=CGI_10006798; scaffold1220 TRF Tandem_Repeat 20411 20448 76 + . . scaffold1220 flankbed promoter 17701 17733 . + . ID=CGI_10006799; scaffold1220 TRF Tandem_Repeat 17701 17733 66 + . . scaffold1220 flankbed promoter 157914 157954 . - . ID=CGI_10006808; scaffold1220 TRF Tandem_Repeat 157914 157954 82 + . . scaffold1220 flankbed promoter 158239 158314 . - . ID=CGI_10006808; scaffold1220 TRF Tandem_Repeat 158239 158314 152 + . . scaffold1221 flankbed promoter 8223 8317 . - . ID=CGI_10019721; scaffold1221 WUBlastX LTR_Gypsy 7928 8317 28 - . . scaffold1221 flankbed promoter 8223 8317 . - . ID=CGI_10019721; scaffold1221 WUBlastX LTR_Gypsy 8048 8317 42 - . . scaffold1221 flankbed promoter 36064 36110 . - . ID=CGI_10019725; scaffold1221 TRF Tandem_Repeat 36064 36110 51 + . . scaffold1221 flankbed promoter 35947 35991 . - . ID=CGI_10019725; scaffold1221 WUBlastX DNA_Kolobok 35746 35991 116 - . . scaffold1221 flankbed promoter 38248 38561 . - . ID=CGI_10019726; scaffold1221 WUBlastX LINE_RTE-X 38248 39465 201 + . . scaffold1221 flankbed promoter 38248 38561 . - . ID=CGI_10019726; scaffold1221 WUBlastX LINE_RTE-X 38248 39003 230 + . . scaffold1221 flankbed promoter 37957 38121 . - . ID=CGI_10019726; scaffold1221 WUBlastX LINE_CR1 37957 38121 25 + . . scaffold1221 flankbed promoter 75820 75876 . - . ID=CGI_10019729; scaffold1221 TRF Tandem_Repeat 75820 75876 114 + . . scaffold1221 flankbed promoter 161808 161868 . - . ID=CGI_10019735; scaffold1221 TRF Tandem_Repeat 161808 161868 122 + . . scaffold1221 flankbed promoter 257203 257265 . - . ID=CGI_10019738; scaffold1221 TRF Tandem_Repeat 257203 257265 126 + . . scaffold1222 flankbed promoter 48623 48919 . + . ID=CGI_10016235; scaffold1222 TRF Tandem_Repeat 48623 48919 414 + . . scaffold1222 flankbed promoter 181349 181404 . - . ID=CGI_10016239; scaffold1222 TRF Tandem_Repeat 181349 181404 112 + . . scaffold1222 flankbed promoter 248954 249099 . - . ID=CGI_10016242; scaffold1222 TRF Tandem_Repeat 248954 249099 111 + . . scaffold1222 flankbed promoter 248954 249099 . - . ID=CGI_10016242; scaffold1222 TRF Tandem_Repeat 248954 249099 105 + . . scaffold1226 flankbed promoter 14018 14087 . + . ID=CGI_10002681; scaffold1226 TRF Tandem_Repeat 14018 14087 97 + . . scaffold1226 flankbed promoter 14030 14087 . + . ID=CGI_10002681; scaffold1226 TRF Tandem_Repeat 14030 14087 64 + . . scaffold1226 flankbed promoter 14018 14076 . + . ID=CGI_10002681; scaffold1226 TRF Tandem_Repeat 14018 14076 77 + . . scaffold1226 flankbed promoter 37154 37384 . - . ID=CGI_10002682; scaffold1226 WUBlastX DNA_hAT-Tip100 37139 37384 45 - . . scaffold1228 flankbed promoter 188573 188606 . - . ID=CGI_10016986; scaffold1228 TRF Tandem_Repeat 188573 188606 59 + . . scaffold1228 flankbed promoter 228055 228236 . + . ID=CGI_10016988; scaffold1228 TRF Tandem_Repeat 228055 228236 230 + . . scaffold1228 flankbed promoter 270030 270062 . - . ID=CGI_10016990; scaffold1228 TRF Tandem_Repeat 270030 270062 66 + . . scaffold123 flankbed promoter 56881 57078 . - . ID=CGI_10011071; scaffold123 WUBlastX DNA_TcMar-Tc1 56881 57078 21 + . . scaffold123 flankbed promoter 56911 57087 . - . ID=CGI_10011071; scaffold123 WUBlastX DNA_TcMar-Tc1 56911 57087 61 + . . scaffold123 flankbed promoter 57374 57403 . - . ID=CGI_10011071; scaffold123 WUBlastX DNA_TcMar-Tc1 57374 57853 178 + . . scaffold123 flankbed promoter 57027 57403 . - . ID=CGI_10011071; scaffold123 WUBlastX DNA_TcMar-Tc1 57027 57509 111 + . . scaffold123 flankbed promoter 108503 108553 . - . ID=CGI_10011072; scaffold123 TRF Tandem_Repeat 108503 108553 102 + . . scaffold123 flankbed promoter 108651 108727 . - . ID=CGI_10011072; scaffold123 TRF Tandem_Repeat 108651 108727 154 + . . scaffold123 flankbed promoter 156493 156541 . + . ID=CGI_10011075; scaffold123 TRF Tandem_Repeat 156493 156541 91 + . . scaffold123 flankbed promoter 263841 263907 . + . ID=CGI_10011078; scaffold123 TRF Tandem_Repeat 263841 263907 62 + . . scaffold1230 flankbed promoter 94045 94263 . - . ID=CGI_10004423; scaffold1230 WUBlastX DNA_TcMar-Tc1 94045 94263 41 + . . scaffold1230 flankbed promoter 94197 94370 . - . ID=CGI_10004423; scaffold1230 WUBlastX DNA_TcMar-Tc1 94197 94370 46 + . . scaffold1230 flankbed promoter 93982 94218 . - . ID=CGI_10004423; scaffold1230 WUBlastX DNA_TcMar-Tc1 93982 94218 34 + . . scaffold1230 flankbed promoter 94367 94495 . - . ID=CGI_10004423; scaffold1230 WUBlastX DNA_TcMar-Tc1 94367 94495 31 + . . scaffold1230 flankbed promoter 93952 94137 . - . ID=CGI_10004423; scaffold1230 WUBlastX DNA_TcMar-Tc1 93952 94137 33 + . . scaffold1232 flankbed promoter 114418 114473 . - . ID=CGI_10014996; scaffold1232 TRF Tandem_Repeat 114418 114473 112 + . . scaffold1232 flankbed promoter 408794 408839 . + . ID=CGI_10015009; scaffold1232 TRF Tandem_Repeat 408794 408839 57 + . . scaffold1232 flankbed promoter 408797 408838 . + . ID=CGI_10015009; scaffold1232 TRF Tandem_Repeat 408797 408838 50 + . . scaffold1235 flankbed promoter 24589 24705 . + . ID=CGI_10011829; scaffold1235 WUBlastX LTR_Gypsy 24589 25332 23 + . . scaffold1235 flankbed promoter 234669 234701 . - . ID=CGI_10011847; scaffold1235 TRF Tandem_Repeat 234669 234701 57 + . . scaffold1237 flankbed promoter 1738 1847 . - . ID=CGI_10012790; scaffold1237 TRF Tandem_Repeat 1738 1847 65 + . . scaffold1237 flankbed promoter 21960 22013 . + . ID=CGI_10012792; scaffold1237 TRF Tandem_Repeat 21960 22013 108 + . . scaffold1241 flankbed promoter 61181 61420 . + . ID=CGI_10016419; scaffold1241 WUBlastX LINE_L2 61181 61420 54 - . . scaffold1241 flankbed promoter 68752 69244 . - . ID=CGI_10016420; scaffold1241 TRF Tandem_Repeat 68752 69244 799 + . . scaffold1241 flankbed promoter 83553 83592 . - . ID=CGI_10016421; scaffold1241 TRF Tandem_Repeat 83553 83600 96 + . . scaffold1241 flankbed promoter 83553 83600 . + . ID=CGI_10016423; scaffold1241 TRF Tandem_Repeat 83553 83600 96 + . . scaffold1241 flankbed promoter 126939 127672 . + . ID=CGI_10016425; scaffold1241 WUBlastX DNA_hAT-hATw 126845 127672 76 + . . scaffold1241 flankbed promoter 127085 127684 . + . ID=CGI_10016425; scaffold1241 WUBlastX DNA_hAT-hATw 127085 127684 137 + . . scaffold1241 flankbed promoter 147782 147822 . + . ID=CGI_10016426; scaffold1241 WUBlastX LTR_Ngaro 146845 147822 508 + . . scaffold1241 flankbed promoter 158448 159177 . - . ID=CGI_10016427; scaffold1241 WUBlastX LTR_Gypsy 158448 159257 85 - . . scaffold1241 flankbed promoter 158403 159107 . - . ID=CGI_10016427; scaffold1241 WUBlastX LTR_Gypsy-Cigr 158403 159107 189 - . . scaffold1241 flankbed promoter 158256 158948 . - . ID=CGI_10016427; scaffold1241 WUBlastX LTR_Gypsy 158256 158948 29 - . . scaffold1241 flankbed promoter 414093 414107 . + . ID=CGI_10016439; scaffold1241 WUBlastX LINE_RTE-X 413547 414107 33 - . . scaffold1241 flankbed promoter 414121 414378 . + . ID=CGI_10016439; scaffold1241 WUBlastX LINE_RTE-X 414121 414378 25 - . . scaffold1241 flankbed promoter 414093 414161 . + . ID=CGI_10016439; scaffold1241 WUBlastX LINE_RTE-X 413721 414161 33 - . . scaffold1242 flankbed promoter 2925 2954 . + . ID=CGI_10000428; scaffold1242 WUBlastX LINE_RTE-BovB 2505 2954 115 - . . scaffold1242 flankbed promoter 2950 3285 . + . ID=CGI_10000428; scaffold1242 WUBlastX LINE_RTE-BovB 2950 3285 35 - . . scaffold1244 flankbed promoter 53600 53645 . + . ID=CGI_10020817; scaffold1244 TRF Tandem_Repeat 53600 53645 92 + . . scaffold1244 flankbed promoter 122136 122219 . - . ID=CGI_10020822; scaffold1244 WUBlastX LTR_Gypsy 122136 123572 500 - . . scaffold1244 flankbed promoter 121992 122219 . - . ID=CGI_10020822; scaffold1244 WUBlastX LTR_Gypsy 121992 122834 46 - . . scaffold1244 flankbed promoter 163946 164261 . - . ID=CGI_10020827; scaffold1244 WUBlastX LTR_Pao 163946 164467 23 - . . scaffold1244 flankbed promoter 163622 164086 . - . ID=CGI_10020827; scaffold1244 WUBlastX LTR_Pao 163622 164086 34 - . . scaffold1244 flankbed promoter 163676 164044 . - . ID=CGI_10020827; scaffold1244 WUBlastX LTR_Pao 163676 164044 92 - . . scaffold1244 flankbed promoter 325927 326008 . + . ID=CGI_10020833; scaffold1244 TRF Tandem_Repeat 325927 326008 74 + . . scaffold1244 flankbed promoter 326076 326135 . + . ID=CGI_10020833; scaffold1244 TRF Tandem_Repeat 326076 326135 61 + . . scaffold1244 flankbed promoter 378836 378933 . + . ID=CGI_10020834; scaffold1244 TRF Tandem_Repeat 378836 378933 96 + . . scaffold1244 flankbed promoter 379145 379268 . + . ID=CGI_10020834; scaffold1244 TRF Tandem_Repeat 379145 379268 64 + . . scaffold1244 flankbed promoter 379137 379259 . + . ID=CGI_10020834; scaffold1244 TRF Tandem_Repeat 379137 379259 52 + . . scaffold1244 flankbed promoter 379145 379365 . + . ID=CGI_10020834; scaffold1244 TRF Tandem_Repeat 379145 379365 148 + . . scaffold1244 flankbed promoter 490607 490648 . - . ID=CGI_10020835; scaffold1244 TRF Tandem_Repeat 490607 490648 59 + . . scaffold1245 flankbed promoter 45838 45913 . + . ID=CGI_10009221; scaffold1245 TRF Tandem_Repeat 45838 45913 152 + . . scaffold1247 flankbed promoter 62610 62989 . - . ID=CGI_10008943; scaffold1247 TRF Tandem_Repeat 62610 63615 1543 + . . scaffold1249 flankbed promoter 123777 123814 . + . ID=CGI_10019051; scaffold1249 TRF Tandem_Repeat 123777 123814 76 + . . scaffold1249 flankbed promoter 208915 208981 . + . ID=CGI_10019057; scaffold1249 TRF Tandem_Repeat 208915 208981 98 + . . scaffold1249 flankbed promoter 323465 323632 . + . ID=CGI_10019062; scaffold1249 TRF Tandem_Repeat 323465 323632 201 + . . scaffold1249 flankbed promoter 323465 323642 . + . ID=CGI_10019062; scaffold1249 TRF Tandem_Repeat 323465 323642 248 + . . scaffold1250 flankbed promoter 14484 14548 . + . ID=CGI_10004324; scaffold1250 WUBlastX DNA_Harbinger 14477 14548 27 - . . scaffold1252 flankbed promoter 98906 98952 . + . ID=CGI_10013116; scaffold1252 TRF Tandem_Repeat 98906 98952 67 + . . scaffold1252 flankbed promoter 272262 272304 . + . ID=CGI_10013122; scaffold1252 TRF Tandem_Repeat 272262 272304 86 + . . scaffold1255 flankbed promoter 354160 354274 . - . ID=CGI_10018079; scaffold1255 WUBlastX DNA_Maverick 354160 354759 392 - . . scaffold1255 flankbed promoter 371866 371903 . + . ID=CGI_10018083; scaffold1255 TRF Tandem_Repeat 371866 371903 76 + . . scaffold1255 flankbed promoter 371982 372006 . + . ID=CGI_10018083; scaffold1255 TRF Tandem_Repeat 371982 372006 50 + . . scaffold1256 flankbed promoter 42383 42427 . - . ID=CGI_10005422; scaffold1256 TRF Tandem_Repeat 42383 42427 90 + . . scaffold1256 flankbed promoter 42570 42601 . - . ID=CGI_10005422; scaffold1256 TRF Tandem_Repeat 42570 42601 64 + . . scaffold1256 flankbed promoter 107757 107786 . + . ID=CGI_10005431; scaffold1256 TRF Tandem_Repeat 107757 107786 60 + . . scaffold1258 flankbed promoter 218116 218161 . + . ID=CGI_10023490; scaffold1258 TRF Tandem_Repeat 217603 218161 679 + . . scaffold1258 flankbed promoter 218116 218161 . + . ID=CGI_10023490; scaffold1258 TRF Tandem_Repeat 217596 218161 691 + . . scaffold1258 flankbed promoter 507841 507867 . - . ID=CGI_10023501; scaffold1258 TRF Tandem_Repeat 507841 507867 54 + . . scaffold1258 flankbed promoter 584497 584538 . + . ID=CGI_10023506; scaffold1258 TRF Tandem_Repeat 584497 584538 84 + . . scaffold1258 flankbed promoter 602963 603006 . - . ID=CGI_10023508; scaffold1258 TRF Tandem_Repeat 602963 603006 54 + . . scaffold126 flankbed promoter 5072 5216 . + . ID=CGI_10019178; scaffold126 TRF Tandem_Repeat 5072 5216 272 + . . scaffold126 flankbed promoter 71990 72070 . + . ID=CGI_10019179; scaffold126 WUBlastX DNA_Harbinger 71990 72202 69 + . . scaffold126 flankbed promoter 72041 72070 . + . ID=CGI_10019179; scaffold126 WUBlastX DNA_Harbinger 72041 72184 79 + . . scaffold126 flankbed promoter 250173 250263 . + . ID=CGI_10019187; scaffold126 TRF Tandem_Repeat 250173 250263 73 + . . scaffold126 flankbed promoter 250249 250309 . + . ID=CGI_10019187; scaffold126 TRF Tandem_Repeat 250249 250309 50 + . . scaffold126 flankbed promoter 250173 250263 . + . ID=CGI_10019188; scaffold126 TRF Tandem_Repeat 250173 250263 73 + . . scaffold126 flankbed promoter 250249 250309 . + . ID=CGI_10019188; scaffold126 TRF Tandem_Repeat 250249 250309 50 + . . scaffold126 flankbed promoter 387177 387539 . + . ID=CGI_10019196; scaffold126 WUBlastX DNA_IS4EU 387177 387539 50 + . . scaffold126 flankbed promoter 400847 401418 . + . ID=CGI_10019197; scaffold126 WUBlastX DNA_Harbinger 400822 401418 90 - . . scaffold1260 flankbed promoter 46189 46614 . + . ID=CGI_10005942; scaffold1260 TRF Tandem_Repeat 45958 46614 959 + . . scaffold1260 flankbed promoter 96281 96314 . + . ID=CGI_10005943; scaffold1260 TRF Tandem_Repeat 96281 96314 68 + . . scaffold1262 flankbed promoter 343685 344006 . - . ID=CGI_10018944; scaffold1262 WUBlastX LINE_RTE-X 343685 344854 257 - . . scaffold1262 flankbed promoter 343862 344006 . - . ID=CGI_10018944; scaffold1262 WUBlastX LINE_RTE-X 343862 344854 302 - . . scaffold1266 flankbed promoter 34004 34041 . - . ID=CGI_10004344; scaffold1266 TRF Tandem_Repeat 34004 34041 76 + . . scaffold1267 flankbed promoter 108196 108250 . + . ID=CGI_10025141; scaffold1267 TRF Tandem_Repeat 108196 108250 74 + . . scaffold1267 flankbed promoter 131909 131970 . - . ID=CGI_10025143; scaffold1267 TRF Tandem_Repeat 131909 131970 72 + . . scaffold1267 flankbed promoter 132010 132050 . - . ID=CGI_10025143; scaffold1267 TRF Tandem_Repeat 132010 132050 82 + . . scaffold1267 flankbed promoter 335569 335913 . + . ID=CGI_10025149; scaffold1267 WUBlastX LINE_L2 335569 335913 33 + . . scaffold1267 flankbed promoter 345622 346620 . - . ID=CGI_10025150; scaffold1267 WUBlastX LTR_Pao 345622 346884 99 + . . scaffold1267 flankbed promoter 345868 346620 . - . ID=CGI_10025150; scaffold1267 WUBlastX LTR_Pao 345868 346899 223 + . . scaffold1267 flankbed promoter 346342 346620 . - . ID=CGI_10025150; scaffold1267 WUBlastX LTR_Pao 346342 346899 344 + . . scaffold1267 flankbed promoter 522402 522493 . + . ID=CGI_10025155; scaffold1267 TRF Tandem_Repeat 522402 522493 123 + . . scaffold1267 flankbed promoter 546589 546649 . - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 546589 546649 122 + . . scaffold1267 flankbed promoter 546647 546688 . - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 546647 546688 84 + . . scaffold1267 flankbed promoter 546589 546649 . + . ID=CGI_10025157; scaffold1267 TRF Tandem_Repeat 546589 546649 122 + . . scaffold1267 flankbed promoter 546647 546688 . + . ID=CGI_10025157; scaffold1267 TRF Tandem_Repeat 546647 546688 84 + . . scaffold1267 flankbed promoter 606034 606076 . + . ID=CGI_10025162; scaffold1267 TRF Tandem_Repeat 606034 606076 86 + . . scaffold1267 flankbed promoter 629672 629750 . + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 629672 629750 83 + . . scaffold1267 flankbed promoter 761516 761622 . - . ID=CGI_10025169; scaffold1267 WUBlastX LINE_RTE-X 761516 762196 250 + . . scaffold1267 flankbed promoter 761462 761622 . - . ID=CGI_10025169; scaffold1267 WUBlastX LINE_RTE-X 761462 762280 210 + . . scaffold1267 flankbed promoter 764637 764789 . + . ID=CGI_10025170; scaffold1267 WUBlastX LINE_RTE-X 764637 764789 28 + . . scaffold1267 flankbed promoter 764643 764729 . + . ID=CGI_10025170; scaffold1267 WUBlastX LINE_RTE-X 764643 764729 32 + . . scaffold1267 flankbed promoter 772380 772430 . + . ID=CGI_10025171; scaffold1267 TRF Tandem_Repeat 771795 772430 377 + . . scaffold1267 flankbed promoter 772380 772430 . + . ID=CGI_10025171; scaffold1267 TRF Tandem_Repeat 771778 772430 672 + . . scaffold1267 flankbed promoter 772380 772430 . + . ID=CGI_10025171; scaffold1267 TRF Tandem_Repeat 771778 772430 677 + . . scaffold1267 flankbed promoter 772380 772414 . + . ID=CGI_10025171; scaffold1267 TRF Tandem_Repeat 771778 772414 154 + . . scaffold1267 flankbed promoter 840690 840727 . + . ID=CGI_10025173; scaffold1267 TRF Tandem_Repeat 840690 840727 60 + . . scaffold1267 flankbed promoter 877430 877972 . - . ID=CGI_10025174; scaffold1267 TRF Tandem_Repeat 877430 877972 780 + . . scaffold1267 flankbed promoter 878032 878176 . - . ID=CGI_10025174; scaffold1267 TRF Tandem_Repeat 878032 878306 418 + . . scaffold1267 flankbed promoter 943181 943258 . - . ID=CGI_10025177; scaffold1267 TRF Tandem_Repeat 943181 943258 77 + . . scaffold1267 flankbed promoter 1029916 1029977 . + . ID=CGI_10025181; scaffold1267 TRF Tandem_Repeat 1029916 1029977 90 + . . scaffold128 flankbed promoter 64282 64375 . - . ID=CGI_10021504; scaffold128 TRF Tandem_Repeat 64282 64375 161 + . . scaffold128 flankbed promoter 274169 274214 . + . ID=CGI_10021515; scaffold128 WUBlastX LTR_Gypsy 273954 274214 30 + . . scaffold128 flankbed promoter 274169 274352 . + . ID=CGI_10021515; scaffold128 WUBlastX LTR_Gypsy 273996 274352 79 + . . scaffold128 flankbed promoter 274884 275168 . + . ID=CGI_10021515; scaffold128 WUBlastX LTR_Gypsy 274884 275198 95 + . . scaffold128 flankbed promoter 274169 275150 . + . ID=CGI_10021515; scaffold128 WUBlastX LTR_Gypsy 274080 275150 258 + . . scaffold128 flankbed promoter 283939 284277 . - . ID=CGI_10021516; scaffold128 WUBlastX LTR_Gypsy 283939 284277 109 + . . scaffold128 flankbed promoter 283939 284211 . - . ID=CGI_10021516; scaffold128 WUBlastX LTR_Gypsy-Cigr 283939 284211 173 + . . scaffold128 flankbed promoter 283813 284208 . - . ID=CGI_10021516; scaffold128 WUBlastX LTR_Gypsy 283813 284208 33 + . . scaffold128 flankbed promoter 283876 284208 . - . ID=CGI_10021516; scaffold128 WUBlastX LTR_Gypsy-Cigr 283876 284208 121 + . . scaffold128 flankbed promoter 314970 315013 . + . ID=CGI_10021517; scaffold128 TRF Tandem_Repeat 314970 315013 70 + . . scaffold128 flankbed promoter 314961 315013 . + . ID=CGI_10021517; scaffold128 TRF Tandem_Repeat 314961 315013 79 + . . scaffold128 flankbed promoter 384145 384357 . - . ID=CGI_10021518; scaffold128 WUBlastX DNA_Harbinger 384145 384357 91 + . . scaffold128 flankbed promoter 529073 529110 . + . ID=CGI_10021530; scaffold128 TRF Tandem_Repeat 529073 529110 60 + . . scaffold128 flankbed promoter 569065 569117 . + . ID=CGI_10021532; scaffold128 TRF Tandem_Repeat 569065 569117 106 + . . scaffold1281 flankbed promoter 4032 4135 . - . ID=CGI_10001419; scaffold1281 WUBlastX LINE_RTE-BovB 3938 4135 43 - . . scaffold1283 flankbed promoter 48176 48265 . - . ID=CGI_10011784; scaffold1283 TRF Tandem_Repeat 48176 48265 83 + . . scaffold1283 flankbed promoter 48285 48448 . - . ID=CGI_10011784; scaffold1283 TRF Tandem_Repeat 48285 48448 192 + . . scaffold1283 flankbed promoter 78745 78775 . + . ID=CGI_10011788; scaffold1283 TRF Tandem_Repeat 78745 78775 62 + . . scaffold1283 flankbed promoter 190725 190745 . - . ID=CGI_10011792; scaffold1283 WUBlastX LINE_L1-Tx1 190725 190865 27 + . . scaffold1283 flankbed promoter 190316 190678 . - . ID=CGI_10011792; scaffold1283 WUBlastX LINE_L1 190316 190678 56 + . . scaffold1283 flankbed promoter 259399 259563 . - . ID=CGI_10011796; scaffold1283 WUBlastX LINE_L2 259399 259725 73 + . . scaffold1283 flankbed promoter 259327 259563 . - . ID=CGI_10011796; scaffold1283 WUBlastX LINE_L2 259327 259578 108 + . . scaffold1288 flankbed promoter 52511 52591 . - . ID=CGI_10010912; scaffold1288 WUBlastX LINE_RTE-BovB 52511 52591 45 + . . scaffold1288 flankbed promoter 52608 52676 . - . ID=CGI_10010912; scaffold1288 WUBlastX LINE_RTE-BovB 52608 52676 31 + . . scaffold1288 flankbed promoter 76959 77000 . + . ID=CGI_10010914; scaffold1288 TRF Tandem_Repeat 76959 77000 84 + . . scaffold1288 flankbed promoter 180975 181010 . + . ID=CGI_10010918; scaffold1288 TRF Tandem_Repeat 180975 181010 72 + . . scaffold1288 flankbed promoter 181010 181036 . + . ID=CGI_10010918; scaffold1288 TRF Tandem_Repeat 181010 181036 54 + . . scaffold1288 flankbed promoter 277952 278347 . - . ID=CGI_10010927; scaffold1288 TRF Tandem_Repeat 277952 278347 545 + . . scaffold1290 flankbed promoter 6521 6811 . - . ID=CGI_10005119; scaffold1290 WUBlastX LTR_Gypsy-Cigr 6521 9358 2037 - . . scaffold1290 flankbed promoter 6605 6811 . - . ID=CGI_10005119; scaffold1290 WUBlastX LTR_Gypsy 6605 10072 1672 - . . scaffold1290 flankbed promoter 33210 33252 . + . ID=CGI_10005122; scaffold1290 TRF Tandem_Repeat 33210 33252 86 + . . scaffold1293 flankbed promoter 113925 114273 . - . ID=CGI_10015858; scaffold1293 WUBlastX LTR_Gypsy 113925 114680 151 - . . scaffold1293 flankbed promoter 113442 113759 . - . ID=CGI_10015858; scaffold1293 WUBlastX LTR_Gypsy-Cigr 113442 113759 108 - . . scaffold1293 flankbed promoter 113379 113732 . - . ID=CGI_10015858; scaffold1293 WUBlastX LTR_Gypsy 113379 113732 83 - . . scaffold1293 flankbed promoter 113310 113732 . - . ID=CGI_10015858; scaffold1293 WUBlastX LTR_Gypsy 113310 113732 81 - . . scaffold1293 flankbed promoter 113592 114273 . - . ID=CGI_10015858; scaffold1293 WUBlastX LTR_Gypsy 113592 114668 72 - . . scaffold1293 flankbed promoter 114216 114273 . - . ID=CGI_10015858; scaffold1293 WUBlastX LTR_Gypsy-Cigr 114216 114719 183 - . . scaffold13 flankbed promoter 37091 37114 . + . ID=CGI_10013196; scaffold13 TRF Tandem_Repeat 36890 37114 298 + . . scaffold13 flankbed promoter 37207 37485 . + . ID=CGI_10013196; scaffold13 TRF Tandem_Repeat 37207 37485 267 + . . scaffold13 flankbed promoter 104120 104261 . + . ID=CGI_10013201; scaffold13 TRF Tandem_Repeat 104120 104261 88 + . . scaffold13 flankbed promoter 104153 104352 . + . ID=CGI_10013201; scaffold13 TRF Tandem_Repeat 104153 104352 294 + . . scaffold13 flankbed promoter 118028 118046 . + . ID=CGI_10013203; scaffold13 TRF Tandem_Repeat 117980 118046 80 + . . scaffold13 flankbed promoter 171056 171297 . + . ID=CGI_10013207; scaffold13 TRF Tandem_Repeat 170519 171297 1104 + . . scaffold13 flankbed promoter 171969 172055 . + . ID=CGI_10013207; scaffold13 WUBlastX DNA_hAT-Blackja 171969 172121 26 + . . scaffold1301 flankbed promoter 146500 146542 . - . ID=CGI_10027706; scaffold1301 TRF Tandem_Repeat 146500 146542 86 + . . scaffold1301 flankbed promoter 320982 321027 . - . ID=CGI_10027714; scaffold1301 TRF Tandem_Repeat 320982 321060 63 + . . scaffold1301 flankbed promoter 320990 321027 . - . ID=CGI_10027714; scaffold1301 TRF Tandem_Repeat 320990 321055 53 + . . scaffold1301 flankbed promoter 547225 547260 . + . ID=CGI_10027729; scaffold1301 TRF Tandem_Repeat 547225 547260 63 + . . scaffold1301 flankbed promoter 907873 907929 . + . ID=CGI_10027748; scaffold1301 TRF Tandem_Repeat 907873 907929 114 + . . scaffold1301 flankbed promoter 1094306 1094381 . - . ID=CGI_10027758; scaffold1301 TRF Tandem_Repeat 1094306 1094381 143 + . . scaffold1301 flankbed promoter 1414273 1414324 . - . ID=CGI_10027778; scaffold1301 TRF Tandem_Repeat 1414273 1414324 104 + . . scaffold1301 flankbed promoter 1414326 1414359 . - . ID=CGI_10027778; scaffold1301 TRF Tandem_Repeat 1414326 1414359 68 + . . scaffold1301 flankbed promoter 1548524 1548729 . + . ID=CGI_10027785; scaffold1301 TRF Tandem_Repeat 1548524 1548729 331 + . . scaffold1304 flankbed promoter 80775 80813 . - . ID=CGI_10003866; scaffold1304 TRF Tandem_Repeat 80775 80813 78 + . . scaffold1307 flankbed promoter 153259 153289 . - . ID=CGI_10023746; scaffold1307 TRF Tandem_Repeat 153259 153329 133 + . . scaffold1307 flankbed promoter 140142 140181 . + . ID=CGI_10023747; scaffold1307 TRF Tandem_Repeat 140142 140704 955 + . . scaffold1307 flankbed promoter 261139 261229 . - . ID=CGI_10023750; scaffold1307 WUBlastX DNA_Harbinger 261139 261429 144 - . . scaffold1307 flankbed promoter 260992 261229 . - . ID=CGI_10023750; scaffold1307 WUBlastX DNA_Harbinger 260992 261384 62 - . . scaffold1307 flankbed promoter 332873 333007 . + . ID=CGI_10023755; scaffold1307 WUBlastX LTR_Gypsy 332873 333007 80 + . . scaffold1307 flankbed promoter 332505 332917 . + . ID=CGI_10023755; scaffold1307 WUBlastX LTR_Gypsy-Cigr 331868 332917 356 + . . scaffold1307 flankbed promoter 332505 332701 . + . ID=CGI_10023755; scaffold1307 WUBlastX LTR_Gypsy 331562 332701 1111 + . . scaffold1307 flankbed promoter 469386 470349 . - . ID=CGI_10023762; scaffold1307 TRF Tandem_Repeat 469386 470571 1807 + . . scaffold1307 flankbed promoter 586404 586430 . + . ID=CGI_10023769; scaffold1307 TRF Tandem_Repeat 586404 586430 54 + . . scaffold1307 flankbed promoter 585550 585700 . + . ID=CGI_10023769; scaffold1307 WUBlastX DNA_TcMar-Tc1 585017 585700 185 - . . scaffold1307 flankbed promoter 585974 586153 . + . ID=CGI_10023769; scaffold1307 WUBlastX DNA_TcMar-Tc1 585974 586153 73 - . . scaffold1307 flankbed promoter 585914 586153 . + . ID=CGI_10023769; scaffold1307 WUBlastX DNA_TcMar-Tc1 585914 586153 33 - . . scaffold1307 flankbed promoter 585550 585550 . + . ID=CGI_10023769; scaffold1307 WUBlastX DNA_TcMar-Tc1 585041 585550 209 - . . scaffold1307 flankbed promoter 585651 585824 . + . ID=CGI_10023769; scaffold1307 WUBlastX DNA_TcMar-Tc1 585651 585824 24 - . . scaffold1307 flankbed promoter 662428 662499 . - . ID=CGI_10023777; scaffold1307 TRF Tandem_Repeat 662428 662499 144 + . . scaffold1307 flankbed promoter 709510 709547 . - . ID=CGI_10023784; scaffold1307 TRF Tandem_Repeat 709510 709547 76 + . . scaffold1314 flankbed promoter 20933 21112 . + . ID=CGI_10009302; scaffold1314 WUBlastX LINE_L1-Tx1 20846 21112 43 + . . scaffold1315 flankbed promoter 82153 82200 . + . ID=CGI_10021594; scaffold1315 TRF Tandem_Repeat 82153 82200 80 + . . scaffold1315 flankbed promoter 268816 269391 . - . ID=CGI_10021616; scaffold1315 WUBlastX LTR_Gypsy-Cigr 268816 271404 1481 - . . scaffold1315 flankbed promoter 268651 269391 . - . ID=CGI_10021616; scaffold1315 WUBlastX LTR_Gypsy 268651 269646 201 - . . scaffold1315 flankbed promoter 330391 330461 . - . ID=CGI_10021617; scaffold1315 TRF Tandem_Repeat 330391 330461 124 + . . scaffold1315 flankbed promoter 510540 510630 . - . ID=CGI_10021622; scaffold1315 TRF Tandem_Repeat 510540 510630 128 + . . scaffold1315 flankbed promoter 521066 521269 . + . ID=CGI_10021623; scaffold1315 WUBlastX LTR_DIRS 520487 521269 238 - . . scaffold1315 flankbed promoter 521066 521437 . + . ID=CGI_10021623; scaffold1315 WUBlastX LTR_DIRS 520418 521437 153 - . . scaffold1315 flankbed promoter 704290 705240 . - . ID=CGI_10021629; scaffold1315 WUBlastX LINE_Penelope 704290 706200 839 - . . scaffold1316 flankbed promoter 68402 68490 . + . ID=CGI_10016294; scaffold1316 TRF Tandem_Repeat 68402 68490 87 + . . scaffold1316 flankbed promoter 221854 221970 . - . ID=CGI_10016303; scaffold1316 TRF Tandem_Repeat 221854 222289 413 + . . scaffold1316 flankbed promoter 221854 221970 . - . ID=CGI_10016303; scaffold1316 TRF Tandem_Repeat 221854 222289 380 + . . scaffold1316 flankbed promoter 434218 434244 . - . ID=CGI_10016315; scaffold1316 TRF Tandem_Repeat 434218 434244 54 + . . scaffold1317 flankbed promoter 18421 18741 . - . ID=CGI_10006053; scaffold1317 WUBlastX LTR_Pao 18421 18741 21 + . . scaffold1317 flankbed promoter 18616 18943 . - . ID=CGI_10006053; scaffold1317 WUBlastX LTR_Pao 18616 18945 75 + . . scaffold1317 flankbed promoter 18862 18943 . - . ID=CGI_10006053; scaffold1317 WUBlastX LTR_Pao 18862 20121 616 + . . scaffold1317 flankbed promoter 62587 62712 . + . ID=CGI_10006055; scaffold1317 WUBlastX LINE_L1-Tx1 62587 62712 58 - . . scaffold1317 flankbed promoter 62780 63010 . + . ID=CGI_10006055; scaffold1317 WUBlastX LINE_L1-Tx1 62780 63010 46 - . . scaffold1317 flankbed promoter 62864 63028 . + . ID=CGI_10006055; scaffold1317 WUBlastX LINE_L1-Tx1 62864 63028 61 - . . scaffold1317 flankbed promoter 62861 63142 . + . ID=CGI_10006055; scaffold1317 WUBlastX LINE_L1-Tx1 62861 63142 59 - . . scaffold1317 flankbed promoter 63076 63270 . + . ID=CGI_10006055; scaffold1317 WUBlastX DNA_Crypton 63076 63528 39 + . . scaffold1317 flankbed promoter 62861 62980 . + . ID=CGI_10006055; scaffold1317 WUBlastX LINE_L1 62861 62980 78 - . . scaffold1317 flankbed promoter 62763 62861 . + . ID=CGI_10006055; scaffold1317 WUBlastX LINE_L1-Tx1 62763 62861 27 - . . scaffold1318 flankbed promoter 65884 65913 . + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 65884 65913 51 + . . scaffold1318 flankbed promoter 179705 179729 . - . ID=CGI_10008649; scaffold1318 TRF Tandem_Repeat 179705 179729 50 + . . scaffold1318 flankbed promoter 179964 180034 . - . ID=CGI_10008649; scaffold1318 TRF Tandem_Repeat 179964 180034 142 + . . scaffold1318 flankbed promoter 180433 180679 . - . ID=CGI_10008649; scaffold1318 TRF Tandem_Repeat 180433 180681 282 + . . scaffold132 flankbed promoter 32826 33243 . - . ID=CGI_10004707; scaffold132 TRF Tandem_Repeat 32826 33390 519 + . . scaffold132 flankbed promoter 32826 33243 . - . ID=CGI_10004707; scaffold132 TRF Tandem_Repeat 32826 33390 1017 + . . scaffold132 flankbed promoter 106606 106657 . + . ID=CGI_10004714; scaffold132 TRF Tandem_Repeat 106606 106657 77 + . . scaffold1321 flankbed promoter 130930 130956 . - . ID=CGI_10010661; scaffold1321 TRF Tandem_Repeat 130930 130956 54 + . . scaffold1321 flankbed promoter 137202 137267 . - . ID=CGI_10010662; scaffold1321 WUBlastX LTR_DIRS 136803 137267 205 - . . scaffold1322 flankbed promoter 365977 366348 . + . ID=CGI_10019476; scaffold1322 TRF Tandem_Repeat 365977 366348 336 + . . scaffold1322 flankbed promoter 365977 366340 . + . ID=CGI_10019476; scaffold1322 TRF Tandem_Repeat 365977 366340 291 + . . scaffold1322 flankbed promoter 409377 409445 . - . ID=CGI_10019477; scaffold1322 WUBlastX LTR_Pao 408846 409445 36 - . . scaffold1322 flankbed promoter 409863 410306 . - . ID=CGI_10019477; scaffold1322 WUBlastX LTR_Ngaro 409863 410306 110 + . . scaffold1322 flankbed promoter 409377 409863 . - . ID=CGI_10019477; scaffold1322 WUBlastX LTR_Pao 409177 409863 91 - . . scaffold1323 flankbed promoter 4100 4325 . + . ID=CGI_10009080; scaffold1323 WUBlastX LTR_Gypsy 3780 4325 95 - . . scaffold1323 flankbed promoter 4100 4517 . + . ID=CGI_10009080; scaffold1323 WUBlastX LTR_DIRS 3879 4517 362 - . . scaffold1323 flankbed promoter 25120 25218 . - . ID=CGI_10009081; scaffold1323 WUBlastX DNA_Sola 24829 25218 93 - . . scaffold1323 flankbed promoter 185258 185325 . - . ID=CGI_10009087; scaffold1323 TRF Tandem_Repeat 185258 185325 118 + . . scaffold1323 flankbed promoter 213795 213836 . - . ID=CGI_10009088; scaffold1323 TRF Tandem_Repeat 213795 213836 84 + . . scaffold1323 flankbed promoter 223433 223643 . - . ID=CGI_10009089; scaffold1323 TRF Tandem_Repeat 223433 223643 327 + . . scaffold1324 flankbed promoter 3074 3355 . - . ID=CGI_10018370; scaffold1324 WUBlastX DNA_Harbinger 3074 3355 36 - . . scaffold1324 flankbed promoter 78697 78726 . + . ID=CGI_10018377; scaffold1324 TRF Tandem_Repeat 78697 78726 51 + . . scaffold1324 flankbed promoter 84761 85127 . + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 84761 85127 592 + . . scaffold1324 flankbed promoter 152153 152191 . - . ID=CGI_10018382; scaffold1324 TRF Tandem_Repeat 152153 152191 78 + . . scaffold1324 flankbed promoter 173508 173535 . + . ID=CGI_10018384; scaffold1324 TRF Tandem_Repeat 173508 173535 56 + . . scaffold1324 flankbed promoter 206017 206205 . - . ID=CGI_10018387; scaffold1324 TRF Tandem_Repeat 206017 206205 127 + . . scaffold1324 flankbed promoter 206017 206204 . - . ID=CGI_10018387; scaffold1324 TRF Tandem_Repeat 206017 206204 198 + . . scaffold1324 flankbed promoter 206203 206373 . - . ID=CGI_10018387; scaffold1324 TRF Tandem_Repeat 206203 206373 207 + . . scaffold1324 flankbed promoter 212494 212557 . + . ID=CGI_10018388; scaffold1324 TRF Tandem_Repeat 212153 212557 447 + . . scaffold1324 flankbed promoter 261034 261102 . - . ID=CGI_10018392; scaffold1324 TRF Tandem_Repeat 261034 261102 111 + . . scaffold1324 flankbed promoter 263782 264734 . + . ID=CGI_10018393; scaffold1324 WUBlastX LTR_Gypsy-Cigr 263313 264734 788 + . . scaffold1324 flankbed promoter 353089 353206 . + . ID=CGI_10018396; scaffold1324 TRF Tandem_Repeat 353017 353206 193 + . . scaffold1324 flankbed promoter 367359 367434 . - . ID=CGI_10018397; scaffold1324 TRF Tandem_Repeat 367359 367434 152 + . . scaffold1327 flankbed promoter 157862 157963 . + . ID=CGI_10014340; scaffold1327 TRF Tandem_Repeat 157862 157963 111 + . . scaffold1327 flankbed promoter 279530 279562 . - . ID=CGI_10014345; scaffold1327 TRF Tandem_Repeat 279530 279562 66 + . . scaffold1327 flankbed promoter 375740 376126 . + . ID=CGI_10014348; scaffold1327 TRF Tandem_Repeat 375740 376126 638 + . . scaffold1328 flankbed promoter 26003 26284 . - . ID=CGI_10012985; scaffold1328 WUBlastX DNA_Maverick 26003 26284 81 - . . scaffold1328 flankbed promoter 26003 26392 . - . ID=CGI_10012985; scaffold1328 WUBlastX DNA_Maverick 26003 26392 61 - . . scaffold1328 flankbed promoter 26003 26233 . - . ID=CGI_10012985; scaffold1328 WUBlastX DNA_Maverick 26003 26233 96 - . . scaffold1328 flankbed promoter 26452 26925 . - . ID=CGI_10012985; scaffold1328 WUBlastX DNA_Maverick 26452 27654 499 - . . scaffold1328 flankbed promoter 322676 323177 . + . ID=CGI_10012994; scaffold1328 TRF Tandem_Repeat 322454 323177 914 + . . scaffold1329 flankbed promoter 94847 94966 . - . ID=CGI_10015782; scaffold1329 WUBlastX LTR_Gypsy 94847 94966 40 - . . scaffold1329 flankbed promoter 94911 95406 . - . ID=CGI_10015782; scaffold1329 WUBlastX LTR_Gypsy-Cigr 94911 96068 753 - . . scaffold1329 flankbed promoter 94847 94966 . - . ID=CGI_10015783; scaffold1329 WUBlastX LTR_Gypsy 94847 94966 40 - . . scaffold1329 flankbed promoter 94911 95722 . - . ID=CGI_10015783; scaffold1329 WUBlastX LTR_Gypsy-Cigr 94911 96068 753 - . . scaffold1329 flankbed promoter 271806 271858 . + . ID=CGI_10015790; scaffold1329 TRF Tandem_Repeat 271806 271858 106 + . . scaffold1329 flankbed promoter 367451 367771 . - . ID=CGI_10015797; scaffold1329 WUBlastX DNA_Crypton 367451 367771 57 - . . scaffold1330 flankbed promoter 34958 35090 . - . ID=CGI_10009451; scaffold1330 TRF Tandem_Repeat 34958 35090 68 + . . scaffold1333 flankbed promoter 137005 137047 . + . ID=CGI_10009683; scaffold1333 TRF Tandem_Repeat 137005 137047 86 + . . scaffold1333 flankbed promoter 187689 187802 . + . ID=CGI_10009687; scaffold1333 TRF Tandem_Repeat 187689 187802 185 + . . scaffold1333 flankbed promoter 188496 188548 . + . ID=CGI_10009687; scaffold1333 TRF Tandem_Repeat 188496 188548 106 + . . scaffold1337 flankbed promoter 135831 135929 . - . ID=CGI_10012831; scaffold1337 WUBlastX LINE_RTE-X 135831 136022 51 + . . scaffold1337 flankbed promoter 160888 160979 . + . ID=CGI_10012837; scaffold1337 TRF Tandem_Repeat 160888 160979 80 + . . scaffold1337 flankbed promoter 161056 161215 . + . ID=CGI_10012837; scaffold1337 TRF Tandem_Repeat 161056 161215 187 + . . scaffold1337 flankbed promoter 161445 161538 . + . ID=CGI_10012837; scaffold1337 TRF Tandem_Repeat 161445 161538 100 + . . scaffold1338 flankbed promoter 17609 17650 . - . ID=CGI_10001341; scaffold1338 TRF Tandem_Repeat 17609 17650 84 + . . scaffold1343 flankbed promoter 29570 29600 . + . ID=CGI_10005045; scaffold1343 TRF Tandem_Repeat 29570 29600 53 + . . scaffold1343 flankbed promoter 116249 116311 . - . ID=CGI_10005049; scaffold1343 TRF Tandem_Repeat 116249 116311 126 + . . scaffold1345 flankbed promoter 251730 251769 . - . ID=CGI_10016283; scaffold1345 TRF Tandem_Repeat 251730 251769 80 + . . scaffold1345 flankbed promoter 251835 251891 . - . ID=CGI_10016283; scaffold1345 TRF Tandem_Repeat 251835 251891 105 + . . scaffold1347 flankbed promoter 21728 21850 . - . ID=CGI_10012971; scaffold1347 WUBlastX LTR_Gypsy-Cigr 21728 21850 24 + . . scaffold1347 flankbed promoter 21927 22226 . - . ID=CGI_10012971; scaffold1347 WUBlastX LTR_Gypsy-Cigr 21927 22226 94 + . . scaffold1347 flankbed promoter 21903 22255 . - . ID=CGI_10012971; scaffold1347 WUBlastX LTR_Gypsy 21903 22289 70 + . . scaffold1348 flankbed promoter 390 435 . + . ID=CGI_10008055; scaffold1348 TRF Tandem_Repeat 390 435 92 + . . scaffold1348 flankbed promoter 9268 9313 . + . ID=CGI_10008059; scaffold1348 TRF Tandem_Repeat 9268 9313 92 + . . scaffold1348 flankbed promoter 13768 13829 . + . ID=CGI_10008061; scaffold1348 TRF Tandem_Repeat 13768 13829 65 + . . scaffold1348 flankbed promoter 55362 55424 . + . ID=CGI_10008067; scaffold1348 TRF Tandem_Repeat 55362 55424 60 + . . scaffold1348 flankbed promoter 60867 60924 . + . ID=CGI_10008071; scaffold1348 TRF Tandem_Repeat 60867 60924 116 + . . scaffold1348 flankbed promoter 68407 68464 . + . ID=CGI_10008076; scaffold1348 TRF Tandem_Repeat 68407 68464 116 + . . scaffold1348 flankbed promoter 75957 76014 . + . ID=CGI_10008081; scaffold1348 TRF Tandem_Repeat 75957 76014 116 + . . scaffold1348 flankbed promoter 83503 83568 . + . ID=CGI_10008086; scaffold1348 TRF Tandem_Repeat 83503 83568 114 + . . scaffold1348 flankbed promoter 86607 86668 . + . ID=CGI_10008087; scaffold1348 TRF Tandem_Repeat 86607 86668 65 + . . scaffold1348 flankbed promoter 165846 166128 . + . ID=CGI_10008093; scaffold1348 TRF Tandem_Repeat 165659 166128 493 + . . scaffold1349 flankbed promoter 230707 230763 . - . ID=CGI_10009943; scaffold1349 TRF Tandem_Repeat 230707 230763 114 + . . scaffold1350 flankbed promoter 377186 377404 . + . ID=CGI_10017315; scaffold1350 TRF Tandem_Repeat 377186 377404 375 + . . scaffold1350 flankbed promoter 377585 377621 . + . ID=CGI_10017315; scaffold1350 TRF Tandem_Repeat 377585 377621 74 + . . scaffold1350 flankbed promoter 385023 385048 . + . ID=CGI_10017316; scaffold1350 TRF Tandem_Repeat 385023 385048 52 + . . scaffold1352 flankbed promoter 1800 1863 . - . ID=CGI_10018405; scaffold1352 TRF Tandem_Repeat 1800 1863 114 + . . scaffold1352 flankbed promoter 25471 25514 . - . ID=CGI_10018406; scaffold1352 TRF Tandem_Repeat 25471 25514 88 + . . scaffold1352 flankbed promoter 25471 25514 . + . ID=CGI_10018407; scaffold1352 TRF Tandem_Repeat 25471 25514 88 + . . scaffold1352 flankbed promoter 55764 55799 . - . ID=CGI_10018408; scaffold1352 TRF Tandem_Repeat 55764 55799 54 + . . scaffold1352 flankbed promoter 55764 55811 . - . ID=CGI_10018408; scaffold1352 TRF Tandem_Repeat 55764 55811 69 + . . scaffold1352 flankbed promoter 101227 101331 . + . ID=CGI_10018411; scaffold1352 TRF Tandem_Repeat 101183 101331 163 + . . scaffold1352 flankbed promoter 244666 244699 . + . ID=CGI_10018418; scaffold1352 TRF Tandem_Repeat 244666 244699 50 + . . scaffold1354 flankbed promoter 183389 183687 . - . ID=CGI_10014935; scaffold1354 TRF Tandem_Repeat 183389 183687 521 + . . scaffold1354 flankbed promoter 183389 183687 . + . ID=CGI_10014936; scaffold1354 TRF Tandem_Repeat 183389 183687 521 + . . scaffold1354 flankbed promoter 317236 317262 . + . ID=CGI_10014940; scaffold1354 TRF Tandem_Repeat 317236 317262 54 + . . scaffold1354 flankbed promoter 367627 367673 . + . ID=CGI_10014945; scaffold1354 TRF Tandem_Repeat 367627 367673 94 + . . scaffold1357 flankbed promoter 7074 7449 . + . ID=CGI_10004033; scaffold1357 WUBlastX LTR_Gypsy-Cigr 5818 7449 1211 + . . scaffold1358 flankbed promoter 7957 7998 . - . ID=CGI_10011352; scaffold1358 TRF Tandem_Repeat 7957 7998 84 + . . scaffold1358 flankbed promoter 252534 252577 . - . ID=CGI_10011358; scaffold1358 TRF Tandem_Repeat 252534 252577 81 + . . scaffold1359 flankbed promoter 56490 56524 . - . ID=CGI_10013232; scaffold1359 TRF Tandem_Repeat 56490 56524 61 + . . scaffold1359 flankbed promoter 56555 56589 . - . ID=CGI_10013232; scaffold1359 TRF Tandem_Repeat 56555 56589 70 + . . scaffold1359 flankbed promoter 57070 57319 . - . ID=CGI_10013232; scaffold1359 WUBlastX LINE_RTE-X 57070 57498 114 + . . scaffold1359 flankbed promoter 57061 57319 . - . ID=CGI_10013232; scaffold1359 WUBlastX LINE_RTE-X 57061 57381 117 + . . scaffold1359 flankbed promoter 120046 120070 . + . ID=CGI_10013234; scaffold1359 TRF Tandem_Repeat 120046 120070 50 + . . scaffold1359 flankbed promoter 231669 232058 . - . ID=CGI_10013244; scaffold1359 WUBlastX DNA_IS4EU 231669 232058 75 + . . scaffold1359 flankbed promoter 231437 232034 . - . ID=CGI_10013244; scaffold1359 WUBlastX DNA_IS4EU 231420 232034 27 + . . scaffold1359 flankbed promoter 232215 232349 . - . ID=CGI_10013244; scaffold1359 WUBlastX DNA_IS4EU 232215 232349 28 + . . scaffold1359 flankbed promoter 231437 231992 . - . ID=CGI_10013244; scaffold1359 WUBlastX DNA_IS4EU 231114 231992 27 + . . scaffold1360 flankbed promoter 118591 118656 . + . ID=CGI_10022627; scaffold1360 TRF Tandem_Repeat 118591 118656 125 + . . scaffold1360 flankbed promoter 138104 138143 . - . ID=CGI_10022630; scaffold1360 TRF Tandem_Repeat 138104 138143 80 + . . scaffold1360 flankbed promoter 138203 138267 . - . ID=CGI_10022630; scaffold1360 TRF Tandem_Repeat 138203 138267 130 + . . scaffold1360 flankbed promoter 148943 149007 . - . ID=CGI_10022632; scaffold1360 TRF Tandem_Repeat 148943 149007 121 + . . scaffold1360 flankbed promoter 149213 149473 . - . ID=CGI_10022632; scaffold1360 TRF Tandem_Repeat 149213 149583 476 + . . scaffold1360 flankbed promoter 172962 173013 . - . ID=CGI_10022634; scaffold1360 TRF Tandem_Repeat 172962 173013 104 + . . scaffold1360 flankbed promoter 367867 367895 . - . ID=CGI_10022651; scaffold1360 TRF Tandem_Repeat 367867 367895 58 + . . scaffold1360 flankbed promoter 376011 376105 . + . ID=CGI_10022652; scaffold1360 TRF Tandem_Repeat 375924 376105 178 + . . scaffold1360 flankbed promoter 605598 605644 . + . ID=CGI_10022661; scaffold1360 TRF Tandem_Repeat 605598 605644 94 + . . scaffold1360 flankbed promoter 605644 605677 . + . ID=CGI_10022661; scaffold1360 TRF Tandem_Repeat 605644 605677 68 + . . scaffold1360 flankbed promoter 605816 605870 . + . ID=CGI_10022661; scaffold1360 TRF Tandem_Repeat 605816 605870 101 + . . scaffold1360 flankbed promoter 631259 631501 . - . ID=CGI_10022664; scaffold1360 WUBlastX DNA_TcMar-Marin 631259 631501 85 - . . scaffold1360 flankbed promoter 732128 732183 . + . ID=CGI_10022670; scaffold1360 TRF Tandem_Repeat 732128 732183 76 + . . scaffold1360 flankbed promoter 732240 732386 . + . ID=CGI_10022670; scaffold1360 WUBlastX LINE_CR1-L2 732240 732386 29 + . . scaffold1360 flankbed promoter 744269 744310 . + . ID=CGI_10022671; scaffold1360 TRF Tandem_Repeat 744269 744310 84 + . . scaffold1360 flankbed promoter 743929 744032 . + . ID=CGI_10022671; scaffold1360 WUBlastX LINE_RTE-X 743856 744032 92 + . . scaffold1360 flankbed promoter 744032 744214 . + . ID=CGI_10022671; scaffold1360 WUBlastX LINE_RTE-X 744032 744214 125 + . . scaffold1362 flankbed promoter 502068 502472 . - . ID=CGI_10023944; scaffold1362 WUBlastX RC_Helitron 501669 502472 51 - . . scaffold1362 flankbed promoter 502068 502433 . - . ID=CGI_10023944; scaffold1362 WUBlastX RC_Helitron 501855 502433 177 - . . scaffold1362 flankbed promoter 501669 502472 . + . ID=CGI_10023945; scaffold1362 WUBlastX RC_Helitron 501669 502472 51 - . . scaffold1362 flankbed promoter 501855 502433 . + . ID=CGI_10023945; scaffold1362 WUBlastX RC_Helitron 501855 502433 177 - . . scaffold1362 flankbed promoter 622619 622858 . - . ID=CGI_10023951; scaffold1362 TRF Tandem_Repeat 622619 622858 408 + . . scaffold1362 flankbed promoter 771108 771132 . - . ID=CGI_10023961; scaffold1362 TRF Tandem_Repeat 771108 771132 50 + . . scaffold1366 flankbed promoter 13333 13586 . + . ID=CGI_10012281; scaffold1366 TRF Tandem_Repeat 13333 13586 355 + . . scaffold1366 flankbed promoter 29532 29595 . + . ID=CGI_10012283; scaffold1366 TRF Tandem_Repeat 29532 29595 83 + . . scaffold1366 flankbed promoter 32187 32252 . + . ID=CGI_10012285; scaffold1366 WUBlastX LTR_Gypsy 31635 32252 50 + . . scaffold1366 flankbed promoter 32187 32297 . + . ID=CGI_10012285; scaffold1366 WUBlastX LTR_Copia 32025 32297 47 + . . scaffold1366 flankbed promoter 62384 62496 . + . ID=CGI_10012287; scaffold1366 TRF Tandem_Repeat 62384 62496 187 + . . scaffold1366 flankbed promoter 90467 90532 . - . ID=CGI_10012290; scaffold1366 TRF Tandem_Repeat 90467 90532 123 + . . scaffold1366 flankbed promoter 140827 141117 . - . ID=CGI_10012293; scaffold1366 WUBlastX LINE_RTE-X 140827 141117 91 - . . scaffold1366 flankbed promoter 140956 141105 . - . ID=CGI_10012293; scaffold1366 WUBlastX LINE_RTE-X 140956 141105 93 - . . scaffold1371 flankbed promoter 27776 27859 . + . ID=CGI_10005455; scaffold1371 TRF Tandem_Repeat 27776 27859 105 + . . scaffold1372 flankbed promoter 22592 22616 . - . ID=CGI_10015659; scaffold1372 TRF Tandem_Repeat 22592 22616 50 + . . scaffold1372 flankbed promoter 69916 69949 . - . ID=CGI_10015662; scaffold1372 TRF Tandem_Repeat 69916 69949 59 + . . scaffold1372 flankbed promoter 70062 70123 . - . ID=CGI_10015662; scaffold1372 TRF Tandem_Repeat 70062 70123 70 + . . scaffold1374 flankbed promoter 58640 58999 . + . ID=CGI_10003419; scaffold1374 TRF Tandem_Repeat 58640 58999 361 + . . scaffold1377 flankbed promoter 4128 4332 . + . ID=CGI_10008617; scaffold1377 TRF Tandem_Repeat 4128 4332 146 + . . scaffold1377 flankbed promoter 4092 4368 . + . ID=CGI_10008617; scaffold1377 TRF Tandem_Repeat 4092 4368 509 + . . scaffold1377 flankbed promoter 4134 4315 . + . ID=CGI_10008617; scaffold1377 TRF Tandem_Repeat 4134 4315 118 + . . scaffold1377 flankbed promoter 106366 106878 . + . ID=CGI_10008620; scaffold1377 WUBlastX LINE_L1 106366 107070 139 + . . scaffold1377 flankbed promoter 106231 106878 . + . ID=CGI_10008620; scaffold1377 WUBlastX LINE_L1 106231 107109 36 + . . scaffold1377 flankbed promoter 172764 172993 . + . ID=CGI_10008622; scaffold1377 WUBlastX LINE_L1 172764 173000 30 + . . scaffold1377 flankbed promoter 172991 172993 . + . ID=CGI_10008622; scaffold1377 WUBlastX LINE_L1 172991 173335 80 + . . scaffold1377 flankbed promoter 178717 178804 . + . ID=CGI_10008623; scaffold1377 TRF Tandem_Repeat 178717 178804 158 + . . scaffold1377 flankbed promoter 212449 213197 . - . ID=CGI_10008624; scaffold1377 TRF Tandem_Repeat 212449 213217 887 + . . scaffold138 flankbed promoter 56964 57011 . - . ID=CGI_10008425; scaffold138 TRF Tandem_Repeat 56964 57011 96 + . . scaffold138 flankbed promoter 167657 167688 . - . ID=CGI_10008431; scaffold138 TRF Tandem_Repeat 167657 167688 64 + . . scaffold1382 flankbed promoter 218920 218943 . + . ID=CGI_10011178; scaffold1382 WUBlastX DNA_Harbinger 218920 219264 170 + . . scaffold1382 flankbed promoter 217967 218074 . + . ID=CGI_10011178; scaffold1382 WUBlastX DNA_Harbinger 217967 218074 21 + . . scaffold1382 flankbed promoter 219830 219946 . + . ID=CGI_10011179; scaffold1382 WUBlastX DNA_Harbinger 219830 219946 37 + . . scaffold1382 flankbed promoter 219173 219264 . + . ID=CGI_10011179; scaffold1382 WUBlastX DNA_Harbinger 218920 219264 170 + . . scaffold1382 flankbed promoter 219353 219634 . + . ID=CGI_10011179; scaffold1382 WUBlastX DNA_Harbinger 219353 219634 220 + . . scaffold1382 flankbed promoter 219830 219946 . + . ID=CGI_10011180; scaffold1382 WUBlastX DNA_Harbinger 219830 219946 37 + . . scaffold1385 flankbed promoter 33279 33327 . - . ID=CGI_10013835; scaffold1385 TRF Tandem_Repeat 33279 33327 98 + . . scaffold1385 flankbed promoter 48203 48261 . + . ID=CGI_10013839; scaffold1385 TRF Tandem_Repeat 48203 48261 118 + . . scaffold1386 flankbed promoter 8699 8764 . - . ID=CGI_10005445; scaffold1386 TRF Tandem_Repeat 8699 8764 132 + . . scaffold1391 flankbed promoter 204384 204834 . - . ID=CGI_10016938; scaffold1391 TRF Tandem_Repeat 204384 204834 498 + . . scaffold1391 flankbed promoter 204652 204796 . - . ID=CGI_10016938; scaffold1391 TRF Tandem_Repeat 204652 204796 182 + . . scaffold1391 flankbed promoter 197599 197653 . + . ID=CGI_10016939; scaffold1391 TRF Tandem_Repeat 197599 197653 110 + . . scaffold1397 flankbed promoter 34957 35038 . - . ID=CGI_10017113; scaffold1397 WUBlastX LTR_Gypsy 34957 35226 35 - . . scaffold1397 flankbed promoter 34957 35038 . - . ID=CGI_10017113; scaffold1397 WUBlastX LTR_Gypsy 34957 35283 26 - . . scaffold1397 flankbed promoter 34852 35038 . - . ID=CGI_10017113; scaffold1397 WUBlastX LTR_Gypsy 34852 35052 50 - . . scaffold1397 flankbed promoter 34822 35010 . - . ID=CGI_10017113; scaffold1397 WUBlastX LTR_Gypsy 34822 35010 31 - . . scaffold1397 flankbed promoter 23130 23366 . + . ID=CGI_10017114; scaffold1397 WUBlastX LTR_Ngaro 23130 24074 173 + . . scaffold1397 flankbed promoter 134947 135078 . + . ID=CGI_10017117; scaffold1397 WUBlastX DNA_Sola 134947 135828 35 + . . scaffold1397 flankbed promoter 280006 280233 . + . ID=CGI_10017121; scaffold1397 WUBlastX DNA_hAT-Tip100 280006 280527 75 + . . scaffold1399 flankbed promoter 4675 4914 . - . ID=CGI_10007045; scaffold1399 WUBlastX DNA_Sola 4675 4914 42 - . . scaffold1399 flankbed promoter 5236 5557 . - . ID=CGI_10007045; scaffold1399 WUBlastX DNA_Sola 5236 6015 114 - . . scaffold1399 flankbed promoter 94736 94790 . + . ID=CGI_10007050; scaffold1399 TRF Tandem_Repeat 94736 94790 110 + . . scaffold1399 flankbed promoter 94968 94997 . + . ID=CGI_10007050; scaffold1399 TRF Tandem_Repeat 94968 94997 60 + . . scaffold1399 flankbed promoter 94968 95026 . + . ID=CGI_10007050; scaffold1399 TRF Tandem_Repeat 94968 95026 64 + . . scaffold1399 flankbed promoter 95521 95587 . + . ID=CGI_10007050; scaffold1399 TRF Tandem_Repeat 95521 95587 89 + . . scaffold1399 flankbed promoter 124879 124916 . - . ID=CGI_10007051; scaffold1399 TRF Tandem_Repeat 124879 124916 76 + . . scaffold140 flankbed promoter 213113 213211 . + . ID=CGI_10020128; scaffold140 TRF Tandem_Repeat 213113 213211 182 + . . scaffold140 flankbed promoter 212971 213064 . + . ID=CGI_10020128; scaffold140 TRF Tandem_Repeat 212971 213064 125 + . . scaffold140 flankbed promoter 326588 326624 . - . ID=CGI_10020134; scaffold140 TRF Tandem_Repeat 326588 326624 56 + . . scaffold140 flankbed promoter 327156 327233 . + . ID=CGI_10020135; scaffold140 TRF Tandem_Repeat 327156 327233 147 + . . scaffold140 flankbed promoter 370791 370829 . - . ID=CGI_10020136; scaffold140 TRF Tandem_Repeat 370791 370829 78 + . . scaffold140 flankbed promoter 596889 597366 . + . ID=CGI_10020147; scaffold140 TRF Tandem_Repeat 596693 597366 852 + . . scaffold140 flankbed promoter 624809 624967 . + . ID=CGI_10020150; scaffold140 TRF Tandem_Repeat 624809 624967 189 + . . scaffold140 flankbed promoter 624871 624967 . + . ID=CGI_10020151; scaffold140 TRF Tandem_Repeat 624809 624967 189 + . . scaffold1401 flankbed promoter 6620 6634 . - . ID=CGI_10001278; scaffold1401 WUBlastX LINE_L2 6296 6634 59 - . . scaffold1401 flankbed promoter 6620 6622 . - . ID=CGI_10001278; scaffold1401 WUBlastX LINE_L2 6338 6622 84 - . . scaffold1402 flankbed promoter 76337 76390 . - . ID=CGI_10017574; scaffold1402 TRF Tandem_Repeat 76337 76390 55 + . . scaffold1402 flankbed promoter 76337 76390 . - . ID=CGI_10017574; scaffold1402 TRF Tandem_Repeat 76337 76390 60 + . . scaffold1402 flankbed promoter 184054 184105 . + . ID=CGI_10017582; scaffold1402 TRF Tandem_Repeat 184054 184105 79 + . . scaffold1402 flankbed promoter 248364 248495 . - . ID=CGI_10017583; scaffold1402 TRF Tandem_Repeat 248364 248495 133 + . . scaffold1403 flankbed promoter 14513 14635 . - . ID=CGI_10020155; scaffold1403 WUBlastX LTR_Pao 13838 14635 48 - . . scaffold1403 flankbed promoter 153619 153823 . + . ID=CGI_10020164; scaffold1403 WUBlastX DNA_Sola 151964 153823 135 + . . scaffold1403 flankbed promoter 153619 153829 . + . ID=CGI_10020164; scaffold1403 WUBlastX DNA_Sola 152807 153829 168 + . . scaffold1403 flankbed promoter 455753 455785 . - . ID=CGI_10020177; scaffold1403 TRF Tandem_Repeat 455753 455785 50 + . . scaffold1403 flankbed promoter 503341 503407 . - . ID=CGI_10020180; scaffold1403 TRF Tandem_Repeat 503341 503407 134 + . . scaffold1403 flankbed promoter 613513 613819 . - . ID=CGI_10020188; scaffold1403 WUBlastX LTR_DIRS 613513 614202 45 - . . scaffold1403 flankbed promoter 612820 613479 . - . ID=CGI_10020188; scaffold1403 WUBlastX LTR_DIRS 612223 613479 233 - . . scaffold1403 flankbed promoter 612820 613819 . - . ID=CGI_10020188; scaffold1403 WUBlastX LTR_DIRS 612331 614001 184 - . . scaffold1403 flankbed promoter 613633 613819 . - . ID=CGI_10020188; scaffold1403 WUBlastX LTR_Gypsy 613633 614091 47 - . . scaffold1404 flankbed promoter 14973 15022 . - . ID=CGI_10008822; scaffold1404 TRF Tandem_Repeat 14973 15022 91 + . . scaffold1404 flankbed promoter 14973 15023 . - . ID=CGI_10008822; scaffold1404 TRF Tandem_Repeat 14973 15023 66 + . . scaffold1404 flankbed promoter 17225 17255 . + . ID=CGI_10008823; scaffold1404 TRF Tandem_Repeat 17225 17255 62 + . . scaffold1409 flankbed promoter 2802 2842 . - . ID=CGI_10013776; scaffold1409 TRF Tandem_Repeat 2802 2842 82 + . . scaffold1409 flankbed promoter 52437 52496 . + . ID=CGI_10013781; scaffold1409 TRF Tandem_Repeat 52437 52496 120 + . . scaffold1409 flankbed promoter 87860 87911 . - . ID=CGI_10013782; scaffold1409 TRF Tandem_Repeat 87860 87911 104 + . . scaffold1409 flankbed promoter 268191 268488 . + . ID=CGI_10013786; scaffold1409 TRF Tandem_Repeat 268191 268488 488 + . . scaffold1409 flankbed promoter 292199 292263 . - . ID=CGI_10013787; scaffold1409 TRF Tandem_Repeat 292199 292263 121 + . . scaffold1411 flankbed promoter 88845 88894 . - . ID=CGI_10009186; scaffold1411 TRF Tandem_Repeat 88845 88894 91 + . . scaffold1411 flankbed promoter 123888 124405 . + . ID=CGI_10009188; scaffold1411 WUBlastX LTR_Gypsy 123536 124405 167 + . . scaffold1411 flankbed promoter 123888 124228 . + . ID=CGI_10009188; scaffold1411 WUBlastX LTR_Gypsy 120572 124228 2001 + . . scaffold1411 flankbed promoter 123888 124207 . + . ID=CGI_10009188; scaffold1411 WUBlastX LTR_Gypsy-Cigr 121268 124207 2172 + . . scaffold1411 flankbed promoter 161309 161395 . - . ID=CGI_10009192; scaffold1411 TRF Tandem_Repeat 161309 161395 95 + . . scaffold1411 flankbed promoter 161475 161648 . - . ID=CGI_10009192; scaffold1411 TRF Tandem_Repeat 161475 161648 195 + . . scaffold1411 flankbed promoter 161475 161648 . - . ID=CGI_10009192; scaffold1411 TRF Tandem_Repeat 161475 161648 177 + . . scaffold1411 flankbed promoter 208616 209522 . + . ID=CGI_10009195; scaffold1411 TRF Tandem_Repeat 208616 209522 1110 + . . scaffold1417 flankbed promoter 35257 35328 . + . ID=CGI_10005070; scaffold1417 WUBlastX LTR_Gypsy 34711 35328 55 + . . scaffold1417 flankbed promoter 35257 35373 . + . ID=CGI_10005070; scaffold1417 WUBlastX LTR_Copia 35104 35373 53 + . . scaffold1417 flankbed promoter 59793 60053 . + . ID=CGI_10005071; scaffold1417 TRF Tandem_Repeat 59793 60053 255 + . . scaffold142 flankbed promoter 46898 47146 . - . ID=CGI_10026754; scaffold142 WUBlastX LTR_ERVK 46898 47146 54 - . . scaffold142 flankbed promoter 157686 158349 . - . ID=CGI_10026755; scaffold142 WUBlastX LINE_CR1 157681 158349 220 - . . scaffold142 flankbed promoter 213411 213419 . - . ID=CGI_10026758; scaffold142 TRF Tandem_Repeat 213411 214121 955 + . . scaffold142 flankbed promoter 588925 589137 . + . ID=CGI_10026767; scaffold142 TRF Tandem_Repeat 588925 589137 198 + . . scaffold142 flankbed promoter 588985 589137 . + . ID=CGI_10026767; scaffold142 TRF Tandem_Repeat 588985 589137 216 + . . scaffold142 flankbed promoter 1042900 1042934 . - . ID=CGI_10026784; scaffold142 TRF Tandem_Repeat 1042900 1042934 70 + . . scaffold142 flankbed promoter 1043129 1043161 . - . ID=CGI_10026784; scaffold142 TRF Tandem_Repeat 1043129 1043161 66 + . . scaffold142 flankbed promoter 1176124 1176302 . - . ID=CGI_10026795; scaffold142 TRF Tandem_Repeat 1176124 1176302 340 + . . scaffold142 flankbed promoter 1177775 1178512 . - . ID=CGI_10026796; scaffold142 WUBlastX DNA_En-Spm 1177775 1179697 1165 - . . scaffold142 flankbed promoter 1238490 1238575 . + . ID=CGI_10026798; scaffold142 TRF Tandem_Repeat 1238490 1238575 59 + . . scaffold142 flankbed promoter 1238489 1238616 . + . ID=CGI_10026798; scaffold142 TRF Tandem_Repeat 1238489 1238616 177 + . . scaffold142 flankbed promoter 1243595 1243869 . + . ID=CGI_10026799; scaffold142 WUBlastX DNA_MuDR 1243595 1243918 103 + . . scaffold1423 flankbed promoter 92798 92845 . - . ID=CGI_10025410; scaffold1423 TRF Tandem_Repeat 92798 92845 96 + . . scaffold1423 flankbed promoter 198253 198314 . + . ID=CGI_10025422; scaffold1423 WUBlastX DNA_hAT 198099 198314 45 - . . scaffold1423 flankbed promoter 698957 698993 . - . ID=CGI_10025437; scaffold1423 TRF Tandem_Repeat 698957 698993 74 + . . scaffold1423 flankbed promoter 699076 699267 . - . ID=CGI_10025437; scaffold1423 WUBlastX LINE_L1-Tx1 699076 699267 21 + . . scaffold1423 flankbed promoter 699115 699270 . - . ID=CGI_10025437; scaffold1423 WUBlastX LINE_L1-Tx1 699115 699270 53 + . . scaffold1423 flankbed promoter 850731 850845 . + . ID=CGI_10025441; scaffold1423 TRF Tandem_Repeat 850731 850845 65 + . . scaffold1423 flankbed promoter 894302 894354 . - . ID=CGI_10025442; scaffold1423 TRF Tandem_Repeat 894302 894354 106 + . . scaffold1423 flankbed promoter 1041867 1041990 . + . ID=CGI_10025452; scaffold1423 WUBlastX LTR_Gypsy-Cigr 1041085 1041990 619 + . . scaffold1423 flankbed promoter 1041986 1042408 . + . ID=CGI_10025452; scaffold1423 WUBlastX LTR_Gypsy-Cigr 1041986 1042408 165 + . . scaffold1423 flankbed promoter 1042356 1042601 . + . ID=CGI_10025452; scaffold1423 WUBlastX LTR_Copia 1042356 1042601 60 + . . scaffold1423 flankbed promoter 1042715 1042828 . + . ID=CGI_10025452; scaffold1423 WUBlastX LTR_Gypsy 1042715 1042828 27 + . . scaffold1424 flankbed promoter 32463 32790 . + . ID=CGI_10005349; scaffold1424 TRF Tandem_Repeat 31981 32790 469 + . . scaffold1424 flankbed promoter 32463 32812 . + . ID=CGI_10005349; scaffold1424 TRF Tandem_Repeat 31912 32812 583 + . . scaffold1424 flankbed promoter 52871 53639 . + . ID=CGI_10005350; scaffold1424 WUBlastX LINE_CR1 52869 53639 196 + . . scaffold1424 flankbed promoter 53217 53870 . + . ID=CGI_10005350; scaffold1424 WUBlastX LINE_I 53217 54119 22 + . . scaffold1424 flankbed promoter 53466 53795 . + . ID=CGI_10005350; scaffold1424 WUBlastX LINE_L1 53466 53795 28 + . . scaffold1424 flankbed promoter 123975 124016 . - . ID=CGI_10005352; scaffold1424 TRF Tandem_Repeat 123975 124016 84 + . . scaffold1426 flankbed promoter 56658 56844 . - . ID=CGI_10003026; scaffold1426 TRF Tandem_Repeat 56658 56844 374 + . . scaffold1427 flankbed promoter 110869 111493 . + . ID=CGI_10005233; scaffold1427 TRF Tandem_Repeat 110868 111493 601 + . . scaffold143 flankbed promoter 16065 16325 . + . ID=CGI_10010006; scaffold143 WUBlastX LTR_Ngaro 16065 16325 46 + . . scaffold143 flankbed promoter 80244 80543 . - . ID=CGI_10010008; scaffold143 WUBlastX LTR_Gypsy 80244 80543 54 - . . scaffold143 flankbed promoter 80165 80392 . - . ID=CGI_10010008; scaffold143 WUBlastX LTR_Gypsy 79955 80392 53 - . . scaffold143 flankbed promoter 80517 80543 . - . ID=CGI_10010009; scaffold143 WUBlastX LTR_Gypsy 80244 80543 54 - . . scaffold143 flankbed promoter 85950 86043 . + . ID=CGI_10010010; scaffold143 TRF Tandem_Repeat 85950 86043 89 + . . scaffold143 flankbed promoter 169610 169728 . - . ID=CGI_10010014; scaffold143 TRF Tandem_Repeat 169610 170011 547 + . . scaffold143 flankbed promoter 221878 222171 . - . ID=CGI_10010016; scaffold143 TRF Tandem_Repeat 221878 222395 941 + . . scaffold1431 flankbed promoter 80233 80364 . - . ID=CGI_10004391; scaffold1431 WUBlastX DNA_Sola 79483 80364 35 - . . scaffold1438 flankbed promoter 36494 36835 . - . ID=CGI_10002216; scaffold1438 WUBlastX LINE_RTE-X 36494 36835 75 + . . scaffold144 flankbed promoter 57142 57203 . + . ID=CGI_10022878; scaffold144 TRF Tandem_Repeat 57142 57203 81 + . . scaffold144 flankbed promoter 73641 73984 . - . ID=CGI_10022879; scaffold144 TRF Tandem_Repeat 73641 73984 206 + . . scaffold144 flankbed promoter 190139 190207 . + . ID=CGI_10022887; scaffold144 TRF Tandem_Repeat 190139 190207 104 + . . scaffold144 flankbed promoter 345187 345229 . - . ID=CGI_10022896; scaffold144 TRF Tandem_Repeat 345187 345229 68 + . . scaffold144 flankbed promoter 633071 633734 . - . ID=CGI_10022904; scaffold144 WUBlastX LTR_Ngaro 633071 633940 350 - . . scaffold144 flankbed promoter 632990 633226 . - . ID=CGI_10022904; scaffold144 WUBlastX LTR_DIRS 632990 633226 40 - . . scaffold1440 flankbed promoter 43760 44331 . - . ID=CGI_10008353; scaffold1440 WUBlastX DNA_Maverick 43760 45175 723 + . . scaffold1440 flankbed promoter 80361 80404 . - . ID=CGI_10008356; scaffold1440 TRF Tandem_Repeat 80361 80404 88 + . . scaffold1440 flankbed promoter 80532 80747 . - . ID=CGI_10008356; scaffold1440 WUBlastX RC_Helitron 80532 80747 50 + . . scaffold1442 flankbed promoter 38699 38723 . - . ID=CGI_10003584; scaffold1442 WUBlastX LINE_CR1 38562 38723 32 - . . scaffold1442 flankbed promoter 72694 72881 . + . ID=CGI_10003587; scaffold1442 WUBlastX DNA_En-Spm 72694 72918 31 - . . scaffold1445 flankbed promoter 115295 115343 . - . ID=CGI_10010367; scaffold1445 TRF Tandem_Repeat 115295 115343 98 + . . scaffold1445 flankbed promoter 192967 193506 . - . ID=CGI_10010371; scaffold1445 WUBlastX LTR_Gypsy-Cigr 192967 193578 164 - . . scaffold1445 flankbed promoter 212025 212104 . + . ID=CGI_10010373; scaffold1445 TRF Tandem_Repeat 212025 212104 97 + . . scaffold1445 flankbed promoter 249254 249379 . - . ID=CGI_10010375; scaffold1445 WUBlastX LTR_Gypsy 249077 249379 31 - . . scaffold1445 flankbed promoter 259400 259538 . + . ID=CGI_10010376; scaffold1445 TRF Tandem_Repeat 259399 259538 110 + . . scaffold1445 flankbed promoter 259448 259741 . + . ID=CGI_10010376; scaffold1445 TRF Tandem_Repeat 259448 259741 196 + . . scaffold1445 flankbed promoter 260281 260326 . + . ID=CGI_10010376; scaffold1445 TRF Tandem_Repeat 260281 260326 92 + . . scaffold1447 flankbed promoter 163982 164127 . + . ID=CGI_10013820; scaffold1447 TRF Tandem_Repeat 163982 164127 107 + . . scaffold1447 flankbed promoter 164154 164336 . + . ID=CGI_10013820; scaffold1447 TRF Tandem_Repeat 164154 164336 161 + . . scaffold1447 flankbed promoter 228414 228507 . - . ID=CGI_10013823; scaffold1447 TRF Tandem_Repeat 228414 228507 107 + . . scaffold1448 flankbed promoter 31615 31899 . - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 31489 31899 60 - . . scaffold1448 flankbed promoter 31684 31899 . - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 31684 31899 127 - . . scaffold1448 flankbed promoter 31898 32194 . - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 31898 32194 31 - . . scaffold1448 flankbed promoter 31934 32110 . - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 31934 32110 41 - . . scaffold1448 flankbed promoter 191636 191820 . - . ID=CGI_10011855; scaffold1448 WUBlastX LTR_Gypsy 191636 195115 2993 - . . scaffold1448 flankbed promoter 191408 191605 . - . ID=CGI_10011855; scaffold1448 WUBlastX LTR_Copia 191408 191605 22 - . . scaffold1448 flankbed promoter 191447 191602 . - . ID=CGI_10011855; scaffold1448 WUBlastX LTR_Gypsy 191447 191602 22 - . . scaffold1448 flankbed promoter 191504 191620 . - . ID=CGI_10011855; scaffold1448 WUBlastX LTR_Gypsy 191504 191620 25 - . . scaffold1448 flankbed promoter 248947 248977 . - . ID=CGI_10011858; scaffold1448 TRF Tandem_Repeat 248947 248977 62 + . . scaffold1448 flankbed promoter 268916 268972 . - . ID=CGI_10011859; scaffold1448 WUBlastX DNA_Kolobok-Hyd 268778 268972 41 - . . scaffold1448 flankbed promoter 269216 269915 . - . ID=CGI_10011859; scaffold1448 WUBlastX DNA_IS4EU 269216 269920 80 - . . scaffold1448 flankbed promoter 269630 269915 . - . ID=CGI_10011859; scaffold1448 WUBlastX DNA_Kolobok-Hyd 269630 270040 23 - . . scaffold1449 flankbed promoter 53289 53353 . - . ID=CGI_10010690; scaffold1449 TRF Tandem_Repeat 53289 53353 123 + . . scaffold1449 flankbed promoter 66909 67130 . + . ID=CGI_10010691; scaffold1449 WUBlastX LINE_RTE-X 66909 67130 113 + . . scaffold1449 flankbed promoter 66834 67121 . + . ID=CGI_10010691; scaffold1449 WUBlastX LINE_RTE-X 66834 67121 81 + . . scaffold1449 flankbed promoter 66747 66839 . + . ID=CGI_10010691; scaffold1449 WUBlastX LINE_RTE-X 66597 66839 97 + . . scaffold1449 flankbed promoter 66906 67184 . + . ID=CGI_10010691; scaffold1449 WUBlastX LINE_RTE-X 66906 67184 72 + . . scaffold1449 flankbed promoter 66747 66818 . + . ID=CGI_10010691; scaffold1449 WUBlastX LINE_CR1 66522 66818 20 + . . scaffold1449 flankbed promoter 89691 89730 . + . ID=CGI_10010693; scaffold1449 TRF Tandem_Repeat 89691 89730 80 + . . scaffold1449 flankbed promoter 203488 203790 . + . ID=CGI_10010696; scaffold1449 WUBlastX DNA_Kolobok-Hyd 203488 204075 52 + . . scaffold1449 flankbed promoter 250415 250441 . + . ID=CGI_10010699; scaffold1449 TRF Tandem_Repeat 250415 250441 54 + . . scaffold145 flankbed promoter 441171 441230 . - . ID=CGI_10026557; scaffold145 TRF Tandem_Repeat 441171 441230 113 + . . scaffold145 flankbed promoter 454722 454770 . - . ID=CGI_10026558; scaffold145 TRF Tandem_Repeat 454722 454770 53 + . . scaffold145 flankbed promoter 684078 684548 . - . ID=CGI_10026561; scaffold145 WUBlastX RC_Helitron 684078 684629 86 - . . scaffold145 flankbed promoter 1139296 1139721 . + . ID=CGI_10026576; scaffold145 WUBlastX LINE_RTE-BovB 1139296 1139721 32 - . . scaffold145 flankbed promoter 1139494 1139739 . + . ID=CGI_10026576; scaffold145 WUBlastX LINE_RTE-BovB 1139494 1139739 35 - . . scaffold145 flankbed promoter 1139599 1139739 . + . ID=CGI_10026576; scaffold145 WUBlastX LINE_RTE-BovB 1139599 1139739 66 - . . scaffold1452 flankbed promoter 204319 204360 . - . ID=CGI_10010098; scaffold1452 TRF Tandem_Repeat 204319 204360 57 + . . scaffold1452 flankbed promoter 204319 204360 . - . ID=CGI_10010098; scaffold1452 TRF Tandem_Repeat 204319 204360 57 + . . scaffold1454 flankbed promoter 59494 59554 . - . ID=CGI_10004313; scaffold1454 TRF Tandem_Repeat 59494 59554 122 + . . scaffold1455 flankbed promoter 57372 57486 . - . ID=CGI_10003300; scaffold1455 WUBlastX LTR_Gypsy 57372 58085 83 - . . scaffold1456 flankbed promoter 24546 25256 . + . ID=CGI_10007782; scaffold1456 WUBlastX LTR_Gypsy-Cigr 24414 25256 456 + . . scaffold1456 flankbed promoter 157755 157804 . - . ID=CGI_10007785; scaffold1456 TRF Tandem_Repeat 157755 157804 100 + . . scaffold146 flankbed promoter 10701 10748 . + . ID=CGI_10024878; scaffold146 TRF Tandem_Repeat 10701 10748 96 + . . scaffold146 flankbed promoter 15977 16372 . - . ID=CGI_10024879; scaffold146 WUBlastX LINE_CR1-L2 15977 16372 20 + . . scaffold146 flankbed promoter 16040 16423 . - . ID=CGI_10024879; scaffold146 WUBlastX LINE_L2 16040 16423 97 + . . scaffold146 flankbed promoter 28531 28564 . - . ID=CGI_10024880; scaffold146 TRF Tandem_Repeat 28531 28564 68 + . . scaffold146 flankbed promoter 69500 69582 . + . ID=CGI_10024884; scaffold146 TRF Tandem_Repeat 69500 69582 166 + . . scaffold146 flankbed promoter 381611 382150 . + . ID=CGI_10024900; scaffold146 WUBlastX LINE_RTE-X 381611 382150 97 + . . scaffold146 flankbed promoter 381617 382030 . + . ID=CGI_10024900; scaffold146 WUBlastX LINE_RTE-X 381617 382030 103 + . . scaffold146 flankbed promoter 407838 407899 . + . ID=CGI_10024903; scaffold146 WUBlastX LTR_DIRS 407078 407899 251 - . . scaffold146 flankbed promoter 560649 561137 . + . ID=CGI_10024913; scaffold146 WUBlastX LINE_CR1 560649 561137 123 + . . scaffold146 flankbed promoter 588335 588958 . + . ID=CGI_10024914; scaffold146 WUBlastX LINE_L1 588335 589111 40 + . . scaffold146 flankbed promoter 588299 588859 . + . ID=CGI_10024914; scaffold146 WUBlastX LINE_L2 588299 588859 79 + . . scaffold146 flankbed promoter 588254 588916 . + . ID=CGI_10024914; scaffold146 WUBlastX LINE_L1 588254 588916 58 + . . scaffold1460 flankbed promoter 63648 63715 . - . ID=CGI_10004191; scaffold1460 TRF Tandem_Repeat 63648 63715 118 + . . scaffold1462 flankbed promoter 11242 12065 . + . ID=CGI_10014371; scaffold1462 WUBlastX RC_Helitron 9411 12065 1241 + . . scaffold1462 flankbed promoter 348403 349026 . - . ID=CGI_10014385; scaffold1462 WUBlastX DNA_Maverick 348403 349026 409 - . . scaffold1468 flankbed promoter 135306 135347 . + . ID=CGI_10006780; scaffold1468 TRF Tandem_Repeat 135306 135347 75 + . . scaffold1469 flankbed promoter 114006 114035 . - . ID=CGI_10015413; scaffold1469 TRF Tandem_Repeat 114006 114035 60 + . . scaffold1469 flankbed promoter 327770 327918 . - . ID=CGI_10015427; scaffold1469 TRF Tandem_Repeat 327770 327918 217 + . . scaffold1475 flankbed promoter 141375 141483 . - . ID=CGI_10005954; scaffold1475 TRF Tandem_Repeat 141375 141483 155 + . . scaffold1475 flankbed promoter 141376 141489 . - . ID=CGI_10005954; scaffold1475 TRF Tandem_Repeat 141376 141489 183 + . . scaffold148 flankbed promoter 101045 101109 . + . ID=CGI_10008518; scaffold148 TRF Tandem_Repeat 101045 101109 130 + . . scaffold148 flankbed promoter 100381 100552 . + . ID=CGI_10008518; scaffold148 WUBlastX LTR_Gypsy 100235 100552 45 + . . scaffold148 flankbed promoter 100381 100492 . + . ID=CGI_10008518; scaffold148 WUBlastX LTR_Gypsy 100286 100492 102 + . . scaffold148 flankbed promoter 100381 100549 . + . ID=CGI_10008518; scaffold148 WUBlastX LTR_Gypsy-Cigr 100295 100549 99 + . . scaffold1480 flankbed promoter 138954 139004 . - . ID=CGI_10008637; scaffold1480 WUBlastX LINE_R2 137673 139004 108 - . . scaffold1480 flankbed promoter 186499 186641 . + . ID=CGI_10008641; scaffold1480 WUBlastX DNA_TcMar-Tc1 185850 186641 377 + . . scaffold1484 flankbed promoter 39696 39720 . - . ID=CGI_10013253; scaffold1484 TRF Tandem_Repeat 39696 39720 50 + . . scaffold1484 flankbed promoter 40353 40363 . - . ID=CGI_10013253; scaffold1484 TRF Tandem_Repeat 40353 40404 95 + . . scaffold1484 flankbed promoter 43635 43678 . + . ID=CGI_10013254; scaffold1484 TRF Tandem_Repeat 43635 43678 88 + . . scaffold1485 flankbed promoter 29569 29778 . - . ID=CGI_10003289; scaffold1485 WUBlastX DNA_hAT 29569 29778 66 + . . scaffold1485 flankbed promoter 29569 29631 . + . ID=CGI_10003290; scaffold1485 WUBlastX DNA_hAT 29569 29778 66 + . . scaffold1485 flankbed promoter 30773 31072 . + . ID=CGI_10003291; scaffold1485 TRF Tandem_Repeat 30773 31072 519 + . . scaffold1485 flankbed promoter 36694 36921 . + . ID=CGI_10003292; scaffold1485 WUBlastX LTR_ERV1 36694 36921 52 + . . scaffold1485 flankbed promoter 48640 49017 . - . ID=CGI_10003293; scaffold1485 WUBlastX LINE_RTE-X 48601 49017 194 - . . scaffold1485 flankbed promoter 49628 49639 . - . ID=CGI_10003293; scaffold1485 TRF Tandem_Repeat 49628 50576 1392 + . . scaffold1485 flankbed promoter 48972 49346 . - . ID=CGI_10003293; scaffold1485 WUBlastX LINE_RTE-X 48972 49346 185 - . . scaffold1485 flankbed promoter 49047 49496 . - . ID=CGI_10003293; scaffold1485 WUBlastX LINE_CR1 49047 49496 41 - . . scaffold1489 flankbed promoter 56919 57008 . - . ID=CGI_10004846; scaffold1489 TRF Tandem_Repeat 56919 57953 1661 + . . scaffold149 flankbed promoter 40515 40551 . - . ID=CGI_10025283; scaffold149 TRF Tandem_Repeat 40515 40551 74 + . . scaffold149 flankbed promoter 51243 51891 . - . ID=CGI_10025285; scaffold149 WUBlastX LINE_RTE-X 51243 52274 128 - . . scaffold149 flankbed promoter 234360 234412 . - . ID=CGI_10025296; scaffold149 TRF Tandem_Repeat 234360 234412 70 + . . scaffold149 flankbed promoter 233882 234265 . - . ID=CGI_10025296; scaffold149 WUBlastX LINE_L2 233780 234265 66 - . . scaffold149 flankbed promoter 233882 234058 . - . ID=CGI_10025296; scaffold149 WUBlastX LINE_RTE-BovB 233753 234058 80 - . . scaffold149 flankbed promoter 233882 234508 . - . ID=CGI_10025296; scaffold149 WUBlastX LINE_L2 233753 234508 43 - . . scaffold149 flankbed promoter 584298 584332 . + . ID=CGI_10025308; scaffold149 TRF Tandem_Repeat 584298 584332 70 + . . scaffold149 flankbed promoter 589774 589880 . + . ID=CGI_10025309; scaffold149 WUBlastX LTR_Ngaro 589647 589880 27 - . . scaffold149 flankbed promoter 632695 632890 . + . ID=CGI_10025313; scaffold149 WUBlastX LINE_L2 632156 632890 112 - . . scaffold149 flankbed promoter 632695 632779 . + . ID=CGI_10025313; scaffold149 WUBlastX LINE_L1 632150 632779 247 - . . scaffold149 flankbed promoter 632695 633058 . + . ID=CGI_10025313; scaffold149 WUBlastX LINE_L1 632174 633058 34 - . . scaffold149 flankbed promoter 635448 635504 . + . ID=CGI_10025314; scaffold149 TRF Tandem_Repeat 635448 635504 114 + . . scaffold149 flankbed promoter 695709 695757 . + . ID=CGI_10025315; scaffold149 TRF Tandem_Repeat 695709 695757 98 + . . scaffold149 flankbed promoter 741807 741880 . + . ID=CGI_10025318; scaffold149 TRF Tandem_Repeat 741807 741880 148 + . . scaffold149 flankbed promoter 781138 781375 . - . ID=CGI_10025321; scaffold149 TRF Tandem_Repeat 781138 781375 296 + . . scaffold149 flankbed promoter 801780 801992 . - . ID=CGI_10025322; scaffold149 TRF Tandem_Repeat 801780 804374 3468 + . . scaffold149 flankbed promoter 851255 851312 . + . ID=CGI_10025326; scaffold149 TRF Tandem_Repeat 851255 851312 109 + . . scaffold149 flankbed promoter 851341 851419 . + . ID=CGI_10025326; scaffold149 TRF Tandem_Repeat 851341 851419 115 + . . scaffold149 flankbed promoter 855497 855555 . + . ID=CGI_10025327; scaffold149 TRF Tandem_Repeat 855497 855555 118 + . . scaffold149 flankbed promoter 885473 885651 . - . ID=CGI_10025329; scaffold149 TRF Tandem_Repeat 885473 885677 356 + . . scaffold149 flankbed promoter 916494 916556 . - . ID=CGI_10025331; scaffold149 TRF Tandem_Repeat 916494 916556 126 + . . scaffold149 flankbed promoter 917568 917644 . + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 917568 917644 77 + . . scaffold149 flankbed promoter 977573 977737 . + . ID=CGI_10025334; scaffold149 WUBlastX LINE_Penelope 977573 977905 39 + . . scaffold149 flankbed promoter 977573 977737 . + . ID=CGI_10025334; scaffold149 WUBlastX LINE_Penelope 977573 977809 44 + . . scaffold1490 flankbed promoter 47232 47286 . - . ID=CGI_10014906; scaffold1490 TRF Tandem_Repeat 47232 47286 74 + . . scaffold1491 flankbed promoter 47423 47695 . - . ID=CGI_10005612; scaffold1491 WUBlastX LTR_Gypsy 47351 47695 52 - . . scaffold1492 flankbed promoter 16939 16993 . - . ID=CGI_10012067; scaffold1492 TRF Tandem_Repeat 16939 16993 110 + . . scaffold1492 flankbed promoter 15959 16001 . + . ID=CGI_10012068; scaffold1492 TRF Tandem_Repeat 15959 16001 86 + . . scaffold1498 flankbed promoter 83194 83250 . + . ID=CGI_10004758; scaffold1498 TRF Tandem_Repeat 83194 83250 114 + . . scaffold150 flankbed promoter 237995 238162 . - . ID=CGI_10028592; scaffold150 WUBlastX DNA_PiggyBac 237995 238162 50 + . . scaffold150 flankbed promoter 358986 359054 . + . ID=CGI_10028601; scaffold150 TRF Tandem_Repeat 358986 359054 138 + . . scaffold150 flankbed promoter 364304 364347 . + . ID=CGI_10028602; scaffold150 TRF Tandem_Repeat 364304 364347 88 + . . scaffold150 flankbed promoter 370636 370648 . + . ID=CGI_10028604; scaffold150 TRF Tandem_Repeat 370612 370648 65 + . . scaffold150 flankbed promoter 396164 396421 . - . ID=CGI_10028606; scaffold150 WUBlastX DNA_Harbinger 396164 396421 87 - . . scaffold150 flankbed promoter 396060 396215 . - . ID=CGI_10028606; scaffold150 WUBlastX DNA_Harbinger 396060 396215 90 - . . scaffold150 flankbed promoter 407152 407152 . - . ID=CGI_10028607; scaffold150 TRF Tandem_Repeat 407152 407184 66 + . . scaffold150 flankbed promoter 525519 525584 . + . ID=CGI_10028612; scaffold150 TRF Tandem_Repeat 525519 525584 64 + . . scaffold150 flankbed promoter 541312 541890 . - . ID=CGI_10028614; scaffold150 WUBlastX LINE_L1 541312 541890 141 + . . scaffold150 flankbed promoter 541072 541869 . - . ID=CGI_10028614; scaffold150 WUBlastX LINE_L1 541072 541869 89 + . . scaffold150 flankbed promoter 541429 541966 . - . ID=CGI_10028614; scaffold150 WUBlastX LINE_L1-Tx1 541429 542043 286 + . . scaffold150 flankbed promoter 938993 939032 . + . ID=CGI_10028632; scaffold150 TRF Tandem_Repeat 938993 939032 80 + . . scaffold150 flankbed promoter 1094956 1094982 . - . ID=CGI_10028650; scaffold150 TRF Tandem_Repeat 1094956 1094982 54 + . . scaffold150 flankbed promoter 1169617 1170593 . + . ID=CGI_10028655; scaffold150 TRF Tandem_Repeat 1169590 1170593 1316 + . . scaffold150 flankbed promoter 1170125 1170580 . + . ID=CGI_10028655; scaffold150 TRF Tandem_Repeat 1170125 1170580 597 + . . scaffold150 flankbed promoter 1169617 1170593 . + . ID=CGI_10028655; scaffold150 TRF Tandem_Repeat 1169590 1170593 1430 + . . scaffold150 flankbed promoter 1228017 1228051 . + . ID=CGI_10028664; scaffold150 TRF Tandem_Repeat 1228017 1228051 70 + . . scaffold150 flankbed promoter 1274685 1274725 . + . ID=CGI_10028669; scaffold150 TRF Tandem_Repeat 1274685 1274725 55 + . . scaffold150 flankbed promoter 1274689 1274740 . + . ID=CGI_10028669; scaffold150 TRF Tandem_Repeat 1274689 1274740 58 + . . scaffold150 flankbed promoter 1377910 1378197 . - . ID=CGI_10028678; scaffold150 TRF Tandem_Repeat 1377910 1378197 324 + . . scaffold150 flankbed promoter 1377910 1378197 . - . ID=CGI_10028678; scaffold150 TRF Tandem_Repeat 1377910 1378197 366 + . . scaffold150 flankbed promoter 1401868 1401961 . + . ID=CGI_10028680; scaffold150 TRF Tandem_Repeat 1401868 1401961 134 + . . scaffold150 flankbed promoter 1413621 1413824 . + . ID=CGI_10028682; scaffold150 WUBlastX LINE_RTE-X 1413540 1413824 49 - . . scaffold1500 flankbed promoter 48749 48916 . + . ID=CGI_10007896; scaffold1500 WUBlastX DNA_Crypton 48596 48916 75 - . . scaffold1500 flankbed promoter 143601 143693 . - . ID=CGI_10007899; scaffold1500 WUBlastX DNA_Harbinger 143601 143693 35 + . . scaffold1500 flankbed promoter 144525 144531 . - . ID=CGI_10007899; scaffold1500 WUBlastX DNA_Harbinger 144525 144671 21 + . . scaffold1500 flankbed promoter 143580 143660 . - . ID=CGI_10007899; scaffold1500 WUBlastX DNA_Harbinger 143580 143660 45 + . . scaffold1500 flankbed promoter 143601 143672 . - . ID=CGI_10007899; scaffold1500 WUBlastX DNA_Harbinger 143601 143672 39 + . . scaffold1500 flankbed promoter 143532 143660 . - . ID=CGI_10007899; scaffold1500 WUBlastX DNA_Harbinger 143532 143660 29 + . . scaffold1500 flankbed promoter 188525 188618 . - . ID=CGI_10007900; scaffold1500 TRF Tandem_Repeat 188525 188618 91 + . . scaffold1500 flankbed promoter 188693 188784 . - . ID=CGI_10007900; scaffold1500 TRF Tandem_Repeat 188693 188784 150 + . . scaffold1500 flankbed promoter 188861 189002 . - . ID=CGI_10007900; scaffold1500 TRF Tandem_Repeat 188861 189002 133 + . . scaffold1500 flankbed promoter 188861 189002 . + . ID=CGI_10007901; scaffold1500 TRF Tandem_Repeat 188861 189002 133 + . . scaffold1500 flankbed promoter 189185 189278 . + . ID=CGI_10007901; scaffold1500 TRF Tandem_Repeat 189185 189278 136 + . . scaffold1503 flankbed promoter 72300 72343 . - . ID=CGI_10009529; scaffold1503 TRF Tandem_Repeat 72300 72343 79 + . . scaffold1509 flankbed promoter 36717 36764 . - . ID=CGI_10007240; scaffold1509 TRF Tandem_Repeat 36717 36764 96 + . . scaffold1512 flankbed promoter 9703 10596 . - . ID=CGI_10019849; scaffold1512 WUBlastX LTR_Gypsy 9703 10974 582 - . . scaffold1512 flankbed promoter 9910 10596 . - . ID=CGI_10019849; scaffold1512 WUBlastX LTR_Gypsy 9910 12198 1620 - . . scaffold1512 flankbed promoter 113479 113617 . - . ID=CGI_10019851; scaffold1512 WUBlastX LTR_Gypsy 113479 115356 495 - . . scaffold1512 flankbed promoter 116621 116985 . - . ID=CGI_10019852; scaffold1512 WUBlastX LTR_Gypsy 116621 117196 404 - . . scaffold1512 flankbed promoter 116402 116596 . - . ID=CGI_10019852; scaffold1512 WUBlastX LTR_Gypsy 116402 116596 85 - . . scaffold1512 flankbed promoter 299738 299766 . + . ID=CGI_10019864; scaffold1512 TRF Tandem_Repeat 299738 299766 51 + . . scaffold1512 flankbed promoter 499795 499943 . - . ID=CGI_10019873; scaffold1512 WUBlastX LINE_RTE-BovB 499737 499943 76 + . . scaffold1514 flankbed promoter 41852 41953 . + . ID=CGI_10005308; scaffold1514 TRF Tandem_Repeat 41852 41953 103 + . . scaffold1518 flankbed promoter 75961 76206 . + . ID=CGI_10017789; scaffold1518 WUBlastX LTR_DIRS 75961 76206 129 - . . scaffold1518 flankbed promoter 95608 95798 . + . ID=CGI_10017791; scaffold1518 WUBlastX LINE_RTE-BovB 95565 95798 82 - . . scaffold1518 flankbed promoter 95608 95668 . + . ID=CGI_10017791; scaffold1518 WUBlastX LINE_RTE-BovB 95423 95668 54 - . . scaffold1518 flankbed promoter 95608 95741 . + . ID=CGI_10017791; scaffold1518 WUBlastX LINE_RTE-BovB 95595 95741 82 - . . scaffold1518 flankbed promoter 95619 95738 . + . ID=CGI_10017791; scaffold1518 WUBlastX LINE_RTE-BovB 95619 95738 87 - . . scaffold1518 flankbed promoter 290591 290665 . - . ID=CGI_10017804; scaffold1518 WUBlastX LTR_Gypsy 290591 290665 22 - . . scaffold1518 flankbed promoter 418019 418075 . - . ID=CGI_10017812; scaffold1518 TRF Tandem_Repeat 418019 418075 114 + . . scaffold1518 flankbed promoter 418272 418300 . - . ID=CGI_10017812; scaffold1518 TRF Tandem_Repeat 418272 418300 58 + . . scaffold1518 flankbed promoter 428669 429022 . - . ID=CGI_10017814; scaffold1518 WUBlastX LTR_Ngaro 428669 429022 171 - . . scaffold1518 flankbed promoter 453191 453426 . + . ID=CGI_10017815; scaffold1518 TRF Tandem_Repeat 453191 453426 273 + . . scaffold152 flankbed promoter 75877 76028 . - . ID=CGI_10014894; scaffold152 TRF Tandem_Repeat 75877 76028 162 + . . scaffold152 flankbed promoter 76206 76351 . - . ID=CGI_10014894; scaffold152 WUBlastX LINE_RTE-X 76206 76433 52 + . . scaffold152 flankbed promoter 76257 76351 . - . ID=CGI_10014894; scaffold152 WUBlastX LINE_RTE-X 76257 76436 69 + . . scaffold152 flankbed promoter 361447 361884 . + . ID=CGI_10014901; scaffold152 TRF Tandem_Repeat 359646 361884 2123 + . . scaffold1521 flankbed promoter 9856 9889 . + . ID=CGI_10017929; scaffold1521 TRF Tandem_Repeat 9829 9889 70 + . . scaffold1521 flankbed promoter 365740 365783 . + . ID=CGI_10017949; scaffold1521 TRF Tandem_Repeat 365740 365783 79 + . . scaffold1521 flankbed promoter 385583 385619 . - . ID=CGI_10017950; scaffold1521 TRF Tandem_Repeat 385583 385619 74 + . . scaffold1524 flankbed promoter 4229 4269 . + . ID=CGI_10007397; scaffold1524 TRF Tandem_Repeat 4229 4269 82 + . . scaffold1524 flankbed promoter 57499 57548 . + . ID=CGI_10007401; scaffold1524 TRF Tandem_Repeat 57499 57548 100 + . . scaffold1525 flankbed promoter 219488 219518 . - . ID=CGI_10013863; scaffold1525 TRF Tandem_Repeat 219488 219518 55 + . . scaffold1526 flankbed promoter 52395 52554 . + . ID=CGI_10006184; scaffold1526 TRF Tandem_Repeat 52395 52554 248 + . . scaffold1527 flankbed promoter 161911 162631 . - . ID=CGI_10011614; scaffold1527 TRF Tandem_Repeat 161911 162777 1360 + . . scaffold1528 flankbed promoter 185196 186006 . - . ID=CGI_10013220; scaffold1528 TRF Tandem_Repeat 185196 186548 979 + . . scaffold1528 flankbed promoter 185196 186006 . - . ID=CGI_10013220; scaffold1528 TRF Tandem_Repeat 185196 186530 1149 + . . scaffold1528 flankbed promoter 185207 186006 . - . ID=CGI_10013220; scaffold1528 TRF Tandem_Repeat 185207 186548 1153 + . . scaffold1528 flankbed promoter 267687 267745 . + . ID=CGI_10013227; scaffold1528 TRF Tandem_Repeat 267687 267745 118 + . . scaffold1532 flankbed promoter 178080 178166 . - . ID=CGI_10028236; scaffold1532 WUBlastX DNA_Harbinger 178080 178166 46 - . . scaffold1532 flankbed promoter 178189 178200 . - . ID=CGI_10028236; scaffold1532 WUBlastX DNA_Harbinger 178189 178482 121 - . . scaffold1532 flankbed promoter 274355 274488 . - . ID=CGI_10028242; scaffold1532 TRF Tandem_Repeat 274355 274488 126 + . . scaffold1532 flankbed promoter 331441 331482 . - . ID=CGI_10028245; scaffold1532 