C22430 GLEAN mRNA 263 493 0.555898 + . ID=CGI_10000081; C22430 WUBlastX DNA_TcMar-Tc2 230 493 60 + . . C23316 GLEAN mRNA 929 1111 0.999999 - . ID=CGI_10000116; C23316 WUBlastX LTR_Ngaro 929 1675 117 - . . C23316 GLEAN mRNA 953 1111 0.999999 - . ID=CGI_10000116; C23316 WUBlastX LTR_Ngaro 953 1489 157 - . . C23316 GLEAN mRNA 644 660 0.999999 - . ID=CGI_10000116; C23316 WUBlastX LTR_Ngaro 547 660 32 - . . C23734 GLEAN mRNA 512 712 1 - . ID=CGI_10000149; C23734 WUBlastX LTR_Gypsy 23 724 246 - . . C23734 GLEAN mRNA 512 712 1 - . ID=CGI_10000149; C23734 WUBlastX LTR_Gypsy 26 964 217 - . . C24320 GLEAN mRNA 1545 1904 0.999372 - . ID=CGI_10000190; C24320 WUBlastX LTR_ERV1 1545 1904 27 - . . C24604 GLEAN mRNA 792 989 0.997918 - . ID=CGI_10000200; C24604 WUBlastX DNA_MuDR 792 989 42 - . . C25496 GLEAN mRNA 2006 2074 0.998748 + . ID=CGI_10000243; C25496 WUBlastX LINE_CR1 2006 2536 27 + . . C26320 GLEAN mRNA 2740 2964 0.481188 + . ID=CGI_10000297; C26320 WUBlastX LINE_L2 2710 2964 75 + . . C26472 GLEAN mRNA 173 535 0.999372 - . ID=CGI_10000305; C26472 WUBlastX LTR_Pao 173 730 39 - . . C26472 GLEAN mRNA 359 535 0.999372 - . ID=CGI_10000305; C26472 WUBlastX LTR_Gypsy 359 850 48 - . . C26674 GLEAN mRNA 2430 2483 0.99935 + . ID=CGI_10000320; C26674 TRF Tandem_Repeat 2430 2483 108 + . . C26674 GLEAN mRNA 2860 2913 0.99935 + . ID=CGI_10000320; C26674 TRF Tandem_Repeat 2860 2913 74 + . . C26860 GLEAN mRNA 180 285 0.999372 + . ID=CGI_10000331; C26860 WUBlastX DNA_TcMar-Tc1 180 311 27 + . . C26860 GLEAN mRNA 55 150 0.999372 + . ID=CGI_10000331; C26860 WUBlastX DNA_TcMar-Tc1 55 150 34 + . . C26936 GLEAN mRNA 1323 1346 1 - . ID=CGI_10000336; C26936 WUBlastX LTR_Gypsy 1323 1346 20 - . . C26936 GLEAN mRNA 2202 3359 1 - . ID=CGI_10000336; C26936 WUBlastX LTR_Gypsy 2202 3359 178 - . . C26936 GLEAN mRNA 2205 2915 1 - . ID=CGI_10000336; C26936 WUBlastX LTR_Gypsy 2205 2915 412 - . . C26936 GLEAN mRNA 1613 2275 1 - . ID=CGI_10000336; C26936 WUBlastX LTR_Gypsy 1613 2275 350 - . . C26936 GLEAN mRNA 2271 3059 1 - . ID=CGI_10000336; C26936 WUBlastX LTR_Gypsy 2271 3059 408 - . . C26936 GLEAN mRNA 1484 2260 1 - . ID=CGI_10000336; C26936 WUBlastX LTR_Gypsy 1484 2260 314 - . . C26936 GLEAN mRNA 2271 2831 1 - . ID=CGI_10000336; C26936 WUBlastX LTR_Gypsy-Gmr1 2271 2831 413 - . . C27100 GLEAN mRNA 2374 2553 0.994137 + . ID=CGI_10000343; C27100 WUBlastX DNA_IS4EU 2356 2553 61 + . . scaffold27654 GLEAN mRNA 1047 1442 0.999376 - . ID=CGI_10000367; scaffold27654 WUBlastX DNA_Crypton 1047 1442 29 - . . scaffold27654 GLEAN mRNA 2371 2682 0.999068 + . ID=CGI_10000368; scaffold27654 WUBlastX DNA_IS4EU 2371 