WUBlastX LINE_RTE-X 330742 331482 199 - . . scaffold1532 flankbed promoter 382783 382859 . - . ID=CGI_10028248; scaffold1532 TRF Tandem_Repeat 382783 382859 154 + . . scaffold1532 flankbed promoter 382857 382889 . - . ID=CGI_10028248; scaffold1532 TRF Tandem_Repeat 382857 382889 57 + . . scaffold1532 flankbed promoter 582038 582110 . + . ID=CGI_10028258; scaffold1532 TRF Tandem_Repeat 582038 582110 146 + . . scaffold1532 flankbed promoter 603170 603274 . + . ID=CGI_10028260; scaffold1532 WUBlastX LTR_Pao 603170 603274 64 + . . scaffold1532 flankbed promoter 602430 603133 . + . ID=CGI_10028260; scaffold1532 WUBlastX LTR_Gypsy 601565 603133 399 + . . scaffold1532 flankbed promoter 603137 603283 . + . ID=CGI_10028260; scaffold1532 WUBlastX LTR_Pao 603137 603283 60 + . . scaffold1532 flankbed promoter 602430 602860 . + . ID=CGI_10028260; scaffold1532 WUBlastX LTR_Gypsy 601544 602860 614 + . . scaffold1532 flankbed promoter 633183 633308 . + . ID=CGI_10028262; scaffold1532 TRF Tandem_Repeat 632595 633308 881 + . . scaffold1532 flankbed promoter 637992 638044 . + . ID=CGI_10028264; scaffold1532 TRF Tandem_Repeat 637992 638044 54 + . . scaffold1532 flankbed promoter 649479 650285 . - . ID=CGI_10028265; scaffold1532 TRF Tandem_Repeat 649479 650937 2061 + . . scaffold1532 flankbed promoter 876869 876902 . + . ID=CGI_10028273; scaffold1532 TRF Tandem_Repeat 876869 876902 59 + . . scaffold1532 flankbed promoter 997472 997543 . - . ID=CGI_10028278; scaffold1532 TRF Tandem_Repeat 997472 997543 99 + . . scaffold1532 flankbed promoter 997472 997543 . - . ID=CGI_10028278; scaffold1532 TRF Tandem_Repeat 997472 997543 99 + . . scaffold1532 flankbed promoter 997472 997543 . - . ID=CGI_10028278; scaffold1532 TRF Tandem_Repeat 997472 997543 99 + . . scaffold1532 flankbed promoter 1062782 1063678 . - . ID=CGI_10028279; scaffold1532 WUBlastX LTR_Ngaro 1062782 1063678 233 - . . scaffold1532 flankbed promoter 1062782 1063405 . - . ID=CGI_10028279; scaffold1532 WUBlastX LTR_Ngaro 1062782 1063405 246 - . . scaffold1532 flankbed promoter 1062689 1063267 . - . ID=CGI_10028279; scaffold1532 WUBlastX LTR_DIRS 1062647 1063267 26 - . . scaffold1532 flankbed promoter 1112502 1112564 . - . ID=CGI_10028281; scaffold1532 WUBlastX LTR_Gypsy 1112145 1112564 81 - . . scaffold1532 flankbed promoter 1396714 1396740 . - . ID=CGI_10028290; scaffold1532 TRF Tandem_Repeat 1396714 1396740 54 + . . scaffold1532 flankbed promoter 1409433 1409471 . - . ID=CGI_10028292; scaffold1532 TRF Tandem_Repeat 1409433 1409471 78 + . . scaffold1532 flankbed promoter 1409433 1409471 . + . ID=CGI_10028293; scaffold1532 TRF Tandem_Repeat 1409433 1409471 78 + . . scaffold1533 flankbed promoter 147258 147380 . - . ID=CGI_10012870; scaffold1533 TRF Tandem_Repeat 147258 147380 76 + . . scaffold1533 flankbed promoter 171511 171546 . - . ID=CGI_10012873; scaffold1533 TRF Tandem_Repeat 171511 171546 54 + . . scaffold1535 flankbed promoter 70200 70289 . - . ID=CGI_10005842; scaffold1535 WUBlastX DNA_Harbinger 70200 70847 146 - . . scaffold1535 flankbed promoter 70200 70289 . - . ID=CGI_10005842; scaffold1535 WUBlastX DNA_Harbinger 70200 71009 103 - . . scaffold1535 flankbed promoter 102790 102912 . - . ID=CGI_10005845; scaffold1535 WUBlastX DNA_Maverick 102790 103062 132 - . . scaffold1535 flankbed promoter 102793 102912 . - . ID=CGI_10005845; scaffold1535 WUBlastX DNA_Maverick 102793 103242 107 - . . scaffold1535 flankbed promoter 102778 102912 . - . ID=CGI_10005845; scaffold1535 WUBlastX DNA_Maverick 102778 103146 107 - . . scaffold1535 flankbed promoter 103391 103425 . - . ID=CGI_10005846; scaffold1535 WUBlastX DNA_Maverick 103391 103753 76 - . . scaffold1535 flankbed promoter 102790 103062 . - . ID=CGI_10005846; scaffold1535 WUBlastX DNA_Maverick 102790 103062 132 - . . scaffold1535 flankbed promoter 102793 103242 . - . ID=CGI_10005846; scaffold1535 WUBlastX DNA_Maverick 102793 103242 107 - . . scaffold1535 flankbed promoter 103295 103425 . - . ID=CGI_10005846; scaffold1535 WUBlastX DNA_Maverick 103295 103717 72 - . . scaffold1535 flankbed promoter 102778 103146 . - . ID=CGI_10005846; scaffold1535 WUBlastX DNA_Maverick 102778 103146 107 - . . scaffold1541 flankbed promoter 205490 205822 . + . ID=CGI_10017889; scaffold1541 TRF Tandem_Repeat 205490 205822 330 + . . scaffold1541 flankbed promoter 205492 205735 . + . ID=CGI_10017889; scaffold1541 TRF Tandem_Repeat 205492 205735 245 + . . scaffold1541 flankbed promoter 280988 281054 . + . ID=CGI_10017891; scaffold1541 TRF Tandem_Repeat 280988 281054 89 + . . scaffold1541 flankbed promoter 292479 292574 . + . ID=CGI_10017892; scaffold1541 TRF Tandem_Repeat 292479 292574 151 + . . scaffold1541 flankbed promoter 456958 457617 . + . ID=CGI_10017900; scaffold1541 WUBlastX LINE_CR1 456958 457617 224 + . . scaffold1541 flankbed promoter 468948 469052 . + . ID=CGI_10017901; scaffold1541 WUBlastX DNA_hAT 468735 469052 109 + . . scaffold1541 flankbed promoter 469188 469505 . + . ID=CGI_10017901; scaffold1541 WUBlastX DNA_hAT 469188 469505 109 + . . scaffold1546 flankbed promoter 80335 80550 . + . ID=CGI_10010752; scaffold1546 TRF Tandem_Repeat 80335 80550 380 + . . scaffold1546 flankbed promoter 182209 182220 . + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 182209 182379 26 + . . scaffold1551 flankbed promoter 47041 47323 . + . ID=CGI_10011471; scaffold1551 WUBlastX LINE_RTE-BovB 46646 47323 508 - . . scaffold1551 flankbed promoter 47041 47560 . + . ID=CGI_10011471; scaffold1551 WUBlastX LINE_L1 46658 47560 83 - . . scaffold1551 flankbed promoter 110282 110447 . + . ID=CGI_10011473; scaffold1551 WUBlastX LTR_Gypsy 109236 110447 219 + . . scaffold1551 flankbed promoter 110361 110732 . + . ID=CGI_10011473; scaffold1551 WUBlastX LTR_Copia 110361 110732 37 + . . scaffold1551 flankbed promoter 110282 110672 . + . ID=CGI_10011473; scaffold1551 WUBlastX LTR_Gypsy 109320 110672 162 + . . scaffold1551 flankbed promoter 130072 130142 . + . ID=CGI_10011475; scaffold1551 WUBlastX LINE_RTE-BovB 130056 130142 26 - . . scaffold1553 flankbed promoter 2198 3191 . + . ID=CGI_10005358; scaffold1553 TRF Tandem_Repeat 1128 3191 251 + . . scaffold1553 flankbed promoter 2198 2242 . + . ID=CGI_10005358; scaffold1553 TRF Tandem_Repeat 1966 2242 127 + . . scaffold1553 flankbed promoter 2270 2406 . + . ID=CGI_10005358; scaffold1553 TRF Tandem_Repeat 2270 2406 87 + . . scaffold1553 flankbed promoter 2308 2531 . + . ID=CGI_10005358; scaffold1553 TRF Tandem_Repeat 2308 2531 167 + . . scaffold1553 flankbed promoter 2347 2533 . + . ID=CGI_10005358; scaffold1553 TRF Tandem_Repeat 2347 2533 95 + . . scaffold1553 flankbed promoter 2678 3193 . + . ID=CGI_10005358; scaffold1553 TRF Tandem_Repeat 2678 3193 223 + . . scaffold1553 flankbed promoter 31177 31244 . - . ID=CGI_10005359; scaffold1553 TRF Tandem_Repeat 31177 31244 136 + . . scaffold1554 flankbed promoter 84666 84868 . - . ID=CGI_10017358; scaffold1554 WUBlastX LINE_L2 84623 84868 34 - . . scaffold1554 flankbed promoter 84939 85151 . - . ID=CGI_10017358; scaffold1554 WUBlastX LINE_L2 84939 85151 28 - . . scaffold1554 flankbed promoter 84939 85022 . - . ID=CGI_10017358; scaffold1554 WUBlastX LINE_CR1-L2 84939 85022 55 - . . scaffold1554 flankbed promoter 84939 85043 . - . ID=CGI_10017358; scaffold1554 WUBlastX LINE_L2 84939 85043 51 - . . scaffold1554 flankbed promoter 84666 84949 . - . ID=CGI_10017358; scaffold1554 WUBlastX LINE_L2 84557 84949 22 - . . scaffold1554 flankbed promoter 155976 156005 . - . ID=CGI_10017364; scaffold1554 TRF Tandem_Repeat 155976 156005 51 + . . scaffold1554 flankbed promoter 165691 165734 . - . ID=CGI_10017365; scaffold1554 TRF Tandem_Repeat 165691 165734 88 + . . scaffold1554 flankbed promoter 341595 341695 . - . ID=CGI_10017369; scaffold1554 TRF Tandem_Repeat 341595 341695 75 + . . scaffold1554 flankbed promoter 341606 341695 . - . ID=CGI_10017369; scaffold1554 TRF Tandem_Repeat 341606 341695 108 + . . scaffold1554 flankbed promoter 486084 486398 . + . ID=CGI_10017376; scaffold1554 WUBlastX LINE_L2 486084 486398 63 + . . scaffold1554 flankbed promoter 486039 486419 . + . ID=CGI_10017376; scaffold1554 WUBlastX LINE_L1 486039 486419 61 + . . scaffold1554 flankbed promoter 486123 486359 . + . ID=CGI_10017376; scaffold1554 WUBlastX LINE_L2 486123 486359 68 + . . scaffold1556 flankbed promoter 101369 101746 . + . ID=CGI_10010474; scaffold1556 WUBlastX LINE_RTE-X 101369 101746 53 - . . scaffold1556 flankbed promoter 218185 218260 . - . ID=CGI_10010476; scaffold1556 TRF Tandem_Repeat 218185 218313 77 + . . scaffold1556 flankbed promoter 252099 252685 . + . ID=CGI_10010477; scaffold1556 WUBlastX LINE_L1-Tx1 251537 252685 413 - . . scaffold1558 flankbed promoter 1936 1969 . + . ID=CGI_10004092; scaffold1558 TRF Tandem_Repeat 1936 1969 68 + . . scaffold1558 flankbed promoter 74025 74471 . - . ID=CGI_10004094; scaffold1558 WUBlastX DNA_Crypton 74025 74471 110 + . . scaffold156 flankbed promoter 430 683 . + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 430 683 127 + . . scaffold156 flankbed promoter 447 723 . + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 447 723 176 + . . scaffold156 flankbed promoter 424 725 . + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 424 725 206 + . . scaffold156 flankbed promoter 501 727 . + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 501 727 157 + . . scaffold156 flankbed promoter 328012 328179 . - . ID=CGI_10026495; scaffold156 WUBlastX LINE_RTE-X 328012 328179 51 - . . scaffold156 flankbed promoter 328012 328224 . - . ID=CGI_10026495; scaffold156 WUBlastX LINE_RTE-X 328012 328224 33 - . . scaffold156 flankbed promoter 327888 328073 . - . ID=CGI_10026495; scaffold156 WUBlastX LINE_RTE-X 327888 328073 56 - . . scaffold156 flankbed promoter 363461 363967 . - . ID=CGI_10026498; scaffold156 WUBlastX LINE_Penelope 363461 363967 42 + . . scaffold156 flankbed promoter 468758 469089 . + . ID=CGI_10026503; scaffold156 WUBlastX LINE_RTE-X 468466 469089 162 - . . scaffold156 flankbed promoter 530789 531628 . + . ID=CGI_10026507; scaffold156 WUBlastX LINE_CR1 530090 531628 45 - . . scaffold156 flankbed promoter 530789 531274 . + . ID=CGI_10026507; scaffold156 WUBlastX LINE_RTE-X 529286 531274 897 - . . scaffold156 flankbed promoter 901907 902527 . + . ID=CGI_10026532; scaffold156 WUBlastX LINE_CR1 901907 902527 218 + . . scaffold156 flankbed promoter 902003 902527 . + . ID=CGI_10026532; scaffold156 WUBlastX LINE_CR1 902003 902527 343 + . . scaffold156 flankbed promoter 901876 902407 . + . ID=CGI_10026532; scaffold156 WUBlastX LINE_CR1 901733 902407 27 + . . scaffold1560 flankbed promoter 160487 160530 . - . ID=CGI_10009795; scaffold1560 TRF Tandem_Repeat 160487 160551 130 + . . scaffold1560 flankbed promoter 240711 240833 . + . ID=CGI_10009802; scaffold1560 WUBlastX LINE_I 240711 241130 39 + . . scaffold1560 flankbed promoter 240406 240738 . + . ID=CGI_10009802; scaffold1560 WUBlastX LINE_CR1 240406 240738 95 + . . scaffold1561 flankbed promoter 40973 41366 . - . ID=CGI_10005690; scaffold1561 WUBlastX LINE_CR1 40973 41743 192 + . . scaffold1561 flankbed promoter 40904 41366 . - . ID=CGI_10005690; scaffold1561 WUBlastX LINE_CR1-L2 40904 41437 402 + . . scaffold1561 flankbed promoter 40973 41366 . - . ID=CGI_10005690; scaffold1561 WUBlastX LINE_CR1 40973 41545 248 + . . scaffold1564 flankbed promoter 69486 69551 . - . ID=CGI_10005197; scaffold1564 TRF Tandem_Repeat 69486 69551 132 + . . scaffold1567 flankbed promoter 17766 17806 . - . ID=CGI_10005156; scaffold1567 TRF Tandem_Repeat 17766 17806 82 + . . scaffold157 flankbed promoter 949 969 . + . ID=CGI_10021220; scaffold157 TRF Tandem_Repeat 914 969 112 + . . scaffold157 flankbed promoter 62008 62108 . - . ID=CGI_10021223; scaffold157 TRF Tandem_Repeat 62008 62108 73 + . . scaffold157 flankbed promoter 247337 247505 . - . ID=CGI_10021238; scaffold157 TRF Tandem_Repeat 247337 247505 293 + . . scaffold157 flankbed promoter 376840 376949 . + . ID=CGI_10021249; scaffold157 TRF Tandem_Repeat 376840 376949 121 + . . scaffold157 flankbed promoter 509451 509497 . + . ID=CGI_10021263; scaffold157 TRF Tandem_Repeat 509451 509497 78 + . . scaffold1570 flankbed promoter 34181 34750 . + . ID=CGI_10002601; scaffold1570 WUBlastX LTR_Gypsy-Cigr 33215 34750 533 + . . scaffold1570 flankbed promoter 34625 34780 . + . ID=CGI_10002601; scaffold1570 WUBlastX LTR_Pao 34625 34780 49 + . . scaffold1570 flankbed promoter 34181 34504 . + . ID=CGI_10002601; scaffold1570 WUBlastX LTR_Gypsy-Cigr 30875 34504 1422 + . . scaffold1571 flankbed promoter 226130 226157 . + . ID=CGI_10012172; scaffold1571 TRF Tandem_Repeat 226130 226157 56 + . . scaffold1572 flankbed promoter 162289 162607 . - . ID=CGI_10007823; scaffold1572 TRF Tandem_Repeat 162289 162979 510 + . . scaffold1572 flankbed promoter 162273 162607 . - . ID=CGI_10007823; scaffold1572 TRF Tandem_Repeat 162273 162960 492 + . . scaffold1572 flankbed promoter 162273 162607 . - . ID=CGI_10007823; scaffold1572 TRF Tandem_Repeat 162273 162994 611 + . . scaffold1574 flankbed promoter 113013 113015 . - . ID=CGI_10016322; scaffold1574 WUBlastX LINE_RTE-X 112587 113015 68 - . . scaffold1574 flankbed promoter 352600 352774 . - . ID=CGI_10016329; scaffold1574 TRF Tandem_Repeat 352600 352774 158 + . . scaffold1574 flankbed promoter 352810 352979 . - . ID=CGI_10016329; scaffold1574 TRF Tandem_Repeat 352810 352979 205 + . . scaffold1575 flankbed promoter 72929 73004 . + . ID=CGI_10004721; scaffold1575 WUBlastX LTR_Gypsy 72684 73004 91 + . . scaffold1575 flankbed promoter 72929 72935 . + . ID=CGI_10004721; scaffold1575 WUBlastX LTR_Gypsy 72675 72935 163 + . . scaffold1576 flankbed promoter 94089 94760 . + . ID=CGI_10004470; scaffold1576 WUBlastX LINE_CR1 94089 94760 196 + . . scaffold1577 flankbed promoter 50774 50816 . + . ID=CGI_10002925; scaffold1577 TRF Tandem_Repeat 50774 50816 52 + . . scaffold1577 flankbed promoter 50771 50808 . + . ID=CGI_10002925; scaffold1577 TRF Tandem_Repeat 50771 50808 67 + . . scaffold1578 flankbed promoter 107271 107357 . + . ID=CGI_10008163; scaffold1578 WUBlastX LINE_L2 107271 107519 78 + . . scaffold1578 flankbed promoter 178977 179377 . + . ID=CGI_10008166; scaffold1578 TRF Tandem_Repeat 178968 179377 450 + . . scaffold1579 flankbed promoter 10895 10981 . - . ID=CGI_10016845; scaffold1579 TRF Tandem_Repeat 10895 10981 95 + . . scaffold1579 flankbed promoter 213880 214004 . - . ID=CGI_10016862; scaffold1579 TRF Tandem_Repeat 213880 214004 89 + . . scaffold1579 flankbed promoter 213880 214010 . - . ID=CGI_10016862; scaffold1579 TRF Tandem_Repeat 213880 214010 74 + . . scaffold1579 flankbed promoter 332501 332579 . + . ID=CGI_10016870; scaffold1579 TRF Tandem_Repeat 332501 332579 158 + . . scaffold1579 flankbed promoter 392656 392722 . - . ID=CGI_10016874; scaffold1579 TRF Tandem_Repeat 392656 392722 125 + . . scaffold1579 flankbed promoter 401272 401371 . + . ID=CGI_10016876; scaffold1579 TRF Tandem_Repeat 401272 401371 155 + . . scaffold1581 flankbed promoter 15229 15242 . + . ID=CGI_10005309; scaffold1581 WUBlastX LINE_R2 15135 15242 22 + . . scaffold1581 flankbed promoter 103916 103960 . + . ID=CGI_10005315; scaffold1581 TRF Tandem_Repeat 103916 103960 90 + . . scaffold1583 flankbed promoter 325337 325420 . - . ID=CGI_10025823; scaffold1583 TRF Tandem_Repeat 325337 325420 69 + . . scaffold1583 flankbed promoter 330184 330220 . - . ID=CGI_10025824; scaffold1583 WUBlastX LINE_RTE-X 330184 330501 126 + . . scaffold1583 flankbed promoter 330196 330220 . - . ID=CGI_10025824; scaffold1583 WUBlastX LINE_RTE-X 330196 330585 99 + . . scaffold1583 flankbed promoter 331118 331175 . + . ID=CGI_10025826; scaffold1583 WUBlastX LINE_RTE-X 330696 331175 86 + . . scaffold1583 flankbed promoter 700623 700692 . - . ID=CGI_10025837; scaffold1583 TRF Tandem_Repeat 700623 700692 106 + . . scaffold1583 flankbed promoter 822615 822686 . - . ID=CGI_10025843; scaffold1583 WUBlastX LTR_Gypsy 821820 822686 38 - . . scaffold1583 flankbed promoter 871926 871991 . - . ID=CGI_10025848; scaffold1583 TRF Tandem_Repeat 871926 871991 114 + . . scaffold1584 flankbed promoter 110627 110672 . - . ID=CGI_10015075; scaffold1584 TRF Tandem_Repeat 110627 110672 92 + . . scaffold1584 flankbed promoter 110627 110672 . + . ID=CGI_10015076; scaffold1584 TRF Tandem_Repeat 110627 110672 92 + . . scaffold1585 flankbed promoter 75470 75497 . - . ID=CGI_10012588; scaffold1585 TRF Tandem_Repeat 75470 75497 56 + . . scaffold1585 flankbed promoter 209963 210951 . - . ID=CGI_10012596; scaffold1585 TRF Tandem_Repeat 209963 211747 2376 + . . scaffold1585 flankbed promoter 322684 322725 . - . ID=CGI_10012599; scaffold1585 TRF Tandem_Repeat 322684 322725 84 + . . scaffold1588 flankbed promoter 117836 117896 . - . ID=CGI_10014772; scaffold1588 TRF Tandem_Repeat 117836 117896 79 + . . scaffold1588 flankbed promoter 117836 117897 . - . ID=CGI_10014772; scaffold1588 TRF Tandem_Repeat 117836 117897 63 + . . scaffold1588 flankbed promoter 189525 189695 . + . ID=CGI_10014776; scaffold1588 WUBlastX DNA_TcMar-Tc1 188667 189695 454 + . . scaffold1588 flankbed promoter 269399 269513 . + . ID=CGI_10014787; scaffold1588 TRF Tandem_Repeat 269399 269513 151 + . . scaffold1588 flankbed promoter 303250 304137 . - . ID=CGI_10014788; scaffold1588 WUBlastX LTR_Gypsy 303250 304137 56 - . . scaffold1588 flankbed promoter 303673 304150 . - . ID=CGI_10014788; scaffold1588 WUBlastX LTR_Gypsy 303673 306693 1802 - . . scaffold1588 flankbed promoter 303511 304150 . - . ID=CGI_10014788; scaffold1588 WUBlastX LTR_Gypsy 303511 304158 161 - . . scaffold1589 flankbed promoter 15138 15172 . - . ID=CGI_10024103; scaffold1589 TRF Tandem_Repeat 15138 15172 70 + . . scaffold1589 flankbed promoter 15437 15485 . - . ID=CGI_10024103; scaffold1589 TRF Tandem_Repeat 15437 15485 75 + . . scaffold1589 flankbed promoter 490535 490600 . - . ID=CGI_10024118; scaffold1589 TRF Tandem_Repeat 490535 490600 105 + . . scaffold1589 flankbed promoter 490645 490710 . - . ID=CGI_10024118; scaffold1589 TRF Tandem_Repeat 490645 490710 114 + . . scaffold1589 flankbed promoter 490755 490814 . - . ID=CGI_10024118; scaffold1589 TRF Tandem_Repeat 490755 490814 120 + . . scaffold1589 flankbed promoter 491178 491213 . - . ID=CGI_10024118; scaffold1589 TRF Tandem_Repeat 491178 491213 63 + . . scaffold1589 flankbed promoter 638239 638321 . - . ID=CGI_10024125; scaffold1589 TRF Tandem_Repeat 638239 638321 62 + . . scaffold1590 flankbed promoter 128047 128274 . - . ID=CGI_10005511; scaffold1590 WUBlastX LINE_Penelope 128047 128274 44 + . . scaffold1592 flankbed promoter 80178 80252 . - . ID=CGI_10006587; scaffold1592 TRF Tandem_Repeat 80178 80252 51 + . . scaffold1592 flankbed promoter 80178 80256 . - . ID=CGI_10006587; scaffold1592 TRF Tandem_Repeat 80178 80256 63 + . . scaffold1593 flankbed promoter 11087 11148 . + . ID=CGI_10002613; scaffold1593 WUBlastX LINE_L1 11083 11148 35 - . . scaffold1597 flankbed promoter 81124 81167 . + . ID=CGI_10011770; scaffold1597 TRF Tandem_Repeat 81124 81167 81 + . . scaffold1597 flankbed promoter 120634 120999 . - . ID=CGI_10011771; scaffold1597 WUBlastX DNA_En-Spm 120634 121194 202 + . . scaffold1597 flankbed promoter 120385 120999 . - . ID=CGI_10011771; scaffold1597 WUBlastX DNA_En-Spm 120385 121149 142 + . . scaffold1597 flankbed promoter 120319 120594 . - . ID=CGI_10011771; scaffold1597 WUBlastX DNA_En-Spm 120319 120594 76 + . . scaffold1599 flankbed promoter 250630 250736 . - . ID=CGI_10027143; scaffold1599 TRF Tandem_Repeat 250630 250736 142 + . . scaffold1599 flankbed promoter 305048 305217 . - . ID=CGI_10027145; scaffold1599 TRF Tandem_Repeat 305048 305217 250 + . . scaffold1599 flankbed promoter 591994 592710 . + . ID=CGI_10027153; scaffold1599 WUBlastX LINE_CR1 591994 592710 193 + . . scaffold1599 flankbed promoter 937879 937927 . - . ID=CGI_10027169; scaffold1599 TRF Tandem_Repeat 937879 937927 98 + . . scaffold1599 flankbed promoter 1068508 1068722 . + . ID=CGI_10027174; scaffold1599 TRF Tandem_Repeat 1068508 1068722 191 + . . scaffold1599 flankbed promoter 1145330 1145360 . + . ID=CGI_10027182; scaffold1599 TRF Tandem_Repeat 1145330 1145360 53 + . . scaffold1599 flankbed promoter 1164491 1164526 . + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1164491 1164526 72 + . . scaffold160 flankbed promoter 92267 92317 . - . ID=CGI_10020573; scaffold160 TRF Tandem_Repeat 92267 92317 102 + . . scaffold160 flankbed promoter 116878 116925 . - . ID=CGI_10020576; scaffold160 TRF Tandem_Repeat 116878 116925 89 + . . scaffold160 flankbed promoter 320819 321091 . - . ID=CGI_10020588; scaffold160 WUBlastX LTR_Pao 320819 321091 27 - . . scaffold160 flankbed promoter 325108 325155 . - . ID=CGI_10020589; scaffold160 TRF Tandem_Repeat 325108 325155 96 + . . scaffold160 flankbed promoter 325108 325155 . + . ID=CGI_10020590; scaffold160 TRF Tandem_Repeat 325108 325155 96 + . . scaffold1601 flankbed promoter 8638 8828 . + . ID=CGI_10010239; scaffold1601 WUBlastX LINE_L1-Tx1 8043 8828 114 - . . scaffold1601 flankbed promoter 8638 8696 . + . ID=CGI_10010239; scaffold1601 WUBlastX LINE_L1 8046 8696 196 - . . scaffold1601 flankbed promoter 8638 8909 . + . ID=CGI_10010239; scaffold1601 WUBlastX LTR_ERV1 8448 8909 55 - . . scaffold1601 flankbed promoter 60991 61422 . - . ID=CGI_10010242; scaffold1601 TRF Tandem_Repeat 60991 61422 163 + . . scaffold1605 flankbed promoter 15167 15211 . - . ID=CGI_10023341; scaffold1605 TRF Tandem_Repeat 15167 15211 90 + . . scaffold1605 flankbed promoter 598340 598666 . - . ID=CGI_10023377; scaffold1605 WUBlastX LINE_L1-Tx1 598340 598666 118 + . . scaffold1605 flankbed promoter 682772 682833 . + . ID=CGI_10023386; scaffold1605 TRF Tandem_Repeat 682772 682833 108 + . . scaffold1608 flankbed promoter 14081 14107 . - . ID=CGI_10010666; scaffold1608 TRF Tandem_Repeat 14081 14107 54 + . . scaffold1608 flankbed promoter 93770 93803 . - . ID=CGI_10010677; scaffold1608 TRF Tandem_Repeat 93770 93803 68 + . . scaffold161 flankbed promoter 105225 105821 . - . ID=CGI_10008587; scaffold161 TRF Tandem_Repeat 105225 105951 1202 + . . scaffold161 flankbed promoter 105688 105951 . + . ID=CGI_10008589; scaffold161 TRF Tandem_Repeat 105225 105951 1202 + . . scaffold1610 flankbed promoter 36590 36603 . + . ID=CGI_10016491; scaffold1610 TRF Tandem_Repeat 36571 36603 66 + . . scaffold1610 flankbed promoter 63007 63055 . - . ID=CGI_10016492; scaffold1610 TRF Tandem_Repeat 63007 63055 80 + . . scaffold1610 flankbed promoter 62090 62123 . + . ID=CGI_10016493; scaffold1610 TRF Tandem_Repeat 62063 62123 50 + . . scaffold1610 flankbed promoter 63007 63055 . + . ID=CGI_10016493; scaffold1610 TRF Tandem_Repeat 63007 63055 80 + . . scaffold1610 flankbed promoter 108875 108902 . + . ID=CGI_10016494; scaffold1610 TRF Tandem_Repeat 108867 108902 72 + . . scaffold1610 flankbed promoter 268873 268927 . + . ID=CGI_10016505; scaffold1610 TRF Tandem_Repeat 268873 268927 110 + . . scaffold1611 flankbed promoter 35848 35889 . - . ID=CGI_10014323; scaffold1611 TRF Tandem_Repeat 35848 35889 75 + . . scaffold1611 flankbed promoter 52672 53340 . + . ID=CGI_10014324; scaffold1611 WUBlastX DNA_En-Spm 51952 53340 954 + . . scaffold1611 flankbed promoter 178995 179338 . - . ID=CGI_10014327; scaffold1611 TRF Tandem_Repeat 178995 179338 580 + . . scaffold1611 flankbed promoter 296623 296666 . + . ID=CGI_10014332; scaffold1611 TRF Tandem_Repeat 296578 296666 151 + . . scaffold1616 flankbed promoter 45510 45530 . + . ID=CGI_10009075; scaffold1616 TRF Tandem_Repeat 45473 45530 116 + . . scaffold162 flankbed promoter 99561 99596 . - . ID=CGI_10014089; scaffold162 WUBlastX LTR_Gypsy 99561 99596 22 - . . scaffold162 flankbed promoter 100062 100384 . - . ID=CGI_10014089; scaffold162 WUBlastX LTR_Gypsy 100062 100529 62 - . . scaffold162 flankbed promoter 100275 100384 . - . ID=CGI_10014089; scaffold162 WUBlastX LTR_Gypsy 100275 100478 154 - . . scaffold162 flankbed promoter 100227 100384 . - . ID=CGI_10014089; scaffold162 WUBlastX LTR_Gypsy 100227 100451 102 - . . scaffold162 flankbed promoter 310976 311009 . + . ID=CGI_10014097; scaffold162 TRF Tandem_Repeat 310976 311009 68 + . . scaffold1624 flankbed promoter 77674 77706 . + . ID=CGI_10004587; scaffold1624 WUBlastX LTR_Gypsy 77143 77706 70 - . . scaffold1627 flankbed promoter 9443 9549 . + . ID=CGI_10009560; scaffold1627 TRF Tandem_Repeat 9443 9549 74 + . . scaffold1627 flankbed promoter 9444 9550 . + . ID=CGI_10009560; scaffold1627 TRF Tandem_Repeat 9444 9550 89 + . . scaffold1627 flankbed promoter 9451 9559 . + . ID=CGI_10009560; scaffold1627 TRF Tandem_Repeat 9451 9559 107 + . . scaffold163 flankbed promoter 113612 113925 . - . ID=CGI_10018611; scaffold163 WUBlastX LINE_L1-Tx1 113612 116365 1689 + . . scaffold163 flankbed promoter 183751 183809 . - . ID=CGI_10018617; scaffold163 TRF Tandem_Repeat 183751 183809 118 + . . scaffold163 flankbed promoter 183751 183809 . + . ID=CGI_10018618; scaffold163 TRF Tandem_Repeat 183751 183809 118 + . . scaffold163 flankbed promoter 381609 381636 . - . ID=CGI_10018625; scaffold163 TRF Tandem_Repeat 381609 381636 56 + . . scaffold163 flankbed promoter 503725 504093 . - . ID=CGI_10018631; scaffold163 WUBlastX DNA_Harbinger 503725 504093 163 - . . scaffold163 flankbed promoter 503665 504123 . - . ID=CGI_10018631; scaffold163 WUBlastX DNA_Harbinger 503665 504123 103 - . . scaffold163 flankbed promoter 491891 491980 . + . ID=CGI_10018632; scaffold163 WUBlastX LTR_Gypsy-Troyk 491456 491980 168 + . . scaffold163 flankbed promoter 557894 557898 . + . ID=CGI_10018634; scaffold163 TRF Tandem_Repeat 557852 557898 85 + . . scaffold1630 flankbed promoter 52535 52562 . + . ID=CGI_10013418; scaffold1630 TRF Tandem_Repeat 52504 52562 118 + . . scaffold1630 flankbed promoter 52560 52589 . + . ID=CGI_10013418; scaffold1630 TRF Tandem_Repeat 52560 52589 60 + . . scaffold1630 flankbed promoter 113592 113648 . - . ID=CGI_10013423; scaffold1630 TRF Tandem_Repeat 113592 113648 73 + . . scaffold1630 flankbed promoter 312784 312853 . - . ID=CGI_10013427; scaffold1630 TRF Tandem_Repeat 312784 312853 104 + . . scaffold1631 flankbed promoter 173425 173551 . - . ID=CGI_10007204; scaffold1631 TRF Tandem_Repeat 173425 173551 211 + . . scaffold1631 flankbed promoter 173444 173583 . - . ID=CGI_10007204; scaffold1631 TRF Tandem_Repeat 173444 173583 178 + . . scaffold1634 flankbed promoter 81464 81485 . + . ID=CGI_10005152; scaffold1634 WUBlastX LTR_Gypsy 81321 81485 68 + . . scaffold1634 flankbed promoter 88739 88777 . + . ID=CGI_10005153; scaffold1634 WUBlastX LTR_Gypsy 88544 88777 59 + . . scaffold1634 flankbed promoter 88739 88777 . + . ID=CGI_10005153; scaffold1634 WUBlastX LTR_Gypsy 88652 88777 108 + . . scaffold1634 flankbed promoter 88836 89195 . + . ID=CGI_10005153; scaffold1634 WUBlastX LTR_Gypsy 88836 89195 65 + . . scaffold1634 flankbed promoter 88739 88843 . + . ID=CGI_10005153; scaffold1634 WUBlastX LTR_Gypsy 88652 88843 41 + . . scaffold1638 flankbed promoter 109315 109470 . + . ID=CGI_10007423; scaffold1638 WUBlastX LINE_RTE-BovB 109315 109470 65 - . . scaffold1638 flankbed promoter 109318 109443 . + . ID=CGI_10007423; scaffold1638 WUBlastX LINE_RTE-BovB 109318 109443 66 - . . scaffold1638 flankbed promoter 129635 129665 . + . ID=CGI_10007426; scaffold1638 WUBlastX LTR_Gypsy 129138 129665 25 + . . scaffold1639 flankbed promoter 83781 83885 . - . ID=CGI_10005439; scaffold1639 WUBlastX DNA_IS4EU 83460 83885 86 - . . scaffold164 flankbed promoter 55105 55605 . - . ID=CGI_10021845; scaffold164 WUBlastX LTR_Gypsy 55105 55605 98 - . . scaffold164 flankbed promoter 319680 319724 . + . ID=CGI_10021865; scaffold164 TRF Tandem_Repeat 319680 319724 81 + . . scaffold164 flankbed promoter 419505 419552 . - . ID=CGI_10021868; scaffold164 TRF Tandem_Repeat 419505 419552 69 + . . scaffold1641 flankbed promoter 182140 182369 . + . ID=CGI_10012506; scaffold1641 TRF Tandem_Repeat 182140 182369 203 + . . scaffold1641 flankbed promoter 201997 202045 . - . ID=CGI_10012508; scaffold1641 TRF Tandem_Repeat 201997 202045 71 + . . scaffold1641 flankbed promoter 227519 227582 . - . ID=CGI_10012512; scaffold1641 TRF Tandem_Repeat 227519 227582 74 + . . scaffold1643 flankbed promoter 87308 87513 . + . ID=CGI_10008363; scaffold1643 TRF Tandem_Repeat 87300 87513 270 + . . scaffold1646 flankbed promoter 48900 49235 . - . ID=CGI_10007518; scaffold1646 WUBlastX LINE_CR1 48900 49370 56 + . . scaffold1646 flankbed promoter 48724 49235 . - . ID=CGI_10007518; scaffold1646 WUBlastX LINE_CR1 48724 49251 183 + . . scaffold1646 flankbed promoter 154267 154761 . - . ID=CGI_10007522; scaffold1646 WUBlastX LTR_Gypsy-Cigr 154267 154761 117 - . . scaffold1646 flankbed promoter 154614 155162 . - . ID=CGI_10007522; scaffold1646 WUBlastX LTR_ERV1 154614 155540 182 - . . scaffold1646 flankbed promoter 154782 155162 . - . ID=CGI_10007522; scaffold1646 WUBlastX LTR_Gypsy 154782 156005 714 - . . scaffold165 flankbed promoter 29832 29964 . + . ID=CGI_10015308; scaffold165 TRF Tandem_Repeat 29832 29964 124 + . . scaffold165 flankbed promoter 33292 33306 . + . ID=CGI_10015309; scaffold165 WUBlastX LTR_Copia 33292 33720 21 + . . scaffold165 flankbed promoter 136114 136344 . - . ID=CGI_10015317; scaffold165 TRF Tandem_Repeat 136114 136344 356 + . . scaffold165 flankbed promoter 138265 138509 . + . ID=CGI_10015318; scaffold165 TRF Tandem_Repeat 137859 138509 1086 + . . scaffold165 flankbed promoter 175514 175556 . - . ID=CGI_10015321; scaffold165 TRF Tandem_Repeat 175514 175556 86 + . . scaffold165 flankbed promoter 176061 176116 . - . ID=CGI_10015321; scaffold165 TRF Tandem_Repeat 176061 176116 85 + . . scaffold165 flankbed promoter 219975 220027 . - . ID=CGI_10015325; scaffold165 TRF Tandem_Repeat 219975 220027 106 + . . scaffold165 flankbed promoter 265928 265966 . + . ID=CGI_10015329; scaffold165 TRF Tandem_Repeat 265928 265966 60 + . . scaffold165 flankbed promoter 400982 401167 . + . ID=CGI_10015333; scaffold165 WUBlastX LTR_Pao 400982 401167 25 - . . scaffold165 flankbed promoter 401012 401170 . + . ID=CGI_10015333; scaffold165 WUBlastX LTR_Pao 401012 401170 115 - . . scaffold165 flankbed promoter 401170 401688 . + . ID=CGI_10015333; scaffold165 WUBlastX LTR_Pao 401170 401688 516 - . . scaffold165 flankbed promoter 423111 423150 . - . ID=CGI_10015334; scaffold165 TRF Tandem_Repeat 423111 423150 80 + . . scaffold1650 flankbed promoter 31381 31528 . - . ID=CGI_10017769; scaffold1650 WUBlastX DNA_MuDR 31304 31528 112 - . . scaffold1650 flankbed promoter 345323 345373 . + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 345323 345373 102 + . . scaffold1650 flankbed promoter 514735 514771 . - . ID=CGI_10017785; scaffold1650 TRF Tandem_Repeat 514735 514771 74 + . . scaffold1651 flankbed promoter 63699 63804 . + . ID=CGI_10007888; scaffold1651 TRF Tandem_Repeat 63699 63804 167 + . . scaffold1651 flankbed promoter 73961 74479 . + . ID=CGI_10007890; scaffold1651 WUBlastX DNA_Kolobok-IS4 73961 74479 94 - . . scaffold1651 flankbed promoter 114599 114687 . + . ID=CGI_10007894; scaffold1651 TRF Tandem_Repeat 114599 114687 60 + . . scaffold1652 flankbed promoter 286960 286990 . - . ID=CGI_10012395; scaffold1652 TRF Tandem_Repeat 286960 287033 148 + . . scaffold1656 flankbed promoter 74783 74911 . - . ID=CGI_10006142; scaffold1656 WUBlastX LTR_Gypsy-Troyk 74783 76264 75 + . . scaffold1656 flankbed promoter 74818 74911 . - . ID=CGI_10006142; scaffold1656 WUBlastX LTR_Gypsy-Troyk 74818 75384 117 + . . scaffold1656 flankbed promoter 73541 73825 . + . ID=CGI_10006143; scaffold1656 WUBlastX LINE_RTE-BovB 73541 73825 75 + . . scaffold1659 flankbed promoter 3496 3557 . + . ID=CGI_10001326; scaffold1659 TRF Tandem_Repeat 3496 3557 124 + . . scaffold1663 flankbed promoter 208801 208869 . + . ID=CGI_10009867; scaffold1663 TRF Tandem_Repeat 208801 208869 129 + . . scaffold1665 flankbed promoter 194811 194961 . - . ID=CGI_10015205; scaffold1665 TRF Tandem_Repeat 194811 194961 125 + . . scaffold1665 flankbed promoter 194864 195018 . - . ID=CGI_10015205; scaffold1665 TRF Tandem_Repeat 194864 195018 66 + . . scaffold1665 flankbed promoter 354374 354426 . + . ID=CGI_10015212; scaffold1665 TRF Tandem_Repeat 354374 354426 90 + . . scaffold1665 flankbed promoter 395335 395550 . - . ID=CGI_10015214; scaffold1665 WUBlastX LINE_RTE-X 395335 395550 46 - . . scaffold1665 flankbed promoter 395242 395562 . - . ID=CGI_10015214; scaffold1665 WUBlastX LINE_RTE-X 395242 395562 24 - . . scaffold1665 flankbed promoter 395428 395637 . - . ID=CGI_10015214; scaffold1665 WUBlastX LINE_RTE-X 395428 395637 59 - . . scaffold1670 flankbed promoter 124978 125121 . + . ID=CGI_10017601; scaffold1670 WUBlastX LTR_DIRS 124978 125595 121 + . . scaffold1670 flankbed promoter 176218 176257 . - . ID=CGI_10017604; scaffold1670 TRF Tandem_Repeat 176218 176257 57 + . . scaffold1670 flankbed promoter 226549 226629 . - . ID=CGI_10017609; scaffold1670 WUBlastX LTR_Gypsy 226549 226629 26 - . . scaffold1670 flankbed promoter 226567 227365 . - . ID=CGI_10017609; scaffold1670 WUBlastX LTR_Gypsy-Cigr 226567 229578 1632 - . . scaffold1670 flankbed promoter 339303 339560 . + . ID=CGI_10017619; scaffold1670 WUBlastX LINE_RTE-X 339303 339560 66 - . . scaffold1670 flankbed promoter 339342 339560 . + . ID=CGI_10017619; scaffold1670 WUBlastX LINE_RTE-X 339342 339560 90 - . . scaffold1670 flankbed promoter 486854 486882 . + . ID=CGI_10017628; scaffold1670 TRF Tandem_Repeat 486854 486882 58 + . . scaffold1671 flankbed promoter 151089 151171 . - . ID=CGI_10015138; scaffold1671 TRF Tandem_Repeat 151089 151171 166 + . . scaffold1671 flankbed promoter 157782 158402 . - . ID=CGI_10015139; scaffold1671 WUBlastX LINE_L1-Tx1 157782 158402 52 + . . scaffold1671 flankbed promoter 157893 158405 . - . ID=CGI_10015139; scaffold1671 WUBlastX LINE_CR1 157893 158405 95 + . . scaffold1671 flankbed promoter 221442 221537 . - . ID=CGI_10015146; scaffold1671 WUBlastX RC_Helitron 221442 221831 29 + . . scaffold1671 flankbed promoter 231100 231295 . - . ID=CGI_10015148; scaffold1671 TRF Tandem_Repeat 231100 231295 148 + . . scaffold1671 flankbed promoter 231297 231368 . - . ID=CGI_10015148; scaffold1671 TRF Tandem_Repeat 231297 231585 232 + . . scaffold1671 flankbed promoter 231300 231368 . - . ID=CGI_10015148; scaffold1671 TRF Tandem_Repeat 231300 231560 334 + . . scaffold1671 flankbed promoter 234052 234083 . + . ID=CGI_10015149; scaffold1671 TRF Tandem_Repeat 234052 234083 64 + . . scaffold1671 flankbed promoter 387811 387996 . - . ID=CGI_10015157; scaffold1671 WUBlastX DNA_Sola 387394 387996 30 - . . scaffold1671 flankbed promoter 410201 410239 . - . ID=CGI_10015158; scaffold1671 TRF Tandem_Repeat 410201 410239 69 + . . scaffold1672 flankbed promoter 53151 53204 . + . ID=CGI_10004941; scaffold1672 TRF Tandem_Repeat 53151 53204 108 + . . scaffold1672 flankbed promoter 81219 81299 . - . ID=CGI_10004943; scaffold1672 WUBlastX LTR_Gypsy 81219 81452 54 + . . scaffold1672 flankbed promoter 89813 89866 . - . ID=CGI_10004945; scaffold1672 TRF Tandem_Repeat 89813 89866 51 + . . scaffold1673 flankbed promoter 58633 58872 . + . ID=CGI_10013571; scaffold1673 WUBlastX DNA_TcMar-Marin 58633 58872 82 + . . scaffold1678 flankbed promoter 1 37 . + . ID=CGI_10010377; scaffold1678 TRF Tandem_Repeat 1 37 74 + . . scaffold1678 flankbed promoter 52194 52241 . + . ID=CGI_10010381; scaffold1678 TRF Tandem_Repeat 52194 52241 96 + . . scaffold1678 flankbed promoter 52452 52491 . + . ID=CGI_10010381; scaffold1678 TRF Tandem_Repeat 52452 52491 80 + . . scaffold1678 flankbed promoter 122190 122367 . - . ID=CGI_10010382; scaffold1678 TRF Tandem_Repeat 122190 122367 62 + . . scaffold1678 flankbed promoter 254513 254541 . + . ID=CGI_10010395; scaffold1678 TRF Tandem_Repeat 254513 254541 58 + . . scaffold168 flankbed promoter 42792 42978 . - . ID=CGI_10025582; scaffold168 TRF Tandem_Repeat 42792 42978 286 + . . scaffold168 flankbed promoter 337342 337385 . - . ID=CGI_10025590; scaffold168 TRF Tandem_Repeat 337342 337385 88 + . . scaffold168 flankbed promoter 564814 564986 . + . ID=CGI_10025598; scaffold168 TRF Tandem_Repeat 564814 564986 274 + . . scaffold168 flankbed promoter 864739 864837 . - . ID=CGI_10025616; scaffold168 WUBlastX DNA_hAT 863449 864837 26 - . . scaffold168 flankbed promoter 864447 864837 . + . ID=CGI_10025617; scaffold168 WUBlastX DNA_hAT 863449 864837 26 - . . scaffold1680 flankbed promoter 36134 36172 . - . ID=CGI_10004138; scaffold1680 TRF Tandem_Repeat 36134 36172 69 + . . scaffold1680 flankbed promoter 36616 36654 . - . ID=CGI_10004138; scaffold1680 TRF Tandem_Repeat 36616 36654 69 + . . scaffold1682 flankbed promoter 64821 64912 . + . ID=CGI_10016042; scaffold1682 TRF Tandem_Repeat 64796 64912 117 + . . scaffold1682 flankbed promoter 233602 233649 . - . ID=CGI_10016049; scaffold1682 TRF Tandem_Repeat 233602 233649 96 + . . scaffold1682 flankbed promoter 234192 234299 . - . ID=CGI_10016049; scaffold1682 TRF Tandem_Repeat 234192 235056 1310 + . . scaffold1682 flankbed promoter 430039 430054 . - . ID=CGI_10016058; scaffold1682 WUBlastX LINE_L1 430039 430290 34 - . . scaffold1682 flankbed promoter 429952 430054 . - . ID=CGI_10016058; scaffold1682 WUBlastX LINE_L1-Tx1 429952 430212 42 - . . scaffold1682 flankbed promoter 430024 430054 . - . ID=CGI_10016058; scaffold1682 WUBlastX LINE_L1 430024 430209 66 - . . scaffold1686 flankbed promoter 13443 13463 . - . ID=CGI_10005073; scaffold1686 WUBlastX DNA_Sola 13236 13463 41 - . . scaffold1686 flankbed promoter 13694 13810 . - . ID=CGI_10005073; scaffold1686 WUBlastX DNA_Sola 13694 13810 46 - . . scaffold1686 flankbed promoter 26833 27018 . - . ID=CGI_10005074; scaffold1686 WUBlastX LTR_Gypsy 26833 27033 75 - . . scaffold1686 flankbed promoter 27000 27018 . - . ID=CGI_10005074; scaffold1686 WUBlastX LTR_Gypsy 27000 27161 51 - . . scaffold1686 flankbed promoter 26698 27018 . - . ID=CGI_10005074; scaffold1686 WUBlastX LTR_Gypsy-Cigr 26698 27033 52 - . . scaffold1686 flankbed promoter 26362 26532 . - . ID=CGI_10005074; scaffold1686 WUBlastX DNA_MuDR 26362 26532 54 - . . scaffold169 flankbed promoter 163553 163600 . - . ID=CGI_10022946; scaffold169 TRF Tandem_Repeat 163553 163600 57 + . . scaffold169 flankbed promoter 163553 163610 . - . ID=CGI_10022946; scaffold169 TRF Tandem_Repeat 163553 163610 53 + . . scaffold169 flankbed promoter 163553 163609 . - . ID=CGI_10022946; scaffold169 TRF Tandem_Repeat 163553 163609 51 + . . scaffold169 flankbed promoter 196223 196362 . - . ID=CGI_10022949; scaffold169 TRF Tandem_Repeat 196223 196362 208 + . . scaffold169 flankbed promoter 500899 501063 . + . ID=CGI_10022957; scaffold169 WUBlastX LTR_Gypsy 500899 501063 69 + . . scaffold169 flankbed promoter 562555 562611 . + . ID=CGI_10022958; scaffold169 WUBlastX DNA_Sola 562555 564417 864 + . . scaffold169 flankbed promoter 637792 638367 . - . ID=CGI_10022960; scaffold169 TRF Tandem_Repeat 637792 638367 1044 + . . scaffold1692 flankbed promoter 7006 7281 . - . ID=CGI_10004024; scaffold1692 TRF Tandem_Repeat 6650 7281 976 + . . scaffold1692 flankbed promoter 70891 70916 . + . ID=CGI_10004027; scaffold1692 TRF Tandem_Repeat 70891 70916 52 + . . scaffold1692 flankbed promoter 70997 71055 . + . ID=CGI_10004027; scaffold1692 TRF Tandem_Repeat 70997 71055 118 + . . scaffold1693 flankbed promoter 8513 8962 . + . ID=CGI_10001501; scaffold1693 TRF Tandem_Repeat 8513 8962 469 + . . scaffold1693 flankbed promoter 8511 8961 . + . ID=CGI_10001501; scaffold1693 TRF Tandem_Repeat 8511 8961 462 + . . scaffold1696 flankbed promoter 56543 56587 . + . ID=CGI_10003677; scaffold1696 TRF Tandem_Repeat 56543 56587 81 + . . scaffold1696 flankbed promoter 62620 62644 . + . ID=CGI_10003678; scaffold1696 TRF Tandem_Repeat 62620 62644 50 + . . scaffold1697 flankbed promoter 58260 58361 . - . ID=CGI_10007877; scaffold1697 WUBlastX DNA_Crypton 58260 58361 21 + . . scaffold1697 flankbed promoter 58417 58479 . - . ID=CGI_10007877; scaffold1697 WUBlastX DNA_Crypton 58417 58671 56 + . . scaffold1698 flankbed promoter 54240 54306 . + . ID=CGI_10019365; scaffold1698 TRF Tandem_Repeat 54240 54306 134 + . . scaffold1698 flankbed promoter 81737 82225 . - . ID=CGI_10019366; scaffold1698 WUBlastX LTR_Gypsy-Cigr 81737 82225 67 - . . scaffold1698 flankbed promoter 81641 82180 . - . ID=CGI_10019366; scaffold1698 WUBlastX LTR_Gypsy-Cigr 81641 82180 34 - . . scaffold1698 flankbed promoter 257196 257200 . - . ID=CGI_10019377; scaffold1698 TRF Tandem_Repeat 257196 257252 114 + . . scaffold1698 flankbed promoter 316386 316758 . - . ID=CGI_10019381; scaffold1698 TRF Tandem_Repeat 316386 316758 155 + . . scaffold1698 flankbed promoter 316404 316756 . - . ID=CGI_10019381; scaffold1698 TRF Tandem_Repeat 316404 316756 208 + . . scaffold1698 flankbed promoter 316386 316758 . - . ID=CGI_10019381; scaffold1698 TRF Tandem_Repeat 316386 316758 187 + . . scaffold1698 flankbed promoter 316465 316525 . - . ID=CGI_10019381; scaffold1698 TRF Tandem_Repeat 316465 316525 53 + . . scaffold1698 flankbed promoter 476441 476562 . + . ID=CGI_10019388; scaffold1698 TRF Tandem_Repeat 476441 476562 72 + . . scaffold1698 flankbed promoter 502808 503228 . + . ID=CGI_10019389; scaffold1698 TRF Tandem_Repeat 502675 503228 885 + . . scaffold1698 flankbed promoter 555188 555796 . - . ID=CGI_10019392; scaffold1698 WUBlastX LINE_RTE-X 555188 556096 57 + . . scaffold1698 flankbed promoter 555503 555796 . - . ID=CGI_10019392; scaffold1698 WUBlastX LINE_RTE-X 555503 556090 67 + . . scaffold1699 flankbed promoter 18881 18925 . + . ID=CGI_10008902; scaffold1699 TRF Tandem_Repeat 18881 18925 90 + . . scaffold1699 flankbed promoter 29207 29566 . - . ID=CGI_10008904; scaffold1699 WUBlastX LINE_R2-Hero 29207 29566 62 - . . scaffold1699 flankbed promoter 49957 50006 . + . ID=CGI_10008906; scaffold1699 TRF Tandem_Repeat 49957 50006 75 + . . scaffold1699 flankbed promoter 95191 95313 . - . ID=CGI_10008912; scaffold1699 TRF Tandem_Repeat 95191 95313 59 + . . scaffold1699 flankbed promoter 193575 193643 . + . ID=CGI_10008915; scaffold1699 TRF Tandem_Repeat 193575 193643 138 + . . scaffold170 flankbed promoter 957 1250 . + . ID=CGI_10007430; scaffold170 TRF Tandem_Repeat 448 1250 1114 + . . scaffold1702 flankbed promoter 17582 17881 . - . ID=CGI_10001261; scaffold1702 WUBlastX DNA_hAT-Ac 17582 17881 70 - . . scaffold1702 flankbed promoter 17669 17896 . - . ID=CGI_10001261; scaffold1702 WUBlastX DNA_hAT-Ac 17669 17896 78 - . . scaffold1703 flankbed promoter 9168 9211 . - . ID=CGI_10023035; scaffold1703 TRF Tandem_Repeat 9168 9211 88 + . . scaffold1703 flankbed promoter 153046 153111 . - . ID=CGI_10023043; scaffold1703 WUBlastX DNA_Kolobok-Hyd 152695 153111 31 - . . scaffold1703 flankbed promoter 170812 171063 . - . ID=CGI_10023044; scaffold1703 WUBlastX LTR_Gypsy 170812 171063 162 - . . scaffold1703 flankbed promoter 170546 170695 . - . ID=CGI_10023044; scaffold1703 WUBlastX LTR_Gypsy 170546 170695 36 - . . scaffold1703 flankbed promoter 170812 171111 . - . ID=CGI_10023044; scaffold1703 WUBlastX LTR_Gypsy 170812 171111 112 - . . scaffold1703 flankbed promoter 170685 170840 . - . ID=CGI_10023044; scaffold1703 WUBlastX LTR_Gypsy 170685 170840 75 - . . scaffold1703 flankbed promoter 170595 170810 . - . ID=CGI_10023044; scaffold1703 WUBlastX LTR_Gypsy 170595 170810 49 - . . scaffold1703 flankbed promoter 171059 171214 . - . ID=CGI_10023044; scaffold1703 WUBlastX LTR_Gypsy 171059 171214 25 - . . scaffold1703 flankbed promoter 175951 176232 . + . ID=CGI_10023045; scaffold1703 WUBlastX LINE_Penelope 175951 176232 76 + . . scaffold1703 flankbed promoter 210161 210413 . - . ID=CGI_10023048; scaffold1703 WUBlastX LTR_Ngaro 210161 210751 75 - . . scaffold1703 flankbed promoter 209781 210161 . - . ID=CGI_10023048; scaffold1703 WUBlastX LTR_Ngaro 209781 210161 124 - . . scaffold1703 flankbed promoter 210227 210413 . - . ID=CGI_10023048; scaffold1703 WUBlastX LTR_Ngaro 210227 210718 106 - . . scaffold1703 flankbed promoter 317054 317398 . - . ID=CGI_10023053; scaffold1703 WUBlastX DNA_Sola 316781 317398 119 - . . scaffold1703 flankbed promoter 516045 516105 . + . ID=CGI_10023065; scaffold1703 TRF Tandem_Repeat 516045 516105 122 + . . scaffold1703 flankbed promoter 583223 583263 . - . ID=CGI_10023067; scaffold1703 TRF Tandem_Repeat 583223 583263 82 + . . scaffold1703 flankbed promoter 618851 618879 . - . ID=CGI_10023069; scaffold1703 TRF Tandem_Repeat 618851 618879 58 + . . scaffold1703 flankbed promoter 619545 619591 . - . ID=CGI_10023069; scaffold1703 TRF Tandem_Repeat 619545 619591 94 + . . scaffold1704 flankbed promoter 80132 80284 . - . ID=CGI_10010166; scaffold1704 TRF Tandem_Repeat 80132 80300 218 + . . scaffold1704 flankbed promoter 221316 221343 . + . ID=CGI_10010174; scaffold1704 TRF Tandem_Repeat 221316 221343 56 + . . scaffold1705 flankbed promoter 64903 64951 . - . ID=CGI_10007467; scaffold1705 TRF Tandem_Repeat 64903 64951 98 + . . scaffold1705 flankbed promoter 91115 92015 . - . ID=CGI_10007470; scaffold1705 WUBlastX LTR_Gypsy-Cigr 91115 92638 822 - . . scaffold1705 flankbed promoter 91067 91141 . - . ID=CGI_10007470; scaffold1705 WUBlastX LTR_Copia 91067 91141 20 - . . scaffold1705 flankbed promoter 91481 92015 . - . ID=CGI_10007470; scaffold1705 WUBlastX LTR_Gypsy 91481 94249 2036 - . . scaffold1705 flankbed promoter 91376 92015 . - . ID=CGI_10007470; scaffold1705 WUBlastX LTR_Gypsy 91376 94810 1925 - . . scaffold1705 flankbed promoter 122108 122461 . - . ID=CGI_10007472; scaffold1705 WUBlastX LTR_Gypsy-Troyk 122108 122461 316 - . . scaffold1705 flankbed promoter 122760 123031 . - . ID=CGI_10007472; scaffold1705 WUBlastX LTR_Gypsy-Troyk 122760 124946 1824 - . . scaffold1705 flankbed promoter 122500 122757 . - . ID=CGI_10007472; scaffold1705 WUBlastX LTR_Gypsy 122500 122757 256 - . . scaffold1705 flankbed promoter 122297 122500 . - . ID=CGI_10007472; scaffold1705 WUBlastX LTR_Gypsy 122297 122500 24 - . . scaffold1705 flankbed promoter 122032 122148 . - . ID=CGI_10007472; scaffold1705 WUBlastX LTR_Gypsy-Troyk 121528 122148 188 - . . scaffold1706 flankbed promoter 4097 4237 . - . ID=CGI_10003661; scaffold1706 WUBlastX DNA_Kolobok-Hyd 4097 4237 34 - . . scaffold1706 flankbed promoter 4467 4691 . - . ID=CGI_10003661; scaffold1706 WUBlastX DNA_Kolobok-Hyd 4467 4691 21 - . . scaffold1706 flankbed promoter 3863 3886 . - . ID=CGI_10003661; scaffold1706 WUBlastX DNA_Kolobok-Hyd 3479 3886 47 - . . scaffold1707 flankbed promoter 20976 21892 . + . ID=CGI_10009947; scaffold1707 WUBlastX LTR_ERV-Foamy 20876 21892 161 - . . scaffold1707 flankbed promoter 20976 21634 . + . ID=CGI_10009947; scaffold1707 WUBlastX LTR_Gypsy 19934 21634 964 - . . scaffold1707 flankbed promoter 166226 166261 . - . ID=CGI_10009953; scaffold1707 TRF Tandem_Repeat 166226 166261 72 + . . scaffold1710 flankbed promoter 186907 186950 . + . ID=CGI_10022345; scaffold1710 TRF Tandem_Repeat 186907 186950 61 + . . scaffold1710 flankbed promoter 257352 257412 . + . ID=CGI_10022349; scaffold1710 TRF Tandem_Repeat 257352 257412 122 + . . scaffold1710 flankbed promoter 468871 469287 . + . ID=CGI_10022366; scaffold1710 WUBlastX LTR_Gypsy 467812 469287 1058 + . . scaffold1711 flankbed promoter 12101 12126 . - . ID=CGI_10015594; scaffold1711 TRF Tandem_Repeat 12101 12126 52 + . . scaffold1711 flankbed promoter 259155 259499 . - . ID=CGI_10015604; scaffold1711 TRF Tandem_Repeat 259155 259869 370 + . . scaffold1711 flankbed promoter 259123 259499 . - . ID=CGI_10015604; scaffold1711 TRF Tandem_Repeat 259123 259752 459 + . . scaffold1711 flankbed promoter 338556 339047 . + . ID=CGI_10015611; scaffold1711 WUBlastX LTR_Gypsy-Cigr 338556 339047 171 + . . scaffold1711 flankbed promoter 338649 339140 . + . ID=CGI_10015611; scaffold1711 WUBlastX LTR_Gypsy 338649 339308 34 + . . scaffold1711 flankbed promoter 338649 339140 . + . ID=CGI_10015611; scaffold1711 WUBlastX LTR_Gypsy 338649 339170 70 + . . scaffold1714 flankbed promoter 26898 27423 . - . ID=CGI_10013673; scaffold1714 WUBlastX LTR_Gypsy-Cigr 26898 27962 398 - . . scaffold1714 flankbed promoter 26669 26893 . - . ID=CGI_10013673; scaffold1714 WUBlastX LTR_Pao 26669 26893 63 - . . scaffold1714 flankbed promoter 27111 27423 . - . ID=CGI_10013673; scaffold1714 WUBlastX LTR_Gypsy 27111 27962 576 - . . scaffold1714 flankbed promoter 26621 26797 . - . ID=CGI_10013673; scaffold1714 WUBlastX LTR_Pao 26621 26797 53 - . . scaffold1714 flankbed promoter 217026 217277 . - . ID=CGI_10013674; scaffold1714 WUBlastX DNA_IS4EU 216276 217277 457 - . . scaffold1714 flankbed promoter 217904 218025 . - . ID=CGI_10013674; scaffold1714 WUBlastX DNA_IS4EU 217904 218230 42 - . . scaffold1714 flankbed promoter 217026 217037 . - . ID=CGI_10013674; scaffold1714 WUBlastX DNA_IS4EU 216279 217037 478 - . . scaffold1714 flankbed promoter 217838 218025 . - . ID=CGI_10013674; scaffold1714 WUBlastX DNA_IS4EU 217838 218188 37 - . . scaffold1714 flankbed promoter 217958 218025 . - . ID=CGI_10013674; scaffold1714 WUBlastX DNA_hAT-Tip100 217958 218188 55 - . . scaffold1714 flankbed promoter 235162 235606 . - . ID=CGI_10013675; scaffold1714 TRF Tandem_Repeat 235162 236337 1387 + . . scaffold1715 flankbed promoter 87865 87904 . + . ID=CGI_10019662; scaffold1715 TRF Tandem_Repeat 87865 87904 80 + . . scaffold1715 flankbed promoter 87959 88481 . + . ID=CGI_10019662; scaffold1715 TRF Tandem_Repeat 87959 88481 753 + . . scaffold1715 flankbed promoter 87959 88481 . + . ID=CGI_10019662; scaffold1715 TRF Tandem_Repeat 87959 88481 783 + . . scaffold1715 flankbed promoter 119044 119081 . + . ID=CGI_10019663; scaffold1715 TRF Tandem_Repeat 119044 119081 76 + . . scaffold1715 flankbed promoter 429453 429650 . + . ID=CGI_10019676; scaffold1715 WUBlastX LINE_L2 429453 430019 158 + . . scaffold1715 flankbed promoter 458620 459192 . - . ID=CGI_10019679; scaffold1715 WUBlastX DNA_PiggyBac 458620 459192 88 + . . scaffold1715 flankbed promoter 458659 459489 . - . ID=CGI_10019679; scaffold1715 WUBlastX DNA_PiggyBac 458659 459489 85 + . . scaffold1715 flankbed promoter 458677 459069 . - . ID=CGI_10019679; scaffold1715 WUBlastX DNA_PiggyBac 458677 459069 107 + . . scaffold1715 flankbed promoter 531492 531524 . - . ID=CGI_10019683; scaffold1715 TRF Tandem_Repeat 531492 531524 57 + . . scaffold1717 flankbed promoter 107439 107651 . - . ID=CGI_10013393; scaffold1717 WUBlastX DNA_hAT 107160 107651 122 - . . scaffold1717 flankbed promoter 137937 137984 . + . ID=CGI_10013396; scaffold1717 TRF Tandem_Repeat 137937 137984 60 + . . scaffold1719 flankbed promoter 135648 135702 . - . ID=CGI_10014274; scaffold1719 TRF Tandem_Repeat 135648 135702 110 + . . scaffold1719 flankbed promoter 320245 320676 . - . ID=CGI_10014286; scaffold1719 WUBlastX LTR_Pao 320245 320676 63 + . . scaffold1719 flankbed promoter 331436 331666 . - . ID=CGI_10014288; scaffold1719 WUBlastX LINE_L1-Tx1 331436 331666 134 + . . scaffold1719 flankbed promoter 331469 331705 . - . ID=CGI_10014288; scaffold1719 WUBlastX LINE_L1 331469 331705 81 + . . scaffold1719 flankbed promoter 331406 331738 . - . ID=CGI_10014288; scaffold1719 WUBlastX LINE_L1 331406 331738 56 + . . scaffold1719 flankbed promoter 347534 347704 . + . ID=CGI_10014290; scaffold1719 TRF Tandem_Repeat 347534 347704 182 + . . scaffold1719 flankbed promoter 368535 368695 . - . ID=CGI_10014291; scaffold1719 TRF Tandem_Repeat 368535 368751 425 + . . scaffold172 flankbed promoter 64123 64162 . - . ID=CGI_10013510; scaffold172 TRF Tandem_Repeat 64123 64162 80 + . . scaffold172 flankbed promoter 116324 116698 . - . ID=CGI_10013515; scaffold172 WUBlastX LTR_DIRS 116324 117271 138 + . . scaffold172 flankbed promoter 120044 120167 . + . ID=CGI_10013517; scaffold172 WUBlastX LTR_DIRS 119157 120167 633 + . . scaffold172 flankbed promoter 174899 174939 . - . ID=CGI_10013520; scaffold172 TRF Tandem_Repeat 174899 174939 52 + . . scaffold172 flankbed promoter 248663 248800 . - . ID=CGI_10013527; scaffold172 TRF Tandem_Repeat 248663 248800 136 + . . scaffold1720 flankbed promoter 265113 265731 . - . ID=CGI_10011949; scaffold1720 TRF Tandem_Repeat 265113 267868 2083 + . . scaffold1721 flankbed promoter 17619 17678 . - . ID=CGI_10003818; scaffold1721 TRF Tandem_Repeat 17619 17678 120 + . . scaffold1723 flankbed promoter 139076 139390 . - . ID=CGI_10010521; scaffold1723 TRF Tandem_Repeat 139076 139497 515 + . . scaffold1723 flankbed promoter 139077 139390 . - . ID=CGI_10010521; scaffold1723 TRF Tandem_Repeat 139077 139497 477 + . . scaffold1725 flankbed promoter 50297 50506 . - . ID=CGI_10004730; scaffold1725 TRF Tandem_Repeat 50297 50506 395 + . . scaffold1726 flankbed promoter 431026 431083 . - . ID=CGI_10015650; scaffold1726 TRF Tandem_Repeat 431026 431083 116 + . . scaffold1727 flankbed promoter 26437 27007 . + . ID=CGI_10002672; scaffold1727 TRF Tandem_Repeat 25372 27007 1634 + . . scaffold1728 flankbed promoter 94723 94758 . + . ID=CGI_10004912; scaffold1728 TRF Tandem_Repeat 94723 94758 72 + . . scaffold1729 flankbed promoter 196053 196307 . + . ID=CGI_10008492; scaffold1729 TRF Tandem_Repeat 196053 196307 289 + . . scaffold173 flankbed promoter 121657 122358 . + . ID=CGI_10008792; scaffold173 WUBlastX LINE_L1 121606 122358 39 + . . scaffold173 flankbed promoter 121810 122478 . + . ID=CGI_10008792; scaffold173 WUBlastX LINE_L2 121810 122478 135 + . . scaffold1733 flankbed promoter 60501 60609 . - . ID=CGI_10009478; scaffold1733 TRF Tandem_Repeat 60501 60609 121 + . . scaffold1733 flankbed promoter 73607 73674 . + . ID=CGI_10009481; scaffold1733 TRF Tandem_Repeat 72875 73674 1093 + . . scaffold1733 flankbed promoter 181930 181975 . + . ID=CGI_10009489; scaffold1733 TRF Tandem_Repeat 181930 181975 92 + . . scaffold1734 flankbed promoter 5908 6014 . + . ID=CGI_10010533; scaffold1734 TRF Tandem_Repeat 5908 6014 191 + . . scaffold1734 flankbed promoter 147171 147225 . + . ID=CGI_10010540; scaffold1734 WUBlastX DNA_TcMar-Tc1 146416 147225 140 - . . scaffold1734 flankbed promoter 147853 148043 . + . ID=CGI_10010540; scaffold1734 TRF Tandem_Repeat 147853 148043 249 + . . scaffold1735 flankbed promoter 17548 17697 . + . ID=CGI_10003739; scaffold1735 WUBlastX LINE_L2 17548 17697 23 + . . scaffold1735 flankbed promoter 81276 81310 . - . ID=CGI_10003745; scaffold1735 TRF Tandem_Repeat 81276 81310 63 + . . scaffold1736 flankbed promoter 12915 13238 . + . ID=CGI_10020947; scaffold1736 TRF Tandem_Repeat 12915 13238 488 + . . scaffold1736 flankbed promoter 364028 364052 . - . ID=CGI_10020966; scaffold1736 TRF Tandem_Repeat 364028 364052 50 + . . scaffold1736 flankbed promoter 440670 440970 . - . ID=CGI_10020973; scaffold1736 TRF Tandem_Repeat 440670 441958 1877 + . . scaffold1736 flankbed promoter 472444 472845 . + . ID=CGI_10020977; scaffold1736 WUBlastX LINE_L2 472444 472845 62 + . . scaffold1736 flankbed promoter 472416 472418 . + . ID=CGI_10020977; scaffold1736 WUBlastX LINE_L2 472365 472418 31 + . . scaffold1736 flankbed promoter 540193 540258 . - . ID=CGI_10020983; scaffold1736 TRF Tandem_Repeat 540193 540258 123 + . . scaffold1738 flankbed promoter 91005 91058 . + . ID=CGI_10008969; scaffold1738 TRF Tandem_Repeat 91005 91058 108 + . . scaffold174 flankbed promoter 164899 164976 . + . ID=CGI_10007099; scaffold174 TRF Tandem_Repeat 164899 164976 54 + . . scaffold174 flankbed promoter 165140 165345 . + . ID=CGI_10007099; scaffold174 TRF Tandem_Repeat 165140 165345 306 + . . scaffold1741 flankbed promoter 144113 144115 . + . ID=CGI_10024025; scaffold1741 WUBlastX LTR_Gypsy 144113 144352 107 + . . scaffold1741 flankbed promoter 144110 144115 . + . ID=CGI_10024025; scaffold1741 WUBlastX LTR_Gypsy 144110 144502 78 + . . scaffold1741 flankbed promoter 219303 219362 . - . ID=CGI_10024028; scaffold1741 TRF Tandem_Repeat 219303 219362 120 + . . scaffold1741 flankbed promoter 219487 219541 . - . ID=CGI_10024028; scaffold1741 TRF Tandem_Repeat 219487 219541 110 + . . scaffold1741 flankbed promoter 226191 226230 . + . ID=CGI_10024029; scaffold1741 TRF Tandem_Repeat 226191 226230 73 + . . scaffold1741 flankbed promoter 517846 517887 . - . ID=CGI_10024043; scaffold1741 TRF Tandem_Repeat 517846 517887 66 + . . scaffold1741 flankbed promoter 787483 787530 . + . ID=CGI_10024051; scaffold1741 TRF Tandem_Repeat 787483 787530 96 + . . scaffold1742 flankbed promoter 256047 256102 . - . ID=CGI_10010944; scaffold1742 TRF Tandem_Repeat 256047 256102 87 + . . scaffold1743 flankbed promoter 295963 296762 . - . ID=CGI_10011659; scaffold1743 TRF Tandem_Repeat 295963 296762 1102 + . . scaffold1745 flankbed promoter 76876 76916 . + . ID=CGI_10005405; scaffold1745 TRF Tandem_Repeat 76876 76916 82 + . . scaffold1745 flankbed promoter 124013 124069 . - . ID=CGI_10005406; scaffold1745 TRF Tandem_Repeat 124013 124069 114 + . . scaffold1745 flankbed promoter 124109 124133 . - . ID=CGI_10005406; scaffold1745 TRF Tandem_Repeat 124109 124133 50 + . . scaffold1746 flankbed promoter 152827 152907 . - . ID=CGI_10007283; scaffold1746 TRF Tandem_Repeat 152827 152907 112 + . . scaffold1746 flankbed promoter 153187 153438 . - . ID=CGI_10007283; scaffold1746 WUBlastX LINE_Penelope 153187 153438 210 - . . scaffold1746 flankbed promoter 153172 153471 . - . ID=CGI_10007283; scaffold1746 WUBlastX LINE_Penelope 153172 153471 136 - . . scaffold1746 flankbed promoter 153175 153534 . - . ID=CGI_10007283; scaffold1746 WUBlastX LINE_Penelope 153175 153534 53 - . . scaffold1746 flankbed promoter 162626 162669 . - . ID=CGI_10007285; scaffold1746 TRF Tandem_Repeat 162626 162669 72 + . . scaffold1746 flankbed promoter 163188 163247 . - . ID=CGI_10007285; scaffold1746 TRF Tandem_Repeat 163188 163247 111 + . . scaffold1746 flankbed promoter 163365 163373 . - . ID=CGI_10007285; scaffold1746 TRF Tandem_Repeat 163365 163444 151 + . . scaffold1747 flankbed promoter 42198 42242 . + . ID=CGI_10004400; scaffold1747 TRF Tandem_Repeat 42198 42242 90 + . . scaffold1747 flankbed promoter 42242 42285 . + . ID=CGI_10004400; scaffold1747 TRF Tandem_Repeat 42242 42285 88 + . . scaffold1748 flankbed promoter 22677 22727 . - . ID=CGI_10002254; scaffold1748 WUBlastX LINE_L2 22677 22844 39 - . . scaffold1748 flankbed promoter 22722 22727 . - . ID=CGI_10002254; scaffold1748 WUBlastX LINE_L2 22722 22844 103 - . . scaffold175 flankbed promoter 242258 242935 . + . ID=CGI_10021317; scaffold175 WUBlastX LINE_L1-Tx1 242258 242935 56 + . . scaffold175 flankbed promoter 242312 242872 . + . ID=CGI_10021317; scaffold175 WUBlastX LINE_L2 242312 242872 94 + . . scaffold175 flankbed promoter 332864 332896 . - . ID=CGI_10021321; scaffold175 TRF Tandem_Repeat 332864 332896 57 + . . scaffold175 flankbed promoter 337879 337916 . - . ID=CGI_10021322; scaffold175 TRF Tandem_Repeat 337879 337916 76 + . . scaffold175 flankbed promoter 441028 441415 . + . ID=CGI_10021331; scaffold175 TRF Tandem_Repeat 441028 441415 632 + . . scaffold175 flankbed promoter 441028 441488 . + . ID=CGI_10021331; scaffold175 TRF Tandem_Repeat 441028 441488 633 + . . scaffold1750 flankbed promoter 8163 8423 . + . ID=CGI_10021461; scaffold1750 TRF Tandem_Repeat 8163 8423 294 + . . scaffold1750 flankbed promoter 8446 8713 . + . ID=CGI_10021461; scaffold1750 TRF Tandem_Repeat 8446 8713 170 + . . scaffold1750 flankbed promoter 93357 93419 . + . ID=CGI_10021467; scaffold1750 TRF Tandem_Repeat 93357 93419 76 + . . scaffold1750 flankbed promoter 93356 93419 . + . ID=CGI_10021467; scaffold1750 TRF Tandem_Repeat 93356 93419 94 + . . scaffold1750 flankbed promoter 235685 236036 . - . ID=CGI_10021475; scaffold1750 TRF Tandem_Repeat 235685 236036 578 + . . scaffold1750 flankbed promoter 228777 228799 . + . ID=CGI_10021476; scaffold1750 TRF Tandem_Repeat 228727 228799 87 + . . scaffold1750 flankbed promoter 235685 236036 . + . ID=CGI_10021477; scaffold1750 TRF Tandem_Repeat 235685 236036 578 + . . scaffold1750 flankbed promoter 272659 272710 . - . ID=CGI_10021480; scaffold1750 TRF Tandem_Repeat 272659 272710 104 + . . scaffold1750 flankbed promoter 280728 280790 . - . ID=CGI_10021482; scaffold1750 TRF Tandem_Repeat 280728 280790 126 + . . scaffold1750 flankbed promoter 282666 282728 . - . ID=CGI_10021483; scaffold1750 TRF Tandem_Repeat 282666 282728 126 + . . scaffold1750 flankbed promoter 282860 283064 . - . ID=CGI_10021483; scaffold1750 TRF Tandem_Repeat 282860 283311 337 + . . scaffold1750 flankbed promoter 282861 283064 . - . ID=CGI_10021483; scaffold1750 TRF Tandem_Repeat 282861 283311 354 + . . scaffold1750 flankbed promoter 282860 283064 . - . ID=CGI_10021483; scaffold1750 TRF Tandem_Repeat 282860 283218 382 + . . scaffold1750 flankbed promoter 383992 384042 . - . ID=CGI_10021488; scaffold1750 TRF Tandem_Repeat 383992 384042 102 + . . scaffold1750 flankbed promoter 413811 413839 . - . ID=CGI_10021490; scaffold1750 TRF Tandem_Repeat 413811 413857 78 + . . scaffold1750 flankbed promoter 468030 468062 . - . ID=CGI_10021492; scaffold1750 TRF Tandem_Repeat 468030 468062 66 + . . scaffold1750 flankbed promoter 468203 468240 . - . ID=CGI_10021492; scaffold1750 TRF Tandem_Repeat 468203 468240 76 + . . scaffold1750 flankbed promoter 510607 510666 . - . ID=CGI_10021494; scaffold1750 TRF Tandem_Repeat 510607 510666 66 + . . scaffold1750 flankbed promoter 510607 510666 . - . ID=CGI_10021494; scaffold1750 TRF Tandem_Repeat 510607 510666 84 + . . scaffold1750 flankbed promoter 526314 526455 . - . ID=CGI_10021495; scaffold1750 TRF Tandem_Repeat 526314 526531 355 + . . scaffold1750 flankbed promoter 562385 562945 . - . ID=CGI_10021498; scaffold1750 WUBlastX LTR_Pao 562385 564151 764 - . . scaffold1750 flankbed promoter 562113 562427 . - . ID=CGI_10021498; scaffold1750 WUBlastX LTR_Pao 562113 562427 46 - . . scaffold1750 flankbed promoter 562188 562418 . - . ID=CGI_10021498; scaffold1750 WUBlastX LTR_Pao 562188 562418 167 - . . scaffold1750 flankbed promoter 617365 617764 . + . ID=CGI_10021499; scaffold1750 WUBlastX RC_Helitron 617111 617764 280 + . . scaffold1750 flankbed promoter 688234 688752 . - . ID=CGI_10021501; scaffold1750 WUBlastX LTR_Gypsy 688234 689337 406 - . . scaffold1750 flankbed promoter 688423 688752 . - . ID=CGI_10021501; scaffold1750 WUBlastX LTR_Gypsy-Troyk 688423 689343 547 - . . scaffold1750 flankbed promoter 688084 688629 . - . ID=CGI_10021501; scaffold1750 WUBlastX LTR_Gypsy-Troyk 688084 688629 297 - . . scaffold1750 flankbed promoter 692238 692316 . - . ID=CGI_10021502; scaffold1750 TRF Tandem_Repeat 692238 692343 86 + . . scaffold1750 flankbed promoter 692238 692316 . - . ID=CGI_10021502; scaffold1750 TRF Tandem_Repeat 692238 692388 158 + . . scaffold1750 flankbed promoter 692241 692316 . - . ID=CGI_10021502; scaffold1750 TRF Tandem_Repeat 692241 692388 156 + . . scaffold1750 flankbed promoter 692249 692316 . - . ID=CGI_10021502; scaffold1750 TRF Tandem_Repeat 692249 692382 119 + . . scaffold1751 flankbed promoter 128971 128976 . + . ID=CGI_10010086; scaffold1751 TRF Tandem_Repeat 128925 128976 104 + . . scaffold1751 flankbed promoter 175104 175187 . - . ID=CGI_10010089; scaffold1751 WUBlastX LTR_Gypsy 175104 175187 21 - . . scaffold1751 flankbed promoter 174784 175104 . - . ID=CGI_10010089; scaffold1751 WUBlastX LTR_Gypsy 174784 175104 146 - . . scaffold1751 flankbed promoter 175178 175279 . - . ID=CGI_10010089; scaffold1751 WUBlastX LTR_Gypsy 175178 175279 38 - . . scaffold1751 flankbed promoter 174781 175161 . - . ID=CGI_10010089; scaffold1751 WUBlastX LTR_Gypsy 174781 175161 119 - . . scaffold1753 flankbed promoter 40994 41088 . + . ID=CGI_10010801; scaffold1753 TRF Tandem_Repeat 40916 41088 182 + . . scaffold1753 flankbed promoter 187218 187307 . - . ID=CGI_10010807; scaffold1753 TRF Tandem_Repeat 187218 187307 119 + . . scaffold1754 flankbed promoter 151299 151326 . + . ID=CGI_10009581; scaffold1754 TRF Tandem_Repeat 151299 151326 56 + . . scaffold1754 flankbed promoter 215796 216740 . + . ID=CGI_10009584; scaffold1754 WUBlastX LTR_Gypsy 215796 218222 1737 + . . scaffold1757 flankbed promoter 43478 43816 . - . ID=CGI_10005112; scaffold1757 WUBlastX DNA_Academ 43478 43816 47 - . . scaffold1757 flankbed promoter 43493 43762 . - . ID=CGI_10005112; scaffold1757 WUBlastX DNA_Academ 43493 43762 58 - . . scaffold1757 flankbed promoter 43465 43506 . - . ID=CGI_10005112; scaffold1757 WUBlastX DNA_Academ 42988 43506 292 - . . scaffold1757 flankbed promoter 116867 117151 . + . ID=CGI_10005117; scaffold1757 WUBlastX LTR_DIRS 116753 117151 70 + . . scaffold1759 flankbed promoter 113035 113075 . + . ID=CGI_10010907; scaffold1759 TRF Tandem_Repeat 113035 113075 82 + . . scaffold1759 flankbed promoter 248761 249411 . - . ID=CGI_10010908; scaffold1759 WUBlastX LTR_Gypsy 248761 249411 73 - . . scaffold1759 flankbed promoter 248962 249375 . - . ID=CGI_10010908; scaffold1759 WUBlastX LTR_Gypsy 248962 249375 105 - . . scaffold1759 flankbed promoter 248998 249342 . - . ID=CGI_10010908; scaffold1759 WUBlastX LTR_Gypsy 248998 249342 110 - . . scaffold1761 flankbed promoter 125489 125522 . + . ID=CGI_10005533; scaffold1761 TRF Tandem_Repeat 125489 125522 68 + . . scaffold1763 flankbed promoter 86924 87281 . + . ID=CGI_10019527; scaffold1763 TRF Tandem_Repeat 86254 87281 1682 + . . scaffold1763 flankbed promoter 131027 131059 . - . ID=CGI_10019528; scaffold1763 TRF Tandem_Repeat 131027 131059 66 + . . scaffold1763 flankbed promoter 398838 398901 . + . ID=CGI_10019544; scaffold1763 TRF Tandem_Repeat 398838 398901 85 + . . scaffold1763 flankbed promoter 398958 399007 . + . ID=CGI_10019544; scaffold1763 TRF Tandem_Repeat 398958 399007 93 + . . scaffold1766 flankbed promoter 42022 42064 . - . ID=CGI_10006272; scaffold1766 TRF Tandem_Repeat 42022 42064 86 + . . scaffold1766 flankbed promoter 110447 110962 . + . ID=CGI_10006276; scaffold1766 WUBlastX LINE_L1-Tx1 109982 110962 106 - . . scaffold1766 flankbed promoter 110447 110941 . + . ID=CGI_10006276; scaffold1766 WUBlastX LINE_L1 110351 110941 108 - . . scaffold1766 flankbed promoter 110447 110950 . + . ID=CGI_10006276; scaffold1766 WUBlastX LINE_L1 109769 110950 51 - . . scaffold1767 flankbed promoter 157504 157569 . - . ID=CGI_10016909; scaffold1767 TRF Tandem_Repeat 157504 157569 132 + . . scaffold1767 flankbed promoter 199015 199051 . + . ID=CGI_10016911; scaffold1767 TRF Tandem_Repeat 199015 199051 74 + . . scaffold1767 flankbed promoter 222863 223006 . + . ID=CGI_10016915; scaffold1767 WUBlastX LTR_Ngaro 222863 223006 51 - . . scaffold1767 flankbed promoter 268953 269437 . - . ID=CGI_10016918; scaffold1767 WUBlastX LINE_L1-Tx1 268953 269561 164 - . . scaffold1767 flankbed promoter 275782 275814 . - . ID=CGI_10016919; scaffold1767 TRF Tandem_Repeat 275782 275814 66 + . . scaffold1767 flankbed promoter 275782 275814 . + . ID=CGI_10016920; scaffold1767 TRF Tandem_Repeat 275782 275814 66 + . . scaffold1767 flankbed promoter 419537 419592 . - . ID=CGI_10016930; scaffold1767 TRF Tandem_Repeat 419537 419592 112 + . . scaffold1769 flankbed promoter 90762 91037 . + . ID=CGI_10009237; scaffold1769 WUBlastX LTR_Gypsy 90762 91286 22 + . . scaffold1769 flankbed promoter 102128 102391 . + . ID=CGI_10009238; scaffold1769 WUBlastX LTR_Gypsy 102128 102652 37 + . . scaffold1769 flankbed promoter 137158 137203 . - . ID=CGI_10009240; scaffold1769 TRF Tandem_Repeat 137158 137203 92 + . . scaffold1769 flankbed promoter 137397 137447 . - . ID=CGI_10009240; scaffold1769 TRF Tandem_Repeat 137397 137447 102 + . . scaffold1769 flankbed promoter 138588 138935 . - . ID=CGI_10009241; scaffold1769 WUBlastX DNA_IS4EU 138540 138935 69 - . . scaffold1769 flankbed promoter 190481 190811 . - . ID=CGI_10009242; scaffold1769 WUBlastX LTR_Gypsy 190481 191326 85 - . . scaffold1769 flankbed promoter 189881 190811 . - . ID=CGI_10009242; scaffold1769 WUBlastX LTR_Gypsy 189881 191131 661 - . . scaffold1769 flankbed promoter 189843 189995 . - . ID=CGI_10009242; scaffold1769 WUBlastX LTR_Gypsy 189843 189995 20 - . . scaffold1769 flankbed promoter 193746 194018 . + . ID=CGI_10009243; scaffold1769 WUBlastX DNA_Crypton 193746 194324 176 + . . scaffold1769 flankbed promoter 215079 215103 . - . ID=CGI_10009244; scaffold1769 TRF Tandem_Repeat 215079 215103 50 + . . scaffold177 flankbed promoter 404455 404514 . + . ID=CGI_10016069; scaffold177 TRF Tandem_Repeat 404455 404514 111 + . . scaffold1770 flankbed promoter 91767 91844 . - . ID=CGI_10005023; scaffold1770 TRF Tandem_Repeat 91767 91844 147 + . . scaffold1771 flankbed promoter 894 1436 . + . ID=CGI_10004381; scaffold1771 TRF Tandem_Repeat 894 1436 255 + . . scaffold1771 flankbed promoter 880 1436 . + . ID=CGI_10004381; scaffold1771 TRF Tandem_Repeat 880 1436 288 + . . scaffold1771 flankbed promoter 24259 24554 . - . ID=CGI_10004383; scaffold1771 TRF Tandem_Repeat 24259 24554 296 + . . scaffold1771 flankbed promoter 25104 25178 . - . ID=CGI_10004383; scaffold1771 TRF Tandem_Repeat 25104 25311 199 + . . scaffold1772 flankbed promoter 261887 261919 . - . ID=CGI_10014815; scaffold1772 TRF Tandem_Repeat 261887 262343 717 + . . scaffold1772 flankbed promoter 269903 270085 . + . ID=CGI_10014816; scaffold1772 TRF Tandem_Repeat 269903 270085 249 + . . scaffold1772 flankbed promoter 283936 284002 . + . ID=CGI_10014817; scaffold1772 TRF Tandem_Repeat 283936 284002 102 + . . scaffold1773 flankbed promoter 273088 273179 . + . ID=CGI_10011229; scaffold1773 TRF Tandem_Repeat 273088 273179 53 + . . scaffold1773 flankbed promoter 273083 273179 . + . ID=CGI_10011229; scaffold1773 TRF Tandem_Repeat 273083 273179 78 + . . scaffold1773 flankbed promoter 272368 272684 . + . ID=CGI_10011229; scaffold1773 WUBlastX DNA_Maverick 272280 272684 148 + . . scaffold1773 flankbed promoter 277274 277718 . + . ID=CGI_10011230; scaffold1773 WUBlastX DNA_Maverick 277263 277718 124 - . . scaffold1773 flankbed promoter 277274 277751 . + . ID=CGI_10011230; scaffold1773 WUBlastX DNA_Maverick 277203 277751 90 - . . scaffold1779 flankbed promoter 27023 27086 . + . ID=CGI_10001861; scaffold1779 TRF Tandem_Repeat 27023 27086 53 + . . scaffold1780 flankbed promoter 39387 39445 . - . ID=CGI_10014544; scaffold1780 TRF Tandem_Repeat 39387 39445 118 + . . scaffold1780 flankbed promoter 39443 39488 . - . ID=CGI_10014544; scaffold1780 TRF Tandem_Repeat 39443 39488 92 + . . scaffold1780 flankbed promoter 93400 93445 . - . ID=CGI_10014547; scaffold1780 TRF Tandem_Repeat 93400 93445 83 + . . scaffold1780 flankbed promoter 164223 164568 . - . ID=CGI_10014551; scaffold1780 TRF Tandem_Repeat 164223 164857 999 + . . scaffold1780 flankbed promoter 265557 265653 . - . ID=CGI_10014555; scaffold1780 TRF Tandem_Repeat 265557 265950 487 + . . scaffold1780 flankbed promoter 340131 340189 . - . ID=CGI_10014562; scaffold1780 TRF Tandem_Repeat 340131 340189 118 + . . scaffold1782 flankbed promoter 26311 27203 . + . ID=CGI_10004241; scaffold1782 TRF Tandem_Repeat 25634 27203 1487 + . . scaffold1782 flankbed promoter 26311 26437 . + . ID=CGI_10004241; scaffold1782 TRF Tandem_Repeat 26255 26437 64 + . . scaffold1783 flankbed promoter 14356 14383 . - . ID=CGI_10001634; scaffold1783 TRF Tandem_Repeat 14356 14383 56 + . . scaffold1785 flankbed promoter 30810 30844 . - . ID=CGI_10024349; scaffold1785 TRF Tandem_Repeat 30810 30844 54 + . . scaffold1785 flankbed promoter 30937 30984 . - . ID=CGI_10024349; scaffold1785 TRF Tandem_Repeat 30937 30984 96 + . . scaffold1785 flankbed promoter 927663 927960 . - . ID=CGI_10024406; scaffold1785 WUBlastX DNA_hAT-Ac 927511 927960 67 - . . scaffold1785 flankbed promoter 927663 927816 . - . ID=CGI_10024406; scaffold1785 WUBlastX DNA_hAT-Ac 927475 927816 75 - . . scaffold1788 flankbed promoter 39789 39905 . - . ID=CGI_10019911; scaffold1788 WUBlastX LTR_Copia 39789 39905 21 - . . scaffold1788 flankbed promoter 39819 40052 . - . ID=CGI_10019911; scaffold1788 WUBlastX DNA_Maverick 39819 40052 63 - . . scaffold1788 flankbed promoter 40283 40366 . - . ID=CGI_10019911; scaffold1788 WUBlastX DNA_Maverick 40283 40366 31 - . . scaffold1788 flankbed promoter 40639 40744 . - . ID=CGI_10019911; scaffold1788 WUBlastX DNA_Maverick 40639 41328 254 - . . scaffold1788 flankbed promoter 40516 40744 . - . ID=CGI_10019911; scaffold1788 WUBlastX DNA_Maverick 40516 41316 192 - . . scaffold1788 flankbed promoter 40329 40583 . - . ID=CGI_10019911; scaffold1788 WUBlastX DNA_Maverick 40329 40583 132 - . . scaffold1788 flankbed promoter 71736 71777 . - . ID=CGI_10019913; scaffold1788 TRF Tandem_Repeat 71736 71777 84 + . . scaffold1788 flankbed promoter 125256 125295 . + . ID=CGI_10019914; scaffold1788 TRF Tandem_Repeat 125256 125295 80 + . . scaffold1788 flankbed promoter 395806 396612 . + . ID=CGI_10019927; scaffold1788 WUBlastX LINE_L2 395806 397344 1019 + . . scaffold1788 flankbed promoter 404769 404795 . - . ID=CGI_10019928; scaffold1788 TRF Tandem_Repeat 404769 404795 54 + . . scaffold1788 flankbed promoter 470360 470416 . - . ID=CGI_10019933; scaffold1788 TRF Tandem_Repeat 470360 470416 114 + . . scaffold1789 flankbed promoter 62995 63069 . - . ID=CGI_10003178; scaffold1789 WUBlastX LINE_L2 62995 63150 27 - . . scaffold1789 flankbed promoter 63037 63069 . - . ID=CGI_10003178; scaffold1789 WUBlastX LINE_L2 63037 63150 57 - . . scaffold1791 flankbed promoter 19149 19194 . + . ID=CGI_10007865; scaffold1791 TRF Tandem_Repeat 19136 19194 77 + . . scaffold1791 flankbed promoter 109819 109862 . - . ID=CGI_10007871; scaffold1791 TRF Tandem_Repeat 109819 109862 52 + . . scaffold1792 flankbed promoter 151815 152358 . + . ID=CGI_10012746; scaffold1792 WUBlastX DNA_TcMar-Fot1 150514 152358 734 - . . scaffold1792 flankbed promoter 242086 242163 . + . ID=CGI_10012748; scaffold1792 TRF Tandem_Repeat 241934 242163 343 + . . scaffold1792 flankbed promoter 242086 242163 . + . ID=CGI_10012748; scaffold1792 TRF Tandem_Repeat 241928 242163 274 + . . scaffold1792 flankbed promoter 271596 271624 . - . ID=CGI_10012749; scaffold1792 TRF Tandem_Repeat 271596 271624 58 + . . scaffold1794 flankbed promoter 173097 173123 . + . ID=CGI_10019576; scaffold1794 TRF Tandem_Repeat 172461 173123 1056 + . . scaffold1794 flankbed promoter 318588 318677 . - . ID=CGI_10019587; scaffold1794 WUBlastX LINE_CR1-L2 318588 318677 28 + . . scaffold1794 flankbed promoter 318036 318092 . - . ID=CGI_10019587; scaffold1794 WUBlastX LINE_L2 318036 318092 24 + . . scaffold1794 flankbed promoter 318103 318474 . - . ID=CGI_10019587; scaffold1794 WUBlastX LINE_L2 318103 318474 94 + . . scaffold1794 flankbed promoter 552232 552786 . - . ID=CGI_10019596; scaffold1794 WUBlastX DNA_Academ 552232 552786 300 - . . scaffold1794 flankbed promoter 552840 553094 . - . ID=CGI_10019596; scaffold1794 WUBlastX DNA_Academ 552840 553094 150 - . . scaffold1794 flankbed promoter 553078 553194 . - . ID=CGI_10019596; scaffold1794 WUBlastX DNA_Academ 553078 553200 37 - . . scaffold1794 flankbed promoter 591452 591457 . - . ID=CGI_10019600; scaffold1794 WUBlastX LINE_Penelope 591347 591457 81 + . . scaffold1796 flankbed promoter 34735 34857 . + . ID=CGI_10005838; scaffold1796 WUBlastX DNA_hAT-Tip100 34735 34857 40 + . . scaffold1796 flankbed promoter 34631 34738 . + . ID=CGI_10005838; scaffold1796 WUBlastX DNA_hAT-Tip100 34631 34738 48 + . . scaffold1796 flankbed promoter 84389 84418 . - . ID=CGI_10005839; scaffold1796 TRF Tandem_Repeat 84389 84418 60 + . . scaffold1799 flankbed promoter 67367 67397 . - . ID=CGI_10003631; scaffold1799 TRF Tandem_Repeat 67367 67397 62 + . . scaffold1799 flankbed promoter 67397 67421 . - . ID=CGI_10003631; scaffold1799 TRF Tandem_Repeat 67397 67421 50 + . . scaffold1799 flankbed promoter 66957 67166 . - . ID=CGI_10003631; scaffold1799 WUBlastX DNA_Harbinger 66957 67166 69 + . . scaffold180 flankbed promoter 76306 76403 . + . ID=CGI_10004234; scaffold180 TRF Tandem_Repeat 76306 76403 54 + . . scaffold180 flankbed promoter 76331 76436 . + . ID=CGI_10004234; scaffold180 TRF Tandem_Repeat 76331 76436 108 + . . scaffold180 flankbed promoter 76346 76427 . + . ID=CGI_10004234; scaffold180 TRF Tandem_Repeat 76346 76427 80 + . . scaffold180 flankbed promoter 76450 76908 . + . ID=CGI_10004234; scaffold180 WUBlastX DNA_Maverick 76450 76908 139 + . . scaffold180 flankbed promoter 76800 77108 . + . ID=CGI_10004234; scaffold180 WUBlastX DNA_Maverick 76800 77108 108 + . . scaffold180 flankbed promoter 76447 76800 . + . ID=CGI_10004234; scaffold180 WUBlastX DNA_Maverick 76447 76800 195 + . . scaffold1800 flankbed promoter 138117 138160 . - . ID=CGI_10016400; scaffold1800 TRF Tandem_Repeat 138117 138160 88 + . . scaffold1800 flankbed promoter 220347 220751 . - . ID=CGI_10016402; scaffold1800 TRF Tandem_Repeat 220347 220751 101 + . . scaffold1800 flankbed promoter 220347 220411 . - . ID=CGI_10016402; scaffold1800 TRF Tandem_Repeat 220347 220411 60 + . . scaffold1800 flankbed promoter 220446 220591 . - . ID=CGI_10016402; scaffold1800 TRF Tandem_Repeat 220446 220591 81 + . . scaffold1800 flankbed promoter 309533 309586 . + . ID=CGI_10016406; scaffold1800 WUBlastX LTR_Gypsy 309533 309925 235 + . . scaffold1802 flankbed promoter 147243 147299 . + . ID=CGI_10007155; scaffold1802 TRF Tandem_Repeat 147243 147299 114 + . . scaffold1803 flankbed promoter 371609 371686 . + . ID=CGI_10014060; scaffold1803 TRF Tandem_Repeat 371609 371686 156 + . . scaffold1804 flankbed promoter 16608 16643 . + . ID=CGI_10013359; scaffold1804 TRF Tandem_Repeat 16608 16643 63 + . . scaffold1804 flankbed promoter 16366 16493 . + . ID=CGI_10013359; scaffold1804 TRF Tandem_Repeat 16366 16493 238 + . . scaffold1804 flankbed promoter 25977 26171 . + . ID=CGI_10013360; scaffold1804 TRF Tandem_Repeat 25977 26171 273 + . . scaffold1804 flankbed promoter 74329 74671 . - . ID=CGI_10013364; scaffold1804 TRF Tandem_Repeat 74329 74671 488 + . . scaffold1804 flankbed promoter 107100 107140 . - . ID=CGI_10013367; scaffold1804 TRF Tandem_Repeat 107100 107140 73 + . . scaffold1804 flankbed promoter 107849 107885 . - . ID=CGI_10013367; scaffold1804 TRF Tandem_Repeat 107849 107885 74 + . . scaffold1804 flankbed promoter 155437 155462 . + . ID=CGI_10013371; scaffold1804 TRF Tandem_Repeat 155437 155462 52 + . . scaffold1804 flankbed promoter 329176 329204 . + . ID=CGI_10013387; scaffold1804 TRF Tandem_Repeat 329176 329204 58 + . . scaffold1805 flankbed promoter 26554 27269 . + . ID=CGI_10012439; scaffold1805 WUBlastX LINE_L1 26529 27269 33 + . . scaffold1805 flankbed promoter 26691 27407 . + . ID=CGI_10012439; scaffold1805 WUBlastX LINE_L2 26691 27407 78 + . . scaffold1805 flankbed promoter 315804 315980 . - . ID=CGI_10012452; scaffold1805 WUBlastX LINE_L1 315804 315980 72 - . . scaffold1806 flankbed promoter 89123 89194 . - . ID=CGI_10006158; scaffold1806 WUBlastX LINE_Penelope 88937 89194 21 + . . scaffold1808 flankbed promoter 7425 7454 . + . ID=CGI_10008026; scaffold1808 TRF Tandem_Repeat 7425 7454 60 + . . scaffold1808 flankbed promoter 25519 25594 . - . ID=CGI_10008027; scaffold1808 TRF Tandem_Repeat 25519 25594 116 + . . scaffold1810 flankbed promoter 6580 6774 . + . ID=CGI_10007553; scaffold1810 WUBlastX LTR_DIRS 6580 6774 102 + . . scaffold1810 flankbed promoter 6368 6508 . + . ID=CGI_10007553; scaffold1810 WUBlastX LTR_DIRS 6020 6508 260 + . . scaffold1810 flankbed promoter 6368 6553 . + . ID=CGI_10007553; scaffold1810 WUBlastX LTR_DIRS 5972 6553 232 + . . scaffold1810 flankbed promoter 14027 14311 . - . ID=CGI_10007554; scaffold1810 WUBlastX DNA_Harbinger 14027 14311 240 - . . scaffold1810 flankbed promoter 13842 13898 . - . ID=CGI_10007554; scaffold1810 WUBlastX DNA_Harbinger 13683 13898 65 - . . scaffold1810 flankbed promoter 89424 89469 . - . ID=CGI_10007559; scaffold1810 TRF Tandem_Repeat 89424 89469 92 + . . scaffold1811 flankbed promoter 67041 67295 . - . ID=CGI_10004796; scaffold1811 WUBlastX DNA_Kolobok-IS4 66420 67295 445 - . . scaffold1812 flankbed promoter 39409 39927 . - . ID=CGI_10004688; scaffold1812 WUBlastX LINE_L1 39409 39927 81 - . . scaffold1812 flankbed promoter 39619 39927 . + . ID=CGI_10004689; scaffold1812 WUBlastX LINE_L1 39409 39927 81 - . . scaffold1815 flankbed promoter 30095 30133 . + . ID=CGI_10010260; scaffold1815 TRF Tandem_Repeat 30095 30133 60 + . . scaffold1815 flankbed promoter 200250 200288 . + . ID=CGI_10010269; scaffold1815 TRF Tandem_Repeat 200250 200288 78 + . . scaffold1815 flankbed promoter 200465 200516 . + . ID=CGI_10010269; scaffold1815 TRF Tandem_Repeat 200465 200516 86 + . . scaffold1815 flankbed promoter 200465 200522 . + . ID=CGI_10010269; scaffold1815 TRF Tandem_Repeat 200465 200522 77 + . . scaffold1815 flankbed promoter 200465 200522 . + . ID=CGI_10010269; scaffold1815 TRF Tandem_Repeat 200465 200522 54 + . . scaffold1815 flankbed promoter 200766 200804 . + . ID=CGI_10010269; scaffold1815 TRF Tandem_Repeat 200766 200804 71 + . . scaffold1815 flankbed promoter 218325 218462 . + . ID=CGI_10010270; scaffold1815 TRF Tandem_Repeat 218325 218462 231 + . . scaffold1815 flankbed promoter 218567 219017 . + . ID=CGI_10010270; scaffold1815 TRF Tandem_Repeat 218567 219017 713 + . . scaffold1815 flankbed promoter 218646 218756 . + . ID=CGI_10010270; scaffold1815 TRF Tandem_Repeat 218646 218756 70 + . . scaffold1815 flankbed promoter 237644 237675 . - . ID=CGI_10010271; scaffold1815 TRF Tandem_Repeat 237644 237675 64 + . . scaffold1816 flankbed promoter 19251 19421 . + . ID=CGI_10014391; scaffold1816 WUBlastX DNA_TcMar-Tc1 19251 19733 78 + . . scaffold1816 flankbed promoter 19038 19421 . + . ID=CGI_10014391; scaffold1816 WUBlastX DNA_TcMar-Tc1 19038 19745 75 + . . scaffold1816 flankbed promoter 55148 55201 . - . ID=CGI_10014393; scaffold1816 WUBlastX LINE_L1 55148 55201 31 + . . scaffold1816 flankbed promoter 266271 266708 . + . ID=CGI_10014405; scaffold1816 WUBlastX DNA_Kolobok-Hyd 266271 267023 58 + . . scaffold1816 flankbed promoter 266065 266166 . + . ID=CGI_10014405; scaffold1816 WUBlastX DNA_Kolobok-Hyd 266065 266166 25 + . . scaffold1816 flankbed promoter 306286 306960 . - . ID=CGI_10014407; scaffold1816 WUBlastX LTR_Gypsy-Cigr 306286 306960 112 - . . scaffold1816 flankbed promoter 306298 306765 . - . ID=CGI_10014407; scaffold1816 WUBlastX LTR_Gypsy-Cigr 306298 306765 150 - . . scaffold1816 flankbed promoter 322521 323138 . - . ID=CGI_10014408; scaffold1816 WUBlastX LTR_Gypsy 322521 323138 83 - . . scaffold1816 flankbed promoter 322404 322976 . - . ID=CGI_10014408; scaffold1816 WUBlastX LTR_Gypsy-Cigr 322404 322976 117 - . . scaffold1816 flankbed promoter 322518 322991 . - . ID=CGI_10014408; scaffold1816 WUBlastX LTR_Gypsy-Cigr 322518 322991 155 - . . scaffold1817 flankbed promoter 44076 44113 . + . ID=CGI_10005251; scaffold1817 TRF Tandem_Repeat 44076 44113 51 + . . scaffold1818 flankbed promoter 2871 2972 . + . ID=CGI_10003624; scaffold1818 WUBlastX LTR_DIRS 2871 2972 41 + . . scaffold1819 flankbed promoter 73023 73187 . + . ID=CGI_10007289; scaffold1819 WUBlastX LTR_Gypsy 73023 73187 32 - . . scaffold1819 flankbed promoter 73053 73247 . + . ID=CGI_10007289; scaffold1819 WUBlastX LTR_Gypsy 73053 73247 21 - . . scaffold1819 flankbed promoter 72378 72519 . + . ID=CGI_10007289; scaffold1819 WUBlastX LTR_Gypsy 71845 72519 242 - . . scaffold1819 flankbed promoter 72470 73057 . + . ID=CGI_10007289; scaffold1819 WUBlastX LTR_Gypsy 72470 73057 87 - . . scaffold1819 flankbed promoter 72461 72955 . + . ID=CGI_10007289; scaffold1819 WUBlastX LTR_Gypsy 72461 72955 147 - . . scaffold1819 flankbed promoter 73053 73145 . + . ID=CGI_10007289; scaffold1819 WUBlastX LTR_Gypsy 73053 73145 38 - . . scaffold1819 flankbed promoter 73005 73130 . + . ID=CGI_10007289; scaffold1819 WUBlastX LTR_Gypsy 73005 73130 39 - . . scaffold1819 flankbed promoter 102747 103240 . - . ID=CGI_10007291; scaffold1819 TRF Tandem_Repeat 102747 103277 906 + . . scaffold182 flankbed promoter 8907 8956 . - . ID=CGI_10001072; scaffold182 TRF Tandem_Repeat 8907 8956 100 + . . scaffold1820 flankbed promoter 36486 36662 . + . ID=CGI_10002447; scaffold1820 TRF Tandem_Repeat 36410 36662 319 + . . scaffold1820 flankbed promoter 36486 37047 . + . ID=CGI_10002447; scaffold1820 TRF Tandem_Repeat 36398 37047 560 + . . scaffold1820 flankbed promoter 36667 37047 . + . ID=CGI_10002447; scaffold1820 TRF Tandem_Repeat 36667 37047 483 + . . scaffold1820 flankbed promoter 37071 37376 . + . ID=CGI_10002447; scaffold1820 TRF Tandem_Repeat 37071 37376 244 + . . scaffold1820 flankbed promoter 37071 37376 . + . ID=CGI_10002447; scaffold1820 TRF Tandem_Repeat 37071 37376 271 + . . scaffold1821 flankbed promoter 184283 184423 . - . ID=CGI_10011292; scaffold1821 WUBlastX LINE_CR1-L2 184283 184423 28 + . . scaffold1821 flankbed promoter 184044 184263 . - . ID=CGI_10011292; scaffold1821 WUBlastX LINE_L2 183886 184263 127 + . . scaffold1821 flankbed promoter 184316 184420 . - . ID=CGI_10011292; scaffold1821 WUBlastX LINE_L2 184316 184420 38 + . . scaffold1822 flankbed promoter 67023 67069 . - . ID=CGI_10012047; scaffold1822 TRF Tandem_Repeat 67023 67069 94 + . . scaffold1822 flankbed promoter 107151 107204 . + . ID=CGI_10012051; scaffold1822 TRF Tandem_Repeat 107151 107204 108 + . . scaffold1822 flankbed promoter 107455 107570 . + . ID=CGI_10012051; scaffold1822 TRF Tandem_Repeat 107455 107570 137 + . . scaffold1822 flankbed promoter 178037 178117 . + . ID=CGI_10012060; scaffold1822 TRF Tandem_Repeat 178037 178117 155 + . . scaffold1822 flankbed promoter 221129 221159 . - . ID=CGI_10012063; scaffold1822 TRF Tandem_Repeat 221129 221159 62 + . . scaffold1822 flankbed promoter 307369 307416 . - . ID=CGI_10012066; scaffold1822 TRF Tandem_Repeat 307369 307416 96 + . . scaffold1823 flankbed promoter 486 568 . + . ID=CGI_10005168; scaffold1823 TRF Tandem_Repeat 486 568 87 + . . scaffold1823 flankbed promoter 25765 25929 . + . ID=CGI_10005169; scaffold1823 WUBlastX DNA_IS4EU 25765 25929 62 + . . scaffold1823 flankbed promoter 25639 25932 . + . ID=CGI_10005169; scaffold1823 WUBlastX DNA_IS4EU 25639 25932 29 + . . scaffold1823 flankbed promoter 25804 25959 . + . ID=CGI_10005169; scaffold1823 WUBlastX DNA_Kolobok-IS4 25804 25959 40 + . . scaffold1825 flankbed promoter 62875 63082 . + . ID=CGI_10011139; scaffold1825 WUBlastX LTR_Gypsy 62123 63082 237 - . . scaffold1825 flankbed promoter 62875 62929 . + . ID=CGI_10011139; scaffold1825 WUBlastX LTR_Gypsy 58733 62929 2299 - . . scaffold1825 flankbed promoter 177382 177447 . - . ID=CGI_10011147; scaffold1825 TRF Tandem_Repeat 177382 177447 132 + . . scaffold1825 flankbed promoter 177548 177602 . - . ID=CGI_10011147; scaffold1825 TRF Tandem_Repeat 177548 177602 110 + . . scaffold1826 flankbed promoter 38665 39509 . + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 38352 39509 165 + . . scaffold1826 flankbed promoter 38665 39365 . + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 38562 39365 220 + . . scaffold1826 flankbed promoter 38665 39242 . + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 38547 39242 233 + . . scaffold1826 flankbed promoter 38665 39284 . + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 38409 39284 211 + . . scaffold1826 flankbed promoter 141663 141818 . + . ID=CGI_10006244; scaffold1826 TRF Tandem_Repeat 141608 141818 156 + . . scaffold1826 flankbed promoter 141817 141966 . + . ID=CGI_10006244; scaffold1826 TRF Tandem_Repeat 141817 141966 167 + . . scaffold1827 flankbed promoter 53724 53766 . + . ID=CGI_10013796; scaffold1827 TRF Tandem_Repeat 53724 53766 54 + . . scaffold1827 flankbed promoter 159067 159120 . - . ID=CGI_10013802; scaffold1827 TRF Tandem_Repeat 159067 159120 65 + . . scaffold1832 flankbed promoter 212883 212935 . + . ID=CGI_10018470; scaffold1832 TRF Tandem_Repeat 212883 212935 106 + . . scaffold1832 flankbed promoter 294043 294147 . + . ID=CGI_10018474; scaffold1832 WUBlastX DNA_hAT 294043 294147 28 + . . scaffold1832 flankbed promoter 294759 294911 . + . ID=CGI_10018474; scaffold1832 WUBlastX DNA_hAT 294759 294911 33 + . . scaffold1832 flankbed promoter 303843 304175 . + . ID=CGI_10018475; scaffold1832 WUBlastX LINE_RTE-X 303843 304175 29 - . . scaffold1832 flankbed promoter 303999 304175 . + . ID=CGI_10018475; scaffold1832 WUBlastX LINE_RTE-X 303999 304175 71 - . . scaffold1832 flankbed promoter 315552 315771 . - . ID=CGI_10018476; scaffold1832 TRF Tandem_Repeat 315552 315771 337 + . . scaffold1832 flankbed promoter 450554 451115 . - . ID=CGI_10018483; scaffold1832 TRF Tandem_Repeat 450554 451215 788 + . . scaffold1832 flankbed promoter 450554 451115 . - . ID=CGI_10018483; scaffold1832 TRF Tandem_Repeat 450554 451215 932 + . . scaffold1832 flankbed promoter 483392 483421 . - . ID=CGI_10018487; scaffold1832 TRF Tandem_Repeat 483392 483435 88 + . . scaffold1833 flankbed promoter 18592 18675 . - . ID=CGI_10007297; scaffold1833 WUBlastX LINE_RTE-X 18040 18675 195 - . . scaffold1834 flankbed promoter 33011 33041 . - . ID=CGI_10016650; scaffold1834 TRF Tandem_Repeat 33011 33041 55 + . . scaffold1834 flankbed promoter 111346 111402 . + . ID=CGI_10016653; scaffold1834 TRF Tandem_Repeat 111346 111402 105 + . . scaffold1834 flankbed promoter 186660 186691 . + . ID=CGI_10016658; scaffold1834 TRF Tandem_Repeat 186660 186691 64 + . . scaffold1834 flankbed promoter 330199 330247 . - . ID=CGI_10016670; scaffold1834 TRF Tandem_Repeat 330199 330247 91 + . . scaffold1834 flankbed promoter 474564 474962 . - . ID=CGI_10016676; scaffold1834 WUBlastX DNA_Kolobok-Hyd 474564 474962 21 - . . scaffold1834 flankbed promoter 474117 474902 . - . ID=CGI_10016676; scaffold1834 WUBlastX DNA_Kolobok-Hyd 474117 474902 51 - . . scaffold1834 flankbed promoter 474159 474821 . - . ID=CGI_10016676; scaffold1834 WUBlastX DNA_IS4EU 474159 474821 58 - . . scaffold1835 flankbed promoter 81468 81536 . - . ID=CGI_10015180; scaffold1835 TRF Tandem_Repeat 81468 81536 102 + . . scaffold1835 flankbed promoter 405059 405798 . + . ID=CGI_10015196; scaffold1835 WUBlastX LINE_RTE-X 403375 405798 1059 - . . scaffold1836 flankbed promoter 180394 180421 . + . ID=CGI_10026269; scaffold1836 TRF Tandem_Repeat 180394 180421 56 + . . scaffold1836 flankbed promoter 180421 180481 . + . ID=CGI_10026269; scaffold1836 TRF Tandem_Repeat 180421 180481 122 + . . scaffold1836 flankbed promoter 568728 569003 . - . ID=CGI_10026294; scaffold1836 WUBlastX DNA_TcMar-Tc1 568728 569003 31 + . . scaffold1836 flankbed promoter 568791 569475 . - . ID=CGI_10026294; scaffold1836 WUBlastX DNA_TcMar-Tc1 568791 569579 61 + . . scaffold1836 flankbed promoter 610579 610583 . - . ID=CGI_10026296; scaffold1836 TRF Tandem_Repeat 610579 610631 97 + . . scaffold1836 flankbed promoter 825180 825220 . - . ID=CGI_10026312; scaffold1836 TRF Tandem_Repeat 825180 825220 55 + . . scaffold1836 flankbed promoter 849311 849349 . + . ID=CGI_10026314; scaffold1836 TRF Tandem_Repeat 849311 849349 78 + . . scaffold1836 flankbed promoter 940246 940376 . - . ID=CGI_10026317; scaffold1836 TRF Tandem_Repeat 940246 940376 137 + . . scaffold1836 flankbed promoter 1135042 1135330 . - . ID=CGI_10026327; scaffold1836 WUBlastX LINE_L2 1135042 1135689 52 + . . scaffold1836 flankbed promoter 1135144 1135330 . - . ID=CGI_10026327; scaffold1836 WUBlastX LINE_L1 1135144 1135662 66 + . . scaffold1836 flankbed promoter 1134925 1135330 . - . ID=CGI_10026327; scaffold1836 WUBlastX LINE_L1 1134925 1135656 31 + . . scaffold1838 flankbed promoter 18427 18472 . + . ID=CGI_10014238; scaffold1838 TRF Tandem_Repeat 18427 18472 83 + . . scaffold1838 flankbed promoter 247319 247361 . - . ID=CGI_10014257; scaffold1838 TRF Tandem_Repeat 247319 247361 59 + . . scaffold1838 flankbed promoter 373773 373820 . - . ID=CGI_10014268; scaffold1838 TRF Tandem_Repeat 373773 373820 62 + . . scaffold1838 flankbed promoter 385158 385529 . - . ID=CGI_10014269; scaffold1838 WUBlastX LINE_RTE-X 385158 386090 334 - . . scaffold184 flankbed promoter 211422 211482 . + . ID=CGI_10014798; scaffold184 TRF Tandem_Repeat 211422 211482 122 + . . scaffold184 flankbed promoter 211931 212029 . + . ID=CGI_10014798; scaffold184 TRF Tandem_Repeat 211931 212029 189 + . . scaffold1840 flankbed promoter 20101 20138 . + . ID=CGI_10006070; scaffold1840 TRF Tandem_Repeat 20101 20138 62 + . . scaffold1841 flankbed promoter 73535 73588 . - . ID=CGI_10008268; scaffold1841 TRF Tandem_Repeat 73535 73588 74 + . . scaffold1843 flankbed promoter 223153 223175 . - . ID=CGI_10011892; scaffold1843 WUBlastX LTR_Gypsy 223153 224454 1169 - . . scaffold1843 flankbed promoter 223153 224080 . - . ID=CGI_10011893; scaffold1843 WUBlastX LTR_Gypsy 223153 224454 1169 - . . scaffold1843 flankbed promoter 233616 233847 . + . ID=CGI_10011894; scaffold1843 TRF Tandem_Repeat 233616 233847 344 + . . scaffold1844 flankbed promoter 48102 48130 . - . ID=CGI_10006614; scaffold1844 TRF Tandem_Repeat 48102 48130 58 + . . scaffold1844 flankbed promoter 48277 48358 . - . ID=CGI_10006614; scaffold1844 WUBlastX LINE_RTE-X 48277 48708 107 - . . scaffold1845 flankbed promoter 223589 223810 . - . ID=CGI_10012000; scaffold1845 WUBlastX LINE_RTE-X 223589 225502 745 - . . scaffold1845 flankbed promoter 288065 288099 . - . ID=CGI_10012004; scaffold1845 TRF Tandem_Repeat 288065 288099 70 + . . scaffold1847 flankbed promoter 57472 57629 . + . ID=CGI_10003459; scaffold1847 TRF Tandem_Repeat 57472 57629 107 + . . scaffold1847 flankbed promoter 71540 72106 . + . ID=CGI_10003460; scaffold1847 WUBlastX LTR_Gypsy 71540 72106 64 + . . scaffold1847 flankbed promoter 71705 72166 . + . ID=CGI_10003460; scaffold1847 WUBlastX LTR_Gypsy 71705 72166 89 + . . scaffold1849 flankbed promoter 84819 85283 . + . ID=CGI_10015915; scaffold1849 WUBlastX LINE_CR1 84294 85283 99 - . . scaffold1849 flankbed promoter 84819 85475 . + . ID=CGI_10015915; scaffold1849 WUBlastX LINE_CR1 84213 85475 44 - . . scaffold1849 flankbed promoter 84819 85055 . + . ID=CGI_10015915; scaffold1849 WUBlastX LINE_CR1 84309 85055 142 - . . scaffold1850 flankbed promoter 116143 116548 . + . ID=CGI_10009885; scaffold1850 WUBlastX LTR_Gypsy 115532 116548 508 + . . scaffold1850 flankbed promoter 116557 116961 . + . ID=CGI_10009885; scaffold1850 WUBlastX LTR_Gypsy 116557 116961 50 + . . scaffold1850 flankbed promoter 116560 116742 . + . ID=CGI_10009885; scaffold1850 WUBlastX LTR_Gypsy 116560 116742 75 + . . scaffold1850 flankbed promoter 202675 202958 . + . ID=CGI_10009892; scaffold1850 TRF Tandem_Repeat 202675 202958 433 + . . scaffold1851 flankbed promoter 106284 106350 . - . ID=CGI_10005104; scaffold1851 WUBlastX LTR_Copia 106284 106352 20 + . . scaffold1854 flankbed promoter 22522 22555 . - . ID=CGI_10004409; scaffold1854 TRF Tandem_Repeat 22522 22555 59 + . . scaffold1854 flankbed promoter 73221 73279 . - . ID=CGI_10004412; scaffold1854 TRF Tandem_Repeat 73221 73279 111 + . . scaffold1856 flankbed promoter 159611 159621 . - . ID=CGI_10007327; scaffold1856 TRF Tandem_Repeat 159611 160566 1370 + . . scaffold1857 flankbed promoter 355694 355727 . - . ID=CGI_10020202; scaffold1857 TRF Tandem_Repeat 355694 355727 68 + . . scaffold1857 flankbed promoter 356850 356887 . + . ID=CGI_10020206; scaffold1857 TRF Tandem_Repeat 356850 356887 76 + . . scaffold1857 flankbed promoter 426403 426762 . - . ID=CGI_10020209; scaffold1857 WUBlastX DNA_Harbinger 426403 426762 52 - . . scaffold1857 flankbed promoter 426388 426453 . - . ID=CGI_10020209; scaffold1857 WUBlastX DNA_Harbinger 426388 426453 29 - . . scaffold1857 flankbed promoter 426505 426824 . - . ID=CGI_10020209; scaffold1857 WUBlastX DNA_Harbinger 426505 427527 438 - . . scaffold1857 flankbed promoter 596769 597530 . + . ID=CGI_10020223; scaffold1857 WUBlastX LINE_CR1 596769 597530 154 + . . scaffold1858 flankbed promoter 34994 35079 . + . ID=CGI_10010440; scaffold1858 TRF Tandem_Repeat 34994 35079 154 + . . scaffold1858 flankbed promoter 197567 197608 . + . ID=CGI_10010452; scaffold1858 TRF Tandem_Repeat 197567 197608 84 + . . scaffold1858 flankbed promoter 197749 197796 . + . ID=CGI_10010452; scaffold1858 TRF Tandem_Repeat 197749 197796 96 + . . scaffold1858 flankbed promoter 205405 205446 . + . ID=CGI_10010453; scaffold1858 TRF Tandem_Repeat 205405 205446 84 + . . scaffold1858 flankbed promoter 206151 206183 . + . ID=CGI_10010453; scaffold1858 TRF Tandem_Repeat 206151 206183 66 + . . scaffold186 flankbed promoter 22103 22149 . + . ID=CGI_10012601; scaffold186 TRF Tandem_Repeat 22103 22149 94 + . . scaffold186 flankbed promoter 22971 23018 . + . ID=CGI_10012601; scaffold186 WUBlastX DNA_Harbinger 22971 23354 85 + . . scaffold186 flankbed promoter 26264 26656 . + . ID=CGI_10012603; scaffold186 WUBlastX DNA_Kolobok-Hyd 26264 27292 26 + . . scaffold186 flankbed promoter 26381 26437 . + . ID=CGI_10012603; scaffold186 WUBlastX DNA_Kolobok-Hyd 26381 26437 41 + . . scaffold186 flankbed promoter 26567 26656 . + . ID=CGI_10012603; scaffold186 WUBlastX DNA_Kolobok-Hyd 26567 26884 36 + . . scaffold186 flankbed promoter 26833 27292 . + . ID=CGI_10012604; scaffold186 WUBlastX DNA_Kolobok-Hyd 26264 27292 26 + . . scaffold186 flankbed promoter 26833 26884 . + . ID=CGI_10012604; scaffold186 WUBlastX DNA_Kolobok-Hyd 26567 26884 36 + . . scaffold186 flankbed promoter 223691 223876 . + . ID=CGI_10012615; scaffold186 WUBlastX LINE_RTE-X 223691 223876 49 + . . scaffold186 flankbed promoter 317882 317914 . + . ID=CGI_10012619; scaffold186 TRF Tandem_Repeat 317882 317914 66 + . . scaffold1860 flankbed promoter 187127 187177 . - . ID=CGI_10013947; scaffold1860 TRF Tandem_Repeat 187127 187177 102 + . . scaffold1860 flankbed promoter 349948 350115 . + . ID=CGI_10013951; scaffold1860 WUBlastX LTR_DIRS 349948 350115 47 + . . scaffold1860 flankbed promoter 349945 350145 . + . ID=CGI_10013951; scaffold1860 WUBlastX LTR_Gypsy 349945 350145 30 + . . scaffold1861 flankbed promoter 32431 32548 . + . ID=CGI_10004669; scaffold1861 TRF Tandem_Repeat 32376 32548 170 + . . scaffold1861 flankbed promoter 32594 32683 . + . ID=CGI_10004669; scaffold1861 TRF Tandem_Repeat 32594 32683 72 + . . scaffold1861 flankbed promoter 32762 32855 . + . ID=CGI_10004669; scaffold1861 TRF Tandem_Repeat 32762 32855 89 + . . scaffold1862 flankbed promoter 111868 111917 . + . ID=CGI_10021888; scaffold1862 TRF Tandem_Repeat 111868 111917 100 + . . scaffold1862 flankbed promoter 395374 395405 . + . ID=CGI_10021904; scaffold1862 TRF Tandem_Repeat 395374 395405 64 + . . scaffold1862 flankbed promoter 661995 662222 . - . ID=CGI_10021923; scaffold1862 WUBlastX DNA_IS4EU 661995 662222 40 - . . scaffold1863 flankbed promoter 161748 161892 . + . ID=CGI_10016688; scaffold1863 TRF Tandem_Repeat 161166 161892 821 + . . scaffold1864 flankbed promoter 20416 20470 . - . ID=CGI_10004428; scaffold1864 TRF Tandem_Repeat 20416 20470 110 + . . scaffold1865 flankbed promoter 14452 14720 . - . ID=CGI_10013533; scaffold1865 TRF Tandem_Repeat 14452 14720 371 + . . scaffold1865 flankbed promoter 165869 165955 . + . ID=CGI_10013537; scaffold1865 TRF Tandem_Repeat 165869 165955 72 + . . scaffold1865 flankbed promoter 219634 219671 . + . ID=CGI_10013543; scaffold1865 TRF Tandem_Repeat 219634 219671 58 + . . scaffold1865 flankbed promoter 259617 259754 . - . ID=CGI_10013544; scaffold1865 TRF Tandem_Repeat 259617 259754 150 + . . scaffold1865 flankbed promoter 259954 260148 . - . ID=CGI_10013544; scaffold1865 WUBlastX LINE_RTE-BovB 259954 260148 76 + . . scaffold1865 flankbed promoter 259864 260118 . - . ID=CGI_10013544; scaffold1865 WUBlastX LINE_RTE-BovB 259864 260118 79 + . . scaffold1866 flankbed promoter 210533 210583 . - . ID=CGI_10017910; scaffold1866 TRF Tandem_Repeat 210533 210583 75 + . . scaffold1870 flankbed promoter 250666 250893 . - . ID=CGI_10013187; scaffold1870 TRF Tandem_Repeat 250666 250917 164 + . . scaffold1870 flankbed promoter 250720 250893 . - . ID=CGI_10013187; scaffold1870 TRF Tandem_Repeat 250720 250921 154 + . . scaffold1870 flankbed promoter 259959 260011 . - . ID=CGI_10013189; scaffold1870 TRF Tandem_Repeat 259959 260011 106 + . . scaffold1870 flankbed promoter 334167 334609 . - . ID=CGI_10013192; scaffold1870 WUBlastX LTR_DIRS 334167 335105 245 - . . scaffold1870 flankbed promoter 333718 333807 . - . ID=CGI_10013192; scaffold1870 WUBlastX LTR_DIRS 333718 333807 22 - . . scaffold1870 flankbed promoter 333933 334609 . - . ID=CGI_10013192; scaffold1870 WUBlastX LTR_DIRS 333933 334877 184 - . . scaffold1870 flankbed promoter 334104 334609 . - . ID=CGI_10013192; scaffold1870 WUBlastX LTR_DIRS 334104 334964 448 - . . scaffold1871 flankbed promoter 92398 92700 . - . ID=CGI_10007355; scaffold1871 TRF Tandem_Repeat 92398 92700 516 + . . scaffold1871 flankbed promoter 142559 142597 . + . ID=CGI_10007358; scaffold1871 TRF Tandem_Repeat 142559 142597 78 + . . scaffold1871 flankbed promoter 142035 142205 . + . ID=CGI_10007358; scaffold1871 WUBlastX LINE_L2 141756 142205 49 - . . scaffold1872 flankbed promoter 136783 136783 . - . ID=CGI_10007186; scaffold1872 TRF Tandem_Repeat 136783 136819 74 + . . scaffold1873 flankbed promoter 95026 95086 . + . ID=CGI_10009295; scaffold1873 TRF Tandem_Repeat 95026 95086 122 + . . scaffold1874 flankbed promoter 24398 24558 . + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 24398 24558 250 + . . scaffold1874 flankbed promoter 24567 24757 . + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 24567 24757 231 + . . scaffold1874 flankbed promoter 51593 51630 . - . ID=CGI_10011919; scaffold1874 TRF Tandem_Repeat 51593 51630 76 + . . scaffold1874 flankbed promoter 74743 75005 . + . ID=CGI_10011921; scaffold1874 TRF Tandem_Repeat 74743 78048 4142 + . . scaffold1874 flankbed promoter 74746 75005 . + . ID=CGI_10011921; scaffold1874 TRF Tandem_Repeat 74746 78048 4163 + . . scaffold1874 flankbed promoter 218259 218303 . + . ID=CGI_10011931; scaffold1874 TRF Tandem_Repeat 218259 218303 58 + . . scaffold1875 flankbed promoter 22769 22921 . - . ID=CGI_10006625; scaffold1875 WUBlastX DNA_Zator 22658 22921 67 - . . scaffold1875 flankbed promoter 23429 23635 . - . ID=CGI_10006625; scaffold1875 WUBlastX DNA_Zator 23429 23635 57 - . . scaffold1875 flankbed promoter 23709 23768 . - . ID=CGI_10006625; scaffold1875 WUBlastX DNA_Zator 23709 25169 676 - . . scaffold1875 flankbed promoter 24930 25169 . - . ID=CGI_10006626; scaffold1875 WUBlastX DNA_Zator 23709 25169 676 - . . scaffold1875 flankbed promoter 54868 55083 . + . ID=CGI_10006628; scaffold1875 TRF Tandem_Repeat 54768 55083 326 + . . scaffold1875 flankbed promoter 54868 55083 . + . ID=CGI_10006628; scaffold1875 TRF Tandem_Repeat 54768 55083 319 + . . scaffold1876 flankbed promoter 53844 53871 . + . ID=CGI_10004966; scaffold1876 TRF Tandem_Repeat 53844 53871 56 + . . scaffold1878 flankbed promoter 16884 16926 . - . ID=CGI_10005488; scaffold1878 TRF Tandem_Repeat 16884 16926 86 + . . scaffold1878 flankbed promoter 109852 109900 . - . ID=CGI_10005493; scaffold1878 TRF Tandem_Repeat 109852 109900 98 + . . scaffold1878 flankbed promoter 109852 109900 . + . ID=CGI_10005494; scaffold1878 TRF Tandem_Repeat 109852 109900 98 + . . scaffold1879 flankbed promoter 176879 177019 . + . ID=CGI_10007962; scaffold1879 TRF Tandem_Repeat 176879 177019 120 + . . scaffold188 flankbed promoter 111670 111707 . - . ID=CGI_10009313; scaffold188 TRF Tandem_Repeat 111670 111707 76 + . . scaffold1881 flankbed promoter 49642 49857 . - . ID=CGI_10006129; scaffold1881 TRF Tandem_Repeat 49642 49857 131 + . . scaffold1881 flankbed promoter 57731 58110 . - . ID=CGI_10006130; scaffold1881 WUBlastX LINE_L2 57731 58309 231 - . . scaffold1881 flankbed promoter 102922 103052 . + . ID=CGI_10006134; scaffold1881 WUBlastX LINE_RTE-X 101865 103052 516 + . . scaffold1881 flankbed promoter 119879 119905 . + . ID=CGI_10006138; scaffold1881 TRF Tandem_Repeat 119879 119905 54 + . . scaffold1882 flankbed promoter 78565 78927 . + . ID=CGI_10010496; scaffold1882 WUBlastX LTR_Gypsy 78565 78927 44 + . . scaffold1882 flankbed promoter 112056 112111 . - . ID=CGI_10010501; scaffold1882 TRF Tandem_Repeat 112056 112111 103 + . . scaffold1882 flankbed promoter 113918 114285 . + . ID=CGI_10010502; scaffold1882 TRF Tandem_Repeat 113746 114285 468 + . . scaffold1882 flankbed promoter 113918 114281 . + . ID=CGI_10010502; scaffold1882 TRF Tandem_Repeat 113768 114281 546 + . . scaffold1882 flankbed promoter 157068 157140 . + . ID=CGI_10010508; scaffold1882 TRF Tandem_Repeat 157068 157140 146 + . . scaffold1882 flankbed promoter 196522 196564 . + . ID=CGI_10010512; scaffold1882 TRF Tandem_Repeat 196522 196564 86 + . . scaffold1883 flankbed promoter 90932 91064 . + . ID=CGI_10011544; scaffold1883 WUBlastX LINE_L1-Tx1 90288 91064 226 - . . scaffold1883 flankbed promoter 91079 91450 . + . ID=CGI_10011544; scaffold1883 WUBlastX LINE_L1-Tx1 91079 91450 153 - . . scaffold1883 flankbed promoter 91073 91549 . + . ID=CGI_10011544; scaffold1883 WUBlastX LINE_L1 91073 91549 36 - . . scaffold1884 flankbed promoter 22937 22969 . - . ID=CGI_10012006; scaffold1884 TRF Tandem_Repeat 22937 22969 66 + . . scaffold1884 flankbed promoter 86290 86316 . + . ID=CGI_10012010; scaffold1884 TRF Tandem_Repeat 86290 86316 54 + . . scaffold1885 flankbed promoter 179465 179574 . + . ID=CGI_10013899; scaffold1885 TRF Tandem_Repeat 179465 179574 139 + . . scaffold1885 flankbed promoter 179465 179574 . + . ID=CGI_10013899; scaffold1885 TRF Tandem_Repeat 179465 179574 184 + . . scaffold1885 flankbed promoter 259059 259175 . + . ID=CGI_10013903; scaffold1885 WUBlastX DNA_IS4EU 259059 259376 86 + . . scaffold1886 flankbed promoter 103028 103058 . - . ID=CGI_10012885; scaffold1886 TRF Tandem_Repeat 103028 103058 62 + . . scaffold1886 flankbed promoter 144113 144720 . + . ID=CGI_10012887; scaffold1886 WUBlastX LINE_RTE-X 142795 144720 800 - . . scaffold1886 flankbed promoter 144113 145083 . + . ID=CGI_10012887; scaffold1886 WUBlastX LINE_CR1 143407 145083 196 - . . scaffold1886 flankbed promoter 192607 192631 . - . ID=CGI_10012891; scaffold1886 TRF Tandem_Repeat 192607 192631 50 + . . scaffold1888 flankbed promoter 113827 113869 . + . ID=CGI_10013297; scaffold1888 TRF Tandem_Repeat 113827 113869 68 + . . scaffold1888 flankbed promoter 141280 141326 . - . ID=CGI_10013300; scaffold1888 TRF Tandem_Repeat 141280 141326 94 + . . scaffold1888 flankbed promoter 152705 152743 . - . ID=CGI_10013302; scaffold1888 WUBlastX LINE_RTE-X 152705 153001 56 + . . scaffold1888 flankbed promoter 315789 315816 . - . ID=CGI_10013309; scaffold1888 TRF Tandem_Repeat 315789 315816 56 + . . scaffold1888 flankbed promoter 330019 330089 . - . ID=CGI_10013310; scaffold1888 TRF Tandem_Repeat 330019 330089 63 + . . scaffold1889 flankbed promoter 181093 181200 . - . ID=CGI_10019607; scaffold1889 WUBlastX DNA_Academ 181093 181200 25 + . . scaffold1889 flankbed promoter 181084 181210 . - . ID=CGI_10019607; scaffold1889 WUBlastX DNA_Academ 181084 181233 20 + . . scaffold1889 flankbed promoter 180211 181105 . - . ID=CGI_10019607; scaffold1889 WUBlastX DNA_Academ 179864 181105 617 + . . scaffold1889 flankbed promoter 207440 207661 . + . ID=CGI_10019609; scaffold1889 WUBlastX LINE_RTE-X 207440 207661 88 + . . scaffold1889 flankbed promoter 207443 207613 . + . ID=CGI_10019609; scaffold1889 WUBlastX LINE_RTE-X 207443 207613 103 + . . scaffold1889 flankbed promoter 207443 207718 . + . ID=CGI_10019609; scaffold1889 WUBlastX LINE_RTE-X 207443 207718 45 + . . scaffold1889 flankbed promoter 270242 270282 . - . ID=CGI_10019611; scaffold1889 TRF Tandem_Repeat 270242 270282 82 + . . scaffold1889 flankbed promoter 364977 365174 . - . ID=CGI_10019616; scaffold1889 WUBlastX LINE_L1-Tx1 364977 365174 74 + . . scaffold1889 flankbed promoter 365173 365951 . - . ID=CGI_10019616; scaffold1889 WUBlastX LINE_L1-Tx1 365173 366387 135 + . . scaffold189 flankbed promoter 15846 16010 . + . ID=CGI_10018663; scaffold189 TRF Tandem_Repeat 15846 16010 178 + . . scaffold189 flankbed promoter 86242 86288 . - . ID=CGI_10018669; scaffold189 TRF Tandem_Repeat 86242 86288 94 + . . scaffold1890 flankbed promoter 86095 86127 . - . ID=CGI_10012124; scaffold1890 TRF Tandem_Repeat 86095 86127 66 + . . scaffold1890 flankbed promoter 273286 273334 . - . ID=CGI_10012132; scaffold1890 TRF Tandem_Repeat 273286 273334 98 + . . scaffold1890 flankbed promoter 283196 283248 . - . ID=CGI_10012133; scaffold1890 TRF Tandem_Repeat 283196 283248 63 + . . scaffold1890 flankbed promoter 310155 310188 . - . ID=CGI_10012135; scaffold1890 TRF Tandem_Repeat 310155 310188 68 + . . scaffold1891 flankbed promoter 157733 157736 . + . ID=CGI_10008739; scaffold1891 TRF Tandem_Repeat 157705 157736 64 + . . scaffold1891 flankbed promoter 165586 165651 . - . ID=CGI_10008740; scaffold1891 WUBlastX LTR_Gypsy 165586 165651 38 - . . scaffold1891 flankbed promoter 165633 166074 . - . ID=CGI_10008740; scaffold1891 WUBlastX LTR_Gypsy 165633 169208 1983 - . . scaffold1891 flankbed promoter 165379 165429 . - . ID=CGI_10008740; scaffold1891 WUBlastX LTR_Copia 165379 165429 21 - . . scaffold1891 flankbed promoter 165547 165666 . - . ID=CGI_10008740; scaffold1891 WUBlastX LTR_Gypsy 165547 165666 28 - . . scaffold1891 flankbed promoter 165451 165633 . - . ID=CGI_10008740; scaffold1891 WUBlastX LTR_Gypsy 165451 165633 22 - . . scaffold1891 flankbed promoter 165633 166074 . - . ID=CGI_10008740; scaffold1891 WUBlastX LTR_Gypsy-Cigr 165633 168368 2035 - . . scaffold1891 flankbed promoter 196031 196342 . + . ID=CGI_10008743; scaffold1891 WUBlastX DNA_TcMar-Tc1 196031 196342 200 + . . scaffold1891 flankbed promoter 196028 196677 . + . ID=CGI_10008743; scaffold1891 WUBlastX DNA_TcMar-Tc1 195934 196677 135 + . . scaffold1892 flankbed promoter 183913 184036 . - . ID=CGI_10011316; scaffold1892 WUBlastX LINE_Penelope 183913 184338 26 - . . scaffold1892 flankbed promoter 191193 191416 . - . ID=CGI_10011317; scaffold1892 TRF Tandem_Repeat 191193 191416 203 + . . scaffold1892 flankbed promoter 209819 209867 . - . ID=CGI_10011319; scaffold1892 TRF Tandem_Repeat 209819 209867 98 + . . scaffold1892 flankbed promoter 209920 209954 . - . ID=CGI_10011319; scaffold1892 TRF Tandem_Repeat 209920 209954 70 + . . scaffold1892 flankbed promoter 286582 286710 . - . ID=CGI_10011321; scaffold1892 WUBlastX LINE_L2 286582 287169 174 + . . scaffold1892 flankbed promoter 286423 286710 . - . ID=CGI_10011321; scaffold1892 WUBlastX LINE_L2 286423 287139 102 + . . scaffold1893 flankbed promoter 120061 120122 . - . ID=CGI_10008856; scaffold1893 TRF Tandem_Repeat 120061 120122 124 + . . scaffold1894 flankbed promoter 213616 213663 . + . ID=CGI_10013339; scaffold1894 TRF Tandem_Repeat 213616 213663 60 + . . scaffold1895 flankbed promoter 78949 79038 . + . ID=CGI_10010976; scaffold1895 TRF Tandem_Repeat 78949 79038 58 + . . scaffold1895 flankbed promoter 200185 200214 . + . ID=CGI_10010986; scaffold1895 TRF Tandem_Repeat 200185 200214 51 + . . scaffold1896 flankbed promoter 232487 232534 . - . ID=CGI_10019637; scaffold1896 TRF Tandem_Repeat 232487 232534 96 + . . scaffold1896 flankbed promoter 274503 275171 . + . ID=CGI_10019638; scaffold1896 TRF Tandem_Repeat 274134 275171 1722 + . . scaffold1896 flankbed promoter 274503 275171 . + . ID=CGI_10019638; scaffold1896 TRF Tandem_Repeat 274134 275171 1740 + . . scaffold1896 flankbed promoter 415621 416263 . - . ID=CGI_10019650; scaffold1896 WUBlastX LTR_Gypsy 415621 418941 1762 - . . scaffold1896 flankbed promoter 415327 416263 . - . ID=CGI_10019650; scaffold1896 WUBlastX LTR_Gypsy 415327 416907 479 - . . scaffold1896 flankbed promoter 415579 416263 . - . ID=CGI_10019650; scaffold1896 WUBlastX LTR_Gypsy-Cigr 415579 418395 1948 - . . scaffold1896 flankbed promoter 482767 482898 . + . ID=CGI_10019652; scaffold1896 WUBlastX LINE_L1 482767 482898 24 + . . scaffold1896 flankbed promoter 482653 482832 . + . ID=CGI_10019652; scaffold1896 WUBlastX LINE_RTE-BovB 482653 482832 25 + . . scaffold1896 flankbed promoter 481993 482626 . + . ID=CGI_10019652; scaffold1896 WUBlastX LINE_RTE-BovB 481568 482626 824 + . . scaffold1896 flankbed promoter 482614 482775 . + . ID=CGI_10019652; scaffold1896 WUBlastX LINE_RTE-BovB 482614 482775 97 + . . scaffold1896 flankbed promoter 482024 482734 . + . ID=CGI_10019652; scaffold1896 WUBlastX LINE_RTE-BovB 482024 482734 277 + . . scaffold1896 flankbed promoter 481993 482242 . + . ID=CGI_10019652; scaffold1896 WUBlastX LINE_L2 481418 482242 68 + . . scaffold1897 flankbed promoter 118181 118212 . - . ID=CGI_10020906; scaffold1897 TRF Tandem_Repeat 118181 118212 64 + . . scaffold1897 flankbed promoter 325426 325464 . + . ID=CGI_10020924; scaffold1897 TRF Tandem_Repeat 325426 325464 78 + . . scaffold1897 flankbed promoter 333836 333842 . + . ID=CGI_10020925; scaffold1897 TRF Tandem_Repeat 333814 333842 58 + . . scaffold1897 flankbed promoter 448283 448355 . + . ID=CGI_10020932; scaffold1897 TRF Tandem_Repeat 448283 448355 137 + . . scaffold1897 flankbed promoter 525578 525612 . + . ID=CGI_10020936; scaffold1897 TRF Tandem_Repeat 525578 525612 70 + . . scaffold1897 flankbed promoter 623839 623884 . - . ID=CGI_10020942; scaffold1897 TRF Tandem_Repeat 623839 623884 92 + . . scaffold1898 flankbed promoter 34312 34355 . - . ID=CGI_10012204; scaffold1898 TRF Tandem_Repeat 34312 34355 88 + . . scaffold1899 flankbed promoter 276653 276710 . - . ID=CGI_10013620; scaffold1899 TRF Tandem_Repeat 276653 276710 109 + . . scaffold1899 flankbed promoter 305921 305962 . - . ID=CGI_10013622; scaffold1899 TRF Tandem_Repeat 305921 305962 75 + . . scaffold1900 flankbed promoter 104920 104975 . - . ID=CGI_10017328; scaffold1900 TRF Tandem_Repeat 104920 104975 112 + . . scaffold1900 flankbed promoter 105564 105890 . - . ID=CGI_10017328; scaffold1900 WUBlastX LINE_RTE-X 105564 105890 33 - . . scaffold1900 flankbed promoter 281404 281420 . - . ID=CGI_10017340; scaffold1900 TRF Tandem_Repeat 281404 282014 476 + . . scaffold1900 flankbed promoter 296985 297200 . + . ID=CGI_10017342; scaffold1900 WUBlastX DNA_Harbinger 296985 297200 24 + . . scaffold1900 flankbed promoter 297202 297306 . + . ID=CGI_10017342; scaffold1900 WUBlastX DNA_Harbinger 297202 297306 61 + . . scaffold1900 flankbed promoter 375389 375946 . + . ID=CGI_10017346; scaffold1900 WUBlastX LINE_RTE-X 374990 375946 166 - . . scaffold1900 flankbed promoter 375389 375835 . + . ID=CGI_10017346; scaffold1900 WUBlastX LINE_CR1-L2 374765 375835 82 - . . scaffold1900 flankbed promoter 375389 375832 . + . ID=CGI_10017346; scaffold1900 WUBlastX LINE_RTE-X 375056 375832 185 - . . scaffold1900 flankbed promoter 406729 407477 . + . ID=CGI_10017348; scaffold1900 WUBlastX LTR_Gypsy-Troyk 406458 407477 904 + . . scaffold1900 flankbed promoter 407441 407728 . + . ID=CGI_10017348; scaffold1900 WUBlastX LTR_Gypsy-Troyk 407441 407986 118 + . . scaffold1900 flankbed promoter 461178 461207 . + . ID=CGI_10017352; scaffold1900 TRF Tandem_Repeat 461178 461207 60 + . . scaffold1901 flankbed promoter 4 257 . + . ID=CGI_10015543; scaffold1901 TRF Tandem_Repeat 4 257 114 + . . scaffold1901 flankbed promoter 93900 93956 . - . ID=CGI_10015546; scaffold1901 TRF Tandem_Repeat 93900 93956 114 + . . scaffold1901 flankbed promoter 128564 128604 . - . ID=CGI_10015548; scaffold1901 TRF Tandem_Repeat 128564 128616 90 + . . scaffold1901 flankbed promoter 351806 352087 . + . ID=CGI_10015561; scaffold1901 WUBlastX LINE_R2-Hero 351170 352087 316 - . . scaffold191 flankbed promoter 19676 19695 . + . ID=CGI_10022408; scaffold191 WUBlastX RC_Helitron 19198 19695 181 + . . scaffold191 flankbed promoter 210169 210379 . - . ID=CGI_10022416; scaffold191 WUBlastX LINE_RTE-X 210169 210432 189 - . . scaffold191 flankbed promoter 210112 210379 . - . ID=CGI_10022416; scaffold191 WUBlastX LINE_RTE-BovB 210112 210435 110 - . . scaffold192 flankbed promoter 26297 26527 . - . ID=CGI_10023697; scaffold192 WUBlastX DNA_Sola 25403 26527 486 - . . scaffold192 flankbed promoter 457454 457495 . - . ID=CGI_10023717; scaffold192 TRF Tandem_Repeat 457454 457495 50 + . . scaffold193 flankbed promoter 79864 79902 . - . ID=CGI_10015223; scaffold193 TRF Tandem_Repeat 79864 79902 53 + . . scaffold193 flankbed promoter 110910 110955 . + . ID=CGI_10015225; scaffold193 TRF Tandem_Repeat 110910 110955 92 + . . scaffold193 flankbed promoter 200020 200075 . - . ID=CGI_10015228; scaffold193 TRF Tandem_Repeat 200020 200080 106 + . . scaffold193 flankbed promoter 335699 335769 . - . ID=CGI_10015237; scaffold193 TRF Tandem_Repeat 335699 335769 142 + . . scaffold193 flankbed promoter 375947 376000 . + . ID=CGI_10015241; scaffold193 TRF Tandem_Repeat 375947 376000 108 + . . scaffold193 flankbed promoter 375294 375906 . + . ID=CGI_10015241; scaffold193 WUBlastX LINE_CR1 374647 375906 747 - . . scaffold193 flankbed promoter 396192 396333 . + . ID=CGI_10015243; scaffold193 TRF Tandem_Repeat 395761 396333 452 + . . scaffold193 flankbed promoter 396192 396333 . + . ID=CGI_10015243; scaffold193 TRF Tandem_Repeat 395759 396333 502 + . . scaffold193 flankbed promoter 396192 396465 . + . ID=CGI_10015243; scaffold193 TRF Tandem_Repeat 395832 396465 289 + . . scaffold193 flankbed promoter 409761 409824 . - . ID=CGI_10015246; scaffold193 TRF Tandem_Repeat 409761 409824 128 + . . scaffold193 flankbed promoter 423278 423414 . - . ID=CGI_10015248; scaffold193 TRF Tandem_Repeat 423278 423446 74 + . . scaffold194 flankbed promoter 207625 207661 . - . ID=CGI_10011067; scaffold194 TRF Tandem_Repeat 207625 207661 74 + . . scaffold194 flankbed promoter 207070 207129 . - . ID=CGI_10011067; scaffold194 WUBlastX DNA_Sola 206500 207129 68 - . . scaffold198 flankbed promoter 323892 323923 . - . ID=CGI_10027804; scaffold198 TRF Tandem_Repeat 323892 323923 64 + . . scaffold198 flankbed promoter 576379 576440 . + . ID=CGI_10027816; scaffold198 TRF Tandem_Repeat 576379 576440 115 + . . scaffold198 flankbed promoter 829941 830088 . + . ID=CGI_10027825; scaffold198 TRF Tandem_Repeat 829941 830088 79 + . . scaffold198 flankbed promoter 830017 830178 . + . ID=CGI_10027825; scaffold198 TRF Tandem_Repeat 830017 830178 68 + . . scaffold198 flankbed promoter 829874 830087 . + . ID=CGI_10027825; scaffold198 TRF Tandem_Repeat 829874 830087 101 + . . scaffold198 flankbed promoter 860842 860878 . - . ID=CGI_10027828; scaffold198 TRF Tandem_Repeat 860842 860878 74 + . . scaffold198 flankbed promoter 926383 926419 . - . ID=CGI_10027836; scaffold198 TRF Tandem_Repeat 926383 926419 60 + . . scaffold198 flankbed promoter 1020577 1020642 . - . ID=CGI_10027840; scaffold198 WUBlastX LINE_CR1-L2 1020577 1020642 34 - . . scaffold198 flankbed promoter 1020650 1020841 . - . ID=CGI_10027840; scaffold198 WUBlastX LINE_CR1-L2 1020650 1020841 88 - . . scaffold198 flankbed promoter 1025784 1025825 . + . ID=CGI_10027841; scaffold198 TRF Tandem_Repeat 1025741 1025825 125 + . . scaffold198 flankbed promoter 1075421 1075509 . - . ID=CGI_10027845; scaffold198 TRF Tandem_Repeat 1075421 1075509 108 + . . scaffold198 flankbed promoter 1154698 1154733 . - . ID=CGI_10027849; scaffold198 TRF Tandem_Repeat 1154698 1154733 54 + . . scaffold198 flankbed promoter 1154698 1154733 . + . ID=CGI_10027850; scaffold198 TRF Tandem_Repeat 1154698 1154733 54 + . . scaffold198 flankbed promoter 1224145 1224590 . - . ID=CGI_10027852; scaffold198 WUBlastX LINE_RTE-X 1224145 1225695 590 - . . scaffold20 flankbed promoter 35152 35224 . - . ID=CGI_10023558; scaffold20 TRF Tandem_Repeat 35152 35224 146 + . . scaffold20 flankbed promoter 43137 43137 . + . ID=CGI_10023559; scaffold20 WUBlastX LTR_Gypsy-Cigr 42847 43137 139 + . . scaffold20 flankbed promoter 43137 43137 . + . ID=CGI_10023559; scaffold20 WUBlastX LTR_Gypsy-Cigr 42916 43137 143 + . . scaffold20 flankbed promoter 43137 43140 . + . ID=CGI_10023559; scaffold20 WUBlastX LTR_Gypsy 42793 43140 94 + . . scaffold20 flankbed promoter 43158 43622 . + . ID=CGI_10023559; scaffold20 WUBlastX LTR_Gypsy 43158 43622 93 + . . scaffold20 flankbed promoter 43158 43412 . + . ID=CGI_10023559; scaffold20 WUBlastX LTR_Gypsy-Cigr 43158 43412 118 + . . scaffold20 flankbed promoter 81256 81447 . - . ID=CGI_10023561; scaffold20 WUBlastX DNA_Harbinger 81217 81447 82 - . . scaffold20 flankbed promoter 81375 81578 . - . ID=CGI_10023561; scaffold20 WUBlastX DNA_Harbinger 81375 81578 54 - . . scaffold20 flankbed promoter 310667 310701 . + . ID=CGI_10023573; scaffold20 TRF Tandem_Repeat 310667 310701 70 + . . scaffold20 flankbed promoter 731774 731854 . - . ID=CGI_10023595; scaffold20 WUBlastX LTR_Ngaro 731759 731854 24 - . . scaffold20 flankbed promoter 753042 753494 . - . ID=CGI_10023596; scaffold20 WUBlastX LTR_Gypsy 752667 753494 84 - . . scaffold20 flankbed promoter 753042 753179 . - . ID=CGI_10023596; scaffold20 WUBlastX LTR_Gypsy 752466 753179 150 - . . scaffold20 flankbed promoter 753042 753161 . - . ID=CGI_10023596; scaffold20 WUBlastX LTR_Gypsy 752574 753161 195 - . . scaffold20 flankbed promoter 802711 802787 . + . ID=CGI_10023599; scaffold20 TRF Tandem_Repeat 802711 802787 92 + . . scaffold20 flankbed promoter 802732 802795 . + . ID=CGI_10023599; scaffold20 TRF Tandem_Repeat 802732 802795 76 + . . scaffold203 flankbed promoter 61803 62735 . + . ID=CGI_10021062; scaffold203 WUBlastX LTR_Ngaro 61803 62735 365 - . . scaffold203 flankbed promoter 73261 73302 . + . ID=CGI_10021063; scaffold203 TRF Tandem_Repeat 73261 73302 84 + . . scaffold203 flankbed promoter 85558 85609 . + . ID=CGI_10021064; scaffold203 TRF Tandem_Repeat 85558 85609 88 + . . scaffold203 flankbed promoter 151731 152174 . + . ID=CGI_10021066; scaffold203 WUBlastX LTR_Ngaro 151731 152174 219 + . . scaffold203 flankbed promoter 151341 152150 . + . ID=CGI_10021066; scaffold203 WUBlastX LTR_Ngaro 151308 152150 97 + . . scaffold203 flankbed promoter 151638 152270 . + . ID=CGI_10021066; scaffold203 WUBlastX LTR_Ngaro 151638 152270 61 + . . scaffold203 flankbed promoter 421496 421553 . + . ID=CGI_10021072; scaffold203 TRF Tandem_Repeat 421496 421553 72 + . . scaffold203 flankbed promoter 545940 545975 . - . ID=CGI_10021077; scaffold203 TRF Tandem_Repeat 545940 545975 72 + . . scaffold203 flankbed promoter 599389 599480 . + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 599389 599480 80 + . . scaffold203 flankbed promoter 599394 599494 . + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 599394 599494 67 + . . scaffold204 flankbed promoter 3078 3108 . - . ID=CGI_10026085; scaffold204 TRF Tandem_Repeat 3078 3108 55 + . . scaffold204 flankbed promoter 3082 3145 . - . ID=CGI_10026085; scaffold204 TRF Tandem_Repeat 3082 3145 58 + . . scaffold204 flankbed promoter 377797 378104 . + . ID=CGI_10026105; scaffold204 WUBlastX LINE_L1-Tx1 374403 378104 1145 + . . scaffold204 flankbed promoter 432143 432489 . - . ID=CGI_10026107; scaffold204 WUBlastX LINE_CR1 432143 432697 145 - . . scaffold204 flankbed promoter 432143 432697 . - . ID=CGI_10026108; scaffold204 WUBlastX LINE_CR1 432143 432697 145 - . . scaffold204 flankbed promoter 746258 746349 . - . ID=CGI_10026129; scaffold204 TRF Tandem_Repeat 746258 746349 107 + . . scaffold204 flankbed promoter 746426 746585 . - . ID=CGI_10026129; scaffold204 TRF Tandem_Repeat 746426 746585 187 + . . scaffold204 flankbed promoter 746815 746835 . - . ID=CGI_10026129; scaffold204 TRF Tandem_Repeat 746815 746908 100 + . . scaffold204 flankbed promoter 755228 756035 . + . ID=CGI_10026130; scaffold204 WUBlastX LTR_Gypsy 754512 756035 368 + . . scaffold204 flankbed promoter 755901 756059 . + . ID=CGI_10026130; scaffold204 WUBlastX LTR_Gypsy 755901 756059 23 + . . scaffold204 flankbed promoter 936422 936469 . + . ID=CGI_10026139; scaffold204 TRF Tandem_Repeat 936422 936469 96 + . . scaffold206 flankbed promoter 132074 132139 . - . ID=CGI_10011374; scaffold206 TRF Tandem_Repeat 132074 132139 132 + . . scaffold206 flankbed promoter 182563 182588 . + . ID=CGI_10011380; scaffold206 WUBlastX LTR_ERV1 182142 182588 52 - . . scaffold206 flankbed promoter 274682 275104 . + . ID=CGI_10011386; scaffold206 WUBlastX LINE_RTE-X 274682 275104 52 - . . scaffold206 flankbed promoter 274766 275128 . + . ID=CGI_10011386; scaffold206 WUBlastX LINE_RTE-X 274766 275128 122 - . . scaffold206 flankbed promoter 274841 275128 . + . ID=CGI_10011386; scaffold206 WUBlastX LINE_RTE-X 274841 275128 135 - . . scaffold207 flankbed promoter 10859 10882 . + . ID=CGI_10001601; scaffold207 TRF Tandem_Repeat 10841 10882 84 + . . scaffold207 flankbed promoter 11110 11152 . + . ID=CGI_10001601; scaffold207 TRF Tandem_Repeat 11110 11152 86 + . . scaffold208 flankbed promoter 114024 114086 . - . ID=CGI_10010025; scaffold208 TRF Tandem_Repeat 114024 114086 81 + . . scaffold208 flankbed promoter 181548 181604 . - . ID=CGI_10010033; scaffold208 TRF Tandem_Repeat 181548 181604 114 + . . scaffold208 flankbed promoter 251200 251390 . - . ID=CGI_10010036; scaffold208 TRF Tandem_Repeat 251200 251390 192 + . . scaffold209 flankbed promoter 123877 124206 . - . ID=CGI_10013482; scaffold209 TRF Tandem_Repeat 123877 124206 349 + . . scaffold209 flankbed promoter 201772 202235 . + . ID=CGI_10013491; scaffold209 TRF Tandem_Repeat 201237 202235 1226 + . . scaffold209 flankbed promoter 228915 229103 . + . ID=CGI_10013492; scaffold209 WUBlastX LTR_Pao 228915 229103 37 + . . scaffold209 flankbed promoter 228972 229103 . + . ID=CGI_10013492; scaffold209 WUBlastX LTR_Pao 228972 229103 43 + . . scaffold210 flankbed promoter 374771 374851 . - . ID=CGI_10015900; scaffold210 TRF Tandem_Repeat 374771 374851 144 + . . scaffold210 flankbed promoter 426192 426297 . - . ID=CGI_10015906; scaffold210 WUBlastX DNA_Crypton 426192 426665 85 + . . scaffold211 flankbed promoter 569598 569837 . - . ID=CGI_10026955; scaffold211 TRF Tandem_Repeat 569598 569837 239 + . . scaffold211 flankbed promoter 569596 569837 . - . ID=CGI_10026955; scaffold211 TRF Tandem_Repeat 569596 569837 281 + . . scaffold211 flankbed promoter 569596 569828 . - . ID=CGI_10026955; scaffold211 TRF Tandem_Repeat 569596 569828 215 + . . scaffold211 flankbed promoter 669190 669555 . - . ID=CGI_10026958; scaffold211 WUBlastX LTR_Gypsy-Cigr 669190 670461 296 - . . scaffold211 flankbed promoter 668693 668872 . - . ID=CGI_10026958; scaffold211 WUBlastX LTR_Copia 668693 668872 24 - . . scaffold211 flankbed promoter 972984 973027 . - . ID=CGI_10026971; scaffold211 TRF Tandem_Repeat 972984 973027 70 + . . scaffold211 flankbed promoter 1167334 1167375 . - . ID=CGI_10026985; scaffold211 TRF Tandem_Repeat 1167334 1167375 84 + . . scaffold211 flankbed promoter 1196185 1196586 . - . ID=CGI_10026987; scaffold211 TRF Tandem_Repeat 1196185 1196818 920 + . . scaffold211 flankbed promoter 1196185 1196586 . - . ID=CGI_10026987; scaffold211 TRF Tandem_Repeat 1196185 1196805 966 + . . scaffold211 flankbed promoter 1196783 1196818 . + . ID=CGI_10026988; scaffold211 TRF Tandem_Repeat 1196185 1196818 920 + . . scaffold211 flankbed promoter 1196783 1196805 . + . ID=CGI_10026988; scaffold211 TRF Tandem_Repeat 1196185 1196805 966 + . . scaffold211 flankbed promoter 1202191 1202234 . + . ID=CGI_10026989; scaffold211 TRF Tandem_Repeat 1202191 1202234 65 + . . scaffold211 flankbed promoter 1202191 1202234 . + . ID=CGI_10026989; scaffold211 TRF Tandem_Repeat 1202191 1202234 65 + . . scaffold211 flankbed promoter 1202476 1202533 . + . ID=CGI_10026989; scaffold211 TRF Tandem_Repeat 1202476 1202533 116 + . . scaffold211 flankbed promoter 1226908 1226951 . - . ID=CGI_10026991; scaffold211 TRF Tandem_Repeat 1226908 1226951 54 + . . scaffold211 flankbed promoter 1227077 1227181 . - . ID=CGI_10026991; scaffold211 TRF Tandem_Repeat 1227077 1227181 104 + . . scaffold211 flankbed promoter 1227077 1227181 . - . ID=CGI_10026991; scaffold211 TRF Tandem_Repeat 1227077 1227181 104 + . . scaffold211 flankbed promoter 1226908 1226951 . + . ID=CGI_10026992; scaffold211 TRF Tandem_Repeat 1226908 1226951 54 + . . scaffold211 flankbed promoter 1227077 1227181 . + . ID=CGI_10026992; scaffold211 TRF Tandem_Repeat 1227077 1227181 104 + . . scaffold211 flankbed promoter 1227077 1227181 . + . ID=CGI_10026992; scaffold211 TRF Tandem_Repeat 1227077 1227181 104 + . . scaffold215 flankbed promoter 91685 91756 . + . ID=CGI_10006641; scaffold215 TRF Tandem_Repeat 91685 91756 117 + . . scaffold215 flankbed promoter 108419 109032 . + . ID=CGI_10006643; scaffold215 TRF Tandem_Repeat 107595 109032 2073 + . . scaffold215 flankbed promoter 127263 127802 . + . ID=CGI_10006646; scaffold215 TRF Tandem_Repeat 123835 127802 4657 + . . scaffold218 flankbed promoter 43189 43384 . - . ID=CGI_10007761; scaffold218 TRF Tandem_Repeat 43189 43384 114 + . . scaffold219 flankbed promoter 30379 30421 . + . ID=CGI_10016613; scaffold219 TRF Tandem_Repeat 30379 30421 86 + . . scaffold219 flankbed promoter 168181 168540 . - . ID=CGI_10016617; scaffold219 WUBlastX LINE_L1-Tx1 168181 168540 98 - . . scaffold219 flankbed promoter 168103 168534 . - . ID=CGI_10016617; scaffold219 WUBlastX LINE_L1-Tx1 168103 168534 80 - . . scaffold219 flankbed promoter 221236 221254 . + . ID=CGI_10016620; scaffold219 TRF Tandem_Repeat 221187 221254 91 + . . scaffold219 flankbed promoter 269408 269463 . - . ID=CGI_10016625; scaffold219 TRF Tandem_Repeat 269408 269463 112 + . . scaffold22 flankbed promoter 202798 202834 . + . ID=CGI_10028835; scaffold22 WUBlastX DNA_hAT-Tip100 202505 202834 80 + . . scaffold22 flankbed promoter 370375 370464 . - . ID=CGI_10028848; scaffold22 TRF Tandem_Repeat 370375 370464 58 + . . scaffold22 flankbed promoter 404458 404506 . - . ID=CGI_10028850; scaffold22 TRF Tandem_Repeat 404458 404506 98 + . . scaffold22 flankbed promoter 462497 462543 . - . ID=CGI_10028854; scaffold22 TRF Tandem_Repeat 462497 462543 94 + . . scaffold22 flankbed promoter 591709 592503 . + . ID=CGI_10028866; scaffold22 TRF Tandem_Repeat 591609 592503 1047 + . . scaffold22 flankbed promoter 591709 592508 . + . ID=CGI_10028866; scaffold22 TRF Tandem_Repeat 591609 592508 1321 + . . scaffold22 flankbed promoter 746848 746895 . - . ID=CGI_10028873; scaffold22 TRF Tandem_Repeat 746848 746895 96 + . . scaffold22 flankbed promoter 826391 826439 . + . ID=CGI_10028875; scaffold22 TRF Tandem_Repeat 826391 826439 98 + . . scaffold22 flankbed promoter 852040 852090 . + . ID=CGI_10028880; scaffold22 TRF Tandem_Repeat 852040 852090 102 + . . scaffold22 flankbed promoter 981027 981071 . - . ID=CGI_10028888; scaffold22 TRF Tandem_Repeat 981027 981071 90 + . . scaffold22 flankbed promoter 1067165 1067237 . + . ID=CGI_10028894; scaffold22 TRF Tandem_Repeat 1067165 1067237 76 + . . scaffold22 flankbed promoter 1072156 1072617 . + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1072156 1072617 52 + . . scaffold22 flankbed promoter 1072255 1072635 . + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1072255 1072635 53 + . . scaffold22 flankbed promoter 1072258 1072725 . + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1072258 1072725 32 + . . scaffold22 flankbed promoter 1092857 1092900 . - . ID=CGI_10028897; scaffold22 TRF Tandem_Repeat 1092857 1092900 61 + . . scaffold22 flankbed promoter 1093123 1093174 . - . ID=CGI_10028897; scaffold22 TRF Tandem_Repeat 1093123 1093174 104 + . . scaffold22 flankbed promoter 1198470 1198524 . + . ID=CGI_10028901; scaffold22 TRF Tandem_Repeat 1198470 1198524 83 + . . scaffold22 flankbed promoter 1214155 1214271 . + . ID=CGI_10028902; scaffold22 TRF Tandem_Repeat 1214155 1214271 135 + . . scaffold22 flankbed promoter 1267007 1267060 . + . ID=CGI_10028904; scaffold22 TRF Tandem_Repeat 1267007 1267060 108 + . . scaffold22 flankbed promoter 1328289 1328583 . + . ID=CGI_10028907; scaffold22 TRF Tandem_Repeat 1328289 1328583 222 + . . scaffold22 flankbed promoter 1328289 1328583 . + . ID=CGI_10028907; scaffold22 TRF Tandem_Repeat 1328289 1328583 288 + . . scaffold22 flankbed promoter 1368741 1368765 . + . ID=CGI_10028909; scaffold22 TRF Tandem_Repeat 1368741 1368765 50 + . . scaffold22 flankbed promoter 1427259 1427322 . - . ID=CGI_10028913; scaffold22 TRF Tandem_Repeat 1427259 1427322 110 + . . scaffold22 flankbed promoter 1427535 1427603 . - . ID=CGI_10028913; scaffold22 TRF Tandem_Repeat 1427535 1427603 138 + . . scaffold22 flankbed promoter 1740068 1740168 . + . ID=CGI_10028931; scaffold22 TRF Tandem_Repeat 1740068 1740168 121 + . . scaffold22 flankbed promoter 1863119 1863346 . + . ID=CGI_10028937; scaffold22 WUBlastX DNA_TcMar-Fot1 1863119 1863442 65 + . . scaffold22 flankbed promoter 1863538 1863759 . + . ID=CGI_10028938; scaffold22 WUBlastX DNA_TcMar-Fot1 1863538 1863921 48 + . . scaffold22 flankbed promoter 1863119 1863442 . + . ID=CGI_10028938; scaffold22 WUBlastX DNA_TcMar-Fot1 1863119 1863442 65 + . . scaffold221 flankbed promoter 65704 65877 . + . ID=CGI_10008343; scaffold221 WUBlastX DNA_IS4EU 65704 65877 67 - . . scaffold221 flankbed promoter 65643 65704 . + . ID=CGI_10008343; scaffold221 WUBlastX DNA_IS4EU 65528 65704 36 - . . scaffold221 flankbed promoter 80426 80638 . - . ID=CGI_10008344; scaffold221 WUBlastX DNA_Harbinger 80246 80638 140 - . . scaffold221 flankbed promoter 82757 82987 . + . ID=CGI_10008345; scaffold221 WUBlastX LTR_Gypsy 82757 83215 66 + . . scaffold221 flankbed promoter 82832 82987 . + . ID=CGI_10008345; scaffold221 WUBlastX LTR_Copia 82832 83680 39 + . . scaffold221 flankbed promoter 82832 82987 . + . ID=CGI_10008345; scaffold221 WUBlastX LTR_Gypsy 82832 83374 63 + . . scaffold221 flankbed promoter 195185 195288 . + . ID=CGI_10008349; scaffold221 TRF Tandem_Repeat 195185 195288 59 + . . scaffold223 flankbed promoter 237159 237193 . - . ID=CGI_10012919; scaffold223 TRF Tandem_Repeat 237159 237193 70 + . . scaffold223 flankbed promoter 237209 237445 . - . ID=CGI_10012919; scaffold223 WUBlastX LINE_RTE-BovB 237209 237445 90 + . . scaffold226 flankbed promoter 97401 97438 . - . ID=CGI_10025341; scaffold226 TRF Tandem_Repeat 97401 97438 76 + . . scaffold226 flankbed promoter 121983 122009 . - . ID=CGI_10025342; scaffold226 TRF Tandem_Repeat 121983 122009 54 + . . scaffold226 flankbed promoter 252331 252423 . - . ID=CGI_10025347; scaffold226 WUBlastX LTR_Gypsy 252331 252423 22 - . . scaffold226 flankbed promoter 252353 252816 . - . ID=CGI_10025347; scaffold226 WUBlastX LTR_Ngaro 252353 253234 388 - . . scaffold226 flankbed promoter 251817 251996 . - . ID=CGI_10025347; scaffold226 WUBlastX LINE_RTE-X 251619 251996 43 - . . scaffold226 flankbed promoter 361745 361810 . + . ID=CGI_10025352; scaffold226 TRF Tandem_Repeat 361745 361810 114 + . . scaffold226 flankbed promoter 740975 741271 . + . ID=CGI_10025372; scaffold226 WUBlastX LINE_RTE-X 740975 741271 105 + . . scaffold226 flankbed promoter 826923 826965 . + . ID=CGI_10025380; scaffold226 TRF Tandem_Repeat 826923 826965 77 + . . scaffold226 flankbed promoter 935792 935938 . + . ID=CGI_10025389; scaffold226 WUBlastX LINE_RTE-X 935792 935938 20 - . . scaffold226 flankbed promoter 1034793 1034830 . - . ID=CGI_10025397; scaffold226 TRF Tandem_Repeat 1034793 1034830 51 + . . scaffold226 flankbed promoter 1034794 1034856 . - . ID=CGI_10025397; scaffold226 TRF Tandem_Repeat 1034794 1034856 56 + . . scaffold227 flankbed promoter 33668 33699 . - . ID=CGI_10015803; scaffold227 TRF Tandem_Repeat 33668 33699 64 + . . scaffold227 flankbed promoter 106379 106446 . + . ID=CGI_10015811; scaffold227 TRF Tandem_Repeat 106379 106446 136 + . . scaffold227 flankbed promoter 200605 200649 . + . ID=CGI_10015819; scaffold227 TRF Tandem_Repeat 200605 200649 90 + . . scaffold227 flankbed promoter 216358 216486 . - . ID=CGI_10015822; scaffold227 TRF Tandem_Repeat 216358 216486 86 + . . scaffold227 flankbed promoter 216395 216486 . - . ID=CGI_10015822; scaffold227 TRF Tandem_Repeat 216395 216486 121 + . . scaffold227 flankbed promoter 391226 391370 . - . ID=CGI_10015829; scaffold227 TRF Tandem_Repeat 391226 391370 109 + . . scaffold227 flankbed promoter 391259 391365 . - . ID=CGI_10015829; scaffold227 TRF Tandem_Repeat 391259 391365 127 + . . scaffold230 flankbed promoter 144575 144641 . - . ID=CGI_10011251; scaffold230 TRF Tandem_Repeat 144575 144641 80 + . . scaffold232 flankbed promoter 101962 102419 . + . ID=CGI_10004961; scaffold232 WUBlastX DNA_Maverick 101805 102419 121 - . . scaffold232 flankbed promoter 101962 102350 . + . ID=CGI_10004961; scaffold232 WUBlastX DNA_Maverick 101694 102350 104 - . . scaffold236 flankbed promoter 13915 14058 . + . ID=CGI_10018131; scaffold236 TRF Tandem_Repeat 13812 14058 186 + . . scaffold236 flankbed promoter 13915 14058 . + . ID=CGI_10018131; scaffold236 TRF Tandem_Repeat 13847 14058 85 + . . scaffold236 flankbed promoter 37740 37838 . - . ID=CGI_10018134; scaffold236 WUBlastX LINE_L2 37740 38174 51 + . . scaffold236 flankbed promoter 37599 37838 . - . ID=CGI_10018134; scaffold236 WUBlastX LTR_ERV1 37599 37994 41 + . . scaffold236 flankbed promoter 37716 37838 . - . ID=CGI_10018134; scaffold236 WUBlastX LINE_L2 37716 38102 62 + . . scaffold236 flankbed promoter 361292 361510 . + . ID=CGI_10018153; scaffold236 WUBlastX LINE_CR1-L2 361127 361510 62 + . . scaffold236 flankbed promoter 361292 361402 . + . ID=CGI_10018153; scaffold236 WUBlastX LINE_CR1 361100 361402 177 + . . scaffold236 flankbed promoter 434272 434653 . + . ID=CGI_10018158; scaffold236 TRF Tandem_Repeat 434272 434653 518 + . . scaffold236 flankbed promoter 434272 434616 . + . ID=CGI_10018158; scaffold236 TRF Tandem_Repeat 434272 434616 588 + . . scaffold237 flankbed promoter 68908 69807 . + . ID=CGI_10021565; scaffold237 WUBlastX DNA_IS4EU 68908 69807 104 + . . scaffold237 flankbed promoter 69223 69816 . + . ID=CGI_10021565; scaffold237 WUBlastX DNA_IS4EU 69223 69816 175 + . . scaffold237 flankbed promoter 200755 201321 . + . ID=CGI_10021571; scaffold237 WUBlastX LTR_Gypsy-Cigr 200755 201321 135 + . . scaffold237 flankbed promoter 200647 201174 . + . ID=CGI_10021571; scaffold237 WUBlastX LTR_Gypsy 200647 201174 88 + . . scaffold237 flankbed promoter 200863 201483 . + . ID=CGI_10021571; scaffold237 WUBlastX LTR_Gypsy-Cigr 200863 201483 105 + . . scaffold237 flankbed promoter 249930 249979 . - . ID=CGI_10021575; scaffold237 TRF Tandem_Repeat 249930 249979 55 + . . scaffold237 flankbed promoter 303002 303126 . + . ID=CGI_10021580; scaffold237 TRF Tandem_Repeat 303002 303126 126 + . . scaffold237 flankbed promoter 303179 303274 . + . ID=CGI_10021580; scaffold237 TRF Tandem_Repeat 303179 303274 97 + . . scaffold237 flankbed promoter 303752 303778 . + . ID=CGI_10021580; scaffold237 TRF Tandem_Repeat 303752 303778 54 + . . scaffold237 flankbed promoter 437733 437784 . - . ID=CGI_10021585; scaffold237 TRF Tandem_Repeat 437733 437784 104 + . . scaffold237 flankbed promoter 589107 589658 . + . ID=CGI_10021587; scaffold237 WUBlastX LINE_L2 589047 589658 122 + . . scaffold237 flankbed promoter 589107 589538 . + . ID=CGI_10021587; scaffold237 WUBlastX LINE_L1 588777 589538 26 + . . scaffold237 flankbed promoter 589655 589723 . + . ID=CGI_10021587; scaffold237 WUBlastX LINE_L1 589655 589723 32 + . . scaffold237 flankbed promoter 589719 589853 . + . ID=CGI_10021587; scaffold237 WUBlastX LINE_R2 589719 589853 20 + . . scaffold237 flankbed promoter 638823 638923 . + . ID=CGI_10021589; scaffold237 TRF Tandem_Repeat 638823 638923 141 + . . scaffold240 flankbed promoter 28874 28899 . + . ID=CGI_10007841; scaffold240 TRF Tandem_Repeat 28874 28899 52 + . . scaffold240 flankbed promoter 28326 28721 . + . ID=CGI_10007841; scaffold240 WUBlastX LINE_RTE-X 28326 28721 78 + . . scaffold240 flankbed promoter 28347 28637 . + . ID=CGI_10007841; scaffold240 WUBlastX LINE_RTE-X 28347 28637 85 + . . scaffold240 flankbed promoter 69574 69699 . - . ID=CGI_10007845; scaffold240 WUBlastX LTR_Pao 69574 74688 3981 - . . scaffold240 flankbed promoter 152884 153203 . + . ID=CGI_10007848; scaffold240 TRF Tandem_Repeat 152884 153203 500 + . . scaffold241 flankbed promoter 13354 13401 . + . ID=CGI_10025082; scaffold241 TRF Tandem_Repeat 13354 13401 78 + . . scaffold241 flankbed promoter 288460 288507 . - . ID=CGI_10025101; scaffold241 WUBlastX DNA_TcMar-Fot1 288181 288507 76 - . . scaffold241 flankbed promoter 288460 288576 . - . ID=CGI_10025101; scaffold241 WUBlastX DNA_TcMar-Fot1 288205 288576 52 - . . scaffold241 flankbed promoter 445451 445496 . - . ID=CGI_10025106; scaffold241 TRF Tandem_Repeat 445451 445496 92 + . . scaffold241 flankbed promoter 773858 773929 . + . ID=CGI_10025123; scaffold241 WUBlastX DNA_TcMar-Tc1 773648 773929 139 + . . scaffold241 flankbed promoter 773923 774363 . + . ID=CGI_10025123; scaffold241 WUBlastX DNA_TcMar-Tc1 773923 774363 255 + . . scaffold241 flankbed promoter 800795 800834 . - . ID=CGI_10025124; scaffold241 TRF Tandem_Repeat 800795 800834 71 + . . scaffold241 flankbed promoter 819527 819593 . - . ID=CGI_10025126; scaffold241 TRF Tandem_Repeat 819527 819593 134 + . . scaffold241 flankbed promoter 935715 935858 . + . ID=CGI_10025131; scaffold241 WUBlastX LINE_L1-Tx1 935715 935858 33 - . . scaffold241 flankbed promoter 935181 935535 . + . ID=CGI_10025131; scaffold241 WUBlastX LINE_L1-Tx1 934327 935535 302 - . . scaffold241 flankbed promoter 935532 935825 . + . ID=CGI_10025131; scaffold241 WUBlastX LINE_L1 935532 935825 35 - . . scaffold242 flankbed promoter 75419 75666 . + . ID=CGI_10007083; scaffold242 TRF Tandem_Repeat 75419 75666 397 + . . scaffold242 flankbed promoter 75754 75831 . + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 75754 76443 35 + . . scaffold242 flankbed promoter 89851 90084 . - . ID=CGI_10007084; scaffold242 WUBlastX LTR_Gypsy 89851 90084 48 - . . scaffold243 flankbed promoter 13767 13903 . + . ID=CGI_10006810; scaffold243 WUBlastX RC_Helitron 13481 13903 384 - . . scaffold243 flankbed promoter 46824 46901 . - . ID=CGI_10006814; scaffold243 WUBlastX DNA_Kolobok 46617 46901 151 - . . scaffold243 flankbed promoter 49333 49449 . - . ID=CGI_10006815; scaffold243 TRF Tandem_Repeat 49333 49449 120 + . . scaffold247 flankbed promoter 552756 552801 . + . ID=CGI_10018603; scaffold247 TRF Tandem_Repeat 552756 552801 92 + . . scaffold248 flankbed promoter 252688 252927 . - . ID=CGI_10017229; scaffold248 WUBlastX LINE_Penelope 252688 252927 22 + . . scaffold248 flankbed promoter 252524 252682 . - . ID=CGI_10017229; scaffold248 WUBlastX LINE_Penelope 252524 252682 62 + . . scaffold248 flankbed promoter 253027 253037 . - . ID=CGI_10017229; scaffold248 WUBlastX LINE_Penelope 253027 253101 21 + . . scaffold248 flankbed promoter 283624 284122 . + . ID=CGI_10017231; scaffold248 TRF Tandem_Repeat 283624 284122 840 + . . scaffold248 flankbed promoter 311392 311485 . - . ID=CGI_10017234; scaffold248 TRF Tandem_Repeat 311392 311485 125 + . . scaffold248 flankbed promoter 311257 311345 . - . ID=CGI_10017234; scaffold248 TRF Tandem_Repeat 311257 311345 137 + . . scaffold248 flankbed promoter 482285 482520 . + . ID=CGI_10017238; scaffold248 TRF Tandem_Repeat 482096 482520 392 + . . scaffold248 flankbed promoter 482285 482520 . + . ID=CGI_10017238; scaffold248 TRF Tandem_Repeat 482096 482520 375 + . . scaffold252 flankbed promoter 92942 92965 . - . ID=CGI_10010763; scaffold252 WUBlastX DNA_MuDR 92735 92965 33 - . . scaffold252 flankbed promoter 93123 93467 . - . ID=CGI_10010763; scaffold252 WUBlastX DNA_MuDR 93123 93467 101 - . . scaffold252 flankbed promoter 93225 93524 . - . ID=CGI_10010763; scaffold252 WUBlastX DNA_MuDR 93225 93524 56 - . . scaffold252 flankbed promoter 184862 185197 . + . ID=CGI_10010767; scaffold252 WUBlastX LINE_RTE-X 184862 185197 74 + . . scaffold252 flankbed promoter 184859 185146 . + . ID=CGI_10010767; scaffold252 WUBlastX LINE_RTE-X 184859 185146 76 + . . scaffold252 flankbed promoter 184901 185275 . + . ID=CGI_10010767; scaffold252 WUBlastX LINE_RTE-X 184901 185275 63 + . . scaffold252 flankbed promoter 213286 213498 . - . ID=CGI_10010768; scaffold252 WUBlastX LTR_Ngaro 213286 213498 77 - . . scaffold252 flankbed promoter 213286 213637 . - . ID=CGI_10010768; scaffold252 WUBlastX LTR_Ngaro 213286 213651 64 - . . scaffold252 flankbed promoter 228692 228826 . - . ID=CGI_10010770; scaffold252 WUBlastX DNA_IS4EU 228692 228826 29 - . . scaffold252 flankbed promoter 228336 228482 . - . ID=CGI_10010770; scaffold252 WUBlastX DNA_Kolobok-IS4 228072 228482 126 - . . scaffold253 flankbed promoter 1552 1794 . + . ID=CGI_10003487; scaffold253 WUBlastX LTR_Gypsy 1552 1794 101 - . . scaffold253 flankbed promoter 1459 1764 . + . ID=CGI_10003487; scaffold253 WUBlastX LTR_Gypsy 1459 1764 35 - . . scaffold253 flankbed promoter 1516 1746 . + . ID=CGI_10003487; scaffold253 WUBlastX LTR_Gypsy 1516 1746 39 - . . scaffold253 flankbed promoter 1805 2014 . + . ID=CGI_10003487; scaffold253 WUBlastX LTR_Gypsy 1805 2014 27 - . . scaffold257 flankbed promoter 72158 72202 . + . ID=CGI_10027878; scaffold257 TRF Tandem_Repeat 72158 72202 90 + . . scaffold257 flankbed promoter 83934 83978 . + . ID=CGI_10027879; scaffold257 TRF Tandem_Repeat 83892 83978 61 + . . scaffold257 flankbed promoter 84056 84215 . + . ID=CGI_10027879; scaffold257 TRF Tandem_Repeat 84056 84215 196 + . . scaffold257 flankbed promoter 84242 84410 . + . ID=CGI_10027879; scaffold257 TRF Tandem_Repeat 84242 84410 173 + . . scaffold257 flankbed promoter 110196 110253 . - . ID=CGI_10027880; scaffold257 TRF Tandem_Repeat 110196 110253 116 + . . scaffold257 flankbed promoter 141618 141668 . + . ID=CGI_10027885; scaffold257 TRF Tandem_Repeat 141618 141668 102 + . . scaffold257 flankbed promoter 141666 141693 . + . ID=CGI_10027885; scaffold257 TRF Tandem_Repeat 141666 141693 56 + . . scaffold257 flankbed promoter 188564 188577 . + . ID=CGI_10027893; scaffold257 TRF Tandem_Repeat 188517 188577 122 + . . scaffold257 flankbed promoter 295803 295863 . + . ID=CGI_10027905; scaffold257 TRF Tandem_Repeat 295803 295863 95 + . . scaffold257 flankbed promoter 720361 720542 . + . ID=CGI_10027927; scaffold257 WUBlastX LINE_RTE-X 720132 720542 54 - . . scaffold257 flankbed promoter 720361 720518 . + . ID=CGI_10027927; scaffold257 WUBlastX LINE_RTE-X 720246 720518 115 - . . scaffold257 flankbed promoter 720361 720527 . + . ID=CGI_10027927; scaffold257 WUBlastX LINE_RTE-X 720198 720527 90 - . . scaffold257 flankbed promoter 1372674 1372718 . - . ID=CGI_10027950; scaffold257 TRF Tandem_Repeat 1372674 1372718 90 + . . scaffold258 flankbed promoter 148943 149068 . - . ID=CGI_10020044; scaffold258 WUBlastX LTR_Gypsy 148943 149068 20 - . . scaffold258 flankbed promoter 160049 160091 . - . ID=CGI_10020045; scaffold258 TRF Tandem_Repeat 160049 160091 72 + . . scaffold258 flankbed promoter 252880 252923 . + . ID=CGI_10020052; scaffold258 TRF Tandem_Repeat 252880 252923 79 + . . scaffold258 flankbed promoter 257980 258112 . - . ID=CGI_10020053; scaffold258 TRF Tandem_Repeat 257980 258112 160 + . . scaffold258 flankbed promoter 258169 258282 . - . ID=CGI_10020053; scaffold258 TRF Tandem_Repeat 258169 258282 138 + . . scaffold258 flankbed promoter 270508 270554 . - . ID=CGI_10020054; scaffold258 TRF Tandem_Repeat 270508 270554 94 + . . scaffold258 flankbed promoter 307405 307442 . + . ID=CGI_10020056; scaffold258 TRF Tandem_Repeat 307332 307442 78 + . . scaffold258 flankbed promoter 449176 449213 . + . ID=CGI_10020067; scaffold258 TRF Tandem_Repeat 449176 449213 76 + . . scaffold26 flankbed promoter 10008 10046 . + . ID=CGI_10002294; scaffold26 TRF Tandem_Repeat 10008 10046 78 + . . scaffold26 flankbed promoter 24026 24111 . - . ID=CGI_10002296; scaffold26 TRF Tandem_Repeat 24026 24111 102 + . . scaffold26 flankbed promoter 24080 24129 . - . ID=CGI_10002296; scaffold26 TRF Tandem_Repeat 24080 24129 50 + . . scaffold26 flankbed promoter 23970 24117 . - . ID=CGI_10002296; scaffold26 TRF Tandem_Repeat 23970 24117 84 + . . scaffold26 flankbed promoter 24203 24296 . - . ID=CGI_10002296; scaffold26 TRF Tandem_Repeat 24203 24296 69 + . . scaffold26 flankbed promoter 24211 24277 . - . ID=CGI_10002296; scaffold26 TRF Tandem_Repeat 24211 24277 107 + . . scaffold26 flankbed promoter 24853 24881 . + . ID=CGI_10002297; scaffold26 TRF Tandem_Repeat 24853 24881 58 + . . scaffold267 flankbed promoter 105493 106093 . - . ID=CGI_10018287; scaffold267 WUBlastX DNA_Maverick 105493 106569 589 - . . scaffold267 flankbed promoter 146916 146949 . - . ID=CGI_10018295; scaffold267 TRF Tandem_Repeat 146916 146949 52 + . . scaffold267 flankbed promoter 150214 150435 . + . ID=CGI_10018296; scaffold267 WUBlastX LTR_Gypsy-Cigr 150214 150435 96 + . . scaffold267 flankbed promoter 150423 150716 . + . ID=CGI_10018296; scaffold267 WUBlastX LTR_Gypsy 150423 150716 99 + . . scaffold267 flankbed promoter 239152 239194 . + . ID=CGI_10018299; scaffold267 TRF Tandem_Repeat 239152 239194 86 + . . scaffold267 flankbed promoter 323334 323380 . + . ID=CGI_10018306; scaffold267 TRF Tandem_Repeat 323334 323380 94 + . . scaffold267 flankbed promoter 444499 444555 . + . ID=CGI_10018312; scaffold267 TRF Tandem_Repeat 444499 444555 98 + . . scaffold267 flankbed promoter 444491 444554 . + . ID=CGI_10018312; scaffold267 TRF Tandem_Repeat 444491 444554 66 + . . scaffold267 flankbed promoter 492428 492433 . + . ID=CGI_10018313; scaffold267 WUBlastX DNA_Kolobok 492428 492604 75 + . . scaffold267 flankbed promoter 492389 492433 . + . ID=CGI_10018313; scaffold267 WUBlastX DNA_Kolobok 492389 492589 59 + . . scaffold269 flankbed promoter 84062 84099 . - . ID=CGI_10018987; scaffold269 TRF Tandem_Repeat 84062 84099 67 + . . scaffold269 flankbed promoter 160742 160746 . - . ID=CGI_10018993; scaffold269 TRF Tandem_Repeat 160742 160780 78 + . . scaffold270 flankbed promoter 56448 56630 . - . ID=CGI_10005009; scaffold270 WUBlastX DNA_Harbinger 56448 56630 22 + . . scaffold270 flankbed promoter 56781 56914 . - . ID=CGI_10005009; scaffold270 WUBlastX DNA_Harbinger 56781 57050 68 + . . scaffold271 flankbed promoter 413159 413199 . + . ID=CGI_10024475; scaffold271 TRF Tandem_Repeat 413159 413199 82 + . . scaffold271 flankbed promoter 491859 491894 . + . ID=CGI_10024483; scaffold271 TRF Tandem_Repeat 491859 491894 56 + . . scaffold271 flankbed promoter 832226 832254 . + . ID=CGI_10024501; scaffold271 WUBlastX LINE_RTE-X 832126 832254 25 - . . scaffold271 flankbed promoter 859436 859516 . - . ID=CGI_10024502; scaffold271 TRF Tandem_Repeat 859436 859516 126 + . . scaffold271 flankbed promoter 936721 936782 . - . ID=CGI_10024504; scaffold271 TRF Tandem_Repeat 936721 936782 124 + . . scaffold271 flankbed promoter 937485 937641 . - . ID=CGI_10024504; scaffold271 WUBlastX LINE_RTE-X 937485 937694 87 - . . scaffold271 flankbed promoter 937503 937641 . - . ID=CGI_10024504; scaffold271 WUBlastX LINE_RTE-X 937503 937757 26 - . . scaffold274 flankbed promoter 138931 139403 . + . ID=CGI_10017015; scaffold274 TRF Tandem_Repeat 138528 139403 1318 + . . scaffold274 flankbed promoter 176821 176878 . - . ID=CGI_10017018; scaffold274 TRF Tandem_Repeat 176821 176878 116 + . . scaffold274 flankbed promoter 256560 256602 . - . ID=CGI_10017028; scaffold274 TRF Tandem_Repeat 256560 256602 86 + . . scaffold274 flankbed promoter 332783 332838 . - . ID=CGI_10017033; scaffold274 TRF Tandem_Repeat 332783 332838 71 + . . scaffold274 flankbed promoter 462299 462347 . - . ID=CGI_10017036; scaffold274 TRF Tandem_Repeat 462299 462347 89 + . . scaffold276 flankbed promoter 46442 46711 . - . ID=CGI_10006436; scaffold276 WUBlastX LINE_RTE-X 46442 46777 56 + . . scaffold276 flankbed promoter 46660 46711 . - . ID=CGI_10006436; scaffold276 WUBlastX LINE_RTE-X 46660 47271 97 + . . scaffold27654 flankbed promoter 2371 2682 . - . ID=CGI_10000367; scaffold27654 WUBlastX DNA_IS4EU 2371 2682 54 + . . scaffold27654 flankbed promoter 1371 1442 . + . ID=CGI_10000368; scaffold27654 WUBlastX DNA_Crypton 1047 1442 29 - . . scaffold278 flankbed promoter 128529 128835 . - . ID=CGI_10005573; scaffold278 TRF Tandem_Repeat 128529 128835 446 + . . scaffold279 flankbed promoter 301638 301695 . + . ID=CGI_10012634; scaffold279 TRF Tandem_Repeat 301638 301695 116 + . . scaffold280 flankbed promoter 99579 99607 . + . ID=CGI_10024569; scaffold280 TRF Tandem_Repeat 99579 99607 51 + . . scaffold280 flankbed promoter 157779 157822 . - . ID=CGI_10024572; scaffold280 TRF Tandem_Repeat 157779 157822 88 + . . scaffold280 flankbed promoter 157779 157822 . + . ID=CGI_10024573; scaffold280 TRF Tandem_Repeat 157779 157822 88 + . . scaffold280 flankbed promoter 236009 236067 . + . ID=CGI_10024579; scaffold280 TRF Tandem_Repeat 236009 236067 118 + . . scaffold280 flankbed promoter 320679 320717 . - . ID=CGI_10024587; scaffold280 TRF Tandem_Repeat 320679 320717 78 + . . scaffold280 flankbed promoter 539656 539685 . - . ID=CGI_10024592; scaffold280 WUBlastX LTR_Copia 539656 539685 20 + . . scaffold280 flankbed promoter 615135 615606 . - . ID=CGI_10024599; scaffold280 TRF Tandem_Repeat 615017 615606 824 + . . scaffold280 flankbed promoter 615017 615099 . + . ID=CGI_10024600; scaffold280 TRF Tandem_Repeat 615017 615606 824 + . . scaffold280 flankbed promoter 723847 723946 . - . ID=CGI_10024604; scaffold280 TRF Tandem_Repeat 723847 723946 107 + . . scaffold285 flankbed promoter 112015 112074 . - . ID=CGI_10011158; scaffold285 TRF Tandem_Repeat 112015 112074 120 + . . scaffold285 flankbed promoter 142100 142169 . + . ID=CGI_10011161; scaffold285 TRF Tandem_Repeat 142100 142169 61 + . . scaffold285 flankbed promoter 231734 232024 . - . ID=CGI_10011166; scaffold285 WUBlastX LTR_DIRS 231734 232024 56 + . . scaffold285 flankbed promoter 231521 232015 . - . ID=CGI_10011166; scaffold285 WUBlastX LTR_DIRS 231521 232015 49 + . . scaffold285 flankbed promoter 255122 255208 . - . ID=CGI_10011168; scaffold285 TRF Tandem_Repeat 255122 255208 86 + . . scaffold285 flankbed promoter 255286 255312 . - . ID=CGI_10011168; scaffold285 TRF Tandem_Repeat 255286 255467 136 + . . scaffold286 flankbed promoter 145875 146368 . + . ID=CGI_10015960; scaffold286 WUBlastX LTR_Gypsy-Cigr 143987 146368 1296 + . . scaffold286 flankbed promoter 206296 206550 . + . ID=CGI_10015965; scaffold286 WUBlastX DNA_P 206296 206550 93 + . . scaffold286 flankbed promoter 206290 206607 . + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 206290 206607 29 + . . scaffold286 flankbed promoter 291448 291718 . - . ID=CGI_10015967; scaffold286 WUBlastX LTR_Gypsy 291448 291801 232 - . . scaffold286 flankbed promoter 291097 291141 . - . ID=CGI_10015967; scaffold286 WUBlastX LTR_Gypsy-Cigr 291097 291141 29 - . . scaffold286 flankbed promoter 291263 291325 . - . ID=CGI_10015967; scaffold286 WUBlastX LTR_Gypsy 291263 291325 36 - . . scaffold286 flankbed promoter 290965 290994 . - . ID=CGI_10015967; scaffold286 WUBlastX LTR_Gypsy 290965 290994 20 - . . scaffold286 flankbed promoter 291116 291325 . - . ID=CGI_10015967; scaffold286 WUBlastX LTR_Gypsy 291116 291325 24 - . . scaffold286 flankbed promoter 291257 291349 . - . ID=CGI_10015967; scaffold286 WUBlastX LTR_Gypsy 291257 291349 29 - . . scaffold288 flankbed promoter 144055 144291 . + . ID=CGI_10020659; scaffold288 WUBlastX LTR_DIRS? 144055 144291 64 - . . scaffold288 flankbed promoter 143853 143924 . + . ID=CGI_10020659; scaffold288 WUBlastX LTR_DIRS 143853 143924 21 - . . scaffold288 flankbed promoter 143927 144064 . + . ID=CGI_10020659; scaffold288 WUBlastX LTR_DIRS 143927 144064 57 - . . scaffold288 flankbed promoter 215887 215924 . - . ID=CGI_10020660; scaffold288 TRF Tandem_Repeat 214577 215924 1306 + . . scaffold288 flankbed promoter 215887 215907 . - . ID=CGI_10020660; scaffold288 TRF Tandem_Repeat 215242 215907 407 + . . scaffold290 flankbed promoter 160137 160231 . + . ID=CGI_10018537; scaffold290 TRF Tandem_Repeat 160137 160231 136 + . . scaffold290 flankbed promoter 178019 178216 . - . ID=CGI_10018538; scaffold290 TRF Tandem_Repeat 178019 179140 1319 + . . scaffold290 flankbed promoter 209043 209279 . - . ID=CGI_10018539; scaffold290 WUBlastX LTR_Gypsy 209043 209279 89 + . . scaffold290 flankbed promoter 209327 209505 . - . ID=CGI_10018539; scaffold290 WUBlastX LTR_Gypsy 209327 209677 197 + . . scaffold290 flankbed promoter 209279 209470 . - . ID=CGI_10018539; scaffold290 WUBlastX LTR_Gypsy 209279 209470 35 + . . scaffold290 flankbed promoter 264277 264321 . - . ID=CGI_10018540; scaffold290 TRF Tandem_Repeat 264277 264321 90 + . . scaffold290 flankbed promoter 310082 310255 . - . ID=CGI_10018542; scaffold290 WUBlastX LINE_L1 310082 310255 81 + . . scaffold290 flankbed promoter 310028 310240 . - . ID=CGI_10018542; scaffold290 WUBlastX LINE_L2 310028 310240 62 + . . scaffold290 flankbed promoter 309938 310240 . - . ID=CGI_10018542; scaffold290 WUBlastX LINE_L2 309938 310240 39 + . . scaffold290 flankbed promoter 334022 334111 . - . ID=CGI_10018544; scaffold290 WUBlastX LINE_L2 334022 334111 21 + . . scaffold290 flankbed promoter 334054 334119 . - . ID=CGI_10018544; scaffold290 WUBlastX LINE_L1 334054 334119 23 + . . scaffold290 flankbed promoter 334071 334124 . - . ID=CGI_10018544; scaffold290 WUBlastX LINE_L1-Tx1 334071 334124 27 + . . scaffold290 flankbed promoter 364127 364274 . + . ID=CGI_10018545; scaffold290 TRF Tandem_Repeat 364127 364274 217 + . . scaffold290 flankbed promoter 534101 534220 . + . ID=CGI_10018554; scaffold290 WUBlastX DNA_hAT 534101 534448 75 + . . scaffold29126 flankbed promoter 4650 5649 . - . ID=CGI_10000483; scaffold29126 WUBlastX LINE_L2 4621 5991 702 - . . scaffold292 flankbed promoter 4666 5286 . + . ID=CGI_10003526; scaffold292 WUBlastX LINE_Jockey 4666 5391 28 + . . scaffold292 flankbed promoter 4627 5154 . + . ID=CGI_10003526; scaffold292 WUBlastX LINE_CR1 4627 5154 236 + . . scaffold29334 flankbed promoter 5591 5697 . + . ID=CGI_10000511; scaffold29334 TRF Tandem_Repeat 5591 5697 88 + . . scaffold29334 flankbed promoter 5629 5655 . + . ID=CGI_10000511; scaffold29334 TRF Tandem_Repeat 5629 5655 54 + . . scaffold296 flankbed promoter 116658 116729 . + . ID=CGI_10011695; scaffold296 WUBlastX LTR_Ngaro 116658 116729 29 + . . scaffold296 flankbed promoter 116787 117230 . + . ID=CGI_10011695; scaffold296 WUBlastX LTR_Ngaro 116787 117230 105 + . . scaffold296 flankbed promoter 207050 207092 . + . ID=CGI_10011700; scaffold296 TRF Tandem_Repeat 207050 207092 86 + . . scaffold298 flankbed promoter 11730 11975 . - . ID=CGI_10018815; scaffold298 TRF Tandem_Repeat 11730 12040 155 + . . scaffold298 flankbed promoter 11763 11975 . - . ID=CGI_10018815; scaffold298 TRF Tandem_Repeat 11763 12034 323 + . . scaffold298 flankbed promoter 11730 11975 . - . ID=CGI_10018815; scaffold298 TRF Tandem_Repeat 11730 12040 482 + . . scaffold298 flankbed promoter 11730 11975 . - . ID=CGI_10018815; scaffold298 TRF Tandem_Repeat 11730 12088 343 + . . scaffold298 flankbed promoter 11120 11716 . - . ID=CGI_10018815; scaffold298 WUBlastX DNA_Maverick 11120 11716 395 - . . scaffold298 flankbed promoter 11015 11719 . - . ID=CGI_10018815; scaffold298 WUBlastX DNA_Maverick 11015 11719 276 - . . scaffold298 flankbed promoter 88062 88087 . - . ID=CGI_10018820; scaffold298 TRF Tandem_Repeat 88062 88087 52 + . . scaffold298 flankbed promoter 285035 285249 . - . ID=CGI_10018823; scaffold298 WUBlastX LTR_Gypsy 285035 285268 98 - . . scaffold298 flankbed promoter 285056 285249 . - . ID=CGI_10018823; scaffold298 WUBlastX LTR_Gypsy 285056 285328 47 - . . scaffold298 flankbed promoter 312423 313022 . - . ID=CGI_10018824; scaffold298 WUBlastX LTR_Gypsy-Cigr 312423 313022 91 + . . scaffold298 flankbed promoter 313381 313412 . - . ID=CGI_10018824; scaffold298 WUBlastX LTR_Gypsy 313381 313461 20 + . . scaffold298 flankbed promoter 312471 312911 . - . ID=CGI_10018824; scaffold298 WUBlastX LTR_Gypsy 312471 312911 115 + . . scaffold298 flankbed promoter 313375 313412 . - . ID=CGI_10018824; scaffold298 WUBlastX LTR_Gypsy 313375 313431 20 + . . scaffold298 flankbed promoter 341492 341550 . + . ID=CGI_10018825; scaffold298 TRF Tandem_Repeat 341492 341550 118 + . . scaffold29846 flankbed promoter 3765 3863 . + . ID=CGI_10000572; scaffold29846 WUBlastX LINE_RTE-X 3765 3863 36 + . . scaffold3 flankbed promoter 136820 136903 . - . ID=CGI_10027279; scaffold3 WUBlastX LINE_L1 136820 136903 20 + . . scaffold3 flankbed promoter 136600 136680 . - . ID=CGI_10027279; scaffold3 WUBlastX LINE_CR1-L2 136600 136680 24 + . . scaffold3 flankbed promoter 207516 207545 . - . ID=CGI_10027281; scaffold3 TRF Tandem_Repeat 207516 207545 60 + . . scaffold3 flankbed promoter 520909 521349 . + . ID=CGI_10027294; scaffold3 WUBlastX LTR_Gypsy 520909 521430 67 + . . scaffold3 flankbed promoter 520350 520415 . + . ID=CGI_10027294; scaffold3 WUBlastX LTR_Gypsy 519660 520415 70 + . . scaffold3 flankbed promoter 694972 694999 . + . ID=CGI_10027298; scaffold3 TRF Tandem_Repeat 694948 694999 104 + . . scaffold3 flankbed promoter 745655 745700 . - . ID=CGI_10027299; scaffold3 TRF Tandem_Repeat 745655 745700 92 + . . scaffold3 flankbed promoter 803577 803593 . - . ID=CGI_10027303; scaffold3 WUBlastX LTR_Pao 803577 804656 1045 - . . scaffold3 flankbed promoter 804376 804656 . + . ID=CGI_10027304; scaffold3 WUBlastX LTR_Pao 803577 804656 1045 - . . scaffold3 flankbed promoter 893568 893877 . - . ID=CGI_10027310; scaffold3 WUBlastX LINE_RTE-X 893568 894200 155 + . . scaffold3 flankbed promoter 893484 893877 . - . ID=CGI_10027310; scaffold3 WUBlastX LINE_CR1-L2 893484 894026 33 + . . scaffold3 flankbed promoter 945920 946063 . + . ID=CGI_10027316; scaffold3 WUBlastX LINE_RTE-X 945920 946063 54 + . . scaffold3 flankbed promoter 945459 946033 . + . ID=CGI_10027316; scaffold3 WUBlastX LINE_RTE-X 944798 946033 163 + . . scaffold3 flankbed promoter 1089783 1089856 . - . ID=CGI_10027322; scaffold3 TRF Tandem_Repeat 1089783 1089915 221 + . . scaffold3 flankbed promoter 1091136 1091162 . + . ID=CGI_10027323; scaffold3 TRF Tandem_Repeat 1091136 1091162 54 + . . scaffold3 flankbed promoter 1101666 1101727 . - . ID=CGI_10027324; scaffold3 TRF Tandem_Repeat 1101666 1101727 124 + . . scaffold3 flankbed promoter 1117120 1117176 . - . ID=CGI_10027325; scaffold3 TRF Tandem_Repeat 1117120 1117176 114 + . . scaffold3 flankbed promoter 1176542 1176604 . + . ID=CGI_10027328; scaffold3 TRF Tandem_Repeat 1176542 1176604 117 + . . scaffold3 flankbed promoter 1237040 1237548 . + . ID=CGI_10027329; scaffold3 TRF Tandem_Repeat 1236556 1237548 1239 + . . scaffold301 flankbed promoter 68563 68589 . - . ID=CGI_10026708; scaffold301 TRF Tandem_Repeat 68563 68589 54 + . . scaffold301 flankbed promoter 558663 558992 . - . ID=CGI_10026724; scaffold301 WUBlastX LINE_RTE-X 557787 558992 536 - . . scaffold301 flankbed promoter 558974 559662 . - . ID=CGI_10026724; scaffold301 WUBlastX LINE_RTE-X 558974 560158 552 - . . scaffold301 flankbed promoter 559013 559662 . - . ID=CGI_10026724; scaffold301 WUBlastX LINE_RTE-X 559013 560536 483 - . . scaffold301 flankbed promoter 775443 775495 . - . ID=CGI_10026730; scaffold301 TRF Tandem_Repeat 775443 775495 99 + . . scaffold301 flankbed promoter 870825 871737 . - . ID=CGI_10026734; scaffold301 WUBlastX LTR_Gypsy 870825 872909 1818 - . . scaffold301 flankbed promoter 870801 870932 . - . ID=CGI_10026734; scaffold301 WUBlastX LTR_Gypsy 870801 870932 24 - . . scaffold301 flankbed promoter 1064670 1064786 . - . ID=CGI_10026741; scaffold301 TRF Tandem_Repeat 1064670 1064786 188 + . . scaffold301 flankbed promoter 1064713 1064774 . - . ID=CGI_10026741; scaffold301 TRF Tandem_Repeat 1064713 1064774 50 + . . scaffold301 flankbed promoter 1092542 1092620 . - . ID=CGI_10026743; scaffold301 TRF Tandem_Repeat 1092542 1092620 122 + . . scaffold301 flankbed promoter 1141771 1141945 . - . ID=CGI_10026746; scaffold301 WUBlastX LTR_Gypsy 1141771 1142112 47 - . . scaffold301 flankbed promoter 1141825 1141945 . - . ID=CGI_10026746; scaffold301 WUBlastX LTR_Gypsy-Cigr 1141825 1142112 86 - . . scaffold301 flankbed promoter 1180718 1180772 . - . ID=CGI_10026750; scaffold301 TRF Tandem_Repeat 1180718 1180772 110 + . . scaffold302 flankbed promoter 10935 11309 . - . ID=CGI_10002891; scaffold302 WUBlastX LTR_ERV1 10935 11309 28 - . . scaffold304 flankbed promoter 99048 99359 . + . ID=CGI_10016550; scaffold304 WUBlastX DNA_Kolobok-IS4 99048 99578 69 + . . scaffold304 flankbed promoter 183009 183142 . - . ID=CGI_10016555; scaffold304 TRF Tandem_Repeat 183009 183142 106 + . . scaffold305 flankbed promoter 48713 48794 . + . ID=CGI_10019114; scaffold305 TRF Tandem_Repeat 48713 48794 128 + . . scaffold305 flankbed promoter 93388 93401 . + . ID=CGI_10019116; scaffold305 WUBlastX LINE_RTE-X 93147 93401 26 + . . scaffold305 flankbed promoter 234692 235332 . + . ID=CGI_10019123; scaffold305 TRF Tandem_Repeat 234692 235332 985 + . . scaffold305 flankbed promoter 261485 261545 . - . ID=CGI_10019125; scaffold305 TRF Tandem_Repeat 261485 261545 79 + . . scaffold305 flankbed promoter 261484 261545 . - . ID=CGI_10019125; scaffold305 TRF Tandem_Repeat 261484 261545 63 + . . scaffold305 flankbed promoter 369716 369895 . - . ID=CGI_10019133; scaffold305 TRF Tandem_Repeat 369716 369895 152 + . . scaffold305 flankbed promoter 369845 370130 . - . ID=CGI_10019133; scaffold305 TRF Tandem_Repeat 369845 370130 192 + . . scaffold305 flankbed promoter 369894 370479 . - . ID=CGI_10019133; scaffold305 TRF Tandem_Repeat 369894 370479 911 + . . scaffold305 flankbed promoter 370176 370263 . - . ID=CGI_10019133; scaffold305 TRF Tandem_Repeat 370176 370263 54 + . . scaffold305 flankbed promoter 370190 370274 . - . ID=CGI_10019133; scaffold305 TRF Tandem_Repeat 370190 370274 69 + . . scaffold308 flankbed promoter 70350 70408 . - . ID=CGI_10011005; scaffold308 TRF Tandem_Repeat 70350 70408 118 + . . scaffold308 flankbed promoter 69493 69615 . - . ID=CGI_10011005; scaffold308 WUBlastX LINE_RTE-BovB 69493 69615 95 - . . scaffold308 flankbed promoter 69587 69763 . - . ID=CGI_10011005; scaffold308 WUBlastX LINE_RTE-BovB 69587 69763 93 - . . scaffold308 flankbed promoter 236844 236884 . + . ID=CGI_10011012; scaffold308 TRF Tandem_Repeat 236844 236884 82 + . . scaffold308 flankbed promoter 250366 250782 . - . ID=CGI_10011013; scaffold308 WUBlastX DNA_TcMar-Fot1 250366 250782 50 - . . scaffold308 flankbed promoter 250865 251083 . - . ID=CGI_10011013; scaffold308 WUBlastX DNA_TcMar-Fot1 250865 251083 53 - . . scaffold308 flankbed promoter 250366 250417 . + . ID=CGI_10011014; scaffold308 WUBlastX DNA_TcMar-Fot1 250366 250782 50 - . . scaffold31 flankbed promoter 16134 16166 . - . ID=CGI_10013551; scaffold31 WUBlastX LINE_L1 15375 16166 40 - . . scaffold31 flankbed promoter 24855 24915 . - . ID=CGI_10013552; scaffold31 TRF Tandem_Repeat 24855 24915 122 + . . scaffold31 flankbed promoter 166937 167053 . + . ID=CGI_10013560; scaffold31 WUBlastX LTR_Ngaro 166937 167053 65 + . . scaffold31 flankbed promoter 210960 211325 . - . ID=CGI_10013561; scaffold31 WUBlastX DNA_Maverick 210960 211325 220 - . . scaffold31 flankbed promoter 211239 211352 . - . ID=CGI_10013561; scaffold31 WUBlastX DNA_Maverick 211239 211352 22 - . . scaffold31090 flankbed promoter 6865 7044 . + . ID=CGI_10000703; scaffold31090 WUBlastX DNA_TcMar-Fot1 6865 7044 32 + . . scaffold31090 flankbed promoter 6862 6987 . + . ID=CGI_10000703; scaffold31090 WUBlastX DNA_TcMar-Fot1 6862 6987 40 + . . scaffold31090 flankbed promoter 7202 7327 . + . ID=CGI_10000703; scaffold31090 WUBlastX DNA_TcMar-Fot1 7202 7327 32 + . . scaffold31090 flankbed promoter 6590 6841 . + . ID=CGI_10000703; scaffold31090 WUBlastX DNA_TcMar-Fot1 6590 6841 94 + . . scaffold31090 flankbed promoter 6641 6880 . + . ID=CGI_10000703; scaffold31090 WUBlastX DNA_TcMar-Fot1 6641 6880 88 + . . scaffold31090 flankbed promoter 6826 6954 . + . ID=CGI_10000703; scaffold31090 WUBlastX DNA_TcMar-Fot1 6826 6954 70 + . . scaffold311 flankbed promoter 50237 50503 . + . ID=CGI_10004626; scaffold311 TRF Tandem_Repeat 50132 50503 358 + . . scaffold311 flankbed promoter 50792 50999 . + . ID=CGI_10004626; scaffold311 TRF Tandem_Repeat 50792 50999 398 + . . scaffold312 flankbed promoter 39915 40383 . - . ID=CGI_10002624; scaffold312 WUBlastX DNA_Maverick 39915 40394 302 - . . scaffold312 flankbed promoter 40361 40383 . - . ID=CGI_10002624; scaffold312 WUBlastX DNA_Maverick 40361 40423 29 - . . scaffold312 flankbed promoter 39832 39915 . - . ID=CGI_10002624; scaffold312 WUBlastX DNA_Maverick 39832 39915 27 - . . scaffold313 flankbed promoter 62791 62830 . - . ID=CGI_10026581; scaffold313 TRF Tandem_Repeat 62791 62830 80 + . . scaffold313 flankbed promoter 136077 136583 . - . ID=CGI_10026584; scaffold313 WUBlastX LINE_L1 136077 136583 24 + . . scaffold313 flankbed promoter 136173 136998 . - . ID=CGI_10026584; scaffold313 WUBlastX LINE_RTE-X 136173 137234 565 + . . scaffold313 flankbed promoter 298067 298113 . - . ID=CGI_10026595; scaffold313 TRF Tandem_Repeat 298067 298113 94 + . . scaffold313 flankbed promoter 423789 424451 . + . ID=CGI_10026604; scaffold313 TRF Tandem_Repeat 423639 424451 719 + . . scaffold313 flankbed promoter 423789 424451 . + . ID=CGI_10026604; scaffold313 TRF Tandem_Repeat 423649 424451 886 + . . scaffold313 flankbed promoter 676243 676581 . - . ID=CGI_10026617; scaffold313 WUBlastX LINE_RTE-X 676243 676581 72 + . . scaffold313 flankbed promoter 676652 676702 . - . ID=CGI_10026617; scaffold313 WUBlastX LINE_RTE-X 676652 676702 47 + . . scaffold313 flankbed promoter 676625 676732 . - . ID=CGI_10026617; scaffold313 WUBlastX LINE_RTE-X 676625 676732 23 + . . scaffold313 flankbed promoter 676652 676846 . - . ID=CGI_10026617; scaffold313 WUBlastX LINE_RTE-X 676652 676846 27 + . . scaffold313 flankbed promoter 676192 676593 . - . ID=CGI_10026617; scaffold313 WUBlastX LINE_RTE-X 676192 676593 46 + . . scaffold313 flankbed promoter 712695 712948 . - . ID=CGI_10026621; scaffold313 TRF Tandem_Repeat 712695 712948 499 + . . scaffold31484 flankbed promoter 8771 9246 . - . ID=CGI_10000754; scaffold31484 WUBlastX RC_Helitron 8771 9340 100 - . . scaffold315 flankbed promoter 29489 29853 . + . ID=CGI_10020398; scaffold315 TRF Tandem_Repeat 29084 29853 780 + . . scaffold315 flankbed promoter 30033 30362 . + . ID=CGI_10020398; scaffold315 WUBlastX DNA_IS4EU 30033 30362 42 + . . scaffold315 flankbed promoter 30336 30488 . + . ID=CGI_10020398; scaffold315 WUBlastX DNA_Kolobok-IS4 30336 31724 346 + . . scaffold315 flankbed promoter 49876 50590 . - . ID=CGI_10020400; scaffold315 WUBlastX LTR_Gypsy 49876 50805 659 + . . scaffold315 flankbed promoter 49612 50590 . - . ID=CGI_10020400; scaffold315 WUBlastX LTR_Gypsy 49612 50805 446 + . . scaffold315 flankbed promoter 141232 141356 . + . ID=CGI_10020406; scaffold315 TRF Tandem_Repeat 141232 141356 88 + . . scaffold315 flankbed promoter 204209 204892 . - . ID=CGI_10020411; scaffold315 WUBlastX LTR_Pao 204209 204892 47 - . . scaffold315 flankbed promoter 204542 204925 . - . ID=CGI_10020411; scaffold315 WUBlastX LTR_Pao 204542 204925 101 - . . scaffold315 flankbed promoter 204386 204916 . - . ID=CGI_10020411; scaffold315 WUBlastX LTR_Pao 204386 204916 64 - . . scaffold315 flankbed promoter 332974 333067 . - . ID=CGI_10020418; scaffold315 TRF Tandem_Repeat 332974 333067 109 + . . scaffold315 flankbed promoter 333905 333968 . + . ID=CGI_10020419; scaffold315 TRF Tandem_Repeat 333885 333968 96 + . . scaffold315 flankbed promoter 395853 395864 . - . ID=CGI_10020424; scaffold315 WUBlastX DNA_hAT 395076 395864 427 - . . scaffold315 flankbed promoter 426962 427033 . + . ID=CGI_10020426; scaffold315 WUBlastX DNA_Harbinger 426962 427657 567 + . . scaffold315 flankbed promoter 504187 504326 . - . ID=CGI_10020434; scaffold315 TRF Tandem_Repeat 504187 504326 154 + . . scaffold315 flankbed promoter 505095 505121 . - . ID=CGI_10020434; scaffold315 TRF Tandem_Repeat 505095 505387 289 + . . scaffold315 flankbed promoter 505097 505121 . - . ID=CGI_10020434; scaffold315 TRF Tandem_Repeat 505097 505399 282 + . . scaffold315 flankbed promoter 581837 581863 . + . ID=CGI_10020438; scaffold315 TRF Tandem_Repeat 581837 581863 54 + . . scaffold31538 flankbed promoter 4042 4695 . - . ID=CGI_10000764; scaffold31538 WUBlastX DNA_Maverick 4042 4695 31 - . . scaffold31538 flankbed promoter 4150 4774 . - . ID=CGI_10000764; scaffold31538 WUBlastX DNA_Maverick 4150 5217 556 - . . scaffold317 flankbed promoter 108014 108180 . - . ID=CGI_10019341; scaffold317 WUBlastX DNA_Kolobok-Hyd 108014 108571 60 - . . scaffold317 flankbed promoter 109025 109066 . - . ID=CGI_10019342; scaffold317 WUBlastX DNA_Kolobok-Hyd 109025 109066 30 - . . scaffold317 flankbed promoter 207806 207966 . - . ID=CGI_10019348; scaffold317 WUBlastX DNA_Maverick 207806 208162 110 - . . scaffold317 flankbed promoter 524273 524320 . - . ID=CGI_10019359; scaffold317 WUBlastX LTR_Gypsy 524273 524320 27 - . . scaffold31880 flankbed promoter 6452 6613 . - . ID=CGI_10000810; scaffold31880 WUBlastX LINE_RTE-X 6452 6613 84 - . . scaffold31880 flankbed promoter 6621 6714 . - . ID=CGI_10000810; scaffold31880 WUBlastX LINE_RTE-X 6621 6764 40 - . . scaffold31880 flankbed promoter 6368 6649 . - . ID=CGI_10000810; scaffold31880 WUBlastX LINE_RTE-X 6368 6649 84 - . . scaffold31880 flankbed promoter 6326 6592 . - . ID=CGI_10000810; scaffold31880 WUBlastX LINE_RTE-X 6326 6592 59 - . . scaffold31956 flankbed promoter 8298 8432 . + . ID=CGI_10000817; scaffold31956 WUBlastX LINE_L1 8298 9140 27 + . . scaffold32 flankbed promoter 140931 141045 . + . ID=CGI_10010068; scaffold32 TRF Tandem_Repeat 140931 141045 97 + . . scaffold321 flankbed promoter 171882 172001 . - . ID=CGI_10020800; scaffold321 WUBlastX LINE_L1 171429 172001 77 - . . scaffold321 flankbed promoter 171882 172142 . - . ID=CGI_10020800; scaffold321 WUBlastX LINE_L1 171525 172142 42 - . . scaffold321 flankbed promoter 337138 337176 . - . ID=CGI_10020806; scaffold321 TRF Tandem_Repeat 337138 337176 78 + . . scaffold323 flankbed promoter 86770 86871 . + . ID=CGI_10009776; scaffold323 TRF Tandem_Repeat 86770 86871 204 + . . scaffold323 flankbed promoter 91759 92451 . - . ID=CGI_10009777; scaffold323 WUBlastX LTR_Gypsy 91759 92451 96 - . . scaffold323 flankbed promoter 123403 123600 . - . ID=CGI_10009779; scaffold323 WUBlastX DNA_Kolobok-Hyd 123085 123600 58 - . . scaffold32300 flankbed promoter 10526 10576 . - . ID=CGI_10000880; scaffold32300 WUBlastX DNA_hAT-Ac 10298 10576 78 - . . scaffold324 flankbed promoter 190915 191006 . + . ID=CGI_10016193; scaffold324 TRF Tandem_Repeat 190915 191006 139 + . . scaffold324 flankbed promoter 297714 297880 . + . ID=CGI_10016201; scaffold324 TRF Tandem_Repeat 297235 297880 823 + . . scaffold32546 flankbed promoter 9383 9940 . - . ID=CGI_10000911; scaffold32546 WUBlastX LINE_L1 9383 9940 129 - . . scaffold32546 flankbed promoter 9428 10033 . - . ID=CGI_10000911; scaffold32546 WUBlastX LINE_L2 9428 10033 51 - . . scaffold326 flankbed promoter 66514 66601 . + . ID=CGI_10003297; scaffold326 WUBlastX LTR_Gypsy 66514 66615 35 + . . scaffold326 flankbed promoter 66541 66601 . + . ID=CGI_10003297; scaffold326 WUBlastX LTR_Gypsy 66541 66639 25 + . . scaffold326 flankbed promoter 65602 66399 . + . ID=CGI_10003297; scaffold326 WUBlastX LTR_Gypsy 65512 66399 477 + . . scaffold326 flankbed promoter 65602 66594 . + . ID=CGI_10003297; scaffold326 WUBlastX LTR_Gypsy 65515 66594 333 + . . scaffold327 flankbed promoter 33198 33269 . - . ID=CGI_10002365; scaffold327 TRF Tandem_Repeat 33198 33269 144 + . . scaffold327 flankbed promoter 33339 33372 . - . ID=CGI_10002365; scaffold327 TRF Tandem_Repeat 33339 33372 68 + . . scaffold327 flankbed promoter 33198 33269 . + . ID=CGI_10002366; scaffold327 TRF Tandem_Repeat 33198 33269 144 + . . scaffold327 flankbed promoter 33339 33372 . + . ID=CGI_10002366; scaffold327 TRF Tandem_Repeat 33339 33372 68 + . . scaffold331 flankbed promoter 23618 23790 . - . ID=CGI_10003714; scaffold331 TRF Tandem_Repeat 23618 23790 202 + . . scaffold331 flankbed promoter 23836 23984 . - . ID=CGI_10003714; scaffold331 WUBlastX LINE_L1 23836 24357 57 + . . scaffold331 flankbed promoter 23932 23984 . - . ID=CGI_10003714; scaffold331 WUBlastX LINE_L1-Tx1 23932 24360 331 + . . scaffold331 flankbed promoter 23926 23984 . - . ID=CGI_10003714; scaffold331 WUBlastX LINE_L1-Tx1 23926 24462 142 + . . scaffold332 flankbed promoter 456058 456639 . + . ID=CGI_10020887; scaffold332 WUBlastX LTR_Ngaro 456058 456639 180 + . . scaffold332 flankbed promoter 456160 456639 . + . ID=CGI_10020887; scaffold332 WUBlastX LTR_Ngaro 456160 456639 232 + . . scaffold332 flankbed promoter 657678 657798 . - . ID=CGI_10020895; scaffold332 TRF Tandem_Repeat 657678 657798 140 + . . scaffold332 flankbed promoter 658018 658058 . - . ID=CGI_10020895; scaffold332 TRF Tandem_Repeat 658018 658058 66 + . . scaffold33352 flankbed promoter 12767 12829 . - . ID=CGI_10001053; scaffold33352 WUBlastX LINE_Jockey 12767 13519 143 + . . scaffold334 flankbed promoter 166436 166512 . + . ID=CGI_10025919; scaffold334 TRF Tandem_Repeat 166436 166512 145 + . . scaffold334 flankbed promoter 267187 267565 . - . ID=CGI_10025926; scaffold334 TRF Tandem_Repeat 267187 270642 3687 + . . scaffold334 flankbed promoter 288817 289015 . - . ID=CGI_10025927; scaffold334 TRF Tandem_Repeat 288817 289015 77 + . . scaffold334 flankbed promoter 288793 289087 . - . ID=CGI_10025927; scaffold334 TRF Tandem_Repeat 288793 289087 572 + . . scaffold334 flankbed promoter 330169 330401 . + . ID=CGI_10025932; scaffold334 TRF Tandem_Repeat 330169 330401 175 + . . scaffold334 flankbed promoter 330169 330921 . + . ID=CGI_10025932; scaffold334 TRF Tandem_Repeat 330169 331382 570 + . . scaffold334 flankbed promoter 330402 330921 . + . ID=CGI_10025932; scaffold334 TRF Tandem_Repeat 330402 331388 1258 + . . scaffold334 flankbed promoter 379941 380283 . - . ID=CGI_10025936; scaffold334 TRF Tandem_Repeat 379941 380283 476 + . . scaffold334 flankbed promoter 465974 466128 . - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 465974 466128 165 + . . scaffold334 flankbed promoter 465974 466258 . - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 465974 466361 178 + . . scaffold334 flankbed promoter 466247 466258 . - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 466247 466384 147 + . . scaffold334 flankbed promoter 466247 466258 . - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 466247 466432 137 + . . scaffold334 flankbed promoter 532637 532841 . + . ID=CGI_10025946; scaffold334 TRF Tandem_Repeat 532637 532841 301 + . . scaffold334 flankbed promoter 553856 554038 . - . ID=CGI_10025947; scaffold334 TRF Tandem_Repeat 552951 554038 890 + . . scaffold334 flankbed promoter 553856 554038 . - . ID=CGI_10025947; scaffold334 TRF Tandem_Repeat 552951 554038 463 + . . scaffold334 flankbed promoter 553856 554038 . - . ID=CGI_10025947; scaffold334 TRF Tandem_Repeat 553221 554038 936 + . . scaffold334 flankbed promoter 704347 704399 . + . ID=CGI_10025960; scaffold334 TRF Tandem_Repeat 704347 704399 106 + . . scaffold334 flankbed promoter 704455 704482 . + . ID=CGI_10025960; scaffold334 TRF Tandem_Repeat 704455 704482 56 + . . scaffold334 flankbed promoter 790348 790434 . - . ID=CGI_10025962; scaffold334 WUBlastX LTR_Ngaro 790348 790434 29 - . . scaffold334 flankbed promoter 789599 790372 . - . ID=CGI_10025962; scaffold334 WUBlastX LTR_Ngaro 789572 790372 520 - . . scaffold334 flankbed promoter 818654 818671 . - . ID=CGI_10025963; scaffold334 WUBlastX LTR_Gypsy-Troyk 818393 818671 29 - . . scaffold334 flankbed promoter 869979 870020 . - . ID=CGI_10025964; scaffold334 TRF Tandem_Repeat 869979 870020 84 + . . scaffold33462 flankbed promoter 1750 1878 . + . ID=CGI_10001068; scaffold33462 WUBlastX DNA_hAT-Tip100 1750 1878 82 - . . scaffold335 flankbed promoter 83361 83528 . - . ID=CGI_10017085; scaffold335 TRF Tandem_Repeat 83361 83528 167 + . . scaffold335 flankbed promoter 83361 83528 . - . ID=CGI_10017086; scaffold335 TRF Tandem_Repeat 83361 83528 167 + . . scaffold335 flankbed promoter 274716 274805 . - . ID=CGI_10017099; scaffold335 TRF Tandem_Repeat 274716 274805 126 + . . scaffold335 flankbed promoter 281163 281288 . - . ID=CGI_10017100; scaffold335 WUBlastX LTR_Pao 281163 281288 170 - . . scaffold335 flankbed promoter 281085 281288 . - . ID=CGI_10017100; scaffold335 WUBlastX LTR_Pao 281085 281288 110 - . . scaffold335 flankbed promoter 281549 281605 . - . ID=CGI_10017100; scaffold335 WUBlastX LTR_Pao 281549 281605 55 - . . scaffold335 flankbed promoter 357943 357997 . - . ID=CGI_10017104; scaffold335 TRF Tandem_Repeat 357943 357997 110 + . . scaffold335 flankbed promoter 465245 465284 . - . ID=CGI_10017111; scaffold335 TRF Tandem_Repeat 465245 465437 237 + . . scaffold335 flankbed promoter 465245 465284 . - . ID=CGI_10017111; scaffold335 TRF Tandem_Repeat 465245 465437 237 + . . scaffold335 flankbed promoter 465245 465284 . - . ID=CGI_10017111; scaffold335 TRF Tandem_Repeat 465245 465437 248 + . . scaffold335 flankbed promoter 468736 469055 . + . ID=CGI_10017112; scaffold335 WUBlastX LINE_L1-Tx1 468456 469055 165 - . . scaffold335 flankbed promoter 468852 469100 . + . ID=CGI_10017112; scaffold335 WUBlastX LINE_L1 468852 469100 39 - . . scaffold33584 flankbed promoter 683 818 . + . ID=CGI_10001098; scaffold33584 TRF Tandem_Repeat 683 818 147 + . . scaffold33584 flankbed promoter 683 818 . + . ID=CGI_10001098; scaffold33584 TRF Tandem_Repeat 683 818 175 + . . scaffold33584 flankbed promoter 683 818 . + . ID=CGI_10001099; scaffold33584 TRF Tandem_Repeat 683 818 147 + . . scaffold33584 flankbed promoter 683 818 . + . ID=CGI_10001099; scaffold33584 TRF Tandem_Repeat 683 818 175 + . . scaffold33594 flankbed promoter 14144 14508 . - . ID=CGI_10001107; scaffold33594 WUBlastX LTR_Ngaro 14144 14872 187 + . . scaffold33594 flankbed promoter 13528 14265 . - . ID=CGI_10001107; scaffold33594 WUBlastX LTR_Ngaro 13528 14265 174 + . . scaffold33594 flankbed promoter 13627 14055 . - . ID=CGI_10001107; scaffold33594 WUBlastX LTR_Ngaro 13627 14055 196 + . . scaffold33594 flankbed promoter 14309 14508 . - . ID=CGI_10001107; scaffold33594 WUBlastX LTR_Ngaro 14309 14872 290 + . . scaffold336 flankbed promoter 217927 217998 . - . ID=CGI_10012569; scaffold336 WUBlastX LINE_L2 217927 217998 20 - . . scaffold336 flankbed promoter 298266 298412 . - . ID=CGI_10012577; scaffold336 TRF Tandem_Repeat 298266 298412 82 + . . scaffold336 flankbed promoter 304150 304248 . - . ID=CGI_10012578; scaffold336 TRF Tandem_Repeat 304150 304248 191 + . . scaffold336 flankbed promoter 318868 319596 . - . ID=CGI_10012580; scaffold336 TRF Tandem_Repeat 318868 319596 957 + . . scaffold336 flankbed promoter 318868 319596 . - . ID=CGI_10012580; scaffold336 TRF Tandem_Repeat 318868 319596 1087 + . . scaffold337 flankbed promoter 276163 276210 . - . ID=CGI_10028051; scaffold337 TRF Tandem_Repeat 276163 276210 96 + . . scaffold337 flankbed promoter 372343 372432 . - . ID=CGI_10028056; scaffold337 TRF Tandem_Repeat 372343 372432 135 + . . scaffold337 flankbed promoter 421093 421346 . - . ID=CGI_10028062; scaffold337 TRF Tandem_Repeat 421093 421346 490 + . . scaffold337 flankbed promoter 527326 527350 . + . ID=CGI_10028068; scaffold337 TRF Tandem_Repeat 527326 527350 50 + . . scaffold337 flankbed promoter 527643 527682 . + . ID=CGI_10028068; scaffold337 TRF Tandem_Repeat 527643 527682 71 + . . scaffold337 flankbed promoter 527926 527956 . + . ID=CGI_10028068; scaffold337 TRF Tandem_Repeat 527926 527956 55 + . . scaffold337 flankbed promoter 616245 616320 . + . ID=CGI_10028072; scaffold337 TRF Tandem_Repeat 616245 616320 73 + . . scaffold337 flankbed promoter 1048238 1048266 . - . ID=CGI_10028090; scaffold337 TRF Tandem_Repeat 1048238 1048266 58 + . . scaffold337 flankbed promoter 1271281 1271343 . - . ID=CGI_10028103; scaffold337 TRF Tandem_Repeat 1271281 1271343 108 + . . scaffold337 flankbed promoter 1434622 1434661 . - . ID=CGI_10028113; scaffold337 TRF Tandem_Repeat 1434622 1434661 73 + . . scaffold337 flankbed promoter 1434960 1435070 . - . ID=CGI_10028113; scaffold337 WUBlastX DNA_Harbinger 1434960 1435157 88 - . . scaffold337 flankbed promoter 1434873 1435070 . - . ID=CGI_10028113; scaffold337 WUBlastX DNA_Harbinger 1434873 1435139 64 - . . scaffold337 flankbed promoter 1505078 1505503 . + . ID=CGI_10028122; scaffold337 WUBlastX LINE_RTE-X 1505078 1505503 78 - . . scaffold337 flankbed promoter 1505050 1505503 . + . ID=CGI_10028122; scaffold337 WUBlastX LINE_RTE-X 1504994 1505503 73 - . . scaffold337 flankbed promoter 1505489 1505860 . + . ID=CGI_10028122; scaffold337 WUBlastX LINE_RTE-X 1505489 1505860 61 - . . scaffold33704 flankbed promoter 9783 9815 . + . ID=CGI_10001119; scaffold33704 WUBlastX LTR_DIRS 9783 10508 579 + . . scaffold33704 flankbed promoter 9019 9564 . + . ID=CGI_10001119; scaffold33704 WUBlastX LTR_DIRS 9019 9564 294 + . . scaffold33704 flankbed promoter 9578 9766 . + . ID=CGI_10001119; scaffold33704 WUBlastX LTR_DIRS 9578 9766 84 + . . scaffold338 flankbed promoter 6275 6315 . + . ID=CGI_10011182; scaffold338 TRF Tandem_Repeat 6275 6315 82 + . . scaffold338 flankbed promoter 180957 181058 . + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 180957 181058 177 + . . scaffold338 flankbed promoter 257644 257678 . + . ID=CGI_10011189; scaffold338 TRF Tandem_Repeat 257644 257678 52 + . . scaffold338 flankbed promoter 257409 257471 . + . ID=CGI_10011189; scaffold338 WUBlastX LINE_RTE-X 257127 257471 85 + . . scaffold338 flankbed promoter 258933 259328 . + . ID=CGI_10011190; scaffold338 WUBlastX DNA_Academ 258933 259820 434 + . . scaffold338 flankbed promoter 258409 258930 . + . ID=CGI_10011190; scaffold338 WUBlastX DNA_Academ 258409 258930 121 + . . scaffold33832 flankbed promoter 12758 12784 . + . ID=CGI_10001154; scaffold33832 WUBlastX DNA_Harbinger 12758 13150 145 + . . scaffold33832 flankbed promoter 13687 13741 . + . ID=CGI_10001155; scaffold33832 TRF Tandem_Repeat 13687 13741 69 + . . scaffold33832 flankbed promoter 13976 14011 . + . ID=CGI_10001155; scaffold33832 TRF Tandem_Repeat 13976 14011 72 + . . scaffold33924 flankbed promoter 319 549 . - . ID=CGI_10001171; scaffold33924 WUBlastX DNA_MuDR 319 549 48 + . . scaffold33924 flankbed promoter 304 585 . - . ID=CGI_10001171; scaffold33924 WUBlastX DNA_MuDR 304 585 48 + . . scaffold33980 flankbed promoter 1943 1981 . + . ID=CGI_10001168; scaffold33980 TRF Tandem_Repeat 1943 1981 51 + . . scaffold34 flankbed promoter 84900 84917 . - . ID=CGI_10015929; scaffold34 WUBlastX LINE_L1 84588 84917 23 - . . scaffold340 flankbed promoter 1441 1486 . - . ID=CGI_10011092; scaffold340 TRF Tandem_Repeat 1441 1486 92 + . . scaffold340 flankbed promoter 217079 217275 . - . ID=CGI_10011105; scaffold340 WUBlastX DNA_IS4EU 217079 217495 180 + . . scaffold340 flankbed promoter 240422 240467 . - . ID=CGI_10011110; scaffold340 TRF Tandem_Repeat 240422 240467 92 + . . scaffold34016 flankbed promoter 14387 14407 . - . ID=CGI_10001181; scaffold34016 TRF Tandem_Repeat 14387 14438 95 + . . scaffold34016 flankbed promoter 4156 4187 . + . ID=CGI_10001182; scaffold34016 TRF Tandem_Repeat 4156 4187 64 + . . scaffold34144 flankbed promoter 795 924 . + . ID=CGI_10001219; scaffold34144 WUBlastX DNA_Maverick 754 924 78 - . . scaffold34144 flankbed promoter 795 1131 . + . ID=CGI_10001219; scaffold34144 WUBlastX DNA_Maverick 754 1131 50 - . . scaffold34144 flankbed promoter 795 984 . + . ID=CGI_10001219; scaffold34144 WUBlastX LTR_Copia 676 984 23 - . . scaffold34244 flankbed promoter 151 474 . + . ID=CGI_10001252; scaffold34244 WUBlastX LTR_DIRS 151 474 81 + . . scaffold34244 flankbed promoter 679 867 . + . ID=CGI_10001252; scaffold34244 WUBlastX LTR_DIRS 679 867 49 + . . scaffold34282 flankbed promoter 14938 15004 . - . ID=CGI_10001256; scaffold34282 TRF Tandem_Repeat 14938 15004 89 + . . scaffold34282 flankbed promoter 15024 15490 . - . ID=CGI_10001256; scaffold34282 WUBlastX LINE_RTE-X 15024 15875 323 - . . scaffold34282 flankbed promoter 15027 15490 . - . ID=CGI_10001256; scaffold34282 WUBlastX LINE_RTE-X 15027 16337 304 - . . scaffold343 flankbed promoter 143848 143914 . - . ID=CGI_10021744; scaffold343 TRF Tandem_Repeat 143848 143914 80 + . . scaffold343 flankbed promoter 143848 143912 . - . ID=CGI_10021744; scaffold343 TRF Tandem_Repeat 143848 143912 94 + . . scaffold343 flankbed promoter 340895 340993 . - . ID=CGI_10021750; scaffold343 WUBlastX LINE_CR1 340895 340993 55 - . . scaffold343 flankbed promoter 340752 340901 . - . ID=CGI_10021750; scaffold343 WUBlastX LINE_RTE-X 340752 340901 119 - . . scaffold343 flankbed promoter 340895 341014 . - . ID=CGI_10021750; scaffold343 WUBlastX LINE_CR1 340895 341014 27 - . . scaffold343 flankbed promoter 340752 340949 . - . ID=CGI_10021750; scaffold343 WUBlastX LINE_L2 340752 340949 84 - . . scaffold343 flankbed promoter 340671 340901 . - . ID=CGI_10021750; scaffold343 WUBlastX LINE_RTE-X 340671 340901 99 - . . scaffold343 flankbed promoter 340141 340662 . - . ID=CGI_10021750; scaffold343 WUBlastX LINE_RTE-X 339295 340662 430 - . . scaffold343 flankbed promoter 590736 591083 . - . ID=CGI_10021765; scaffold343 WUBlastX LINE_L1 590736 591083 60 - . . scaffold343 flankbed promoter 637035 637505 . - . ID=CGI_10021768; scaffold343 WUBlastX DNA_Maverick 637035 637505 198 - . . scaffold343 flankbed promoter 636939 637553 . - . ID=CGI_10021768; scaffold343 WUBlastX DNA_Maverick 636939 637553 103 - . . scaffold343 flankbed promoter 637035 637505 . + . ID=CGI_10021770; scaffold343 WUBlastX DNA_Maverick 637035 637505 198 - . . scaffold343 flankbed promoter 637007 637553 . + . ID=CGI_10021770; scaffold343 WUBlastX DNA_Maverick 636939 637553 103 - . . scaffold343 flankbed promoter 643748 643951 . + . ID=CGI_10021772; scaffold343 WUBlastX DNA_Maverick 643748 643960 79 - . . scaffold343 flankbed promoter 643748 643951 . + . ID=CGI_10021772; scaffold343 WUBlastX DNA_Maverick 643748 643999 45 - . . scaffold343 flankbed promoter 648143 648177 . + . ID=CGI_10021773; scaffold343 TRF Tandem_Repeat 648143 648177 70 + . . scaffold343 flankbed promoter 647729 647877 . + . ID=CGI_10021773; scaffold343 WUBlastX LINE_RTE-BovB 647014 647877 354 - . . scaffold343 flankbed promoter 647891 648127 . + . ID=CGI_10021773; scaffold343 WUBlastX LINE_RTE-BovB 647891 648127 99 - . . scaffold343 flankbed promoter 648177 648224 . + . ID=CGI_10021773; scaffold343 WUBlastX LINE_L2 648177 648224 21 - . . scaffold343 flankbed promoter 647870 647947 . + . ID=CGI_10021773; scaffold343 WUBlastX LINE_L1 647870 647947 39 - . . scaffold34572 flankbed promoter 19078 19095 . - . ID=CGI_10001316; scaffold34572 TRF Tandem_Repeat 19078 19170 87 + . . scaffold34572 flankbed promoter 19088 19095 . - . ID=CGI_10001316; scaffold34572 TRF Tandem_Repeat 19088 19178 101 + . . scaffold34594 flankbed promoter 15902 15968 . + . ID=CGI_10001318; scaffold34594 TRF Tandem_Repeat 15902 15968 134 + . . scaffold34694 flankbed promoter 9004 9031 . + . ID=CGI_10001356; scaffold34694 TRF Tandem_Repeat 9004 9031 56 + . . scaffold34694 flankbed promoter 9085 9147 . + . ID=CGI_10001356; scaffold34694 TRF Tandem_Repeat 9085 9147 117 + . . scaffold347 flankbed promoter 11778 11834 . + . ID=CGI_10021775; scaffold347 TRF Tandem_Repeat 11778 11834 114 + . . scaffold347 flankbed promoter 113515 113568 . - . ID=CGI_10021777; scaffold347 TRF Tandem_Repeat 113515 113568 99 + . . scaffold347 flankbed promoter 156704 156916 . - . ID=CGI_10021781; scaffold347 WUBlastX DNA_Chapaev 156704 156916 25 - . . scaffold347 flankbed promoter 295656 295699 . + . ID=CGI_10021791; scaffold347 TRF Tandem_Repeat 295656 295699 88 + . . scaffold347 flankbed promoter 310525 310592 . - . ID=CGI_10021792; scaffold347 TRF Tandem_Repeat 310525 310592 136 + . . scaffold347 flankbed promoter 660280 660354 . - . ID=CGI_10021805; scaffold347 TRF Tandem_Repeat 660280 660354 125 + . . scaffold348 flankbed promoter 3166 3201 . + . ID=CGI_10022968; scaffold348 TRF Tandem_Repeat 3166 3201 72 + . . scaffold348 flankbed promoter 616138 616192 . + . ID=CGI_10022991; scaffold348 TRF Tandem_Repeat 616138 616192 110 + . . scaffold34910 flankbed promoter 3687 3968 . - . ID=CGI_10001376; scaffold34910 WUBlastX LTR_Gypsy 3687 3968 48 - . . scaffold34910 flankbed promoter 3777 4186 . - . ID=CGI_10001376; scaffold34910 WUBlastX LTR_Gypsy 3777 4538 488 - . . scaffold35084 flankbed promoter 10974 11090 . - . ID=CGI_10001417; scaffold35084 WUBlastX LTR_Gypsy 10974 11090 38 + . . scaffold35084 flankbed promoter 11172 11199 . - . ID=CGI_10001417; scaffold35084 WUBlastX LTR_Gypsy 11172 11444 75 + . . scaffold35084 flankbed promoter 11016 11117 . - . ID=CGI_10001417; scaffold35084 WUBlastX LTR_Gypsy 11016 11117 31 + . . scaffold351 flankbed promoter 43778 43814 . - . ID=CGI_10022589; scaffold351 TRF Tandem_Repeat 43778 43814 74 + . . scaffold351 flankbed promoter 105322 105430 . - . ID=CGI_10022591; scaffold351 TRF Tandem_Repeat 105322 105430 191 + . . scaffold351 flankbed promoter 112583 112628 . - . ID=CGI_10022592; scaffold351 TRF Tandem_Repeat 112583 112628 92 + . . scaffold351 flankbed promoter 282355 282414 . - . ID=CGI_10022600; scaffold351 WUBlastX DNA_Maverick 282355 282585 36 + . . scaffold351 flankbed promoter 287286 287622 . + . ID=CGI_10022601; scaffold351 WUBlastX DNA_Maverick 287035 287622 375 - . . scaffold351 flankbed promoter 287286 287733 . + . ID=CGI_10022601; scaffold351 WUBlastX DNA_Maverick 287221 287733 55 - . . scaffold351 flankbed promoter 302841 303122 . - . ID=CGI_10022603; scaffold351 WUBlastX LTR_Pao 302841 303122 132 - . . scaffold351 flankbed promoter 302486 302860 . - . ID=CGI_10022603; scaffold351 WUBlastX LTR_Pao 302486 302860 220 - . . scaffold351 flankbed promoter 628153 628190 . - . ID=CGI_10022616; scaffold351 TRF Tandem_Repeat 628153 628190 76 + . . scaffold35162 flankbed promoter 21005 21087 . - . ID=CGI_10001426; scaffold35162 TRF Tandem_Repeat 21005 21087 127 + . . scaffold35162 flankbed promoter 21007 21067 . - . ID=CGI_10001426; scaffold35162 TRF Tandem_Repeat 21007 21067 68 + . . scaffold352 flankbed promoter 189729 189962 . - . ID=CGI_10012249; scaffold352 WUBlastX LTR_Copia 189729 189962 56 - . . scaffold352 flankbed promoter 308630 308688 . + . ID=CGI_10012251; scaffold352 TRF Tandem_Repeat 308630 308688 118 + . . scaffold35230 flankbed promoter 20467 20688 . - . ID=CGI_10001438; scaffold35230 WUBlastX LTR_Ngaro 20467 20688 65 - . . scaffold35230 flankbed promoter 20609 20835 . - . ID=CGI_10001438; scaffold35230 WUBlastX LTR_Ngaro 20609 21712 144 - . . scaffold35286 flankbed promoter 5546 5614 . + . ID=CGI_10001451; scaffold35286 WUBlastX LINE_R1 5546 5614 24 + . . scaffold35332 flankbed promoter 4033 4047 . - . ID=CGI_10001469; scaffold35332 WUBlastX LINE_CR1 3781 4047 85 - . . scaffold35332 flankbed promoter 11584 12113 . + . ID=CGI_10001470; scaffold35332 TRF Tandem_Repeat 11584 12136 874 + . . scaffold35336 flankbed promoter 10790 11020 . - . ID=CGI_10001479; scaffold35336 WUBlastX DNA_TcMar-Tc1 10790 11020 51 - . . scaffold35336 flankbed promoter 10746 10817 . - . ID=CGI_10001479; scaffold35336 WUBlastX DNA_TcMar-Tc1 10746 10817 42 - . . scaffold35336 flankbed promoter 10966 11064 . - . ID=CGI_10001479; scaffold35336 WUBlastX DNA_TcMar-Tc1 10966 11064 25 - . . scaffold35336 flankbed promoter 5616 6371 . + . ID=CGI_10001480; scaffold35336 WUBlastX DNA_En-Spm 5616 7898 1261 + . . scaffold354 flankbed promoter 148285 148581 . - . ID=CGI_10025702; scaffold354 TRF Tandem_Repeat 148285 148581 303 + . . scaffold354 flankbed promoter 354060 354673 . - . ID=CGI_10025716; scaffold354 TRF Tandem_Repeat 354060 354958 1604 + . . scaffold354 flankbed promoter 618324 619087 . - . ID=CGI_10025729; scaffold354 TRF Tandem_Repeat 618324 619087 392 + . . scaffold354 flankbed promoter 618405 619039 . - . ID=CGI_10025729; scaffold354 TRF Tandem_Repeat 618405 619039 454 + . . scaffold354 flankbed promoter 618512 619169 . - . ID=CGI_10025729; scaffold354 TRF Tandem_Repeat 618512 621265 1026 + . . scaffold354 flankbed promoter 618473 619169 . - . ID=CGI_10025729; scaffold354 TRF Tandem_Repeat 618473 621397 916 + . . scaffold354 flankbed promoter 619164 619169 . - . ID=CGI_10025729; scaffold354 TRF Tandem_Repeat 619164 619496 127 + . . scaffold354 flankbed promoter 644295 644353 . - . ID=CGI_10025730; scaffold354 TRF Tandem_Repeat 644295 644353 100 + . . scaffold35438 flankbed promoter 22458 23060 . - . ID=CGI_10001514; scaffold35438 WUBlastX LTR_Pao 22458 23060 50 + . . scaffold35438 flankbed promoter 22373 22679 . - . ID=CGI_10001514; scaffold35438 WUBlastX LTR_Gypsy 22332 22679 51 + . . scaffold35438 flankbed promoter 22458 22652 . + . ID=CGI_10001515; scaffold35438 WUBlastX LTR_Pao 22458 23060 50 + . . scaffold35438 flankbed promoter 22332 22652 . + . ID=CGI_10001515; scaffold35438 WUBlastX LTR_Gypsy 22332 22679 51 + . . scaffold35446 flankbed promoter 8187 8251 . - . ID=CGI_10001508; scaffold35446 TRF Tandem_Repeat 8187 8251 130 + . . scaffold35478 flankbed promoter 25004 25031 . - . ID=CGI_10001535; scaffold35478 TRF Tandem_Repeat 25004 25031 56 + . . scaffold35640 flankbed promoter 11851 12012 . + . ID=CGI_10001575; scaffold35640 TRF Tandem_Repeat 11729 12012 426 + . . scaffold35640 flankbed promoter 14635 14811 . + . ID=CGI_10001576; scaffold35640 WUBlastX LTR_Gypsy 14632 14811 77 + . . scaffold35640 flankbed promoter 14970 15212 . + . ID=CGI_10001576; scaffold35640 WUBlastX LTR_Gypsy-Gmr1 14970 15212 32 + . . scaffold35640 flankbed promoter 14635 14769 . + . ID=CGI_10001576; scaffold35640 WUBlastX LTR_Gypsy 14593 14769 87 + . . scaffold35640 flankbed promoter 14641 14781 . + . ID=CGI_10001576; scaffold35640 WUBlastX LTR_Gypsy-Cigr 14641 14781 154 + . . scaffold35640 flankbed promoter 14970 15155 . + . ID=CGI_10001576; scaffold35640 WUBlastX LTR_Gypsy-Cigr 14970 15155 92 + . . scaffold35640 flankbed promoter 14813 14992 . + . ID=CGI_10001576; scaffold35640 WUBlastX LTR_Gypsy 14813 14992 28 + . . scaffold35640 flankbed promoter 14937 15146 . + . ID=CGI_10001576; scaffold35640 WUBlastX LTR_Gypsy 14937 15146 36 + . . scaffold35640 flankbed promoter 14635 14775 . + . ID=CGI_10001576; scaffold35640 WUBlastX LTR_Gypsy 14482 14775 73 + . . scaffold358 flankbed promoter 12293 12356 . - . ID=CGI_10013016; scaffold358 TRF Tandem_Repeat 12293 12356 128 + . . scaffold358 flankbed promoter 12775 12803 . - . ID=CGI_10013016; scaffold358 TRF Tandem_Repeat 12775 12803 58 + . . scaffold358 flankbed promoter 12775 12803 . + . ID=CGI_10013017; scaffold358 TRF Tandem_Repeat 12775 12803 58 + . . scaffold35896 flankbed promoter 26476 27444 . - . ID=CGI_10001642; scaffold35896 WUBlastX LINE_RTE-X 26476 28569 353 - . . scaffold35900 flankbed promoter 13255 13275 . + . ID=CGI_10001645; scaffold35900 TRF Tandem_Repeat 11968 13275 1584 + . . scaffold35902 flankbed promoter 28474 28809 . - . ID=CGI_10001652; scaffold35902 WUBlastX LTR_Gypsy-Cigr 28474 28809 124 + . . scaffold35902 flankbed promoter 28555 28809 . - . ID=CGI_10001652; scaffold35902 WUBlastX LTR_Gypsy 28555 28809 164 + . . scaffold35902 flankbed promoter 28597 28809 . - . ID=CGI_10001652; scaffold35902 WUBlastX LTR_Gypsy 28597 28809 169 + . . scaffold35986 flankbed promoter 21028 21089 . + . ID=CGI_10001707; scaffold35986 TRF Tandem_Repeat 21028 21089 88 + . . scaffold35994 flankbed promoter 20382 20464 . + . ID=CGI_10001675; scaffold35994 TRF Tandem_Repeat 20325 20464 271 + . . scaffold36 flankbed promoter 2159 2518 . + . ID=CGI_10001028; scaffold36 WUBlastX LTR_ERV1 2159 2527 59 + . . scaffold36 flankbed promoter 1709 2458 . + . ID=CGI_10001028; scaffold36 WUBlastX LTR_Gypsy 1709 2458 36 + . . scaffold36020 flankbed promoter 21622 21804 . - . ID=CGI_10001738; scaffold36020 WUBlastX LTR_Gypsy 21622 21804 81 - . . scaffold36020 flankbed promoter 21601 21825 . - . ID=CGI_10001738; scaffold36020 WUBlastX LTR_Gypsy-Cigr 21601 21825 54 - . . scaffold36022 flankbed promoter 10579 10888 . - . ID=CGI_10001740; scaffold36022 TRF Tandem_Repeat 10579 10888 286 + . . scaffold36022 flankbed promoter 29354 29884 . - . ID=CGI_10001741; scaffold36022 WUBlastX LINE_RTE-X 29354 29884 95 + . . scaffold36022 flankbed promoter 29877 30059 . - . ID=CGI_10001741; scaffold36022 WUBlastX LINE_L2 29877 30059 60 + . . scaffold361 flankbed promoter 90455 90615 . - . ID=CGI_10020844; scaffold361 TRF Tandem_Repeat 90455 90687 367 + . . scaffold361 flankbed promoter 195429 195970 . + . ID=CGI_10020849; scaffold361 TRF Tandem_Repeat 195056 195970 572 + . . scaffold361 flankbed promoter 195429 195967 . + . ID=CGI_10020849; scaffold361 TRF Tandem_Repeat 195056 195967 667 + . . scaffold361 flankbed promoter 292497 292537 . + . ID=CGI_10020856; scaffold361 TRF Tandem_Repeat 292497 292537 64 + . . scaffold361 flankbed promoter 292618 292657 . + . ID=CGI_10020856; scaffold361 TRF Tandem_Repeat 292618 292657 80 + . . scaffold361 flankbed promoter 333925 334137 . - . ID=CGI_10020859; scaffold361 TRF Tandem_Repeat 333925 334642 1182 + . . scaffold361 flankbed promoter 650673 651177 . + . ID=CGI_10020875; scaffold361 TRF Tandem_Repeat 650673 651177 295 + . . scaffold36140 flankbed promoter 6151 6204 . + . ID=CGI_10001795; scaffold36140 TRF Tandem_Repeat 6151 6204 108 + . . scaffold363 flankbed promoter 2890 2956 . + . ID=CGI_10019283; scaffold363 TRF Tandem_Repeat 2890 2956 125 + . . scaffold363 flankbed promoter 48446 48636 . + . ID=CGI_10019285; scaffold363 TRF Tandem_Repeat 48446 48636 139 + . . scaffold363 flankbed promoter 48756 48883 . + . ID=CGI_10019285; scaffold363 TRF Tandem_Repeat 48756 48883 217 + . . scaffold363 flankbed promoter 48433 48942 . + . ID=CGI_10019285; scaffold363 TRF Tandem_Repeat 48433 48942 492 + . . scaffold363 flankbed promoter 48419 48950 . + . ID=CGI_10019285; scaffold363 TRF Tandem_Repeat 48419 48950 168 + . . scaffold363 flankbed promoter 48419 48954 . + . ID=CGI_10019285; scaffold363 TRF Tandem_Repeat 48419 48954 303 + . . scaffold363 flankbed promoter 111780 111863 . - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 111048 111863 388 - . . scaffold363 flankbed promoter 111854 112213 . - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 111854 112213 170 - . . scaffold363 flankbed promoter 166262 166696 . + . ID=CGI_10019293; scaffold363 TRF Tandem_Repeat 165770 166696 1164 + . . scaffold363 flankbed promoter 166858 166923 . + . ID=CGI_10019293; scaffold363 TRF Tandem_Repeat 166858 166923 123 + . . scaffold363 flankbed promoter 166960 167006 . + . ID=CGI_10019293; scaffold363 TRF Tandem_Repeat 166960 167006 85 + . . scaffold363 flankbed promoter 248986 249043 . - . ID=CGI_10019299; scaffold363 WUBlastX LINE_RTE-X 248986 249192 84 + . . scaffold363 flankbed promoter 248986 249043 . - . ID=CGI_10019299; scaffold363 WUBlastX LINE_RTE-X 248986 249303 39 + . . scaffold363 flankbed promoter 296947 296986 . + . ID=CGI_10019302; scaffold363 TRF Tandem_Repeat 296947 296986 59 + . . scaffold363 flankbed promoter 297348 297471 . + . ID=CGI_10019302; scaffold363 TRF Tandem_Repeat 297348 297471 187 + . . scaffold363 flankbed promoter 426225 426497 . + . ID=CGI_10019306; scaffold363 WUBlastX DNA_Academ 426225 426989 363 + . . scaffold36378 flankbed promoter 33281 33973 . - . ID=CGI_10001875; scaffold36378 WUBlastX LINE_RTE-X 33281 33973 154 + . . scaffold36390 flankbed promoter 5706 5805 . + . ID=CGI_10001881; scaffold36390 WUBlastX LTR_Gypsy 5437 5805 86 + . . scaffold36390 flankbed promoter 5706 5811 . + . ID=CGI_10001881; scaffold36390 WUBlastX LTR_Gypsy 5323 5811 78 + . . scaffold36390 flankbed promoter 5706 5805 . + . ID=CGI_10001881; scaffold36390 WUBlastX LTR_Gypsy 5527 5805 90 + . . scaffold36390 flankbed promoter 17515 17757 . - . ID=CGI_10001883; scaffold36390 TRF Tandem_Repeat 17515 17757 137 + . . scaffold36390 flankbed promoter 17521 17757 . - . ID=CGI_10001883; scaffold36390 TRF Tandem_Repeat 17521 17757 158 + . . scaffold36390 flankbed promoter 17515 17757 . + . ID=CGI_10001884; scaffold36390 TRF Tandem_Repeat 17515 17757 137 + . . scaffold36390 flankbed promoter 17521 17757 . + . ID=CGI_10001884; scaffold36390 TRF Tandem_Repeat 17521 17757 158 + . . scaffold36390 flankbed promoter 23456 23737 . + . ID=CGI_10001885; scaffold36390 WUBlastX LTR_Gypsy 23456 23737 101 + . . scaffold36390 flankbed promoter 24270 24458 . + . ID=CGI_10001886; scaffold36390 WUBlastX LTR_Gypsy 24270 24458 23 + . . scaffold36390 flankbed promoter 23542 23737 . + . ID=CGI_10001886; scaffold36390 WUBlastX LTR_Gypsy 23456 23737 101 + . . scaffold364 flankbed promoter 17734 17764 . + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 17734 17764 62 + . . scaffold364 flankbed promoter 319090 319740 . - . ID=CGI_10022689; scaffold364 WUBlastX DNA_Maverick 319090 319740 299 - . . scaffold364 flankbed promoter 319949 319990 . - . ID=CGI_10022689; scaffold364 WUBlastX DNA_Maverick 319949 320146 105 + . . scaffold364 flankbed promoter 319726 319959 . - . ID=CGI_10022689; scaffold364 WUBlastX LINE_RTE-X 319726 319959 47 + . . scaffold364 flankbed promoter 319438 319740 . + . ID=CGI_10022690; scaffold364 WUBlastX DNA_Maverick 319090 319740 299 - . . scaffold364 flankbed promoter 319949 320146 . + . ID=CGI_10022690; scaffold364 WUBlastX DNA_Maverick 319949 320146 105 + . . scaffold364 flankbed promoter 319726 319959 . + . ID=CGI_10022690; scaffold364 WUBlastX LINE_RTE-X 319726 319959 47 + . . scaffold364 flankbed promoter 514432 514501 . + . ID=CGI_10022700; scaffold364 TRF Tandem_Repeat 514432 514501 72 + . . scaffold364 flankbed promoter 611950 611957 . + . ID=CGI_10022705; scaffold364 TRF Tandem_Repeat 611906 611957 104 + . . scaffold364 flankbed promoter 716190 716417 . - . ID=CGI_10022710; scaffold364 WUBlastX DNA_Crypton 716190 716417 21 - . . scaffold364 flankbed promoter 716410 716484 . - . ID=CGI_10022710; scaffold364 WUBlastX DNA_Crypton 716410 716484 28 - . . scaffold364 flankbed promoter 780917 780973 . - . ID=CGI_10022712; scaffold364 TRF Tandem_Repeat 780917 780973 87 + . . scaffold36410 flankbed promoter 22649 22682 . - . ID=CGI_10001887; scaffold36410 TRF Tandem_Repeat 22649 22682 68 + . . scaffold36410 flankbed promoter 22075 22329 . - . ID=CGI_10001887; scaffold36410 WUBlastX DNA_NOF 22075 22329 39 + . . scaffold36450 flankbed promoter 2992 3190 . + . ID=CGI_10001979; scaffold36450 WUBlastX LINE_L1-Tx1 2537 3190 502 - . . scaffold36450 flankbed promoter 3190 3498 . + . ID=CGI_10001979; scaffold36450 WUBlastX LINE_L1 3190 3498 78 - . . scaffold36450 flankbed promoter 3190 3447 . + . ID=CGI_10001979; scaffold36450 WUBlastX LINE_L1 3190 3447 97 - . . scaffold36450 flankbed promoter 3202 3642 . + . ID=CGI_10001979; scaffold36450 WUBlastX LINE_L1 3202 3642 44 - . . scaffold36450 flankbed promoter 3810 3860 . + . ID=CGI_10001979; scaffold36450 WUBlastX LINE_RTE-BovB 3810 3860 21 - . . scaffold36450 flankbed promoter 2992 3355 . + . ID=CGI_10001979; scaffold36450 WUBlastX LINE_L1 2540 3355 205 - . . scaffold36452 flankbed promoter 3 32 . + . ID=CGI_10001910; scaffold36452 TRF Tandem_Repeat 3 32 60 + . . scaffold36452 flankbed promoter 212 261 . + . ID=CGI_10001910; scaffold36452 TRF Tandem_Repeat 212 261 57 + . . scaffold36452 flankbed promoter 545 570 . + . ID=CGI_10001910; scaffold36452 TRF Tandem_Repeat 545 570 52 + . . scaffold36452 flankbed promoter 545 570 . + . ID=CGI_10001911; scaffold36452 TRF Tandem_Repeat 545 570 52 + . . scaffold365 flankbed promoter 405044 405100 . - . ID=CGI_10022733; scaffold365 TRF Tandem_Repeat 405044 405100 114 + . . scaffold365 flankbed promoter 438633 438686 . + . ID=CGI_10022736; scaffold365 TRF Tandem_Repeat 438633 438686 108 + . . scaffold365 flankbed promoter 473030 473074 . - . ID=CGI_10022739; scaffold365 TRF Tandem_Repeat 473030 473074 90 + . . scaffold365 flankbed promoter 581478 581558 . - . ID=CGI_10022744; scaffold365 WUBlastX DNA_Kolobok-Hyd 581478 581558 22 - . . scaffold365 flankbed promoter 720260 720410 . - . ID=CGI_10022754; scaffold365 WUBlastX LINE_RTE-BovB 720260 720610 94 - . . scaffold365 flankbed promoter 720473 720715 . + . ID=CGI_10022755; scaffold365 WUBlastX LINE_RTE-BovB 720473 720715 65 - . . scaffold365 flankbed promoter 720260 720610 . + . ID=CGI_10022755; scaffold365 WUBlastX LINE_RTE-BovB 720260 720610 94 - . . scaffold36598 flankbed promoter 31363 31503 . - . ID=CGI_10002013; scaffold36598 WUBlastX LTR_Ngaro 31363 31503 110 - . . scaffold36598 flankbed promoter 31321 31551 . - . ID=CGI_10002013; scaffold36598 WUBlastX LTR_Ngaro 31321 31551 77 - . . scaffold366 flankbed promoter 123310 123348 . + . ID=CGI_10007777; scaffold366 TRF Tandem_Repeat 123310 123348 51 + . . scaffold36624 flankbed promoter 35369 35518 . + . ID=CGI_10002024; scaffold36624 WUBlastX LINE_RTE-X 35369 35518 22 - . . scaffold36624 flankbed promoter 35339 35488 . + . ID=CGI_10002024; scaffold36624 WUBlastX LINE_RTE-X 35339 35488 45 - . . scaffold36624 flankbed promoter 35234 35310 . + . ID=CGI_10002024; scaffold36624 WUBlastX LINE_RTE-X 35008 35310 111 - . . scaffold36698 flankbed promoter 7923 7984 . - . ID=CGI_10002014; scaffold36698 TRF Tandem_Repeat 7923 7989 66 + . . scaffold36794 flankbed promoter 37022 37144 . + . ID=CGI_10002120; scaffold36794 WUBlastX DNA_Maverick 37022 37144 48 + . . scaffold36794 flankbed promoter 37223 37468 . + . ID=CGI_10002120; scaffold36794 WUBlastX DNA_Maverick 37223 37468 70 + . . scaffold36794 flankbed promoter 37124 37459 . + . ID=CGI_10002120; scaffold36794 WUBlastX DNA_Maverick 37124 37459 63 + . . scaffold36794 flankbed promoter 36805 36924 . + . ID=CGI_10002120; scaffold36794 WUBlastX DNA_Maverick 36805 36924 42 + . . scaffold368 flankbed promoter 92305 92562 . - . ID=CGI_10018696; scaffold368 WUBlastX DNA_IS4EU 92305 92562 29 - . . scaffold368 flankbed promoter 116751 116803 . - . ID=CGI_10018697; scaffold368 TRF Tandem_Repeat 116751 116803 106 + . . scaffold368 flankbed promoter 219340 219390 . - . ID=CGI_10018705; scaffold368 TRF Tandem_Repeat 219340 219390 102 + . . scaffold368 flankbed promoter 228217 228274 . - . ID=CGI_10018706; scaffold368 TRF Tandem_Repeat 228217 228274 107 + . . scaffold36802 flankbed promoter 2981 2992 . + . ID=CGI_10002073; scaffold36802 WUBlastX DNA_Academ 2981 3289 29 + . . scaffold36862 flankbed promoter 5513 6107 . - . ID=CGI_10002158; scaffold36862 WUBlastX DNA_En-Spm 5513 6367 141 - . . scaffold36862 flankbed promoter 5513 5956 . - . ID=CGI_10002158; scaffold36862 WUBlastX DNA_En-Spm 5513 5956 148 - . . scaffold36862 flankbed promoter 5228 5956 . - . ID=CGI_10002158; scaffold36862 WUBlastX DNA_En-Spm 5228 5956 143 - . . scaffold36862 flankbed promoter 11525 11774 . - . ID=CGI_10002159; scaffold36862 TRF Tandem_Repeat 11525 11774 326 + . . scaffold36862 flankbed promoter 18945 18974 . - . ID=CGI_10002160; scaffold36862 TRF Tandem_Repeat 18945 18974 60 + . . scaffold36866 flankbed promoter 27392 27439 . + . ID=CGI_10002181; scaffold36866 TRF Tandem_Repeat 27392 27439 96 + . . scaffold36898 flankbed promoter 17339 17662 . + . ID=CGI_10002177; scaffold36898 WUBlastX DNA_Maverick 17339 17662 92 + . . scaffold369 flankbed promoter 98983 99018 . + . ID=CGI_10006955; scaffold369 TRF Tandem_Repeat 98983 99018 72 + . . scaffold36928 flankbed promoter 2453 2528 . + . ID=CGI_10002192; scaffold36928 TRF Tandem_Repeat 2453 2528 152 + . . scaffold36928 flankbed promoter 9574 9610 . + . ID=CGI_10002193; scaffold36928 TRF Tandem_Repeat 9574 9610 74 + . . scaffold36936 flankbed promoter 25593 25649 . - . ID=CGI_10002182; scaffold36936 TRF Tandem_Repeat 25593 25649 105 + . . scaffold370 flankbed promoter 234377 234576 . - . ID=CGI_10025532; scaffold370 TRF Tandem_Repeat 234377 234576 161 + . . scaffold370 flankbed promoter 303574 303683 . + . ID=CGI_10025534; scaffold370 WUBlastX DNA_PiggyBac 303574 303699 26 - . . scaffold370 flankbed promoter 361840 361919 . + . ID=CGI_10025539; scaffold370 TRF Tandem_Repeat 361840 361919 133 + . . scaffold370 flankbed promoter 501831 501877 . + . ID=CGI_10025547; scaffold370 TRF Tandem_Repeat 501831 501877 94 + . . scaffold370 flankbed promoter 505649 505718 . + . ID=CGI_10025548; scaffold370 TRF Tandem_Repeat 505625 505718 100 + . . scaffold370 flankbed promoter 505947 506042 . + . ID=CGI_10025548; scaffold370 TRF Tandem_Repeat 505947 506042 176 + . . scaffold370 flankbed promoter 589206 589247 . + . ID=CGI_10025551; scaffold370 TRF Tandem_Repeat 589206 589247 84 + . . scaffold370 flankbed promoter 607285 607426 . - . ID=CGI_10025553; scaffold370 TRF Tandem_Repeat 607285 607426 207 + . . scaffold370 flankbed promoter 624665 624702 . + . ID=CGI_10025556; scaffold370 TRF Tandem_Repeat 624665 624702 76 + . . scaffold370 flankbed promoter 837690 837790 . + . ID=CGI_10025566; scaffold370 TRF Tandem_Repeat 837690 837790 53 + . . scaffold370 flankbed promoter 838364 838398 . + . ID=CGI_10025566; scaffold370 TRF Tandem_Repeat 838364 838398 52 + . . scaffold370 flankbed promoter 875596 875675 . + . ID=CGI_10025567; scaffold370 TRF Tandem_Repeat 875463 875675 200 + . . scaffold370 flankbed promoter 875596 875686 . + . ID=CGI_10025567; scaffold370 TRF Tandem_Repeat 875466 875686 234 + . . scaffold370 flankbed promoter 897823 897929 . + . ID=CGI_10025568; scaffold370 TRF Tandem_Repeat 897823 897929 115 + . . scaffold37028 flankbed promoter 6012 6617 . + . ID=CGI_10002244; scaffold37028 WUBlastX DNA_Kolobok-IS4 6012 6617 69 + . . scaffold37028 flankbed promoter 6075 6587 . + . ID=CGI_10002244; scaffold37028 WUBlastX DNA_IS4EU 6075 6587 114 + . . scaffold37062 flankbed promoter 4551 4584 . + . ID=CGI_10002249; scaffold37062 TRF Tandem_Repeat 4551 4584 59 + . . scaffold37064 flankbed promoter 27094 27331 . - . ID=CGI_10002259; scaffold37064 WUBlastX DNA_Kolobok-Hyd 27094 27891 52 - . . scaffold37064 flankbed promoter 28613 28670 . - . ID=CGI_10002260; scaffold37064 TRF Tandem_Repeat 28613 28670 116 + . . scaffold37068 flankbed promoter 1409 1612 . + . ID=CGI_10002224; scaffold37068 WUBlastX LINE_RTE-X 1409 1612 82 - . . scaffold37068 flankbed promoter 1295 1597 . + . ID=CGI_10002224; scaffold37068 WUBlastX LINE_RTE-X 1295 1597 40 - . . scaffold372 flankbed promoter 19060 19065 . + . ID=CGI_10009692; scaffold372 TRF Tandem_Repeat 19005 19065 88 + . . scaffold372 flankbed promoter 143510 143614 . - . ID=CGI_10009703; scaffold372 TRF Tandem_Repeat 143510 143614 142 + . . scaffold372 flankbed promoter 157427 157740 . + . ID=CGI_10009707; scaffold372 TRF Tandem_Repeat 157427 157740 404 + . . scaffold37206 flankbed promoter 10804 10882 . + . ID=CGI_10002305; scaffold37206 TRF Tandem_Repeat 10804 10882 149 + . . scaffold37358 flankbed promoter 16088 16306 . - . ID=CGI_10002325; scaffold37358 TRF Tandem_Repeat 16088 16306 303 + . . scaffold37358 flankbed promoter 16171 16353 . - . ID=CGI_10002325; scaffold37358 TRF Tandem_Repeat 16171 16353 87 + . . scaffold37378 flankbed promoter 42890 42958 . - . ID=CGI_10002348; scaffold37378 TRF Tandem_Repeat 42890 42958 120 + . . scaffold374 flankbed promoter 379625 379677 . + . ID=CGI_10018722; scaffold374 TRF Tandem_Repeat 379617 379677 50 + . . scaffold374 flankbed promoter 505947 506264 . + . ID=CGI_10018726; scaffold374 WUBlastX DNA_Maverick 505947 506264 283 + . . scaffold374 flankbed promoter 505837 505950 . + . ID=CGI_10018726; scaffold374 WUBlastX DNA_Maverick 505837 505950 36 + . . scaffold374 flankbed promoter 505953 506399 . + . ID=CGI_10018726; scaffold374 WUBlastX DNA_Maverick 505953 506399 234 + . . scaffold37424 flankbed promoter 15899 16082 . - . ID=CGI_10002371; scaffold37424 WUBlastX DNA_Harbinger 15867 16082 59 - . . scaffold37432 flankbed promoter 38978 39026 . - . ID=CGI_10002364; scaffold37432 TRF Tandem_Repeat 38978 39026 98 + . . scaffold37532 flankbed promoter 14483 14521 . + . ID=CGI_10002400; scaffold37532 TRF Tandem_Repeat 14483 14521 78 + . . scaffold37558 flankbed promoter 4319 4669 . + . ID=CGI_10002409; scaffold37558 WUBlastX LTR_DIRS 3809 4669 522 + . . scaffold37558 flankbed promoter 9352 9825 . - . ID=CGI_10002410; scaffold37558 WUBlastX LTR_Gypsy 9352 9825 64 - . . scaffold376 flankbed promoter 131882 132174 . - . ID=CGI_10019494; scaffold376 TRF Tandem_Repeat 131882 132174 144 + . . scaffold376 flankbed promoter 283699 283731 . + . ID=CGI_10019501; scaffold376 TRF Tandem_Repeat 283699 283731 50 + . . scaffold376 flankbed promoter 283699 283731 . + . ID=CGI_10019502; scaffold376 TRF Tandem_Repeat 283699 283731 50 + . . scaffold376 flankbed promoter 289322 290010 . + . ID=CGI_10019503; scaffold376 TRF Tandem_Repeat 289322 290010 837 + . . scaffold376 flankbed promoter 334653 335582 . - . ID=CGI_10019506; scaffold376 TRF Tandem_Repeat 334653 336247 2677 + . . scaffold376 flankbed promoter 487758 488266 . - . ID=CGI_10019515; scaffold376 TRF Tandem_Repeat 487758 488266 731 + . . scaffold376 flankbed promoter 487754 488266 . - . ID=CGI_10019515; scaffold376 TRF Tandem_Repeat 487754 488266 709 + . . scaffold376 flankbed promoter 536083 536133 . - . ID=CGI_10019517; scaffold376 TRF Tandem_Repeat 536083 536133 50 + . . scaffold376 flankbed promoter 536090 536133 . - . ID=CGI_10019517; scaffold376 TRF Tandem_Repeat 536090 536133 54 + . . scaffold376 flankbed promoter 553766 553816 . - . ID=CGI_10019519; scaffold376 TRF Tandem_Repeat 553766 553816 102 + . . scaffold376 flankbed promoter 580991 581584 . - . ID=CGI_10019521; scaffold376 WUBlastX LTR_Ngaro 580991 581968 492 - . . scaffold37662 flankbed promoter 44709 44906 . - . ID=CGI_10002444; scaffold37662 WUBlastX DNA_TcMar-Fot1 44709 44906 24 - . . scaffold37662 flankbed promoter 44902 45090 . - . ID=CGI_10002444; scaffold37662 WUBlastX DNA_TcMar-Fot1 44902 45090 188 - . . scaffold37662 flankbed promoter 45089 45273 . - . ID=CGI_10002444; scaffold37662 WUBlastX DNA_TcMar-Fot1 45089 45829 480 - . . scaffold37662 flankbed promoter 44839 45036 . - . ID=CGI_10002444; scaffold37662 WUBlastX DNA_TcMar-Fot1 44839 45036 37 - . . scaffold37664 flankbed promoter 283 359 . + . ID=CGI_10002437; scaffold37664 TRF Tandem_Repeat 283 359 120 + . . scaffold37664 flankbed promoter 22011 22047 . - . ID=CGI_10002439; scaffold37664 TRF Tandem_Repeat 22011 22047 74 + . . scaffold37664 flankbed promoter 22335 22376 . - . ID=CGI_10002439; scaffold37664 TRF Tandem_Repeat 22335 22376 84 + . . scaffold37664 flankbed promoter 35038 35107 . + . ID=CGI_10002441; scaffold37664 TRF Tandem_Repeat 35038 35107 68 + . . scaffold37664 flankbed promoter 35030 35107 . + . ID=CGI_10002441; scaffold37664 TRF Tandem_Repeat 35030 35107 84 + . . scaffold37664 flankbed promoter 35038 35107 . + . ID=CGI_10002441; scaffold37664 TRF Tandem_Repeat 35038 35107 68 + . . scaffold37668 flankbed promoter 39969 40125 . + . ID=CGI_10002448; scaffold37668 WUBlastX LINE_L1-Tx1 39772 40125 55 - . . scaffold37668 flankbed promoter 39969 40191 . + . ID=CGI_10002448; scaffold37668 WUBlastX LINE_L1-Tx1 39925 40191 67 - . . scaffold37672 flankbed promoter 4880 5236 . - . ID=CGI_10002461; scaffold37672 WUBlastX DNA_Crypton 4880 5458 61 - . . scaffold37672 flankbed promoter 32173 32382 . + . ID=CGI_10002462; scaffold37672 WUBlastX LINE_L1-Tx1 31933 32382 37 - . . scaffold37672 flankbed promoter 32173 32313 . + . ID=CGI_10002462; scaffold37672 WUBlastX LINE_L1-Tx1 31933 32313 62 - . . scaffold37680 flankbed promoter 9408 9680 . + . ID=CGI_10002455; scaffold37680 WUBlastX LINE_RTE-X 9408 9680 75 - . . scaffold37680 flankbed promoter 9276 9710 . + . ID=CGI_10002455; scaffold37680 WUBlastX LINE_RTE-X 9276 9710 52 - . . scaffold377 flankbed promoter 145183 145222 . - . ID=CGI_10019404; scaffold377 TRF Tandem_Repeat 145183 145222 64 + . . scaffold377 flankbed promoter 144954 145173 . - . ID=CGI_10019404; scaffold377 WUBlastX LINE_L1-Tx1 144775 145173 24 + . . scaffold37722 flankbed promoter 37628 37659 . - . ID=CGI_10002483; scaffold37722 TRF Tandem_Repeat 37628 37659 55 + . . scaffold37722 flankbed promoter 37766 37814 . - . ID=CGI_10002483; scaffold37722 TRF Tandem_Repeat 37766 37814 98 + . . scaffold37740 flankbed promoter 41528 41683 . - . ID=CGI_10002469; scaffold37740 WUBlastX DNA_Harbinger 41528 41806 126 + . . scaffold37740 flankbed promoter 44056 44517 . - . ID=CGI_10002470; scaffold37740 WUBlastX DNA_Crypton 44056 44646 74 - . . scaffold37772 flankbed promoter 28553 28630 . - . ID=CGI_10002493; scaffold37772 TRF Tandem_Repeat 28553 28630 122 + . . scaffold37772 flankbed promoter 28797 29480 . - . ID=CGI_10002493; scaffold37772 TRF Tandem_Repeat 28797 30485 2389 + . . scaffold37790 flankbed promoter 12512 12693 . - . ID=CGI_10002498; scaffold37790 WUBlastX DNA_TcMar-Tc1 12512 13195 205 + . . scaffold378 flankbed promoter 90883 90916 . - . ID=CGI_10017635; scaffold378 TRF Tandem_Repeat 90883 90916 68 + . . scaffold378 flankbed promoter 188187 188243 . - . ID=CGI_10017638; scaffold378 TRF Tandem_Repeat 188187 188243 55 + . . scaffold378 flankbed promoter 255856 255988 . + . ID=CGI_10017644; scaffold378 WUBlastX DNA_Maverick 255434 255988 348 - . . scaffold378 flankbed promoter 344684 345169 . + . ID=CGI_10017653; scaffold378 WUBlastX LTR_Gypsy 344684 345169 27 - . . scaffold378 flankbed promoter 344813 345169 . + . ID=CGI_10017653; scaffold378 WUBlastX LTR_Gypsy 344813 345169 58 - . . scaffold378 flankbed promoter 344975 345214 . + . ID=CGI_10017653; scaffold378 WUBlastX LTR_Gypsy 344975 345214 34 - . . scaffold378 flankbed promoter 381174 381243 . + . ID=CGI_10017656; scaffold378 TRF Tandem_Repeat 381144 381243 173 + . . scaffold37844 flankbed promoter 45906 45979 . - . ID=CGI_10002510; scaffold37844 TRF Tandem_Repeat 45906 45979 130 + . . scaffold37880 flankbed promoter 19063 19326 . + . ID=CGI_10002533; scaffold37880 WUBlastX DNA_Zator 19063 20724 783 + . . scaffold37880 flankbed promoter 25678 25812 . + . ID=CGI_10002534; scaffold37880 WUBlastX DNA_Harbinger 25678 26007 162 + . . scaffold37880 flankbed promoter 31648 31837 . - . ID=CGI_10002535; scaffold37880 WUBlastX DNA_Maverick 31648 32241 399 - . . scaffold37880 flankbed promoter 31648 32241 . - . ID=CGI_10002536; scaffold37880 WUBlastX DNA_Maverick 31648 32241 399 - . . scaffold37880 flankbed promoter 31648 32241 . - . ID=CGI_10002537; scaffold37880 WUBlastX DNA_Maverick 31648 32241 399 - . . scaffold37880 flankbed promoter 36940 37155 . + . ID=CGI_10002540; scaffold37880 WUBlastX LTR_ERVK 36940 37155 48 + . . scaffold37880 flankbed promoter 36836 36934 . + . ID=CGI_10002540; scaffold37880 WUBlastX LTR_Copia 36836 36934 46 + . . scaffold37880 flankbed promoter 36707 37048 . + . ID=CGI_10002540; scaffold37880 WUBlastX LTR_Copia 36707 37048 41 + . . scaffold37938 flankbed promoter 27653 27714 . - . ID=CGI_10002551; scaffold37938 TRF Tandem_Repeat 27653 27720 75 + . . scaffold37938 flankbed promoter 27672 27714 . - . ID=CGI_10002551; scaffold37938 TRF Tandem_Repeat 27672 27729 71 + . . scaffold37938 flankbed promoter 27653 27720 . - . ID=CGI_10002552; scaffold37938 TRF Tandem_Repeat 27653 27720 75 + . . scaffold37938 flankbed promoter 27672 27729 . - . ID=CGI_10002552; scaffold37938 TRF Tandem_Repeat 27672 27729 71 + . . scaffold37938 flankbed promoter 28286 28290 . - . ID=CGI_10002552; scaffold37938 TRF Tandem_Repeat 28286 28397 199 + . . scaffold37944 flankbed promoter 40636 40812 . - . ID=CGI_10002560; scaffold37944 WUBlastX LTR_Gypsy 40636 40812 58 - . . scaffold37944 flankbed promoter 40558 40869 . - . ID=CGI_10002560; scaffold37944 WUBlastX LTR_Gypsy 40558 40869 36 - . . scaffold38010 flankbed promoter 430 449 . + . ID=CGI_10002571; scaffold38010 TRF Tandem_Repeat 415 449 61 + . . scaffold38010 flankbed promoter 29543 29582 . - . ID=CGI_10002574; scaffold38010 TRF Tandem_Repeat 29543 29582 80 + . . scaffold38010 flankbed promoter 35501 35552 . - . ID=CGI_10002575; scaffold38010 WUBlastX LINE_Jockey 35501 36580 75 - . . scaffold38010 flankbed promoter 35072 35552 . - . ID=CGI_10002575; scaffold38010 WUBlastX LINE_RTE-X 35072 36268 480 - . . scaffold38010 flankbed promoter 34839 35072 . - . ID=CGI_10002575; scaffold38010 WUBlastX LINE_RTE-X 34839 35072 59 - . . scaffold38010 flankbed promoter 38558 38624 . - . ID=CGI_10002576; scaffold38010 TRF Tandem_Repeat 38558 38624 80 + . . scaffold38020 flankbed promoter 50562 50769 . - . ID=CGI_10002579; scaffold38020 TRF Tandem_Repeat 50394 50769 518 + . . scaffold38026 flankbed promoter 8221 8364 . - . ID=CGI_10002427; scaffold38026 WUBlastX LINE_RTE-X 8221 8598 138 + . . scaffold38026 flankbed promoter 8221 8364 . - . ID=CGI_10002427; scaffold38026 WUBlastX LINE_RTE-X 8221 8706 115 + . . scaffold38066 flankbed promoter 10926 11183 . - . ID=CGI_10002611; scaffold38066 WUBlastX DNA_hAT-Tip100 10926 11183 53 - . . scaffold38066 flankbed promoter 10929 11147 . - . ID=CGI_10002611; scaffold38066 WUBlastX DNA_hAT-Tip100 10929 11147 55 - . . scaffold38066 flankbed promoter 22087 22399 . + . ID=CGI_10002612; scaffold38066 WUBlastX LINE_L1-Tx1 22064 22399 20 + . . scaffold38066 flankbed promoter 22087 22297 . + . ID=CGI_10002612; scaffold38066 WUBlastX LINE_L1 22061 22297 63 + . . scaffold38066 flankbed promoter 22115 22342 . + . ID=CGI_10002612; scaffold38066 WUBlastX LINE_L1 22115 22342 27 + . . scaffold381 flankbed promoter 2029 2359 . + . ID=CGI_10017552; scaffold381 WUBlastX DNA_IS4EU 1994 2359 40 + . . scaffold381 flankbed promoter 427808 428069 . - . ID=CGI_10017565; scaffold381 TRF Tandem_Repeat 427808 428093 403 + . . scaffold381 flankbed promoter 427796 428069 . - . ID=CGI_10017565; scaffold381 TRF Tandem_Repeat 427796 428093 463 + . . scaffold38122 flankbed promoter 1703 1727 . + . ID=CGI_10002632; scaffold38122 TRF Tandem_Repeat 1703 1727 50 + . . scaffold38122 flankbed promoter 34230 34285 . + . ID=CGI_10002633; scaffold38122 TRF Tandem_Repeat 34230 34285 91 + . . scaffold38130 flankbed promoter 30993 31326 . - . ID=CGI_10002636; scaffold38130 WUBlastX DNA_Maverick 30993 32012 511 - . . scaffold38130 flankbed promoter 30942 31211 . - . ID=CGI_10002636; scaffold38130 WUBlastX DNA_Maverick 30942 31211 144 - . . scaffold38130 flankbed promoter 30851 30982 . - . ID=CGI_10002636; scaffold38130 WUBlastX DNA_Maverick 30851 30982 73 - . . scaffold38130 flankbed promoter 30401 30634 . - . ID=CGI_10002636; scaffold38130 WUBlastX DNA_Maverick 30401 30634 84 - . . scaffold38130 flankbed promoter 30665 30784 . - . ID=CGI_10002636; scaffold38130 WUBlastX DNA_Maverick 30665 30784 29 - . . scaffold38130 flankbed promoter 30407 30730 . - . ID=CGI_10002636; scaffold38130 WUBlastX DNA_Maverick 30407 30730 52 - . . scaffold38136 flankbed promoter 30084 30108 . + . ID=CGI_10002634; scaffold38136 TRF Tandem_Repeat 30084 30108 50 + . . scaffold38190 flankbed promoter 11753 11838 . - . ID=CGI_10002644; scaffold38190 TRF Tandem_Repeat 11753 11838 86 + . . scaffold38190 flankbed promoter 12091 12155 . - . ID=CGI_10002644; scaffold38190 TRF Tandem_Repeat 12091 12155 121 + . . scaffold38190 flankbed promoter 12341 12369 . - . ID=CGI_10002644; scaffold38190 TRF Tandem_Repeat 12341 12369 58 + . . scaffold38274 flankbed promoter 16082 16102 . + . ID=CGI_10002704; scaffold38274 WUBlastX LINE_L1 16082 16576 69 + . . scaffold383 flankbed promoter 177497 177559 . - . ID=CGI_10023523; scaffold383 TRF Tandem_Repeat 177497 177559 90 + . . scaffold383 flankbed promoter 197252 197318 . - . ID=CGI_10023525; scaffold383 TRF Tandem_Repeat 197252 197318 134 + . . scaffold383 flankbed promoter 252087 252125 . + . ID=CGI_10023530; scaffold383 TRF Tandem_Repeat 252087 252125 71 + . . scaffold383 flankbed promoter 293605 293946 . + . ID=CGI_10023533; scaffold383 WUBlastX DNA_TcMar-Marin 293605 293946 102 - . . scaffold383 flankbed promoter 554841 554886 . + . ID=CGI_10023547; scaffold383 TRF Tandem_Repeat 554841 554886 92 + . . scaffold383 flankbed promoter 741434 741882 . + . ID=CGI_10023553; scaffold383 WUBlastX LTR_Gypsy 741313 741882 109 - . . scaffold383 flankbed promoter 741434 741975 . + . ID=CGI_10023553; scaffold383 WUBlastX LTR_Gypsy 741136 741975 90 - . . scaffold383 flankbed promoter 741875 742381 . + . ID=CGI_10023553; scaffold383 WUBlastX LTR_Gypsy 741875 742381 110 - . . scaffold383 flankbed promoter 741818 742252 . + . ID=CGI_10023553; scaffold383 WUBlastX LTR_Gypsy 741818 742252 163 - . . scaffold383 flankbed promoter 741728 742252 . + . ID=CGI_10023553; scaffold383 WUBlastX LTR_Gypsy 741728 742252 134 - . . scaffold383 flankbed promoter 741434 741882 . + . ID=CGI_10023553; scaffold383 WUBlastX LTR_Gypsy 741403 741882 114 - . . scaffold383 flankbed promoter 741884 742267 . + . ID=CGI_10023553; scaffold383 WUBlastX LTR_Gypsy 741884 742267 176 - . . scaffold38302 flankbed promoter 53306 53354 . + . ID=CGI_10002722; scaffold38302 TRF Tandem_Repeat 53306 53354 98 + . . scaffold38370 flankbed promoter 6483 6533 . + . ID=CGI_10002738; scaffold38370 TRF Tandem_Repeat 6483 6533 66 + . . scaffold38370 flankbed promoter 38881 38961 . + . ID=CGI_10002741; scaffold38370 TRF Tandem_Repeat 38881 38961 153 + . . scaffold38372 flankbed promoter 43740 44105 . + . ID=CGI_10002751; scaffold38372 WUBlastX DNA_Crypton 43740 44105 32 + . . scaffold38374 flankbed promoter 8113 8301 . + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Ngaro 8113 8436 65 + . . scaffold38376 flankbed promoter 28276 28956 . - . ID=CGI_10002734; scaffold38376 TRF Tandem_Repeat 28276 29221 1287 + . . scaffold38376 flankbed promoter 33799 33936 . + . ID=CGI_10002735; scaffold38376 WUBlastX LTR_Gypsy-Cigr 33799 33936 26 + . . scaffold38382 flankbed promoter 20439 20487 . + . ID=CGI_10002755; scaffold38382 WUBlastX LINE_CR1 20419 20487 39 - . . scaffold38400 flankbed promoter 43773 44080 . - . ID=CGI_10002763; scaffold38400 TRF Tandem_Repeat 43773 44080 323 + . . scaffold38422 flankbed promoter 43374 43440 . - . ID=CGI_10002766; scaffold38422 TRF Tandem_Repeat 43374 43440 89 + . . scaffold38438 flankbed promoter 54302 54344 . - . ID=CGI_10002770; scaffold38438 TRF Tandem_Repeat 54302 54344 59 + . . scaffold38438 flankbed promoter 54297 54347 . - . ID=CGI_10002770; scaffold38438 TRF Tandem_Repeat 54297 54347 57 + . . scaffold38438 flankbed promoter 54236 54250 . - . ID=CGI_10002770; scaffold38438 WUBlastX DNA_TcMar-Marin 54107 54250 70 - . . scaffold38458 flankbed promoter 55758 56003 . + . ID=CGI_10002785; scaffold38458 WUBlastX LINE_L2 55758 56003 29 + . . scaffold38458 flankbed promoter 56006 56050 . + . ID=CGI_10002785; scaffold38458 WUBlastX LINE_CR1-L2 56006 56308 22 + . . scaffold38466 flankbed promoter 3161 3169 . + . ID=CGI_10002797; scaffold38466 WUBlastX DNA_Kolobok-Hyd 3161 3319 21 + . . scaffold38466 flankbed promoter 4015 4548 . + . ID=CGI_10002798; scaffold38466 WUBlastX DNA_Kolobok-Hyd 3880 4548 37 + . . scaffold38480 flankbed promoter 53206 53943 . - . ID=CGI_10002772; scaffold38480 WUBlastX LTR_Ngaro 52831 53943 204 - . . scaffold38492 flankbed promoter 52695 52701 . - . ID=CGI_10002801; scaffold38492 WUBlastX DNA_hAT-Tip100 52695 53024 56 - . . scaffold38492 flankbed promoter 52749 52983 . - . ID=CGI_10002802; scaffold38492 WUBlastX DNA_hAT-Tip100 52749 53153 228 - . . scaffold38492 flankbed promoter 52695 52983 . - . ID=CGI_10002802; scaffold38492 WUBlastX DNA_hAT-Tip100 52695 53024 56 - . . scaffold38492 flankbed promoter 52749 53153 . - . ID=CGI_10002803; scaffold38492 WUBlastX DNA_hAT-Tip100 52749 53153 228 - . . scaffold38492 flankbed promoter 52695 53024 . - . ID=CGI_10002803; scaffold38492 WUBlastX DNA_hAT-Tip100 52695 53024 56 - . . scaffold385 flankbed promoter 1137 1224 . + . ID=CGI_10011594; scaffold385 TRF Tandem_Repeat 1123 1224 118 + . . scaffold385 flankbed promoter 139356 139853 . - . ID=CGI_10011596; scaffold385 WUBlastX LINE_CR1 139356 139853 44 + . . scaffold385 flankbed promoter 139356 139943 . - . ID=CGI_10011596; scaffold385 WUBlastX LINE_CR1 139356 139943 21 + . . scaffold385 flankbed promoter 139559 139853 . + . ID=CGI_10011598; scaffold385 WUBlastX LINE_CR1 139356 139853 44 + . . scaffold385 flankbed promoter 139559 139943 . + . ID=CGI_10011598; scaffold385 WUBlastX LINE_CR1 139356 139943 21 + . . scaffold385 flankbed promoter 173352 173387 . - . ID=CGI_10011599; scaffold385 TRF Tandem_Repeat 173352 173387 72 + . . scaffold385 flankbed promoter 263114 263731 . + . ID=CGI_10011600; scaffold385 WUBlastX LTR_Gypsy 263114 263731 51 + . . scaffold385 flankbed promoter 263062 263614 . + . ID=CGI_10011600; scaffold385 WUBlastX LTR_Gypsy 263003 263614 58 + . . scaffold385 flankbed promoter 263504 263776 . + . ID=CGI_10011600; scaffold385 WUBlastX LTR_Copia 263504 263776 47 + . . scaffold385 flankbed promoter 263426 263875 . + . ID=CGI_10011600; scaffold385 WUBlastX LTR_Gypsy 263426 263875 25 + . . scaffold38546 flankbed promoter 35235 35271 . + . ID=CGI_10002835; scaffold38546 TRF Tandem_Repeat 35235 35271 65 + . . scaffold38552 flankbed promoter 7293 7393 . + . ID=CGI_10002837; scaffold38552 TRF Tandem_Repeat 7276 7393 130 + . . scaffold38552 flankbed promoter 7293 7393 . + . ID=CGI_10002837; scaffold38552 TRF Tandem_Repeat 7276 7393 130 + . . scaffold386 flankbed promoter 249659 249716 . + . ID=CGI_10012691; scaffold386 TRF Tandem_Repeat 249659 249716 116 + . . scaffold386 flankbed promoter 326958 327082 . - . ID=CGI_10012697; scaffold386 TRF Tandem_Repeat 326958 327082 94 + . . scaffold386 flankbed promoter 326971 327098 . - . ID=CGI_10012697; scaffold386 TRF Tandem_Repeat 326971 327098 73 + . . scaffold386 flankbed promoter 326949 327105 . - . ID=CGI_10012697; scaffold386 TRF Tandem_Repeat 326949 327105 280 + . . scaffold38678 flankbed promoter 1097 1261 . - . ID=CGI_10002904; scaffold38678 WUBlastX DNA_IS4EU 248 1261 364 - . . scaffold387 flankbed promoter 11856 11896 . - . ID=CGI_10004496; scaffold387 TRF Tandem_Repeat 11856 11896 82 + . . scaffold387 flankbed promoter 43758 44039 . - . ID=CGI_10004498; scaffold387 WUBlastX LTR_Gypsy 43758 44039 74 - . . scaffold38704 flankbed promoter 6847 6904 . + . ID=CGI_10002939; scaffold38704 TRF Tandem_Repeat 6847 6904 116 + . . scaffold38704 flankbed promoter 7237 7276 . + . ID=CGI_10002939; scaffold38704 TRF Tandem_Repeat 7237 7276 80 + . . scaffold38736 flankbed promoter 6349 6421 . - . ID=CGI_10002942; scaffold38736 TRF Tandem_Repeat 6349 6421 119 + . . scaffold38736 flankbed promoter 6346 6434 . - . ID=CGI_10002942; scaffold38736 TRF Tandem_Repeat 6346 6434 99 + . . scaffold38752 flankbed promoter 4918 4955 . + . ID=CGI_10002946; scaffold38752 TRF Tandem_Repeat 4918 4955 58 + . . scaffold38752 flankbed promoter 48426 48467 . + . ID=CGI_10002950; scaffold38752 TRF Tandem_Repeat 48426 48467 75 + . . scaffold388 flankbed promoter 198605 198655 . - . ID=CGI_10020463; scaffold388 TRF Tandem_Repeat 198605 198655 102 + . . scaffold388 flankbed promoter 198780 198814 . - . ID=CGI_10020463; scaffold388 TRF Tandem_Repeat 198780 198814 70 + . . scaffold388 flankbed promoter 212018 212078 . - . ID=CGI_10020464; scaffold388 TRF Tandem_Repeat 212018 212078 52 + . . scaffold388 flankbed promoter 221778 221834 . - . ID=CGI_10020466; scaffold388 TRF Tandem_Repeat 221778 221834 114 + . . scaffold388 flankbed promoter 410149 410183 . - . ID=CGI_10020474; scaffold388 TRF Tandem_Repeat 410149 410183 70 + . . scaffold388 flankbed promoter 630655 630714 . - . ID=CGI_10020484; scaffold388 TRF Tandem_Repeat 630655 630714 95 + . . scaffold38804 flankbed promoter 26216 26307 . - . ID=CGI_10002975; scaffold38804 TRF Tandem_Repeat 26216 26307 91 + . . scaffold38828 flankbed promoter 2746 2799 . - . ID=CGI_10002997; scaffold38828 TRF Tandem_Repeat 2746 2799 108 + . . scaffold38854 flankbed promoter 17582 17728 . - . ID=CGI_10003010; scaffold38854 WUBlastX LINE_L2 17582 17728 20 + . . scaffold38854 flankbed promoter 33280 33695 . - . ID=CGI_10003012; scaffold38854 WUBlastX LTR_Gypsy 33280 33936 382 + . . scaffold38854 flankbed promoter 33090 33296 . - . ID=CGI_10003012; scaffold38854 WUBlastX LTR_Gypsy 33090 33296 42 + . . scaffold38854 flankbed promoter 33024 33167 . - . ID=CGI_10003012; scaffold38854 WUBlastX LTR_Gypsy 33024 33167 30 + . . scaffold38854 flankbed promoter 33066 33233 . - . ID=CGI_10003012; scaffold38854 WUBlastX LTR_Gypsy 33066 33233 44 + . . scaffold38876 flankbed promoter 30001 30664 . + . ID=CGI_10003027; scaffold38876 WUBlastX LTR_Gypsy-Cigr 29870 30664 341 + . . scaffold38882 flankbed promoter 160 249 . + . ID=CGI_10003021; scaffold38882 TRF Tandem_Repeat 160 249 171 + . . scaffold38884 flankbed promoter 17691 17747 . + . ID=CGI_10003003; scaffold38884 TRF Tandem_Repeat 17679 17747 138 + . . scaffold38898 flankbed promoter 15301 15580 . + . ID=CGI_10003028; scaffold38898 TRF Tandem_Repeat 15292 15580 344 + . . scaffold38898 flankbed promoter 15301 15580 . + . ID=CGI_10003028; scaffold38898 TRF Tandem_Repeat 15292 15580 359 + . . scaffold38898 flankbed promoter 15301 15582 . + . ID=CGI_10003028; scaffold38898 TRF Tandem_Repeat 15293 15582 451 + . . scaffold38898 flankbed promoter 15724 15760 . + . ID=CGI_10003028; scaffold38898 TRF Tandem_Repeat 15724 15760 65 + . . scaffold38900 flankbed promoter 21772 21777 . - . ID=CGI_10003039; scaffold38900 WUBlastX DNA_Harbinger 21619 21777 66 - . . scaffold38912 flankbed promoter 37098 37122 . + . ID=CGI_10003034; scaffold38912 TRF Tandem_Repeat 37098 37122 50 + . . scaffold38944 flankbed promoter 21742 22404 . + . ID=CGI_10003070; scaffold38944 WUBlastX LTR_Gypsy 21742 22404 470 + . . scaffold38944 flankbed promoter 21742 22467 . + . ID=CGI_10003070; scaffold38944 WUBlastX LTR_Gypsy 21742 22614 45 + . . scaffold38974 flankbed promoter 18620 18622 . + . ID=CGI_10003119; scaffold38974 WUBlastX DNA_Kolobok 18620 18769 52 + . . scaffold38974 flankbed promoter 18394 18450 . + . ID=CGI_10003119; scaffold38974 WUBlastX DNA_Kolobok 18394 18450 43 + . . scaffold38978 flankbed promoter 2 355 . + . ID=CGI_10003126; scaffold38978 WUBlastX LTR_Gypsy 2 355 86 + . . scaffold38978 flankbed promoter 8522 8863 . - . ID=CGI_10003127; scaffold38978 WUBlastX DNA_Harbinger 8441 8863 77 - . . scaffold38978 flankbed promoter 8522 8779 . - . ID=CGI_10003127; scaffold38978 WUBlastX DNA_Harbinger 8435 8779 164 - . . scaffold38978 flankbed promoter 27816 28001 . - . ID=CGI_10003128; scaffold38978 WUBlastX RC_Helitron 27816 28001 68 + . . scaffold38978 flankbed promoter 27702 27809 . - . ID=CGI_10003128; scaffold38978 WUBlastX DNA_Sola 27702 27809 79 - . . scaffold39014 flankbed promoter 10314 10475 . + . ID=CGI_10003135; scaffold39014 WUBlastX LINE_L1 10314 10778 79 + . . scaffold39074 flankbed promoter 21561 21586 . - . ID=CGI_10003131; scaffold39074 TRF Tandem_Repeat 21561 21610 86 + . . scaffold39078 flankbed promoter 15165 15203 . + . ID=CGI_10003180; scaffold39078 TRF Tandem_Repeat 15165 15203 78 + . . scaffold39096 flankbed promoter 49766 49801 . + . ID=CGI_10003149; scaffold39096 TRF Tandem_Repeat 49766 49801 58 + . . scaffold39120 flankbed promoter 50512 50565 . + . ID=CGI_10003189; scaffold39120 TRF Tandem_Repeat 50512 50565 55 + . . scaffold39126 flankbed promoter 3536 3694 . + . ID=CGI_10003195; scaffold39126 WUBlastX DNA_TcMar-Marin 3536 3694 40 - . . scaffold39126 flankbed promoter 3593 3694 . + . ID=CGI_10003195; scaffold39126 WUBlastX DNA_TcMar-Marin 3593 3694 65 - . . scaffold39126 flankbed promoter 3575 3700 . + . ID=CGI_10003195; scaffold39126 WUBlastX DNA_TcMar-Marin 3575 3700 49 - . . scaffold39158 flankbed promoter 43457 43530 . - . ID=CGI_10003200; scaffold39158 TRF Tandem_Repeat 43457 43530 139 + . . scaffold39158 flankbed promoter 43530 43559 . - . ID=CGI_10003200; scaffold39158 TRF Tandem_Repeat 43530 43559 60 + . . scaffold39174 flankbed promoter 60735 60762 . + . ID=CGI_10003257; scaffold39174 TRF Tandem_Repeat 60735 60762 56 + . . scaffold39196 flankbed promoter 60024 60404 . - . ID=CGI_10003215; scaffold39196 WUBlastX DNA_Maverick 60024 60404 215 + . . scaffold39196 flankbed promoter 25443 25796 . + . ID=CGI_10003217; scaffold39196 WUBlastX LTR_Gypsy 24003 25796 1285 + . . scaffold39196 flankbed promoter 25931 25993 . + . ID=CGI_10003217; scaffold39196 WUBlastX LTR_ERVK 25931 25993 22 + . . scaffold39196 flankbed promoter 38677 38824 . + . ID=CGI_10003218; scaffold39196 WUBlastX RC_Helitron 38396 38824 45 - . . scaffold39196 flankbed promoter 38815 39003 . + . ID=CGI_10003218; scaffold39196 WUBlastX RC_Helitron 38815 39003 69 - . . scaffold392 flankbed promoter 90144 90902 . - . ID=CGI_10024203; scaffold392 WUBlastX LTR_Copia 90144 90902 96 - . . scaffold392 flankbed promoter 90462 90919 . - . ID=CGI_10024203; scaffold392 WUBlastX LTR_ERV1 90462 91298 159 - . . scaffold392 flankbed promoter 90261 90919 . - . ID=CGI_10024203; scaffold392 WUBlastX DNA_Maverick 90261 90971 142 - . . scaffold392 flankbed promoter 90498 90919 . - . ID=CGI_10024203; scaffold392 WUBlastX LTR_Gypsy 90498 91556 98 - . . scaffold392 flankbed promoter 90510 90919 . - . ID=CGI_10024203; scaffold392 WUBlastX DNA_Maverick 90510 91046 180 - . . scaffold392 flankbed promoter 418299 418331 . + . ID=CGI_10024216; scaffold392 TRF Tandem_Repeat 418299 418331 52 + . . scaffold392 flankbed promoter 424183 424353 . + . ID=CGI_10024217; scaffold392 WUBlastX LINE_L2 424183 424353 92 - . . scaffold392 flankbed promoter 581409 581475 . - . ID=CGI_10024224; scaffold392 TRF Tandem_Repeat 581409 581475 134 + . . scaffold392 flankbed promoter 652631 652667 . + . ID=CGI_10024228; scaffold392 TRF Tandem_Repeat 652631 652667 67 + . . scaffold392 flankbed promoter 688042 688291 . - . ID=CGI_10024229; scaffold392 TRF Tandem_Repeat 688042 688291 108 + . . scaffold39202 flankbed promoter 53690 53836 . + . ID=CGI_10003213; scaffold39202 TRF Tandem_Repeat 53690 53836 73 + . . scaffold39202 flankbed promoter 53752 53900 . + . ID=CGI_10003213; scaffold39202 TRF Tandem_Repeat 53752 53900 97 + . . scaffold39214 flankbed promoter 29734 30733 . - . ID=CGI_10003232; scaffold39214 WUBlastX DNA_Academ 28747 30750 925 - . . scaffold39222 flankbed promoter 65214 65277 . - . ID=CGI_10003226; scaffold39222 TRF Tandem_Repeat 65214 65277 74 + . . scaffold39258 flankbed promoter 17221 17380 . + . ID=CGI_10003262; scaffold39258 TRF Tandem_Repeat 17221 17403 170 + . . scaffold39258 flankbed promoter 24668 24695 . - . ID=CGI_10003263; scaffold39258 TRF Tandem_Repeat 24668 24699 64 + . . scaffold39258 flankbed promoter 36662 36720 . - . ID=CGI_10003264; scaffold39258 TRF Tandem_Repeat 36662 36720 82 + . . scaffold39258 flankbed promoter 45870 45935 . + . ID=CGI_10003266; scaffold39258 TRF Tandem_Repeat 45870 45935 132 + . . scaffold39268 flankbed promoter 59567 59849 . - . ID=CGI_10003275; scaffold39268 WUBlastX LINE_L1-Tx1 59567 60874 209 - . . scaffold39268 flankbed promoter 59312 59849 . - . ID=CGI_10003275; scaffold39268 WUBlastX LINE_L1-Tx1 59312 60874 137 - . . scaffold39268 flankbed promoter 60831 60955 . + . ID=CGI_10003276; scaffold39268 WUBlastX LINE_L1-Tx1 60428 60955 105 - . . scaffold39268 flankbed promoter 60831 60874 . + . ID=CGI_10003276; scaffold39268 WUBlastX LINE_L1-Tx1 59567 60874 209 - . . scaffold39268 flankbed promoter 60831 60874 . + . ID=CGI_10003276; scaffold39268 WUBlastX LINE_L1-Tx1 59312 60874 137 - . . scaffold393 flankbed promoter 108397 108450 . - . ID=CGI_10026870; scaffold393 TRF Tandem_Repeat 108397 108450 108 + . . scaffold393 flankbed promoter 108735 108766 . - . ID=CGI_10026870; scaffold393 TRF Tandem_Repeat 108735 108778 88 + . . scaffold393 flankbed promoter 421428 421622 . - . ID=CGI_10026888; scaffold393 TRF Tandem_Repeat 421428 422334 1331 + . . scaffold393 flankbed promoter 433620 433663 . - . ID=CGI_10026890; scaffold393 TRF Tandem_Repeat 433620 433663 88 + . . scaffold393 flankbed promoter 433620 433663 . + . ID=CGI_10026891; scaffold393 TRF Tandem_Repeat 433620 433663 88 + . . scaffold393 flankbed promoter 497092 497137 . - . ID=CGI_10026895; scaffold393 TRF Tandem_Repeat 497092 497137 51 + . . scaffold393 flankbed promoter 900517 900575 . - . ID=CGI_10026915; scaffold393 TRF Tandem_Repeat 900517 900575 57 + . . scaffold393 flankbed promoter 900517 900569 . - . ID=CGI_10026915; scaffold393 TRF Tandem_Repeat 900517 900569 65 + . . scaffold393 flankbed promoter 900678 900718 . - . ID=CGI_10026915; scaffold393 TRF Tandem_Repeat 900678 900718 82 + . . scaffold393 flankbed promoter 1132962 1133171 . - . ID=CGI_10026926; scaffold393 TRF Tandem_Repeat 1132962 1133171 384 + . . scaffold39334 flankbed promoter 9203 9252 . - . ID=CGI_10003302; scaffold39334 TRF Tandem_Repeat 9203 9252 73 + . . scaffold39368 flankbed promoter 25988 26038 . - . ID=CGI_10003309; scaffold39368 TRF Tandem_Repeat 25988 26038 102 + . . scaffold394 flankbed promoter 4593 4650 . + . ID=CGI_10022057; scaffold394 TRF Tandem_Repeat 4593 4650 116 + . . scaffold394 flankbed promoter 283190 283533 . - . ID=CGI_10022076; scaffold394 TRF Tandem_Repeat 283190 283533 172 + . . scaffold394 flankbed promoter 285632 285863 . + . ID=CGI_10022077; scaffold394 TRF Tandem_Repeat 285520 285863 215 + . . scaffold394 flankbed promoter 434520 434708 . + . ID=CGI_10022085; scaffold394 WUBlastX LINE_L1-Tx1 433104 434708 52 - . . scaffold394 flankbed promoter 539449 539530 . - . ID=CGI_10022090; scaffold394 TRF Tandem_Repeat 539449 539824 479 + . . scaffold394 flankbed promoter 539449 539530 . - . ID=CGI_10022090; scaffold394 TRF Tandem_Repeat 539449 540381 796 + . . scaffold394 flankbed promoter 629458 629497 . + . ID=CGI_10022098; scaffold394 TRF Tandem_Repeat 629458 629497 71 + . . scaffold394 flankbed promoter 644822 644915 . + . ID=CGI_10022100; scaffold394 TRF Tandem_Repeat 644822 644915 125 + . . scaffold394 flankbed promoter 644962 645050 . + . ID=CGI_10022100; scaffold394 TRF Tandem_Repeat 644962 645050 128 + . . scaffold394 flankbed promoter 647366 647415 . + . ID=CGI_10022101; scaffold394 TRF Tandem_Repeat 647366 647415 100 + . . scaffold39412 flankbed promoter 47313 47347 . - . ID=CGI_10003319; scaffold39412 TRF Tandem_Repeat 47313 47347 70 + . . scaffold39412 flankbed promoter 47669 47725 . - . ID=CGI_10003319; scaffold39412 TRF Tandem_Repeat 47669 47725 105 + . . scaffold39424 flankbed promoter 53627 53961 . + . ID=CGI_10003364; scaffold39424 TRF Tandem_Repeat 53627 53961 582 + . . scaffold39476 flankbed promoter 48505 48735 . + . ID=CGI_10002876; scaffold39476 WUBlastX LTR_DIRS 48289 48735 146 + . . scaffold39476 flankbed promoter 48672 49208 . + . ID=CGI_10002876; scaffold39476 WUBlastX LTR_DIRS 48672 49208 229 + . . scaffold395 flankbed promoter 43817 43850 . - . ID=CGI_10013967; scaffold395 TRF Tandem_Repeat 43817 43850 68 + . . scaffold395 flankbed promoter 84082 84346 . + . ID=CGI_10013969; scaffold395 TRF Tandem_Repeat 83856 84346 727 + . . scaffold395 flankbed promoter 84905 85006 . + . ID=CGI_10013969; scaffold395 TRF Tandem_Repeat 84905 85006 82 + . . scaffold395 flankbed promoter 84905 85039 . + . ID=CGI_10013969; scaffold395 TRF Tandem_Repeat 84905 85039 72 + . . scaffold395 flankbed promoter 144190 144324 . + . ID=CGI_10013973; scaffold395 TRF Tandem_Repeat 144190 144324 98 + . . scaffold395 flankbed promoter 144208 144338 . + . ID=CGI_10013973; scaffold395 TRF Tandem_Repeat 144208 144338 112 + . . scaffold39500 flankbed promoter 18354 18935 . - . ID=CGI_10003411; scaffold39500 WUBlastX LTR_Gypsy 18354 18935 266 - . . scaffold39500 flankbed promoter 18919 19057 . - . ID=CGI_10003411; scaffold39500 WUBlastX LTR_Gypsy 18919 19503 377 - . . scaffold39500 flankbed promoter 18072 18914 . - . ID=CGI_10003411; scaffold39500 WUBlastX LTR_Gypsy 18072 18914 208 - . . scaffold39500 flankbed promoter 18231 18971 . - . ID=CGI_10003411; scaffold39500 WUBlastX LTR_Gypsy 18231 18971 236 - . . scaffold39500 flankbed promoter 18832 19057 . - . ID=CGI_10003411; scaffold39500 WUBlastX LTR_Gypsy 18832 19524 273 - . . scaffold39536 flankbed promoter 31267 31373 . - . ID=CGI_10003409; scaffold39536 TRF Tandem_Repeat 31267 31373 196 + . . scaffold39536 flankbed promoter 31409 31448 . - . ID=CGI_10003409; scaffold39536 TRF Tandem_Repeat 31409 31448 80 + . . scaffold39572 flankbed promoter 40740 40859 . - . ID=CGI_10003444; scaffold39572 TRF Tandem_Repeat 40740 40859 240 + . . scaffold39572 flankbed promoter 69115 69156 . - . ID=CGI_10003446; scaffold39572 TRF Tandem_Repeat 69115 69156 84 + . . scaffold39572 flankbed promoter 69571 69609 . - . ID=CGI_10003446; scaffold39572 TRF Tandem_Repeat 69571 69609 78 + . . scaffold39572 flankbed promoter 69769 69809 . - . ID=CGI_10003446; scaffold39572 TRF Tandem_Repeat 69769 69817 98 + . . scaffold39580 flankbed promoter 20070 20159 . - . ID=CGI_10003415; scaffold39580 TRF Tandem_Repeat 20070 20159 112 + . . scaffold39594 flankbed promoter 1583 1887 . + . ID=CGI_10003449; scaffold39594 TRF Tandem_Repeat 1583 1887 290 + . . scaffold396 flankbed promoter 133286 133483 . + . ID=CGI_10018098; scaffold396 WUBlastX DNA_Academ 133286 133483 87 + . . scaffold396 flankbed promoter 132558 132627 . + . ID=CGI_10018098; scaffold396 WUBlastX DNA_Academ 132232 132627 147 + . . scaffold396 flankbed promoter 132678 133316 . + . ID=CGI_10018098; scaffold396 WUBlastX DNA_Academ 132678 133316 229 + . . scaffold396 flankbed promoter 133483 133557 . + . ID=CGI_10018098; scaffold396 WUBlastX DNA_Academ 133483 134151 184 + . . scaffold396 flankbed promoter 135414 135632 . + . ID=CGI_10018099; scaffold396 WUBlastX LINE_RTE-X 135414 135632 81 - . . scaffold396 flankbed promoter 135498 135632 . + . ID=CGI_10018099; scaffold396 WUBlastX LINE_RTE-X 135498 135632 85 - . . scaffold396 flankbed promoter 135268 135468 . + . ID=CGI_10018099; scaffold396 WUBlastX LINE_RTE-X 135268 135468 53 - . . scaffold396 flankbed promoter 135122 135274 . + . ID=CGI_10018099; scaffold396 WUBlastX LINE_RTE-X 135122 135274 118 - . . scaffold396 flankbed promoter 209342 209805 . - . ID=CGI_10018103; scaffold396 WUBlastX LTR_Gypsy-Cigr 209342 209974 345 - . . scaffold396 flankbed promoter 275023 275533 . + . ID=CGI_10018110; scaffold396 TRF Tandem_Repeat 275023 275533 905 + . . scaffold396 flankbed promoter 347954 348475 . + . ID=CGI_10018113; scaffold396 WUBlastX LTR_Gypsy 347876 348475 164 + . . scaffold396 flankbed promoter 348182 348469 . + . ID=CGI_10018113; scaffold396 WUBlastX LTR_Gypsy-Cigr 348182 348469 241 + . . scaffold396 flankbed promoter 348537 348602 . + . ID=CGI_10018113; scaffold396 WUBlastX LTR_Gypsy 348537 348602 22 + . . scaffold396 flankbed promoter 347954 348475 . + . ID=CGI_10018113; scaffold396 WUBlastX LTR_Gypsy 347756 348475 84 + . . scaffold396 flankbed promoter 348131 348448 . + . ID=CGI_10018113; scaffold396 WUBlastX LTR_Gypsy 348131 348448 211 + . . scaffold396 flankbed promoter 524184 524294 . + . ID=CGI_10018129; scaffold396 TRF Tandem_Repeat 524184 524294 138 + . . scaffold39600 flankbed promoter 70451 70494 . - . ID=CGI_10003465; scaffold39600 TRF Tandem_Repeat 70451 70494 88 + . . scaffold39640 flankbed promoter 48294 48683 . + . ID=CGI_10003500; scaffold39640 WUBlastX DNA_IS4EU 48294 48683 133 + . . scaffold39642 flankbed promoter 458 499 . + . ID=CGI_10003493; scaffold39642 TRF Tandem_Repeat 458 499 84 + . . scaffold39642 flankbed promoter 2602 2757 . + . ID=CGI_10003494; scaffold39642 WUBlastX DNA_Maverick 2572 2757 123 + . . scaffold39642 flankbed promoter 3354 3536 . + . ID=CGI_10003494; scaffold39642 WUBlastX DNA_Maverick 3354 3536 24 + . . scaffold39642 flankbed promoter 11930 12140 . + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 11616 12140 177 - . . scaffold39642 flankbed promoter 12732 12929 . + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 12732 13112 64 - . . scaffold39642 flankbed promoter 11930 12737 . + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 11850 12737 406 - . . scaffold397 flankbed promoter 28175 28201 . + . ID=CGI_10003359; scaffold397 TRF Tandem_Repeat 28175 28201 54 + . . scaffold39712 flankbed promoter 40939 41122 . - . ID=CGI_10003594; scaffold39712 TRF Tandem_Repeat 40939 41122 314 + . . scaffold39724 flankbed promoter 36867 36911 . + . ID=CGI_10003579; scaffold39724 TRF Tandem_Repeat 36867 36911 83 + . . scaffold39744 flankbed promoter 30487 30587 . + . ID=CGI_10003603; scaffold39744 WUBlastX LINE_L1-Tx1 30219 30587 126 + . . scaffold39754 flankbed promoter 65898 65933 . - . ID=CGI_10003599; scaffold39754 TRF Tandem_Repeat 65898 65933 72 + . . scaffold39758 flankbed promoter 20995 21174 . + . ID=CGI_10003537; scaffold39758 WUBlastX DNA_P 20884 21174 118 + . . scaffold39778 flankbed promoter 9649 9694 . - . ID=CGI_10003606; scaffold39778 TRF Tandem_Repeat 9649 9694 92 + . . scaffold39778 flankbed promoter 33708 33744 . + . ID=CGI_10003608; scaffold39778 TRF Tandem_Repeat 33708 33744 65 + . . scaffold398 flankbed promoter 35758 35805 . + . ID=CGI_10004361; scaffold398 TRF Tandem_Repeat 35758 35805 96 + . . scaffold398 flankbed promoter 97132 97375 . - . ID=CGI_10004364; scaffold398 TRF Tandem_Repeat 97132 97375 470 + . . scaffold39804 flankbed promoter 15080 15382 . + . ID=CGI_10003618; scaffold39804 WUBlastX LINE_RTE-BovB 15080 15382 56 - . . scaffold39804 flankbed promoter 15366 15668 . + . ID=CGI_10003618; scaffold39804 WUBlastX LINE_RTE-BovB 15366 15668 55 - . . scaffold39804 flankbed promoter 56508 56574 . - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_L1 56508 56945 32 - . . scaffold39858 flankbed promoter 11367 11480 . - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 11319 11480 102 - . . scaffold39858 flankbed promoter 11367 11447 . - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 11319 11447 104 - . . scaffold39858 flankbed promoter 11578 12072 . - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 11578 12072 72 - . . scaffold399 flankbed promoter 196071 196117 . + . ID=CGI_10009288; scaffold399 TRF Tandem_Repeat 196071 196117 76 + . . scaffold399 flankbed promoter 196391 196449 . + . ID=CGI_10009288; scaffold399 TRF Tandem_Repeat 196391 196449 118 + . . scaffold39900 flankbed promoter 49346 49388 . + . ID=CGI_10003679; scaffold39900 WUBlastX LTR_Gypsy 49212 49388 31 + . . scaffold39900 flankbed promoter 53768 54031 . + . ID=CGI_10003681; scaffold39900 WUBlastX LTR_ERV1 53768 54031 24 - . . scaffold39900 flankbed promoter 57308 57910 . + . ID=CGI_10003683; scaffold39900 WUBlastX DNA_Maverick 57308 57910 375 + . . scaffold39900 flankbed promoter 63104 63421 . + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 63104 63421 108 + . . scaffold39900 flankbed promoter 63146 63412 . + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 63146 63412 140 + . . scaffold39900 flankbed promoter 63029 63412 . + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 63029 63412 92 + . . scaffold39960 flankbed promoter 21391 22003 . - . ID=CGI_10003754; scaffold39960 WUBlastX LTR_Gypsy 21391 24711 1780 - . . scaffold39960 flankbed promoter 21349 22003 . - . ID=CGI_10003754; scaffold39960 WUBlastX LTR_Gypsy-Cigr 21349 24171 1951 - . . scaffold39960 flankbed promoter 21097 22003 . - . ID=CGI_10003754; scaffold39960 WUBlastX LTR_Gypsy 21097 22677 473 - . . scaffold39960 flankbed promoter 49958 50530 . - . ID=CGI_10003757; scaffold39960 WUBlastX LTR_Gypsy-Cigr 49958 50530 106 - . . scaffold39960 flankbed promoter 49820 50542 . - . ID=CGI_10003757; scaffold39960 WUBlastX LTR_Gypsy 49820 50542 34 - . . scaffold39960 flankbed promoter 50219 50746 . - . ID=CGI_10003757; scaffold39960 WUBlastX LTR_Gypsy 50219 50746 74 - . . scaffold39960 flankbed promoter 50072 50545 . - . ID=CGI_10003757; scaffold39960 WUBlastX LTR_Gypsy-Cigr 50072 50545 134 - . . scaffold39974 flankbed promoter 66732 67329 . + . ID=CGI_10003760; scaffold39974 WUBlastX LTR_Ngaro 66325 67329 478 + . . scaffold39974 flankbed promoter 67579 67731 . + . ID=CGI_10003760; scaffold39974 WUBlastX LINE_RTE-X 67579 67989 49 + . . scaffold4 flankbed promoter 338340 338447 . + . ID=CGI_10021173; scaffold4 TRF Tandem_Repeat 338296 338447 126 + . . scaffold4 flankbed promoter 338524 338614 . + . ID=CGI_10021173; scaffold4 TRF Tandem_Repeat 338524 338614 101 + . . scaffold4 flankbed promoter 338524 338625 . + . ID=CGI_10021173; scaffold4 TRF Tandem_Repeat 338524 338625 100 + . . scaffold4 flankbed promoter 343449 343573 . + . ID=CGI_10021174; scaffold4 TRF Tandem_Repeat 343449 343573 92 + . . scaffold4 flankbed promoter 394254 394313 . - . ID=CGI_10021177; scaffold4 TRF Tandem_Repeat 394254 394313 120 + . . scaffold4 flankbed promoter 535710 536171 . + . ID=CGI_10021182; scaffold4 WUBlastX LINE_Jockey 535710 536219 21 + . . scaffold4 flankbed promoter 535338 536099 . + . ID=CGI_10021182; scaffold4 WUBlastX LINE_CR1 535338 536099 160 + . . scaffold40 flankbed promoter 66612 66660 . - . ID=CGI_10015099; scaffold40 TRF Tandem_Repeat 66612 66660 82 + . . scaffold40 flankbed promoter 258453 258460 . - . ID=CGI_10015106; scaffold40 WUBlastX DNA_Academ 258453 258503 23 - . . scaffold40 flankbed promoter 257461 258352 . - . ID=CGI_10015106; scaffold40 WUBlastX DNA_Academ 257378 258352 348 - . . scaffold400 flankbed promoter 20320 20444 . - . ID=CGI_10011429; scaffold400 TRF Tandem_Repeat 20320 20444 216 + . . scaffold400 flankbed promoter 41270 41311 . - . ID=CGI_10011430; scaffold400 TRF Tandem_Repeat 41270 41311 84 + . . scaffold400 flankbed promoter 95412 95452 . - . ID=CGI_10011433; scaffold400 TRF Tandem_Repeat 95412 95452 82 + . . scaffold40016 flankbed promoter 15519 15702 . - . ID=CGI_10003734; scaffold40016 TRF Tandem_Repeat 15519 15702 323 + . . scaffold40016 flankbed promoter 65788 65816 . - . ID=CGI_10003737; scaffold40016 TRF Tandem_Repeat 65788 65816 58 + . . scaffold40016 flankbed promoter 65814 65850 . - . ID=CGI_10003737; scaffold40016 TRF Tandem_Repeat 65814 65850 74 + . . scaffold40016 flankbed promoter 66202 66257 . - . ID=CGI_10003737; scaffold40016 TRF Tandem_Repeat 66202 66715 441 + . . scaffold40016 flankbed promoter 66202 66257 . - . ID=CGI_10003737; scaffold40016 TRF Tandem_Repeat 66202 66716 500 + . . scaffold40016 flankbed promoter 66202 66257 . - . ID=CGI_10003737; scaffold40016 TRF Tandem_Repeat 66202 66716 502 + . . scaffold40054 flankbed promoter 65737 66063 . - . ID=CGI_10003811; scaffold40054 WUBlastX LTR_Ngaro 65737 66063 62 + . . scaffold40054 flankbed promoter 65708 65803 . - . ID=CGI_10003811; scaffold40054 WUBlastX LTR_Ngaro 65708 65803 28 + . . scaffold40054 flankbed promoter 65815 66063 . - . ID=CGI_10003811; scaffold40054 WUBlastX LTR_Ngaro 65815 66063 134 + . . scaffold40072 flankbed promoter 16981 17018 . - . ID=CGI_10003797; scaffold40072 TRF Tandem_Repeat 16981 17018 67 + . . scaffold40072 flankbed promoter 64139 64215 . + . ID=CGI_10003802; scaffold40072 TRF Tandem_Repeat 64139 64215 65 + . . scaffold40076 flankbed promoter 81119 82033 . + . ID=CGI_10003791; scaffold40076 WUBlastX LTR_Ngaro 81071 82033 337 + . . scaffold40080 flankbed promoter 72855 72991 . - . ID=CGI_10003845; scaffold40080 TRF Tandem_Repeat 72855 73023 74 + . . scaffold40088 flankbed promoter 16474 16540 . - . ID=CGI_10003847; scaffold40088 TRF Tandem_Repeat 16474 16540 134 + . . scaffold40088 flankbed promoter 43013 43015 . + . ID=CGI_10003848; scaffold40088 TRF Tandem_Repeat 42960 43015 103 + . . scaffold40094 flankbed promoter 57558 57602 . + . ID=CGI_10003842; scaffold40094 TRF Tandem_Repeat 57558 57602 90 + . . scaffold401 flankbed promoter 120247 120792 . + . ID=CGI_10006991; scaffold401 WUBlastX LTR_Gypsy 120247 120792 284 + . . scaffold401 flankbed promoter 120247 120921 . + . ID=CGI_10006991; scaffold401 WUBlastX LTR_Gypsy 120247 120921 142 + . . scaffold40100 flankbed promoter 37957 38016 . + . ID=CGI_10003869; scaffold40100 TRF Tandem_Repeat 37957 38016 120 + . . scaffold40100 flankbed promoter 81922 81956 . + . ID=CGI_10003872; scaffold40100 TRF Tandem_Repeat 81922 81956 63 + . . scaffold40106 flankbed promoter 17931 17958 . + . ID=CGI_10003853; scaffold40106 TRF Tandem_Repeat 17931 17958 56 + . . scaffold40114 flankbed promoter 2926 3012 . + . ID=CGI_10003917; scaffold40114 TRF Tandem_Repeat 2926 3012 93 + . . scaffold40114 flankbed promoter 2960 3202 . + . ID=CGI_10003917; scaffold40114 TRF Tandem_Repeat 2960 3202 133 + . . scaffold40154 flankbed promoter 32633 33076 . - . ID=CGI_10003875; scaffold40154 WUBlastX LTR_DIRS 32633 33076 73 - . . scaffold40182 flankbed promoter 3953 4000 . - . ID=CGI_10003935; scaffold40182 TRF Tandem_Repeat 3953 4000 96 + . . scaffold40186 flankbed promoter 13210 13362 . - . ID=CGI_10003926; scaffold40186 WUBlastX LINE_RTE-X 13210 13602 29 - . . scaffold40186 flankbed promoter 13285 13362 . - . ID=CGI_10003926; scaffold40186 WUBlastX LINE_RTE-X 13285 13602 69 - . . scaffold40186 flankbed promoter 60209 60267 . + . ID=CGI_10003928; scaffold40186 TRF Tandem_Repeat 60209 60267 118 + . . scaffold402 flankbed promoter 222821 222857 . + . ID=CGI_10019322; scaffold402 TRF Tandem_Repeat 222821 222857 74 + . . scaffold402 flankbed promoter 339542 339935 . + . ID=CGI_10019325; scaffold402 TRF Tandem_Repeat 339542 339935 437 + . . scaffold402 flankbed promoter 339556 339935 . + . ID=CGI_10019325; scaffold402 TRF Tandem_Repeat 339556 339935 530 + . . scaffold402 flankbed promoter 574597 574615 . + . ID=CGI_10019335; scaffold402 TRF Tandem_Repeat 573369 574615 1444 + . . scaffold40246 flankbed promoter 27382 27412 . - . ID=CGI_10003986; scaffold40246 TRF Tandem_Repeat 27382 27412 53 + . . scaffold40246 flankbed promoter 27046 27165 . - . ID=CGI_10003986; scaffold40246 WUBlastX DNA_hAT-Tip100 26956 27165 81 - . . scaffold40246 flankbed promoter 27091 27330 . - . ID=CGI_10003986; scaffold40246 WUBlastX DNA_hAT-Tip100 27091 27330 38 - . . scaffold40246 flankbed promoter 77699 77739 . + . ID=CGI_10003992; scaffold40246 TRF Tandem_Repeat 77699 77739 82 + . . scaffold40254 flankbed promoter 11496 11552 . - . ID=CGI_10004003; scaffold40254 TRF Tandem_Repeat 11496 11552 114 + . . scaffold40346 flankbed promoter 54879 55311 . - . ID=CGI_10004042; scaffold40346 TRF Tandem_Repeat 54879 55664 989 + . . scaffold40388 flankbed promoter 44105 44166 . + . ID=CGI_10004077; scaffold40388 TRF Tandem_Repeat 44105 44166 124 + . . scaffold40396 flankbed promoter 28428 28552 . - . ID=CGI_10004066; scaffold40396 TRF Tandem_Repeat 28428 28552 114 + . . scaffold404 flankbed promoter 335877 336048 . - . ID=CGI_10013607; scaffold404 WUBlastX DNA_Zator 335877 338735 1397 + . . scaffold40438 flankbed promoter 9407 9766 . - . ID=CGI_10004080; scaffold40438 WUBlastX LINE_L1 9407 9766 75 - . . scaffold40438 flankbed promoter 9407 9694 . - . ID=CGI_10004080; scaffold40438 WUBlastX LINE_L2 9407 9694 92 - . . scaffold40438 flankbed promoter 9407 9889 . - . ID=CGI_10004080; scaffold40438 WUBlastX LINE_L2 9407 9889 68 - . . scaffold40438 flankbed promoter 9351 9700 . - . ID=CGI_10004080; scaffold40438 WUBlastX LINE_L2 9326 9700 41 - . . scaffold40438 flankbed promoter 53735 54071 . + . ID=CGI_10004081; scaffold40438 TRF Tandem_Repeat 53735 54071 356 + . . scaffold40438 flankbed promoter 83538 83972 . + . ID=CGI_10004082; scaffold40438 WUBlastX DNA_Maverick 83538 83972 44 + . . scaffold40440 flankbed promoter 15484 15818 . + . ID=CGI_10004142; scaffold40440 WUBlastX LTR_Gypsy 14853 15818 396 - . . scaffold40442 flankbed promoter 49021 49158 . - . ID=CGI_10004108; scaffold40442 WUBlastX LINE_L2 49021 49158 56 + . . scaffold40442 flankbed promoter 58294 58335 . - . ID=CGI_10004109; scaffold40442 TRF Tandem_Repeat 58294 58335 66 + . . scaffold40454 flankbed promoter 13895 13930 . + . ID=CGI_10004116; scaffold40454 TRF Tandem_Repeat 13895 13930 72 + . . scaffold40454 flankbed promoter 15593 15655 . + . ID=CGI_10004117; scaffold40454 TRF Tandem_Repeat 15593 15655 126 + . . scaffold40454 flankbed promoter 80258 80334 . - . ID=CGI_10004120; scaffold40454 TRF Tandem_Repeat 80258 80334 93 + . . scaffold40456 flankbed promoter 13686 13976 . - . ID=CGI_10004087; scaffold40456 TRF Tandem_Repeat 13686 13976 266 + . . scaffold40456 flankbed promoter 14492 14660 . - . ID=CGI_10004087; scaffold40456 TRF Tandem_Repeat 14492 16238 2522 + . . scaffold40456 flankbed promoter 14492 14660 . - . ID=CGI_10004087; scaffold40456 TRF Tandem_Repeat 14492 18117 5528 + . . scaffold40512 flankbed promoter 55381 55428 . - . ID=CGI_10004194; scaffold40512 WUBlastX DNA_Kolobok-IS4 55381 55599 68 - . . scaffold40512 flankbed promoter 54429 54464 . - . ID=CGI_10004194; scaffold40512 WUBlastX DNA_IS4EU 53550 54464 446 - . . scaffold40512 flankbed promoter 55327 55428 . - . ID=CGI_10004194; scaffold40512 WUBlastX DNA_IS4EU 55327 55611 46 - . . scaffold40514 flankbed promoter 4726 4773 . - . ID=CGI_10004129; scaffold40514 TRF Tandem_Repeat 4726 4773 96 + . . scaffold40514 flankbed promoter 27210 27247 . + . ID=CGI_10004130; scaffold40514 TRF Tandem_Repeat 27210 27247 58 + . . scaffold40514 flankbed promoter 63500 63532 . - . ID=CGI_10004133; scaffold40514 TRF Tandem_Repeat 63500 63532 66 + . . scaffold40548 flankbed promoter 25668 25724 . - . ID=CGI_10004175; scaffold40548 TRF Tandem_Repeat 25668 25724 114 + . . scaffold40556 flankbed promoter 88976 89080 . - . ID=CGI_10004254; scaffold40556 WUBlastX LTR_Gypsy 88739 89080 64 - . . scaffold40556 flankbed promoter 88976 89074 . - . ID=CGI_10004254; scaffold40556 WUBlastX LTR_Gypsy 88583 89074 37 - . . scaffold40564 flankbed promoter 6397 6636 . + . ID=CGI_10004207; scaffold40564 WUBlastX LINE_CR1 6397 6636 81 + . . scaffold40584 flankbed promoter 16012 16686 . + . ID=CGI_10004248; scaffold40584 TRF Tandem_Repeat 15726 16686 1441 + . . scaffold40584 flankbed promoter 38410 39129 . + . ID=CGI_10004249; scaffold40584 TRF Tandem_Repeat 38410 39129 848 + . . scaffold40586 flankbed promoter 92514 92562 . + . ID=CGI_10004239; scaffold40586 TRF Tandem_Repeat 92514 92562 98 + . . scaffold406 flankbed promoter 220633 220672 . - . ID=CGI_10023841; scaffold406 TRF Tandem_Repeat 220633 220672 80 + . . scaffold406 flankbed promoter 220735 220789 . - . ID=CGI_10023841; scaffold406 TRF Tandem_Repeat 220735 220789 110 + . . scaffold406 flankbed promoter 274522 274573 . - . ID=CGI_10023842; scaffold406 TRF Tandem_Repeat 274522 274573 77 + . . scaffold406 flankbed promoter 351047 351080 . + . ID=CGI_10023843; scaffold406 TRF Tandem_Repeat 351047 351080 68 + . . scaffold406 flankbed promoter 440653 441078 . - . ID=CGI_10023849; scaffold406 WUBlastX LINE_L2 440653 441078 261 + . . scaffold406 flankbed promoter 440569 441000 . - . ID=CGI_10023849; scaffold406 WUBlastX LINE_L2 440569 441000 62 + . . scaffold406 flankbed promoter 440725 441123 . - . ID=CGI_10023849; scaffold406 WUBlastX LINE_CR1-L2 440725 441159 189 + . . scaffold406 flankbed promoter 440710 441123 . - . ID=CGI_10023849; scaffold406 WUBlastX LINE_L2 440710 441252 50 + . . scaffold406 flankbed promoter 577929 578015 . - . ID=CGI_10023859; scaffold406 WUBlastX DNA_hAT-Blackja 577929 578015 30 - . . scaffold406 flankbed promoter 640847 641838 . + . ID=CGI_10023862; scaffold406 TRF Tandem_Repeat 640847 642616 2322 + . . scaffold406 flankbed promoter 662323 662419 . - . ID=CGI_10023863; scaffold406 WUBlastX DNA_TcMar-IS630 662323 662709 67 - . . scaffold406 flankbed promoter 662302 662419 . - . ID=CGI_10023863; scaffold406 WUBlastX DNA_TcMar-ISRm1 662302 662565 90 - . . scaffold406 flankbed promoter 664630 664932 . - . ID=CGI_10023865; scaffold406 WUBlastX DNA_TcMar-ISRm1 664369 664932 55 - . . scaffold406 flankbed promoter 695762 695890 . + . ID=CGI_10023868; scaffold406 TRF Tandem_Repeat 695762 695890 109 + . . scaffold40606 flankbed promoter 38293 38313 . + . ID=CGI_10004279; scaffold40606 WUBlastX DNA_IS4EU 38293 38643 73 + . . scaffold40644 flankbed promoter 77769 77867 . - . ID=CGI_10004306; scaffold40644 WUBlastX LINE_Penelope 77667 77867 41 + . . scaffold40680 flankbed promoter 27042 27134 . + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27042 27329 132 + . . scaffold407 flankbed promoter 18465 18862 . + . ID=CGI_10002627; scaffold407 TRF Tandem_Repeat 18381 18862 503 + . . scaffold40744 flankbed promoter 6421 6473 . + . ID=CGI_10004375; scaffold40744 TRF Tandem_Repeat 5400 6473 766 + . . scaffold40744 flankbed promoter 6421 6472 . + . ID=CGI_10004375; scaffold40744 TRF Tandem_Repeat 5400 6472 1266 + . . scaffold40744 flankbed promoter 6421 6473 . + . ID=CGI_10004375; scaffold40744 TRF Tandem_Repeat 5400 6473 1286 + . . scaffold40786 flankbed promoter 7206 7256 . + . ID=CGI_10004439; scaffold40786 WUBlastX LINE_L2 7206 8423 618 + . . scaffold40786 flankbed promoter 7035 7256 . + . ID=CGI_10004439; scaffold40786 WUBlastX LINE_L2 7035 7763 128 + . . scaffold40786 flankbed promoter 6257 6609 . + . ID=CGI_10004439; scaffold40786 WUBlastX LINE_RTE-X 6106 6609 72 + . . scaffold408 flankbed promoter 102182 102297 . + . ID=CGI_10023217; scaffold408 TRF Tandem_Repeat 101999 102297 535 + . . scaffold408 flankbed promoter 177180 177509 . - . ID=CGI_10023226; scaffold408 WUBlastX LINE_CR1-L2 177180 177509 21 + . . scaffold408 flankbed promoter 177180 177452 . - . ID=CGI_10023226; scaffold408 WUBlastX LINE_L2 177180 177452 65 + . . scaffold408 flankbed promoter 177213 177509 . + . ID=CGI_10023227; scaffold408 WUBlastX LINE_CR1-L2 177180 177509 21 + . . scaffold408 flankbed promoter 177213 177452 . + . ID=CGI_10023227; scaffold408 WUBlastX LINE_L2 177180 177452 65 + . . scaffold408 flankbed promoter 638760 638893 . - . ID=CGI_10023255; scaffold408 TRF Tandem_Repeat 638760 639593 776 + . . scaffold408 flankbed promoter 662700 662739 . - . ID=CGI_10023256; scaffold408 TRF Tandem_Repeat 662700 663049 451 + . . scaffold408 flankbed promoter 662700 662739 . - . ID=CGI_10023256; scaffold408 TRF Tandem_Repeat 662700 663049 340 + . . scaffold408 flankbed promoter 662713 662739 . - . ID=CGI_10023256; scaffold408 TRF Tandem_Repeat 662713 663059 275 + . . scaffold40808 flankbed promoter 85672 85990 . - . ID=CGI_10004447; scaffold40808 TRF Tandem_Repeat 85672 85990 577 + . . scaffold40832 flankbed promoter 23399 23435 . + . ID=CGI_10004453; scaffold40832 TRF Tandem_Repeat 23399 23435 74 + . . scaffold40832 flankbed promoter 82561 82635 . + . ID=CGI_10004459; scaffold40832 WUBlastX LINE_L1-Tx1 82561 82635 23 - . . scaffold40832 flankbed promoter 82546 82632 . + . ID=CGI_10004459; scaffold40832 WUBlastX LINE_RTE-X 82546 82632 22 - . . scaffold40856 flankbed promoter 90855 90902 . - . ID=CGI_10004527; scaffold40856 TRF Tandem_Repeat 90855 90902 96 + . . scaffold40874 flankbed promoter 68114 68383 . + . ID=CGI_10004438; scaffold40874 TRF Tandem_Repeat 66631 68383 2986 + . . scaffold40894 flankbed promoter 34366 34718 . - . ID=CGI_10004537; scaffold40894 TRF Tandem_Repeat 34366 34718 690 + . . scaffold40894 flankbed promoter 81700 81731 . + . ID=CGI_10004540; scaffold40894 TRF Tandem_Repeat 81700 81731 64 + . . scaffold409 flankbed promoter 92371 92410 . - . ID=CGI_10004319; scaffold409 TRF Tandem_Repeat 92371 92410 80 + . . scaffold40910 flankbed promoter 73859 74506 . - . ID=CGI_10004546; scaffold40910 TRF Tandem_Repeat 73859 74506 1107 + . . scaffold40910 flankbed promoter 88871 88909 . - . ID=CGI_10004548; scaffold40910 TRF Tandem_Repeat 88871 88909 78 + . . scaffold40938 flankbed promoter 39547 40104 . - . ID=CGI_10004532; scaffold40938 TRF Tandem_Repeat 39547 41681 2211 + . . scaffold40960 flankbed promoter 22231 22524 . + . ID=CGI_10004561; scaffold40960 WUBlastX LINE_RTE-X 22231 22524 168 - . . scaffold40960 flankbed promoter 22177 22527 . + . ID=CGI_10004561; scaffold40960 WUBlastX LINE_RTE-X 22177 22527 162 - . . scaffold40960 flankbed promoter 22471 22539 . + . ID=CGI_10004561; scaffold40960 WUBlastX LINE_RTE-X 22471 22539 60 - . . scaffold40960 flankbed promoter 21951 22207 . + . ID=CGI_10004561; scaffold40960 WUBlastX LINE_RTE-X 21710 22207 99 - . . scaffold40960 flankbed promoter 91115 91280 . - . ID=CGI_10004568; scaffold40960 TRF Tandem_Repeat 91115 91280 251 + . . scaffold40982 flankbed promoter 25681 25740 . - . ID=CGI_10004616; scaffold40982 TRF Tandem_Repeat 25681 25740 120 + . . scaffold41008 flankbed promoter 58701 59168 . + . ID=CGI_10004641; scaffold41008 WUBlastX LTR_Ngaro 58701 59168 181 + . . scaffold41008 flankbed promoter 58528 58726 . + . ID=CGI_10004641; scaffold41008 WUBlastX LTR_Ngaro 58268 58726 150 + . . scaffold41034 flankbed promoter 39916 39973 . + . ID=CGI_10004651; scaffold41034 TRF Tandem_Repeat 39916 39973 107 + . . scaffold41064 flankbed promoter 15590 15679 . + . ID=CGI_10004655; scaffold41064 TRF Tandem_Repeat 15590 15679 114 + . . scaffold41082 flankbed promoter 38856 39146 . + . ID=CGI_10004676; scaffold41082 TRF Tandem_Repeat 38856 39146 134 + . . scaffold41082 flankbed promoter 38854 39171 . + . ID=CGI_10004676; scaffold41082 TRF Tandem_Repeat 38854 39171 582 + . . scaffold41162 flankbed promoter 68662 69027 . + . ID=CGI_10004776; scaffold41162 WUBlastX LINE_L1-Tx1 68662 69027 46 + . . scaffold41162 flankbed promoter 68278 68811 . + . ID=CGI_10004776; scaffold41162 WUBlastX LINE_L1-Tx1 68278 68811 52 + . . scaffold41162 flankbed promoter 69062 69211 . + . ID=CGI_10004776; scaffold41162 WUBlastX LINE_L1-Tx1 69062 69211 22 + . . scaffold41164 flankbed promoter 41297 42061 . + . ID=CGI_10004761; scaffold41164 WUBlastX DNA_hAT 41297 42061 144 + . . scaffold41164 flankbed promoter 69572 69619 . + . ID=CGI_10004763; scaffold41164 TRF Tandem_Repeat 69572 69619 89 + . . scaffold41164 flankbed promoter 69551 69619 . + . ID=CGI_10004763; scaffold41164 TRF Tandem_Repeat 69525 69619 62 + . . scaffold412 flankbed promoter 241885 241915 . - . ID=CGI_10018566; scaffold412 TRF Tandem_Repeat 241885 241915 53 + . . scaffold412 flankbed promoter 353366 353507 . + . ID=CGI_10018575; scaffold412 TRF Tandem_Repeat 353366 353507 126 + . . scaffold412 flankbed promoter 379829 380091 . + . ID=CGI_10018577; scaffold412 TRF Tandem_Repeat 379829 380091 233 + . . scaffold412 flankbed promoter 380657 380662 . + . ID=CGI_10018577; scaffold412 WUBlastX LINE_CR1-L2 380657 380782 23 + . . scaffold412 flankbed promoter 434290 434333 . - . ID=CGI_10018579; scaffold412 TRF Tandem_Repeat 434290 434333 72 + . . scaffold412 flankbed promoter 479253 479491 . - . ID=CGI_10018583; scaffold412 TRF Tandem_Repeat 479253 479491 187 + . . scaffold412 flankbed promoter 479238 479504 . - . ID=CGI_10018583; scaffold412 TRF Tandem_Repeat 479238 479504 365 + . . scaffold41206 flankbed promoter 8795 8901 . + . ID=CGI_10004789; scaffold41206 TRF Tandem_Repeat 8795 8901 142 + . . scaffold41206 flankbed promoter 23199 23229 . + . ID=CGI_10004791; scaffold41206 TRF Tandem_Repeat 23199 23229 53 + . . scaffold41210 flankbed promoter 102241 102591 . + . ID=CGI_10004806; scaffold41210 WUBlastX LTR_Gypsy 102241 102591 82 + . . scaffold41210 flankbed promoter 102322 102621 . + . ID=CGI_10004806; scaffold41210 WUBlastX LTR_Caulimoviru 102322 102795 26 + . . scaffold41210 flankbed promoter 101947 102120 . + . ID=CGI_10004806; scaffold41210 WUBlastX LTR_Copia 101947 102120 22 + . . scaffold41210 flankbed promoter 102277 102621 . + . ID=CGI_10004806; scaffold41210 WUBlastX LTR_Gypsy-Cigr 102277 102654 72 + . . scaffold41210 flankbed promoter 101818 102066 . + . ID=CGI_10004806; scaffold41210 WUBlastX LTR_Copia 101818 102066 44 + . . scaffold41210 flankbed promoter 102241 102591 . + . ID=CGI_10004807; scaffold41210 WUBlastX LTR_Gypsy 102241 102591 82 + . . scaffold41210 flankbed promoter 102322 102795 . + . ID=CGI_10004807; scaffold41210 WUBlastX LTR_Caulimoviru 102322 102795 26 + . . scaffold41210 flankbed promoter 102013 102120 . + . ID=CGI_10004807; scaffold41210 WUBlastX LTR_Copia 101947 102120 22 + . . scaffold41210 flankbed promoter 102277 102654 . + . ID=CGI_10004807; scaffold41210 WUBlastX LTR_Gypsy-Cigr 102277 102654 72 + . . scaffold41210 flankbed promoter 102013 102066 . + . ID=CGI_10004807; scaffold41210 WUBlastX LTR_Copia 101818 102066 44 + . . scaffold41210 flankbed promoter 102673 102702 . + . ID=CGI_10004807; scaffold41210 WUBlastX LTR_Gypsy 102673 102702 27 + . . scaffold41212 flankbed promoter 76465 76546 . + . ID=CGI_10004814; scaffold41212 TRF Tandem_Repeat 76465 76546 78 + . . scaffold41220 flankbed promoter 91090 91827 . - . ID=CGI_10004859; scaffold41220 TRF Tandem_Repeat 91090 91832 625 + . . scaffold41220 flankbed promoter 91090 91827 . - . ID=CGI_10004859; scaffold41220 TRF Tandem_Repeat 91090 91832 788 + . . scaffold41228 flankbed promoter 58049 58158 . + . ID=CGI_10004863; scaffold41228 TRF Tandem_Repeat 58049 58158 148 + . . scaffold41242 flankbed promoter 28354 28635 . + . ID=CGI_10004880; scaffold41242 WUBlastX LTR_Pao 28354 28635 42 + . . scaffold41242 flankbed promoter 27863 27976 . + . ID=CGI_10004880; scaffold41242 WUBlastX LTR_Pao 27863 27976 33 + . . scaffold41242 flankbed promoter 28629 28688 . + . ID=CGI_10004880; scaffold41242 WUBlastX LTR_Pao 28629 28688 24 + . . scaffold41242 flankbed promoter 27989 28141 . + . ID=CGI_10004880; scaffold41242 WUBlastX LTR_Pao 27989 28141 32 + . . scaffold41242 flankbed promoter 29411 29518 . + . ID=CGI_10004881; scaffold41242 WUBlastX LTR_Gypsy 29411 29998 83 + . . scaffold41242 flankbed promoter 28519 28635 . + . ID=CGI_10004881; scaffold41242 WUBlastX LTR_Pao 28354 28635 42 + . . scaffold41242 flankbed promoter 29405 29518 . + . ID=CGI_10004881; scaffold41242 WUBlastX LTR_Gypsy 29405 30301 47 + . . scaffold41242 flankbed promoter 28629 28688 . + . ID=CGI_10004881; scaffold41242 WUBlastX LTR_Pao 28629 28688 24 + . . scaffold41242 flankbed promoter 29411 29998 . + . ID=CGI_10004882; scaffold41242 WUBlastX LTR_Gypsy 29411 29998 83 + . . scaffold41242 flankbed promoter 29405 30074 . + . ID=CGI_10004882; scaffold41242 WUBlastX LTR_Gypsy 29405 30301 47 + . . scaffold41242 flankbed promoter 42817 42885 . - . ID=CGI_10004883; scaffold41242 TRF Tandem_Repeat 42817 42885 138 + . . scaffold41296 flankbed promoter 14566 15069 . - . ID=CGI_10004838; scaffold41296 TRF Tandem_Repeat 14566 15328 808 + . . scaffold41296 flankbed promoter 97281 97529 . + . ID=CGI_10004842; scaffold41296 TRF Tandem_Repeat 97281 97529 331 + . . scaffold41296 flankbed promoter 97281 97529 . + . ID=CGI_10004842; scaffold41296 TRF Tandem_Repeat 97281 97529 367 + . . scaffold41296 flankbed promoter 107813 107838 . + . ID=CGI_10004843; scaffold41296 WUBlastX LINE_RTE-X 107281 107838 48 - . . scaffold413 flankbed promoter 19197 19483 . - . ID=CGI_10022791; scaffold413 TRF Tandem_Repeat 19197 19483 121 + . . scaffold413 flankbed promoter 19296 19483 . - . ID=CGI_10022791; scaffold413 TRF Tandem_Repeat 19296 19483 187 + . . scaffold413 flankbed promoter 20032 20114 . - . ID=CGI_10022791; scaffold413 TRF Tandem_Repeat 20032 20221 184 + . . scaffold413 flankbed promoter 76611 76656 . + . ID=CGI_10022793; scaffold413 TRF Tandem_Repeat 76545 76656 206 + . . scaffold413 flankbed promoter 77069 77119 . + . ID=CGI_10022793; scaffold413 TRF Tandem_Repeat 77069 77119 102 + . . scaffold413 flankbed promoter 90394 90666 . + . ID=CGI_10022794; scaffold413 TRF Tandem_Repeat 90394 90666 300 + . . scaffold413 flankbed promoter 491231 491270 . + . ID=CGI_10022806; scaffold413 TRF Tandem_Repeat 491231 491270 80 + . . scaffold413 flankbed promoter 567710 567777 . - . ID=CGI_10022811; scaffold413 TRF Tandem_Repeat 567710 567777 127 + . . scaffold413 flankbed promoter 576047 576080 . + . ID=CGI_10022814; scaffold413 TRF Tandem_Repeat 576047 576080 68 + . . scaffold413 flankbed promoter 608687 608827 . - . ID=CGI_10022818; scaffold413 TRF Tandem_Repeat 608687 608827 156 + . . scaffold413 flankbed promoter 706794 706830 . - . ID=CGI_10022824; scaffold413 TRF Tandem_Repeat 706794 706830 74 + . . scaffold41312 flankbed promoter 7933 7995 . + . ID=CGI_10004986; scaffold41312 TRF Tandem_Repeat 7933 7995 126 + . . scaffold41344 flankbed promoter 4867 4989 . + . ID=CGI_10004977; scaffold41344 WUBlastX DNA_TcMar-Tc1 3967 4989 404 + . . scaffold41344 flankbed promoter 6425 6526 . + . ID=CGI_10004978; scaffold41344 WUBlastX LINE_L1-Tx1 6425 6538 32 + . . scaffold41344 flankbed promoter 6009 6428 . + . ID=CGI_10004978; scaffold41344 WUBlastX LINE_L1 6009 6428 54 + . . scaffold41344 flankbed promoter 6126 6428 . + . ID=CGI_10004978; scaffold41344 WUBlastX LINE_L2 6126 6428 70 + . . scaffold41344 flankbed promoter 74429 74509 . + . ID=CGI_10004981; scaffold41344 TRF Tandem_Repeat 74429 74509 144 + . . scaffold41358 flankbed promoter 30535 30555 . - . ID=CGI_10004968; scaffold41358 WUBlastX LINE_L1 30535 30600 23 - . . scaffold41358 flankbed promoter 33413 33482 . + . ID=CGI_10004969; scaffold41358 TRF Tandem_Repeat 33413 33482 140 + . . scaffold41380 flankbed promoter 64904 64949 . - . ID=CGI_10005040; scaffold41380 TRF Tandem_Repeat 64904 64949 92 + . . scaffold41380 flankbed promoter 64904 64949 . + . ID=CGI_10005041; scaffold41380 TRF Tandem_Repeat 64904 64949 92 + . . scaffold41388 flankbed promoter 61047 61308 . - . ID=CGI_10005014; scaffold41388 WUBlastX LINE_CR1-L2 61047 61343 81 - . . scaffold41388 flankbed promoter 61047 61308 . - . ID=CGI_10005014; scaffold41388 WUBlastX LINE_CR1-L2 61047 61415 62 - . . scaffold41390 flankbed promoter 62103 62284 . - . ID=CGI_10004990; scaffold41390 WUBlastX DNA_Kolobok-Hyd 62103 62480 74 - . . scaffold41390 flankbed promoter 61285 61356 . - . ID=CGI_10004990; scaffold41390 WUBlastX DNA_Kolobok-Hyd 61147 61356 26 - . . scaffold41400 flankbed promoter 47107 47260 . + . ID=CGI_10005032; scaffold41400 TRF Tandem_Repeat 47107 47260 164 + . . scaffold41400 flankbed promoter 116717 116848 . - . ID=CGI_10005037; scaffold41400 WUBlastX DNA_IS4EU 116717 116848 60 + . . scaffold41400 flankbed promoter 115949 116506 . - . ID=CGI_10005037; scaffold41400 WUBlastX DNA_IS4EU 115949 116506 234 + . . scaffold41400 flankbed promoter 116738 116911 . - . ID=CGI_10005037; scaffold41400 WUBlastX DNA_IS4EU 116738 116911 98 + . . scaffold41400 flankbed promoter 115949 116074 . + . ID=CGI_10005038; scaffold41400 WUBlastX DNA_IS4EU 115949 116506 234 + . . scaffold41436 flankbed promoter 9502 9547 . - . ID=CGI_10005094; scaffold41436 TRF Tandem_Repeat 9502 9547 92 + . . scaffold41436 flankbed promoter 81004 81198 . - . ID=CGI_10005101; scaffold41436 WUBlastX DNA_TcMar-Marin 81004 81198 52 + . . scaffold41436 flankbed promoter 80929 81201 . - . ID=CGI_10005101; scaffold41436 WUBlastX DNA_TcMar-Marin 80929 81201 37 + . . scaffold41452 flankbed promoter 38805 38836 . + . ID=CGI_10005079; scaffold41452 TRF Tandem_Repeat 38750 38836 61 + . . scaffold41452 flankbed promoter 54398 54523 . - . ID=CGI_10005080; scaffold41452 WUBlastX LINE_L2 54398 54523 39 + . . scaffold41530 flankbed promoter 9872 9928 . + . ID=CGI_10005182; scaffold41530 TRF Tandem_Repeat 9872 9928 71 + . . scaffold41530 flankbed promoter 9953 10279 . + . ID=CGI_10005182; scaffold41530 WUBlastX LINE_L2 9953 10279 44 + . . scaffold41530 flankbed promoter 52705 52740 . - . ID=CGI_10005186; scaffold41530 TRF Tandem_Repeat 52705 52740 72 + . . scaffold41530 flankbed promoter 52974 53103 . - . ID=CGI_10005186; scaffold41530 TRF Tandem_Repeat 52974 53103 129 + . . scaffold41540 flankbed promoter 50701 50742 . - . ID=CGI_10005244; scaffold41540 TRF Tandem_Repeat 50701 50742 56 + . . scaffold41540 flankbed promoter 50701 50740 . - . ID=CGI_10005244; scaffold41540 TRF Tandem_Repeat 50701 50740 55 + . . scaffold41550 flankbed promoter 22856 23098 . - . ID=CGI_10005236; scaffold41550 TRF Tandem_Repeat 22856 23098 106 + . . scaffold41560 flankbed promoter 88892 88934 . - . ID=CGI_10005282; scaffold41560 TRF Tandem_Repeat 88892 88934 86 + . . scaffold41560 flankbed promoter 105439 105876 . + . ID=CGI_10005285; scaffold41560 WUBlastX LINE_L1-Tx1 105154 105876 143 + . . scaffold41560 flankbed promoter 105439 105894 . + . ID=CGI_10005285; scaffold41560 WUBlastX LINE_L1-Tx1 105286 105894 164 + . . scaffold41568 flankbed promoter 69899 69988 . + . ID=CGI_10005299; scaffold41568 WUBlastX DNA_IS4EU 69899 70441 85 + . . scaffold41572 flankbed promoter 42913 43047 . + . ID=CGI_10005294; scaffold41572 TRF Tandem_Repeat 42913 43047 144 + . . scaffold41572 flankbed promoter 111576 111618 . + . ID=CGI_10005297; scaffold41572 TRF Tandem_Repeat 111576 111618 86 + . . scaffold41572 flankbed promoter 111141 111339 . + . ID=CGI_10005297; scaffold41572 WUBlastX LINE_RTE-X 109960 111339 537 - . . scaffold41598 flankbed promoter 4846 4975 . - . ID=CGI_10005302; scaffold41598 TRF Tandem_Repeat 4846 4975 63 + . . scaffold416 flankbed promoter 137325 137390 . + . ID=CGI_10014740; scaffold416 TRF Tandem_Repeat 137325 137390 107 + . . scaffold416 flankbed promoter 272427 272500 . - . ID=CGI_10014744; scaffold416 WUBlastX LINE_Penelope 272427 272876 70 - . . scaffold41628 flankbed promoter 49679 49811 . - . ID=CGI_10005328; scaffold41628 TRF Tandem_Repeat 49679 49811 157 + . . scaffold41628 flankbed promoter 69445 69531 . + . ID=CGI_10005331; scaffold41628 TRF Tandem_Repeat 69445 69531 54 + . . scaffold41652 flankbed promoter 60734 60783 . + . ID=CGI_10005383; scaffold41652 TRF Tandem_Repeat 60714 60783 140 + . . scaffold41684 flankbed promoter 88883 88916 . - . ID=CGI_10005435; scaffold41684 TRF Tandem_Repeat 88883 88916 68 + . . scaffold41684 flankbed promoter 89318 89360 . - . ID=CGI_10005435; scaffold41684 TRF Tandem_Repeat 89318 89360 59 + . . scaffold41700 flankbed promoter 9998 10001 . + . ID=CGI_10005501; scaffold41700 WUBlastX LTR_Gypsy 9660 10001 63 - . . scaffold41700 flankbed promoter 110101 111009 . + . ID=CGI_10005504; scaffold41700 WUBlastX LINE_CR1 110101 111399 992 + . . scaffold41730 flankbed promoter 246 367 . + . ID=CGI_10005525; scaffold41730 TRF Tandem_Repeat 246 367 54 + . . scaffold41730 flankbed promoter 1064 1107 . + . ID=CGI_10005525; scaffold41730 TRF Tandem_Repeat 1064 1107 88 + . . scaffold41730 flankbed promoter 104526 104550 . - . ID=CGI_10005529; scaffold41730 TRF Tandem_Repeat 104526 104550 50 + . . scaffold41730 flankbed promoter 104186 104311 . - . ID=CGI_10005529; scaffold41730 WUBlastX LINE_L2 104186 104311 27 - . . scaffold41730 flankbed promoter 104283 104522 . - . ID=CGI_10005529; scaffold41730 WUBlastX LINE_L2 104283 104522 36 - . . scaffold41732 flankbed promoter 120386 120421 . - . ID=CGI_10005486; scaffold41732 TRF Tandem_Repeat 120386 120421 72 + . . scaffold41740 flankbed promoter 1597 1986 . - . ID=CGI_10005581; scaffold41740 WUBlastX LINE_L1 1597 1986 46 - . . scaffold41740 flankbed promoter 114069 114121 . - . ID=CGI_10005587; scaffold41740 TRF Tandem_Repeat 114069 114121 97 + . . scaffold41754 flankbed promoter 108121 108162 . - . ID=CGI_10005562; scaffold41754 TRF Tandem_Repeat 108121 108162 84 + . . scaffold41754 flankbed promoter 129043 129191 . - . ID=CGI_10005564; scaffold41754 TRF Tandem_Repeat 129043 129191 97 + . . scaffold41754 flankbed promoter 129107 129253 . - . ID=CGI_10005564; scaffold41754 TRF Tandem_Repeat 129107 129253 73 + . . scaffold41762 flankbed promoter 1949 1999 . + . ID=CGI_10005607; scaffold41762 TRF Tandem_Repeat 1949 1999 102 + . . scaffold41766 flankbed promoter 37857 37910 . - . ID=CGI_10005601; scaffold41766 TRF Tandem_Repeat 37857 37910 101 + . . scaffold41772 flankbed promoter 66044 66046 . + . ID=CGI_10005620; scaffold41772 TRF Tandem_Repeat 65995 66046 104 + . . scaffold41772 flankbed promoter 66361 66404 . + . ID=CGI_10005620; scaffold41772 TRF Tandem_Repeat 66361 66404 88 + . . scaffold41772 flankbed promoter 66613 66649 . + . ID=CGI_10005620; scaffold41772 TRF Tandem_Repeat 66613 66649 56 + . . scaffold41772 flankbed promoter 66719 66769 . + . ID=CGI_10005620; scaffold41772 TRF Tandem_Repeat 66719 66769 102 + . . scaffold41776 flankbed promoter 33490 33684 . + . ID=CGI_10005630; scaffold41776 WUBlastX DNA_P 33490 33771 93 + . . scaffold41786 flankbed promoter 95273 95317 . + . ID=CGI_10005625; scaffold41786 TRF Tandem_Repeat 95273 95317 90 + . . scaffold41786 flankbed promoter 109057 109062 . + . ID=CGI_10005626; scaffold41786 WUBlastX DNA_hAT-Tip100 109057 109458 22 + . . scaffold41816 flankbed promoter 83786 83811 . + . ID=CGI_10005649; scaffold41816 TRF Tandem_Repeat 83786 83811 52 + . . scaffold41824 flankbed promoter 60341 60391 . + . ID=CGI_10005709; scaffold41824 TRF Tandem_Repeat 60341 60391 95 + . . scaffold41828 flankbed promoter 71852 72072 . - . ID=CGI_10005674; scaffold41828 TRF Tandem_Repeat 71852 72072 268 + . . scaffold41828 flankbed promoter 72112 72216 . - . ID=CGI_10005674; scaffold41828 WUBlastX LINE_RTE-BovB 72112 72216 43 + . . scaffold41828 flankbed promoter 78322 78387 . - . ID=CGI_10005677; scaffold41828 TRF Tandem_Repeat 78322 78387 80 + . . scaffold41858 flankbed promoter 13446 13485 . + . ID=CGI_10005758; scaffold41858 TRF Tandem_Repeat 13446 13485 64 + . . scaffold41858 flankbed promoter 22520 22632 . - . ID=CGI_10005760; scaffold41858 TRF Tandem_Repeat 22520 22632 153 + . . scaffold41858 flankbed promoter 95336 95389 . - . ID=CGI_10005768; scaffold41858 TRF Tandem_Repeat 95336 95389 108 + . . scaffold41882 flankbed promoter 81145 81378 . - . ID=CGI_10005782; scaffold41882 WUBlastX LTR_Gypsy 81145 81378 92 - . . scaffold41896 flankbed promoter 52896 52923 . - . ID=CGI_10005805; scaffold41896 TRF Tandem_Repeat 52896 52923 56 + . . scaffold41896 flankbed promoter 67217 67241 . - . ID=CGI_10005807; scaffold41896 TRF Tandem_Repeat 67217 67241 50 + . . scaffold41898 flankbed promoter 759 1380 . + . ID=CGI_10005830; scaffold41898 WUBlastX DNA_IS4EU 739 1380 232 - . . scaffold41898 flankbed promoter 99229 99657 . - . ID=CGI_10005832; scaffold41898 WUBlastX LTR_Gypsy 99037 99657 68 - . . scaffold41898 flankbed promoter 99229 99522 . - . ID=CGI_10005832; scaffold41898 WUBlastX LTR_Gypsy 98452 99522 230 - . . scaffold41898 flankbed promoter 99229 99549 . - . ID=CGI_10005832; scaffold41898 WUBlastX LTR_Gypsy 98848 99549 243 - . . scaffold419 flankbed promoter 46775 46820 . + . ID=CGI_10028319; scaffold419 TRF Tandem_Repeat 46775 46820 92 + . . scaffold419 flankbed promoter 194189 194297 . - . ID=CGI_10028330; scaffold419 WUBlastX LINE_CR1 194189 194821 113 - . . scaffold419 flankbed promoter 194099 194297 . - . ID=CGI_10028330; scaffold419 WUBlastX LINE_CR1 194099 194713 119 - . . scaffold419 flankbed promoter 193873 194175 . - . ID=CGI_10028330; scaffold419 WUBlastX LINE_CR1-L2 193873 194175 66 - . . scaffold419 flankbed promoter 193727 193855 . - . ID=CGI_10028330; scaffold419 WUBlastX LINE_I 193727 193855 23 - . . scaffold419 flankbed promoter 194177 194297 . - . ID=CGI_10028330; scaffold419 WUBlastX LINE_L2 194177 194683 354 - . . scaffold419 flankbed promoter 240646 240820 . + . ID=CGI_10028336; scaffold419 TRF Tandem_Repeat 240646 240820 305 + . . scaffold419 flankbed promoter 410844 410890 . + . ID=CGI_10028342; scaffold419 TRF Tandem_Repeat 410844 410890 94 + . . scaffold419 flankbed promoter 460312 460396 . + . ID=CGI_10028346; scaffold419 TRF Tandem_Repeat 460107 460396 328 + . . scaffold419 flankbed promoter 460312 460396 . + . ID=CGI_10028346; scaffold419 TRF Tandem_Repeat 460112 460396 327 + . . scaffold419 flankbed promoter 526244 526296 . + . ID=CGI_10028348; scaffold419 WUBlastX LTR_Gypsy 526003 526296 264 - . . scaffold419 flankbed promoter 843575 844516 . - . ID=CGI_10028371; scaffold419 TRF Tandem_Repeat 843575 845068 1986 + . . scaffold419 flankbed promoter 894743 894889 . + . ID=CGI_10028373; scaffold419 WUBlastX DNA_IS4EU 894743 895069 70 + . . scaffold419 flankbed promoter 945439 946284 . + . ID=CGI_10028375; scaffold419 WUBlastX RC_Helitron 945112 946284 499 - . . scaffold419 flankbed promoter 994946 995005 . + . ID=CGI_10028381; scaffold419 TRF Tandem_Repeat 994946 995005 120 + . . scaffold419 flankbed promoter 1075144 1075201 . - . ID=CGI_10028385; scaffold419 TRF Tandem_Repeat 1075144 1075201 116 + . . scaffold419 flankbed promoter 1075144 1075201 . + . ID=CGI_10028386; scaffold419 TRF Tandem_Repeat 1075144 1075201 116 + . . scaffold41968 flankbed promoter 79544 79705 . - . ID=CGI_10005869; scaffold41968 WUBlastX LINE_RTE-X 79544 79705 42 - . . scaffold41968 flankbed promoter 79440 79547 . - . ID=CGI_10005869; scaffold41968 WUBlastX LINE_RTE-X 79440 79547 28 - . . scaffold41968 flankbed promoter 79568 79735 . - . ID=CGI_10005869; scaffold41968 WUBlastX LINE_RTE-X 79568 79735 32 - . . scaffold41968 flankbed promoter 79544 79705 . + . ID=CGI_10005870; scaffold41968 WUBlastX LINE_RTE-X 79544 79705 42 - . . scaffold41968 flankbed promoter 79440 79547 . + . ID=CGI_10005870; scaffold41968 WUBlastX LINE_RTE-X 79440 79547 28 - . . scaffold41968 flankbed promoter 79568 79735 . + . ID=CGI_10005870; scaffold41968 WUBlastX LINE_RTE-X 79568 79735 32 - . . scaffold41970 flankbed promoter 42353 42358 . - . ID=CGI_10005882; scaffold41970 TRF Tandem_Repeat 42353 42913 368 + . . scaffold41974 flankbed promoter 83192 83255 . - . ID=CGI_10005905; scaffold41974 TRF Tandem_Repeat 83192 83255 128 + . . scaffold41974 flankbed promoter 128121 128208 . - . ID=CGI_10005907; scaffold41974 TRF Tandem_Repeat 128121 128975 1151 + . . scaffold41982 flankbed promoter 51221 51864 . + . ID=CGI_10005971; scaffold41982 TRF Tandem_Repeat 51125 51864 912 + . . scaffold41988 flankbed promoter 47607 47655 . + . ID=CGI_10005896; scaffold41988 TRF Tandem_Repeat 47607 47655 89 + . . scaffold41998 flankbed promoter 6394 6418 . - . ID=CGI_10005908; scaffold41998 TRF Tandem_Repeat 6394 6418 50 + . . scaffold41998 flankbed promoter 10841 11033 . - . ID=CGI_10005910; scaffold41998 TRF Tandem_Repeat 10841 11033 121 + . . scaffold41998 flankbed promoter 11021 11424 . - . ID=CGI_10005910; scaffold41998 TRF Tandem_Repeat 11021 11424 388 + . . scaffold42 flankbed promoter 7555 7653 . + . ID=CGI_10018904; scaffold42 WUBlastX LTR_Gypsy 7555 7653 21 + . . scaffold42 flankbed promoter 83740 83777 . - . ID=CGI_10018905; scaffold42 TRF Tandem_Repeat 83740 83777 76 + . . scaffold42 flankbed promoter 204167 204225 . + . ID=CGI_10018912; scaffold42 TRF Tandem_Repeat 204167 204225 118 + . . scaffold42022 flankbed promoter 51304 51549 . - . ID=CGI_10006049; scaffold42022 WUBlastX LTR_Ngaro 51304 51549 75 - . . scaffold42022 flankbed promoter 51358 51564 . - . ID=CGI_10006049; scaffold42022 WUBlastX LTR_Ngaro 51358 51564 75 - . . scaffold42022 flankbed promoter 112336 112608 . + . ID=CGI_10006052; scaffold42022 TRF Tandem_Repeat 111513 112608 1405 + . . scaffold42022 flankbed promoter 112871 112945 . + . ID=CGI_10006052; scaffold42022 WUBlastX DNA_TcMar-Pogo 112871 112945 36 + . . scaffold42022 flankbed promoter 113065 113163 . + . ID=CGI_10006052; scaffold42022 WUBlastX DNA_TcMar-Pogo 113065 113163 48 + . . scaffold42022 flankbed promoter 112898 113059 . + . ID=CGI_10006052; scaffold42022 WUBlastX DNA_TcMar-Tigge 112898 113059 38 + . . scaffold42022 flankbed promoter 113071 113187 . + . ID=CGI_10006052; scaffold42022 WUBlastX DNA_TcMar-Tigge 113071 113187 33 + . . scaffold42030 flankbed promoter 26437 26532 . + . ID=CGI_10006042; scaffold42030 TRF Tandem_Repeat 26437 26532 97 + . . scaffold42040 flankbed promoter 17454 17485 . + . ID=CGI_10006021; scaffold42040 TRF Tandem_Repeat 17454 17485 64 + . . scaffold42062 flankbed promoter 32399 32554 . - . ID=CGI_10006060; scaffold42062 TRF Tandem_Repeat 32399 32715 564 + . . scaffold42090 flankbed promoter 23444 23484 . + . ID=CGI_10006104; scaffold42090 TRF Tandem_Repeat 23444 23484 82 + . . scaffold42090 flankbed promoter 63732 64511 . - . ID=CGI_10006106; scaffold42090 TRF Tandem_Repeat 63732 64511 518 + . . scaffold42090 flankbed promoter 64113 64670 . - . ID=CGI_10006106; scaffold42090 TRF Tandem_Repeat 64113 68449 1072 + . . scaffold42090 flankbed promoter 64413 64670 . - . ID=CGI_10006106; scaffold42090 TRF Tandem_Repeat 64413 65548 459 + . . scaffold42090 flankbed promoter 64332 64670 . - . ID=CGI_10006106; scaffold42090 TRF Tandem_Repeat 64332 68542 1483 + . . scaffold42096 flankbed promoter 6038 6097 . + . ID=CGI_10006159; scaffold42096 TRF Tandem_Repeat 6038 6097 120 + . . scaffold42096 flankbed promoter 105776 105844 . + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_CR1 105776 105844 23 + . . scaffold42096 flankbed promoter 105698 105710 . + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_RTE-X 105183 105710 112 + . . scaffold42096 flankbed promoter 105698 105821 . + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_RTE-X 105249 105821 37 + . . scaffold42096 flankbed promoter 125318 125359 . + . ID=CGI_10006167; scaffold42096 TRF Tandem_Repeat 125318 125359 50 + . . scaffold42096 flankbed promoter 125366 125517 . + . ID=CGI_10006167; scaffold42096 TRF Tandem_Repeat 125366 125517 155 + . . scaffold42096 flankbed promoter 125403 125482 . + . ID=CGI_10006167; scaffold42096 TRF Tandem_Repeat 125403 125482 79 + . . scaffold421 flankbed promoter 264910 264970 . + . ID=CGI_10012159; scaffold421 TRF Tandem_Repeat 264910 264970 115 + . . scaffold42112 flankbed promoter 132648 132683 . - . ID=CGI_10006123; scaffold42112 TRF Tandem_Repeat 132648 132683 72 + . . scaffold42128 flankbed promoter 128071 128103 . + . ID=CGI_10006200; scaffold42128 TRF Tandem_Repeat 128071 128103 66 + . . scaffold42128 flankbed promoter 137897 137935 . + . ID=CGI_10006202; scaffold42128 TRF Tandem_Repeat 137897 137935 55 + . . scaffold42128 flankbed promoter 146887 146944 . - . ID=CGI_10006203; scaffold42128 TRF Tandem_Repeat 146887 146944 91 + . . scaffold42128 flankbed promoter 146888 146941 . - . ID=CGI_10006203; scaffold42128 TRF Tandem_Repeat 146888 146941 56 + . . scaffold42164 flankbed promoter 1671 1695 . - . ID=CGI_10006311; scaffold42164 TRF Tandem_Repeat 1671 1695 50 + . . scaffold42164 flankbed promoter 5071 5095 . + . ID=CGI_10006312; scaffold42164 TRF Tandem_Repeat 5071 5095 50 + . . scaffold42164 flankbed promoter 144548 144601 . - . ID=CGI_10006325; scaffold42164 TRF Tandem_Repeat 144548 144601 72 + . . scaffold42184 flankbed promoter 103087 103677 . - . ID=CGI_10006331; scaffold42184 TRF Tandem_Repeat 103087 103677 749 + . . scaffold42198 flankbed promoter 65206 65262 . + . ID=CGI_10006393; scaffold42198 WUBlastX LINE_RTE-BovB 65206 65490 27 + . . scaffold422 flankbed promoter 133650 134622 . - . ID=CGI_10018795; scaffold422 TRF Tandem_Repeat 133650 135105 1510 + . . scaffold422 flankbed promoter 159345 159372 . + . ID=CGI_10018796; scaffold422 TRF Tandem_Repeat 159345 159372 56 + . . scaffold422 flankbed promoter 172147 172191 . - . ID=CGI_10018797; scaffold422 TRF Tandem_Repeat 172147 172191 90 + . . scaffold422 flankbed promoter 338370 338407 . - . ID=CGI_10018808; scaffold422 TRF Tandem_Repeat 338370 338407 60 + . . scaffold42210 flankbed promoter 97048 97398 . + . ID=CGI_10006389; scaffold42210 TRF Tandem_Repeat 97048 97398 435 + . . scaffold42214 flankbed promoter 94787 95507 . + . ID=CGI_10006414; scaffold42214 TRF Tandem_Repeat 94095 95507 454 + . . scaffold42214 flankbed promoter 94787 95539 . + . ID=CGI_10006414; scaffold42214 TRF Tandem_Repeat 94133 95539 670 + . . scaffold42214 flankbed promoter 94787 95077 . + . ID=CGI_10006414; scaffold42214 TRF Tandem_Repeat 94133 95077 532 + . . scaffold42214 flankbed promoter 94787 95488 . + . ID=CGI_10006414; scaffold42214 TRF Tandem_Repeat 94109 95488 580 + . . scaffold42214 flankbed promoter 94787 95358 . + . ID=CGI_10006414; scaffold42214 TRF Tandem_Repeat 94527 95358 511 + . . scaffold42214 flankbed promoter 118081 118122 . - . ID=CGI_10006417; scaffold42214 TRF Tandem_Repeat 118081 118122 84 + . . scaffold42214 flankbed promoter 130919 130961 . + . ID=CGI_10006419; scaffold42214 TRF Tandem_Repeat 130919 130961 77 + . . scaffold42226 flankbed promoter 44503 44728 . - . ID=CGI_10006360; scaffold42226 TRF Tandem_Repeat 44503 44728 389 + . . scaffold42226 flankbed promoter 98597 98727 . + . ID=CGI_10006363; scaffold42226 TRF Tandem_Repeat 98597 98727 244 + . . scaffold42226 flankbed promoter 106456 106493 . + . ID=CGI_10006364; scaffold42226 TRF Tandem_Repeat 106456 106493 51 + . . scaffold42236 flankbed promoter 32269 32412 . + . ID=CGI_10006399; scaffold42236 TRF Tandem_Repeat 32269 32412 53 + . . scaffold42236 flankbed promoter 32291 32413 . + . ID=CGI_10006399; scaffold42236 TRF Tandem_Repeat 32291 32413 108 + . . scaffold42236 flankbed promoter 60153 60218 . + . ID=CGI_10006402; scaffold42236 TRF Tandem_Repeat 60153 60218 123 + . . scaffold42252 flankbed promoter 137799 137869 . + . ID=CGI_10006471; scaffold42252 TRF Tandem_Repeat 137799 137869 142 + . . scaffold42268 flankbed promoter 88880 89707 . - . ID=CGI_10006562; scaffold42268 WUBlastX DNA_IS4EU 88880 89707 43 - . . scaffold42268 flankbed promoter 88865 89437 . - . ID=CGI_10006562; scaffold42268 WUBlastX DNA_IS4EU 88865 89437 79 - . . scaffold42274 flankbed promoter 20359 20412 . - . ID=CGI_10006510; scaffold42274 TRF Tandem_Repeat 20359 20412 108 + . . scaffold42302 flankbed promoter 39965 40162 . - . ID=CGI_10006567; scaffold42302 WUBlastX DNA_PiggyBac 39965 40162 26 - . . scaffold42302 flankbed promoter 122798 122835 . + . ID=CGI_10006573; scaffold42302 TRF Tandem_Repeat 122798 122835 76 + . . scaffold42326 flankbed promoter 105438 105495 . + . ID=CGI_10006697; scaffold42326 TRF Tandem_Repeat 105438 105495 98 + . . scaffold42326 flankbed promoter 105630 105668 . + . ID=CGI_10006697; scaffold42326 TRF Tandem_Repeat 105630 105668 78 + . . scaffold42328 flankbed promoter 37982 38023 . + . ID=CGI_10006550; scaffold42328 TRF Tandem_Repeat 37982 38023 84 + . . scaffold42328 flankbed promoter 51099 51167 . - . ID=CGI_10006551; scaffold42328 TRF Tandem_Repeat 51099 51167 129 + . . scaffold42348 flankbed promoter 78776 78806 . - . ID=CGI_10006681; scaffold42348 TRF Tandem_Repeat 78776 78806 62 + . . scaffold42348 flankbed promoter 156651 156678 . - . ID=CGI_10006686; scaffold42348 TRF Tandem_Repeat 156651 156678 56 + . . scaffold42364 flankbed promoter 74217 74499 . - . ID=CGI_10006721; scaffold42364 WUBlastX LINE_L2 74217 75479 188 - . . scaffold42364 flankbed promoter 74166 74375 . - . ID=CGI_10006721; scaffold42364 WUBlastX LINE_L2 74166 74375 31 - . . scaffold42364 flankbed promoter 73859 74110 . - . ID=CGI_10006721; scaffold42364 WUBlastX LINE_CR1-L2 73859 74110 36 - . . scaffold42364 flankbed promoter 71835 71873 . + . ID=CGI_10006723; scaffold42364 TRF Tandem_Repeat 71835 71873 78 + . . scaffold42364 flankbed promoter 72030 72085 . + . ID=CGI_10006723; scaffold42364 TRF Tandem_Repeat 72030 72085 112 + . . scaffold42364 flankbed promoter 104202 104235 . - . ID=CGI_10006726; scaffold42364 TRF Tandem_Repeat 104202 104235 50 + . . scaffold42364 flankbed promoter 151391 151457 . - . ID=CGI_10006728; scaffold42364 TRF Tandem_Repeat 151391 151457 57 + . . scaffold42364 flankbed promoter 151397 151446 . - . ID=CGI_10006728; scaffold42364 TRF Tandem_Repeat 151397 151446 64 + . . scaffold42366 flankbed promoter 24462 24502 . + . ID=CGI_10006699; scaffold42366 TRF Tandem_Repeat 24462 24502 82 + . . scaffold42366 flankbed promoter 99672 99729 . + . ID=CGI_10006702; scaffold42366 TRF Tandem_Repeat 99672 99729 75 + . . scaffold42392 flankbed promoter 87065 87107 . + . ID=CGI_10006783; scaffold42392 TRF Tandem_Repeat 87065 87107 86 + . . scaffold42392 flankbed promoter 87175 87229 . + . ID=CGI_10006783; scaffold42392 TRF Tandem_Repeat 87175 87229 110 + . . scaffold424 flankbed promoter 64571 64606 . - . ID=CGI_10014352; scaffold424 WUBlastX LTR_Gypsy 64445 64606 24 - . . scaffold424 flankbed promoter 65069 65212 . - . ID=CGI_10014352; scaffold424 WUBlastX LTR_Gypsy 65069 65212 62 - . . scaffold424 flankbed promoter 65317 65403 . - . ID=CGI_10014352; scaffold424 WUBlastX LTR_Gypsy 65317 65403 32 - . . scaffold424 flankbed promoter 65069 65290 . - . ID=CGI_10014352; scaffold424 WUBlastX LTR_Gypsy 65069 65290 40 - . . scaffold424 flankbed promoter 99432 99594 . - . ID=CGI_10014353; scaffold424 TRF Tandem_Repeat 99432 100519 1315 + . . scaffold424 flankbed promoter 166197 166240 . - . ID=CGI_10014357; scaffold424 TRF Tandem_Repeat 166197 166240 88 + . . scaffold424 flankbed promoter 250434 250480 . + . ID=CGI_10014364; scaffold424 TRF Tandem_Repeat 250434 250480 87 + . . scaffold424 flankbed promoter 250534 250601 . + . ID=CGI_10014364; scaffold424 TRF Tandem_Repeat 250534 250601 129 + . . scaffold42408 flankbed promoter 25400 25457 . - . ID=CGI_10006749; scaffold42408 TRF Tandem_Repeat 25400 25457 116 + . . scaffold42408 flankbed promoter 25522 25577 . - . ID=CGI_10006749; scaffold42408 TRF Tandem_Repeat 25522 25577 112 + . . scaffold42408 flankbed promoter 115909 116012 . - . ID=CGI_10006751; scaffold42408 WUBlastX RC_Helitron 115909 116046 42 - . . scaffold42408 flankbed promoter 115909 116046 . - . ID=CGI_10006752; scaffold42408 WUBlastX RC_Helitron 115909 116046 42 - . . scaffold42408 flankbed promoter 116084 116636 . - . ID=CGI_10006752; scaffold42408 WUBlastX RC_Helitron 116084 117067 103 - . . scaffold42422 flankbed promoter 2646 2682 . + . ID=CGI_10006847; scaffold42422 TRF Tandem_Repeat 2646 2682 74 + . . scaffold42422 flankbed promoter 114265 114379 . + . ID=CGI_10006854; scaffold42422 TRF Tandem_Repeat 114265 114379 76 + . . scaffold42448 flankbed promoter 38742 38772 . + . ID=CGI_10006877; scaffold42448 TRF Tandem_Repeat 38742 38772 53 + . . scaffold42448 flankbed promoter 38741 38776 . + . ID=CGI_10006877; scaffold42448 TRF Tandem_Repeat 38741 38776 54 + . . scaffold42448 flankbed promoter 134832 134929 . + . ID=CGI_10006886; scaffold42448 TRF Tandem_Repeat 134463 134929 727 + . . scaffold42466 flankbed promoter 73117 73582 . - . ID=CGI_10006937; scaffold42466 TRF Tandem_Repeat 73117 73582 785 + . . scaffold42486 flankbed promoter 2061 2189 . + . ID=CGI_10006974; scaffold42486 TRF Tandem_Repeat 1979 2189 181 + . . scaffold42486 flankbed promoter 99164 99299 . - . ID=CGI_10006979; scaffold42486 TRF Tandem_Repeat 99164 99299 154 + . . scaffold425 flankbed promoter 145208 145232 . - . ID=CGI_10025979; scaffold425 TRF Tandem_Repeat 145208 145232 50 + . . scaffold425 flankbed promoter 144449 144703 . - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 144020 144703 173 - . . scaffold425 flankbed promoter 144449 144937 . - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 144023 144937 160 - . . scaffold425 flankbed promoter 220277 220342 . - . ID=CGI_10025981; scaffold425 WUBlastX DNA_TcMar-Fot1 219878 220342 90 - . . scaffold425 flankbed promoter 283359 283384 . - . ID=CGI_10025982; scaffold425 TRF Tandem_Repeat 283359 283410 104 + . . scaffold425 flankbed promoter 718323 718773 . - . ID=CGI_10025987; scaffold425 TRF Tandem_Repeat 718323 718773 134 + . . scaffold425 flankbed promoter 718250 718821 . - . ID=CGI_10025987; scaffold425 TRF Tandem_Repeat 718250 718821 793 + . . scaffold425 flankbed promoter 767860 768069 . - . ID=CGI_10025990; scaffold425 WUBlastX LINE_L1-Tx1 767860 768069 92 - . . scaffold425 flankbed promoter 796397 796457 . + . ID=CGI_10025995; scaffold425 TRF Tandem_Repeat 796397 796457 122 + . . scaffold425 flankbed promoter 891755 891792 . - . ID=CGI_10026001; scaffold425 TRF Tandem_Repeat 891755 891792 76 + . . scaffold425 flankbed promoter 942183 942271 . - . ID=CGI_10026006; scaffold425 TRF Tandem_Repeat 942183 942271 137 + . . scaffold425 flankbed promoter 942318 942411 . - . ID=CGI_10026006; scaffold425 TRF Tandem_Repeat 942318 942411 125 + . . scaffold425 flankbed promoter 942988 943093 . - . ID=CGI_10026006; scaffold425 TRF Tandem_Repeat 942988 943235 148 + . . scaffold425 flankbed promoter 943059 943093 . - . ID=CGI_10026006; scaffold425 TRF Tandem_Repeat 943059 943205 149 + . . scaffold425 flankbed promoter 1069688 1069855 . + . ID=CGI_10026017; scaffold425 TRF Tandem_Repeat 1068968 1069855 1145 + . . scaffold425 flankbed promoter 1069688 1070109 . + . ID=CGI_10026017; scaffold425 TRF Tandem_Repeat 1068968 1070109 1390 + . . scaffold425 flankbed promoter 1069856 1070109 . + . ID=CGI_10026017; scaffold425 TRF Tandem_Repeat 1069856 1070109 343 + . . scaffold42530 flankbed promoter 26152 26199 . + . ID=CGI_10007159; scaffold42530 TRF Tandem_Repeat 26152 26199 96 + . . scaffold42530 flankbed promoter 119502 119522 . + . ID=CGI_10007164; scaffold42530 TRF Tandem_Repeat 119415 119522 189 + . . scaffold42556 flankbed promoter 98030 98452 . - . ID=CGI_10007193; scaffold42556 WUBlastX DNA_hAT 98030 98758 68 + . . scaffold42556 flankbed promoter 98030 98758 . + . ID=CGI_10007195; scaffold42556 WUBlastX DNA_hAT 98030 98758 68 + . . scaffold42558 flankbed promoter 30585 30625 . + . ID=CGI_10007217; scaffold42558 TRF Tandem_Repeat 30585 30625 82 + . . scaffold42568 flankbed promoter 9351 9605 . + . ID=CGI_10007264; scaffold42568 WUBlastX LINE_RTE-BovB 9351 9605 166 - . . scaffold42568 flankbed promoter 9087 9548 . + . ID=CGI_10007264; scaffold42568 WUBlastX LINE_RTE-BovB 9087 9548 101 - . . scaffold42568 flankbed promoter 9213 9596 . + . ID=CGI_10007264; scaffold42568 WUBlastX LINE_RTE-BovB 9213 9596 109 - . . scaffold42568 flankbed promoter 110288 110340 . + . ID=CGI_10007268; scaffold42568 TRF Tandem_Repeat 110288 110340 56 + . . scaffold42584 flankbed promoter 43600 43635 . + . ID=CGI_10007305; scaffold42584 TRF Tandem_Repeat 43600 43635 72 + . . scaffold42584 flankbed promoter 44380 44481 . + . ID=CGI_10007305; scaffold42584 TRF Tandem_Repeat 44380 44481 141 + . . scaffold42592 flankbed promoter 142502 142593 . + . ID=CGI_10007262; scaffold42592 TRF Tandem_Repeat 142502 142593 121 + . . scaffold42596 flankbed promoter 30673 30840 . + . ID=CGI_10007273; scaffold42596 WUBlastX LTR_Pao 30673 30840 46 + . . scaffold42598 flankbed promoter 133153 133162 . - . ID=CGI_10007336; scaffold42598 TRF Tandem_Repeat 133153 133243 103 + . . scaffold426 flankbed promoter 107818 107858 . + . ID=CGI_10006152; scaffold426 TRF Tandem_Repeat 107818 107858 82 + . . scaffold42604 flankbed promoter 68354 68429 . - . ID=CGI_10007313; scaffold42604 TRF Tandem_Repeat 68354 68429 80 + . . scaffold42604 flankbed promoter 176431 176716 . - . ID=CGI_10007315; scaffold42604 WUBlastX LINE_Penelope 176431 176718 44 - . . scaffold42604 flankbed promoter 176455 176688 . - . ID=CGI_10007315; scaffold42604 WUBlastX LINE_Penelope 176455 176688 128 - . . scaffold42640 flankbed promoter 20282 20321 . + . ID=CGI_10007372; scaffold42640 TRF Tandem_Repeat 20282 20321 71 + . . scaffold42640 flankbed promoter 49746 49799 . - . ID=CGI_10007374; scaffold42640 TRF Tandem_Repeat 49746 49799 108 + . . scaffold42640 flankbed promoter 104439 104491 . + . ID=CGI_10007378; scaffold42640 TRF Tandem_Repeat 104439 104491 52 + . . scaffold42648 flankbed promoter 51984 52041 . - . ID=CGI_10007386; scaffold42648 TRF Tandem_Repeat 51984 52041 116 + . . scaffold42648 flankbed promoter 114127 114477 . - . ID=CGI_10007391; scaffold42648 WUBlastX DNA_Harbinger 114025 114477 233 - . . scaffold42648 flankbed promoter 114875 115048 . - . ID=CGI_10007391; scaffold42648 WUBlastX DNA_Harbinger 114875 115048 107 - . . scaffold42648 flankbed promoter 114842 115054 . - . ID=CGI_10007391; scaffold42648 WUBlastX DNA_Harbinger 114842 115054 28 - . . scaffold42648 flankbed promoter 138012 138056 . - . ID=CGI_10007393; scaffold42648 TRF Tandem_Repeat 138012 138056 56 + . . scaffold42648 flankbed promoter 158067 158199 . + . ID=CGI_10007394; scaffold42648 TRF Tandem_Repeat 158067 158199 169 + . . scaffold42648 flankbed promoter 175734 175774 . - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Gypsy 175734 176678 353 - . . scaffold42648 flankbed promoter 175437 175757 . - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Gypsy 175437 175757 46 - . . scaffold42648 flankbed promoter 175500 175706 . - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Gypsy 175500 175706 69 - . . scaffold42648 flankbed promoter 175563 175774 . - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Gypsy-Cigr 175563 176684 327 - . . scaffold42656 flankbed promoter 172547 172588 . + . ID=CGI_10007420; scaffold42656 TRF Tandem_Repeat 172547 172588 59 + . . scaffold42662 flankbed promoter 132597 132646 . - . ID=CGI_10007460; scaffold42662 TRF Tandem_Repeat 132597 132646 100 + . . scaffold42662 flankbed promoter 165434 165511 . + . ID=CGI_10007463; scaffold42662 TRF Tandem_Repeat 165434 165511 129 + . . scaffold42662 flankbed promoter 165660 165832 . + . ID=CGI_10007463; scaffold42662 TRF Tandem_Repeat 165660 165832 269 + . . scaffold42704 flankbed promoter 15075 15118 . + . ID=CGI_10007536; scaffold42704 TRF Tandem_Repeat 15075 15118 88 + . . scaffold42726 flankbed promoter 107910 107970 . - . ID=CGI_10007569; scaffold42726 TRF Tandem_Repeat 107910 107970 113 + . . scaffold42754 flankbed promoter 122203 122557 . + . ID=CGI_10007678; scaffold42754 TRF Tandem_Repeat 122171 122557 578 + . . scaffold42754 flankbed promoter 161869 161894 . - . ID=CGI_10007679; scaffold42754 TRF Tandem_Repeat 161869 161894 52 + . . scaffold42754 flankbed promoter 160143 160421 . + . ID=CGI_10007680; scaffold42754 TRF Tandem_Repeat 160143 160421 513 + . . scaffold42754 flankbed promoter 160478 160665 . + . ID=CGI_10007680; scaffold42754 TRF Tandem_Repeat 160478 160665 286 + . . scaffold42766 flankbed promoter 6266 6602 . - . ID=CGI_10007660; scaffold42766 TRF Tandem_Repeat 6266 7173 1539 + . . scaffold42766 flankbed promoter 136710 136735 . + . ID=CGI_10007664; scaffold42766 TRF Tandem_Repeat 136710 136735 52 + . . scaffold42766 flankbed promoter 174253 174337 . + . ID=CGI_10007667; scaffold42766 TRF Tandem_Repeat 174253 174337 88 + . . scaffold42770 flankbed promoter 53254 53296 . + . ID=CGI_10007689; scaffold42770 WUBlastX DNA_Harbinger 53254 53331 22 + . . scaffold42770 flankbed promoter 53294 53296 . + . ID=CGI_10007689; scaffold42770 WUBlastX DNA_Harbinger 53294 53908 24 + . . scaffold42776 flankbed promoter 15760 15816 . + . ID=CGI_10007705; scaffold42776 TRF Tandem_Repeat 15760 15816 78 + . . scaffold42776 flankbed promoter 134121 134151 . + . ID=CGI_10007713; scaffold42776 TRF Tandem_Repeat 134121 134151 53 + . . scaffold42784 flankbed promoter 47669 48193 . - . ID=CGI_10007730; scaffold42784 WUBlastX LTR_Gypsy 47669 48193 133 - . . scaffold42784 flankbed promoter 53577 53786 . + . ID=CGI_10007732; scaffold42784 WUBlastX LTR_Pao 53577 53786 26 + . . scaffold42784 flankbed promoter 53212 53546 . + . ID=CGI_10007732; scaffold42784 WUBlastX LTR_Pao 53037 53546 58 + . . scaffold42784 flankbed promoter 53212 53291 . + . ID=CGI_10007732; scaffold42784 WUBlastX LTR_Pao 52998 53291 132 + . . scaffold42784 flankbed promoter 158127 158194 . + . ID=CGI_10007743; scaffold42784 TRF Tandem_Repeat 158127 158194 136 + . . scaffold42784 flankbed promoter 183272 183296 . - . ID=CGI_10007745; scaffold42784 TRF Tandem_Repeat 183272 183296 50 + . . scaffold42790 flankbed promoter 30015 30271 . - . ID=CGI_10007716; scaffold42790 TRF Tandem_Repeat 30015 30455 571 + . . scaffold42790 flankbed promoter 188323 188934 . - . ID=CGI_10007719; scaffold42790 WUBlastX LINE_Penelope 188323 188934 94 + . . scaffold42790 flankbed promoter 188377 189039 . - . ID=CGI_10007719; scaffold42790 WUBlastX LINE_Penelope 188377 189039 86 + . . scaffold42794 flankbed promoter 37808 38365 . - . ID=CGI_10007694; scaffold42794 TRF Tandem_Repeat 37808 38860 1201 + . . scaffold42794 flankbed promoter 135487 135546 . + . ID=CGI_10007699; scaffold42794 WUBlastX LINE_RTE-X 135187 135546 134 + . . scaffold42836 flankbed promoter 57237 57499 . - . ID=CGI_10007856; scaffold42836 TRF Tandem_Repeat 57237 57499 327 + . . scaffold42836 flankbed promoter 72601 72631 . - . ID=CGI_10007858; scaffold42836 TRF Tandem_Repeat 72601 72669 138 + . . scaffold42850 flankbed promoter 97202 97293 . - . ID=CGI_10007925; scaffold42850 TRF Tandem_Repeat 97202 97293 62 + . . scaffold42850 flankbed promoter 97497 97541 . - . ID=CGI_10007925; scaffold42850 TRF Tandem_Repeat 97497 97560 56 + . . scaffold42850 flankbed promoter 187706 187744 . - . ID=CGI_10007931; scaffold42850 TRF Tandem_Repeat 187706 187744 51 + . . scaffold42850 flankbed promoter 187707 187744 . - . ID=CGI_10007931; scaffold42850 TRF Tandem_Repeat 187707 187744 67 + . . scaffold42850 flankbed promoter 187914 188194 . - . ID=CGI_10007931; scaffold42850 TRF Tandem_Repeat 187914 188775 1400 + . . scaffold42866 flankbed promoter 132239 132718 . + . ID=CGI_10007993; scaffold42866 TRF Tandem_Repeat 132061 132718 775 + . . scaffold42866 flankbed promoter 195698 195733 . - . ID=CGI_10007995; scaffold42866 TRF Tandem_Repeat 195698 195733 72 + . . scaffold42880 flankbed promoter 29523 29783 . - . ID=CGI_10007997; scaffold42880 WUBlastX LTR_Ngaro 29340 29783 219 - . . scaffold42880 flankbed promoter 29523 29876 . - . ID=CGI_10007997; scaffold42880 WUBlastX LTR_Ngaro 29244 29876 61 - . . scaffold42880 flankbed promoter 29523 30206 . - . ID=CGI_10007997; scaffold42880 WUBlastX LTR_Ngaro 29364 30206 97 - . . scaffold42880 flankbed promoter 198288 198325 . - . ID=CGI_10007998; scaffold42880 TRF Tandem_Repeat 198288 198325 58 + . . scaffold42892 flankbed promoter 99339 99376 . + . ID=CGI_10008005; scaffold42892 TRF Tandem_Repeat 99339 99376 76 + . . scaffold42904 flankbed promoter 10155 10180 . - . ID=CGI_10008096; scaffold42904 TRF Tandem_Repeat 10155 10180 52 + . . scaffold42904 flankbed promoter 38914 38942 . + . ID=CGI_10008098; scaffold42904 TRF Tandem_Repeat 38914 38942 51 + . . scaffold42924 flankbed promoter 145586 145635 . - . ID=CGI_10008190; scaffold42924 TRF Tandem_Repeat 145586 145635 57 + . . scaffold42924 flankbed promoter 145585 145690 . - . ID=CGI_10008190; scaffold42924 TRF Tandem_Repeat 145585 145690 90 + . . scaffold42946 flankbed promoter 16139 16171 . + . ID=CGI_10008169; scaffold42946 TRF Tandem_Repeat 16139 16171 57 + . . scaffold42946 flankbed promoter 32473 32661 . + . ID=CGI_10008170; scaffold42946 WUBlastX DNA_TcMar-Tc1 32473 32661 30 - . . scaffold42946 flankbed promoter 32063 32245 . + . ID=CGI_10008170; scaffold42946 WUBlastX DNA_TcMar-Tc1 32063 32245 55 - . . scaffold42946 flankbed promoter 32473 32622 . + . ID=CGI_10008170; scaffold42946 WUBlastX DNA_TcMar-Tc1 32473 32622 44 - . . scaffold42946 flankbed promoter 32025 32230 . + . ID=CGI_10008170; scaffold42946 WUBlastX DNA_TcMar-Tc1 32006 32230 43 - . . scaffold42946 flankbed promoter 80684 80967 . + . ID=CGI_10008174; scaffold42946 WUBlastX LTR_Pao 80629 80967 177 - . . scaffold42946 flankbed promoter 80969 81043 . + . ID=CGI_10008174; scaffold42946 WUBlastX LTR_Pao 80969 81043 31 - . . scaffold42946 flankbed promoter 160202 160270 . + . ID=CGI_10008180; scaffold42946 WUBlastX LINE_RTE-X 160202 160270 49 - . . scaffold42946 flankbed promoter 159748 159882 . + . ID=CGI_10008180; scaffold42946 WUBlastX LINE_RTE-X 159703 159882 27 - . . scaffold42948 flankbed promoter 41713 41762 . + . ID=CGI_10008223; scaffold42948 TRF Tandem_Repeat 41713 41762 100 + . . scaffold42948 flankbed promoter 156165 156863 . + . ID=CGI_10008233; scaffold42948 WUBlastX LTR_Gypsy 156165 156863 51 - . . scaffold42948 flankbed promoter 156013 156656 . + . ID=CGI_10008233; scaffold42948 WUBlastX LTR_Gypsy 155739 156656 92 - . . scaffold42948 flankbed promoter 156013 156737 . + . ID=CGI_10008233; scaffold42948 WUBlastX LTR_Gypsy 155940 156737 395 - . . scaffold42994 flankbed promoter 5336 5440 . + . ID=CGI_10008312; scaffold42994 WUBlastX LINE_RTE-BovB 5336 5569 64 + . . scaffold42994 flankbed promoter 4966 5226 . + . ID=CGI_10008312; scaffold42994 WUBlastX LINE_RTE-BovB 4966 5226 71 + . . scaffold42994 flankbed promoter 5249 5440 . + . ID=CGI_10008312; scaffold42994 WUBlastX LINE_RTE-BovB 5249 5566 44 + . . scaffold42994 flankbed promoter 5405 5440 . + . ID=CGI_10008312; scaffold42994 WUBlastX LINE_RTE-BovB 5405 5572 69 + . . scaffold42994 flankbed promoter 182837 182986 . + . ID=CGI_10008329; scaffold42994 WUBlastX LTR_Gypsy 182837 182986 20 + . . scaffold42994 flankbed promoter 182078 182314 . + . ID=CGI_10008329; scaffold42994 WUBlastX LTR_Gypsy 182078 182314 133 + . . scaffold42994 flankbed promoter 182344 182619 . + . ID=CGI_10008329; scaffold42994 WUBlastX LTR_Gypsy 182344 182619 28 + . . scaffold42994 flankbed promoter 182072 182350 . + . ID=CGI_10008329; scaffold42994 WUBlastX LTR_Gypsy 182072 182350 114 + . . scaffold42994 flankbed promoter 182344 182511 . + . ID=CGI_10008329; scaffold42994 WUBlastX LTR_Gypsy 182344 182511 71 + . . scaffold43 flankbed promoter 134839 134868 . - . ID=CGI_10021342; scaffold43 WUBlastX DNA_Harbinger 134557 134868 106 - . . scaffold43 flankbed promoter 304752 304792 . - . ID=CGI_10021352; scaffold43 TRF Tandem_Repeat 304752 304792 55 + . . scaffold43 flankbed promoter 357766 357851 . - . ID=CGI_10021353; scaffold43 TRF Tandem_Repeat 357766 357851 100 + . . scaffold43 flankbed promoter 379057 379185 . - . ID=CGI_10021354; scaffold43 WUBlastX LTR_Gypsy 378907 379185 32 + . . scaffold43 flankbed promoter 583417 583468 . - . ID=CGI_10021361; scaffold43 TRF Tandem_Repeat 583417 583468 104 + . . scaffold43 flankbed promoter 668621 668654 . + . ID=CGI_10021366; scaffold43 TRF Tandem_Repeat 668621 668654 68 + . . scaffold43008 flankbed promoter 1147 1730 . + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 1041 1730 57 + . . scaffold43008 flankbed promoter 1147 1610 . + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 1041 1610 89 + . . scaffold43008 flankbed promoter 33812 34570 . - . ID=CGI_10008458; scaffold43008 WUBlastX DNA_Kolobok-Hyd 33794 34570 53 - . . scaffold43008 flankbed promoter 51715 51723 . - . ID=CGI_10008460; scaffold43008 WUBlastX DNA_Sola 51598 51723 39 - . . scaffold43008 flankbed promoter 88430 88806 . - . ID=CGI_10008462; scaffold43008 TRF Tandem_Repeat 88430 89287 923 + . . scaffold43024 flankbed promoter 58850 59000 . - . ID=CGI_10008551; scaffold43024 WUBlastX DNA_Merlin 58850 59722 406 + . . scaffold43028 flankbed promoter 109324 109557 . - . ID=CGI_10008506; scaffold43028 TRF Tandem_Repeat 109324 110067 668 + . . scaffold43028 flankbed promoter 109407 110067 . + . ID=CGI_10008507; scaffold43028 TRF Tandem_Repeat 109324 110067 668 + . . scaffold43036 flankbed promoter 27153 27182 . - . ID=CGI_10008493; scaffold43036 WUBlastX LTR_Pao 27048 27182 104 - . . scaffold43038 flankbed promoter 119642 119692 . - . ID=CGI_10008446; scaffold43038 TRF Tandem_Repeat 119642 119692 102 + . . scaffold43038 flankbed promoter 120631 120689 . + . ID=CGI_10008447; scaffold43038 TRF Tandem_Repeat 120631 120689 118 + . . scaffold43038 flankbed promoter 207900 208156 . - . ID=CGI_10008450; scaffold43038 WUBlastX LINE_L1-Tx1 207900 209123 185 - . . scaffold43064 flankbed promoter 1647 1697 . + . ID=CGI_10008625; scaffold43064 TRF Tandem_Repeat 1647 1697 102 + . . scaffold43064 flankbed promoter 33944 33979 . - . ID=CGI_10008626; scaffold43064 TRF Tandem_Repeat 33944 33979 72 + . . scaffold43064 flankbed promoter 164128 164702 . + . ID=CGI_10008633; scaffold43064 TRF Tandem_Repeat 163967 164702 865 + . . scaffold43066 flankbed promoter 163460 163513 . - . ID=CGI_10008681; scaffold43066 TRF Tandem_Repeat 163460 163513 108 + . . scaffold43072 flankbed promoter 112632 112985 . - . ID=CGI_10008699; scaffold43072 WUBlastX LINE_RTE-X 112632 112985 22 - . . scaffold43072 flankbed promoter 112752 113042 . - . ID=CGI_10008699; scaffold43072 WUBlastX LINE_RTE-X 112752 113069 82 - . . scaffold43072 flankbed promoter 192671 192720 . - . ID=CGI_10008706; scaffold43072 TRF Tandem_Repeat 192671 192720 100 + . . scaffold43072 flankbed promoter 192671 192720 . + . ID=CGI_10008707; scaffold43072 TRF Tandem_Repeat 192671 192720 100 + . . scaffold43076 flankbed promoter 124292 124378 . + . ID=CGI_10008765; scaffold43076 WUBlastX DNA_IS4EU 124292 124456 56 + . . scaffold43076 flankbed promoter 166087 166450 . + . ID=CGI_10008768; scaffold43076 WUBlastX LTR_Gypsy 165869 166450 334 + . . scaffold43084 flankbed promoter 126505 126606 . + . ID=CGI_10008568; scaffold43084 TRF Tandem_Repeat 126505 126606 195 + . . scaffold43108 flankbed promoter 75882 76015 . + . ID=CGI_10008839; scaffold43108 TRF Tandem_Repeat 75882 76015 159 + . . scaffold43108 flankbed promoter 129408 129456 . + . ID=CGI_10008841; scaffold43108 TRF Tandem_Repeat 129408 129456 98 + . . scaffold43108 flankbed promoter 129702 129753 . + . ID=CGI_10008841; scaffold43108 TRF Tandem_Repeat 129702 129753 95 + . . scaffold43116 flankbed promoter 107332 107356 . - . ID=CGI_10008812; scaffold43116 TRF Tandem_Repeat 107332 110531 4417 + . . scaffold43116 flankbed promoter 107332 107356 . - . ID=CGI_10008812; scaffold43116 TRF Tandem_Repeat 107332 110531 4374 + . . scaffold43116 flankbed promoter 176222 176247 . - . ID=CGI_10008817; scaffold43116 TRF Tandem_Repeat 176222 176247 52 + . . scaffold43116 flankbed promoter 210452 210466 . - . ID=CGI_10008821; scaffold43116 WUBlastX DNA_IS4EU 210452 211246 83 + . . scaffold43122 flankbed promoter 28341 28369 . - . ID=CGI_10008930; scaffold43122 TRF Tandem_Repeat 28341 28369 58 + . . scaffold43122 flankbed promoter 28341 28369 . + . ID=CGI_10008931; scaffold43122 TRF Tandem_Repeat 28341 28369 58 + . . scaffold43130 flankbed promoter 44232 44480 . - . ID=CGI_10008959; scaffold43130 WUBlastX DNA_TcMar-Tc1 44232 44480 39 + . . scaffold43130 flankbed promoter 173778 173812 . + . ID=CGI_10008965; scaffold43130 TRF Tandem_Repeat 173778 173812 70 + . . scaffold43130 flankbed promoter 211217 211228 . - . ID=CGI_10008966; scaffold43130 WUBlastX LINE_RTE-X 211217 211366 65 - . . scaffold43130 flankbed promoter 211217 211228 . - . ID=CGI_10008966; scaffold43130 WUBlastX LINE_RTE-X 211217 211435 57 - . . scaffold43136 flankbed promoter 7880 8155 . - . ID=CGI_10009000; scaffold43136 WUBlastX LTR_Gypsy 7880 8155 44 + . . scaffold43136 flankbed promoter 7880 8071 . - . ID=CGI_10009000; scaffold43136 WUBlastX LTR_Gypsy-Cigr 7880 8071 98 + . . scaffold43136 flankbed promoter 7636 8074 . - . ID=CGI_10009000; scaffold43136 WUBlastX LTR_Gypsy 7436 8074 71 + . . scaffold43136 flankbed promoter 7880 8113 . - . ID=CGI_10009000; scaffold43136 WUBlastX LTR_Gypsy 7880 8113 65 + . . scaffold43136 flankbed promoter 33517 34131 . - . ID=CGI_10009001; scaffold43136 WUBlastX RC_Helitron 33517 36846 578 - . . scaffold43136 flankbed promoter 160156 160194 . + . ID=CGI_10009007; scaffold43136 TRF Tandem_Repeat 160156 160194 78 + . . scaffold43136 flankbed promoter 213208 213251 . - . ID=CGI_10009009; scaffold43136 TRF Tandem_Repeat 213208 213251 70 + . . scaffold43150 flankbed promoter 103616 103654 . + . ID=CGI_10009033; scaffold43150 TRF Tandem_Repeat 103616 103654 53 + . . scaffold43150 flankbed promoter 103613 103674 . + . ID=CGI_10009033; scaffold43150 TRF Tandem_Repeat 103613 103674 67 + . . scaffold43150 flankbed promoter 115982 116061 . - . ID=CGI_10009034; scaffold43150 TRF Tandem_Repeat 115982 116061 160 + . . scaffold43150 flankbed promoter 116172 116212 . - . ID=CGI_10009034; scaffold43150 TRF Tandem_Repeat 116172 116212 57 + . . scaffold43150 flankbed promoter 139168 139369 . + . ID=CGI_10009036; scaffold43150 TRF Tandem_Repeat 139168 139369 113 + . . scaffold43150 flankbed promoter 139247 139449 . + . ID=CGI_10009036; scaffold43150 TRF Tandem_Repeat 139247 139449 271 + . . scaffold43150 flankbed promoter 179938 180050 . - . ID=CGI_10009040; scaffold43150 TRF Tandem_Repeat 179938 180050 75 + . . scaffold43170 flankbed promoter 49538 49678 . - . ID=CGI_10009100; scaffold43170 TRF Tandem_Repeat 49538 49678 165 + . . scaffold43170 flankbed promoter 49699 49765 . - . ID=CGI_10009100; scaffold43170 TRF Tandem_Repeat 49699 49765 89 + . . scaffold43170 flankbed promoter 118629 118718 . - . ID=CGI_10009102; scaffold43170 WUBlastX DNA_Zator 116499 118718 922 - . . scaffold43182 flankbed promoter 73806 73836 . - . ID=CGI_10009198; scaffold43182 TRF Tandem_Repeat 73806 73836 62 + . . scaffold43182 flankbed promoter 129968 130206 . - . ID=CGI_10009201; scaffold43182 WUBlastX LTR_Gypsy 129968 130834 99 + . . scaffold43182 flankbed promoter 129396 129827 . - . ID=CGI_10009201; scaffold43182 WUBlastX LTR_Gypsy 129396 129827 81 + . . scaffold43182 flankbed promoter 129552 129878 . - . ID=CGI_10009201; scaffold43182 WUBlastX LTR_Gypsy 129552 129878 40 + . . scaffold43182 flankbed promoter 129381 129950 . - . ID=CGI_10009201; scaffold43182 WUBlastX LTR_Gypsy 129381 129950 36 + . . scaffold43182 flankbed promoter 189018 189112 . + . ID=CGI_10009205; scaffold43182 WUBlastX DNA_En-Spm 187865 189112 570 + . . scaffold43182 flankbed promoter 189018 189517 . + . ID=CGI_10009205; scaffold43182 WUBlastX DNA_En-Spm 187889 189517 418 + . . scaffold43184 flankbed promoter 149917 149978 . - . ID=CGI_10009116; scaffold43184 TRF Tandem_Repeat 149917 149978 72 + . . scaffold43194 flankbed promoter 74427 74448 . - . ID=CGI_10009252; scaffold43194 TRF Tandem_Repeat 74427 74452 52 + . . scaffold432 flankbed promoter 96344 96395 . + . ID=CGI_10023081; scaffold432 TRF Tandem_Repeat 96344 96395 104 + . . scaffold432 flankbed promoter 205663 205694 . - . ID=CGI_10023087; scaffold432 TRF Tandem_Repeat 205663 205694 64 + . . scaffold432 flankbed promoter 205694 205728 . - . ID=CGI_10023087; scaffold432 TRF Tandem_Repeat 205694 205728 70 + . . scaffold432 flankbed promoter 400844 400886 . + . ID=CGI_10023103; scaffold432 TRF Tandem_Repeat 400844 400886 86 + . . scaffold432 flankbed promoter 746023 746494 . - . ID=CGI_10023121; scaffold432 WUBlastX LINE_RTE-X 746023 746625 315 + . . scaffold432 flankbed promoter 803211 803231 . - . ID=CGI_10023125; scaffold432 TRF Tandem_Repeat 803211 803379 266 + . . scaffold43206 flankbed promoter 90052 90108 . + . ID=CGI_10009264; scaffold43206 TRF Tandem_Repeat 90052 90108 114 + . . scaffold43206 flankbed promoter 175384 175404 . + . ID=CGI_10009273; scaffold43206 TRF Tandem_Repeat 175321 175404 87 + . . scaffold43206 flankbed promoter 175384 175403 . + . ID=CGI_10009273; scaffold43206 TRF Tandem_Repeat 175333 175403 70 + . . scaffold43206 flankbed promoter 175384 175404 . + . ID=CGI_10009273; scaffold43206 TRF Tandem_Repeat 175329 175404 89 + . . scaffold43206 flankbed promoter 188080 188116 . + . ID=CGI_10009274; scaffold43206 TRF Tandem_Repeat 188080 188116 74 + . . scaffold43208 flankbed promoter 94839 94893 . + . ID=CGI_10009357; scaffold43208 TRF Tandem_Repeat 94839 94893 60 + . . scaffold43210 flankbed promoter 155653 155689 . + . ID=CGI_10009447; scaffold43210 TRF Tandem_Repeat 155653 155689 74 + . . scaffold43240 flankbed promoter 142421 142573 . - . ID=CGI_10009589; scaffold43240 WUBlastX DNA_TcMar-Tc1 142421 142573 28 - . . scaffold43240 flankbed promoter 142508 142588 . - . ID=CGI_10009589; scaffold43240 WUBlastX DNA_TcMar-Tc1 142508 142588 23 - . . scaffold43240 flankbed promoter 142454 142567 . - . ID=CGI_10009589; scaffold43240 WUBlastX DNA_TcMar-Tc1 142454 142567 47 - . . scaffold43240 flankbed promoter 147279 148207 . - . ID=CGI_10009590; scaffold43240 TRF Tandem_Repeat 147279 149000 1950 + . . scaffold43240 flankbed promoter 147387 148207 . - . ID=CGI_10009590; scaffold43240 TRF Tandem_Repeat 147387 148997 994 + . . scaffold43240 flankbed promoter 154990 155279 . - . ID=CGI_10009591; scaffold43240 WUBlastX LINE_RTE-X 154990 155430 28 + . . scaffold43240 flankbed promoter 155158 155279 . - . ID=CGI_10009591; scaffold43240 WUBlastX LINE_RTE-X 155158 155427 57 + . . scaffold43242 flankbed promoter 31699 32037 . - . ID=CGI_10009545; scaffold43242 TRF Tandem_Repeat 31699 32037 237 + . . scaffold43242 flankbed promoter 31686 32046 . - . ID=CGI_10009545; scaffold43242 TRF Tandem_Repeat 31686 32046 555 + . . scaffold43242 flankbed promoter 32583 32684 . - . ID=CGI_10009545; scaffold43242 WUBlastX DNA_Kolobok 32583 32792 82 + . . scaffold43242 flankbed promoter 154541 154564 . + . ID=CGI_10009546; scaffold43242 WUBlastX DNA_TcMar-Tc2 154541 154789 51 + . . scaffold43242 flankbed promoter 154137 154523 . + . ID=CGI_10009546; scaffold43242 WUBlastX DNA_TcMar-Tc2 154137 154523 49 + . . scaffold43242 flankbed promoter 174364 174555 . + . ID=CGI_10009550; scaffold43242 WUBlastX LINE_RTE-X 174364 174555 43 - . . scaffold43242 flankbed promoter 174373 174729 . + . ID=CGI_10009550; scaffold43242 WUBlastX LINE_RTE-X 174373 174729 25 - . . scaffold43242 flankbed promoter 174250 174555 . + . ID=CGI_10009550; scaffold43242 WUBlastX LINE_RTE-X 174250 174555 26 - . . scaffold43242 flankbed promoter 174300 174371 . + . ID=CGI_10009550; scaffold43242 WUBlastX LINE_RTE-X 174300 174371 33 - . . scaffold43242 flankbed promoter 193103 193168 . + . ID=CGI_10009552; scaffold43242 TRF Tandem_Repeat 193103 193168 114 + . . scaffold43244 flankbed promoter 234892 235176 . - . ID=CGI_10009618; scaffold43244 WUBlastX RC_Helitron 234892 235176 106 - . . scaffold43258 flankbed promoter 133790 133924 . + . ID=CGI_10009634; scaffold43258 WUBlastX LTR_Ngaro 133790 133924 27 - . . scaffold43258 flankbed promoter 133740 133826 . + . ID=CGI_10009634; scaffold43258 WUBlastX LTR_Ngaro 133548 133826 132 - . . scaffold43258 flankbed promoter 198849 198891 . + . ID=CGI_10009635; scaffold43258 TRF Tandem_Repeat 198847 198891 54 + . . scaffold43258 flankbed promoter 199376 199410 . + . ID=CGI_10009635; scaffold43258 TRF Tandem_Repeat 199376 199410 70 + . . scaffold43258 flankbed promoter 199528 199574 . + . ID=CGI_10009635; scaffold43258 TRF Tandem_Repeat 199528 199574 58 + . . scaffold43272 flankbed promoter 115214 115474 . - . ID=CGI_10009668; scaffold43272 WUBlastX DNA_Kolobok 115214 115474 75 - . . scaffold43272 flankbed promoter 115075 115125 . - . ID=CGI_10009668; scaffold43272 WUBlastX DNA_Kolobok 114952 115125 61 - . . scaffold43272 flankbed promoter 115271 115468 . - . ID=CGI_10009668; scaffold43272 WUBlastX DNA_Kolobok 115271 115468 78 - . . scaffold43272 flankbed promoter 115647 115781 . - . ID=CGI_10009668; scaffold43272 WUBlastX DNA_Kolobok 115647 115781 81 - . . scaffold43272 flankbed promoter 115626 115754 . - . ID=CGI_10009668; scaffold43272 WUBlastX DNA_Kolobok 115626 115754 24 - . . scaffold43272 flankbed promoter 178705 178932 . - . ID=CGI_10009670; scaffold43272 WUBlastX LTR_Gypsy 178705 178932 71 - . . scaffold43278 flankbed promoter 116688 116730 . + . ID=CGI_10009622; scaffold43278 TRF Tandem_Repeat 116688 116730 50 + . . scaffold43278 flankbed promoter 116797 116985 . + . ID=CGI_10009622; scaffold43278 WUBlastX LINE_RTE-X 116797 116985 55 - . . scaffold43278 flankbed promoter 116776 117042 . + . ID=CGI_10009622; scaffold43278 WUBlastX LINE_RTE-X 116776 117042 46 - . . scaffold43278 flankbed promoter 168993 169112 . + . ID=CGI_10009623; scaffold43278 TRF Tandem_Repeat 168993 169112 136 + . . scaffold43280 flankbed promoter 1620 1937 . + . ID=CGI_10009652; scaffold43280 WUBlastX LTR_DIRS 1620 1937 33 - . . scaffold43280 flankbed promoter 1710 1982 . + . ID=CGI_10009652; scaffold43280 WUBlastX LTR_DIRS 1710 1982 24 - . . scaffold43280 flankbed promoter 29336 29470 . - . ID=CGI_10009653; scaffold43280 WUBlastX DNA_Sola 29195 29470 22 - . . scaffold43280 flankbed promoter 200227 200269 . - . ID=CGI_10009658; scaffold43280 TRF Tandem_Repeat 200227 200269 68 + . . scaffold43290 flankbed promoter 137020 137096 . - . ID=CGI_10009641; scaffold43290 TRF Tandem_Repeat 137020 137312 189 + . . scaffold43290 flankbed promoter 137018 137096 . - . ID=CGI_10009641; scaffold43290 TRF Tandem_Repeat 137018 137312 301 + . . scaffold43290 flankbed promoter 137041 137096 . - . ID=CGI_10009641; scaffold43290 TRF Tandem_Repeat 137041 137293 169 + . . scaffold43290 flankbed promoter 137018 137096 . - . ID=CGI_10009641; scaffold43290 TRF Tandem_Repeat 137018 137319 205 + . . scaffold43290 flankbed promoter 207248 207331 . + . ID=CGI_10009648; scaffold43290 TRF Tandem_Repeat 207248 207331 168 + . . scaffold43296 flankbed promoter 121611 121862 . - . ID=CGI_10009743; scaffold43296 WUBlastX LTR_ERV1 121521 121862 30 - . . scaffold43296 flankbed promoter 218738 218778 . - . ID=CGI_10009746; scaffold43296 TRF Tandem_Repeat 218738 218778 82 + . . scaffold433 flankbed promoter 15237 15284 . - . ID=CGI_10027043; scaffold433 TRF Tandem_Repeat 15237 15284 51 + . . scaffold433 flankbed promoter 81535 81588 . - . ID=CGI_10027050; scaffold433 TRF Tandem_Repeat 81535 81588 108 + . . scaffold433 flankbed promoter 114689 114781 . - . ID=CGI_10027054; scaffold433 TRF Tandem_Repeat 114689 114781 161 + . . scaffold433 flankbed promoter 125371 125400 . - . ID=CGI_10027056; scaffold433 WUBlastX LINE_CR1 125371 125478 49 - . . scaffold433 flankbed promoter 125338 125400 . - . ID=CGI_10027056; scaffold433 WUBlastX LINE_CR1-L2 125338 125487 40 - . . scaffold433 flankbed promoter 560005 560048 . + . ID=CGI_10027081; scaffold433 TRF Tandem_Repeat 560005 560048 88 + . . scaffold433 flankbed promoter 692882 692934 . - . ID=CGI_10027088; scaffold433 TRF Tandem_Repeat 692882 692934 106 + . . scaffold433 flankbed promoter 809817 809995 . + . ID=CGI_10027093; scaffold433 TRF Tandem_Repeat 809416 809995 677 + . . scaffold433 flankbed promoter 1133037 1133075 . - . ID=CGI_10027109; scaffold433 TRF Tandem_Repeat 1133037 1133075 78 + . . scaffold433 flankbed promoter 1143639 1143704 . - . ID=CGI_10027110; scaffold433 TRF Tandem_Repeat 1143639 1143704 116 + . . scaffold433 flankbed promoter 1184155 1184229 . - . ID=CGI_10027114; scaffold433 WUBlastX DNA_Kolobok-Hyd 1184155 1184229 26 + . . scaffold433 flankbed promoter 1202766 1202960 . - . ID=CGI_10027118; scaffold433 WUBlastX LTR_Gypsy 1202667 1202960 32 - . . scaffold433 flankbed promoter 1202913 1203212 . - . ID=CGI_10027118; scaffold433 WUBlastX LTR_Gypsy 1202913 1203212 75 - . . scaffold433 flankbed promoter 1202838 1203095 . - . ID=CGI_10027118; scaffold433 WUBlastX LTR_ERV1 1202838 1203095 38 - . . scaffold433 flankbed promoter 1203092 1203765 . - . ID=CGI_10027118; scaffold433 WUBlastX LTR_Gypsy 1203092 1203964 394 - . . scaffold43302 flankbed promoter 201529 201840 . + . ID=CGI_10009770; scaffold43302 WUBlastX LTR_Copia 201529 201840 54 + . . scaffold43302 flankbed promoter 201771 201840 . + . ID=CGI_10009771; scaffold43302 WUBlastX LTR_Copia 201529 201840 54 + . . scaffold43314 flankbed promoter 190715 190772 . + . ID=CGI_10009786; scaffold43314 TRF Tandem_Repeat 190715 190772 50 + . . scaffold43340 flankbed promoter 236319 236657 . - . ID=CGI_10009933; scaffold43340 WUBlastX LINE_RTE-X 236319 236657 67 - . . scaffold43344 flankbed promoter 71467 71505 . + . ID=CGI_10009834; scaffold43344 TRF Tandem_Repeat 71467 71505 69 + . . scaffold43344 flankbed promoter 191110 191547 . + . ID=CGI_10009842; scaffold43344 TRF Tandem_Repeat 191110 191547 432 + . . scaffold43344 flankbed promoter 191110 191603 . + . ID=CGI_10009842; scaffold43344 TRF Tandem_Repeat 191110 191603 425 + . . scaffold43358 flankbed promoter 219605 220018 . - . ID=CGI_10009980; scaffold43358 WUBlastX DNA_IS4EU 219389 220018 62 - . . scaffold43366 flankbed promoter 167861 167913 . - . ID=CGI_10009990; scaffold43366 TRF Tandem_Repeat 167861 167913 99 + . . scaffold43388 flankbed promoter 233969 234049 . - . ID=CGI_10010121; scaffold43388 TRF Tandem_Repeat 233969 234049 137 + . . scaffold43388 flankbed promoter 246753 246812 . - . ID=CGI_10010122; scaffold43388 TRF Tandem_Repeat 246753 246812 106 + . . scaffold43388 flankbed promoter 246754 246830 . - . ID=CGI_10010122; scaffold43388 TRF Tandem_Repeat 246754 246830 86 + . . scaffold43396 flankbed promoter 14558 14595 . + . ID=CGI_10010143; scaffold43396 TRF Tandem_Repeat 14558 14595 51 + . . scaffold43396 flankbed promoter 14679 14706 . + . ID=CGI_10010143; scaffold43396 TRF Tandem_Repeat 14679 15104 388 + . . scaffold43396 flankbed promoter 221078 221116 . - . ID=CGI_10010154; scaffold43396 TRF Tandem_Repeat 221078 221116 78 + . . scaffold43406 flankbed promoter 148831 148851 . + . ID=CGI_10010212; scaffold43406 WUBlastX LTR_ERV1 148354 148851 58 + . . scaffold43406 flankbed promoter 149440 149556 . + . ID=CGI_10010212; scaffold43406 WUBlastX LTR_ERVK 149440 149556 21 + . . scaffold43406 flankbed promoter 149299 149481 . + . ID=CGI_10010212; scaffold43406 WUBlastX LTR_ERV1 149299 149481 44 + . . scaffold43406 flankbed promoter 149305 149532 . + . ID=CGI_10010212; scaffold43406 WUBlastX LTR_ERV1 149305 149532 22 + . . scaffold43426 flankbed promoter 61400 61428 . - . ID=CGI_10010299; scaffold43426 TRF Tandem_Repeat 61400 61428 51 + . . scaffold43426 flankbed promoter 217863 217919 . + . ID=CGI_10010313; scaffold43426 TRF Tandem_Repeat 217863 217919 50 + . . scaffold43426 flankbed promoter 217861 217931 . + . ID=CGI_10010313; scaffold43426 TRF Tandem_Repeat 217861 217931 72 + . . scaffold43442 flankbed promoter 38455 38572 . + . ID=CGI_10010227; scaffold43442 TRF Tandem_Repeat 38455 38572 103 + . . scaffold43442 flankbed promoter 102490 102552 . - . ID=CGI_10010232; scaffold43442 TRF Tandem_Repeat 102490 102552 117 + . . scaffold43446 flankbed promoter 126759 127359 . + . ID=CGI_10010399; scaffold43446 WUBlastX LINE_L1-Tx1 126754 127359 186 + . . scaffold43494 flankbed promoter 131288 131338 . - . ID=CGI_10010566; scaffold43494 TRF Tandem_Repeat 131288 131338 102 + . . scaffold43500 flankbed promoter 55466 55509 . + . ID=CGI_10010613; scaffold43500 TRF Tandem_Repeat 55466 55509 79 + . . scaffold43500 flankbed promoter 139281 139718 . + . ID=CGI_10010618; scaffold43500 WUBlastX LINE_CR1 139281 139952 91 + . . scaffold43500 flankbed promoter 139281 139952 . + . ID=CGI_10010619; scaffold43500 WUBlastX LINE_CR1 139281 139952 91 + . . scaffold43520 flankbed promoter 54004 54093 . + . ID=CGI_10010712; scaffold43520 WUBlastX DNA_TcMar-Tc2 53218 54093 234 + . . scaffold43520 flankbed promoter 54004 54261 . + . ID=CGI_10010712; scaffold43520 WUBlastX DNA_TcMar-Tc2 53215 54261 219 + . . scaffold43520 flankbed promoter 151207 151235 . + . ID=CGI_10010719; scaffold43520 TRF Tandem_Repeat 151207 151235 58 + . . scaffold43520 flankbed promoter 151406 151434 . + . ID=CGI_10010719; scaffold43520 TRF Tandem_Repeat 151406 151434 58 + . . scaffold43522 flankbed promoter 60680 61199 . - . ID=CGI_10010546; scaffold43522 TRF Tandem_Repeat 60680 61199 438 + . . scaffold43522 flankbed promoter 60680 61201 . - . ID=CGI_10010546; scaffold43522 TRF Tandem_Repeat 60680 61201 521 + . . scaffold43522 flankbed promoter 60680 61201 . - . ID=CGI_10010546; scaffold43522 TRF Tandem_Repeat 60680 61201 542 + . . scaffold43522 flankbed promoter 61860 61912 . + . ID=CGI_10010547; scaffold43522 TRF Tandem_Repeat 61860 61912 88 + . . scaffold43526 flankbed promoter 36230 36327 . + . ID=CGI_10010784; scaffold43526 TRF Tandem_Repeat 36230 36327 178 + . . scaffold43526 flankbed promoter 168594 169112 . + . ID=CGI_10010788; scaffold43526 WUBlastX LTR_Pao 168354 169112 336 + . . scaffold43526 flankbed promoter 168594 169103 . + . ID=CGI_10010788; scaffold43526 WUBlastX LTR_Pao 168021 169103 279 + . . scaffold43526 flankbed promoter 169042 169170 . + . ID=CGI_10010788; scaffold43526 WUBlastX LTR_Pao 169042 169170 24 + . . scaffold43526 flankbed promoter 169066 169242 . + . ID=CGI_10010788; scaffold43526 WUBlastX LTR_Pao 169066 169242 21 + . . scaffold43536 flankbed promoter 1796 1833 . + . ID=CGI_10010843; scaffold43536 TRF Tandem_Repeat 1796 1833 55 + . . scaffold43536 flankbed promoter 111262 111305 . + . ID=CGI_10010854; scaffold43536 TRF Tandem_Repeat 111262 111305 88 + . . scaffold43536 flankbed promoter 237087 237252 . + . ID=CGI_10010864; scaffold43536 TRF Tandem_Repeat 236238 237252 1400 + . . scaffold43538 flankbed promoter 9591 10073 . + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy-Cigr 9591 10073 157 + . . scaffold43538 flankbed promoter 9567 10157 . + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy-Cigr 9567 10157 79 + . . scaffold43538 flankbed promoter 9612 10388 . + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy 9612 10388 67 + . . scaffold43538 flankbed promoter 34919 35122 . + . ID=CGI_10010815; scaffold43538 WUBlastX LTR_Gypsy-Cigr 34919 35122 89 + . . scaffold43538 flankbed promoter 34628 34780 . + . ID=CGI_10010815; scaffold43538 WUBlastX LTR_Gypsy 34574 34780 186 + . . scaffold43538 flankbed promoter 34628 34918 . + . ID=CGI_10010815; scaffold43538 WUBlastX LTR_Gypsy 34568 34918 77 + . . scaffold43538 flankbed promoter 185493 185691 . + . ID=CGI_10010827; scaffold43538 TRF Tandem_Repeat 183735 185691 1912 + . . scaffold43552 flankbed promoter 179906 180196 . - . ID=CGI_10011020; scaffold43552 WUBlastX LINE_RTE-X 179906 180196 80 - . . scaffold43552 flankbed promoter 179906 180088 . - . ID=CGI_10011020; scaffold43552 WUBlastX LINE_RTE-X 179906 180088 87 - . . scaffold43552 flankbed promoter 179867 180121 . - . ID=CGI_10011020; scaffold43552 WUBlastX LINE_RTE-X 179867 180121 57 - . . scaffold43552 flankbed promoter 179906 180271 . - . ID=CGI_10011020; scaffold43552 WUBlastX LINE_RTE-X 179906 180271 58 - . . scaffold43562 flankbed promoter 147650 147680 . + . ID=CGI_10011036; scaffold43562 TRF Tandem_Repeat 147650 147680 53 + . . scaffold43562 flankbed promoter 185037 185072 . - . ID=CGI_10011039; scaffold43562 TRF Tandem_Repeat 185037 185072 72 + . . scaffold43574 flankbed promoter 55089 55141 . + . ID=CGI_10010870; scaffold43574 TRF Tandem_Repeat 55089 55141 106 + . . scaffold43574 flankbed promoter 128476 128725 . - . ID=CGI_10010875; scaffold43574 TRF Tandem_Repeat 128476 128725 385 + . . scaffold43574 flankbed promoter 245676 245729 . - . ID=CGI_10010883; scaffold43574 WUBlastX LINE_L2 245676 245729 21 + . . scaffold43574 flankbed promoter 246328 246620 . - . ID=CGI_10010883; scaffold43574 WUBlastX LINE_RTE-X 246328 248010 615 + . . scaffold43574 flankbed promoter 246241 246620 . - . ID=CGI_10010883; scaffold43574 WUBlastX LINE_RTE-BovB 246241 246798 126 + . . scaffold43574 flankbed promoter 255279 255402 . + . ID=CGI_10010885; scaffold43574 TRF Tandem_Repeat 255279 255402 82 + . . scaffold43576 flankbed promoter 30728 30974 . - . ID=CGI_10011125; scaffold43576 WUBlastX DNA_MuDR 30728 30994 44 + . . scaffold43576 flankbed promoter 30785 30974 . - . ID=CGI_10011125; scaffold43576 WUBlastX DNA_MuDR 30785 30982 71 + . . scaffold43576 flankbed promoter 30961 30974 . - . ID=CGI_10011125; scaffold43576 WUBlastX DNA_MuDR 30961 31365 74 + . . scaffold43576 flankbed promoter 96025 96062 . - . ID=CGI_10011131; scaffold43576 TRF Tandem_Repeat 96025 96062 76 + . . scaffold43598 flankbed promoter 268182 268258 . - . ID=CGI_10011329; scaffold43598 TRF Tandem_Repeat 268182 268258 118 + . . scaffold43598 flankbed promoter 268860 269040 . - . ID=CGI_10011329; scaffold43598 TRF Tandem_Repeat 268860 269375 761 + . . scaffold43608 flankbed promoter 21264 21312 . + . ID=CGI_10011389; scaffold43608 TRF Tandem_Repeat 21264 21312 98 + . . scaffold43608 flankbed promoter 96686 96729 . - . ID=CGI_10011396; scaffold43608 TRF Tandem_Repeat 96686 96729 88 + . . scaffold43608 flankbed promoter 194533 194664 . + . ID=CGI_10011401; scaffold43608 WUBlastX LTR_Gypsy 194533 194664 35 + . . scaffold43608 flankbed promoter 195440 195517 . + . ID=CGI_10011401; scaffold43608 WUBlastX LTR_Copia 195440 195562 23 + . . scaffold43608 flankbed promoter 194518 194554 . + . ID=CGI_10011401; scaffold43608 WUBlastX LTR_Gypsy 194339 194554 37 + . . scaffold43608 flankbed promoter 242667 243080 . - . ID=CGI_10011404; scaffold43608 WUBlastX DNA_Harbinger 242667 243080 176 - . . scaffold43616 flankbed promoter 91139 91179 . - . ID=CGI_10011415; scaffold43616 TRF Tandem_Repeat 91139 91179 82 + . . scaffold43616 flankbed promoter 91139 91179 . + . ID=CGI_10011416; scaffold43616 TRF Tandem_Repeat 91139 91179 82 + . . scaffold43616 flankbed promoter 97758 97828 . - . ID=CGI_10011417; scaffold43616 TRF Tandem_Repeat 97758 97828 142 + . . scaffold43616 flankbed promoter 251347 251380 . - . ID=CGI_10011427; scaffold43616 TRF Tandem_Repeat 251347 251380 68 + . . scaffold43616 flankbed promoter 251458 251571 . - . ID=CGI_10011427; scaffold43616 TRF Tandem_Repeat 251458 251571 228 + . . scaffold43616 flankbed promoter 251478 251556 . - . ID=CGI_10011427; scaffold43616 TRF Tandem_Repeat 251478 251556 52 + . . scaffold43616 flankbed promoter 251506 251571 . + . ID=CGI_10011428; scaffold43616 TRF Tandem_Repeat 251458 251571 228 + . . scaffold43616 flankbed promoter 251506 251556 . + . ID=CGI_10011428; scaffold43616 TRF Tandem_Repeat 251478 251556 52 + . . scaffold43624 flankbed promoter 270314 270385 . + . ID=CGI_10011513; scaffold43624 TRF Tandem_Repeat 270314 270385 89 + . . scaffold43630 flankbed promoter 149650 149743 . + . ID=CGI_10011526; scaffold43630 TRF Tandem_Repeat 149650 149743 188 + . . scaffold43630 flankbed promoter 149894 149935 . + . ID=CGI_10011526; scaffold43630 TRF Tandem_Repeat 149894 149935 66 + . . scaffold43630 flankbed promoter 149948 149976 . + . ID=CGI_10011526; scaffold43630 TRF Tandem_Repeat 149948 149976 58 + . . scaffold43630 flankbed promoter 273065 273908 . - . ID=CGI_10011530; scaffold43630 WUBlastX LTR_Gypsy 273065 275749 1050 - . . scaffold43634 flankbed promoter 152095 152135 . - . ID=CGI_10011536; scaffold43634 TRF Tandem_Repeat 152095 152135 82 + . . scaffold43634 flankbed promoter 248835 248877 . + . ID=CGI_10011539; scaffold43634 TRF Tandem_Repeat 248835 248877 59 + . . scaffold43634 flankbed promoter 249279 249312 . + . ID=CGI_10011539; scaffold43634 TRF Tandem_Repeat 249279 249312 68 + . . scaffold43648 flankbed promoter 68999 69511 . + . ID=CGI_10011583; scaffold43648 WUBlastX DNA_IS4EU 68999 69511 115 + . . scaffold43648 flankbed promoter 68645 69541 . + . ID=CGI_10011583; scaffold43648 WUBlastX DNA_IS4EU 68645 69541 93 + . . scaffold43648 flankbed promoter 172826 172859 . - . ID=CGI_10011589; scaffold43648 TRF Tandem_Repeat 172826 172859 68 + . . scaffold43660 flankbed promoter 93326 93441 . + . ID=CGI_10011662; scaffold43660 WUBlastX DNA_Harbinger 93326 93706 30 + . . scaffold43660 flankbed promoter 189218 189247 . - . ID=CGI_10011666; scaffold43660 TRF Tandem_Repeat 189218 189247 60 + . . scaffold43660 flankbed promoter 244225 244558 . - . ID=CGI_10011670; scaffold43660 TRF Tandem_Repeat 244225 244832 1157 + . . scaffold43662 flankbed promoter 394 570 . - . ID=CGI_10011602; scaffold43662 WUBlastX DNA_Kolobok-Hyd 88 570 43 - . . scaffold43662 flankbed promoter 394 570 . - . ID=CGI_10011602; scaffold43662 WUBlastX DNA_Kolobok-Hyd 217 570 63 - . . scaffold43664 flankbed promoter 231507 232310 . - . ID=CGI_10011718; scaffold43664 WUBlastX LTR_Gypsy-Cigr 231507 233633 1374 + . . scaffold43676 flankbed promoter 77480 77561 . - . ID=CGI_10011729; scaffold43676 TRF Tandem_Repeat 77480 77561 164 + . . scaffold43676 flankbed promoter 210597 211263 . + . ID=CGI_10011734; scaffold43676 WUBlastX LTR_Gypsy 210082 211263 296 + . . scaffold43676 flankbed promoter 211303 211596 . + . ID=CGI_10011734; scaffold43676 WUBlastX RC_Helitron 211303 211839 32 + . . scaffold43676 flankbed promoter 210597 210927 . + . ID=CGI_10011734; scaffold43676 WUBlastX LTR_Gypsy 210091 210927 372 + . . scaffold43676 flankbed promoter 218974 219046 . + . ID=CGI_10011735; scaffold43676 WUBlastX DNA_TcMar-Tc1 218732 219046 53 + . . scaffold43676 flankbed promoter 219234 219557 . + . ID=CGI_10011735; scaffold43676 WUBlastX DNA_TcMar-Tc1 219234 219557 122 + . . scaffold43676 flankbed promoter 218974 219598 . + . ID=CGI_10011735; scaffold43676 WUBlastX DNA_TcMar-Tc1 218780 219598 89 + . . scaffold43680 flankbed promoter 67834 67948 . - . ID=CGI_10011744; scaffold43680 TRF Tandem_Repeat 67834 67948 92 + . . scaffold43680 flankbed promoter 98467 98520 . - . ID=CGI_10011745; scaffold43680 TRF Tandem_Repeat 98467 98520 108 + . . scaffold43686 flankbed promoter 131524 131595 . + . ID=CGI_10011756; scaffold43686 WUBlastX LTR_Gypsy-Cigr 131524 131595 32 + . . scaffold43686 flankbed promoter 131593 131973 . + . ID=CGI_10011756; scaffold43686 WUBlastX LTR_Gypsy 131593 131973 98 + . . scaffold43692 flankbed promoter 86036 86047 . - . ID=CGI_10011811; scaffold43692 TRF Tandem_Repeat 86036 86081 92 + . . scaffold43696 flankbed promoter 1908 2579 . + . ID=CGI_10011797; scaffold43696 WUBlastX LTR_Gypsy 1908 2579 27 + . . scaffold43696 flankbed promoter 199896 199944 . + . ID=CGI_10011805; scaffold43696 TRF Tandem_Repeat 199850 199944 75 + . . scaffold43702 flankbed promoter 12019 12066 . - . ID=CGI_10011898; scaffold43702 WUBlastX DNA_hAT 10612 12066 475 - . . scaffold43702 flankbed promoter 167400 167448 . + . ID=CGI_10011909; scaffold43702 TRF Tandem_Repeat 167372 167448 138 + . . scaffold43702 flankbed promoter 193857 193988 . - . ID=CGI_10011911; scaffold43702 TRF Tandem_Repeat 193857 193988 99 + . . scaffold43702 flankbed promoter 193788 193948 . - . ID=CGI_10011911; scaffold43702 TRF Tandem_Repeat 193788 193948 68 + . . scaffold43702 flankbed promoter 215086 215133 . + . ID=CGI_10011914; scaffold43702 WUBlastX LINE_L1 215086 215208 50 + . . scaffold43708 flankbed promoter 22304 22481 . - . ID=CGI_10011964; scaffold43708 TRF Tandem_Repeat 22304 22481 221 + . . scaffold43708 flankbed promoter 68409 68434 . - . ID=CGI_10011966; scaffold43708 TRF Tandem_Repeat 68409 68434 52 + . . scaffold43708 flankbed promoter 70710 70770 . + . ID=CGI_10011967; scaffold43708 TRF Tandem_Repeat 70710 70770 88 + . . scaffold43708 flankbed promoter 128802 128945 . + . ID=CGI_10011970; scaffold43708 WUBlastX DNA_Crypton 128802 128945 52 + . . scaffold43726 flankbed promoter 195940 195984 . - . ID=CGI_10012025; scaffold43726 TRF Tandem_Repeat 195940 195984 90 + . . scaffold43726 flankbed promoter 221378 221650 . + . ID=CGI_10012027; scaffold43726 WUBlastX LINE_CR1-L2 221378 221650 82 - . . scaffold43726 flankbed promoter 248724 248749 . + . ID=CGI_10012028; scaffold43726 TRF Tandem_Repeat 248724 248749 52 + . . scaffold43742 flankbed promoter 247779 247892 . - . ID=CGI_10012115; scaffold43742 TRF Tandem_Repeat 247779 247892 134 + . . scaffold43742 flankbed promoter 247786 247886 . - . ID=CGI_10012115; scaffold43742 TRF Tandem_Repeat 247786 247886 134 + . . scaffold43742 flankbed promoter 247910 248249 . - . ID=CGI_10012115; scaffold43742 TRF Tandem_Repeat 247910 248370 581 + . . scaffold43742 flankbed promoter 247999 248370 . + . ID=CGI_10012116; scaffold43742 TRF Tandem_Repeat 247910 248370 581 + . . scaffold43742 flankbed promoter 306288 306908 . - . ID=CGI_10012120; scaffold43742 WUBlastX LINE_RTE-X 306288 307967 805 - . . scaffold43764 flankbed promoter 51708 51769 . + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 51708 51769 99 + . . scaffold43764 flankbed promoter 170811 170907 . - . ID=CGI_10012180; scaffold43764 TRF Tandem_Repeat 170811 171445 922 + . . scaffold43764 flankbed promoter 184954 184987 . - . ID=CGI_10012181; scaffold43764 TRF Tandem_Repeat 184954 184987 68 + . . scaffold43764 flankbed promoter 185333 185367 . - . ID=CGI_10012181; scaffold43764 TRF Tandem_Repeat 185333 185367 70 + . . scaffold43764 flankbed promoter 192503 192975 . + . ID=CGI_10012182; scaffold43764 TRF Tandem_Repeat 192503 192975 662 + . . scaffold43782 flankbed promoter 197415 197457 . - . ID=CGI_10012368; scaffold43782 TRF Tandem_Repeat 197415 197457 86 + . . scaffold43782 flankbed promoter 198168 198221 . - . ID=CGI_10012368; scaffold43782 TRF Tandem_Repeat 198168 198221 108 + . . scaffold43782 flankbed promoter 251523 251840 . - . ID=CGI_10012370; scaffold43782 WUBlastX LINE_RTE-X 251523 251840 39 + . . scaffold43786 flankbed promoter 285812 285837 . + . ID=CGI_10012358; scaffold43786 TRF Tandem_Repeat 285812 285837 52 + . . scaffold43786 flankbed promoter 285866 285910 . + . ID=CGI_10012358; scaffold43786 TRF Tandem_Repeat 285866 285910 90 + . . scaffold43794 flankbed promoter 4598 4663 . + . ID=CGI_10012412; scaffold43794 TRF Tandem_Repeat 4598 4663 105 + . . scaffold43798 flankbed promoter 50980 51044 . - . ID=CGI_10012536; scaffold43798 TRF Tandem_Repeat 50980 51044 130 + . . scaffold43798 flankbed promoter 78202 78252 . - . ID=CGI_10012537; scaffold43798 TRF Tandem_Repeat 78202 78252 57 + . . scaffold43798 flankbed promoter 254772 254832 . + . ID=CGI_10012542; scaffold43798 TRF Tandem_Repeat 254772 254832 79 + . . scaffold43798 flankbed promoter 254761 254832 . + . ID=CGI_10012542; scaffold43798 TRF Tandem_Repeat 254761 254832 87 + . . scaffold43798 flankbed promoter 254831 254862 . + . ID=CGI_10012542; scaffold43798 TRF Tandem_Repeat 254831 254862 55 + . . scaffold43798 flankbed promoter 319676 319725 . - . ID=CGI_10012545; scaffold43798 TRF Tandem_Repeat 319676 319725 100 + . . scaffold43798 flankbed promoter 319874 319920 . - . ID=CGI_10012545; scaffold43798 TRF Tandem_Repeat 319874 319920 94 + . . scaffold43798 flankbed promoter 319990 320036 . - . ID=CGI_10012545; scaffold43798 TRF Tandem_Repeat 319990 320036 94 + . . scaffold43818 flankbed promoter 26955 26999 . + . ID=CGI_10012755; scaffold43818 TRF Tandem_Repeat 26955 26999 90 + . . scaffold43818 flankbed promoter 252080 252468 . - . ID=CGI_10012772; scaffold43818 WUBlastX LTR_Gypsy 252080 252877 398 + . . scaffold43818 flankbed promoter 252161 252468 . - . ID=CGI_10012772; scaffold43818 WUBlastX LTR_Gypsy 252161 253078 90 + . . scaffold43818 flankbed promoter 251852 252468 . - . ID=CGI_10012772; scaffold43818 WUBlastX LTR_ERV1 251852 252574 48 + . . scaffold43818 flankbed promoter 317920 318447 . + . ID=CGI_10012777; scaffold43818 WUBlastX LTR_Gypsy 317920 318447 86 + . . scaffold43818 flankbed promoter 318121 318594 . + . ID=CGI_10012777; scaffold43818 WUBlastX LTR_Gypsy-Cigr 318121 318594 146 + . . scaffold43818 flankbed promoter 318136 318756 . + . ID=CGI_10012777; scaffold43818 WUBlastX LTR_Gypsy-Cigr 318136 318756 119 + . . scaffold43836 flankbed promoter 98095 98618 . + . ID=CGI_10013055; scaffold43836 TRF Tandem_Repeat 98095 98618 843 + . . scaffold43836 flankbed promoter 144627 144750 . + . ID=CGI_10013057; scaffold43836 TRF Tandem_Repeat 144627 144750 131 + . . scaffold43842 flankbed promoter 24047 24087 . + . ID=CGI_10013095; scaffold43842 TRF Tandem_Repeat 24047 24087 82 + . . scaffold43842 flankbed promoter 24085 24125 . + . ID=CGI_10013095; scaffold43842 TRF Tandem_Repeat 24085 24125 82 + . . scaffold43842 flankbed promoter 223132 223215 . - . ID=CGI_10013105; scaffold43842 WUBlastX LINE_RTE-BovB 223132 223215 29 - . . scaffold43842 flankbed promoter 340320 340783 . - . ID=CGI_10013114; scaffold43842 WUBlastX LTR_Ngaro 340320 341201 388 - . . scaffold43842 flankbed promoter 340298 340390 . - . ID=CGI_10013114; scaffold43842 WUBlastX LTR_Gypsy 340298 340390 22 - . . scaffold43842 flankbed promoter 339784 339963 . - . ID=CGI_10013114; scaffold43842 WUBlastX LINE_RTE-X 339586 339963 43 - . . scaffold43844 flankbed promoter 44688 44744 . + . ID=CGI_10013143; scaffold43844 TRF Tandem_Repeat 44688 44744 87 + . . scaffold43844 flankbed promoter 140507 140608 . + . ID=CGI_10013147; scaffold43844 WUBlastX RC_Helitron 140507 140620 37 + . . scaffold43844 flankbed promoter 154817 155563 . - . ID=CGI_10013148; scaffold43844 WUBlastX LINE_CR1 154817 155563 96 - . . scaffold43844 flankbed promoter 158458 158505 . + . ID=CGI_10013149; scaffold43844 WUBlastX DNA_Kolobok-IS4 158458 158505 29 + . . scaffold43844 flankbed promoter 202930 203006 . + . ID=CGI_10013153; scaffold43844 TRF Tandem_Repeat 202930 203006 54 + . . scaffold43844 flankbed promoter 284485 284631 . + . ID=CGI_10013156; scaffold43844 TRF Tandem_Repeat 284485 284631 73 + . . scaffold43844 flankbed promoter 284476 284731 . + . ID=CGI_10013156; scaffold43844 TRF Tandem_Repeat 284476 284731 72 + . . scaffold43868 flankbed promoter 362236 362264 . - . ID=CGI_10013671; scaffold43868 TRF Tandem_Repeat 362236 362264 58 + . . scaffold43878 flankbed promoter 63192 63245 . + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 63192 63506 111 + . . scaffold43878 flankbed promoter 63062 63214 . + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 63062 63214 39 + . . scaffold43878 flankbed promoter 63243 63245 . + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 63243 63518 150 + . . scaffold43878 flankbed promoter 63010 63108 . + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 63010 63108 34 + . . scaffold43878 flankbed promoter 92746 93045 . - . ID=CGI_10013714; scaffold43878 WUBlastX LINE_RTE-X 92746 93096 28 - . . scaffold43878 flankbed promoter 92887 93045 . - . ID=CGI_10013714; scaffold43878 WUBlastX LINE_RTE-X 92887 93096 56 - . . scaffold43878 flankbed promoter 92887 93045 . - . ID=CGI_10013714; scaffold43878 WUBlastX LINE_RTE-X 92887 93216 29 - . . scaffold43878 flankbed promoter 93029 93096 . + . ID=CGI_10013715; scaffold43878 WUBlastX LINE_RTE-X 92746 93096 28 - . . scaffold43878 flankbed promoter 93029 93096 . + . ID=CGI_10013715; scaffold43878 WUBlastX LINE_RTE-X 92887 93096 56 - . . scaffold43878 flankbed promoter 93029 93216 . + . ID=CGI_10013715; scaffold43878 WUBlastX LINE_RTE-X 92887 93216 29 - . . scaffold43878 flankbed promoter 330753 331139 . + . ID=CGI_10013732; scaffold43878 WUBlastX LINE_RTE-X 330753 331139 20 + . . scaffold43878 flankbed promoter 330735 331040 . + . ID=CGI_10013732; scaffold43878 WUBlastX LINE_RTE-X 330735 331040 27 + . . scaffold43894 flankbed promoter 52749 52813 . - . ID=CGI_10013878; scaffold43894 TRF Tandem_Repeat 52749 52813 85 + . . scaffold43894 flankbed promoter 79210 79254 . - . ID=CGI_10013880; scaffold43894 TRF Tandem_Repeat 79210 79254 76 + . . scaffold43894 flankbed promoter 106953 106998 . - . ID=CGI_10013882; scaffold43894 TRF Tandem_Repeat 106953 106998 92 + . . scaffold43894 flankbed promoter 223536 223565 . - . ID=CGI_10013887; scaffold43894 TRF Tandem_Repeat 223536 223565 60 + . . scaffold43920 flankbed promoter 43438 43477 . + . ID=CGI_10013987; scaffold43920 TRF Tandem_Repeat 43438 43477 80 + . . scaffold43932 flankbed promoter 30522 30615 . + . ID=CGI_10014106; scaffold43932 TRF Tandem_Repeat 30522 30615 107 + . . scaffold43932 flankbed promoter 30662 30750 . + . ID=CGI_10014106; scaffold43932 TRF Tandem_Repeat 30662 30750 119 + . . scaffold43932 flankbed promoter 148659 148683 . + . ID=CGI_10014118; scaffold43932 TRF Tandem_Repeat 148659 148683 50 + . . scaffold43932 flankbed promoter 175524 175572 . - . ID=CGI_10014121; scaffold43932 TRF Tandem_Repeat 175524 175572 89 + . . scaffold43932 flankbed promoter 271201 271270 . - . ID=CGI_10014124; scaffold43932 TRF Tandem_Repeat 271201 271270 140 + . . scaffold43932 flankbed promoter 335755 336153 . - . ID=CGI_10014128; scaffold43932 TRF Tandem_Repeat 335755 336421 1235 + . . scaffold43932 flankbed promoter 335755 336421 . + . ID=CGI_10014129; scaffold43932 TRF Tandem_Repeat 335755 336421 1235 + . . scaffold43940 flankbed promoter 8845 8889 . + . ID=CGI_10014148; scaffold43940 TRF Tandem_Repeat 8825 8889 112 + . . scaffold43940 flankbed promoter 137158 137291 . - . ID=CGI_10014153; scaffold43940 TRF Tandem_Repeat 137158 137291 178 + . . scaffold43940 flankbed promoter 167334 167577 . - . ID=CGI_10014156; scaffold43940 TRF Tandem_Repeat 167334 167577 201 + . . scaffold43940 flankbed promoter 298103 298148 . + . ID=CGI_10014161; scaffold43940 TRF Tandem_Repeat 297569 298148 660 + . . scaffold43940 flankbed promoter 388552 388683 . + . ID=CGI_10014164; scaffold43940 WUBlastX LTR_Gypsy 388552 388683 26 + . . scaffold43954 flankbed promoter 334565 334681 . + . ID=CGI_10014586; scaffold43954 WUBlastX DNA_MuDR 334565 334681 21 + . . scaffold43954 flankbed promoter 334763 334846 . + . ID=CGI_10014586; scaffold43954 WUBlastX DNA_MuDR 334763 335032 82 + . . scaffold43954 flankbed promoter 334260 334484 . + . ID=CGI_10014586; scaffold43954 WUBlastX DNA_MuDR 334260 334484 40 + . . scaffold43954 flankbed promoter 334616 334846 . + . ID=CGI_10014586; scaffold43954 WUBlastX DNA_MuDR 334616 335029 41 + . . scaffold43954 flankbed promoter 334817 334846 . + . ID=CGI_10014586; scaffold43954 WUBlastX DNA_MuDR 334817 335170 49 + . . scaffold43956 flankbed promoter 20428 20467 . - . ID=CGI_10014616; scaffold43956 TRF Tandem_Repeat 20428 20467 80 + . . scaffold43956 flankbed promoter 24407 24458 . + . ID=CGI_10014618; scaffold43956 WUBlastX LTR_Gypsy 23952 24458 26 + . . scaffold43956 flankbed promoter 24590 24751 . + . ID=CGI_10014618; scaffold43956 WUBlastX LTR_Copia 24590 24751 30 + . . scaffold43956 flankbed promoter 109980 110004 . - . ID=CGI_10014621; scaffold43956 TRF Tandem_Repeat 109980 110004 50 + . . scaffold43964 flankbed promoter 100902 100926 . - . ID=CGI_10014640; scaffold43964 TRF Tandem_Repeat 100902 100926 50 + . . scaffold43964 flankbed promoter 101041 101081 . - . ID=CGI_10014640; scaffold43964 TRF Tandem_Repeat 101041 101081 75 + . . scaffold43964 flankbed promoter 128296 129295 . + . ID=CGI_10014642; scaffold43964 WUBlastX DNA_hAT 128276 129478 537 + . . scaffold43964 flankbed promoter 266361 266454 . + . ID=CGI_10014653; scaffold43964 TRF Tandem_Repeat 266361 266454 57 + . . scaffold43964 flankbed promoter 321073 321232 . - . ID=CGI_10014657; scaffold43964 TRF Tandem_Repeat 321073 321232 220 + . . scaffold43964 flankbed promoter 329168 329191 . - . ID=CGI_10014659; scaffold43964 WUBlastX LINE_Penelope 329168 329503 71 + . . scaffold43986 flankbed promoter 394151 394244 . - . ID=CGI_10015036; scaffold43986 TRF Tandem_Repeat 394151 394244 125 + . . scaffold43986 flankbed promoter 394151 394245 . - . ID=CGI_10015036; scaffold43986 TRF Tandem_Repeat 394151 394245 165 + . . scaffold43988 flankbed promoter 379043 379221 . - . ID=CGI_10014981; scaffold43988 WUBlastX LINE_RTE-X 379043 379585 147 + . . scaffold43988 flankbed promoter 386251 386313 . + . ID=CGI_10014982; scaffold43988 TRF Tandem_Repeat 386251 386313 126 + . . scaffold44 flankbed promoter 243375 243405 . - . ID=CGI_10016826; scaffold44 WUBlastX LTR_Ngaro 243375 243488 46 + . . scaffold44 flankbed promoter 243533 243856 . + . ID=CGI_10016827; scaffold44 WUBlastX LTR_Ngaro 243533 243856 169 + . . scaffold44 flankbed promoter 243375 243488 . + . ID=CGI_10016827; scaffold44 WUBlastX LTR_Ngaro 243375 243488 46 + . . scaffold44 flankbed promoter 243551 244033 . + . ID=CGI_10016827; scaffold44 WUBlastX LTR_Ngaro 243551 244033 55 + . . scaffold440 flankbed promoter 230390 230436 . - . ID=CGI_10014140; scaffold440 TRF Tandem_Repeat 230390 230436 94 + . . scaffold440 flankbed promoter 260988 261038 . - . ID=CGI_10014141; scaffold440 TRF Tandem_Repeat 260988 261038 68 + . . scaffold440 flankbed promoter 260987 261038 . - . ID=CGI_10014141; scaffold440 TRF Tandem_Repeat 260987 261038 88 + . . scaffold44006 flankbed promoter 118684 118875 . - . ID=CGI_10015575; scaffold44006 TRF Tandem_Repeat 118684 118875 368 + . . scaffold44006 flankbed promoter 118681 119174 . - . ID=CGI_10015575; scaffold44006 TRF Tandem_Repeat 118681 119174 158 + . . scaffold44006 flankbed promoter 267365 267415 . - . ID=CGI_10015582; scaffold44006 TRF Tandem_Repeat 267365 267415 93 + . . scaffold44008 flankbed promoter 35468 35491 . + . ID=CGI_10015280; scaffold44008 WUBlastX DNA_Harbinger 35468 35608 40 + . . scaffold44008 flankbed promoter 35468 35608 . + . ID=CGI_10015281; scaffold44008 WUBlastX DNA_Harbinger 35468 35608 40 + . . scaffold44008 flankbed promoter 35927 36124 . + . ID=CGI_10015281; scaffold44008 WUBlastX DNA_Harbinger 35927 36124 34 + . . scaffold44008 flankbed promoter 64605 64721 . + . ID=CGI_10015283; scaffold44008 TRF Tandem_Repeat 64605 64721 102 + . . scaffold44008 flankbed promoter 64606 64720 . + . ID=CGI_10015283; scaffold44008 TRF Tandem_Repeat 64606 64720 126 + . . scaffold44008 flankbed promoter 180765 180956 . + . ID=CGI_10015291; scaffold44008 WUBlastX LINE_L2 180765 180956 27 - . . scaffold44008 flankbed promoter 420102 420109 . - . ID=CGI_10015302; scaffold44008 TRF Tandem_Repeat 420102 420208 114 + . . scaffold44054 flankbed promoter 47700 47840 . - . ID=CGI_10016153; scaffold44054 WUBlastX DNA_PiggyBac 47700 47840 50 - . . scaffold44054 flankbed promoter 48692 48937 . + . ID=CGI_10016154; scaffold44054 WUBlastX DNA_PiggyBac 48692 48937 37 - . . scaffold44054 flankbed promoter 48930 49028 . + . ID=CGI_10016154; scaffold44054 WUBlastX DNA_PiggyBac 48930 49028 45 - . . scaffold44054 flankbed promoter 48945 49028 . + . ID=CGI_10016154; scaffold44054 WUBlastX DNA_PiggyBac 48945 49028 58 - . . scaffold44054 flankbed promoter 48930 49124 . + . ID=CGI_10016154; scaffold44054 WUBlastX DNA_PiggyBac 48930 49124 29 - . . scaffold44054 flankbed promoter 49211 49248 . + . ID=CGI_10016154; scaffold44054 TRF Tandem_Repeat 49211 49248 76 + . . scaffold44054 flankbed promoter 73388 73414 . - . ID=CGI_10016156; scaffold44054 WUBlastX DNA_Kolobok-Hyd 73388 73603 31 - . . scaffold44054 flankbed promoter 72415 72432 . - . ID=CGI_10016156; scaffold44054 WUBlastX DNA_Kolobok-Hyd 72031 72432 27 - . . scaffold44054 flankbed promoter 124682 125144 . - . ID=CGI_10016158; scaffold44054 TRF Tandem_Repeat 124682 125234 408 + . . scaffold44054 flankbed promoter 124682 125144 . - . ID=CGI_10016158; scaffold44054 TRF Tandem_Repeat 124682 125234 532 + . . scaffold44054 flankbed promoter 252704 252736 . + . ID=CGI_10016168; scaffold44054 TRF Tandem_Repeat 252704 252736 66 + . . scaffold44054 flankbed promoter 304007 304219 . - . ID=CGI_10016170; scaffold44054 TRF Tandem_Repeat 304007 304219 345 + . . scaffold44054 flankbed promoter 351028 351063 . + . ID=CGI_10016174; scaffold44054 TRF Tandem_Repeat 350913 351063 123 + . . scaffold44054 flankbed promoter 374884 374933 . - . ID=CGI_10016175; scaffold44054 TRF Tandem_Repeat 374884 374933 100 + . . scaffold44054 flankbed promoter 397095 397137 . + . ID=CGI_10016178; scaffold44054 TRF Tandem_Repeat 397095 397137 86 + . . scaffold44064 flankbed promoter 94149 94206 . - . ID=CGI_10016753; scaffold44064 TRF Tandem_Repeat 94149 94206 61 + . . scaffold44064 flankbed promoter 152378 152427 . - . ID=CGI_10016758; scaffold44064 TRF Tandem_Repeat 152378 152427 77 + . . scaffold44064 flankbed promoter 152380 152427 . - . ID=CGI_10016758; scaffold44064 TRF Tandem_Repeat 152380 152427 73 + . . scaffold44064 flankbed promoter 216180 216222 . - . ID=CGI_10016763; scaffold44064 TRF Tandem_Repeat 216180 216222 68 + . . scaffold44064 flankbed promoter 216180 216222 . + . ID=CGI_10016764; scaffold44064 TRF Tandem_Repeat 216180 216222 68 + . . scaffold44064 flankbed promoter 455601 455636 . + . ID=CGI_10016786; scaffold44064 TRF Tandem_Repeat 455601 455636 63 + . . scaffold44098 flankbed promoter 11815 11851 . - . ID=CGI_10017694; scaffold44098 TRF Tandem_Repeat 11815 11881 59 + . . scaffold44098 flankbed promoter 230830 230913 . + . ID=CGI_10017709; scaffold44098 TRF Tandem_Repeat 230830 230913 70 + . . scaffold44098 flankbed promoter 422757 422788 . + . ID=CGI_10017721; scaffold44098 TRF Tandem_Repeat 422757 422788 64 + . . scaffold44098 flankbed promoter 498858 499499 . - . ID=CGI_10017728; scaffold44098 WUBlastX LINE_L1-Tx1 498858 499499 85 + . . scaffold44098 flankbed promoter 499469 499583 . - . ID=CGI_10017728; scaffold44098 WUBlastX LINE_L1-Tx1 499469 499813 70 + . . scaffold442 flankbed promoter 79702 79785 . + . ID=CGI_10005515; scaffold442 WUBlastX LINE_CR1-L2 79702 80058 109 + . . scaffold442 flankbed promoter 79564 79785 . + . ID=CGI_10005515; scaffold442 WUBlastX LINE_L2 79564 80046 78 + . . scaffold443 flankbed promoter 252112 253003 . - . ID=CGI_10022767; scaffold443 TRF Tandem_Repeat 252112 253003 1252 + . . scaffold443 flankbed promoter 259437 259627 . + . ID=CGI_10022768; scaffold443 TRF Tandem_Repeat 259437 259627 328 + . . scaffold443 flankbed promoter 301682 301814 . + . ID=CGI_10022771; scaffold443 TRF Tandem_Repeat 301682 301814 223 + . . scaffold443 flankbed promoter 711760 711819 . - . ID=CGI_10022786; scaffold443 TRF Tandem_Repeat 711760 711819 120 + . . scaffold443 flankbed promoter 772446 772494 . - . ID=CGI_10022790; scaffold443 TRF Tandem_Repeat 772446 772494 98 + . . scaffold443 flankbed promoter 773249 773249 . - . ID=CGI_10022790; scaffold443 TRF Tandem_Repeat 773249 773330 116 + . . scaffold444 flankbed promoter 39080 39220 . - . ID=CGI_10017431; scaffold444 WUBlastX LTR_Ngaro 38693 39220 42 - . . scaffold444 flankbed promoter 498999 499039 . - . ID=CGI_10017440; scaffold444 TRF Tandem_Repeat 498999 499039 82 + . . scaffold444 flankbed promoter 498999 499039 . + . ID=CGI_10017441; scaffold444 TRF Tandem_Repeat 498999 499039 82 + . . scaffold445 flankbed promoter 13834 14083 . - . ID=CGI_10019421; scaffold445 TRF Tandem_Repeat 13834 14083 92 + . . scaffold445 flankbed promoter 214012 214040 . - . ID=CGI_10019435; scaffold445 TRF Tandem_Repeat 214012 214040 58 + . . scaffold445 flankbed promoter 372534 372633 . - . ID=CGI_10019447; scaffold445 TRF Tandem_Repeat 372534 372633 191 + . . scaffold445 flankbed promoter 428394 428443 . - . ID=CGI_10019449; scaffold445 TRF Tandem_Repeat 428394 428443 56 + . . scaffold445 flankbed promoter 449683 449713 . - . ID=CGI_10019450; scaffold445 TRF Tandem_Repeat 449683 449713 62 + . . scaffold445 flankbed promoter 583889 583950 . - . ID=CGI_10019457; scaffold445 TRF Tandem_Repeat 583889 583950 115 + . . scaffold447 flankbed promoter 277033 277272 . - . ID=CGI_10014230; scaffold447 TRF Tandem_Repeat 277033 277272 444 + . . scaffold448 flankbed promoter 53445 53551 . + . ID=CGI_10024929; scaffold448 TRF Tandem_Repeat 53445 53551 115 + . . scaffold448 flankbed promoter 53442 53530 . + . ID=CGI_10024929; scaffold448 TRF Tandem_Repeat 53442 53530 121 + . . scaffold448 flankbed promoter 121025 121145 . + . ID=CGI_10024932; scaffold448 TRF Tandem_Repeat 120435 121145 1176 + . . scaffold448 flankbed promoter 213247 213387 . + . ID=CGI_10024936; scaffold448 WUBlastX DNA_Kolobok-Hyd 213247 213768 25 + . . scaffold448 flankbed promoter 213343 213387 . + . ID=CGI_10024936; scaffold448 WUBlastX DNA_Kolobok-Hyd 213343 213768 43 + . . scaffold448 flankbed promoter 308997 309245 . + . ID=CGI_10024939; scaffold448 WUBlastX DNA_Sola 308997 309731 205 + . . scaffold448 flankbed promoter 839923 839958 . + . ID=CGI_10024964; scaffold448 TRF Tandem_Repeat 839923 839958 72 + . . scaffold448 flankbed promoter 888880 889166 . - . ID=CGI_10024967; scaffold448 TRF Tandem_Repeat 888880 889331 591 + . . scaffold449 flankbed promoter 1954 2040 . + . ID=CGI_10010960; scaffold449 TRF Tandem_Repeat 1954 2040 113 + . . scaffold449 flankbed promoter 201197 201256 . - . ID=CGI_10010963; scaffold449 TRF Tandem_Repeat 201197 201256 120 + . . scaffold450 flankbed promoter 91091 91134 . - . ID=CGI_10010320; scaffold450 TRF Tandem_Repeat 91091 91134 54 + . . scaffold450 flankbed promoter 91908 92007 . - . ID=CGI_10010320; scaffold450 TRF Tandem_Repeat 91908 92007 59 + . . scaffold450 flankbed promoter 91909 91986 . - . ID=CGI_10010320; scaffold450 TRF Tandem_Repeat 91909 91986 59 + . . scaffold450 flankbed promoter 91925 91998 . - . ID=CGI_10010320; scaffold450 TRF Tandem_Repeat 91925 91998 61 + . . scaffold450 flankbed promoter 116752 116866 . - . ID=CGI_10010321; scaffold450 TRF Tandem_Repeat 116752 116866 90 + . . scaffold452 flankbed promoter 95661 95854 . - . ID=CGI_10007654; scaffold452 TRF Tandem_Repeat 95661 95854 324 + . . scaffold452 flankbed promoter 96106 96365 . - . ID=CGI_10007654; scaffold452 TRF Tandem_Repeat 96106 96365 475 + . . scaffold453 flankbed promoter 209970 210010 . + . ID=CGI_10015043; scaffold453 TRF Tandem_Repeat 209970 210010 82 + . . scaffold453 flankbed promoter 346107 346557 . + . ID=CGI_10015050; scaffold453 TRF Tandem_Repeat 346107 346557 623 + . . scaffold454 flankbed promoter 42731 42776 . + . ID=CGI_10011624; scaffold454 TRF Tandem_Repeat 42731 42776 56 + . . scaffold454 flankbed promoter 74391 74633 . - . ID=CGI_10011626; scaffold454 TRF Tandem_Repeat 74391 74633 106 + . . scaffold454 flankbed promoter 74391 74633 . + . ID=CGI_10011627; scaffold454 TRF Tandem_Repeat 74391 74633 106 + . . scaffold454 flankbed promoter 186873 187321 . - . ID=CGI_10011632; scaffold454 TRF Tandem_Repeat 186873 187321 407 + . . scaffold454 flankbed promoter 215404 215464 . + . ID=CGI_10011634; scaffold454 TRF Tandem_Repeat 215404 215464 122 + . . scaffold456 flankbed promoter 95800 96246 . - . ID=CGI_10006862; scaffold456 WUBlastX LINE_L1 95800 96246 97 - . . scaffold456 flankbed promoter 95827 96438 . - . ID=CGI_10006862; scaffold456 WUBlastX LINE_L1-Tx1 95827 96438 32 - . . scaffold457 flankbed promoter 229781 230020 . - . ID=CGI_10014535; scaffold457 WUBlastX LTR_Gypsy 229781 230020 51 - . . scaffold457 flankbed promoter 371475 371518 . - . ID=CGI_10014542; scaffold457 TRF Tandem_Repeat 371475 371518 52 + . . scaffold459 flankbed promoter 242465 242576 . - . ID=CGI_10018173; scaffold459 TRF Tandem_Repeat 242465 242576 116 + . . scaffold459 flankbed promoter 284471 284597 . - . ID=CGI_10018175; scaffold459 TRF Tandem_Repeat 284471 284597 78 + . . scaffold459 flankbed promoter 364665 364958 . - . ID=CGI_10018183; scaffold459 WUBlastX LTR_Gypsy 364665 364958 69 - . . scaffold459 flankbed promoter 365428 365622 . - . ID=CGI_10018183; scaffold459 WUBlastX LTR_Gypsy-Cigr 365428 365967 158 - . . scaffold459 flankbed promoter 364707 364934 . - . ID=CGI_10018183; scaffold459 WUBlastX LTR_Gypsy 364707 364934 77 - . . scaffold459 flankbed promoter 364623 364922 . - . ID=CGI_10018183; scaffold459 WUBlastX LTR_Gypsy 364617 364922 52 - . . scaffold459 flankbed promoter 364942 365037 . - . ID=CGI_10018183; scaffold459 WUBlastX LTR_Gypsy 364942 365037 47 - . . scaffold459 flankbed promoter 364945 365622 . - . ID=CGI_10018183; scaffold459 WUBlastX LTR_Gypsy 364945 365706 35 - . . scaffold459 flankbed promoter 365200 365622 . - . ID=CGI_10018183; scaffold459 WUBlastX LTR_Gypsy 365200 365946 105 - . . scaffold459 flankbed promoter 390223 390272 . - . ID=CGI_10018184; scaffold459 TRF Tandem_Repeat 390223 390272 77 + . . scaffold461 flankbed promoter 103581 103757 . - . ID=CGI_10020103; scaffold461 WUBlastX DNA_TcMar-Tc1 103581 103757 81 + . . scaffold461 flankbed promoter 103786 103927 . - . ID=CGI_10020103; scaffold461 WUBlastX DNA_TcMar-Tc1 103786 104427 283 + . . scaffold461 flankbed promoter 461095 461711 . - . ID=CGI_10020114; scaffold461 WUBlastX RC_Helitron 461095 462411 543 - . . scaffold469 flankbed promoter 107729 107755 . - . ID=CGI_10024668; scaffold469 WUBlastX DNA_hAT 107063 107755 131 - . . scaffold469 flankbed promoter 158257 158322 . - . ID=CGI_10024669; scaffold469 WUBlastX DNA_Crypton 158257 158841 121 + . . scaffold469 flankbed promoter 226615 226648 . - . ID=CGI_10024670; scaffold469 TRF Tandem_Repeat 226615 226648 59 + . . scaffold469 flankbed promoter 226646 226676 . - . ID=CGI_10024670; scaffold469 TRF Tandem_Repeat 226646 226676 62 + . . scaffold469 flankbed promoter 360133 360638 . + . ID=CGI_10024676; scaffold469 TRF Tandem_Repeat 360133 360638 904 + . . scaffold469 flankbed promoter 439275 439312 . - . ID=CGI_10024681; scaffold469 TRF Tandem_Repeat 439275 439312 76 + . . scaffold471 flankbed promoter 58425 58465 . - . ID=CGI_10026998; scaffold471 TRF Tandem_Repeat 58425 58465 82 + . . scaffold471 flankbed promoter 118156 118191 . - . ID=CGI_10027003; scaffold471 TRF Tandem_Repeat 118156 118191 72 + . . scaffold471 flankbed promoter 120206 120335 . + . ID=CGI_10027004; scaffold471 WUBlastX LINE_RTE-X 120006 120335 50 + . . scaffold471 flankbed promoter 120206 120215 . + . ID=CGI_10027004; scaffold471 WUBlastX LINE_RTE-X 120006 120215 59 + . . scaffold471 flankbed promoter 120206 120299 . + . ID=CGI_10027004; scaffold471 WUBlastX LINE_RTE-X 119919 120299 31 + . . scaffold471 flankbed promoter 134385 134436 . - . ID=CGI_10027005; scaffold471 TRF Tandem_Repeat 134385 134436 104 + . . scaffold471 flankbed promoter 324320 324526 . + . ID=CGI_10027009; scaffold471 WUBlastX DNA_IS4EU 324320 324526 52 + . . scaffold471 flankbed promoter 325164 325187 . + . ID=CGI_10027009; scaffold471 WUBlastX DNA_IS4EU 325164 326165 445 + . . scaffold471 flankbed promoter 324254 324604 . + . ID=CGI_10027009; scaffold471 WUBlastX DNA_IS4EU 324254 324604 45 + . . scaffold471 flankbed promoter 324212 324640 . + . ID=CGI_10027009; scaffold471 WUBlastX DNA_IS4EU 324212 324640 21 + . . scaffold471 flankbed promoter 324254 324484 . + . ID=CGI_10027009; scaffold471 WUBlastX DNA_hAT-Tip100 324254 324484 54 + . . scaffold471 flankbed promoter 353155 353370 . + . ID=CGI_10027010; scaffold471 WUBlastX LTR_Gypsy 353044 353370 68 + . . scaffold471 flankbed promoter 917326 917358 . + . ID=CGI_10027029; scaffold471 TRF Tandem_Repeat 917326 917358 66 + . . scaffold471 flankbed promoter 1239510 1239579 . - . ID=CGI_10027038; scaffold471 TRF Tandem_Repeat 1239510 1239579 131 + . . scaffold472 flankbed promoter 120642 120658 . - . ID=CGI_10018502; scaffold472 WUBlastX LINE_RTE-X 120642 121496 277 + . . scaffold472 flankbed promoter 120618 120658 . - . ID=CGI_10018502; scaffold472 WUBlastX LINE_RTE-X 120618 120737 33 + . . scaffold472 flankbed promoter 275748 275992 . - . ID=CGI_10018513; scaffold472 TRF Tandem_Repeat 275748 275992 337 + . . scaffold472 flankbed promoter 378928 379005 . + . ID=CGI_10018518; scaffold472 TRF Tandem_Repeat 378928 379005 147 + . . scaffold473 flankbed promoter 4480 4527 . + . ID=CGI_10010578; scaffold473 TRF Tandem_Repeat 4480 4527 96 + . . scaffold473 flankbed promoter 4688 4736 . + . ID=CGI_10010578; scaffold473 TRF Tandem_Repeat 4688 4736 89 + . . scaffold473 flankbed promoter 103696 103737 . - . ID=CGI_10010581; scaffold473 TRF Tandem_Repeat 103696 103737 84 + . . scaffold474 flankbed promoter 107239 107277 . + . ID=CGI_10007593; scaffold474 TRF Tandem_Repeat 107239 107277 51 + . . scaffold474 flankbed promoter 184675 184746 . - . ID=CGI_10007598; scaffold474 WUBlastX LTR_Copia 184675 184746 24 - . . scaffold474 flankbed promoter 184990 185050 . - . ID=CGI_10007598; scaffold474 WUBlastX LTR_Gypsy 184990 185901 145 - . . scaffold474 flankbed promoter 185377 185901 . - . ID=CGI_10007599; scaffold474 WUBlastX LTR_Gypsy 185377 185901 488 - . . scaffold474 flankbed promoter 185266 185901 . - . ID=CGI_10007599; scaffold474 WUBlastX LTR_Gypsy 185266 185901 282 - . . scaffold474 flankbed promoter 184990 185901 . - . ID=CGI_10007599; scaffold474 WUBlastX LTR_Gypsy 184990 185901 145 - . . scaffold477 flankbed promoter 17384 17414 . + . ID=CGI_10012307; scaffold477 TRF Tandem_Repeat 17384 17414 62 + . . scaffold477 flankbed promoter 46308 46358 . + . ID=CGI_10012309; scaffold477 TRF Tandem_Repeat 46308 46358 102 + . . scaffold477 flankbed promoter 222536 222607 . - . ID=CGI_10012317; scaffold477 TRF Tandem_Repeat 222536 222607 144 + . . scaffold477 flankbed promoter 230103 230146 . - . ID=CGI_10012318; scaffold477 TRF Tandem_Repeat 230103 230146 88 + . . scaffold479 flankbed promoter 47720 47754 . - . ID=CGI_10015678; scaffold479 TRF Tandem_Repeat 47720 47754 70 + . . scaffold479 flankbed promoter 102223 102369 . - . ID=CGI_10015683; scaffold479 TRF Tandem_Repeat 102223 102517 310 + . . scaffold479 flankbed promoter 107582 107627 . - . ID=CGI_10015684; scaffold479 TRF Tandem_Repeat 107582 107627 92 + . . scaffold479 flankbed promoter 266141 266606 . + . ID=CGI_10015697; scaffold479 TRF Tandem_Repeat 265834 266606 1093 + . . scaffold479 flankbed promoter 323508 323548 . - . ID=CGI_10015700; scaffold479 TRF Tandem_Repeat 323508 323548 82 + . . scaffold48 flankbed promoter 224006 224156 . + . ID=CGI_10023887; scaffold48 TRF Tandem_Repeat 223383 224156 1163 + . . scaffold48 flankbed promoter 224313 224381 . + . ID=CGI_10023887; scaffold48 TRF Tandem_Repeat 224313 224381 111 + . . scaffold48 flankbed promoter 611434 611840 . + . ID=CGI_10023910; scaffold48 TRF Tandem_Repeat 610835 611840 874 + . . scaffold48 flankbed promoter 611434 611843 . + . ID=CGI_10023910; scaffold48 TRF Tandem_Repeat 610835 611843 924 + . . scaffold48 flankbed promoter 611434 611854 . + . ID=CGI_10023910; scaffold48 TRF Tandem_Repeat 611067 611854 541 + . . scaffold48 flankbed promoter 760489 760779 . - . ID=CGI_10023916; scaffold48 WUBlastX LTR_Gypsy 760489 760779 64 + . . scaffold48 flankbed promoter 760489 760779 . + . ID=CGI_10023917; scaffold48 WUBlastX LTR_Gypsy 760489 760779 64 + . . scaffold48 flankbed promoter 775020 775103 . + . ID=CGI_10023918; scaffold48 WUBlastX LTR_Foamy 775020 775103 31 - . . scaffold48 flankbed promoter 774325 774453 . + . ID=CGI_10023918; scaffold48 WUBlastX LTR_Gypsy 774325 774453 28 - . . scaffold48 flankbed promoter 774304 774387 . + . ID=CGI_10023918; scaffold48 WUBlastX LTR_Gypsy 774304 774387 22 - . . scaffold48 flankbed promoter 774257 774292 . + . ID=CGI_10023918; scaffold48 WUBlastX LTR_Gypsy 773072 774292 310 - . . scaffold48 flankbed promoter 857540 857600 . + . ID=CGI_10023923; scaffold48 TRF Tandem_Repeat 857540 857600 122 + . . scaffold481 flankbed promoter 197820 197863 . + . ID=CGI_10027201; scaffold481 TRF Tandem_Repeat 197820 197863 52 + . . scaffold481 flankbed promoter 224449 224450 . - . ID=CGI_10027202; scaffold481 WUBlastX LTR_Gypsy-Cigr 224449 224847 164 - . . scaffold481 flankbed promoter 650153 650313 . + . ID=CGI_10027231; scaffold481 TRF Tandem_Repeat 650153 650313 254 + . . scaffold481 flankbed promoter 830206 830253 . + . ID=CGI_10027247; scaffold481 TRF Tandem_Repeat 830202 830253 104 + . . scaffold481 flankbed promoter 894529 894560 . + . ID=CGI_10027252; scaffold481 TRF Tandem_Repeat 894529 894560 64 + . . scaffold481 flankbed promoter 1041675 1041860 . - . ID=CGI_10027258; scaffold481 WUBlastX LINE_RTE-X 1041675 1041860 73 + . . scaffold481 flankbed promoter 1041609 1041929 . - . ID=CGI_10027258; scaffold481 WUBlastX LINE_RTE-X 1041609 1041929 51 + . . scaffold481 flankbed promoter 1041675 1041908 . - . ID=CGI_10027258; scaffold481 WUBlastX LINE_RTE-X 1041675 1041908 67 + . . scaffold481 flankbed promoter 1090102 1090154 . - . ID=CGI_10027262; scaffold481 TRF Tandem_Repeat 1090102 1090154 106 + . . scaffold482 flankbed promoter 42957 43417 . + . ID=CGI_10010993; scaffold482 WUBlastX DNA_Kolobok-Hyd 42374 43417 36 + . . scaffold482 flankbed promoter 105907 105990 . - . ID=CGI_10010995; scaffold482 TRF Tandem_Repeat 105907 105990 116 + . . scaffold482 flankbed promoter 105907 105990 . + . ID=CGI_10010996; scaffold482 TRF Tandem_Repeat 105907 105990 116 + . . scaffold483 flankbed promoter 10074 10271 . + . ID=CGI_10007746; scaffold483 WUBlastX DNA_Harbinger 10074 10271 65 - . . scaffold483 flankbed promoter 9744 9863 . + . ID=CGI_10007746; scaffold483 WUBlastX DNA_Harbinger 9744 9863 47 - . . scaffold483 flankbed promoter 10074 10193 . + . ID=CGI_10007746; scaffold483 WUBlastX DNA_Harbinger 10074 10193 126 - . . scaffold483 flankbed promoter 10035 10196 . + . ID=CGI_10007746; scaffold483 WUBlastX DNA_Harbinger 10035 10196 99 - . . scaffold483 flankbed promoter 96016 96216 . - . ID=CGI_10007748; scaffold483 WUBlastX DNA_TcMar-Marin 96016 96216 43 - . . scaffold485 flankbed promoter 123160 123216 . - . ID=CGI_10024145; scaffold485 WUBlastX DNA_hAT 121678 123216 274 - . . scaffold485 flankbed promoter 426042 426089 . + . ID=CGI_10024166; scaffold485 TRF Tandem_Repeat 426042 426089 96 + . . scaffold485 flankbed promoter 492581 492925 . + . ID=CGI_10024170; scaffold485 WUBlastX LINE_L1-Tx1 492581 492925 41 + . . scaffold485 flankbed promoter 513017 513632 . + . ID=CGI_10024171; scaffold485 TRF Tandem_Repeat 513017 513632 794 + . . scaffold485 flankbed promoter 513017 513632 . + . ID=CGI_10024171; scaffold485 TRF Tandem_Repeat 513017 513632 821 + . . scaffold485 flankbed promoter 517957 518047 . + . ID=CGI_10024172; scaffold485 TRF Tandem_Repeat 517957 518047 110 + . . scaffold485 flankbed promoter 609725 609759 . - . ID=CGI_10024180; scaffold485 TRF Tandem_Repeat 609725 609759 70 + . . scaffold485 flankbed promoter 770218 770247 . + . ID=CGI_10024194; scaffold485 TRF Tandem_Repeat 770218 770247 60 + . . scaffold485 flankbed promoter 847712 847761 . + . ID=CGI_10024197; scaffold485 TRF Tandem_Repeat 847712 847761 100 + . . scaffold485 flankbed promoter 874047 874250 . - . ID=CGI_10024199; scaffold485 WUBlastX LINE_L1 874047 874301 82 - . . scaffold485 flankbed promoter 874098 874250 . - . ID=CGI_10024199; scaffold485 WUBlastX LINE_L1 874098 874304 143 - . . scaffold485 flankbed promoter 874086 874250 . - . ID=CGI_10024199; scaffold485 WUBlastX LINE_L1 874086 874349 68 - . . scaffold487 flankbed promoter 447136 447177 . - . ID=CGI_10017054; scaffold487 WUBlastX DNA_P 447013 447177 26 - . . scaffold487 flankbed promoter 447291 447482 . - . ID=CGI_10017054; scaffold487 WUBlastX DNA_P 447291 447482 39 - . . scaffold487 flankbed promoter 475048 475605 . + . ID=CGI_10017055; scaffold487 WUBlastX DNA_IS4EU 475033 475605 65 + . . scaffold488 flankbed promoter 88299 88358 . - . ID=CGI_10005409; scaffold488 WUBlastX LTR_Copia 88299 88358 38 - . . scaffold488 flankbed promoter 88560 89225 . - . ID=CGI_10005409; scaffold488 WUBlastX LTR_Gypsy 88560 91859 1905 - . . scaffold488 flankbed promoter 88332 89225 . - . ID=CGI_10005409; scaffold488 WUBlastX LTR_Gypsy 88332 89816 480 - . . scaffold488 flankbed promoter 92993 93002 . + . ID=CGI_10005410; scaffold488 WUBlastX LTR_Gypsy-Cigr 92457 93002 179 - . . scaffold488 flankbed promoter 107956 108007 . - . ID=CGI_10005411; scaffold488 TRF Tandem_Repeat 107956 108007 54 + . . scaffold488 flankbed promoter 107953 108014 . - . ID=CGI_10005411; scaffold488 TRF Tandem_Repeat 107953 108014 53 + . . scaffold489 flankbed promoter 280376 280468 . - . ID=CGI_10020237; scaffold489 TRF Tandem_Repeat 280376 280468 168 + . . scaffold489 flankbed promoter 280376 280468 . + . ID=CGI_10020238; scaffold489 TRF Tandem_Repeat 280376 280468 168 + . . scaffold489 flankbed promoter 349265 349289 . - . ID=CGI_10020241; scaffold489 TRF Tandem_Repeat 349265 349289 50 + . . scaffold489 flankbed promoter 386971 386996 . + . ID=CGI_10020248; scaffold489 WUBlastX LINE_RTE-X 386874 386996 70 - . . scaffold489 flankbed promoter 574943 575039 . - . ID=CGI_10020253; scaffold489 TRF Tandem_Repeat 574943 575039 90 + . . scaffold489 flankbed promoter 588290 589226 . - . ID=CGI_10020254; scaffold489 WUBlastX LTR_Gypsy 588290 589531 1109 - . . scaffold49 flankbed promoter 182147 182188 . + . ID=CGI_10013283; scaffold49 TRF Tandem_Repeat 182147 182188 84 + . . scaffold49 flankbed promoter 295978 296052 . - . ID=CGI_10013286; scaffold49 TRF Tandem_Repeat 295978 296052 150 + . . scaffold49 flankbed promoter 286931 286978 . + . ID=CGI_10013288; scaffold49 TRF Tandem_Repeat 286931 286978 87 + . . scaffold491 flankbed promoter 106150 106201 . - . ID=CGI_10006655; scaffold491 TRF Tandem_Repeat 106150 106201 104 + . . scaffold492 flankbed promoter 40488 40545 . - . ID=CGI_10024808; scaffold492 TRF Tandem_Repeat 40488 40545 98 + . . scaffold492 flankbed promoter 113833 114832 . - . ID=CGI_10024810; scaffold492 WUBlastX LTR_Gypsy-Troyk 113626 115584 1085 - . . scaffold492 flankbed promoter 356216 356265 . + . ID=CGI_10024828; scaffold492 TRF Tandem_Repeat 356216 356265 84 + . . scaffold492 flankbed promoter 537455 537480 . + . ID=CGI_10024844; scaffold492 TRF Tandem_Repeat 537455 537480 52 + . . scaffold492 flankbed promoter 614531 615319 . - . ID=CGI_10024849; scaffold492 WUBlastX LINE_RTE-X 614438 615319 99 - . . scaffold492 flankbed promoter 624147 624204 . + . ID=CGI_10024850; scaffold492 TRF Tandem_Repeat 624147 624204 62 + . . scaffold492 flankbed promoter 624138 624204 . + . ID=CGI_10024850; scaffold492 TRF Tandem_Repeat 624138 624204 134 + . . scaffold492 flankbed promoter 648392 648452 . + . ID=CGI_10024851; scaffold492 TRF Tandem_Repeat 648392 648452 122 + . . scaffold492 flankbed promoter 783303 783332 . + . ID=CGI_10024864; scaffold492 TRF Tandem_Repeat 783303 783332 60 + . . scaffold492 flankbed promoter 799220 799444 . - . ID=CGI_10024865; scaffold492 WUBlastX DNA_IS4EU 798434 799444 742 - . . scaffold492 flankbed promoter 890347 890913 . + . ID=CGI_10024873; scaffold492 TRF Tandem_Repeat 890130 890913 294 + . . scaffold492 flankbed promoter 898604 898798 . + . ID=CGI_10024874; scaffold492 TRF Tandem_Repeat 898604 898798 291 + . . scaffold493 flankbed promoter 19233 19283 . + . ID=CGI_10007244; scaffold493 TRF Tandem_Repeat 19142 19283 214 + . . scaffold493 flankbed promoter 158252 158307 . + . ID=CGI_10007250; scaffold493 TRF Tandem_Repeat 158252 158307 112 + . . scaffold496 flankbed promoter 27121 27163 . + . ID=CGI_10022431; scaffold496 TRF Tandem_Repeat 27121 27163 86 + . . scaffold496 flankbed promoter 118154 118191 . - . ID=CGI_10022442; scaffold496 TRF Tandem_Repeat 118154 118191 76 + . . scaffold496 flankbed promoter 179346 179386 . + . ID=CGI_10022447; scaffold496 TRF Tandem_Repeat 179346 179386 82 + . . scaffold496 flankbed promoter 266653 266859 . - . ID=CGI_10022448; scaffold496 WUBlastX DNA_hAT 266395 266859 73 + . . scaffold496 flankbed promoter 573767 573826 . + . ID=CGI_10022465; scaffold496 TRF Tandem_Repeat 573767 573826 120 + . . scaffold496 flankbed promoter 597331 597358 . + . ID=CGI_10022466; scaffold496 TRF Tandem_Repeat 597263 597358 84 + . . scaffold496 flankbed promoter 597796 597825 . + . ID=CGI_10022466; scaffold496 TRF Tandem_Repeat 597796 597825 53 + . . scaffold498 flankbed promoter 119251 119305 . - . ID=CGI_10012422; scaffold498 TRF Tandem_Repeat 119251 119305 69 + . . scaffold498 flankbed promoter 137428 137453 . + . ID=CGI_10012424; scaffold498 TRF Tandem_Repeat 137428 137453 52 + . . scaffold498 flankbed promoter 194916 194961 . - . ID=CGI_10012428; scaffold498 TRF Tandem_Repeat 194916 194961 92 + . . scaffold498 flankbed promoter 204870 204903 . + . ID=CGI_10012429; scaffold498 TRF Tandem_Repeat 204870 204903 68 + . . scaffold499 flankbed promoter 77083 77118 . + . ID=CGI_10015762; scaffold499 TRF Tandem_Repeat 77083 77118 72 + . . scaffold499 flankbed promoter 88583 88641 . + . ID=CGI_10015763; scaffold499 TRF Tandem_Repeat 88583 88641 118 + . . scaffold499 flankbed promoter 390992 391035 . + . ID=CGI_10015776; scaffold499 TRF Tandem_Repeat 390989 391035 94 + . . scaffold5 flankbed promoter 315036 315761 . + . ID=CGI_10012935; scaffold5 WUBlastX LINE_CR1 315036 315761 237 + . . scaffold50 flankbed promoter 48646 48690 . + . ID=CGI_10009092; scaffold50 TRF Tandem_Repeat 48646 48690 90 + . . scaffold500 flankbed promoter 42080 42199 . + . ID=CGI_10008713; scaffold500 TRF Tandem_Repeat 42080 42199 170 + . . scaffold500 flankbed promoter 42080 42221 . + . ID=CGI_10008713; scaffold500 TRF Tandem_Repeat 42080 42221 137 + . . scaffold500 flankbed promoter 41769 42008 . + . ID=CGI_10008713; scaffold500 WUBlastX LINE_L2 41751 42008 35 + . . scaffold500 flankbed promoter 197240 197285 . - . ID=CGI_10008721; scaffold500 TRF Tandem_Repeat 197240 197285 92 + . . scaffold501 flankbed promoter 147800 147852 . + . ID=CGI_10027501; scaffold501 TRF Tandem_Repeat 147800 147852 106 + . . scaffold501 flankbed promoter 231019 231057 . + . ID=CGI_10027506; scaffold501 TRF Tandem_Repeat 231019 231057 69 + . . scaffold501 flankbed promoter 267425 267967 . + . ID=CGI_10027511; scaffold501 WUBlastX LINE_L1-Tx1 267425 268126 73 + . . scaffold501 flankbed promoter 267560 267967 . + . ID=CGI_10027511; scaffold501 WUBlastX LINE_L2 267560 268126 87 + . . scaffold501 flankbed promoter 267398 267967 . + . ID=CGI_10027511; scaffold501 WUBlastX LINE_L1 267398 268228 24 + . . scaffold501 flankbed promoter 530926 530951 . - . ID=CGI_10027525; scaffold501 WUBlastX LINE_RTE-X 530926 533037 977 - . . scaffold501 flankbed promoter 580786 580819 . - . ID=CGI_10027527; scaffold501 TRF Tandem_Repeat 580786 580819 50 + . . scaffold501 flankbed promoter 580926 581307 . - . ID=CGI_10027527; scaffold501 WUBlastX LINE_RTE-X 580926 581732 194 - . . scaffold501 flankbed promoter 761738 762041 . - . ID=CGI_10027530; scaffold501 TRF Tandem_Repeat 761738 762041 349 + . . scaffold501 flankbed promoter 761730 761866 . - . ID=CGI_10027530; scaffold501 TRF Tandem_Repeat 761730 761866 91 + . . scaffold501 flankbed promoter 761872 762004 . - . ID=CGI_10027530; scaffold501 TRF Tandem_Repeat 761872 762004 76 + . . scaffold501 flankbed promoter 857034 857125 . + . ID=CGI_10027532; scaffold501 TRF Tandem_Repeat 857034 857125 170 + . . scaffold501 flankbed promoter 882072 882117 . + . ID=CGI_10027534; scaffold501 TRF Tandem_Repeat 882072 882117 92 + . . scaffold501 flankbed promoter 970432 970473 . + . ID=CGI_10027539; scaffold501 TRF Tandem_Repeat 970432 970473 66 + . . scaffold501 flankbed promoter 970545 970594 . + . ID=CGI_10027539; scaffold501 TRF Tandem_Repeat 970545 970594 91 + . . scaffold501 flankbed promoter 1047356 1047382 . - . ID=CGI_10027540; scaffold501 TRF Tandem_Repeat 1047356 1047382 54 + . . scaffold501 flankbed promoter 1047544 1048158 . - . ID=CGI_10027540; scaffold501 WUBlastX LINE_RTE-X 1047544 1048293 66 - . . scaffold501 flankbed promoter 1047664 1048158 . - . ID=CGI_10027540; scaffold501 WUBlastX LINE_RTE-X 1047664 1049442 931 - . . scaffold501 flankbed promoter 1275737 1275764 . + . ID=CGI_10027547; scaffold501 TRF Tandem_Repeat 1275669 1275764 84 + . . scaffold501 flankbed promoter 1276202 1276231 . + . ID=CGI_10027547; scaffold501 TRF Tandem_Repeat 1276202 1276231 53 + . . scaffold502 flankbed promoter 227456 227554 . + . ID=CGI_10024317; scaffold502 WUBlastX LINE_RTE-X 227393 227554 46 - . . scaffold502 flankbed promoter 227456 227548 . + . ID=CGI_10024317; scaffold502 WUBlastX LINE_RTE-X 227330 227548 21 - . . scaffold502 flankbed promoter 329695 329760 . - . ID=CGI_10024323; scaffold502 TRF Tandem_Repeat 329695 329760 132 + . . scaffold504 flankbed promoter 243824 243922 . - . ID=CGI_10016027; scaffold504 TRF Tandem_Repeat 243824 243922 51 + . . scaffold506 flankbed promoter 75096 75126 . - . ID=CGI_10019254; scaffold506 TRF Tandem_Repeat 75096 75126 62 + . . scaffold506 flankbed promoter 521926 522030 . + . ID=CGI_10019280; scaffold506 WUBlastX LTR_DIRS 521926 522030 52 + . . scaffold506 flankbed promoter 522011 522444 . + . ID=CGI_10019280; scaffold506 WUBlastX LTR_DIRS 522011 522730 385 + . . scaffold506 flankbed promoter 521887 522024 . + . ID=CGI_10019280; scaffold506 WUBlastX LTR_DIRS 521887 522024 45 + . . scaffold507 flankbed promoter 379020 379074 . + . ID=CGI_10019099; scaffold507 TRF Tandem_Repeat 379020 379074 110 + . . scaffold507 flankbed promoter 491074 492045 . + . ID=CGI_10019104; scaffold507 WUBlastX DNA_Academ 491074 492339 405 + . . scaffold507 flankbed promoter 491046 492042 . + . ID=CGI_10019104; scaffold507 WUBlastX DNA_Academ 490849 492042 460 + . . scaffold507 flankbed promoter 492336 492542 . + . ID=CGI_10019105; scaffold507 WUBlastX DNA_Academ 492336 492542 35 + . . scaffold507 flankbed promoter 492548 492574 . + . ID=CGI_10019105; scaffold507 WUBlastX DNA_Academ 492548 493906 632 + . . scaffold507 flankbed promoter 491575 492339 . + . ID=CGI_10019105; scaffold507 WUBlastX DNA_Academ 491074 492339 405 + . . scaffold507 flankbed promoter 491575 492042 . + . ID=CGI_10019105; scaffold507 WUBlastX DNA_Academ 490849 492042 460 + . . scaffold509 flankbed promoter 516294 516365 . + . ID=CGI_10018661; scaffold509 TRF Tandem_Repeat 516294 516365 144 + . . scaffold510 flankbed promoter 361838 361907 . - . ID=CGI_10013775; scaffold510 TRF Tandem_Repeat 361838 361907 63 + . . scaffold510 flankbed promoter 362155 362241 . - . ID=CGI_10013775; scaffold510 TRF Tandem_Repeat 362155 362241 63 + . . scaffold510 flankbed promoter 362221 362330 . - . ID=CGI_10013775; scaffold510 TRF Tandem_Repeat 362221 362339 139 + . . scaffold513 flankbed promoter 157047 157331 . - . ID=CGI_10022138; scaffold513 WUBlastX DNA_IS4EU 157047 157331 20 - . . scaffold513 flankbed promoter 156858 156875 . - . ID=CGI_10022138; scaffold513 WUBlastX DNA_IS4EU 156696 156875 71 - . . scaffold513 flankbed promoter 157525 157662 . - . ID=CGI_10022138; scaffold513 WUBlastX DNA_IS4EU 157525 157662 21 - . . scaffold513 flankbed promoter 156858 156899 . - . ID=CGI_10022138; scaffold513 WUBlastX DNA_IS4EU 156684 156899 46 - . . scaffold513 flankbed promoter 156987 157124 . - . ID=CGI_10022138; scaffold513 WUBlastX DNA_IS4EU 156987 157124 77 - . . scaffold513 flankbed promoter 608675 608704 . - . ID=CGI_10022172; scaffold513 TRF Tandem_Repeat 608675 608748 148 + . . scaffold513 flankbed promoter 608675 608748 . + . ID=CGI_10022173; scaffold513 TRF Tandem_Repeat 608675 608748 148 + . . scaffold514 flankbed promoter 191442 191492 . + . ID=CGI_10018349; scaffold514 TRF Tandem_Repeat 191442 191492 102 + . . scaffold514 flankbed promoter 278213 278354 . - . ID=CGI_10018355; scaffold514 TRF Tandem_Repeat 278213 278354 102 + . . scaffold514 flankbed promoter 348972 349010 . - . ID=CGI_10018360; scaffold514 TRF Tandem_Repeat 348972 349010 78 + . . scaffold514 flankbed promoter 361323 361569 . - . ID=CGI_10018361; scaffold514 TRF Tandem_Repeat 361323 361569 356 + . . scaffold514 flankbed promoter 384553 384592 . + . ID=CGI_10018362; scaffold514 TRF Tandem_Repeat 384553 384592 80 + . . scaffold517 flankbed promoter 25711 26416 . + . ID=CGI_10008977; scaffold517 WUBlastX DNA_IS4EU 24908 26416 284 - . . scaffold517 flankbed promoter 216965 217234 . - . ID=CGI_10008985; scaffold517 WUBlastX DNA_Maverick 216965 217234 85 + . . scaffold517 flankbed promoter 217344 217430 . - . ID=CGI_10008985; scaffold517 WUBlastX DNA_Maverick 217344 217430 47 + . . scaffold517 flankbed promoter 216986 217210 . - . ID=CGI_10008985; scaffold517 WUBlastX DNA_Maverick 216986 217210 108 + . . scaffold517 flankbed promoter 217436 217741 . - . ID=CGI_10008985; scaffold517 WUBlastX DNA_Maverick 217436 217741 90 + . . scaffold520 flankbed promoter 25634 25645 . + . ID=CGI_10010951; scaffold520 WUBlastX LINE_L1-Tx1 25634 26200 62 + . . scaffold520 flankbed promoter 25547 25645 . + . ID=CGI_10010951; scaffold520 WUBlastX LINE_L1 25547 26047 23 + . . scaffold520 flankbed promoter 123723 124166 . - . ID=CGI_10010952; scaffold520 WUBlastX LINE_Penelope 123723 124493 158 - . . scaffold520 flankbed promoter 209781 209818 . - . ID=CGI_10010956; scaffold520 TRF Tandem_Repeat 209781 209818 67 + . . scaffold522 flankbed promoter 21797 21848 . + . ID=CGI_10020307; scaffold522 TRF Tandem_Repeat 21797 21848 104 + . . scaffold522 flankbed promoter 219874 219918 . + . ID=CGI_10020320; scaffold522 TRF Tandem_Repeat 219874 219918 90 + . . scaffold522 flankbed promoter 471312 471361 . + . ID=CGI_10020332; scaffold522 TRF Tandem_Repeat 471312 471361 100 + . . scaffold522 flankbed promoter 501056 501088 . - . ID=CGI_10020333; scaffold522 TRF Tandem_Repeat 501056 501088 50 + . . scaffold522 flankbed promoter 523197 523460 . + . ID=CGI_10020335; scaffold522 TRF Tandem_Repeat 523197 523460 138 + . . scaffold522 flankbed promoter 523192 523377 . + . ID=CGI_10020335; scaffold522 TRF Tandem_Repeat 523192 523377 93 + . . scaffold522 flankbed promoter 523197 523429 . + . ID=CGI_10020335; scaffold522 TRF Tandem_Repeat 523197 523429 241 + . . scaffold524 flankbed promoter 25003 25073 . + . ID=CGI_10016596; scaffold524 TRF Tandem_Repeat 25003 25073 90 + . . scaffold524 flankbed promoter 53246 53512 . - . ID=CGI_10016597; scaffold524 WUBlastX DNA_Academ 52988 53512 81 - . . scaffold524 flankbed promoter 53246 53467 . - . ID=CGI_10016597; scaffold524 WUBlastX DNA_Academ 53042 53467 181 - . . scaffold524 flankbed promoter 121418 122290 . - . ID=CGI_10016599; scaffold524 TRF Tandem_Repeat 121418 122973 2237 + . . scaffold524 flankbed promoter 138925 138965 . + . ID=CGI_10016600; scaffold524 TRF Tandem_Repeat 138925 138965 82 + . . scaffold524 flankbed promoter 159556 159749 . - . ID=CGI_10016601; scaffold524 TRF Tandem_Repeat 159556 159915 288 + . . scaffold524 flankbed promoter 159556 159749 . - . ID=CGI_10016601; scaffold524 TRF Tandem_Repeat 159556 160334 389 + . . scaffold524 flankbed promoter 159568 159749 . - . ID=CGI_10016601; scaffold524 TRF Tandem_Repeat 159568 160334 521 + . . scaffold524 flankbed promoter 444295 444333 . + . ID=CGI_10016612; scaffold524 TRF Tandem_Repeat 444293 444333 75 + . . scaffold525 flankbed promoter 178028 178366 . + . ID=CGI_10008576; scaffold525 TRF Tandem_Repeat 178028 178366 351 + . . scaffold525 flankbed promoter 178028 178366 . + . ID=CGI_10008576; scaffold525 TRF Tandem_Repeat 178028 178366 368 + . . scaffold525 flankbed promoter 178028 178366 . + . ID=CGI_10008576; scaffold525 TRF Tandem_Repeat 178028 178366 415 + . . scaffold527 flankbed promoter 118208 118467 . - . ID=CGI_10015977; scaffold527 TRF Tandem_Repeat 118208 118467 315 + . . scaffold527 flankbed promoter 118235 118493 . - . ID=CGI_10015977; scaffold527 TRF Tandem_Repeat 118235 118493 305 + . . scaffold53 flankbed promoter 68475 68527 . + . ID=CGI_10026649; scaffold53 TRF Tandem_Repeat 68475 68527 52 + . . scaffold53 flankbed promoter 399885 400058 . - . ID=CGI_10026660; scaffold53 WUBlastX DNA_Maverick 399885 400058 78 - . . scaffold53 flankbed promoter 400024 400389 . - . ID=CGI_10026660; scaffold53 WUBlastX DNA_Maverick 400024 400740 223 - . . scaffold53 flankbed promoter 400024 400389 . - . ID=CGI_10026660; scaffold53 WUBlastX DNA_Maverick 400024 400605 353 - . . scaffold53 flankbed promoter 399891 400001 . - . ID=CGI_10026660; scaffold53 WUBlastX DNA_Maverick 399891 400001 98 - . . scaffold53 flankbed promoter 400024 400389 . - . ID=CGI_10026660; scaffold53 WUBlastX DNA_Maverick 400024 400869 124 - . . scaffold53 flankbed promoter 521198 521235 . + . ID=CGI_10026669; scaffold53 TRF Tandem_Repeat 521198 521235 76 + . . scaffold53 flankbed promoter 695552 695761 . + . ID=CGI_10026680; scaffold53 TRF Tandem_Repeat 695552 695761 221 + . . scaffold53 flankbed promoter 695544 695785 . + . ID=CGI_10026680; scaffold53 TRF Tandem_Repeat 695544 695785 308 + . . scaffold53 flankbed promoter 711690 712159 . - . ID=CGI_10026681; scaffold53 TRF Tandem_Repeat 711028 712159 1967 + . . scaffold53 flankbed promoter 969335 969401 . - . ID=CGI_10026693; scaffold53 TRF Tandem_Repeat 969335 969401 134 + . . scaffold53 flankbed promoter 1090124 1090160 . + . ID=CGI_10026698; scaffold53 TRF Tandem_Repeat 1090124 1090160 65 + . . scaffold53 flankbed promoter 1153714 1153727 . + . ID=CGI_10026702; scaffold53 WUBlastX LINE_I 1153635 1153727 24 - . . scaffold53 flankbed promoter 1176691 1176736 . + . ID=CGI_10026703; scaffold53 TRF Tandem_Repeat 1176691 1176736 92 + . . scaffold53 flankbed promoter 1177548 1177610 . + . ID=CGI_10026703; scaffold53 WUBlastX DNA_En-Spm 1177548 1177637 20 + . . scaffold532 flankbed promoter 24401 24609 . - . ID=CGI_10012519; scaffold532 TRF Tandem_Repeat 24401 24609 193 + . . scaffold532 flankbed promoter 40596 40640 . + . ID=CGI_10012520; scaffold532 TRF Tandem_Repeat 40596 40640 72 + . . scaffold532 flankbed promoter 188915 189008 . + . ID=CGI_10012532; scaffold532 TRF Tandem_Repeat 188915 189008 52 + . . scaffold532 flankbed promoter 188899 189165 . + . ID=CGI_10012532; scaffold532 TRF Tandem_Repeat 188899 189165 435 + . . scaffold534 flankbed promoter 8160 8209 . - . ID=CGI_10005162; scaffold534 TRF Tandem_Repeat 8160 8209 100 + . . scaffold534 flankbed promoter 8497 8569 . - . ID=CGI_10005162; scaffold534 TRF Tandem_Repeat 8497 8569 116 + . . scaffold534 flankbed promoter 67151 67840 . - . ID=CGI_10005165; scaffold534 WUBlastX LTR_ERV1 67151 67840 97 - . . scaffold534 flankbed promoter 67906 68072 . - . ID=CGI_10005165; scaffold534 WUBlastX LTR_Gypsy 67906 68277 68 - . . scaffold534 flankbed promoter 67864 68072 . - . ID=CGI_10005165; scaffold534 WUBlastX LTR_Gypsy 67864 68220 113 - . . scaffold534 flankbed promoter 67870 68072 . - . ID=CGI_10005165; scaffold534 WUBlastX LTR_Gypsy-Cigr 67870 68166 214 - . . scaffold534 flankbed promoter 67262 67864 . - . ID=CGI_10005165; scaffold534 WUBlastX LTR_Gypsy 67262 67864 341 - . . scaffold535 flankbed promoter 41312 41452 . - . ID=CGI_10020281; scaffold535 WUBlastX LINE_L1 41312 41452 21 + . . scaffold535 flankbed promoter 41381 41729 . - . ID=CGI_10020281; scaffold535 WUBlastX LINE_L1-Tx1 41381 44806 886 + . . scaffold535 flankbed promoter 296980 297029 . - . ID=CGI_10020289; scaffold535 TRF Tandem_Repeat 296980 297029 73 + . . scaffold535 flankbed promoter 327301 327343 . + . ID=CGI_10020290; scaffold535 TRF Tandem_Repeat 327301 327343 50 + . . scaffold535 flankbed promoter 327284 327344 . + . ID=CGI_10020290; scaffold535 TRF Tandem_Repeat 327284 327344 67 + . . scaffold535 flankbed promoter 562307 562339 . + . ID=CGI_10020300; scaffold535 TRF Tandem_Repeat 562307 562339 57 + . . scaffold536 flankbed promoter 24673 24724 . + . ID=CGI_10006666; scaffold536 TRF Tandem_Repeat 24673 24724 104 + . . scaffold536 flankbed promoter 46969 47005 . - . ID=CGI_10006667; scaffold536 TRF Tandem_Repeat 46969 47005 74 + . . scaffold536 flankbed promoter 68697 68736 . - . ID=CGI_10006669; scaffold536 TRF Tandem_Repeat 68697 68736 80 + . . scaffold536 flankbed promoter 118126 118839 . - . ID=CGI_10006673; scaffold536 WUBlastX LINE_Penelope 118126 118839 204 - . . scaffold54 flankbed promoter 208296 208320 . + . ID=CGI_10023665; scaffold54 TRF Tandem_Repeat 208296 208320 50 + . . scaffold54 flankbed promoter 702381 702406 . + . ID=CGI_10023691; scaffold54 TRF Tandem_Repeat 702381 702406 52 + . . scaffold54 flankbed promoter 752407 752449 . + . ID=CGI_10023694; scaffold54 TRF Tandem_Repeat 752407 752449 86 + . . scaffold54 flankbed promoter 752802 752910 . + . ID=CGI_10023694; scaffold54 TRF Tandem_Repeat 752802 752910 159 + . . scaffold54 flankbed promoter 761780 762058 . + . ID=CGI_10023695; scaffold54 WUBlastX LINE_Penelope 761780 762058 68 + . . scaffold54 flankbed promoter 761654 762010 . + . ID=CGI_10023695; scaffold54 WUBlastX LINE_Penelope 761654 762010 40 + . . scaffold541 flankbed promoter 65985 66052 . - . ID=CGI_10022375; scaffold541 TRF Tandem_Repeat 65985 66052 52 + . . scaffold541 flankbed promoter 66004 66059 . - . ID=CGI_10022375; scaffold541 TRF Tandem_Repeat 66004 66059 76 + . . scaffold541 flankbed promoter 80306 80366 . - . ID=CGI_10022376; scaffold541 TRF Tandem_Repeat 80306 80366 113 + . . scaffold541 flankbed promoter 80366 80400 . - . ID=CGI_10022376; scaffold541 TRF Tandem_Repeat 80366 80400 61 + . . scaffold541 flankbed promoter 81723 81790 . - . ID=CGI_10022377; scaffold541 TRF Tandem_Repeat 81723 81790 136 + . . scaffold541 flankbed promoter 106011 106055 . + . ID=CGI_10022378; scaffold541 WUBlastX LINE_L1 106011 106652 43 + . . scaffold541 flankbed promoter 132833 133147 . + . ID=CGI_10022379; scaffold541 WUBlastX LTR_Gypsy 132833 133147 120 - . . scaffold541 flankbed promoter 243428 243457 . + . ID=CGI_10022381; scaffold541 TRF Tandem_Repeat 243428 243457 60 + . . scaffold541 flankbed promoter 262217 262480 . - . ID=CGI_10022382; scaffold541 WUBlastX LINE_L2 262217 262480 31 + . . scaffold541 flankbed promoter 601981 602231 . + . ID=CGI_10022402; scaffold541 WUBlastX LTR_Gypsy-Cigr 601980 602231 228 + . . scaffold541 flankbed promoter 601995 602453 . + . ID=CGI_10022402; scaffold541 WUBlastX LTR_Gypsy 601995 602453 127 + . . scaffold541 flankbed promoter 602315 602719 . + . ID=CGI_10022402; scaffold541 WUBlastX LTR_Gypsy 602315 602719 129 + . . scaffold541 flankbed promoter 709048 709088 . - . ID=CGI_10022407; scaffold541 TRF Tandem_Repeat 709048 709088 73 + . . scaffold541 flankbed promoter 709266 709301 . - . ID=CGI_10022407; scaffold541 TRF Tandem_Repeat 709266 709301 72 + . . scaffold542 flankbed promoter 19122 19153 . - . ID=CGI_10014754; scaffold542 TRF Tandem_Repeat 19122 19153 64 + . . scaffold542 flankbed promoter 58563 58615 . - . ID=CGI_10014756; scaffold542 TRF Tandem_Repeat 58563 58615 106 + . . scaffold542 flankbed promoter 97697 97731 . - . ID=CGI_10014759; scaffold542 TRF Tandem_Repeat 97697 97740 88 + . . scaffold542 flankbed promoter 176648 176707 . + . ID=CGI_10014765; scaffold542 TRF Tandem_Repeat 176648 176707 120 + . . scaffold544 flankbed promoter 201069 201236 . + . ID=CGI_10022552; scaffold544 TRF Tandem_Repeat 200559 201236 941 + . . scaffold544 flankbed promoter 499421 499484 . - . ID=CGI_10022566; scaffold544 TRF Tandem_Repeat 499421 499484 128 + . . scaffold544 flankbed promoter 516063 516234 . + . ID=CGI_10022569; scaffold544 TRF Tandem_Repeat 516063 516234 290 + . . scaffold544 flankbed promoter 533581 533696 . - . ID=CGI_10022570; scaffold544 TRF Tandem_Repeat 533581 533696 62 + . . scaffold544 flankbed promoter 643676 643713 . + . ID=CGI_10022578; scaffold544 TRF Tandem_Repeat 643676 643713 76 + . . scaffold544 flankbed promoter 721535 721714 . - . ID=CGI_10022582; scaffold544 WUBlastX LTR_Copia 721535 721714 59 - . . scaffold544 flankbed promoter 721682 722439 . - . ID=CGI_10022582; scaffold544 WUBlastX LTR_Gypsy-Cigr 721682 724771 2080 - . . scaffold544 flankbed promoter 722201 722439 . - . ID=CGI_10022582; scaffold544 WUBlastX LTR_Gypsy 722201 725755 579 - . . scaffold544 flankbed promoter 721613 721984 . - . ID=CGI_10022582; scaffold544 WUBlastX LTR_Gypsy 721613 721984 88 - . . scaffold544 flankbed promoter 749744 749779 . - . ID=CGI_10022583; scaffold544 TRF Tandem_Repeat 749744 749779 72 + . . scaffold544 flankbed promoter 762079 762104 . - . ID=CGI_10022584; scaffold544 TRF Tandem_Repeat 762079 762104 52 + . . scaffold546 flankbed promoter 251741 252571 . - . ID=CGI_10020999; scaffold546 WUBlastX LTR_Gypsy 251741 252571 57 - . . scaffold546 flankbed promoter 252086 252583 . - . ID=CGI_10020999; scaffold546 WUBlastX LTR_Gypsy 252086 252583 452 - . . scaffold546 flankbed promoter 530386 530425 . + . ID=CGI_10021008; scaffold546 TRF Tandem_Repeat 530386 530425 53 + . . scaffold546 flankbed promoter 530394 530425 . + . ID=CGI_10021008; scaffold546 TRF Tandem_Repeat 530394 530425 55 + . . scaffold546 flankbed promoter 644819 644886 . + . ID=CGI_10021019; scaffold546 TRF Tandem_Repeat 644819 644886 136 + . . scaffold547 flankbed promoter 176620 176654 . + . ID=CGI_10018846; scaffold547 TRF Tandem_Repeat 176620 176654 70 + . . scaffold547 flankbed promoter 205542 205569 . + . ID=CGI_10018847; scaffold547 TRF Tandem_Repeat 205542 205569 56 + . . scaffold549 flankbed promoter 8469 8565 . + . ID=CGI_10004101; scaffold549 WUBlastX LINE_RTE-X 8416 8565 26 - . . scaffold549 flankbed promoter 8469 8481 . + . ID=CGI_10004101; scaffold549 WUBlastX LINE_RTE-X 8416 8481 39 - . . scaffold549 flankbed promoter 8536 8565 . + . ID=CGI_10004101; scaffold549 WUBlastX LINE_RTE-X 8536 8565 29 - . . scaffold549 flankbed promoter 23693 23746 . - . ID=CGI_10004102; scaffold549 TRF Tandem_Repeat 23693 23746 108 + . . scaffold550 flankbed promoter 20177 20299 . - . ID=CGI_10012481; scaffold550 TRF Tandem_Repeat 20177 20299 97 + . . scaffold550 flankbed promoter 188245 188399 . - . ID=CGI_10012492; scaffold550 WUBlastX DNA_TcMar-Tc1 188245 188838 120 + . . scaffold550 flankbed promoter 188338 188399 . - . ID=CGI_10012492; scaffold550 WUBlastX DNA_TcMar-Tc1 188338 188850 141 + . . scaffold550 flankbed promoter 258245 258385 . - . ID=CGI_10012495; scaffold550 TRF Tandem_Repeat 258245 258385 84 + . . scaffold550 flankbed promoter 258059 258244 . - . ID=CGI_10012495; scaffold550 WUBlastX DNA_Academ 258059 258244 65 - . . scaffold550 flankbed promoter 257962 258024 . - . ID=CGI_10012495; scaffold550 WUBlastX DNA_Academ 257392 258024 275 - . . scaffold550 flankbed promoter 257962 258205 . - . ID=CGI_10012495; scaffold550 WUBlastX DNA_Academ 257957 258205 87 - . . scaffold550 flankbed promoter 260870 261124 . - . ID=CGI_10012496; scaffold550 WUBlastX DNA_Academ 260564 261124 350 - . . scaffold550 flankbed promoter 261168 261380 . - . ID=CGI_10012496; scaffold550 WUBlastX DNA_Academ 261168 261380 133 - . . scaffold550 flankbed promoter 260870 261139 . - . ID=CGI_10012496; scaffold550 WUBlastX DNA_Academ 260459 261139 231 - . . scaffold550 flankbed promoter 261385 261869 . - . ID=CGI_10012496; scaffold550 WUBlastX DNA_Academ 261385 262245 343 - . . scaffold552 flankbed promoter 69324 69548 . + . ID=CGI_10009321; scaffold552 WUBlastX LINE_L2 69324 69548 102 - . . scaffold556 flankbed promoter 2 517 . + . ID=CGI_10016788; scaffold556 WUBlastX LTR_Pao 2 1060 1028 + . . scaffold557 flankbed promoter 398839 398876 . - . ID=CGI_10017978; scaffold557 TRF Tandem_Repeat 398839 398876 60 + . . scaffold557 flankbed promoter 400528 400563 . + . ID=CGI_10017980; scaffold557 WUBlastX DNA_TcMar-Tigge 400312 400563 51 + . . scaffold560 flankbed promoter 176515 176563 . - . ID=CGI_10008756; scaffold560 TRF Tandem_Repeat 176515 176563 98 + . . scaffold560 flankbed promoter 176992 177208 . - . ID=CGI_10008756; scaffold560 TRF Tandem_Repeat 176992 177208 400 + . . scaffold562 flankbed promoter 90000 90205 . - . ID=CGI_10016076; scaffold562 TRF Tandem_Repeat 90000 90205 186 + . . scaffold562 flankbed promoter 90179 90357 . - . ID=CGI_10016076; scaffold562 TRF Tandem_Repeat 90179 90357 207 + . . scaffold562 flankbed promoter 90179 90357 . - . ID=CGI_10016076; scaffold562 TRF Tandem_Repeat 90179 90357 146 + . . scaffold562 flankbed promoter 101245 101288 . + . ID=CGI_10016077; scaffold562 TRF Tandem_Repeat 101245 101288 88 + . . scaffold562 flankbed promoter 130989 131224 . + . ID=CGI_10016079; scaffold562 TRF Tandem_Repeat 130989 131224 204 + . . scaffold562 flankbed promoter 199824 200069 . - . ID=CGI_10016082; scaffold562 WUBlastX LTR_Gypsy 199824 200069 54 - . . scaffold562 flankbed promoter 200095 200205 . - . ID=CGI_10016082; scaffold562 WUBlastX LTR_Gypsy 200095 200268 42 - . . scaffold562 flankbed promoter 199884 200069 . - . ID=CGI_10016082; scaffold562 WUBlastX LTR_Gypsy 199884 200069 75 - . . scaffold562 flankbed promoter 244944 245592 . - . ID=CGI_10016088; scaffold562 TRF Tandem_Repeat 244944 245776 1380 + . . scaffold562 flankbed promoter 280786 280888 . + . ID=CGI_10016091; scaffold562 TRF Tandem_Repeat 280786 280888 59 + . . scaffold562 flankbed promoter 280783 281038 . + . ID=CGI_10016091; scaffold562 TRF Tandem_Repeat 280783 281038 272 + . . scaffold562 flankbed promoter 280809 280971 . + . ID=CGI_10016091; scaffold562 TRF Tandem_Repeat 280809 280971 191 + . . scaffold562 flankbed promoter 280863 280971 . + . ID=CGI_10016091; scaffold562 TRF Tandem_Repeat 280863 280971 200 + . . scaffold562 flankbed promoter 281083 281401 . + . ID=CGI_10016091; scaffold562 TRF Tandem_Repeat 281083 281401 344 + . . scaffold563 flankbed promoter 224070 224426 . + . ID=CGI_10019826; scaffold563 WUBlastX LINE_Penelope 224070 224426 49 - . . scaffold563 flankbed promoter 263015 263018 . - . ID=CGI_10019829; scaffold563 WUBlastX LINE_CR1 263015 263476 383 - . . scaffold563 flankbed promoter 262477 263007 . - . ID=CGI_10019829; scaffold563 WUBlastX LINE_CR1 262477 263007 336 - . . scaffold563 flankbed promoter 262967 263018 . - . ID=CGI_10019829; scaffold563 WUBlastX LINE_CR1 262967 263656 113 - . . scaffold563 flankbed promoter 269292 269636 . + . ID=CGI_10019831; scaffold563 WUBlastX LINE_CR1 269292 269636 78 - . . scaffold563 flankbed promoter 269301 269588 . + . ID=CGI_10019831; scaffold563 WUBlastX LINE_CR1 269301 269588 158 - . . scaffold563 flankbed promoter 269286 269720 . + . ID=CGI_10019831; scaffold563 WUBlastX LINE_L2 269286 269720 38 - . . scaffold563 flankbed promoter 423642 423797 . + . ID=CGI_10019842; scaffold563 TRF Tandem_Repeat 423642 423797 285 + . . scaffold563 flankbed promoter 542308 542634 . - . ID=CGI_10019845; scaffold563 WUBlastX LTR_Gypsy 542209 542634 54 - . . scaffold563 flankbed promoter 542209 542479 . + . ID=CGI_10019846; scaffold563 WUBlastX LTR_Gypsy 542209 542634 54 - . . scaffold563 flankbed promoter 601939 602154 . + . ID=CGI_10019848; scaffold563 WUBlastX LINE_RTE-X 601939 602154 67 - . . scaffold563 flankbed promoter 601852 602136 . + . ID=CGI_10019848; scaffold563 WUBlastX LINE_RTE-X 601852 602136 52 - . . scaffold563 flankbed promoter 601942 602121 . + . ID=CGI_10019848; scaffold563 WUBlastX LINE_RTE-X 601942 602121 73 - . . scaffold563 flankbed promoter 601798 602136 . + . ID=CGI_10019848; scaffold563 WUBlastX LINE_RTE-X 601798 602136 48 - . . scaffold564 flankbed promoter 25033 25151 . + . ID=CGI_10016125; scaffold564 TRF Tandem_Repeat 25033 25151 202 + . . scaffold564 flankbed promoter 41439 41484 . - . ID=CGI_10016126; scaffold564 TRF Tandem_Repeat 41439 41484 85 + . . scaffold564 flankbed promoter 79980 80037 . + . ID=CGI_10016127; scaffold564 TRF Tandem_Repeat 79980 80037 116 + . . scaffold564 flankbed promoter 106511 106651 . + . ID=CGI_10016128; scaffold564 TRF Tandem_Repeat 106511 106651 266 + . . scaffold564 flankbed promoter 203398 203487 . - . ID=CGI_10016131; scaffold564 TRF Tandem_Repeat 203398 203487 164 + . . scaffold564 flankbed promoter 207089 207163 . - . ID=CGI_10016132; scaffold564 TRF Tandem_Repeat 207089 207163 132 + . . scaffold564 flankbed promoter 372742 373041 . + . ID=CGI_10016148; scaffold564 WUBlastX DNA_TcMar-Marin 372742 373041 41 + . . scaffold564 flankbed promoter 372793 373068 . + . ID=CGI_10016148; scaffold564 WUBlastX DNA_TcMar-Marin 372793 373068 51 + . . scaffold564 flankbed promoter 373281 373352 . + . ID=CGI_10016148; scaffold564 WUBlastX DNA_TcMar-Marin 373281 373352 20 + . . scaffold564 flankbed promoter 372659 372775 . + . ID=CGI_10016148; scaffold564 WUBlastX DNA_TcMar-Marin 372659 372775 26 + . . scaffold564 flankbed promoter 373337 373411 . + . ID=CGI_10016148; scaffold564 WUBlastX DNA_TcMar-Marin 373337 373411 27 + . . scaffold564 flankbed promoter 373456 373560 . + . ID=CGI_10016148; scaffold564 WUBlastX DNA_TcMar-Marin 373456 373560 24 + . . scaffold568 flankbed promoter 85698 85739 . - . ID=CGI_10012163; scaffold568 TRF Tandem_Repeat 85698 85739 50 + . . scaffold569 flankbed promoter 31779 31855 . + . ID=CGI_10009494; scaffold569 TRF Tandem_Repeat 31779 31855 136 + . . scaffold569 flankbed promoter 32148 32176 . + . ID=CGI_10009494; scaffold569 TRF Tandem_Repeat 32148 32176 58 + . . scaffold569 flankbed promoter 32260 32310 . + . ID=CGI_10009494; scaffold569 TRF Tandem_Repeat 32260 32310 75 + . . scaffold569 flankbed promoter 90091 90183 . - . ID=CGI_10009495; scaffold569 TRF Tandem_Repeat 90091 90183 55 + . . scaffold569 flankbed promoter 90109 90184 . - . ID=CGI_10009495; scaffold569 TRF Tandem_Repeat 90109 90184 56 + . . scaffold569 flankbed promoter 90103 90184 . - . ID=CGI_10009495; scaffold569 TRF Tandem_Repeat 90103 90184 69 + . . scaffold569 flankbed promoter 202500 203090 . + . ID=CGI_10009502; scaffold569 WUBlastX DNA_Maverick 202500 203090 352 + . . scaffold57 flankbed promoter 48820 48874 . + . ID=CGI_10020534; scaffold57 TRF Tandem_Repeat 48820 48874 85 + . . scaffold57 flankbed promoter 231216 231784 . + . ID=CGI_10020546; scaffold57 TRF Tandem_Repeat 230711 231784 1472 + . . scaffold57 flankbed promoter 285682 285706 . - . ID=CGI_10020548; scaffold57 TRF Tandem_Repeat 285682 285706 50 + . . scaffold57 flankbed promoter 285926 285972 . - . ID=CGI_10020548; scaffold57 TRF Tandem_Repeat 285926 285972 94 + . . scaffold57 flankbed promoter 294392 294529 . - . ID=CGI_10020549; scaffold57 WUBlastX DNA_hAT 293606 294529 499 - . . scaffold57 flankbed promoter 360566 360595 . + . ID=CGI_10020552; scaffold57 TRF Tandem_Repeat 360566 360595 60 + . . scaffold57 flankbed promoter 476664 476799 . + . ID=CGI_10020563; scaffold57 WUBlastX LINE_RTE-X 476473 476799 46 - . . scaffold57 flankbed promoter 477127 477255 . + . ID=CGI_10020563; scaffold57 WUBlastX LINE_RTE-X 477127 477255 25 - . . scaffold57 flankbed promoter 476889 477104 . + . ID=CGI_10020563; scaffold57 WUBlastX LINE_RTE-X 476889 477104 33 - . . scaffold57 flankbed promoter 476664 476937 . + . ID=CGI_10020563; scaffold57 WUBlastX LINE_RTE-X 476473 476937 46 - . . scaffold57 flankbed promoter 505826 506070 . + . ID=CGI_10020564; scaffold57 TRF Tandem_Repeat 505085 506070 1200 + . . scaffold572 flankbed promoter 4730 5042 . + . ID=CGI_10001775; scaffold572 TRF Tandem_Repeat 4422 5042 825 + . . scaffold572 flankbed promoter 22229 22290 . - . ID=CGI_10001777; scaffold572 TRF Tandem_Repeat 22229 22290 70 + . . scaffold576 flankbed promoter 100749 100790 . - . ID=CGI_10018754; scaffold576 TRF Tandem_Repeat 100749 100790 84 + . . scaffold576 flankbed promoter 351132 351179 . - . ID=CGI_10018775; scaffold576 TRF Tandem_Repeat 351132 351179 96 + . . scaffold576 flankbed promoter 351250 351289 . - . ID=CGI_10018775; scaffold576 TRF Tandem_Repeat 351250 351289 80 + . . scaffold576 flankbed promoter 406218 406457 . - . ID=CGI_10018779; scaffold576 TRF Tandem_Repeat 406218 406457 212 + . . scaffold576 flankbed promoter 445256 445769 . - . ID=CGI_10018782; scaffold576 WUBlastX LTR_Gypsy 445256 446449 544 - . . scaffold576 flankbed promoter 444959 445769 . - . ID=CGI_10018782; scaffold576 WUBlastX LTR_Gypsy 444959 446434 430 - . . scaffold576 flankbed promoter 549347 549417 . + . ID=CGI_10018789; scaffold576 TRF Tandem_Repeat 549347 549417 106 + . . scaffold577 flankbed promoter 114971 114976 . + . ID=CGI_10009917; scaffold577 WUBlastX LTR_DIRS 114971 115249 80 + . . scaffold577 flankbed promoter 184433 184463 . - . ID=CGI_10009918; scaffold577 TRF Tandem_Repeat 184433 184463 62 + . . scaffold578 flankbed promoter 235153 235193 . - . ID=CGI_10015121; scaffold578 TRF Tandem_Repeat 235153 235729 766 + . . scaffold578 flankbed promoter 297398 297464 . + . ID=CGI_10015125; scaffold578 TRF Tandem_Repeat 297398 297464 134 + . . scaffold578 flankbed promoter 318732 319614 . + . ID=CGI_10015128; scaffold578 WUBlastX DNA_PiggyBac 318004 319614 885 + . . scaffold579 flankbed promoter 192799 192910 . + . ID=CGI_10011264; scaffold579 TRF Tandem_Repeat 192799 192910 208 + . . scaffold579 flankbed promoter 238494 239165 . + . ID=CGI_10011265; scaffold579 WUBlastX DNA_hAT 238494 239165 95 + . . scaffold58 flankbed promoter 81440 81482 . + . ID=CGI_10023132; scaffold58 TRF Tandem_Repeat 81440 81482 54 + . . scaffold58 flankbed promoter 305132 305236 . - . ID=CGI_10023139; scaffold58 TRF Tandem_Repeat 305132 305236 74 + . . scaffold58 flankbed promoter 305137 305236 . - . ID=CGI_10023139; scaffold58 TRF Tandem_Repeat 305137 305236 91 + . . scaffold58 flankbed promoter 302928 303016 . + . ID=CGI_10023140; scaffold58 TRF Tandem_Repeat 302928 303016 81 + . . scaffold58 flankbed promoter 357781 358049 . - . ID=CGI_10023142; scaffold58 TRF Tandem_Repeat 357781 358049 344 + . . scaffold58 flankbed promoter 400233 400423 . - . ID=CGI_10023143; scaffold58 WUBlastX LINE_L1-Tx1 400233 400490 66 - . . scaffold58 flankbed promoter 502866 502907 . + . ID=CGI_10023147; scaffold58 TRF Tandem_Repeat 502866 502907 66 + . . scaffold58 flankbed promoter 502979 503022 . + . ID=CGI_10023147; scaffold58 TRF Tandem_Repeat 502979 503022 88 + . . scaffold58 flankbed promoter 531430 531483 . + . ID=CGI_10023150; scaffold58 TRF Tandem_Repeat 531430 531483 63 + . . scaffold58 flankbed promoter 550459 550740 . + . ID=CGI_10023151; scaffold58 TRF Tandem_Repeat 550459 550740 241 + . . scaffold58 flankbed promoter 550977 551442 . + . ID=CGI_10023151; scaffold58 WUBlastX DNA_IS4EU 550977 551453 45 - . . scaffold58 flankbed promoter 550932 551442 . + . ID=CGI_10023151; scaffold58 WUBlastX DNA_Kolobok-IS4 550932 551504 38 - . . scaffold58 flankbed promoter 576120 576408 . - . ID=CGI_10023153; scaffold58 TRF Tandem_Repeat 576120 577044 1163 + . . scaffold58 flankbed promoter 661344 661392 . - . ID=CGI_10023158; scaffold58 TRF Tandem_Repeat 661344 661479 147 + . . scaffold58 flankbed promoter 703802 704082 . - . ID=CGI_10023160; scaffold58 TRF Tandem_Repeat 703802 704082 200 + . . scaffold58 flankbed promoter 714596 714635 . - . ID=CGI_10023161; scaffold58 TRF Tandem_Repeat 714596 714635 52 + . . scaffold58 flankbed promoter 714586 714639 . - . ID=CGI_10023161; scaffold58 TRF Tandem_Repeat 714586 714639 73 + . . scaffold58 flankbed promoter 714590 714639 . - . ID=CGI_10023161; scaffold58 TRF Tandem_Repeat 714590 714639 57 + . . scaffold58 flankbed promoter 784855 784916 . - . ID=CGI_10023164; scaffold58 TRF Tandem_Repeat 784855 784916 70 + . . scaffold580 flankbed promoter 85963 85975 . - . ID=CGI_10020485; scaffold580 TRF Tandem_Repeat 85963 85999 74 + . . scaffold580 flankbed promoter 162178 162362 . + . ID=CGI_10020488; scaffold580 TRF Tandem_Repeat 162144 162362 194 + . . scaffold580 flankbed promoter 213804 213828 . - . ID=CGI_10020490; scaffold580 TRF Tandem_Repeat 213804 213872 138 + . . scaffold580 flankbed promoter 243535 243653 . + . ID=CGI_10020492; scaffold580 TRF Tandem_Repeat 243535 243653 107 + . . scaffold580 flankbed promoter 243551 243759 . + . ID=CGI_10020492; scaffold580 TRF Tandem_Repeat 243551 243759 122 + . . scaffold580 flankbed promoter 243762 243974 . + . ID=CGI_10020492; scaffold580 TRF Tandem_Repeat 243762 243974 219 + . . scaffold580 flankbed promoter 289221 289251 . + . ID=CGI_10020496; scaffold580 TRF Tandem_Repeat 289221 289251 62 + . . scaffold580 flankbed promoter 299301 299355 . - . ID=CGI_10020497; scaffold580 TRF Tandem_Repeat 299301 299355 110 + . . scaffold580 flankbed promoter 492721 492778 . + . ID=CGI_10020511; scaffold580 TRF Tandem_Repeat 492721 492778 89 + . . scaffold580 flankbed promoter 534773 534842 . + . ID=CGI_10020515; scaffold580 TRF Tandem_Repeat 534773 534842 140 + . . scaffold580 flankbed promoter 547794 547856 . + . ID=CGI_10020516; scaffold580 WUBlastX LTR_Gypsy-Troyk 547530 547856 32 + . . scaffold580 flankbed promoter 586560 586605 . - . ID=CGI_10020521; scaffold580 TRF Tandem_Repeat 586560 586605 83 + . . scaffold580 flankbed promoter 591132 591157 . - . ID=CGI_10020522; scaffold580 TRF Tandem_Repeat 591132 591157 52 + . . scaffold580 flankbed promoter 642207 642254 . + . ID=CGI_10020527; scaffold580 TRF Tandem_Repeat 642207 642254 96 + . . scaffold581 flankbed promoter 92636 92705 . + . ID=CGI_10013737; scaffold581 TRF Tandem_Repeat 92636 92705 131 + . . scaffold581 flankbed promoter 195210 195211 . - . ID=CGI_10013740; scaffold581 TRF Tandem_Repeat 195210 195859 920 + . . scaffold581 flankbed promoter 195210 195211 . - . ID=CGI_10013740; scaffold581 TRF Tandem_Repeat 195210 195859 900 + . . scaffold581 flankbed promoter 195210 195211 . - . ID=CGI_10013740; scaffold581 TRF Tandem_Repeat 195210 195859 920 + . . scaffold581 flankbed promoter 206997 207164 . - . ID=CGI_10013741; scaffold581 WUBlastX LTR_Gypsy 206997 207164 106 + . . scaffold581 flankbed promoter 207027 207164 . - . ID=CGI_10013741; scaffold581 WUBlastX LTR_Gypsy 207027 207164 108 + . . scaffold581 flankbed promoter 207160 207438 . - . ID=CGI_10013741; scaffold581 WUBlastX LTR_Gypsy 207160 207438 158 + . . scaffold581 flankbed promoter 207470 207745 . - . ID=CGI_10013741; scaffold581 WUBlastX LTR_Gypsy 207470 207805 96 + . . scaffold581 flankbed promoter 207124 207372 . - . ID=CGI_10013741; scaffold581 WUBlastX LTR_Gypsy 207124 207372 207 + . . scaffold581 flankbed promoter 207464 207742 . - . ID=CGI_10013741; scaffold581 WUBlastX LTR_Gypsy 207464 207742 128 + . . scaffold581 flankbed promoter 207070 207393 . - . ID=CGI_10013741; scaffold581 WUBlastX LTR_Gypsy 207070 207393 163 + . . scaffold581 flankbed promoter 206961 207161 . - . ID=CGI_10013741; scaffold581 WUBlastX LTR_Gypsy 206961 207161 49 + . . scaffold581 flankbed promoter 303702 303758 . + . ID=CGI_10013743; scaffold581 WUBlastX LINE_L1-Tx1 303702 303758 31 + . . scaffold581 flankbed promoter 303286 303399 . + . ID=CGI_10013743; scaffold581 WUBlastX LINE_L1-Tx1 302734 303399 114 + . . scaffold583 flankbed promoter 95075 95105 . + . ID=CGI_10023605; scaffold583 TRF Tandem_Repeat 95075 95105 55 + . . scaffold583 flankbed promoter 266364 266852 . - . ID=CGI_10023614; scaffold583 WUBlastX LTR_Gypsy 266364 266852 42 - . . scaffold583 flankbed promoter 266331 266954 . - . ID=CGI_10023614; scaffold583 WUBlastX LTR_Gypsy 266331 266954 26 - . . scaffold583 flankbed promoter 266835 266852 . - . ID=CGI_10023615; scaffold583 WUBlastX LTR_Gypsy 266364 266852 42 - . . scaffold583 flankbed promoter 266835 266954 . - . ID=CGI_10023615; scaffold583 WUBlastX LTR_Gypsy 266331 266954 26 - . . scaffold583 flankbed promoter 278966 279542 . + . ID=CGI_10023617; scaffold583 WUBlastX LTR_Gypsy 278904 279542 25 + . . scaffold583 flankbed promoter 279627 279965 . + . ID=CGI_10023617; scaffold583 WUBlastX LTR_DIRS 279627 280883 233 + . . scaffold583 flankbed promoter 279105 279965 . + . ID=CGI_10023617; scaffold583 WUBlastX LTR_DIRS 279105 280775 184 + . . scaffold583 flankbed promoter 279015 279473 . + . ID=CGI_10023617; scaffold583 WUBlastX LTR_Gypsy 279015 279473 47 + . . scaffold583 flankbed promoter 289536 290106 . - . ID=CGI_10023618; scaffold583 WUBlastX DNA_En-Spm 289536 290192 499 - . . scaffold583 flankbed promoter 320143 320184 . - . ID=CGI_10023620; scaffold583 TRF Tandem_Repeat 320143 320184 75 + . . scaffold583 flankbed promoter 594616 594657 . + . ID=CGI_10023633; scaffold583 TRF Tandem_Repeat 594616 594657 84 + . . scaffold583 flankbed promoter 793490 793514 . + . ID=CGI_10023648; scaffold583 TRF Tandem_Repeat 793490 793514 50 + . . scaffold583 flankbed promoter 819353 819393 . - . ID=CGI_10023649; scaffold583 WUBlastX DNA_TcMar-Marin 819353 819604 56 - . . scaffold585 flankbed promoter 70311 70784 . + . ID=CGI_10005539; scaffold585 WUBlastX LTR_Gypsy-Cigr 70311 70784 130 + . . scaffold585 flankbed promoter 70110 70637 . + . ID=CGI_10005539; scaffold585 WUBlastX LTR_Gypsy 70110 70637 79 + . . scaffold585 flankbed promoter 70326 70898 . + . ID=CGI_10005539; scaffold585 WUBlastX LTR_Gypsy-Cigr 70326 70898 106 + . . scaffold585 flankbed promoter 89235 89296 . - . ID=CGI_10005540; scaffold585 TRF Tandem_Repeat 89235 89296 117 + . . scaffold585 flankbed promoter 107660 108004 . - . ID=CGI_10005541; scaffold585 WUBlastX LINE_RTE-BovB 107660 108004 33 + . . scaffold585 flankbed promoter 108278 108400 . - . ID=CGI_10005541; scaffold585 WUBlastX LINE_RTE-BovB 108278 108400 39 + . . scaffold585 flankbed promoter 107553 107636 . - . ID=CGI_10005541; scaffold585 WUBlastX LINE_RTE-BovB 107553 107636 23 + . . scaffold585 flankbed promoter 108408 108443 . - . ID=CGI_10005541; scaffold585 WUBlastX LINE_RTE-BovB 108408 108920 40 + . . scaffold586 flankbed promoter 143019 143081 . + . ID=CGI_10017999; scaffold586 TRF Tandem_Repeat 143019 143081 117 + . . scaffold586 flankbed promoter 143173 143208 . + . ID=CGI_10017999; scaffold586 TRF Tandem_Repeat 143173 143208 72 + . . scaffold586 flankbed promoter 143354 143402 . + . ID=CGI_10017999; scaffold586 TRF Tandem_Repeat 143354 143402 89 + . . scaffold586 flankbed promoter 183116 183148 . - . ID=CGI_10018000; scaffold586 TRF Tandem_Repeat 183116 183148 66 + . . scaffold586 flankbed promoter 197133 197191 . + . ID=CGI_10018002; scaffold586 TRF Tandem_Repeat 197133 197191 109 + . . scaffold586 flankbed promoter 197587 197958 . + . ID=CGI_10018002; scaffold586 WUBlastX LTR_Pao 197587 197958 164 - . . scaffold586 flankbed promoter 197734 198018 . + . ID=CGI_10018002; scaffold586 WUBlastX LTR_Pao 197734 198018 126 - . . scaffold586 flankbed promoter 197734 197958 . + . ID=CGI_10018002; scaffold586 WUBlastX LTR_Pao 197734 197958 209 - . . scaffold586 flankbed promoter 209761 209821 . + . ID=CGI_10018003; scaffold586 TRF Tandem_Repeat 209761 209821 122 + . . scaffold586 flankbed promoter 282900 282948 . + . ID=CGI_10018005; scaffold586 TRF Tandem_Repeat 282900 282948 62 + . . scaffold586 flankbed promoter 296318 296344 . + . ID=CGI_10018006; scaffold586 TRF Tandem_Repeat 296318 296344 54 + . . scaffold587 flankbed promoter 8536 8581 . - . ID=CGI_10006887; scaffold587 TRF Tandem_Repeat 8536 8581 92 + . . scaffold587 flankbed promoter 106128 106167 . + . ID=CGI_10006892; scaffold587 TRF Tandem_Repeat 106128 106167 80 + . . scaffold587 flankbed promoter 159371 159413 . + . ID=CGI_10006894; scaffold587 TRF Tandem_Repeat 159371 159413 86 + . . scaffold587 flankbed promoter 159993 160042 . + . ID=CGI_10006894; scaffold587 TRF Tandem_Repeat 159993 160042 84 + . . scaffold588 flankbed promoter 6475 6475 . + . ID=CGI_10016208; scaffold588 WUBlastX LINE_RTE-X 5861 6475 85 - . . scaffold588 flankbed promoter 6475 6666 . + . ID=CGI_10016208; scaffold588 WUBlastX LINE_RTE-X 6466 6666 69 - . . scaffold588 flankbed promoter 6493 6639 . + . ID=CGI_10016208; scaffold588 WUBlastX LINE_RTE-X 6493 6639 71 - . . scaffold588 flankbed promoter 116640 116936 . - . ID=CGI_10016210; scaffold588 WUBlastX LINE_Penelope 116640 117404 202 - . . scaffold588 flankbed promoter 116537 116644 . - . ID=CGI_10016210; scaffold588 WUBlastX LINE_Penelope 116537 116644 24 - . . scaffold588 flankbed promoter 116566 116676 . - . ID=CGI_10016210; scaffold588 WUBlastX LINE_Penelope 116566 116676 29 - . . scaffold588 flankbed promoter 389050 389084 . + . ID=CGI_10016224; scaffold588 TRF Tandem_Repeat 389050 389084 70 + . . scaffold588 flankbed promoter 414310 414480 . - . ID=CGI_10016227; scaffold588 WUBlastX LTR_Gypsy 414310 415284 57 + . . scaffold588 flankbed promoter 414466 414480 . - . ID=CGI_10016227; scaffold588 WUBlastX LTR_DIRS 414466 415206 119 + . . scaffold59 flankbed promoter 79779 79844 . - . ID=CGI_10011272; scaffold59 WUBlastX LINE_L1-Tx1 79779 79844 20 + . . scaffold59 flankbed promoter 135539 135582 . - . ID=CGI_10011273; scaffold59 TRF Tandem_Repeat 135539 135582 88 + . . scaffold591 flankbed promoter 36715 37062 . - . ID=CGI_10027552; scaffold591 WUBlastX RC_Helitron 36715 39180 588 - . . scaffold591 flankbed promoter 76353 76979 . - . ID=CGI_10027553; scaffold591 WUBlastX LTR_DIRS 76353 76979 185 + . . scaffold591 flankbed promoter 76494 77060 . - . ID=CGI_10027553; scaffold591 WUBlastX LTR_DIRS 76494 77060 201 + . . scaffold591 flankbed promoter 76542 76979 . - . ID=CGI_10027553; scaffold591 WUBlastX LTR_DIRS 76542 76979 230 + . . scaffold591 flankbed promoter 102167 102481 . - . ID=CGI_10027554; scaffold591 WUBlastX LTR_Gypsy 102080 102481 48 - . . scaffold591 flankbed promoter 102167 102361 . - . ID=CGI_10027554; scaffold591 WUBlastX LTR_Pao 101759 102361 55 - . . scaffold591 flankbed promoter 102080 102446 . + . ID=CGI_10027555; scaffold591 WUBlastX LTR_Gypsy 102080 102481 48 - . . scaffold591 flankbed promoter 101759 102361 . + . ID=CGI_10027555; scaffold591 WUBlastX LTR_Pao 101759 102361 55 - . . scaffold591 flankbed promoter 224469 225053 . - . ID=CGI_10027559; scaffold591 WUBlastX LTR_Gypsy 224433 225053 88 - . . scaffold591 flankbed promoter 224547 225095 . - . ID=CGI_10027559; scaffold591 WUBlastX LTR_Gypsy 224547 225095 94 - . . scaffold591 flankbed promoter 224469 224933 . - . ID=CGI_10027559; scaffold591 WUBlastX LTR_Gypsy 224316 224933 38 - . . scaffold591 flankbed promoter 375013 375132 . - . ID=CGI_10027565; scaffold591 WUBlastX DNA_MuDR 374806 375132 70 - . . scaffold591 flankbed promoter 375013 375240 . - . ID=CGI_10027565; scaffold591 WUBlastX DNA_MuDR 374845 375240 42 - . . scaffold591 flankbed promoter 550170 550258 . + . ID=CGI_10027574; scaffold591 TRF Tandem_Repeat 550170 550258 124 + . . scaffold591 flankbed promoter 635618 635655 . + . ID=CGI_10027579; scaffold591 TRF Tandem_Repeat 635618 635655 76 + . . scaffold591 flankbed promoter 813371 813436 . + . ID=CGI_10027583; scaffold591 TRF Tandem_Repeat 813371 813436 114 + . . scaffold591 flankbed promoter 913856 913948 . - . ID=CGI_10027587; scaffold591 TRF Tandem_Repeat 913856 913948 60 + . . scaffold591 flankbed promoter 913856 914040 . - . ID=CGI_10027587; scaffold591 TRF Tandem_Repeat 913856 914040 291 + . . scaffold591 flankbed promoter 916325 916417 . - . ID=CGI_10027588; scaffold591 TRF Tandem_Repeat 916325 916417 60 + . . scaffold591 flankbed promoter 916325 916545 . - . ID=CGI_10027588; scaffold591 TRF Tandem_Repeat 916325 916545 352 + . . scaffold591 flankbed promoter 947151 947181 . - . ID=CGI_10027591; scaffold591 TRF Tandem_Repeat 947151 947181 53 + . . scaffold591 flankbed promoter 947182 947242 . - . ID=CGI_10027591; scaffold591 TRF Tandem_Repeat 947182 947242 122 + . . scaffold591 flankbed promoter 1078961 1079116 . + . ID=CGI_10027597; scaffold591 WUBlastX DNA_TcMar-Tc2 1078961 1079320 97 + . . scaffold591 flankbed promoter 1078928 1079116 . + . ID=CGI_10027597; scaffold591 WUBlastX DNA_TcMar-Tc2 1078928 1079140 55 + . . scaffold591 flankbed promoter 1164153 1164421 . + . ID=CGI_10027603; scaffold591 TRF Tandem_Repeat 1164153 1164421 188 + . . scaffold591 flankbed promoter 1164367 1164589 . + . ID=CGI_10027603; scaffold591 TRF Tandem_Repeat 1164367 1164589 185 + . . scaffold591 flankbed promoter 1369657 1369692 . - . ID=CGI_10027620; scaffold591 TRF Tandem_Repeat 1369657 1369816 88 + . . scaffold591 flankbed promoter 1371454 1371810 . + . ID=CGI_10027621; scaffold591 TRF Tandem_Repeat 1370934 1371810 919 + . . scaffold591 flankbed promoter 1391406 1391454 . - . ID=CGI_10027625; scaffold591 TRF Tandem_Repeat 1391406 1391454 71 + . . scaffold591 flankbed promoter 1392262 1392304 . - . ID=CGI_10027625; scaffold591 TRF Tandem_Repeat 1392262 1392304 68 + . . scaffold592 flankbed promoter 113692 113741 . + . ID=CGI_10010705; scaffold592 TRF Tandem_Repeat 113692 113741 82 + . . scaffold592 flankbed promoter 262017 262041 . + . ID=CGI_10010710; scaffold592 TRF Tandem_Repeat 262017 262041 50 + . . scaffold593 flankbed promoter 67459 67644 . + . ID=CGI_10022511; scaffold593 WUBlastX LINE_CR1 67336 67644 116 + . . scaffold593 flankbed promoter 67459 67716 . + . ID=CGI_10022511; scaffold593 WUBlastX LINE_CR1 67402 67716 143 + . . scaffold593 flankbed promoter 275555 275773 . - . ID=CGI_10022520; scaffold593 WUBlastX LINE_RTE-X 275555 275773 94 - . . scaffold593 flankbed promoter 275555 275818 . - . ID=CGI_10022520; scaffold593 WUBlastX LINE_RTE-X 275555 275818 50 - . . scaffold593 flankbed promoter 275385 275561 . - . ID=CGI_10022520; scaffold593 WUBlastX LINE_RTE-X 274506 275561 252 - . . scaffold593 flankbed promoter 482720 482818 . - . ID=CGI_10022531; scaffold593 WUBlastX LINE_RTE-BovB 482720 482818 20 - . . scaffold593 flankbed promoter 500517 500708 . + . ID=CGI_10022533; scaffold593 WUBlastX LTR_Gypsy 500517 500708 45 - . . scaffold593 flankbed promoter 500523 500741 . + . ID=CGI_10022533; scaffold593 WUBlastX LTR_Gypsy 500523 500741 31 - . . scaffold593 flankbed promoter 500018 500350 . + . ID=CGI_10022533; scaffold593 WUBlastX LTR_Gypsy 500018 500350 24 - . . scaffold593 flankbed promoter 500517 500901 . + . ID=CGI_10022533; scaffold593 WUBlastX LTR_Gypsy-Cigr 500517 500948 31 - . . scaffold593 flankbed promoter 500294 500350 . + . ID=CGI_10022533; scaffold593 WUBlastX LTR_Gypsy 500294 500350 29 - . . scaffold593 flankbed promoter 500427 500690 . + . ID=CGI_10022533; scaffold593 WUBlastX LTR_Gypsy 500427 500690 41 - . . scaffold593 flankbed promoter 722885 723189 . + . ID=CGI_10022538; scaffold593 WUBlastX DNA_IS 722167 723189 1708 - . . scaffold593 flankbed promoter 727225 727344 . - . ID=CGI_10022539; scaffold593 WUBlastX LINE_RTE-X 727225 727344 41 - . . scaffold593 flankbed promoter 727080 727217 . - . ID=CGI_10022539; scaffold593 WUBlastX LINE_RTE-X 727080 727217 49 - . . scaffold593 flankbed promoter 726468 727323 . - . ID=CGI_10022539; scaffold593 WUBlastX LINE_RTE-X 726163 727323 47 - . . scaffold594 flankbed promoter 416169 416657 . - . ID=CGI_10016391; scaffold594 WUBlastX LINE_RTE-X 416070 416657 78 - . . scaffold594 flankbed promoter 416820 417167 . - . ID=CGI_10016391; scaffold594 WUBlastX LINE_L1-Tx1 416820 417167 163 + . . scaffold594 flankbed promoter 416400 416657 . - . ID=CGI_10016391; scaffold594 WUBlastX LINE_RTE-X 416400 416657 80 - . . scaffold594 flankbed promoter 416400 416738 . - . ID=CGI_10016391; scaffold594 WUBlastX LINE_RTE-X 416400 416738 44 - . . scaffold594 flankbed promoter 426695 426767 . + . ID=CGI_10016393; scaffold594 TRF Tandem_Repeat 426695 426767 128 + . . scaffold596 flankbed promoter 208886 209152 . + . ID=CGI_10009578; scaffold596 WUBlastX LTR_Gypsy 208886 209152 43 + . . scaffold597 flankbed promoter 44144 44265 . + . ID=CGI_10004928; scaffold597 WUBlastX LINE_RTE-BovB 43933 44265 77 - . . scaffold597 flankbed promoter 90624 90674 . - . ID=CGI_10004930; scaffold597 TRF Tandem_Repeat 90624 90674 50 + . . scaffold597 flankbed promoter 90631 90674 . - . ID=CGI_10004930; scaffold597 TRF Tandem_Repeat 90631 90674 54 + . . scaffold598 flankbed promoter 796 1302 . + . ID=CGI_10001778; scaffold598 WUBlastX LTR_Ngaro 796 1302 66 + . . scaffold598 flankbed promoter 679 1170 . + . ID=CGI_10001778; scaffold598 WUBlastX LTR_Ngaro 679 1170 188 + . . scaffold598 flankbed promoter 14980 15071 . + . ID=CGI_10001780; scaffold598 TRF Tandem_Repeat 14980 15071 130 + . . scaffold598 flankbed promoter 14542 14561 . + . ID=CGI_10001780; scaffold598 WUBlastX DNA_TcMar-Pogo 13893 14561 81 + . . scaffold598 flankbed promoter 14542 14687 . + . ID=CGI_10001780; scaffold598 WUBlastX DNA_TcMar-Pogo 13893 14687 79 + . . scaffold599 flankbed promoter 28083 28368 . + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Gypsy 26965 28368 386 + . . scaffold599 flankbed promoter 28709 28924 . + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Pao 28709 28924 56 + . . scaffold599 flankbed promoter 28790 28936 . + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Pao 28790 28936 66 + . . scaffold599 flankbed promoter 28083 28377 . + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Gypsy 26596 28377 284 + . . scaffold599 flankbed promoter 28083 28362 . + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Gypsy 27220 28362 552 + . . scaffold599 flankbed promoter 28616 28711 . + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Copia 28616 28711 21 + . . scaffold599 flankbed promoter 28361 28492 . + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Gypsy 28361 28492 43 + . . scaffold599 flankbed promoter 113574 114182 . + . ID=CGI_10021709; scaffold599 WUBlastX LINE_L2 113574 114182 85 + . . scaffold599 flankbed promoter 113664 114170 . + . ID=CGI_10021709; scaffold599 WUBlastX LINE_L1 113664 114170 105 + . . scaffold599 flankbed promoter 340864 341097 . - . ID=CGI_10021714; scaffold599 WUBlastX DNA_Kolobok-IS4 340864 341097 62 - . . scaffold599 flankbed promoter 340768 341031 . - . ID=CGI_10021714; scaffold599 WUBlastX DNA_P 340768 341031 93 - . . scaffold599 flankbed promoter 340725 341022 . - . ID=CGI_10021714; scaffold599 WUBlastX DNA_P 340699 341022 42 - . . scaffold599 flankbed promoter 420788 420871 . - . ID=CGI_10021722; scaffold599 WUBlastX LINE_RTE-X 420788 421354 284 - . . scaffold599 flankbed promoter 420160 420789 . - . ID=CGI_10021722; scaffold599 WUBlastX LINE_RTE-X 420160 420789 85 - . . scaffold599 flankbed promoter 420295 420789 . - . ID=CGI_10021722; scaffold599 WUBlastX LINE_RTE-X 420295 420789 108 - . . scaffold599 flankbed promoter 424358 424425 . + . ID=CGI_10021723; scaffold599 TRF Tandem_Repeat 424358 424425 136 + . . scaffold599 flankbed promoter 472486 473237 . - . ID=CGI_10021725; scaffold599 TRF Tandem_Repeat 472486 473240 960 + . . scaffold6 flankbed promoter 117834 117880 . + . ID=CGI_10022295; scaffold6 TRF Tandem_Repeat 117834 117880 85 + . . scaffold6 flankbed promoter 513626 513635 . - . ID=CGI_10022323; scaffold6 WUBlastX LINE_RTE-X 513626 513886 29 - . . scaffold6 flankbed promoter 513620 513635 . - . ID=CGI_10022323; scaffold6 WUBlastX LINE_RTE-X 513620 513793 79 - . . scaffold6 flankbed promoter 513626 513635 . - . ID=CGI_10022323; scaffold6 WUBlastX LINE_RTE-X 513626 513829 64 - . . scaffold6 flankbed promoter 546859 546967 . - . ID=CGI_10022324; scaffold6 TRF Tandem_Repeat 546859 546967 92 + . . scaffold6 flankbed promoter 547000 547029 . - . ID=CGI_10022324; scaffold6 TRF Tandem_Repeat 547000 547029 60 + . . scaffold6 flankbed promoter 529851 529925 . + . ID=CGI_10022325; scaffold6 TRF Tandem_Repeat 529851 529925 107 + . . scaffold6 flankbed promoter 529950 530506 . + . ID=CGI_10022325; scaffold6 TRF Tandem_Repeat 529950 530506 639 + . . scaffold6 flankbed promoter 529950 530537 . + . ID=CGI_10022325; scaffold6 TRF Tandem_Repeat 529950 530537 826 + . . scaffold6 flankbed promoter 529950 530506 . + . ID=CGI_10022325; scaffold6 TRF Tandem_Repeat 529950 530506 981 + . . scaffold6 flankbed promoter 613618 613668 . - . ID=CGI_10022329; scaffold6 TRF Tandem_Repeat 613618 613668 77 + . . scaffold6 flankbed promoter 613607 613661 . - . ID=CGI_10022329; scaffold6 TRF Tandem_Repeat 613607 613661 92 + . . scaffold6 flankbed promoter 613610 613667 . - . ID=CGI_10022329; scaffold6 TRF Tandem_Repeat 613610 613667 55 + . . scaffold6 flankbed promoter 613670 613783 . - . ID=CGI_10022329; scaffold6 WUBlastX DNA_Sola 613670 613783 32 - . . scaffold6 flankbed promoter 613747 613930 . - . ID=CGI_10022329; scaffold6 WUBlastX DNA_Sola 613747 615075 614 - . . scaffold6 flankbed promoter 613721 613783 . - . ID=CGI_10022329; scaffold6 WUBlastX DNA_Sola 613721 613783 44 - . . scaffold6 flankbed promoter 618797 619159 . - . ID=CGI_10022330; scaffold6 WUBlastX DNA_Sola 618746 619159 51 - . . scaffold6 flankbed promoter 668646 668701 . + . ID=CGI_10022331; scaffold6 TRF Tandem_Repeat 668646 668701 112 + . . scaffold6 flankbed promoter 669087 669115 . + . ID=CGI_10022331; scaffold6 TRF Tandem_Repeat 669087 669115 58 + . . scaffold60 flankbed promoter 91501 91570 . + . ID=CGI_10004685; scaffold60 TRF Tandem_Repeat 91501 91570 140 + . . scaffold60 flankbed promoter 97527 97793 . - . ID=CGI_10004686; scaffold60 WUBlastX DNA_Academ 97527 97793 44 - . . scaffold60 flankbed promoter 97334 97387 . - . ID=CGI_10004686; scaffold60 WUBlastX DNA_Academ 97010 97387 169 - . . scaffold601 flankbed promoter 119829 119885 . - . ID=CGI_10026805; scaffold601 TRF Tandem_Repeat 119829 119885 75 + . . scaffold601 flankbed promoter 119833 119878 . - . ID=CGI_10026805; scaffold601 TRF Tandem_Repeat 119833 119878 56 + . . scaffold601 flankbed promoter 119813 119893 . - . ID=CGI_10026805; scaffold601 TRF Tandem_Repeat 119813 119893 83 + . . scaffold601 flankbed promoter 119829 119885 . - . ID=CGI_10026805; scaffold601 TRF Tandem_Repeat 119829 119885 66 + . . scaffold601 flankbed promoter 252416 252502 . - . ID=CGI_10026814; scaffold601 TRF Tandem_Repeat 252416 252502 70 + . . scaffold601 flankbed promoter 252580 252658 . - . ID=CGI_10026814; scaffold601 TRF Tandem_Repeat 252580 252817 203 + . . scaffold601 flankbed promoter 257766 257815 . - . ID=CGI_10026815; scaffold601 TRF Tandem_Repeat 257766 257815 100 + . . scaffold601 flankbed promoter 356988 357024 . + . ID=CGI_10026822; scaffold601 TRF Tandem_Repeat 356988 357024 74 + . . scaffold601 flankbed promoter 357126 357214 . + . ID=CGI_10026822; scaffold601 TRF Tandem_Repeat 357126 357214 126 + . . scaffold601 flankbed promoter 436348 436494 . - . ID=CGI_10026824; scaffold601 WUBlastX DNA_NOF 436348 436494 46 - . . scaffold601 flankbed promoter 436658 436771 . - . ID=CGI_10026824; scaffold601 WUBlastX LTR_Gypsy-Cigr 436658 437053 158 - . . scaffold601 flankbed promoter 436538 436771 . - . ID=CGI_10026824; scaffold601 WUBlastX LTR_Gypsy 436538 437068 89 - . . scaffold601 flankbed promoter 436468 436680 . - . ID=CGI_10026824; scaffold601 WUBlastX LTR_Gypsy 436468 436680 23 - . . scaffold601 flankbed promoter 436249 436434 . - . ID=CGI_10026824; scaffold601 WUBlastX LTR_Pao 436249 436434 66 - . . scaffold601 flankbed promoter 436348 436494 . - . ID=CGI_10026825; scaffold601 WUBlastX DNA_NOF 436348 436494 46 - . . scaffold601 flankbed promoter 437062 437136 . - . ID=CGI_10026825; scaffold601 WUBlastX LTR_Gypsy 437062 437727 79 - . . scaffold601 flankbed promoter 436658 437053 . - . ID=CGI_10026825; scaffold601 WUBlastX LTR_Gypsy-Cigr 436658 437053 158 - . . scaffold601 flankbed promoter 436538 437068 . - . ID=CGI_10026825; scaffold601 WUBlastX LTR_Gypsy 436538 437068 89 - . . scaffold601 flankbed promoter 437062 437136 . - . ID=CGI_10026825; scaffold601 WUBlastX LTR_Gypsy 437062 437553 130 - . . scaffold601 flankbed promoter 436468 436680 . - . ID=CGI_10026825; scaffold601 WUBlastX LTR_Gypsy 436468 436680 23 - . . scaffold601 flankbed promoter 437062 437136 . - . ID=CGI_10026825; scaffold601 WUBlastX LTR_Gypsy-Cigr 437062 437433 229 - . . scaffold601 flankbed promoter 436249 436434 . - . ID=CGI_10026825; scaffold601 WUBlastX LTR_Pao 436249 436434 66 - . . scaffold601 flankbed promoter 509098 509185 . - . ID=CGI_10026832; scaffold601 WUBlastX DNA_IS4EU 509098 509211 29 + . . scaffold601 flankbed promoter 779082 779613 . + . ID=CGI_10026847; scaffold601 WUBlastX LINE_L1-Tx1 779071 779613 28 - . . scaffold601 flankbed promoter 779082 779403 . + . ID=CGI_10026847; scaffold601 WUBlastX LINE_L1-Tx1 778324 779403 72 - . . scaffold601 flankbed promoter 779082 779478 . + . ID=CGI_10026847; scaffold601 WUBlastX LINE_L1 779011 779478 37 - . . scaffold601 flankbed promoter 779082 779400 . + . ID=CGI_10026847; scaffold601 WUBlastX LINE_L1 778984 779400 86 - . . scaffold601 flankbed promoter 779564 779613 . + . ID=CGI_10026848; scaffold601 WUBlastX LINE_L1-Tx1 779071 779613 28 - . . scaffold601 flankbed promoter 850151 850185 . + . ID=CGI_10026850; scaffold601 TRF Tandem_Repeat 850151 850185 70 + . . scaffold601 flankbed promoter 850232 850360 . + . ID=CGI_10026850; scaffold601 WUBlastX DNA_IS4EU 850232 850360 47 + . . scaffold601 flankbed promoter 850820 850987 . + . ID=CGI_10026850; scaffold601 WUBlastX DNA_IS4EU 850820 850987 35 + . . scaffold601 flankbed promoter 850889 850960 . + . ID=CGI_10026850; scaffold601 WUBlastX DNA_IS4EU 850889 850960 41 + . . scaffold601 flankbed promoter 850907 851032 . + . ID=CGI_10026850; scaffold601 WUBlastX DNA_IS4EU 850907 851032 20 + . . scaffold601 flankbed promoter 850489 850674 . + . ID=CGI_10026850; scaffold601 WUBlastX DNA_IS4EU 850489 850674 22 + . . scaffold601 flankbed promoter 1147722 1148009 . - . ID=CGI_10026859; scaffold601 WUBlastX LTR_Gypsy 1147584 1148009 48 - . . scaffold601 flankbed promoter 1147722 1147958 . - . ID=CGI_10026859; scaffold601 WUBlastX LTR_Gypsy 1147683 1147958 71 - . . scaffold601 flankbed promoter 1226886 1226957 . - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1226886 1226957 144 + . . scaffold601 flankbed promoter 1227077 1227306 . - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1227077 1227306 338 + . . scaffold601 flankbed promoter 1227077 1227439 . - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1227077 1227439 372 + . . scaffold601 flankbed promoter 1227077 1227439 . - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1227077 1227439 390 + . . scaffold601 flankbed promoter 1227342 1227439 . - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1227342 1227439 160 + . . scaffold601 flankbed promoter 1227589 1227664 . - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1227589 1227664 152 + . . scaffold602 flankbed promoter 225365 226297 . - . ID=CGI_10023178; scaffold602 TRF Tandem_Repeat 225365 226297 856 + . . scaffold602 flankbed promoter 473396 473420 . + . ID=CGI_10023189; scaffold602 TRF Tandem_Repeat 473396 473420 50 + . . scaffold602 flankbed promoter 481486 482462 . + . ID=CGI_10023190; scaffold602 TRF Tandem_Repeat 481428 482462 1408 + . . scaffold602 flankbed promoter 526040 526089 . + . ID=CGI_10023194; scaffold602 TRF Tandem_Repeat 526040 526089 57 + . . scaffold602 flankbed promoter 617273 617296 . - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616958 617296 162 - . . scaffold602 flankbed promoter 617273 617347 . - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616946 617347 62 - . . scaffold603 flankbed promoter 26932 26974 . - . ID=CGI_10009894; scaffold603 TRF Tandem_Repeat 26932 26974 59 + . . scaffold603 flankbed promoter 131079 131133 . - . ID=CGI_10009902; scaffold603 TRF Tandem_Repeat 131079 131133 110 + . . scaffold606 flankbed promoter 5984 6663 . + . ID=CGI_10012937; scaffold606 WUBlastX LTR_Gypsy 5287 6663 654 - . . scaffold606 flankbed promoter 6912 6983 . + . ID=CGI_10012937; scaffold606 WUBlastX LTR_Gypsy-Troyk 6912 7067 81 + . . scaffold606 flankbed promoter 44821 44955 . - . ID=CGI_10012938; scaffold606 WUBlastX LINE_RTE-X 44821 44955 61 - . . scaffold606 flankbed promoter 57799 57848 . - . ID=CGI_10012939; scaffold606 TRF Tandem_Repeat 57799 57848 91 + . . scaffold606 flankbed promoter 117215 117317 . + . ID=CGI_10012942; scaffold606 TRF Tandem_Repeat 117215 117317 170 + . . scaffold606 flankbed promoter 277877 277905 . + . ID=CGI_10012952; scaffold606 TRF Tandem_Repeat 277844 277905 106 + . . scaffold606 flankbed promoter 296623 296763 . + . ID=CGI_10012954; scaffold606 WUBlastX LINE_L2 296623 296763 22 + . . scaffold606 flankbed promoter 295790 296414 . + . ID=CGI_10012954; scaffold606 WUBlastX LTR_Gypsy 295638 296414 206 + . . scaffold606 flankbed promoter 295905 296435 . + . ID=CGI_10012954; scaffold606 WUBlastX LTR_Gypsy 295905 296435 225 + . . scaffold606 flankbed promoter 295797 296414 . + . ID=CGI_10012954; scaffold606 WUBlastX LTR_Gypsy 295797 296414 211 + . . scaffold606 flankbed promoter 296709 296789 . + . ID=CGI_10012954; scaffold606 WUBlastX LINE_CR1-L2 296709 297080 58 + . . scaffold609 flankbed promoter 242600 242640 . - . ID=CGI_10010468; scaffold609 TRF Tandem_Repeat 242600 242640 82 + . . scaffold61 flankbed promoter 35154 35240 . + . ID=CGI_10016337; scaffold61 WUBlastX LINE_RTE-X 35154 35240 39 + . . scaffold61 flankbed promoter 35172 35930 . + . ID=CGI_10016337; scaffold61 WUBlastX LINE_RTE-X 35172 35930 72 + . . scaffold61 flankbed promoter 97452 97504 . - . ID=CGI_10016342; scaffold61 TRF Tandem_Repeat 97452 97504 106 + . . scaffold61 flankbed promoter 188931 188968 . + . ID=CGI_10016347; scaffold61 TRF Tandem_Repeat 188919 188968 100 + . . scaffold61 flankbed promoter 189652 189930 . + . ID=CGI_10016347; scaffold61 WUBlastX DNA_Sola 189652 190515 31 + . . scaffold610 flankbed promoter 52823 53056 . - . ID=CGI_10021085; scaffold610 WUBlastX DNA_TcMar-Tc1 52823 53056 36 - . . scaffold610 flankbed promoter 100538 101138 . + . ID=CGI_10021088; scaffold610 TRF Tandem_Repeat 100272 101138 1148 + . . scaffold610 flankbed promoter 124908 125021 . - . ID=CGI_10021091; scaffold610 WUBlastX DNA_Harbinger 124908 125171 32 - . . scaffold610 flankbed promoter 238774 238803 . + . ID=CGI_10021102; scaffold610 TRF Tandem_Repeat 238774 238803 51 + . . scaffold610 flankbed promoter 405800 405859 . - . ID=CGI_10021122; scaffold610 TRF Tandem_Repeat 405800 405859 120 + . . scaffold610 flankbed promoter 411812 411873 . + . ID=CGI_10021123; scaffold610 TRF Tandem_Repeat 411812 411873 110 + . . scaffold610 flankbed promoter 570976 571021 . - . ID=CGI_10021130; scaffold610 TRF Tandem_Repeat 570976 571021 83 + . . scaffold610 flankbed promoter 570104 570199 . - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy 570104 570199 32 + . . scaffold610 flankbed promoter 570086 570199 . - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy 570086 570199 27 + . . scaffold610 flankbed promoter 599737 600459 . - . ID=CGI_10021131; scaffold610 WUBlastX LINE_L1 599737 600459 47 - . . scaffold610 flankbed promoter 599737 599850 . - . ID=CGI_10021131; scaffold610 WUBlastX LINE_L1 599722 599850 52 - . . scaffold610 flankbed promoter 660961 661013 . - . ID=CGI_10021132; scaffold610 TRF Tandem_Repeat 660961 661013 106 + . . scaffold610 flankbed promoter 661086 661124 . - . ID=CGI_10021132; scaffold610 TRF Tandem_Repeat 661086 661124 60 + . . scaffold610 flankbed promoter 661346 661377 . - . ID=CGI_10021132; scaffold610 TRF Tandem_Repeat 661346 661377 64 + . . scaffold612 flankbed promoter 16282 16916 . - . ID=CGI_10009459; scaffold612 WUBlastX DNA_Crypton 16282 17298 223 - . . scaffold612 flankbed promoter 76520 76582 . - . ID=CGI_10009461; scaffold612 WUBlastX LTR_Gypsy 76520 76582 36 - . . scaffold612 flankbed promoter 76374 76532 . - . ID=CGI_10009461; scaffold612 WUBlastX LTR_Gypsy-Cigr 76374 76532 58 - . . scaffold612 flankbed promoter 76705 76994 . - . ID=CGI_10009461; scaffold612 WUBlastX LTR_Gypsy-Cigr 76705 77304 338 - . . scaffold612 flankbed promoter 76242 76271 . - . ID=CGI_10009461; scaffold612 WUBlastX LTR_Gypsy 76242 76271 20 - . . scaffold612 flankbed promoter 76326 76487 . - . ID=CGI_10009461; scaffold612 WUBlastX LTR_Gypsy 76326 76487 35 - . . scaffold612 flankbed promoter 76520 76609 . - . ID=CGI_10009461; scaffold612 WUBlastX LTR_Gypsy 76520 76609 25 - . . scaffold612 flankbed promoter 76726 76994 . - . ID=CGI_10009461; scaffold612 WUBlastX LTR_Gypsy 76726 77424 210 - . . scaffold612 flankbed promoter 76239 76286 . - . ID=CGI_10009461; scaffold612 WUBlastX LTR_Gypsy 76239 76286 20 - . . scaffold612 flankbed promoter 98470 98613 . - . ID=CGI_10009462; scaffold612 WUBlastX LTR_Gypsy 98419 98613 53 - . . scaffold612 flankbed promoter 98470 98580 . - . ID=CGI_10009462; scaffold612 WUBlastX LTR_Gypsy 98215 98580 52 - . . scaffold614 flankbed promoter 151961 152017 . + . ID=CGI_10016262; scaffold614 TRF Tandem_Repeat 151961 152017 105 + . . scaffold614 flankbed promoter 259375 259996 . - . ID=CGI_10016265; scaffold614 WUBlastX LINE_RTE-X 259375 260286 136 + . . scaffold614 flankbed promoter 259301 259381 . - . ID=CGI_10016265; scaffold614 WUBlastX LINE_RTE-X 259301 259381 29 + . . scaffold614 flankbed promoter 448178 448233 . + . ID=CGI_10016277; scaffold614 TRF Tandem_Repeat 448178 448233 112 + . . scaffold615 flankbed promoter 32707 33024 . + . ID=CGI_10003748; scaffold615 WUBlastX LINE_CR1-L2 32707 33024 81 + . . scaffold616 flankbed promoter 40680 40736 . - . ID=CGI_10015383; scaffold616 TRF Tandem_Repeat 40680 40736 114 + . . scaffold616 flankbed promoter 183958 184015 . + . ID=CGI_10015392; scaffold616 TRF Tandem_Repeat 183958 184015 109 + . . scaffold616 flankbed promoter 208973 209092 . + . ID=CGI_10015394; scaffold616 TRF Tandem_Repeat 208973 209092 213 + . . scaffold616 flankbed promoter 231233 231305 . - . ID=CGI_10015396; scaffold616 TRF Tandem_Repeat 231233 231305 146 + . . scaffold616 flankbed promoter 245312 245340 . - . ID=CGI_10015397; scaffold616 TRF Tandem_Repeat 245312 245340 58 + . . scaffold616 flankbed promoter 337667 337720 . - . ID=CGI_10015404; scaffold616 TRF Tandem_Repeat 337667 337720 90 + . . scaffold616 flankbed promoter 350065 350094 . + . ID=CGI_10015407; scaffold616 TRF Tandem_Repeat 350065 350094 60 + . . scaffold617 flankbed promoter 115995 116162 . - . ID=CGI_10012723; scaffold617 WUBlastX LINE_RTE-X 115143 116162 239 - . . scaffold617 flankbed promoter 115995 116297 . - . ID=CGI_10012723; scaffold617 WUBlastX LINE_RTE-X 115059 116297 227 - . . scaffold617 flankbed promoter 120899 121189 . + . ID=CGI_10012724; scaffold617 WUBlastX DNA_Academ 120074 121189 429 + . . scaffold617 flankbed promoter 121215 121898 . + . ID=CGI_10012724; scaffold617 WUBlastX DNA_Academ 121215 122126 482 + . . scaffold617 flankbed promoter 149749 149886 . + . ID=CGI_10012728; scaffold617 TRF Tandem_Repeat 149697 149886 227 + . . scaffold617 flankbed promoter 149971 150057 . + . ID=CGI_10012728; scaffold617 TRF Tandem_Repeat 149971 150057 88 + . . scaffold617 flankbed promoter 150131 150312 . + . ID=CGI_10012728; scaffold617 TRF Tandem_Repeat 150131 150312 91 + . . scaffold617 flankbed promoter 150328 150541 . + . ID=CGI_10012728; scaffold617 TRF Tandem_Repeat 150328 150541 205 + . . scaffold619 flankbed promoter 226440 226491 . + . ID=CGI_10025760; scaffold619 TRF Tandem_Repeat 226440 226491 104 + . . scaffold619 flankbed promoter 563822 564013 . - . ID=CGI_10025775; scaffold619 WUBlastX DNA_IS4EU 563624 564013 72 - . . scaffold619 flankbed promoter 912638 912748 . + . ID=CGI_10025791; scaffold619 TRF Tandem_Repeat 912638 912748 168 + . . scaffold619 flankbed promoter 971743 971769 . + . ID=CGI_10025795; scaffold619 TRF Tandem_Repeat 971743 971769 54 + . . scaffold619 flankbed promoter 1057066 1057101 . - . ID=CGI_10025798; scaffold619 TRF Tandem_Repeat 1057066 1057101 72 + . . scaffold619 flankbed promoter 1057066 1057101 . - . ID=CGI_10025799; scaffold619 TRF Tandem_Repeat 1057066 1057101 72 + . . scaffold62 flankbed promoter 27118 27321 . - . ID=CGI_10015703; scaffold62 TRF Tandem_Repeat 27118 27321 142 + . . scaffold62 flankbed promoter 27538 27854 . - . ID=CGI_10015703; scaffold62 TRF Tandem_Repeat 27538 27978 586 + . . scaffold62 flankbed promoter 162593 162628 . - . ID=CGI_10015707; scaffold62 TRF Tandem_Repeat 162593 162628 63 + . . scaffold62 flankbed promoter 163069 163108 . - . ID=CGI_10015707; scaffold62 TRF Tandem_Repeat 163069 163108 53 + . . scaffold62 flankbed promoter 183578 183666 . - . ID=CGI_10015709; scaffold62 TRF Tandem_Repeat 183578 183666 126 + . . scaffold62 flankbed promoter 183573 183674 . - . ID=CGI_10015709; scaffold62 TRF Tandem_Repeat 183573 183674 77 + . . scaffold62 flankbed promoter 349175 349207 . - . ID=CGI_10015719; scaffold62 TRF Tandem_Repeat 349175 349207 66 + . . scaffold621 flankbed promoter 240433 240549 . - . ID=CGI_10017675; scaffold621 TRF Tandem_Repeat 240433 240549 141 + . . scaffold621 flankbed promoter 316984 317430 . - . ID=CGI_10017677; scaffold621 WUBlastX DNA_Academ 316984 317430 298 - . . scaffold621 flankbed promoter 317387 317626 . - . ID=CGI_10017677; scaffold621 WUBlastX DNA_Academ 317387 317626 71 - . . scaffold621 flankbed promoter 317641 317930 . - . ID=CGI_10017677; scaffold621 WUBlastX DNA_Academ 317641 318339 149 - . . scaffold621 flankbed promoter 316931 316969 . - . ID=CGI_10017677; scaffold621 WUBlastX DNA_Academ 316211 316969 149 - . . scaffold621 flankbed promoter 317659 317930 . - . ID=CGI_10017677; scaffold621 WUBlastX DNA_Academ 317659 318882 48 - . . scaffold621 flankbed promoter 318607 318882 . + . ID=CGI_10017678; scaffold621 WUBlastX DNA_Academ 317659 318882 48 - . . scaffold622 flankbed promoter 82255 82346 . - . ID=CGI_10018191; scaffold622 TRF Tandem_Repeat 82255 82346 103 + . . scaffold622 flankbed promoter 82255 82346 . + . ID=CGI_10018192; scaffold622 TRF Tandem_Repeat 82255 82346 103 + . . scaffold622 flankbed promoter 194547 194717 . - . ID=CGI_10018201; scaffold622 WUBlastX LINE_L1-Tx1 194547 194717 62 + . . scaffold622 flankbed promoter 194574 194717 . - . ID=CGI_10018201; scaffold622 WUBlastX LINE_L1-Tx1 194574 194717 64 + . . scaffold622 flankbed promoter 194713 195097 . - . ID=CGI_10018201; scaffold622 WUBlastX LINE_L1-Tx1 194713 196269 840 + . . scaffold622 flankbed promoter 420777 420836 . + . ID=CGI_10018215; scaffold622 TRF Tandem_Repeat 420777 420836 120 + . . scaffold625 flankbed promoter 315266 315365 . + . ID=CGI_10023413; scaffold625 TRF Tandem_Repeat 315266 315365 101 + . . scaffold625 flankbed promoter 395097 395245 . - . ID=CGI_10023416; scaffold625 TRF Tandem_Repeat 395097 395245 77 + . . scaffold625 flankbed promoter 676917 676922 . - . ID=CGI_10023430; scaffold625 TRF Tandem_Repeat 676917 676990 103 + . . scaffold626 flankbed promoter 213279 213349 . + . ID=CGI_10019990; scaffold626 TRF Tandem_Repeat 213279 213349 135 + . . scaffold626 flankbed promoter 556073 556217 . - . ID=CGI_10020004; scaffold626 TRF Tandem_Repeat 556073 556217 184 + . . scaffold626 flankbed promoter 556233 556258 . - . ID=CGI_10020004; scaffold626 TRF Tandem_Repeat 556233 556258 52 + . . scaffold63 flankbed promoter 27499 27537 . - . ID=CGI_10017264; scaffold63 TRF Tandem_Repeat 27499 27537 78 + . . scaffold63 flankbed promoter 71689 71733 . - . ID=CGI_10017266; scaffold63 TRF Tandem_Repeat 71689 71733 90 + . . scaffold63 flankbed promoter 417499 418320 . + . ID=CGI_10017282; scaffold63 WUBlastX DNA_En-Spm 417499 418320 195 + . . scaffold63 flankbed promoter 417402 418191 . + . ID=CGI_10017282; scaffold63 WUBlastX DNA_En-Spm 417157 418191 301 + . . scaffold63 flankbed promoter 417402 418401 . + . ID=CGI_10017282; scaffold63 WUBlastX DNA_En-Spm 417322 418569 169 + . . scaffold63 flankbed promoter 455936 456316 . - . ID=CGI_10017285; scaffold63 WUBlastX LINE_L1-Tx1 455936 456316 204 + . . scaffold63 flankbed promoter 455873 456343 . - . ID=CGI_10017285; scaffold63 WUBlastX LINE_L1-Tx1 455873 456343 85 + . . scaffold63 flankbed promoter 456331 456377 . - . ID=CGI_10017285; scaffold63 WUBlastX LINE_L1-Tx1 456331 458145 340 + . . scaffold630 flankbed promoter 127645 127695 . - . ID=CGI_10018327; scaffold630 TRF Tandem_Repeat 127645 127695 102 + . . scaffold630 flankbed promoter 241041 241095 . - . ID=CGI_10018329; scaffold630 TRF Tandem_Repeat 241041 241095 110 + . . scaffold630 flankbed promoter 441367 441495 . + . ID=CGI_10018336; scaffold630 TRF Tandem_Repeat 441367 441495 165 + . . scaffold630 flankbed promoter 491336 491449 . + . ID=CGI_10018340; scaffold630 WUBlastX LTR_DIRS 490967 491449 26 + . . scaffold630 flankbed promoter 491458 491991 . + . ID=CGI_10018340; scaffold630 WUBlastX LTR_DIRS 491458 491991 126 + . . scaffold631 flankbed promoter 60781 61041 . + . ID=CGI_10014168; scaffold631 WUBlastX DNA_Harbinger 60781 61041 82 + . . scaffold631 flankbed promoter 84115 84170 . - . ID=CGI_10014169; scaffold631 TRF Tandem_Repeat 84115 84170 112 + . . scaffold631 flankbed promoter 146243 146295 . - . ID=CGI_10014172; scaffold631 TRF Tandem_Repeat 146243 146295 106 + . . scaffold631 flankbed promoter 146393 146592 . - . ID=CGI_10014172; scaffold631 WUBlastX LINE_L1-Tx1 146393 147592 96 - . . scaffold631 flankbed promoter 200962 200995 . - . ID=CGI_10014175; scaffold631 TRF Tandem_Repeat 200962 200995 68 + . . scaffold631 flankbed promoter 277702 278074 . + . ID=CGI_10014182; scaffold631 WUBlastX LINE_RTE-BovB 277691 278074 179 - . . scaffold631 flankbed promoter 277703 278152 . + . ID=CGI_10014182; scaffold631 WUBlastX LINE_RTE-BovB 277703 278152 139 - . . scaffold631 flankbed promoter 317339 317638 . - . ID=CGI_10014187; scaffold631 WUBlastX LINE_I 317339 317638 62 - . . scaffold631 flankbed promoter 317000 317551 . - . ID=CGI_10014187; scaffold631 WUBlastX LINE_RTE-X 314264 317551 813 - . . scaffold631 flankbed promoter 317606 317999 . - . ID=CGI_10014187; scaffold631 WUBlastX LINE_L1 317606 318490 278 - . . scaffold631 flankbed promoter 362205 362648 . + . ID=CGI_10014192; scaffold631 WUBlastX LINE_RTE-X 362205 362648 129 - . . scaffold632 flankbed promoter 93211 93619 . + . ID=CGI_10018438; scaffold632 WUBlastX LINE_CR1 93209 93619 39 + . . scaffold632 flankbed promoter 94157 94210 . + . ID=CGI_10018438; scaffold632 WUBlastX LTR_Pao 94157 94276 32 + . . scaffold632 flankbed promoter 270862 271392 . + . ID=CGI_10018450; scaffold632 WUBlastX LINE_L1 270862 271392 234 + . . scaffold632 flankbed promoter 271793 271858 . + . ID=CGI_10018450; scaffold632 WUBlastX LINE_RTE-X 271793 274405 843 + . . scaffold632 flankbed promoter 270859 271413 . + . ID=CGI_10018450; scaffold632 WUBlastX LINE_L1 270724 271413 174 + . . scaffold632 flankbed promoter 271612 271782 . + . ID=CGI_10018450; scaffold632 WUBlastX LINE_RTE-X 271612 271782 68 + . . scaffold632 flankbed promoter 270859 271557 . + . ID=CGI_10018450; scaffold632 WUBlastX LINE_L1 270769 271557 59 + . . scaffold632 flankbed promoter 270859 271341 . + . ID=CGI_10018450; scaffold632 WUBlastX LINE_L1 270550 271341 109 + . . scaffold632 flankbed promoter 271588 271800 . + . ID=CGI_10018450; scaffold632 WUBlastX LINE_RTE-X 271588 271800 66 + . . scaffold632 flankbed promoter 314609 314655 . + . ID=CGI_10018454; scaffold632 TRF Tandem_Repeat 314609 314655 94 + . . scaffold634 flankbed promoter 16755 16779 . - . ID=CGI_10004699; scaffold634 TRF Tandem_Repeat 16755 16779 50 + . . scaffold635 flankbed promoter 124601 124640 . - . ID=CGI_10008922; scaffold635 TRF Tandem_Repeat 124601 124640 71 + . . scaffold643 flankbed promoter 43298 43340 . + . ID=CGI_10002917; scaffold643 TRF Tandem_Repeat 43298 43340 52 + . . scaffold643 flankbed promoter 55289 55372 . + . ID=CGI_10002918; scaffold643 TRF Tandem_Repeat 54852 55372 730 + . . scaffold643 flankbed promoter 55289 55455 . + . ID=CGI_10002918; scaffold643 TRF Tandem_Repeat 54852 55455 732 + . . scaffold643 flankbed promoter 55289 55457 . + . ID=CGI_10002918; scaffold643 TRF Tandem_Repeat 55017 55457 261 + . . scaffold643 flankbed promoter 55289 55457 . + . ID=CGI_10002918; scaffold643 TRF Tandem_Repeat 55101 55457 354 + . . scaffold644 flankbed promoter 8873 8927 . - . ID=CGI_10004147; scaffold644 TRF Tandem_Repeat 8873 8927 110 + . . scaffold644 flankbed promoter 35559 35780 . - . ID=CGI_10004150; scaffold644 TRF Tandem_Repeat 35559 35780 345 + . . scaffold645 flankbed promoter 1 713 . + . ID=CGI_10003781; scaffold645 TRF Tandem_Repeat 1 713 1150 + . . scaffold645 flankbed promoter 1 713 . + . ID=CGI_10003781; scaffold645 TRF Tandem_Repeat 1 713 1304 + . . scaffold647 flankbed promoter 101607 101674 . + . ID=CGI_10006929; scaffold647 TRF Tandem_Repeat 101607 101674 102 + . . scaffold65 flankbed promoter 71944 72100 . + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 71944 72100 278 + . . scaffold654 flankbed promoter 47773 47842 . - . ID=CGI_10004184; scaffold654 TRF Tandem_Repeat 47773 47842 65 + . . scaffold654 flankbed promoter 47767 47842 . - . ID=CGI_10004184; scaffold654 TRF Tandem_Repeat 47767 47842 84 + . . scaffold654 flankbed promoter 48326 48583 . - . ID=CGI_10004184; scaffold654 WUBlastX DNA_Maverick 48326 48583 103 - . . scaffold654 flankbed promoter 48200 48541 . - . ID=CGI_10004184; scaffold654 WUBlastX DNA_Maverick 48200 48541 54 - . . scaffold654 flankbed promoter 48257 48544 . - . ID=CGI_10004184; scaffold654 WUBlastX DNA_Maverick 48257 48544 74 - . . scaffold654 flankbed promoter 48588 48684 . - . ID=CGI_10004184; scaffold654 WUBlastX DNA_Maverick 48588 49232 376 - . . scaffold655 flankbed promoter 76209 76246 . - . ID=CGI_10014948; scaffold655 TRF Tandem_Repeat 76209 76246 67 + . . scaffold655 flankbed promoter 150522 150548 . - . ID=CGI_10014949; scaffold655 TRF Tandem_Repeat 150522 150548 54 + . . scaffold655 flankbed promoter 150591 150641 . - . ID=CGI_10014949; scaffold655 TRF Tandem_Repeat 150591 150641 93 + . . scaffold655 flankbed promoter 222104 222370 . - . ID=CGI_10014954; scaffold655 WUBlastX LINE_R2-Hero 222104 222370 125 - . . scaffold655 flankbed promoter 411920 411964 . - . ID=CGI_10014963; scaffold655 TRF Tandem_Repeat 411920 411977 57 + . . scaffold655 flankbed promoter 410965 410994 . - . ID=CGI_10014963; scaffold655 WUBlastX LTR_Gypsy 409987 410994 637 - . . scaffold658 flankbed promoter 126434 126516 . - . ID=CGI_10018964; scaffold658 TRF Tandem_Repeat 126434 126516 94 + . . scaffold658 flankbed promoter 227316 227396 . + . ID=CGI_10018968; scaffold658 TRF Tandem_Repeat 227303 227396 179 + . . scaffold658 flankbed promoter 387290 387553 . - . ID=CGI_10018971; scaffold658 WUBlastX LINE_L2 387290 387553 83 - . . scaffold658 flankbed promoter 387556 387990 . - . ID=CGI_10018971; scaffold658 WUBlastX LINE_L2 387556 388242 401 - . . scaffold658 flankbed promoter 387631 387990 . - . ID=CGI_10018971; scaffold658 WUBlastX LINE_CR1-L2 387631 388392 259 - . . scaffold658 flankbed promoter 440516 440599 . - . ID=CGI_10018975; scaffold658 WUBlastX LINE_RTE-X 439955 440599 208 - . . scaffold659 flankbed promoter 93127 93144 . - . ID=CGI_10014694; scaffold659 WUBlastX DNA_MuDR 92785 93144 61 - . . scaffold659 flankbed promoter 362603 362646 . - . ID=CGI_10014714; scaffold659 WUBlastX LINE_L2 362603 362725 71 + . . scaffold659 flankbed promoter 362603 362646 . - . ID=CGI_10014714; scaffold659 WUBlastX LINE_L2 362603 362845 57 + . . scaffold659 flankbed promoter 362519 362646 . - . ID=CGI_10014714; scaffold659 WUBlastX LINE_CR1 362519 362716 54 + . . scaffold660 flankbed promoter 98898 99359 . - . ID=CGI_10013749; scaffold660 WUBlastX LINE_L1-Tx1 98898 99359 81 - . . scaffold660 flankbed promoter 98868 99278 . - . ID=CGI_10013749; scaffold660 WUBlastX LINE_L1-Tx1 98868 99278 108 - . . scaffold660 flankbed promoter 200653 200952 . + . ID=CGI_10013753; scaffold660 WUBlastX DNA_hAT-Tip100 200653 200952 28 + . . scaffold660 flankbed promoter 200976 201092 . + . ID=CGI_10013753; scaffold660 WUBlastX DNA_hAT-Tip100 200976 201092 42 + . . scaffold660 flankbed promoter 201430 201435 . + . ID=CGI_10013753; scaffold660 WUBlastX DNA_hAT-Tip100 201430 201957 77 + . . scaffold660 flankbed promoter 201325 201435 . + . ID=CGI_10013753; scaffold660 WUBlastX DNA_hAT-Tip100 201325 201957 27 + . . scaffold660 flankbed promoter 211702 211738 . + . ID=CGI_10013754; scaffold660 TRF Tandem_Repeat 211663 211738 68 + . . scaffold660 flankbed promoter 211702 211729 . + . ID=CGI_10013754; scaffold660 TRF Tandem_Repeat 211663 211729 66 + . . scaffold660 flankbed promoter 211702 211738 . + . ID=CGI_10013754; scaffold660 TRF Tandem_Repeat 211664 211738 69 + . . scaffold660 flankbed promoter 211702 211729 . + . ID=CGI_10013754; scaffold660 TRF Tandem_Repeat 211665 211729 53 + . . scaffold660 flankbed promoter 272752 272940 . - . ID=CGI_10013757; scaffold660 TRF Tandem_Repeat 272752 272940 360 + . . scaffold661 flankbed promoter 29794 30585 . - . ID=CGI_10001833; scaffold661 WUBlastX LINE_L1-Tx1 29794 30768 186 + . . scaffold661 flankbed promoter 29639 29728 . - . ID=CGI_10001833; scaffold661 WUBlastX LINE_CR1 29639 29728 28 + . . scaffold661 flankbed promoter 29645 29713 . - . ID=CGI_10001833; scaffold661 WUBlastX LINE_L1 29645 29713 28 + . . scaffold663 flankbed promoter 82252 82300 . - . ID=CGI_10005262; scaffold663 TRF Tandem_Repeat 82252 82300 98 + . . scaffold663 flankbed promoter 104457 104693 . - . ID=CGI_10005264; scaffold663 WUBlastX LTR_Gypsy 100758 104693 2986 - . . scaffold664 flankbed promoter 120019 120308 . - . ID=CGI_10021436; scaffold664 TRF Tandem_Repeat 120019 120308 110 + . . scaffold664 flankbed promoter 119995 120392 . - . ID=CGI_10021436; scaffold664 TRF Tandem_Repeat 119995 120392 539 + . . scaffold664 flankbed promoter 213358 213414 . + . ID=CGI_10021440; scaffold664 WUBlastX DNA_Sola 213358 215217 845 + . . scaffold664 flankbed promoter 221013 221303 . - . ID=CGI_10021441; scaffold664 WUBlastX LINE_CR1 221013 221303 74 - . . scaffold664 flankbed promoter 220944 221450 . - . ID=CGI_10021441; scaffold664 WUBlastX LINE_L1-Tx1 220944 221450 29 - . . scaffold664 flankbed promoter 301033 301223 . + . ID=CGI_10021446; scaffold664 WUBlastX LTR_Ngaro 300918 301223 119 - . . scaffold664 flankbed promoter 301352 301555 . + . ID=CGI_10021446; scaffold664 WUBlastX LTR_Ngaro 301352 301555 33 - . . scaffold664 flankbed promoter 301033 301301 . + . ID=CGI_10021446; scaffold664 WUBlastX LTR_Ngaro 300912 301301 107 - . . scaffold664 flankbed promoter 301352 301474 . + . ID=CGI_10021446; scaffold664 WUBlastX LTR_Ngaro 301352 301474 36 - . . scaffold664 flankbed promoter 448337 448387 . - . ID=CGI_10021450; scaffold664 TRF Tandem_Repeat 448337 448387 102 + . . scaffold664 flankbed promoter 472294 472446 . - . ID=CGI_10021451; scaffold664 WUBlastX LTR_Gypsy 472294 472446 41 - . . scaffold664 flankbed promoter 472255 472452 . - . ID=CGI_10021451; scaffold664 WUBlastX LTR_Gypsy 472255 472452 26 - . . scaffold664 flankbed promoter 503420 503500 . - . ID=CGI_10021453; scaffold664 WUBlastX LINE_RTE-X 503216 503500 76 - . . scaffold664 flankbed promoter 503420 503503 . - . ID=CGI_10021453; scaffold664 WUBlastX LINE_RTE-X 503138 503503 52 - . . scaffold667 flankbed promoter 52371 52451 . - . ID=CGI_10005356; scaffold667 TRF Tandem_Repeat 52371 52451 72 + . . scaffold67 flankbed promoter 114206 114246 . - . ID=CGI_10018266; scaffold67 TRF Tandem_Repeat 114206 114246 82 + . . scaffold67 flankbed promoter 465346 465379 . - . ID=CGI_10018276; scaffold67 TRF Tandem_Repeat 465346 465379 50 + . . scaffold67 flankbed promoter 465346 465379 . + . ID=CGI_10018277; scaffold67 TRF Tandem_Repeat 465346 465379 50 + . . scaffold670 flankbed promoter 20009 20083 . + . ID=CGI_10007407; scaffold670 TRF Tandem_Repeat 20009 20083 150 + . . scaffold670 flankbed promoter 50740 50763 . - . ID=CGI_10007408; scaffold670 WUBlastX DNA_MuDR 50740 50934 71 - . . scaffold670 flankbed promoter 50740 50763 . - . ID=CGI_10007408; scaffold670 WUBlastX DNA 50740 51012 30 - . . scaffold672 flankbed promoter 17025 17585 . - . ID=CGI_10021021; scaffold672 WUBlastX LINE_RTE-BovB 17025 17585 280 + . . scaffold672 flankbed promoter 210330 210376 . - . ID=CGI_10021028; scaffold672 TRF Tandem_Repeat 210330 210376 94 + . . scaffold672 flankbed promoter 213968 214003 . - . ID=CGI_10021029; scaffold672 TRF Tandem_Repeat 213968 214003 72 + . . scaffold672 flankbed promoter 430365 431364 . - . ID=CGI_10021041; scaffold672 WUBlastX LINE_L2 429198 431732 1382 - . . scaffold672 flankbed promoter 430365 431364 . - . ID=CGI_10021041; scaffold672 WUBlastX LINE_I 429552 432191 68 - . . scaffold675 flankbed promoter 4686 4724 . + . ID=CGI_10017852; scaffold675 TRF Tandem_Repeat 4686 4724 78 + . . scaffold675 flankbed promoter 31448 31495 . + . ID=CGI_10017853; scaffold675 TRF Tandem_Repeat 31448 31495 96 + . . scaffold675 flankbed promoter 117105 117904 . - . ID=CGI_10017856; scaffold675 TRF Tandem_Repeat 117105 118001 1440 + . . scaffold675 flankbed promoter 126987 127204 . + . ID=CGI_10017857; scaffold675 TRF Tandem_Repeat 126987 127204 355 + . . scaffold675 flankbed promoter 183854 183883 . + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 183854 183883 51 + . . scaffold675 flankbed promoter 183413 183670 . + . ID=CGI_10017861; scaffold675 WUBlastX LTR_Gypsy 183071 183670 222 - . . scaffold675 flankbed promoter 183413 183565 . + . ID=CGI_10017861; scaffold675 WUBlastX LTR_Gypsy 182504 183565 635 - . . scaffold675 flankbed promoter 183938 184015 . + . ID=CGI_10017861; scaffold675 WUBlastX LTR_Gypsy 183938 184015 23 - . . scaffold676 flankbed promoter 174028 174044 . - . ID=CGI_10021419; scaffold676 TRF Tandem_Repeat 174028 174076 98 + . . scaffold676 flankbed promoter 439596 439752 . - . ID=CGI_10021427; scaffold676 TRF Tandem_Repeat 439596 439752 79 + . . scaffold676 flankbed promoter 508831 508902 . - . ID=CGI_10021430; scaffold676 TRF Tandem_Repeat 508831 508902 63 + . . scaffold678 flankbed promoter 260539 260780 . + . ID=CGI_10026345; scaffold678 TRF Tandem_Repeat 260539 260816 466 + . . scaffold678 flankbed promoter 393872 394091 . + . ID=CGI_10026356; scaffold678 WUBlastX LTR_Gypsy 393872 394105 33 + . . scaffold678 flankbed promoter 393725 394057 . + . ID=CGI_10026356; scaffold678 WUBlastX LTR_Gypsy 393725 394057 109 + . . scaffold678 flankbed promoter 393092 394006 . + . ID=CGI_10026356; scaffold678 WUBlastX LTR_Gypsy 392936 394006 277 + . . scaffold678 flankbed promoter 393092 393997 . + . ID=CGI_10026356; scaffold678 WUBlastX LTR_Gypsy-Cigr 391940 393997 247 + . . scaffold678 flankbed promoter 423640 423711 . - . ID=CGI_10026357; scaffold678 TRF Tandem_Repeat 423640 423711 144 + . . scaffold678 flankbed promoter 411084 411215 . + . ID=CGI_10026358; scaffold678 TRF Tandem_Repeat 411084 411215 221 + . . scaffold678 flankbed promoter 437483 437636 . + . ID=CGI_10026360; scaffold678 TRF Tandem_Repeat 437483 437636 132 + . . scaffold678 flankbed promoter 437718 437809 . + . ID=CGI_10026360; scaffold678 TRF Tandem_Repeat 437718 437809 85 + . . scaffold678 flankbed promoter 505024 505132 . + . ID=CGI_10026363; scaffold678 TRF Tandem_Repeat 505024 505132 101 + . . scaffold678 flankbed promoter 665219 665664 . - . ID=CGI_10026369; scaffold678 WUBlastX LINE_Penelope 665219 665704 39 - . . scaffold678 flankbed promoter 698458 698772 . + . ID=CGI_10026372; scaffold678 TRF Tandem_Repeat 696692 698772 3653 + . . scaffold678 flankbed promoter 843928 843961 . + . ID=CGI_10026383; scaffold678 TRF Tandem_Repeat 843928 843961 59 + . . scaffold678 flankbed promoter 1141174 1141203 . + . ID=CGI_10026399; scaffold678 TRF Tandem_Repeat 1141174 1141203 60 + . . scaffold678 flankbed promoter 1160793 1160840 . - . ID=CGI_10026401; scaffold678 TRF Tandem_Repeat 1160793 1160840 96 + . . scaffold681 flankbed promoter 26385 27062 . + . ID=CGI_10014717; scaffold681 WUBlastX LINE_RTE-X 25470 27062 717 + . . scaffold681 flankbed promoter 56298 56574 . + . ID=CGI_10014721; scaffold681 TRF Tandem_Repeat 56298 56574 350 + . . scaffold681 flankbed promoter 56298 56585 . + . ID=CGI_10014721; scaffold681 TRF Tandem_Repeat 56298 56585 340 + . . scaffold681 flankbed promoter 91266 91334 . - . ID=CGI_10014725; scaffold681 TRF Tandem_Repeat 91266 91334 97 + . . scaffold681 flankbed promoter 268683 268974 . - . ID=CGI_10014732; scaffold681 WUBlastX DNA_P 268683 269009 101 - . . scaffold681 flankbed promoter 295025 295063 . - . ID=CGI_10014734; scaffold681 TRF Tandem_Repeat 295025 295063 69 + . . scaffold681 flankbed promoter 295283 295327 . - . ID=CGI_10014734; scaffold681 WUBlastX LINE_Jockey 295283 295630 35 + . . scaffold683 flankbed promoter 229525 229563 . + . ID=CGI_10010361; scaffold683 TRF Tandem_Repeat 229525 229563 60 + . . scaffold685 flankbed promoter 52660 52998 . + . ID=CGI_10004491; scaffold685 WUBlastX LINE_RTE-X 52660 52998 192 - . . scaffold685 flankbed promoter 52995 53095 . + . ID=CGI_10004491; scaffold685 WUBlastX LINE_RTE-X 52995 53186 37 - . . scaffold685 flankbed promoter 52579 52983 . + . ID=CGI_10004491; scaffold685 WUBlastX LINE_RTE-X 52579 52983 80 - . . scaffold685 flankbed promoter 82408 82411 . + . ID=CGI_10004493; scaffold685 WUBlastX LTR_Pao 80891 82411 113 + . . scaffold685 flankbed promoter 82408 82417 . + . ID=CGI_10004493; scaffold685 WUBlastX LTR_Pao 81152 82417 117 + . . scaffold686 flankbed promoter 6094 6420 . - . ID=CGI_10004460; scaffold686 TRF Tandem_Repeat 6094 6420 398 + . . scaffold689 flankbed promoter 118421 118435 . - . ID=CGI_10014824; scaffold689 WUBlastX LINE_RTE-X 118058 118435 149 - . . scaffold689 flankbed promoter 118458 118613 . - . ID=CGI_10014824; scaffold689 WUBlastX LINE_RTE-X 118458 118613 107 - . . scaffold689 flankbed promoter 292710 292753 . - . ID=CGI_10014830; scaffold689 TRF Tandem_Repeat 292710 292753 61 + . . scaffold689 flankbed promoter 408973 409004 . + . ID=CGI_10014834; scaffold689 TRF Tandem_Repeat 408973 409004 64 + . . scaffold695 flankbed promoter 3125 3149 . + . ID=CGI_10023266; scaffold695 WUBlastX DNA_Harbinger 2949 3149 90 + . . scaffold695 flankbed promoter 3798 3905 . + . ID=CGI_10023266; scaffold695 WUBlastX DNA_Harbinger 3798 3905 30 + . . scaffold695 flankbed promoter 172729 172767 . - . ID=CGI_10023271; scaffold695 TRF Tandem_Repeat 172729 172822 55 + . . scaffold695 flankbed promoter 195144 195199 . - . ID=CGI_10023273; scaffold695 TRF Tandem_Repeat 195144 195199 112 + . . scaffold695 flankbed promoter 195226 195257 . - . ID=CGI_10023273; scaffold695 TRF Tandem_Repeat 195226 195257 64 + . . scaffold695 flankbed promoter 350654 350866 . + . ID=CGI_10023282; scaffold695 WUBlastX LTR_Gypsy 350630 350866 66 + . . scaffold695 flankbed promoter 350654 350848 . + . ID=CGI_10023282; scaffold695 WUBlastX LTR_Gypsy 350273 350848 56 + . . scaffold695 flankbed promoter 589719 589753 . - . ID=CGI_10023294; scaffold695 TRF Tandem_Repeat 589719 589753 52 + . . scaffold695 flankbed promoter 758930 758979 . + . ID=CGI_10023306; scaffold695 TRF Tandem_Repeat 758930 758979 100 + . . scaffold696 flankbed promoter 7436 7486 . + . ID=CGI_10003719; scaffold696 TRF Tandem_Repeat 7436 7486 93 + . . scaffold696 flankbed promoter 79010 79089 . - . ID=CGI_10003723; scaffold696 TRF Tandem_Repeat 79010 80007 1271 + . . scaffold698 flankbed promoter 214942 215398 . + . ID=CGI_10020736; scaffold698 WUBlastX LINE_L1-Tx1 214403 215398 197 - . . scaffold698 flankbed promoter 253420 253479 . + . ID=CGI_10020739; scaffold698 TRF Tandem_Repeat 253420 253479 56 + . . scaffold698 flankbed promoter 369453 369485 . - . ID=CGI_10020743; scaffold698 TRF Tandem_Repeat 369453 369485 66 + . . scaffold698 flankbed promoter 592092 592118 . - . ID=CGI_10020756; scaffold698 TRF Tandem_Repeat 592092 592118 54 + . . scaffold698 flankbed promoter 592335 592723 . - . ID=CGI_10020756; scaffold698 TRF Tandem_Repeat 592335 592723 316 + . . scaffold698 flankbed promoter 592332 592742 . - . ID=CGI_10020756; scaffold698 TRF Tandem_Repeat 592332 592742 399 + . . scaffold698 flankbed promoter 592395 592714 . - . ID=CGI_10020756; scaffold698 TRF Tandem_Repeat 592395 592714 502 + . . scaffold698 flankbed promoter 592691 592750 . - . ID=CGI_10020756; scaffold698 TRF Tandem_Repeat 592691 592750 66 + . . scaffold698 flankbed promoter 658955 659043 . - . ID=CGI_10020758; scaffold698 TRF Tandem_Repeat 658955 659043 65 + . . scaffold70 flankbed promoter 5711 5816 . - . ID=CGI_10024750; scaffold70 WUBlastX LTR_Gypsy 5711 5899 28 - . . scaffold70 flankbed promoter 120005 120889 . + . ID=CGI_10024755; scaffold70 WUBlastX DNA_TcMar-m44 120005 120889 559 + . . scaffold70 flankbed promoter 161739 162015 . + . ID=CGI_10024759; scaffold70 WUBlastX LINE_RTE-BovB 161476 162015 295 + . . scaffold70 flankbed promoter 162009 162356 . + . ID=CGI_10024759; scaffold70 WUBlastX LINE_RTE-BovB 162009 162356 216 + . . scaffold70 flankbed promoter 234371 234396 . + . ID=CGI_10024761; scaffold70 TRF Tandem_Repeat 234371 234396 52 + . . scaffold70 flankbed promoter 452799 453017 . - . ID=CGI_10024769; scaffold70 WUBlastX LTR_Gypsy 452799 453017 46 - . . scaffold70 flankbed promoter 452751 452999 . - . ID=CGI_10024769; scaffold70 WUBlastX LTR_Gypsy 452751 452999 44 - . . scaffold70 flankbed promoter 527825 527906 . + . ID=CGI_10024776; scaffold70 TRF Tandem_Repeat 527825 527906 92 + . . scaffold70 flankbed promoter 527843 527956 . + . ID=CGI_10024776; scaffold70 TRF Tandem_Repeat 527843 527956 84 + . . scaffold70 flankbed promoter 722567 722610 . - . ID=CGI_10024789; scaffold70 TRF Tandem_Repeat 722567 722610 88 + . . scaffold700 flankbed promoter 106159 106865 . - . ID=CGI_10006011; scaffold700 WUBlastX LTR_DIRS 106159 107592 825 + . . scaffold705 flankbed promoter 318786 318960 . - . ID=CGI_10015515; scaffold705 WUBlastX LTR_Gypsy 318745 318960 101 - . . scaffold705 flankbed promoter 318786 318960 . - . ID=CGI_10015515; scaffold705 WUBlastX LTR_Gypsy 318781 318960 110 - . . scaffold705 flankbed promoter 395870 395916 . + . ID=CGI_10015519; scaffold705 WUBlastX LTR_Gypsy-Cigr 395602 395916 32 + . . scaffold705 flankbed promoter 395870 395892 . + . ID=CGI_10015519; scaffold705 WUBlastX LTR_Gypsy-Cigr 395671 395892 98 + . . scaffold705 flankbed promoter 426174 426347 . - . ID=CGI_10015520; scaffold705 TRF Tandem_Repeat 426174 426347 195 + . . scaffold705 flankbed promoter 426174 426347 . - . ID=CGI_10015520; scaffold705 TRF Tandem_Repeat 426174 426347 195 + . . scaffold707 flankbed promoter 27985 28061 . + . ID=CGI_10007721; scaffold707 TRF Tandem_Repeat 27985 28061 50 + . . scaffold707 flankbed promoter 112132 112169 . - . ID=CGI_10007723; scaffold707 TRF Tandem_Repeat 112132 112169 76 + . . scaffold707 flankbed promoter 112673 112735 . - . ID=CGI_10007723; scaffold707 TRF Tandem_Repeat 112673 112735 94 + . . scaffold707 flankbed promoter 175194 175455 . - . ID=CGI_10007726; scaffold707 TRF Tandem_Repeat 175194 175455 212 + . . scaffold707 flankbed promoter 175184 175455 . - . ID=CGI_10007726; scaffold707 TRF Tandem_Repeat 175184 175455 187 + . . scaffold709 flankbed promoter 23924 24457 . + . ID=CGI_10020078; scaffold709 WUBlastX LINE_RTE-X 23924 24457 123 - . . scaffold709 flankbed promoter 23969 24364 . + . ID=CGI_10020078; scaffold709 WUBlastX LINE_RTE-X 23969 24364 147 - . . scaffold709 flankbed promoter 65020 65186 . - . ID=CGI_10020080; scaffold709 TRF Tandem_Repeat 65020 65186 298 + . . scaffold709 flankbed promoter 65459 65561 . - . ID=CGI_10020080; scaffold709 TRF Tandem_Repeat 65459 65561 188 + . . scaffold709 flankbed promoter 407509 407624 . + . ID=CGI_10020092; scaffold709 TRF Tandem_Repeat 407509 407624 86 + . . scaffold709 flankbed promoter 407514 407625 . + . ID=CGI_10020092; scaffold709 TRF Tandem_Repeat 407514 407625 104 + . . scaffold709 flankbed promoter 407509 407632 . + . ID=CGI_10020092; scaffold709 TRF Tandem_Repeat 407509 407632 84 + . . scaffold709 flankbed promoter 407546 407618 . + . ID=CGI_10020092; scaffold709 TRF Tandem_Repeat 407546 407618 75 + . . scaffold709 flankbed promoter 407515 407623 . + . ID=CGI_10020092; scaffold709 TRF Tandem_Repeat 407515 407623 66 + . . scaffold709 flankbed promoter 620950 620990 . + . ID=CGI_10020099; scaffold709 TRF Tandem_Repeat 620950 620990 82 + . . scaffold71 flankbed promoter 91456 91520 . + . ID=CGI_10015053; scaffold71 TRF Tandem_Repeat 91456 91520 130 + . . scaffold71 flankbed promoter 267268 267444 . + . ID=CGI_10015059; scaffold71 WUBlastX LINE_RTE-X 266857 267444 197 + . . scaffold71 flankbed promoter 267522 267875 . + . ID=CGI_10015059; scaffold71 WUBlastX LINE_RTE-X 267522 267875 46 + . . scaffold71 flankbed promoter 267268 267309 . + . ID=CGI_10015059; scaffold71 WUBlastX LINE_RTE-X 266857 267309 205 + . . scaffold71 flankbed promoter 267597 267902 . + . ID=CGI_10015059; scaffold71 WUBlastX LINE_RTE-X 267597 267902 88 + . . scaffold712 flankbed promoter 16897 17103 . - . ID=CGI_10016471; scaffold712 TRF Tandem_Repeat 16897 17103 265 + . . scaffold712 flankbed promoter 16897 17162 . - . ID=CGI_10016471; scaffold712 TRF Tandem_Repeat 16897 17162 274 + . . scaffold712 flankbed promoter 16897 17162 . - . ID=CGI_10016471; scaffold712 TRF Tandem_Repeat 16897 17162 320 + . . scaffold712 flankbed promoter 69097 69154 . + . ID=CGI_10016476; scaffold712 TRF Tandem_Repeat 69097 69154 116 + . . scaffold712 flankbed promoter 240414 240456 . - . ID=CGI_10016480; scaffold712 TRF Tandem_Repeat 240414 240456 86 + . . scaffold712 flankbed promoter 240454 240485 . - . ID=CGI_10016480; scaffold712 TRF Tandem_Repeat 240454 240485 64 + . . scaffold712 flankbed promoter 313920 313978 . + . ID=CGI_10016481; scaffold712 TRF Tandem_Repeat 313920 313978 102 + . . scaffold713 flankbed promoter 245715 245801 . - . ID=CGI_10017746; scaffold713 TRF Tandem_Repeat 245715 245801 104 + . . scaffold713 flankbed promoter 337487 337535 . + . ID=CGI_10017753; scaffold713 TRF Tandem_Repeat 337487 337535 98 + . . scaffold713 flankbed promoter 478807 478870 . - . ID=CGI_10017764; scaffold713 TRF Tandem_Repeat 478807 478870 121 + . . scaffold713 flankbed promoter 482595 482653 . + . ID=CGI_10017765; scaffold713 TRF Tandem_Repeat 482595 482653 118 + . . scaffold714 flankbed promoter 72192 72243 . + . ID=CGI_10016640; scaffold714 TRF Tandem_Repeat 72192 72243 104 + . . scaffold714 flankbed promoter 120751 120852 . + . ID=CGI_10016641; scaffold714 WUBlastX LTR_DIRS 120751 120852 23 + . . scaffold714 flankbed promoter 120843 121241 . + . ID=CGI_10016641; scaffold714 WUBlastX LTR_DIRS 120843 121241 135 + . . scaffold714 flankbed promoter 334249 334470 . + . ID=CGI_10016645; scaffold714 WUBlastX LTR_Gypsy 334249 334470 65 - . . scaffold715 flankbed promoter 2570 2701 . + . ID=CGI_10006595; scaffold715 WUBlastX LTR_DIRS 2570 2701 43 - . . scaffold718 flankbed promoter 106314 106347 . - . ID=CGI_10008419; scaffold718 TRF Tandem_Repeat 106314 106347 52 + . . scaffold718 flankbed promoter 161858 161922 . - . ID=CGI_10008422; scaffold718 TRF Tandem_Repeat 161858 161922 60 + . . scaffold719 flankbed promoter 54003 54051 . + . ID=CGI_10016000; scaffold719 TRF Tandem_Repeat 54003 54051 98 + . . scaffold719 flankbed promoter 178825 179424 . + . ID=CGI_10016004; scaffold719 WUBlastX DNA_Maverick 178825 179424 316 + . . scaffold719 flankbed promoter 350418 350474 . - . ID=CGI_10016007; scaffold719 WUBlastX DNA_MuDR 349866 350474 65 - . . scaffold72 flankbed promoter 26149 26211 . - . ID=CGI_10017834; scaffold72 TRF Tandem_Repeat 26149 26211 119 + . . scaffold72 flankbed promoter 35411 35529 . - . ID=CGI_10017835; scaffold72 TRF Tandem_Repeat 35411 35529 107 + . . scaffold72 flankbed promoter 34940 35041 . - . ID=CGI_10017835; scaffold72 WUBlastX LINE_L2 34940 35041 25 + . . scaffold72 flankbed promoter 202638 203346 . - . ID=CGI_10017840; scaffold72 WUBlastX LINE_L2 202638 203669 667 + . . scaffold721 flankbed promoter 695481 695666 . + . ID=CGI_10022021; scaffold721 TRF Tandem_Repeat 695481 695666 73 + . . scaffold721 flankbed promoter 695466 695652 . + . ID=CGI_10022021; scaffold721 TRF Tandem_Repeat 695466 695652 135 + . . scaffold721 flankbed promoter 695526 695676 . + . ID=CGI_10022021; scaffold721 TRF Tandem_Repeat 695526 695676 124 + . . scaffold721 flankbed promoter 695466 695666 . + . ID=CGI_10022021; scaffold721 TRF Tandem_Repeat 695466 695666 140 + . . scaffold721 flankbed promoter 710022 710082 . + . ID=CGI_10022022; scaffold721 WUBlastX LTR_Ngaro 709966 710082 28 - . . scaffold722 flankbed promoter 285560 285614 . - . ID=CGI_10012202; scaffold722 TRF Tandem_Repeat 285560 285614 110 + . . scaffold723 flankbed promoter 132135 132193 . - . ID=CGI_10015258; scaffold723 TRF Tandem_Repeat 132135 132193 109 + . . scaffold723 flankbed promoter 167422 167463 . + . ID=CGI_10015262; scaffold723 TRF Tandem_Repeat 167422 167463 84 + . . scaffold723 flankbed promoter 272480 272517 . - . ID=CGI_10015266; scaffold723 TRF Tandem_Repeat 272480 272517 67 + . . scaffold723 flankbed promoter 313432 313506 . + . ID=CGI_10015269; scaffold723 WUBlastX LINE_L1 313432 313908 51 + . . scaffold723 flankbed promoter 313240 313506 . + . ID=CGI_10015269; scaffold723 WUBlastX LINE_L1 313240 313758 46 + . . scaffold723 flankbed promoter 313432 313908 . + . ID=CGI_10015270; scaffold723 WUBlastX LINE_L1 313432 313908 51 + . . scaffold723 flankbed promoter 313240 313758 . + . ID=CGI_10015270; scaffold723 WUBlastX LINE_L1 313240 313758 46 + . . scaffold723 flankbed promoter 342060 342127 . + . ID=CGI_10015272; scaffold723 TRF Tandem_Repeat 342060 342127 136 + . . scaffold723 flankbed promoter 342413 342457 . + . ID=CGI_10015272; scaffold723 TRF Tandem_Repeat 342413 342457 90 + . . scaffold724 flankbed promoter 86107 86706 . - . ID=CGI_10011490; scaffold724 WUBlastX DNA_TcMar-Tc1 86107 87102 491 - . . scaffold724 flankbed promoter 164882 164920 . + . ID=CGI_10011497; scaffold724 TRF Tandem_Repeat 164882 164920 78 + . . scaffold728 flankbed promoter 228989 228997 . - . ID=CGI_10018233; scaffold728 TRF Tandem_Repeat 228989 229039 102 + . . scaffold728 flankbed promoter 237966 238004 . + . ID=CGI_10018234; scaffold728 TRF Tandem_Repeat 237966 238004 69 + . . scaffold728 flankbed promoter 252886 252926 . + . ID=CGI_10018236; scaffold728 TRF Tandem_Repeat 252886 252926 82 + . . scaffold728 flankbed promoter 283831 284073 . + . ID=CGI_10018237; scaffold728 WUBlastX LTR_Gypsy-Gmr1 283831 284073 48 + . . scaffold728 flankbed promoter 283386 283975 . + . ID=CGI_10018237; scaffold728 WUBlastX LTR_Gypsy 282305 283975 1020 + . . scaffold728 flankbed promoter 284115 284270 . + . ID=CGI_10018237; scaffold728 WUBlastX LTR_Gypsy 284115 284270 33 + . . scaffold728 flankbed promoter 437606 438181 . - . ID=CGI_10018243; scaffold728 WUBlastX DNA_En-Spm 437606 438181 104 + . . scaffold728 flankbed promoter 438102 438336 . - . ID=CGI_10018243; scaffold728 WUBlastX DNA_En-Spm 438102 438710 133 + . . scaffold728 flankbed promoter 437609 437998 . - . ID=CGI_10018243; scaffold728 WUBlastX DNA_En-Spm 437609 437998 175 + . . scaffold728 flankbed promoter 437516 437902 . - . ID=CGI_10018243; scaffold728 WUBlastX DNA_En-Spm 437516 437902 139 + . . scaffold728 flankbed promoter 516471 517187 . - . ID=CGI_10018246; scaffold728 WUBlastX LINE_CR1 516471 517187 166 - . . scaffold729 flankbed promoter 2332 2364 . - . ID=CGI_10001544; scaffold729 TRF Tandem_Repeat 2332 2364 66 + . . scaffold730 flankbed promoter 26592 26619 . + . ID=CGI_10019884; scaffold730 TRF Tandem_Repeat 26592 26619 56 + . . scaffold730 flankbed promoter 25638 25645 . + . ID=CGI_10019884; scaffold730 WUBlastX LTR_Gypsy 25568 25645 23 - . . scaffold730 flankbed promoter 25638 25778 . + . ID=CGI_10019884; scaffold730 WUBlastX LTR_Gypsy 25602 25778 23 - . . scaffold730 flankbed promoter 103009 103080 . - . ID=CGI_10019887; scaffold730 WUBlastX DNA_Maverick 102610 103080 23 - . . scaffold730 flankbed promoter 114456 114521 . + . ID=CGI_10019888; scaffold730 WUBlastX LINE_L1-Tx1 114456 114521 22 - . . scaffold733 flankbed promoter 27560 28483 . - . ID=CGI_10025861; scaffold733 WUBlastX LTR_Gypsy-Cigr 27560 28876 428 - . . scaffold733 flankbed promoter 27794 28483 . - . ID=CGI_10025861; scaffold733 WUBlastX LTR_Gypsy-Cigr 27794 30697 1245 - . . scaffold733 flankbed promoter 31895 32080 . + . ID=CGI_10025862; scaffold733 WUBlastX LTR_ERV1 31895 32080 34 - . . scaffold733 flankbed promoter 31940 32179 . + . ID=CGI_10025862; scaffold733 WUBlastX LTR_ERV1 31940 32179 36 - . . scaffold733 flankbed promoter 31943 32419 . + . ID=CGI_10025862; scaffold733 WUBlastX LTR_Copia 31943 32419 34 - . . scaffold733 flankbed promoter 49566 50158 . - . ID=CGI_10025863; scaffold733 WUBlastX LINE_L1-Tx1 49566 50495 214 - . . scaffold733 flankbed promoter 49242 49313 . - . ID=CGI_10025863; scaffold733 WUBlastX DNA_Maverick 49242 49313 55 - . . scaffold733 flankbed promoter 49159 49197 . - . ID=CGI_10025863; scaffold733 WUBlastX DNA_Maverick 49045 49197 60 - . . scaffold733 flankbed promoter 238020 238091 . - . ID=CGI_10025869; scaffold733 TRF Tandem_Repeat 238020 238091 108 + . . scaffold734 flankbed promoter 67432 67484 . + . ID=CGI_10003363; scaffold734 TRF Tandem_Repeat 67432 67484 90 + . . scaffold739 flankbed promoter 40934 40990 . + . ID=CGI_10004172; scaffold739 TRF Tandem_Repeat 40934 40990 53 + . . scaffold743 flankbed promoter 16956 17022 . - . ID=CGI_10008609; scaffold743 TRF Tandem_Repeat 16956 17022 134 + . . scaffold743 flankbed promoter 16956 17022 . + . ID=CGI_10008610; scaffold743 TRF Tandem_Repeat 16956 17022 134 + . . scaffold747 flankbed promoter 266207 266263 . - . ID=CGI_10017068; scaffold747 TRF Tandem_Repeat 266207 266263 114 + . . scaffold747 flankbed promoter 266415 266609 . - . ID=CGI_10017068; scaffold747 TRF Tandem_Repeat 266415 266609 234 + . . scaffold748 flankbed promoter 22423 22551 . + . ID=CGI_10012639; scaffold748 TRF Tandem_Repeat 22423 22551 174 + . . scaffold748 flankbed promoter 22689 22844 . + . ID=CGI_10012639; scaffold748 WUBlastX RC_Helitron 22689 22844 38 + . . scaffold748 flankbed promoter 22805 23245 . + . ID=CGI_10012639; scaffold748 WUBlastX RC_Helitron 22805 23245 53 + . . scaffold748 flankbed promoter 22805 23329 . + . ID=CGI_10012639; scaffold748 WUBlastX RC_Helitron 22805 23329 40 + . . scaffold75 flankbed promoter 125096 125134 . - . ID=CGI_10005794; scaffold75 TRF Tandem_Repeat 125096 125134 78 + . . scaffold750 flankbed promoter 34454 34745 . - . ID=CGI_10022206; scaffold750 WUBlastX LINE_L2 34454 34987 112 + . . scaffold750 flankbed promoter 34460 34745 . - . ID=CGI_10022206; scaffold750 WUBlastX LINE_CR1-L2 34460 34756 121 + . . scaffold750 flankbed promoter 80594 80687 . - . ID=CGI_10022209; scaffold750 TRF Tandem_Repeat 80594 80687 118 + . . scaffold750 flankbed promoter 80772 80863 . - . ID=CGI_10022209; scaffold750 TRF Tandem_Repeat 80772 80863 76 + . . scaffold750 flankbed promoter 97189 97214 . + . ID=CGI_10022213; scaffold750 TRF Tandem_Repeat 97189 97214 52 + . . scaffold750 flankbed promoter 224444 224764 . - . ID=CGI_10022216; scaffold750 WUBlastX LINE_L2 224444 224764 53 - . . scaffold750 flankbed promoter 611998 612053 . + . ID=CGI_10022226; scaffold750 TRF Tandem_Repeat 611998 612053 112 + . . scaffold750 flankbed promoter 625454 625480 . - . ID=CGI_10022227; scaffold750 TRF Tandem_Repeat 625454 625480 54 + . . scaffold750 flankbed promoter 625858 625895 . - . ID=CGI_10022227; scaffold750 TRF Tandem_Repeat 625858 625895 76 + . . scaffold750 flankbed promoter 625858 625895 . + . ID=CGI_10022228; scaffold750 TRF Tandem_Repeat 625858 625895 76 + . . scaffold751 flankbed promoter 117713 118057 . - . ID=CGI_10017387; scaffold751 WUBlastX LTR_Gypsy 117476 118057 64 - . . scaffold751 flankbed promoter 165801 165833 . - . ID=CGI_10017388; scaffold751 TRF Tandem_Repeat 165801 165833 66 + . . scaffold751 flankbed promoter 384596 384657 . - . ID=CGI_10017399; scaffold751 TRF Tandem_Repeat 384596 384657 108 + . . scaffold751 flankbed promoter 411577 411807 . + . ID=CGI_10017404; scaffold751 WUBlastX LINE_L2 411577 411807 75 + . . scaffold751 flankbed promoter 411538 411768 . + . ID=CGI_10017404; scaffold751 WUBlastX LINE_L2 411538 411768 54 + . . scaffold751 flankbed promoter 411625 411837 . + . ID=CGI_10017404; scaffold751 WUBlastX LINE_L2 411625 411837 79 + . . scaffold751 flankbed promoter 485292 485350 . - . ID=CGI_10017406; scaffold751 TRF Tandem_Repeat 485292 485350 55 + . . scaffold752 flankbed promoter 78122 78203 . - . ID=CGI_10010040; scaffold752 TRF Tandem_Repeat 78122 78203 112 + . . scaffold752 flankbed promoter 155057 155090 . - . ID=CGI_10010041; scaffold752 TRF Tandem_Repeat 155057 155090 52 + . . scaffold753 flankbed promoter 189756 189914 . - . ID=CGI_10014203; scaffold753 WUBlastX LINE_L1-Tx1 189756 189914 85 + . . scaffold753 flankbed promoter 223484 223858 . + . ID=CGI_10014206; scaffold753 TRF Tandem_Repeat 223484 223858 403 + . . scaffold754 flankbed promoter 22145 22315 . - . ID=CGI_10014061; scaffold754 WUBlastX LINE_RTE-X 22145 22315 110 - . . scaffold754 flankbed promoter 22318 22412 . - . ID=CGI_10014061; scaffold754 WUBlastX LINE_RTE-X 22318 23805 221 - . . scaffold754 flankbed promoter 22025 22321 . - . ID=CGI_10014061; scaffold754 WUBlastX LINE_RTE-X 22025 22321 80 - . . scaffold754 flankbed promoter 82449 83191 . - . ID=CGI_10014066; scaffold754 TRF Tandem_Repeat 82449 84082 2241 + . . scaffold754 flankbed promoter 82449 83191 . - . ID=CGI_10014066; scaffold754 TRF Tandem_Repeat 82449 84082 2289 + . . scaffold754 flankbed promoter 164374 164440 . - . ID=CGI_10014070; scaffold754 TRF Tandem_Repeat 164374 164440 52 + . . scaffold754 flankbed promoter 164374 164484 . - . ID=CGI_10014070; scaffold754 TRF Tandem_Repeat 164374 164484 52 + . . scaffold754 flankbed promoter 178294 178378 . - . ID=CGI_10014072; scaffold754 TRF Tandem_Repeat 178294 178480 306 + . . scaffold754 flankbed promoter 386049 386080 . - . ID=CGI_10014085; scaffold754 TRF Tandem_Repeat 386049 386080 55 + . . scaffold754 flankbed promoter 384371 384408 . + . ID=CGI_10014086; scaffold754 TRF Tandem_Repeat 384371 384408 76 + . . scaffold756 flankbed promoter 174175 174494 . + . ID=CGI_10016458; scaffold756 TRF Tandem_Repeat 174175 174494 159 + . . scaffold756 flankbed promoter 174186 174451 . + . ID=CGI_10016458; scaffold756 TRF Tandem_Repeat 174186 174451 238 + . . scaffold756 flankbed promoter 174175 174451 . + . ID=CGI_10016458; scaffold756 TRF Tandem_Repeat 174175 174451 195 + . . scaffold756 flankbed promoter 201489 201535 . + . ID=CGI_10016460; scaffold756 TRF Tandem_Repeat 201489 201535 85 + . . scaffold756 flankbed promoter 312059 312092 . - . ID=CGI_10016463; scaffold756 TRF Tandem_Repeat 312059 312092 50 + . . scaffold756 flankbed promoter 312175 312180 . - . ID=CGI_10016463; scaffold756 WUBlastX DNA_Merlin 312175 312441 98 + . . scaffold756 flankbed promoter 353438 354437 . - . ID=CGI_10016464; scaffold756 WUBlastX LTR_Gypsy 353249 355486 771 - . . scaffold756 flankbed promoter 353438 354403 . - . ID=CGI_10016464; scaffold756 WUBlastX LTR_Gypsy 353009 354403 277 - . . scaffold756 flankbed promoter 354155 354437 . - . ID=CGI_10016464; scaffold756 WUBlastX LTR_Gypsy 354155 355540 942 - . . scaffold759 flankbed promoter 100001 100113 . + . ID=CGI_10010775; scaffold759 WUBlastX LTR_Gypsy 99598 100113 95 - . . scaffold760 flankbed promoter 113110 113918 . - . ID=CGI_10023975; scaffold760 TRF Tandem_Repeat 113110 113918 744 + . . scaffold760 flankbed promoter 176291 176352 . + . ID=CGI_10023978; scaffold760 TRF Tandem_Repeat 176291 176352 79 + . . scaffold760 flankbed promoter 553940 553976 . + . ID=CGI_10023995; scaffold760 TRF Tandem_Repeat 553940 553976 74 + . . scaffold760 flankbed promoter 726395 726448 . - . ID=CGI_10024005; scaffold760 TRF Tandem_Repeat 726395 726448 108 + . . scaffold760 flankbed promoter 726395 726448 . + . ID=CGI_10024006; scaffold760 TRF Tandem_Repeat 726395 726448 108 + . . scaffold760 flankbed promoter 790746 791363 . + . ID=CGI_10024012; scaffold760 WUBlastX DNA_hAT 790746 791363 132 + . . scaffold767 flankbed promoter 232540 232575 . - . ID=CGI_10014844; scaffold767 TRF Tandem_Repeat 232540 232575 72 + . . scaffold767 flankbed promoter 313103 313121 . - . ID=CGI_10014847; scaffold767 TRF Tandem_Repeat 313103 313170 82 + . . scaffold767 flankbed promoter 407423 407454 . - . ID=CGI_10014852; scaffold767 TRF Tandem_Repeat 407423 407454 64 + . . scaffold77 flankbed promoter 466182 466466 . + . ID=CGI_10027981; scaffold77 WUBlastX LINE_L1-Tx1 466182 466466 58 + . . scaffold77 flankbed promoter 466143 466189 . + . ID=CGI_10027981; scaffold77 WUBlastX LINE_L1-Tx1 465500 466189 105 + . . scaffold77 flankbed promoter 634317 634412 . + . ID=CGI_10027986; scaffold77 WUBlastX LTR_Gypsy 634317 634637 40 + . . scaffold77 flankbed promoter 686868 686913 . - . ID=CGI_10027991; scaffold77 TRF Tandem_Repeat 686868 686913 56 + . . scaffold77 flankbed promoter 785955 785989 . + . ID=CGI_10027998; scaffold77 TRF Tandem_Repeat 785955 785989 70 + . . scaffold77 flankbed promoter 837760 837793 . - . ID=CGI_10028002; scaffold77 TRF Tandem_Repeat 837760 837793 59 + . . scaffold77 flankbed promoter 920718 920765 . + . ID=CGI_10028008; scaffold77 TRF Tandem_Repeat 920718 920765 96 + . . scaffold77 flankbed promoter 960576 960713 . - . ID=CGI_10028012; scaffold77 WUBlastX DNA_Zator 960576 960713 75 - . . scaffold77 flankbed promoter 960825 961166 . - . ID=CGI_10028012; scaffold77 WUBlastX DNA_Zator 960825 961166 20 - . . scaffold77 flankbed promoter 1033747 1033860 . - . ID=CGI_10028017; scaffold77 WUBlastX LINE_RTE-X 1030591 1033860 926 - . . scaffold77 flankbed promoter 1511630 1511679 . - . ID=CGI_10028041; scaffold77 TRF Tandem_Repeat 1511630 1511679 100 + . . scaffold770 flankbed promoter 136986 137702 . + . ID=CGI_10006269; scaffold770 WUBlastX LINE_CR1 136986 137702 199 + . . scaffold771 flankbed promoter 16984 17128 . + . ID=CGI_10013628; scaffold771 TRF Tandem_Repeat 16984 17863 733 + . . scaffold771 flankbed promoter 16984 17128 . + . ID=CGI_10013628; scaffold771 TRF Tandem_Repeat 16984 17902 822 + . . scaffold771 flankbed promoter 359515 359595 . + . ID=CGI_10013647; scaffold771 TRF Tandem_Repeat 359515 359595 125 + . . scaffold772 flankbed promoter 27686 27748 . + . ID=CGI_10016574; scaffold772 TRF Tandem_Repeat 27686 27748 119 + . . scaffold772 flankbed promoter 85432 85591 . - . ID=CGI_10016578; scaffold772 TRF Tandem_Repeat 85432 85591 166 + . . scaffold772 flankbed promoter 85479 85583 . - . ID=CGI_10016578; scaffold772 TRF Tandem_Repeat 85479 85583 64 + . . scaffold772 flankbed promoter 85432 85621 . - . ID=CGI_10016578; scaffold772 TRF Tandem_Repeat 85432 85621 141 + . . scaffold772 flankbed promoter 93647 93666 . - . ID=CGI_10016579; scaffold772 TRF Tandem_Repeat 93647 93681 52 + . . scaffold772 flankbed promoter 151774 151832 . + . ID=CGI_10016581; scaffold772 TRF Tandem_Repeat 151774 151832 118 + . . scaffold772 flankbed promoter 151830 151868 . + . ID=CGI_10016581; scaffold772 TRF Tandem_Repeat 151830 151868 78 + . . scaffold772 flankbed promoter 160838 161181 . + . ID=CGI_10016582; scaffold772 TRF Tandem_Repeat 159616 161181 2576 + . . scaffold772 flankbed promoter 167187 167760 . + . ID=CGI_10016583; scaffold772 TRF Tandem_Repeat 167187 167760 140 + . . scaffold772 flankbed promoter 167287 167931 . + . ID=CGI_10016583; scaffold772 TRF Tandem_Repeat 167287 167931 556 + . . scaffold772 flankbed promoter 167332 167986 . + . ID=CGI_10016583; scaffold772 TRF Tandem_Repeat 167332 167986 503 + . . scaffold772 flankbed promoter 167287 167909 . + . ID=CGI_10016583; scaffold772 TRF Tandem_Repeat 167287 167909 628 + . . scaffold772 flankbed promoter 172305 172697 . + . ID=CGI_10016584; scaffold772 TRF Tandem_Repeat 172034 172697 147 + . . scaffold772 flankbed promoter 172305 172689 . + . ID=CGI_10016584; scaffold772 TRF Tandem_Repeat 172033 172689 625 + . . scaffold772 flankbed promoter 186970 187078 . - . ID=CGI_10016585; scaffold772 TRF Tandem_Repeat 186970 187078 155 + . . scaffold772 flankbed promoter 261948 262048 . - . ID=CGI_10016587; scaffold772 TRF Tandem_Repeat 261948 262054 142 + . . scaffold772 flankbed promoter 263651 263740 . + . ID=CGI_10016589; scaffold772 TRF Tandem_Repeat 263651 263740 99 + . . scaffold772 flankbed promoter 263706 263796 . + . ID=CGI_10016589; scaffold772 TRF Tandem_Repeat 263706 263796 137 + . . scaffold773 flankbed promoter 19449 19547 . - . ID=CGI_10011341; scaffold773 WUBlastX LTR_Ngaro 19449 19547 34 + . . scaffold773 flankbed promoter 19771 19869 . - . ID=CGI_10011341; scaffold773 WUBlastX LTR_Ngaro 19771 19938 55 + . . scaffold773 flankbed promoter 190166 190295 . + . ID=CGI_10011345; scaffold773 WUBlastX DNA_IS4EU 189864 190295 69 - . . scaffold773 flankbed promoter 268423 268569 . - . ID=CGI_10011348; scaffold773 WUBlastX LTR_Gypsy 268423 268569 22 + . . scaffold773 flankbed promoter 268496 268865 . - . ID=CGI_10011348; scaffold773 WUBlastX LTR_Gypsy 268496 268873 46 + . . scaffold773 flankbed promoter 267961 268344 . - . ID=CGI_10011348; scaffold773 WUBlastX LTR_Gypsy-Cigr 267961 268344 64 + . . scaffold773 flankbed promoter 268553 268865 . - . ID=CGI_10011348; scaffold773 WUBlastX LTR_Gypsy-Cigr 268553 268960 93 + . . scaffold773 flankbed promoter 267925 268437 . - . ID=CGI_10011348; scaffold773 WUBlastX LTR_Gypsy 267925 268437 41 + . . scaffold773 flankbed promoter 268712 268865 . - . ID=CGI_10011348; scaffold773 WUBlastX LTR_Gypsy 268712 268933 100 + . . scaffold773 flankbed promoter 272011 272250 . + . ID=CGI_10011349; scaffold773 WUBlastX LTR_Gypsy-Cigr 272011 272250 120 + . . scaffold773 flankbed promoter 272038 272316 . + . ID=CGI_10011349; scaffold773 WUBlastX LTR_Gypsy 272038 272316 110 + . . scaffold773 flankbed promoter 272008 272388 . + . ID=CGI_10011349; scaffold773 WUBlastX LTR_Gypsy 272008 272388 85 + . . scaffold775 flankbed promoter 116177 116221 . - . ID=CGI_10006091; scaffold775 WUBlastX DNA_Kolobok-Hyd 115529 116221 49 - . . scaffold775 flankbed promoter 116177 116317 . - . ID=CGI_10006091; scaffold775 WUBlastX DNA_Kolobok-Hyd 115961 116317 44 - . . scaffold775 flankbed promoter 131495 131839 . + . ID=CGI_10006095; scaffold775 WUBlastX LINE_L1-Tx1 131495 131854 56 + . . scaffold775 flankbed promoter 131576 131839 . + . ID=CGI_10006095; scaffold775 WUBlastX LINE_L1 131576 131860 70 + . . scaffold775 flankbed promoter 131495 131854 . + . ID=CGI_10006096; scaffold775 WUBlastX LINE_L1-Tx1 131495 131854 56 + . . scaffold775 flankbed promoter 131576 131860 . + . ID=CGI_10006096; scaffold775 WUBlastX LINE_L1 131576 131860 70 + . . scaffold775 flankbed promoter 131627 131854 . + . ID=CGI_10006097; scaffold775 WUBlastX LINE_L1-Tx1 131495 131854 56 + . . scaffold775 flankbed promoter 131627 131860 . + . ID=CGI_10006097; scaffold775 WUBlastX LINE_L1 131576 131860 70 + . . scaffold78 flankbed promoter 26154 26193 . + . ID=CGI_10006913; scaffold78 TRF Tandem_Repeat 26154 26193 80 + . . scaffold780 flankbed promoter 40194 40650 . - . ID=CGI_10024709; scaffold780 TRF Tandem_Repeat 40194 40650 630 + . . scaffold780 flankbed promoter 40194 40653 . - . ID=CGI_10024709; scaffold780 TRF Tandem_Repeat 40194 40653 762 + . . scaffold780 flankbed promoter 41065 41142 . - . ID=CGI_10024709; scaffold780 TRF Tandem_Repeat 41065 41207 132 + . . scaffold780 flankbed promoter 91377 91800 . - . ID=CGI_10024712; scaffold780 TRF Tandem_Repeat 91377 91850 338 + . . scaffold780 flankbed promoter 91377 91800 . - . ID=CGI_10024712; scaffold780 TRF Tandem_Repeat 91377 91822 370 + . . scaffold780 flankbed promoter 106043 106071 . + . ID=CGI_10024716; scaffold780 TRF Tandem_Repeat 106043 106071 58 + . . scaffold780 flankbed promoter 173910 173959 . - . ID=CGI_10024720; scaffold780 TRF Tandem_Repeat 173910 173959 100 + . . scaffold780 flankbed promoter 381920 381983 . - . ID=CGI_10024731; scaffold780 TRF Tandem_Repeat 381920 381983 74 + . . scaffold780 flankbed promoter 381929 381992 . - . ID=CGI_10024731; scaffold780 TRF Tandem_Repeat 381929 381992 65 + . . scaffold780 flankbed promoter 383715 383750 . + . ID=CGI_10024732; scaffold780 TRF Tandem_Repeat 383715 383750 72 + . . scaffold780 flankbed promoter 467080 467112 . - . ID=CGI_10024737; scaffold780 TRF Tandem_Repeat 467080 467112 66 + . . scaffold780 flankbed promoter 742655 742755 . - . ID=CGI_10024746; scaffold780 TRF Tandem_Repeat 742655 742755 166 + . . scaffold780 flankbed promoter 742803 742838 . - . ID=CGI_10024746; scaffold780 TRF Tandem_Repeat 742803 742838 72 + . . scaffold782 flankbed promoter 81676 82044 . - . ID=CGI_10010127; scaffold782 WUBlastX LTR_Gypsy-Cigr 81676 82044 105 - . . scaffold782 flankbed promoter 81676 82044 . + . ID=CGI_10010129; scaffold782 WUBlastX LTR_Gypsy-Cigr 81676 82044 105 - . . scaffold782 flankbed promoter 119148 119397 . - . ID=CGI_10010132; scaffold782 WUBlastX LINE_L1-Tx1 119148 120296 140 + . . scaffold783 flankbed promoter 130632 130848 . + . ID=CGI_10011677; scaffold783 TRF Tandem_Repeat 130632 130848 400 + . . scaffold783 flankbed promoter 130819 130967 . + . ID=CGI_10011677; scaffold783 TRF Tandem_Repeat 130819 130967 223 + . . scaffold783 flankbed promoter 141824 142198 . + . ID=CGI_10011678; scaffold783 WUBlastX LINE_RTE-X 141467 142198 112 + . . scaffold783 flankbed promoter 142120 142302 . + . ID=CGI_10011678; scaffold783 WUBlastX LINE_RTE-X 142120 142302 46 + . . scaffold783 flankbed promoter 141824 142111 . + . ID=CGI_10011678; scaffold783 WUBlastX LINE_RTE-X 141503 142111 186 + . . scaffold783 flankbed promoter 218891 218993 . + . ID=CGI_10011682; scaffold783 TRF Tandem_Repeat 218891 218993 197 + . . scaffold784 flankbed promoter 64701 65123 . + . ID=CGI_10024411; scaffold784 WUBlastX LINE_L1 64701 65123 22 + . . scaffold784 flankbed promoter 309302 309385 . - . ID=CGI_10024422; scaffold784 WUBlastX LTR_Gypsy 309302 309385 31 - . . scaffold784 flankbed promoter 308898 309275 . - . ID=CGI_10024422; scaffold784 WUBlastX LTR_Gypsy 306915 309275 1349 - . . scaffold784 flankbed promoter 308910 309353 . - . ID=CGI_10024422; scaffold784 WUBlastX LTR_Gypsy 308910 309353 170 - . . scaffold784 flankbed promoter 352270 352961 . + . ID=CGI_10024425; scaffold784 TRF Tandem_Repeat 352270 352961 544 + . . scaffold784 flankbed promoter 352270 353036 . + . ID=CGI_10024425; scaffold784 TRF Tandem_Repeat 352270 353036 649 + . . scaffold784 flankbed promoter 352270 353033 . + . ID=CGI_10024425; scaffold784 TRF Tandem_Repeat 352270 353033 643 + . . scaffold784 flankbed promoter 352463 352523 . + . ID=CGI_10024425; scaffold784 TRF Tandem_Repeat 352463 352523 62 + . . scaffold784 flankbed promoter 352463 352536 . + . ID=CGI_10024425; scaffold784 TRF Tandem_Repeat 352463 352536 55 + . . scaffold784 flankbed promoter 352885 352956 . + . ID=CGI_10024425; scaffold784 TRF Tandem_Repeat 352885 352956 56 + . . scaffold784 flankbed promoter 352681 352973 . + . ID=CGI_10024425; scaffold784 TRF Tandem_Repeat 352681 352973 64 + . . scaffold784 flankbed promoter 368825 368866 . + . ID=CGI_10024428; scaffold784 TRF Tandem_Repeat 368825 368866 84 + . . scaffold784 flankbed promoter 624397 624489 . - . ID=CGI_10024436; scaffold784 WUBlastX LINE_CR1-L2 624397 624489 45 - . . scaffold784 flankbed promoter 624400 624507 . - . ID=CGI_10024436; scaffold784 WUBlastX LINE_L2 624400 624507 32 - . . scaffold784 flankbed promoter 624519 624717 . - . ID=CGI_10024436; scaffold784 WUBlastX LINE_L2 624519 624824 90 - . . scaffold784 flankbed promoter 624397 624444 . + . ID=CGI_10024437; scaffold784 WUBlastX LINE_CR1-L2 624397 624489 45 - . . scaffold784 flankbed promoter 624400 624444 . + . ID=CGI_10024437; scaffold784 WUBlastX LINE_L2 624400 624507 32 - . . scaffold784 flankbed promoter 940700 940744 . + . ID=CGI_10024453; scaffold784 TRF Tandem_Repeat 940700 940744 90 + . . scaffold786 flankbed promoter 84518 84822 . + . ID=CGI_10013695; scaffold786 TRF Tandem_Repeat 84518 84822 537 + . . scaffold786 flankbed promoter 130400 130639 . + . ID=CGI_10013699; scaffold786 TRF Tandem_Repeat 130400 130639 403 + . . scaffold786 flankbed promoter 209028 209556 . + . ID=CGI_10013701; scaffold786 TRF Tandem_Repeat 208041 209556 2110 + . . scaffold787 flankbed promoter 10203 10331 . + . ID=CGI_10011643; scaffold787 TRF Tandem_Repeat 10170 10331 204 + . . scaffold787 flankbed promoter 10475 10633 . + . ID=CGI_10011643; scaffold787 TRF Tandem_Repeat 10475 10633 112 + . . scaffold787 flankbed promoter 210823 210864 . + . ID=CGI_10011649; scaffold787 TRF Tandem_Repeat 210823 210864 77 + . . scaffold789 flankbed promoter 133622 133751 . + . ID=CGI_10017186; scaffold789 TRF Tandem_Repeat 133622 133751 161 + . . scaffold789 flankbed promoter 133622 133893 . + . ID=CGI_10017186; scaffold789 TRF Tandem_Repeat 133622 133893 280 + . . scaffold789 flankbed promoter 133769 133891 . + . ID=CGI_10017186; scaffold789 TRF Tandem_Repeat 133769 133891 147 + . . scaffold789 flankbed promoter 184951 185001 . + . ID=CGI_10017191; scaffold789 TRF Tandem_Repeat 184951 185001 102 + . . scaffold789 flankbed promoter 190129 190245 . - . ID=CGI_10017192; scaffold789 TRF Tandem_Repeat 190129 190245 234 + . . scaffold789 flankbed promoter 321709 321798 . + . ID=CGI_10017201; scaffold789 WUBlastX LTR_Gypsy 321709 321798 21 + . . scaffold789 flankbed promoter 362704 362743 . - . ID=CGI_10017204; scaffold789 TRF Tandem_Repeat 362704 362972 301 + . . scaffold79 flankbed promoter 234902 235657 . + . ID=CGI_10024619; scaffold79 TRF Tandem_Repeat 234702 235657 1354 + . . scaffold79 flankbed promoter 257005 257139 . + . ID=CGI_10024620; scaffold79 WUBlastX DNA_Harbinger 257005 257139 21 + . . scaffold79 flankbed promoter 505536 505589 . - . ID=CGI_10024631; scaffold79 TRF Tandem_Repeat 505536 505589 108 + . . scaffold79 flankbed promoter 505536 505589 . + . ID=CGI_10024632; scaffold79 TRF Tandem_Repeat 505536 505589 108 + . . scaffold79 flankbed promoter 571288 571346 . + . ID=CGI_10024637; scaffold79 TRF Tandem_Repeat 571288 571346 118 + . . scaffold79 flankbed promoter 758286 758318 . + . ID=CGI_10024645; scaffold79 TRF Tandem_Repeat 758286 758318 57 + . . scaffold79 flankbed promoter 899448 899516 . + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 899448 899516 52 + . . scaffold79 flankbed promoter 899541 899636 . + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 899541 899636 58 + . . scaffold79 flankbed promoter 899718 900156 . + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 899718 900156 123 + . . scaffold79 flankbed promoter 899781 900340 . + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 899781 900340 285 + . . scaffold79 flankbed promoter 899964 900162 . + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 899964 900162 73 + . . scaffold79 flankbed promoter 900179 900277 . + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 900179 900277 76 + . . scaffold79 flankbed promoter 923402 923429 . - . ID=CGI_10024660; scaffold79 TRF Tandem_Repeat 923402 923429 56 + . . scaffold790 flankbed promoter 157522 157588 . + . ID=CGI_10013169; scaffold790 TRF Tandem_Repeat 157522 157588 125 + . . scaffold790 flankbed promoter 223907 223957 . - . ID=CGI_10013171; scaffold790 WUBlastX DNA_Kolobok-IS4 223907 224467 26 + . . scaffold790 flankbed promoter 223297 223419 . - . ID=CGI_10013171; scaffold790 WUBlastX DNA_IS4EU 223297 223419 45 + . . scaffold790 flankbed promoter 223580 223750 . - . ID=CGI_10013171; scaffold790 WUBlastX DNA_IS4EU 223580 223750 70 + . . scaffold790 flankbed promoter 299449 299650 . - . ID=CGI_10013176; scaffold790 TRF Tandem_Repeat 299449 299650 178 + . . scaffold793 flankbed promoter 23477 23516 . - . ID=CGI_10010889; scaffold793 TRF Tandem_Repeat 23477 23520 88 + . . scaffold793 flankbed promoter 61389 61552 . + . ID=CGI_10010892; scaffold793 TRF Tandem_Repeat 61389 61552 98 + . . scaffold793 flankbed promoter 121773 121805 . + . ID=CGI_10010895; scaffold793 TRF Tandem_Repeat 121773 121805 59 + . . scaffold793 flankbed promoter 242965 243002 . + . ID=CGI_10010901; scaffold793 TRF Tandem_Repeat 242965 243002 76 + . . scaffold794 flankbed promoter 89335 89369 . + . ID=CGI_10017138; scaffold794 TRF Tandem_Repeat 89335 89369 70 + . . scaffold794 flankbed promoter 89446 89475 . + . ID=CGI_10017138; scaffold794 TRF Tandem_Repeat 89446 89475 60 + . . scaffold794 flankbed promoter 130183 130329 . - . ID=CGI_10017141; scaffold794 TRF Tandem_Repeat 130183 130329 73 + . . scaffold794 flankbed promoter 130245 130374 . - . ID=CGI_10017141; scaffold794 TRF Tandem_Repeat 130245 130374 93 + . . scaffold794 flankbed promoter 130231 130329 . + . ID=CGI_10017142; scaffold794 TRF Tandem_Repeat 130183 130329 73 + . . scaffold794 flankbed promoter 130245 130374 . + . ID=CGI_10017142; scaffold794 TRF Tandem_Repeat 130245 130374 93 + . . scaffold794 flankbed promoter 283003 283643 . - . ID=CGI_10017153; scaffold794 TRF Tandem_Repeat 283003 283852 1233 + . . scaffold794 flankbed promoter 285928 286371 . + . ID=CGI_10017154; scaffold794 WUBlastX LINE_L2 285928 286371 83 + . . scaffold794 flankbed promoter 286000 286392 . + . ID=CGI_10017154; scaffold794 WUBlastX LINE_CR1-L2 286000 286392 96 + . . scaffold794 flankbed promoter 328825 329462 . - . ID=CGI_10017156; scaffold794 WUBlastX DNA_En-Spm 328825 330708 1287 - . . scaffold80 flankbed promoter 10771 10839 . + . ID=CGI_10001548; scaffold80 WUBlastX LTR_Gypsy 10771 10839 32 + . . scaffold80 flankbed promoter 10025 10397 . + . ID=CGI_10001548; scaffold80 WUBlastX LTR_Gypsy 9819 10397 74 + . . scaffold80 flankbed promoter 10296 10736 . + . ID=CGI_10001548; scaffold80 WUBlastX LTR_Gypsy 10296 10736 46 + . . scaffold80 flankbed promoter 10025 10112 . + . ID=CGI_10001548; scaffold80 WUBlastX LTR_Gypsy-Cigr 9681 10112 107 + . . scaffold801 flankbed promoter 85642 85729 . - . ID=CGI_10024062; scaffold801 TRF Tandem_Repeat 85642 85729 99 + . . scaffold801 flankbed promoter 80805 80879 . + . ID=CGI_10024063; scaffold801 TRF Tandem_Repeat 80805 80879 150 + . . scaffold801 flankbed promoter 98815 98876 . + . ID=CGI_10024064; scaffold801 TRF Tandem_Repeat 98815 98876 124 + . . scaffold801 flankbed promoter 99583 99619 . + . ID=CGI_10024064; scaffold801 TRF Tandem_Repeat 99583 99619 56 + . . scaffold801 flankbed promoter 110553 110600 . - . ID=CGI_10024065; scaffold801 TRF Tandem_Repeat 110553 110604 104 + . . scaffold801 flankbed promoter 110553 110604 . + . ID=CGI_10024066; scaffold801 TRF Tandem_Repeat 110553 110604 104 + . . scaffold801 flankbed promoter 163595 163800 . + . ID=CGI_10024073; scaffold801 TRF Tandem_Repeat 163595 163800 412 + . . scaffold801 flankbed promoter 232598 232678 . - . ID=CGI_10024079; scaffold801 TRF Tandem_Repeat 232598 232678 117 + . . scaffold801 flankbed promoter 232598 232678 . - . ID=CGI_10024079; scaffold801 TRF Tandem_Repeat 232598 232678 117 + . . scaffold801 flankbed promoter 232598 232678 . - . ID=CGI_10024079; scaffold801 TRF Tandem_Repeat 232598 232678 117 + . . scaffold801 flankbed promoter 333905 333935 . - . ID=CGI_10024085; scaffold801 TRF Tandem_Repeat 333905 333935 62 + . . scaffold801 flankbed promoter 743245 743293 . + . ID=CGI_10024098; scaffold801 TRF Tandem_Repeat 743245 743293 53 + . . scaffold801 flankbed promoter 780200 780266 . + . ID=CGI_10024099; scaffold801 TRF Tandem_Repeat 780200 780266 71 + . . scaffold801 flankbed promoter 780785 780837 . + . ID=CGI_10024099; scaffold801 TRF Tandem_Repeat 780785 780837 97 + . . scaffold802 flankbed promoter 315105 315157 . + . ID=CGI_10015732; scaffold802 TRF Tandem_Repeat 315105 315157 106 + . . scaffold802 flankbed promoter 402371 402396 . + . ID=CGI_10015735; scaffold802 TRF Tandem_Repeat 402371 402396 52 + . . scaffold804 flankbed promoter 170131 170139 . + . ID=CGI_10014858; scaffold804 WUBlastX LTR_Gypsy 169414 170139 90 - . . scaffold804 flankbed promoter 170131 170303 . + . ID=CGI_10014858; scaffold804 WUBlastX LTR_Gypsy-Cigr 170037 170303 68 - . . scaffold804 flankbed promoter 246169 246885 . - . ID=CGI_10014859; scaffold804 WUBlastX LINE_CR1 246169 246885 184 - . . scaffold804 flankbed promoter 278117 278162 . - . ID=CGI_10014862; scaffold804 TRF Tandem_Repeat 278117 278162 92 + . . scaffold806 flankbed promoter 63012 63087 . - . ID=CGI_10004922; scaffold806 TRF Tandem_Repeat 63012 63087 136 + . . scaffold807 flankbed promoter 164171 164512 . + . ID=CGI_10011458; scaffold807 WUBlastX LTR_DIRS 164171 164512 109 + . . scaffold807 flankbed promoter 164720 164807 . + . ID=CGI_10011458; scaffold807 WUBlastX LTR_DIRS 164720 164914 68 + . . scaffold807 flankbed promoter 192338 192390 . + . ID=CGI_10011459; scaffold807 TRF Tandem_Repeat 192338 192390 106 + . . scaffold807 flankbed promoter 205731 205765 . + . ID=CGI_10011460; scaffold807 TRF Tandem_Repeat 205731 205765 70 + . . scaffold807 flankbed promoter 223170 223205 . + . ID=CGI_10011461; scaffold807 TRF Tandem_Repeat 223170 223205 63 + . . scaffold807 flankbed promoter 223170 223212 . + . ID=CGI_10011461; scaffold807 TRF Tandem_Repeat 223170 223212 50 + . . scaffold807 flankbed promoter 274400 274555 . - . ID=CGI_10011465; scaffold807 WUBlastX LINE_RTE-BovB 274400 274555 65 + . . scaffold807 flankbed promoter 274427 274552 . - . ID=CGI_10011465; scaffold807 WUBlastX LINE_RTE-BovB 274427 274552 66 + . . scaffold808 flankbed promoter 529009 529126 . + . ID=CGI_10019037; scaffold808 TRF Tandem_Repeat 529009 529711 955 + . . scaffold808 flankbed promoter 576289 576321 . - . ID=CGI_10019042; scaffold808 TRF Tandem_Repeat 576289 576321 57 + . . scaffold808 flankbed promoter 576347 576384 . - . ID=CGI_10019042; scaffold808 TRF Tandem_Repeat 576347 576384 67 + . . scaffold808 flankbed promoter 576390 576418 . - . ID=CGI_10019042; scaffold808 TRF Tandem_Repeat 576390 576418 58 + . . scaffold810 flankbed promoter 93921 94030 . + . ID=CGI_10005277; scaffold810 TRF Tandem_Repeat 93921 94030 125 + . . scaffold814 flankbed promoter 29209 29247 . + . ID=CGI_10008192; scaffold814 TRF Tandem_Repeat 29209 29247 69 + . . scaffold814 flankbed promoter 122831 122841 . - . ID=CGI_10008198; scaffold814 TRF Tandem_Repeat 122831 122960 98 + . . scaffold816 flankbed promoter 73917 74322 . - . ID=CGI_10015652; scaffold816 TRF Tandem_Repeat 73917 75790 3241 + . . scaffold816 flankbed promoter 105538 106435 . + . ID=CGI_10015653; scaffold816 WUBlastX LTR_Gypsy-Cigr 104990 106435 828 + . . scaffold816 flankbed promoter 175389 175428 . + . ID=CGI_10015654; scaffold816 TRF Tandem_Repeat 175389 175428 71 + . . scaffold816 flankbed promoter 222971 223034 . + . ID=CGI_10015655; scaffold816 TRF Tandem_Repeat 222971 223034 103 + . . scaffold816 flankbed promoter 222971 223031 . + . ID=CGI_10015655; scaffold816 TRF Tandem_Repeat 222971 223031 79 + . . scaffold816 flankbed promoter 276269 276493 . - . ID=CGI_10015656; scaffold816 WUBlastX DNA_TcMar-Pogo 276269 276493 83 - . . scaffold817 flankbed promoter 50183 50365 . - . ID=CGI_10008654; scaffold817 WUBlastX DNA_MuDR 50183 50365 99 - . . scaffold817 flankbed promoter 50321 50365 . - . ID=CGI_10008655; scaffold817 WUBlastX DNA_MuDR 50183 50365 99 - . . scaffold817 flankbed promoter 87319 87357 . + . ID=CGI_10008660; scaffold817 TRF Tandem_Repeat 87319 87357 78 + . . scaffold818 flankbed promoter 66730 66814 . - . ID=CGI_10014508; scaffold818 WUBlastX LTR_Pao 66730 66915 63 - . . scaffold818 flankbed promoter 66757 66814 . - . ID=CGI_10014508; scaffold818 WUBlastX LTR_Pao 66757 66912 90 - . . scaffold818 flankbed promoter 65815 66729 . - . ID=CGI_10014508; scaffold818 WUBlastX LTR_Pao 65353 66729 1303 - . . scaffold818 flankbed promoter 294039 294088 . + . ID=CGI_10014516; scaffold818 TRF Tandem_Repeat 293327 294088 1036 + . . scaffold818 flankbed promoter 294205 294230 . + . ID=CGI_10014516; scaffold818 TRF Tandem_Repeat 294205 294230 52 + . . scaffold818 flankbed promoter 382371 382435 . - . ID=CGI_10014524; scaffold818 TRF Tandem_Repeat 382371 382435 130 + . . scaffold819 flankbed promoter 34005 34049 . + . ID=CGI_10003889; scaffold819 TRF Tandem_Repeat 34005 34049 90 + . . scaffold819 flankbed promoter 34558 34619 . + . ID=CGI_10003889; scaffold819 TRF Tandem_Repeat 34558 34619 79 + . . scaffold82 flankbed promoter 207273 207302 . + . ID=CGI_10025248; scaffold82 TRF Tandem_Repeat 207273 207302 53 + . . scaffold82 flankbed promoter 234112 234153 . + . ID=CGI_10025250; scaffold82 TRF Tandem_Repeat 234112 234153 84 + . . scaffold82 flankbed promoter 305711 306106 . - . ID=CGI_10025254; scaffold82 TRF Tandem_Repeat 305711 306106 441 + . . scaffold82 flankbed promoter 312290 312343 . + . ID=CGI_10025256; scaffold82 TRF Tandem_Repeat 312290 312343 101 + . . scaffold82 flankbed promoter 352616 352652 . + . ID=CGI_10025259; scaffold82 TRF Tandem_Repeat 352616 352652 74 + . . scaffold82 flankbed promoter 417667 417781 . + . ID=CGI_10025263; scaffold82 TRF Tandem_Repeat 417667 417781 131 + . . scaffold82 flankbed promoter 417976 418043 . + . ID=CGI_10025263; scaffold82 TRF Tandem_Repeat 417976 418043 118 + . . scaffold82 flankbed promoter 754638 754766 . - . ID=CGI_10025268; scaffold82 WUBlastX DNA_Kolobok 754638 754766 54 - . . scaffold82 flankbed promoter 754895 755107 . - . ID=CGI_10025268; scaffold82 WUBlastX DNA_Kolobok 754895 755107 47 - . . scaffold82 flankbed promoter 754934 755098 . - . ID=CGI_10025268; scaffold82 WUBlastX DNA_Kolobok 754934 755098 50 - . . scaffold82 flankbed promoter 942874 942928 . + . ID=CGI_10025279; scaffold82 TRF Tandem_Repeat 942874 942928 110 + . . scaffold825 flankbed promoter 37846 37874 . + . ID=CGI_10012700; scaffold825 TRF Tandem_Repeat 37846 37874 58 + . . scaffold825 flankbed promoter 99273 99587 . - . ID=CGI_10012704; scaffold825 WUBlastX LTR_DIRS 99273 99587 116 - . . scaffold825 flankbed promoter 99603 99874 . - . ID=CGI_10012704; scaffold825 WUBlastX LTR_DIRS 99603 101051 780 - . . scaffold825 flankbed promoter 186445 186541 . - . ID=CGI_10012711; scaffold825 TRF Tandem_Repeat 186445 186541 187 + . . scaffold828 flankbed promoter 13899 14065 . + . ID=CGI_10007363; scaffold828 TRF Tandem_Repeat 13856 14065 375 + . . scaffold829 flankbed promoter 82749 82772 . - . ID=CGI_10021139; scaffold829 WUBlastX LINE_L2 82392 82772 49 - . . scaffold829 flankbed promoter 190587 190778 . - . ID=CGI_10021142; scaffold829 WUBlastX DNA_Crypton 190587 191000 84 - . . scaffold829 flankbed promoter 485463 485699 . + . ID=CGI_10021148; scaffold829 WUBlastX LTR_Gypsy 485463 485699 91 + . . scaffold831 flankbed promoter 76597 76984 . - . ID=CGI_10010288; scaffold831 WUBlastX LTR_Ngaro 76597 77064 177 - . . scaffold831 flankbed promoter 76388 76537 . - . ID=CGI_10010288; scaffold831 WUBlastX LTR_Ngaro 76388 76537 71 - . . scaffold831 flankbed promoter 76355 76537 . - . ID=CGI_10010288; scaffold831 WUBlastX LTR_DIRS 76355 76537 52 - . . scaffold831 flankbed promoter 76397 76576 . - . ID=CGI_10010288; scaffold831 WUBlastX LTR_Ngaro 76397 76576 64 - . . scaffold831 flankbed promoter 232922 232982 . - . ID=CGI_10010293; scaffold831 TRF Tandem_Repeat 232922 232982 113 + . . scaffold833 flankbed promoter 240384 240515 . + . ID=CGI_10016737; scaffold833 WUBlastX LINE_RTE-BovB 240384 240656 89 + . . scaffold833 flankbed promoter 239516 240089 . + . ID=CGI_10016737; scaffold833 WUBlastX LINE_RTE-X 239511 240089 144 - . . scaffold833 flankbed promoter 240354 240515 . + . ID=CGI_10016737; scaffold833 WUBlastX LINE_RTE-BovB 240354 240758 78 + . . scaffold833 flankbed promoter 240088 240384 . + . ID=CGI_10016737; scaffold833 WUBlastX LINE_RTE-X 240088 240384 79 - . . scaffold833 flankbed promoter 240375 240515 . + . ID=CGI_10016737; scaffold833 WUBlastX LINE_RTE-BovB 240375 240827 61 + . . scaffold833 flankbed promoter 240088 240279 . + . ID=CGI_10016737; scaffold833 WUBlastX LINE_RTE-X 240088 240279 122 - . . scaffold833 flankbed promoter 240384 240656 . + . ID=CGI_10016738; scaffold833 WUBlastX LINE_RTE-BovB 240384 240656 89 + . . scaffold833 flankbed promoter 239894 240089 . + . ID=CGI_10016738; scaffold833 WUBlastX LINE_RTE-X 239511 240089 144 - . . scaffold833 flankbed promoter 240354 240758 . + . ID=CGI_10016738; scaffold833 WUBlastX LINE_RTE-BovB 240354 240758 78 + . . scaffold833 flankbed promoter 240088 240384 . + . ID=CGI_10016738; scaffold833 WUBlastX LINE_RTE-X 240088 240384 79 - . . scaffold833 flankbed promoter 240375 240827 . + . ID=CGI_10016738; scaffold833 WUBlastX LINE_RTE-BovB 240375 240827 61 + . . scaffold833 flankbed promoter 240088 240279 . + . ID=CGI_10016738; scaffold833 WUBlastX LINE_RTE-X 240088 240279 122 - . . scaffold833 flankbed promoter 303374 303403 . + . ID=CGI_10016743; scaffold833 TRF Tandem_Repeat 303374 303403 53 + . . scaffold833 flankbed promoter 303683 303718 . + . ID=CGI_10016743; scaffold833 TRF Tandem_Repeat 303683 303718 65 + . . scaffold833 flankbed promoter 469910 470116 . - . ID=CGI_10016746; scaffold833 WUBlastX DNA_Academ 469910 470116 92 - . . scaffold833 flankbed promoter 469469 469910 . - . ID=CGI_10016746; scaffold833 WUBlastX DNA_Academ 469368 469910 174 - . . scaffold834 flankbed promoter 69975 70022 . + . ID=CGI_10004322; scaffold834 TRF Tandem_Repeat 69975 70022 96 + . . scaffold835 flankbed promoter 303540 303549 . - . ID=CGI_10016119; scaffold835 TRF Tandem_Repeat 303540 303630 130 + . . scaffold835 flankbed promoter 303719 303766 . + . ID=CGI_10016120; scaffold835 TRF Tandem_Repeat 303719 303766 87 + . . scaffold837 flankbed promoter 8570 8848 . + . ID=CGI_10006865; scaffold837 WUBlastX LTR_Gypsy 8570 8848 54 + . . scaffold837 flankbed promoter 7953 8774 . + . ID=CGI_10006865; scaffold837 WUBlastX LTR_Gypsy 7953 8774 216 + . . scaffold837 flankbed promoter 7956 8450 . + . ID=CGI_10006865; scaffold837 WUBlastX LTR_Gypsy 7956 8450 452 + . . scaffold837 flankbed promoter 7956 8546 . + . ID=CGI_10006865; scaffold837 WUBlastX LTR_Gypsy-Cigr 7956 8546 412 + . . scaffold837 flankbed promoter 7953 8645 . + . ID=CGI_10006865; scaffold837 WUBlastX LTR_Gypsy 7905 8645 341 + . . scaffold837 flankbed promoter 32953 33413 . + . ID=CGI_10006867; scaffold837 TRF Tandem_Repeat 32953 33413 613 + . . scaffold837 flankbed promoter 99744 99820 . + . ID=CGI_10006871; scaffold837 TRF Tandem_Repeat 99706 99820 149 + . . scaffold837 flankbed promoter 99885 100058 . + . ID=CGI_10006871; scaffold837 TRF Tandem_Repeat 99885 100058 114 + . . scaffold837 flankbed promoter 99894 100079 . + . ID=CGI_10006871; scaffold837 TRF Tandem_Repeat 99894 100079 327 + . . scaffold839 flankbed promoter 88347 88937 . - . ID=CGI_10004337; scaffold839 WUBlastX LINE_CR1 88347 88958 79 - . . scaffold847 flankbed promoter 341794 341859 . + . ID=CGI_10022273; scaffold847 TRF Tandem_Repeat 341794 341859 132 + . . scaffold847 flankbed promoter 511809 512111 . + . ID=CGI_10022281; scaffold847 WUBlastX LTR_DIRS 511809 512111 79 - . . scaffold847 flankbed promoter 511905 512156 . + . ID=CGI_10022281; scaffold847 WUBlastX LTR_DIRS 511905 512156 61 - . . scaffold847 flankbed promoter 511783 511894 . + . ID=CGI_10022281; scaffold847 WUBlastX LTR_DIRS 511358 511894 163 - . . scaffold847 flankbed promoter 708748 709101 . - . ID=CGI_10022288; scaffold847 WUBlastX LINE_RTE-X 708748 709101 63 - . . scaffold847 flankbed promoter 708601 709080 . - . ID=CGI_10022288; scaffold847 WUBlastX LINE_RTE-X 708601 709080 47 - . . scaffold847 flankbed promoter 708700 709200 . - . ID=CGI_10022288; scaffold847 WUBlastX LINE_RTE-X 708700 709200 62 - . . scaffold847 flankbed promoter 716543 716603 . + . ID=CGI_10022290; scaffold847 TRF Tandem_Repeat 716543 716603 61 + . . scaffold849 flankbed promoter 9397 9585 . + . ID=CGI_10000827; scaffold849 WUBlastX LINE_Penelope 9397 9585 32 + . . scaffold85 flankbed promoter 601958 602322 . - . ID=CGI_10020717; scaffold85 WUBlastX LTR_Gypsy 601958 603694 1145 + . . scaffold85 flankbed promoter 602222 602322 . - . ID=CGI_10020717; scaffold85 WUBlastX LTR_Gypsy 602222 605056 2011 + . . scaffold85 flankbed promoter 604361 605302 . + . ID=CGI_10020718; scaffold85 WUBlastX LTR_Gypsy 603725 605302 405 + . . scaffold85 flankbed promoter 604361 605056 . + . ID=CGI_10020718; scaffold85 WUBlastX LTR_Gypsy 602222 605056 2011 + . . scaffold85 flankbed promoter 637883 637912 . + . ID=CGI_10020720; scaffold85 TRF Tandem_Repeat 637883 637912 60 + . . scaffold850 flankbed promoter 127103 127292 . - . ID=CGI_10011238; scaffold850 TRF Tandem_Repeat 127103 127292 96 + . . scaffold850 flankbed promoter 127115 127252 . - . ID=CGI_10011238; scaffold850 TRF Tandem_Repeat 127115 127252 112 + . . scaffold850 flankbed promoter 127262 127294 . - . ID=CGI_10011238; scaffold850 TRF Tandem_Repeat 127262 127294 66 + . . scaffold850 flankbed promoter 171714 172012 . + . ID=CGI_10011242; scaffold850 TRF Tandem_Repeat 171714 172012 589 + . . scaffold852 flankbed promoter 66717 67525 . - . ID=CGI_10012035; scaffold852 WUBlastX LTR_Gypsy-Cigr 66717 69767 2144 - . . scaffold852 flankbed promoter 66714 67525 . - . ID=CGI_10012035; scaffold852 WUBlastX LTR_Gypsy 66714 70346 1793 - . . scaffold852 flankbed promoter 66624 67109 . - . ID=CGI_10012035; scaffold852 WUBlastX LTR_Gypsy 66624 67109 27 - . . scaffold852 flankbed promoter 120838 120863 . + . ID=CGI_10012039; scaffold852 TRF Tandem_Repeat 120838 120863 52 + . . scaffold852 flankbed promoter 185573 185575 . + . ID=CGI_10012041; scaffold852 WUBlastX LINE_L1-Tx1 185465 185575 51 - . . scaffold852 flankbed promoter 185573 185596 . + . ID=CGI_10012041; scaffold852 WUBlastX LINE_L1 185465 185596 24 - . . scaffold853 flankbed promoter 56968 56997 . + . ID=CGI_10017481; scaffold853 TRF Tandem_Repeat 56968 56997 51 + . . scaffold853 flankbed promoter 200270 200374 . - . ID=CGI_10017493; scaffold853 TRF Tandem_Repeat 200270 200374 56 + . . scaffold853 flankbed promoter 406179 406270 . + . ID=CGI_10017512; scaffold853 TRF Tandem_Repeat 406179 406270 111 + . . scaffold853 flankbed promoter 406197 406270 . + . ID=CGI_10017512; scaffold853 TRF Tandem_Repeat 406197 406270 105 + . . scaffold853 flankbed promoter 437134 437320 . - . ID=CGI_10017516; scaffold853 WUBlastX LINE_L2 437134 438576 387 - . . scaffold853 flankbed promoter 437101 437320 . - . ID=CGI_10017516; scaffold853 WUBlastX LINE_L2 437101 438114 417 - . . scaffold853 flankbed promoter 475103 475372 . - . ID=CGI_10017519; scaffold853 WUBlastX LTR_Ngaro 475091 475372 48 - . . scaffold854 flankbed promoter 588681 588715 . - . ID=CGI_10022260; scaffold854 TRF Tandem_Repeat 588681 588715 70 + . . scaffold854 flankbed promoter 614170 614766 . + . ID=CGI_10022262; scaffold854 WUBlastX LINE_CR1 614170 614766 245 + . . scaffold854 flankbed promoter 614278 615006 . + . ID=CGI_10022262; scaffold854 WUBlastX LINE_L1-Tx1 614278 615261 46 + . . scaffold854 flankbed promoter 614170 614877 . + . ID=CGI_10022262; scaffold854 WUBlastX LINE_L1-Tx1 614170 614877 201 + . . scaffold855 flankbed promoter 13326 13670 . - . ID=CGI_10001161; scaffold855 WUBlastX LTR_Pao 13326 13670 93 - . . scaffold855 flankbed promoter 13262 13688 . - . ID=CGI_10001161; scaffold855 WUBlastX LTR_Pao 13200 13688 44 - . . scaffold858 flankbed promoter 95120 95169 . - . ID=CGI_10004937; scaffold858 TRF Tandem_Repeat 95120 95169 100 + . . scaffold86 flankbed promoter 120934 121213 . - . ID=CGI_10028136; scaffold86 WUBlastX LINE_RTE-X 120934 121296 208 - . . scaffold86 flankbed promoter 245487 245531 . - . ID=CGI_10028144; scaffold86 TRF Tandem_Repeat 245487 245531 90 + . . scaffold86 flankbed promoter 361977 362003 . + . ID=CGI_10028149; scaffold86 TRF Tandem_Repeat 361977 362003 54 + . . scaffold86 flankbed promoter 398165 398521 . + . ID=CGI_10028152; scaffold86 WUBlastX DNA_Academ 398165 398896 95 + . . scaffold86 flankbed promoter 417001 417108 . - . ID=CGI_10028153; scaffold86 TRF Tandem_Repeat 417001 417108 189 + . . scaffold86 flankbed promoter 523534 524049 . - . ID=CGI_10028156; scaffold86 WUBlastX DNA_Chapaev-Cha 523534 524256 42 + . . scaffold86 flankbed promoter 523495 523737 . - . ID=CGI_10028156; scaffold86 WUBlastX DNA_Chapaev 523495 523737 44 + . . scaffold86 flankbed promoter 577000 577053 . + . ID=CGI_10028160; scaffold86 WUBlastX DNA_Sola 577000 577470 29 + . . scaffold86 flankbed promoter 760998 761167 . - . ID=CGI_10028171; scaffold86 TRF Tandem_Repeat 760998 761167 227 + . . scaffold86 flankbed promoter 760998 761167 . - . ID=CGI_10028172; scaffold86 TRF Tandem_Repeat 760998 761167 227 + . . scaffold86 flankbed promoter 796843 797272 . - . ID=CGI_10028174; scaffold86 TRF Tandem_Repeat 796843 797272 745 + . . scaffold86 flankbed promoter 806682 807479 . - . ID=CGI_10028176; scaffold86 WUBlastX LTR_Gypsy 806043 807479 1039 - . . scaffold86 flankbed promoter 944476 944662 . - . ID=CGI_10028181; scaffold86 TRF Tandem_Repeat 944476 944957 528 + . . scaffold86 flankbed promoter 1144870 1144933 . + . ID=CGI_10028191; scaffold86 TRF Tandem_Repeat 1144870 1144933 74 + . . scaffold86 flankbed promoter 1144870 1144933 . + . ID=CGI_10028191; scaffold86 TRF Tandem_Repeat 1144870 1144933 85 + . . scaffold86 flankbed promoter 1173519 1173704 . + . ID=CGI_10028192; scaffold86 TRF Tandem_Repeat 1173519 1173704 173 + . . scaffold86 flankbed promoter 1227477 1227501 . - . ID=CGI_10028195; scaffold86 TRF Tandem_Repeat 1227477 1227519 77 + . . scaffold86 flankbed promoter 1227477 1227519 . + . ID=CGI_10028196; scaffold86 TRF Tandem_Repeat 1227477 1227519 77 + . . scaffold86 flankbed promoter 1456611 1456754 . + . ID=CGI_10028212; scaffold86 WUBlastX DNA_Maverick 1456611 1456754 20 + . . scaffold86 flankbed promoter 1456761 1456994 . + . ID=CGI_10028212; scaffold86 WUBlastX DNA_Maverick 1456761 1456994 66 + . . scaffold86 flankbed promoter 1456457 1456555 . + . ID=CGI_10028212; scaffold86 WUBlastX DNA_Maverick 1456457 1456555 49 + . . scaffold86 flankbed promoter 1456332 1456463 . + . ID=CGI_10028212; scaffold86 WUBlastX DNA_Maverick 1456332 1456463 112 + . . scaffold86 flankbed promoter 1456069 1456317 . + . ID=CGI_10028212; scaffold86 WUBlastX DNA_Maverick 1455442 1456317 383 + . . scaffold86 flankbed promoter 1530784 1531667 . - . ID=CGI_10028218; scaffold86 WUBlastX LTR_Ngaro 1530784 1531752 374 - . . scaffold86 flankbed promoter 1560613 1560618 . + . ID=CGI_10028220; scaffold86 TRF Tandem_Repeat 1560563 1560618 62 + . . scaffold86 flankbed promoter 1560613 1560618 . + . ID=CGI_10028220; scaffold86 TRF Tandem_Repeat 1560563 1560618 62 + . . scaffold864 flankbed promoter 3140 3544 . + . ID=CGI_10000787; scaffold864 WUBlastX DNA_TcMar-Tc1 3140 3544 121 - . . scaffold864 flankbed promoter 2813 2823 . + . ID=CGI_10000787; scaffold864 WUBlastX DNA_TcMar-Tc1 2563 2823 116 - . . scaffold864 flankbed promoter 2813 3161 . + . ID=CGI_10000787; scaffold864 WUBlastX DNA_TcMar-Tc1 2784 3161 105 - . . scaffold866 flankbed promoter 42925 42980 . + . ID=CGI_10004741; scaffold866 TRF Tandem_Repeat 42925 42980 60 + . . scaffold866 flankbed promoter 42925 42980 . + . ID=CGI_10004741; scaffold866 TRF Tandem_Repeat 42925 42980 78 + . . scaffold866 flankbed promoter 52587 52622 . + . ID=CGI_10004743; scaffold866 TRF Tandem_Repeat 52587 52622 54 + . . scaffold866 flankbed promoter 52624 52715 . + . ID=CGI_10004743; scaffold866 TRF Tandem_Repeat 52624 52715 157 + . . scaffold866 flankbed promoter 52412 52564 . + . ID=CGI_10004743; scaffold866 WUBlastX LINE_RTE-BovB 52412 52564 29 - . . scaffold866 flankbed promoter 52294 52404 . + . ID=CGI_10004743; scaffold866 WUBlastX LINE_RTE-BovB 52294 52404 43 - . . scaffold866 flankbed promoter 52409 52540 . + . ID=CGI_10004743; scaffold866 WUBlastX LINE_RTE-BovB 52409 52540 56 - . . scaffold866 flankbed promoter 54357 54409 . + . ID=CGI_10004744; scaffold866 TRF Tandem_Repeat 54357 54409 106 + . . scaffold866 flankbed promoter 70541 70570 . - . ID=CGI_10004745; scaffold866 TRF Tandem_Repeat 70541 70607 62 + . . scaffold866 flankbed promoter 60620 60669 . + . ID=CGI_10004746; scaffold866 TRF Tandem_Repeat 60620 60669 100 + . . scaffold867 flankbed promoter 271809 271962 . + . ID=CGI_10026216; scaffold867 TRF Tandem_Repeat 271809 271962 175 + . . scaffold867 flankbed promoter 289950 289994 . + . ID=CGI_10026218; scaffold867 TRF Tandem_Repeat 289950 289994 90 + . . scaffold867 flankbed promoter 325466 326301 . + . ID=CGI_10026222; scaffold867 TRF Tandem_Repeat 325466 326301 1057 + . . scaffold867 flankbed promoter 325466 326301 . + . ID=CGI_10026222; scaffold867 TRF Tandem_Repeat 325466 326301 1057 + . . scaffold867 flankbed promoter 501355 501408 . - . ID=CGI_10026232; scaffold867 TRF Tandem_Repeat 501355 501408 90 + . . scaffold867 flankbed promoter 623327 623437 . + . ID=CGI_10026235; scaffold867 WUBlastX LTR_Gypsy 623066 623437 66 + . . scaffold867 flankbed promoter 623327 623368 . + . ID=CGI_10026235; scaffold867 WUBlastX LTR_Gypsy 622958 623368 90 + . . scaffold867 flankbed promoter 694584 694630 . - . ID=CGI_10026237; scaffold867 TRF Tandem_Repeat 694584 694630 94 + . . scaffold867 flankbed promoter 884682 884837 . - . ID=CGI_10026241; scaffold867 WUBlastX LTR_Gypsy 884682 884837 32 + . . scaffold867 flankbed promoter 1039474 1039734 . - . ID=CGI_10026257; scaffold867 TRF Tandem_Repeat 1039474 1041526 2245 + . . scaffold867 flankbed promoter 1036968 1036994 . + . ID=CGI_10026258; scaffold867 TRF Tandem_Repeat 1036968 1036994 54 + . . scaffold867 flankbed promoter 1136975 1137004 . - . ID=CGI_10026263; scaffold867 TRF Tandem_Repeat 1136975 1137004 51 + . . scaffold868 flankbed promoter 51340 51382 . - . ID=CGI_10006356; scaffold868 TRF Tandem_Repeat 51340 51382 86 + . . scaffold87 flankbed promoter 104045 104471 . + . ID=CGI_10006309; scaffold87 WUBlastX LINE_L2 103977 104471 55 - . . scaffold87 flankbed promoter 104045 104390 . + . ID=CGI_10006309; scaffold87 WUBlastX LINE_L2 104040 104390 85 - . . scaffold873 flankbed promoter 120948 121034 . - . ID=CGI_10014418; scaffold873 TRF Tandem_Repeat 120948 121034 79 + . . scaffold873 flankbed promoter 121064 121222 . - . ID=CGI_10014418; scaffold873 TRF Tandem_Repeat 121064 121222 135 + . . scaffold873 flankbed promoter 121222 121280 . - . ID=CGI_10014418; scaffold873 TRF Tandem_Repeat 121222 121387 167 + . . scaffold873 flankbed promoter 132906 133016 . + . ID=CGI_10014419; scaffold873 TRF Tandem_Repeat 132906 133016 150 + . . scaffold873 flankbed promoter 132906 133076 . + . ID=CGI_10014419; scaffold873 TRF Tandem_Repeat 132906 133076 139 + . . scaffold873 flankbed promoter 223924 224325 . + . ID=CGI_10014423; scaffold873 WUBlastX DNA_Harbinger 223924 224325 165 - . . scaffold873 flankbed promoter 370094 370256 . + . ID=CGI_10014438; scaffold873 WUBlastX LINE_Proto2 370094 370381 77 - . . scaffold873 flankbed promoter 369257 369414 . + . ID=CGI_10014438; scaffold873 WUBlastX LINE_RTE-X 368959 369414 49 - . . scaffold873 flankbed promoter 369257 369507 . + . ID=CGI_10014438; scaffold873 WUBlastX LINE_I-Nimb 369037 369507 21 - . . scaffold874 flankbed promoter 23635 23694 . + . ID=CGI_10001710; scaffold874 TRF Tandem_Repeat 23635 23694 66 + . . scaffold874 flankbed promoter 24278 24310 . + . ID=CGI_10001710; scaffold874 TRF Tandem_Repeat 24278 24310 50 + . . scaffold880 flankbed promoter 96091 96140 . + . ID=CGI_10022182; scaffold880 TRF Tandem_Repeat 96091 96140 66 + . . scaffold880 flankbed promoter 250894 251131 . - . ID=CGI_10022185; scaffold880 WUBlastX LINE_RTE-X 250894 252309 659 + . . scaffold880 flankbed promoter 326155 326221 . - . ID=CGI_10022191; scaffold880 TRF Tandem_Repeat 326155 326221 55 + . . scaffold880 flankbed promoter 402321 402512 . + . ID=CGI_10022194; scaffold880 WUBlastX DNA_Kolobok 402321 402512 104 - . . scaffold880 flankbed promoter 402316 402530 . + . ID=CGI_10022194; scaffold880 WUBlastX DNA_Kolobok 402225 402530 68 - . . scaffold880 flankbed promoter 522904 522942 . - . ID=CGI_10022198; scaffold880 TRF Tandem_Repeat 522904 522942 53 + . . scaffold880 flankbed promoter 522396 522572 . - . ID=CGI_10022198; scaffold880 WUBlastX DNA_Harbinger 522396 522572 29 - . . scaffold880 flankbed promoter 522904 522942 . + . ID=CGI_10022199; scaffold880 TRF Tandem_Repeat 522904 522942 53 + . . scaffold880 flankbed promoter 522396 522572 . + . ID=CGI_10022199; scaffold880 WUBlastX DNA_Harbinger 522396 522572 29 - . . scaffold880 flankbed promoter 617864 617929 . - . ID=CGI_10022202; scaffold880 TRF Tandem_Repeat 617864 617929 114 + . . scaffold880 flankbed promoter 617128 617385 . - . ID=CGI_10022202; scaffold880 WUBlastX DNA_Kolobok-Hyd 617128 617385 37 - . . scaffold880 flankbed promoter 617014 617352 . - . ID=CGI_10022202; scaffold880 WUBlastX DNA_Kolobok-Hyd 617014 617352 23 - . . scaffold880 flankbed promoter 687339 687654 . - . ID=CGI_10022204; scaffold880 WUBlastX LINE_RTE-X 687339 687758 21 - . . scaffold880 flankbed promoter 687396 687654 . - . ID=CGI_10022204; scaffold880 WUBlastX LINE_RTE-X 687396 687680 52 - . . scaffold880 flankbed promoter 687336 687654 . - . ID=CGI_10022204; scaffold880 WUBlastX LINE_RTE-X 687336 687680 24 - . . scaffold885 flankbed promoter 12883 12933 . + . ID=CGI_10025186; scaffold885 WUBlastX DNA_Kolobok 12883 13128 105 + . . scaffold885 flankbed promoter 12557 12691 . + . ID=CGI_10025186; scaffold885 WUBlastX DNA_Kolobok 12557 12691 23 + . . scaffold885 flankbed promoter 12602 12733 . + . ID=CGI_10025186; scaffold885 WUBlastX DNA_Kolobok 12602 12733 24 + . . scaffold885 flankbed promoter 46595 46837 . + . ID=CGI_10025188; scaffold885 WUBlastX LINE_RTE-X 46595 46837 44 - . . scaffold885 flankbed promoter 46637 46813 . + . ID=CGI_10025188; scaffold885 WUBlastX LINE_RTE-X 46637 46813 69 - . . scaffold885 flankbed promoter 158562 158599 . - . ID=CGI_10025195; scaffold885 TRF Tandem_Repeat 158562 158599 76 + . . scaffold885 flankbed promoter 402352 402402 . + . ID=CGI_10025203; scaffold885 TRF Tandem_Repeat 402352 402402 102 + . . scaffold885 flankbed promoter 461841 461892 . + . ID=CGI_10025207; scaffold885 TRF Tandem_Repeat 461829 461892 128 + . . scaffold885 flankbed promoter 529111 529148 . + . ID=CGI_10025213; scaffold885 TRF Tandem_Repeat 529111 529148 76 + . . scaffold885 flankbed promoter 855369 855470 . + . ID=CGI_10025226; scaffold885 TRF Tandem_Repeat 855369 855470 163 + . . scaffold885 flankbed promoter 854481 854512 . + . ID=CGI_10025226; scaffold885 WUBlastX LINE_RTE-X 854198 854512 72 + . . scaffold885 flankbed promoter 854481 854623 . + . ID=CGI_10025226; scaffold885 WUBlastX LINE_RTE-X 854192 854623 55 + . . scaffold888 flankbed promoter 8641 9408 . - . ID=CGI_10013435; scaffold888 WUBlastX LINE_L1-Tx1 8641 9408 109 + . . scaffold888 flankbed promoter 97718 97768 . - . ID=CGI_10013445; scaffold888 TRF Tandem_Repeat 97718 97768 102 + . . scaffold888 flankbed promoter 97914 98177 . - . ID=CGI_10013445; scaffold888 WUBlastX LINE_L2 97914 98315 59 - . . scaffold888 flankbed promoter 212774 212828 . - . ID=CGI_10013453; scaffold888 TRF Tandem_Repeat 212774 212828 103 + . . scaffold890 flankbed promoter 83536 83868 . + . ID=CGI_10014465; scaffold890 WUBlastX DNA_TcMar-Tc1 83401 83868 70 - . . scaffold890 flankbed promoter 83536 84264 . + . ID=CGI_10014465; scaffold890 WUBlastX DNA_TcMar-Tc1 83473 84264 369 - . . scaffold890 flankbed promoter 83536 84408 . + . ID=CGI_10014465; scaffold890 WUBlastX DNA_TcMar-Tc1 83473 84408 115 - . . scaffold890 flankbed promoter 154419 154451 . - . ID=CGI_10014469; scaffold890 TRF Tandem_Repeat 154419 154451 66 + . . scaffold890 flankbed promoter 224285 224309 . + . ID=CGI_10014473; scaffold890 TRF Tandem_Repeat 224285 224309 50 + . . scaffold890 flankbed promoter 265229 265254 . - . ID=CGI_10014477; scaffold890 TRF Tandem_Repeat 265229 265254 52 + . . scaffold890 flankbed promoter 265266 265319 . - . ID=CGI_10014477; scaffold890 WUBlastX LINE_CR1-L2 265266 265370 27 + . . scaffold893 flankbed promoter 6019 6661 . + . ID=CGI_10005783; scaffold893 TRF Tandem_Repeat 5177 6661 2828 + . . scaffold893 flankbed promoter 49798 49905 . - . ID=CGI_10005784; scaffold893 TRF Tandem_Repeat 49798 49905 87 + . . scaffold894 flankbed promoter 10654 10713 . + . ID=CGI_10008537; scaffold894 TRF Tandem_Repeat 10654 10713 111 + . . scaffold894 flankbed promoter 63381 63420 . - . ID=CGI_10008539; scaffold894 TRF Tandem_Repeat 63381 63420 80 + . . scaffold894 flankbed promoter 111211 111269 . - . ID=CGI_10008543; scaffold894 TRF Tandem_Repeat 111211 111269 118 + . . scaffold894 flankbed promoter 157769 157816 . - . ID=CGI_10008547; scaffold894 TRF Tandem_Repeat 157769 157816 71 + . . scaffold895 flankbed promoter 218222 218258 . + . ID=CGI_10011337; scaffold895 TRF Tandem_Repeat 218222 218258 74 + . . scaffold896 flankbed promoter 23509 23715 . - . ID=CGI_10022829; scaffold896 WUBlastX LTR_Ngaro 23509 23715 37 - . . scaffold896 flankbed promoter 23554 23715 . - . ID=CGI_10022829; scaffold896 WUBlastX LTR_Ngaro 23554 23715 42 - . . scaffold896 flankbed promoter 23744 23917 . - . ID=CGI_10022829; scaffold896 WUBlastX LTR_Ngaro 23744 23917 65 - . . scaffold896 flankbed promoter 472078 472151 . - . ID=CGI_10022852; scaffold896 TRF Tandem_Repeat 472078 472151 62 + . . scaffold896 flankbed promoter 574545 574585 . + . ID=CGI_10022860; scaffold896 TRF Tandem_Repeat 574545 574585 82 + . . scaffold896 flankbed promoter 574906 574949 . + . ID=CGI_10022860; scaffold896 TRF Tandem_Repeat 574906 574949 88 + . . scaffold896 flankbed promoter 609745 609883 . + . ID=CGI_10022866; scaffold896 TRF Tandem_Repeat 609745 609883 109 + . . scaffold896 flankbed promoter 665800 665871 . - . ID=CGI_10022870; scaffold896 TRF Tandem_Repeat 665800 665871 128 + . . scaffold896 flankbed promoter 759310 759476 . + . ID=CGI_10022872; scaffold896 WUBlastX LTR_Gypsy 759036 759476 22 + . . scaffold896 flankbed promoter 759310 759377 . + . ID=CGI_10022872; scaffold896 WUBlastX LTR_Gypsy-Cigr 757458 759377 729 + . . scaffold896 flankbed promoter 798901 799044 . - . ID=CGI_10022874; scaffold896 TRF Tandem_Repeat 798901 799044 135 + . . scaffold9 flankbed promoter 94480 95409 . + . ID=CGI_10006688; scaffold9 WUBlastX LINE_CR1 94480 95451 237 + . . scaffold90 flankbed promoter 134099 134803 . + . ID=CGI_10015160; scaffold90 WUBlastX LTR_Gypsy 134015 134803 482 + . . scaffold90 flankbed promoter 135588 135729 . + . ID=CGI_10015161; scaffold90 WUBlastX LTR_Gypsy 135588 135776 20 + . . scaffold90 flankbed promoter 134730 134803 . + . ID=CGI_10015161; scaffold90 WUBlastX LTR_Gypsy 134015 134803 482 + . . scaffold90 flankbed promoter 153714 153782 . - . ID=CGI_10015162; scaffold90 WUBlastX LTR_Gypsy 153714 153866 24 - . . scaffold90 flankbed promoter 153738 153782 . - . ID=CGI_10015162; scaffold90 WUBlastX LTR_Gypsy 153738 154094 70 - . . scaffold90 flankbed promoter 203293 203672 . - . ID=CGI_10015167; scaffold90 WUBlastX LTR_Gypsy 203293 203775 274 - . . scaffold90 flankbed promoter 203176 203672 . - . ID=CGI_10015167; scaffold90 WUBlastX LTR_Gypsy 203176 203772 128 - . . scaffold90 flankbed promoter 203002 203672 . - . ID=CGI_10015167; scaffold90 WUBlastX LTR_Gypsy 203002 203775 116 - . . scaffold90 flankbed promoter 202780 203016 . - . ID=CGI_10015167; scaffold90 WUBlastX DNA_NOF 202780 203016 45 - . . scaffold90 flankbed promoter 202673 202950 . - . ID=CGI_10015167; scaffold90 WUBlastX LTR_Pao 202672 202950 51 - . . scaffold90 flankbed promoter 400221 400283 . - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Charlie 400221 400283 31 - . . scaffold907 flankbed promoter 11841 12215 . + . ID=CGI_10003557; scaffold907 WUBlastX LTR_Pao 11841 12215 65 + . . scaffold907 flankbed promoter 11847 12314 . + . ID=CGI_10003557; scaffold907 WUBlastX LTR_Pao 11847 12314 33 + . . scaffold908 flankbed promoter 69770 70295 . - . ID=CGI_10013128; scaffold908 TRF Tandem_Repeat 69770 70295 241 + . . scaffold908 flankbed promoter 106401 106580 . + . ID=CGI_10013131; scaffold908 TRF Tandem_Repeat 106401 106580 156 + . . scaffold908 flankbed promoter 220250 220363 . + . ID=CGI_10013136; scaffold908 WUBlastX LINE_RTE-BovB 220250 220363 64 + . . scaffold908 flankbed promoter 220365 220454 . + . ID=CGI_10013136; scaffold908 WUBlastX LINE_RTE-BovB 220365 220454 38 + . . scaffold908 flankbed promoter 220468 220554 . + . ID=CGI_10013136; scaffold908 WUBlastX LINE_RTE-BovB 220468 220554 21 + . . scaffold91 flankbed promoter 47016 47171 . - . ID=CGI_10004048; scaffold91 WUBlastX LTR_Copia 47016 47171 25 - . . scaffold91 flankbed promoter 47082 47877 . - . ID=CGI_10004048; scaffold91 WUBlastX LTR_Gypsy-Cigr 47082 51038 1515 - . . scaffold911 flankbed promoter 133893 134078 . + . ID=CGI_10012139; scaffold911 WUBlastX DNA_TcMar-Tc1 133893 134078 30 + . . scaffold914 flankbed promoter 68147 68234 . - . ID=CGI_10018868; scaffold914 TRF Tandem_Repeat 68147 68234 72 + . . scaffold914 flankbed promoter 68154 68226 . - . ID=CGI_10018868; scaffold914 TRF Tandem_Repeat 68154 68226 103 + . . scaffold914 flankbed promoter 121187 121329 . + . ID=CGI_10018872; scaffold914 TRF Tandem_Repeat 121187 121329 205 + . . scaffold914 flankbed promoter 192490 192523 . + . ID=CGI_10018880; scaffold914 TRF Tandem_Repeat 192490 192523 68 + . . scaffold914 flankbed promoter 233081 233241 . - . ID=CGI_10018881; scaffold914 WUBlastX LINE_RTE-X 233081 233296 97 - . . scaffold914 flankbed promoter 233033 233241 . - . ID=CGI_10018881; scaffold914 WUBlastX LINE_RTE-X 233033 233425 87 - . . scaffold916 flankbed promoter 17362 17387 . + . ID=CGI_10009053; scaffold916 TRF Tandem_Repeat 17362 17387 52 + . . scaffold916 flankbed promoter 32569 33320 . + . ID=CGI_10009056; scaffold916 TRF Tandem_Repeat 32569 33320 637 + . . scaffold916 flankbed promoter 128939 128978 . + . ID=CGI_10009060; scaffold916 TRF Tandem_Repeat 128939 128978 57 + . . scaffold919 flankbed promoter 44831 44831 . - . ID=CGI_10003313; scaffold919 WUBlastX DNA_Harbinger 44831 44902 41 - . . scaffold922 flankbed promoter 9292 10065 . - . ID=CGI_10005659; scaffold922 WUBlastX LINE_CR1 9292 10065 172 - . . scaffold922 flankbed promoter 95148 95175 . - . ID=CGI_10005662; scaffold922 TRF Tandem_Repeat 95148 95175 56 + . . scaffold922 flankbed promoter 124576 125367 . + . ID=CGI_10005663; scaffold922 TRF Tandem_Repeat 123508 125367 2052 + . . scaffold922 flankbed promoter 124576 125367 . + . ID=CGI_10005663; scaffold922 TRF Tandem_Repeat 123534 125367 2044 + . . scaffold924 flankbed promoter 39477 39923 . + . ID=CGI_10006838; scaffold924 WUBlastX DNA_Sola 39477 40019 74 + . . scaffold924 flankbed promoter 39540 39923 . + . ID=CGI_10006838; scaffold924 WUBlastX DNA_Sola 39540 40133 48 + . . scaffold925 flankbed promoter 19617 19641 . - . ID=CGI_10017408; scaffold925 TRF Tandem_Repeat 19617 19641 50 + . . scaffold925 flankbed promoter 131386 131678 . + . ID=CGI_10017413; scaffold925 WUBlastX LTR_Pao 128706 131678 2481 + . . scaffold925 flankbed promoter 223913 224593 . + . ID=CGI_10017420; scaffold925 WUBlastX LINE_CR1 223913 224593 243 + . . scaffold925 flankbed promoter 430147 430175 . + . ID=CGI_10017428; scaffold925 TRF Tandem_Repeat 430147 430175 58 + . . scaffold925 flankbed promoter 489271 489315 . + . ID=CGI_10017429; scaffold925 TRF Tandem_Repeat 489271 489315 81 + . . scaffold925 flankbed promoter 488708 488865 . + . ID=CGI_10017429; scaffold925 WUBlastX LINE_Penelope 488389 488865 58 + . . scaffold925 flankbed promoter 488708 488946 . + . ID=CGI_10017429; scaffold925 WUBlastX LINE_Penelope 488485 488946 113 + . . scaffold926 flankbed promoter 2102 2188 . - . ID=CGI_10011361; scaffold926 WUBlastX LTR_Ngaro 2102 2188 28 + . . scaffold926 flankbed promoter 2253 2464 . - . ID=CGI_10011361; scaffold926 WUBlastX LTR_Ngaro 2253 2477 80 + . . scaffold926 flankbed promoter 25646 25949 . - . ID=CGI_10011363; scaffold926 TRF Tandem_Repeat 25646 25949 545 + . . scaffold926 flankbed promoter 203177 203488 . + . ID=CGI_10011367; scaffold926 WUBlastX DNA_Sola 203177 203488 115 + . . scaffold926 flankbed promoter 202498 202540 . + . ID=CGI_10011367; scaffold926 WUBlastX DNA_Sola 201599 202540 412 + . . scaffold926 flankbed promoter 202546 203175 . + . ID=CGI_10011367; scaffold926 WUBlastX DNA_Sola 202546 203175 236 + . . scaffold929 flankbed promoter 144507 144549 . - . ID=CGI_10006346; scaffold929 TRF Tandem_Repeat 144507 144549 86 + . . scaffold929 flankbed promoter 144903 144968 . - . ID=CGI_10006346; scaffold929 TRF Tandem_Repeat 144903 144968 132 + . . scaffold929 flankbed promoter 144507 144549 . + . ID=CGI_10006347; scaffold929 TRF Tandem_Repeat 144507 144549 86 + . . scaffold929 flankbed promoter 144903 144968 . + . ID=CGI_10006347; scaffold929 TRF Tandem_Repeat 144903 144968 132 + . . scaffold93 flankbed promoter 15773 16207 . - . ID=CGI_10002717; scaffold93 WUBlastX DNA_Kolobok 15773 16207 21 + . . scaffold93 flankbed promoter 15773 16207 . + . ID=CGI_10002718; scaffold93 WUBlastX DNA_Kolobok 15773 16207 21 + . . scaffold930 flankbed promoter 3198 3237 . - . ID=CGI_10010183; scaffold930 TRF Tandem_Repeat 3198 3237 80 + . . scaffold930 flankbed promoter 226994 227087 . - . ID=CGI_10010200; scaffold930 TRF Tandem_Repeat 226994 227087 89 + . . scaffold930 flankbed promoter 227317 227363 . - . ID=CGI_10010200; scaffold930 TRF Tandem_Repeat 227317 227476 160 + . . scaffold930 flankbed promoter 226994 227087 . - . ID=CGI_10010201; scaffold930 TRF Tandem_Repeat 226994 227087 89 + . . scaffold930 flankbed promoter 227317 227476 . - . ID=CGI_10010201; scaffold930 TRF Tandem_Repeat 227317 227476 160 + . . scaffold930 flankbed promoter 227553 227644 . - . ID=CGI_10010201; scaffold930 TRF Tandem_Repeat 227553 227644 96 + . . scaffold930 flankbed promoter 229319 229343 . + . ID=CGI_10010202; scaffold930 TRF Tandem_Repeat 229319 229343 50 + . . scaffold930 flankbed promoter 244170 244304 . - . ID=CGI_10010203; scaffold930 WUBlastX DNA_TcMar-Fot1 244170 244598 101 - . . scaffold933 flankbed promoter 284687 284730 . + . ID=CGI_10016719; scaffold933 TRF Tandem_Repeat 284687 284730 70 + . . scaffold933 flankbed promoter 320706 320798 . + . ID=CGI_10016722; scaffold933 TRF Tandem_Repeat 320706 320798 109 + . . scaffold933 flankbed promoter 320705 320799 . + . ID=CGI_10016722; scaffold933 TRF Tandem_Repeat 320705 320799 145 + . . scaffold933 flankbed promoter 320907 320918 . + . ID=CGI_10016722; scaffold933 WUBlastX LINE_L2 320907 321002 24 + . . scaffold933 flankbed promoter 338503 338542 . + . ID=CGI_10016723; scaffold933 TRF Tandem_Repeat 338503 338542 80 + . . scaffold933 flankbed promoter 350572 350613 . + . ID=CGI_10016724; scaffold933 TRF Tandem_Repeat 350572 350613 84 + . . scaffold933 flankbed promoter 431407 431449 . + . ID=CGI_10016726; scaffold933 WUBlastX DNA_Zator 431153 431449 193 + . . scaffold933 flankbed promoter 432344 432406 . + . ID=CGI_10016726; scaffold933 WUBlastX DNA_Zator 432344 432502 101 + . . scaffold934 flankbed promoter 29099 29151 . + . ID=CGI_10015430; scaffold934 TRF Tandem_Repeat 29099 29151 61 + . . scaffold934 flankbed promoter 46861 46896 . - . ID=CGI_10015431; scaffold934 TRF Tandem_Repeat 46861 46896 72 + . . scaffold934 flankbed promoter 91263 91290 . - . ID=CGI_10015436; scaffold934 TRF Tandem_Repeat 91263 91290 56 + . . scaffold934 flankbed promoter 338535 338581 . + . ID=CGI_10015449; scaffold934 TRF Tandem_Repeat 338535 338581 94 + . . scaffold935 flankbed promoter 7939 8094 . + . ID=CGI_10005288; scaffold935 WUBlastX DNA_TcMar-Tc2 7939 8298 100 + . . scaffold935 flankbed promoter 7750 8094 . + . ID=CGI_10005288; scaffold935 WUBlastX DNA_TcMar-Tc2 7750 8298 94 + . . scaffold94 flankbed promoter 42492 42622 . + . ID=CGI_10013908; scaffold94 TRF Tandem_Repeat 42123 42622 774 + . . scaffold94 flankbed promoter 105325 105576 . - . ID=CGI_10013912; scaffold94 WUBlastX LTR_Copia 105325 105576 33 - . . scaffold94 flankbed promoter 105367 106247 . - . ID=CGI_10013912; scaffold94 WUBlastX LTR_Gypsy 105367 106584 490 - . . scaffold94 flankbed promoter 105544 106247 . - . ID=CGI_10013912; scaffold94 WUBlastX LTR_Gypsy-Cigr 105544 106572 756 - . . scaffold94 flankbed promoter 263639 263692 . + . ID=CGI_10013920; scaffold94 TRF Tandem_Repeat 263639 263692 108 + . . scaffold941 flankbed promoter 2120 2166 . - . ID=CGI_10003702; scaffold941 TRF Tandem_Repeat 2120 2166 94 + . . scaffold941 flankbed promoter 2435 2486 . - . ID=CGI_10003702; scaffold941 TRF Tandem_Repeat 2435 2486 104 + . . scaffold942 flankbed promoter 274151 274181 . + . ID=CGI_10019161; scaffold942 TRF Tandem_Repeat 274151 274181 62 + . . scaffold942 flankbed promoter 379421 379482 . + . ID=CGI_10019169; scaffold942 TRF Tandem_Repeat 379421 379482 124 + . . scaffold944 flankbed promoter 90953 90989 . - . ID=CGI_10005968; scaffold944 TRF Tandem_Repeat 90953 90989 74 + . . scaffold948 flankbed promoter 218239 218268 . + . ID=CGI_10020015; scaffold948 TRF Tandem_Repeat 218239 218268 51 + . . scaffold950 flankbed promoter 158231 158362 . + . ID=CGI_10022923; scaffold950 TRF Tandem_Repeat 157455 158362 968 + . . scaffold950 flankbed promoter 159203 159230 . + . ID=CGI_10022923; scaffold950 WUBlastX DNA_TcMar-Pogo 159203 159517 30 + . . scaffold950 flankbed promoter 363373 363504 . - . ID=CGI_10022928; scaffold950 WUBlastX LTR_Gypsy 363373 363504 20 + . . scaffold950 flankbed promoter 450981 451410 . - . ID=CGI_10022930; scaffold950 WUBlastX LTR_Gypsy-Cigr 450981 451547 302 + . . scaffold950 flankbed promoter 450984 451410 . - . ID=CGI_10022930; scaffold950 WUBlastX LTR_Gypsy-Cigr 450984 451421 304 + . . scaffold951 flankbed promoter 19611 19907 . + . ID=CGI_10009146; scaffold951 TRF Tandem_Repeat 19611 19907 352 + . . scaffold951 flankbed promoter 37214 37260 . + . ID=CGI_10009147; scaffold951 TRF Tandem_Repeat 37214 37260 94 + . . scaffold951 flankbed promoter 150465 150575 . + . ID=CGI_10009152; scaffold951 TRF Tandem_Repeat 150465 150575 114 + . . scaffold951 flankbed promoter 166131 166312 . - . ID=CGI_10009153; scaffold951 WUBlastX LINE_RTE-X 166131 166583 76 + . . scaffold951 flankbed promoter 166576 166824 . + . ID=CGI_10009154; scaffold951 WUBlastX LINE_RTE-X 166576 166824 104 + . . scaffold951 flankbed promoter 166444 166583 . + . ID=CGI_10009154; scaffold951 WUBlastX LINE_RTE-X 166131 166583 76 + . . scaffold954 flankbed promoter 185104 185182 . - . ID=CGI_10010744; scaffold954 WUBlastX DNA_P 185104 185424 92 + . . scaffold954 flankbed promoter 184183 184917 . - . ID=CGI_10010744; scaffold954 WUBlastX DNA_Academ 183943 184917 397 - . . scaffold955 flankbed promoter 59757 59798 . + . ID=CGI_10009849; scaffold955 TRF Tandem_Repeat 59757 59798 52 + . . scaffold955 flankbed promoter 102198 102240 . + . ID=CGI_10009853; scaffold955 TRF Tandem_Repeat 102198 102240 86 + . . scaffold955 flankbed promoter 102788 102819 . + . ID=CGI_10009853; scaffold955 TRF Tandem_Repeat 102788 102819 64 + . . scaffold960 flankbed promoter 128248 128252 . + . ID=CGI_10013409; scaffold960 TRF Tandem_Repeat 128211 128252 75 + . . scaffold962 flankbed promoter 17440 17445 . + . ID=CGI_10027631; scaffold962 WUBlastX LTR_Gypsy 17440 17592 75 + . . scaffold962 flankbed promoter 193390 193481 . - . ID=CGI_10027637; scaffold962 TRF Tandem_Repeat 193390 193481 112 + . . scaffold962 flankbed promoter 278394 278473 . - . ID=CGI_10027640; scaffold962 TRF Tandem_Repeat 278394 278473 151 + . . scaffold962 flankbed promoter 388287 388853 . - . ID=CGI_10027645; scaffold962 WUBlastX LINE_L1 388140 388853 59 - . . scaffold962 flankbed promoter 388650 388853 . - . ID=CGI_10027646; scaffold962 WUBlastX LINE_L1 388140 388853 59 - . . scaffold962 flankbed promoter 894909 894952 . + . ID=CGI_10027670; scaffold962 TRF Tandem_Repeat 894909 894952 61 + . . scaffold962 flankbed promoter 894909 894961 . + . ID=CGI_10027670; scaffold962 TRF Tandem_Repeat 894909 894961 70 + . . scaffold962 flankbed promoter 1237571 1237687 . - . ID=CGI_10027691; scaffold962 WUBlastX LINE_RTE-X 1237571 1237687 45 + . . scaffold962 flankbed promoter 1237767 1237957 . - . ID=CGI_10027691; scaffold962 WUBlastX LINE_RTE-X 1237767 1238039 27 + . . scaffold962 flankbed promoter 1458984 1459032 . + . ID=CGI_10027699; scaffold962 TRF Tandem_Repeat 1458984 1459032 98 + . . scaffold963 flankbed promoter 78365 78395 . + . ID=CGI_10015617; scaffold963 TRF Tandem_Repeat 78338 78395 109 + . . scaffold963 flankbed promoter 149123 149220 . + . ID=CGI_10015622; scaffold963 TRF Tandem_Repeat 149123 149220 196 + . . scaffold963 flankbed promoter 149222 149261 . + . ID=CGI_10015622; scaffold963 TRF Tandem_Repeat 149222 149261 80 + . . scaffold964 flankbed promoter 71048 71078 . - . ID=CGI_10009729; scaffold964 TRF Tandem_Repeat 71048 71078 62 + . . scaffold964 flankbed promoter 70855 71005 . - . ID=CGI_10009729; scaffold964 WUBlastX LTR_Gypsy 70820 71005 24 + . . scaffold964 flankbed promoter 70820 70912 . + . ID=CGI_10009730; scaffold964 WUBlastX LTR_Gypsy 70820 71005 24 + . . scaffold964 flankbed promoter 240385 240419 . - . ID=CGI_10009735; scaffold964 TRF Tandem_Repeat 240385 240419 70 + . . scaffold967 flankbed promoter 144233 144466 . - . ID=CGI_10015455; scaffold967 WUBlastX LTR_Gypsy 144233 144466 89 - . . scaffold967 flankbed promoter 144020 144415 . - . ID=CGI_10015455; scaffold967 WUBlastX LTR_Gypsy 144020 144415 52 - . . scaffold967 flankbed promoter 144239 144466 . - . ID=CGI_10015456; scaffold967 WUBlastX LTR_Gypsy 144233 144466 89 - . . scaffold967 flankbed promoter 144239 144415 . - . ID=CGI_10015456; scaffold967 WUBlastX LTR_Gypsy 144020 144415 52 - . . scaffold967 flankbed promoter 192131 192251 . - . ID=CGI_10015458; scaffold967 TRF Tandem_Repeat 192131 192322 210 + . . scaffold967 flankbed promoter 329769 329772 . + . ID=CGI_10015463; scaffold967 TRF Tandem_Repeat 329731 329772 84 + . . scaffold967 flankbed promoter 376274 376313 . - . ID=CGI_10015468; scaffold967 TRF Tandem_Repeat 376274 376313 71 + . . scaffold967 flankbed promoter 423651 423690 . - . ID=CGI_10015470; scaffold967 TRF Tandem_Repeat 423651 423690 80 + . . scaffold97 flankbed promoter 15293 15436 . - . ID=CGI_10005681; scaffold97 WUBlastX LTR_Gypsy 15293 15436 23 + . . scaffold97 flankbed promoter 15564 15932 . - . ID=CGI_10005681; scaffold97 WUBlastX LTR_Gypsy-Cigr 15564 16019 148 + . . scaffold97 flankbed promoter 38943 38957 . + . ID=CGI_10005683; scaffold97 WUBlastX DNA_Sola 37767 38957 227 + . . scaffold97 flankbed promoter 41387 41834 . - . ID=CGI_10005684; scaffold97 TRF Tandem_Repeat 41005 41834 258 + . . scaffold97 flankbed promoter 41387 41834 . - . ID=CGI_10005684; scaffold97 TRF Tandem_Repeat 41005 41834 382 + . . scaffold97 flankbed promoter 108167 108898 . + . ID=CGI_10005688; scaffold97 WUBlastX LINE_CR1 108167 108898 196 + . . scaffold973 flankbed promoter 13358 13412 . + . ID=CGI_10021542; scaffold973 TRF Tandem_Repeat 13358 13412 110 + . . scaffold973 flankbed promoter 59620 59679 . + . ID=CGI_10021545; scaffold973 TRF Tandem_Repeat 59490 59679 195 + . . scaffold973 flankbed promoter 73116 73175 . + . ID=CGI_10021546; scaffold973 TRF Tandem_Repeat 73108 73175 136 + . . scaffold973 flankbed promoter 472735 472776 . + . ID=CGI_10021558; scaffold973 TRF Tandem_Repeat 472735 472776 68 + . . scaffold973 flankbed promoter 472739 472781 . + . ID=CGI_10021558; scaffold973 TRF Tandem_Repeat 472739 472781 54 + . . scaffold973 flankbed promoter 507203 507757 . + . ID=CGI_10021559; scaffold973 TRF Tandem_Repeat 507203 507757 894 + . . scaffold973 flankbed promoter 607930 607965 . - . ID=CGI_10021562; scaffold973 TRF Tandem_Repeat 607930 607965 54 + . . scaffold975 flankbed promoter 58568 58971 . + . ID=CGI_10013316; scaffold975 TRF Tandem_Repeat 58568 58971 754 + . . scaffold975 flankbed promoter 111779 111832 . - . ID=CGI_10013323; scaffold975 TRF Tandem_Repeat 111779 111832 108 + . . scaffold976 flankbed promoter 99879 99945 . + . ID=CGI_10014006; scaffold976 TRF Tandem_Repeat 99879 99945 134 + . . scaffold976 flankbed promoter 265830 265964 . + . ID=CGI_10014014; scaffold976 TRF Tandem_Repeat 265830 265964 101 + . . scaffold977 flankbed promoter 164539 164556 . + . ID=CGI_10017164; scaffold977 WUBlastX DNA_hAT 164539 165288 372 + . . scaffold977 flankbed promoter 189486 189607 . - . ID=CGI_10017167; scaffold977 TRF Tandem_Repeat 189486 190151 648 + . . scaffold977 flankbed promoter 196751 196958 . + . ID=CGI_10017168; scaffold977 TRF Tandem_Repeat 196751 196958 239 + . . scaffold977 flankbed promoter 447758 447813 . - . ID=CGI_10017173; scaffold977 TRF Tandem_Repeat 447758 447813 112 + . . scaffold977 flankbed promoter 462919 462961 . + . ID=CGI_10017174; scaffold977 TRF Tandem_Repeat 462919 462961 77 + . . scaffold977 flankbed promoter 479867 479967 . - . ID=CGI_10017175; scaffold977 TRF Tandem_Repeat 479867 479967 96 + . . scaffold98 flankbed promoter 225775 225972 . + . ID=CGI_10012782; scaffold98 TRF Tandem_Repeat 225775 225972 324 + . . scaffold98 flankbed promoter 279160 279288 . + . ID=CGI_10012787; scaffold98 TRF Tandem_Repeat 279160 279288 152 + . . scaffold98 flankbed promoter 310081 310961 . - . ID=CGI_10012789; scaffold98 WUBlastX LTR_Gypsy 310081 311232 474 - . . scaffold98 flankbed promoter 310258 310961 . - . ID=CGI_10012789; scaffold98 WUBlastX LTR_Gypsy-Cigr 310258 311238 716 - . . scaffold98 flankbed promoter 310039 310290 . - . ID=CGI_10012789; scaffold98 WUBlastX LTR_Copia 310039 310290 30 - . . scaffold980 flankbed promoter 41550 42135 . - . ID=CGI_10019203; scaffold980 WUBlastX LINE_L2 41550 42206 288 - . . scaffold980 flankbed promoter 109458 109540 . + . ID=CGI_10019208; scaffold980 TRF Tandem_Repeat 109397 109540 175 + . . scaffold980 flankbed promoter 110020 110230 . + . ID=CGI_10019208; scaffold980 TRF Tandem_Repeat 110020 110230 262 + . . scaffold980 flankbed promoter 130953 131114 . - . ID=CGI_10019210; scaffold980 WUBlastX LINE_RTE-X 130953 131114 52 + . . scaffold980 flankbed promoter 130932 131234 . - . ID=CGI_10019210; scaffold980 WUBlastX LINE_RTE-X 130932 131234 30 + . . scaffold980 flankbed promoter 156757 156796 . + . ID=CGI_10019212; scaffold980 TRF Tandem_Repeat 156757 156796 71 + . . scaffold980 flankbed promoter 242149 242283 . - . ID=CGI_10019216; scaffold980 WUBlastX DNA_Academ 241948 242283 89 - . . scaffold980 flankbed promoter 242261 242881 . - . ID=CGI_10019216; scaffold980 WUBlastX DNA_Academ 242261 242881 299 - . . scaffold980 flankbed promoter 242879 243148 . - . ID=CGI_10019216; scaffold980 WUBlastX DNA_Academ 242879 243469 297 - . . scaffold980 flankbed promoter 242149 242241 . - . ID=CGI_10019216; scaffold980 WUBlastX DNA_Academ 241999 242241 91 - . . scaffold980 flankbed promoter 243439 243902 . - . ID=CGI_10019217; scaffold980 WUBlastX DNA_Academ 243439 244008 198 - . . scaffold980 flankbed promoter 242903 243469 . - . ID=CGI_10019217; scaffold980 WUBlastX DNA_Academ 242879 243469 297 - . . scaffold980 flankbed promoter 243607 243902 . - . ID=CGI_10019217; scaffold980 WUBlastX DNA_Academ 243607 243993 270 - . . scaffold980 flankbed promoter 269235 269259 . - . ID=CGI_10019218; scaffold980 TRF Tandem_Repeat 269235 269259 50 + . . scaffold980 flankbed promoter 398534 398586 . - . ID=CGI_10019226; scaffold980 TRF Tandem_Repeat 398534 398586 106 + . . scaffold980 flankbed promoter 398534 398586 . + . ID=CGI_10019227; scaffold980 TRF Tandem_Repeat 398534 398586 106 + . . scaffold980 flankbed promoter 558244 558298 . + . ID=CGI_10019245; scaffold980 TRF Tandem_Repeat 558244 558298 92 + . . scaffold983 flankbed promoter 89930 89974 . + . ID=CGI_10014027; scaffold983 TRF Tandem_Repeat 89930 89974 90 + . . scaffold983 flankbed promoter 131926 132508 . + . ID=CGI_10014029; scaffold983 WUBlastX DNA_Maverick 131453 132508 547 + . . scaffold983 flankbed promoter 295703 295847 . + . ID=CGI_10014033; scaffold983 TRF Tandem_Repeat 295703 295847 218 + . . scaffold983 flankbed promoter 295689 295787 . + . ID=CGI_10014033; scaffold983 TRF Tandem_Repeat 295689 295787 58 + . . scaffold983 flankbed promoter 295842 295991 . + . ID=CGI_10014033; scaffold983 TRF Tandem_Repeat 295842 295991 169 + . . scaffold984 flankbed promoter 1356 1389 . + . ID=CGI_10000576; scaffold984 TRF Tandem_Repeat 1356 1389 68 + . . scaffold986 flankbed promoter 5156 5213 . - . ID=CGI_10009955; scaffold986 TRF Tandem_Repeat 5156 5213 107 + . . scaffold986 flankbed promoter 202551 202584 . + . ID=CGI_10009963; scaffold986 TRF Tandem_Repeat 202551 202584 59 + . . scaffold986 flankbed promoter 210163 210609 . - . ID=CGI_10009964; scaffold986 TRF Tandem_Repeat 210163 211271 1567 + . . scaffold987 flankbed promoter 89652 89768 . - . ID=CGI_10015837; scaffold987 TRF Tandem_Repeat 89652 89768 162 + . . scaffold987 flankbed promoter 89773 89872 . - . ID=CGI_10015837; scaffold987 TRF Tandem_Repeat 89773 89872 119 + . . scaffold987 flankbed promoter 310625 310811 . - . ID=CGI_10015852; scaffold987 TRF Tandem_Repeat 310625 310811 164 + . . scaffold987 flankbed promoter 436926 436955 . - . ID=CGI_10015856; scaffold987 TRF Tandem_Repeat 436926 436955 60 + . . scaffold99 flankbed promoter 22308 22342 . + . ID=CGI_10021189; scaffold99 TRF Tandem_Repeat 22308 22342 70 + . . scaffold99 flankbed promoter 357388 357966 . + . ID=CGI_10021202; scaffold99 WUBlastX LINE_CR1 357388 357966 167 + . . scaffold99 flankbed promoter 357583 358281 . + . ID=CGI_10021202; scaffold99 WUBlastX LINE_I 357583 358281 35 + . . scaffold99 flankbed promoter 523280 523779 . + . ID=CGI_10021210; scaffold99 WUBlastX LTR_Gypsy-Troyk 522967 523779 717 - . . scaffold99 flankbed promoter 523778 524101 . + . ID=CGI_10021210; scaffold99 WUBlastX LTR_Gypsy-Troyk 523778 524101 368 - . . scaffold99 flankbed promoter 524274 524279 . + . ID=CGI_10021210; scaffold99 WUBlastX DNA_Harbinger 524274 524489 57 + . . scaffold998 flankbed promoter 42989 43180 . + . ID=CGI_10006460; scaffold998 WUBlastX LTR_Pao 42989 43180 134 - . . scaffold998 flankbed promoter 43180 43302 . + . ID=CGI_10006460; scaffold998 WUBlastX LTR_Pao 43180 43302 29 - . . scaffold998 flankbed promoter 42894 43016 . + . ID=CGI_10006460; scaffold998 WUBlastX LTR_Pao 42894 43016 51 - . . scaffold998 flankbed promoter 66122 66137 . + . ID=CGI_10006461; scaffold998 TRF Tandem_Repeat 65997 66137 117 + . .