2682 54 + . . C27694 GLEAN mRNA 2694 3020 1 - . ID=CGI_10000376; C27694 WUBlastX DNA_Maverick 2694 3140 230 - . . C27694 GLEAN mRNA 2574 2687 1 - . ID=CGI_10000376; C27694 WUBlastX DNA_Maverick 2574 2687 66 - . . C27694 GLEAN mRNA 2532 2566 1 - . ID=CGI_10000376; C27694 WUBlastX DNA_Maverick 2459 2566 46 - . . C27694 GLEAN mRNA 2556 2702 1 - . ID=CGI_10000376; C27694 WUBlastX DNA_Maverick 2556 2702 56 - . . C27694 GLEAN mRNA 2709 3020 1 - . ID=CGI_10000376; C27694 WUBlastX DNA_Maverick 2709 3227 54 - . . C28218 GLEAN mRNA 3906 4367 0.999999 - . ID=CGI_10000410; C28218 WUBlastX LTR_Pao 3906 5288 1273 - . . C28258 GLEAN mRNA 3417 3584 0.593325 + . ID=CGI_10000414; C28258 WUBlastX LINE_L1-Tx1 3216 3584 49 + . . C28258 GLEAN mRNA 3417 3872 0.593325 + . ID=CGI_10000414; C28258 WUBlastX LINE_I 3216 3872 36 + . . C28310 GLEAN mRNA 1906 1980 0.999064 - . ID=CGI_10000419; C28310 WUBlastX LINE_CR1 1648 1980 45 - . . C28348 GLEAN mRNA 3411 3479 1 - . ID=CGI_10000423; C28348 WUBlastX LTR_Gypsy 3411 3479 23 + . . C28512 GLEAN mRNA 3730 4095 1 + . ID=CGI_10000437; C28512 WUBlastX DNA_Kolobok-IS4 3730 4095 43 + . . C28512 GLEAN mRNA 4435 4572 1 + . ID=CGI_10000437; C28512 WUBlastX DNA_Kolobok-IS4 4435 4572 82 + . . C28592 GLEAN mRNA 2199 2411 1 + . ID=CGI_10000444; C28592 WUBlastX DNA_Kolobok-Hyd 2199 2411 46 + . . C28622 GLEAN mRNA 323 508 0.332993 + . ID=CGI_10000452; C28622 WUBlastX DNA_Harbinger 323 508 25 + . . scaffold29126 GLEAN mRNA 3861 3947 1 - . ID=CGI_10000483; scaffold29126 TRF Tandem_Repeat 3861 3947 122 + . . scaffold29126 GLEAN mRNA 4041 4175 1 - . ID=CGI_10000483; scaffold29126 TRF Tandem_Repeat 4041 4175 76 + . . scaffold29126 GLEAN mRNA 4621 4649 1 - . ID=CGI_10000483; scaffold29126 WUBlastX LINE_L2 4621 5991 702 - . . C29186 GLEAN mRNA 1674 1802 0.999064 - . ID=CGI_10000500; C29186 TRF Tandem_Repeat 1674 1802 130 + . . C29186 GLEAN mRNA 1664 1786 0.999064 - . ID=CGI_10000500; C29186 TRF Tandem_Repeat 1664 1786 185 + . . C29186 GLEAN mRNA 383 1144 0.999064 - . ID=CGI_10000500; C29186 WUBlastX LINE_RTE-X 383 1144 216 - . . C29388 GLEAN mRNA 2704 2944 0.998536 + . ID=CGI_10000526; C29388 TRF Tandem_Repeat 2704 2944 441 + . . C29388 GLEAN mRNA 5096 5572 0.998536 + . ID=CGI_10000526; C29388 WUBlastX LINE_RTE-X 5096 5611 41 + . . C29388 GLEAN mRNA 3837 4310 0.998536 + . ID=CGI_10000526; C29388 WUBlastX LTR_Gypsy-Cigr 3837 4310 153 + . . C29388 GLEAN mRNA 3852 4424 0.998536 + . ID=CGI_10000526; C29388 WUBlastX LTR_Gypsy-Cigr 3852 4424 138 + . . C29388 GLEAN mRNA 3690 4307 0.998536 + . ID=CGI_10000526; C29388 WUBlastX LTR_Gypsy 3690 4307 99 + . . C29388 GLEAN mRNA 5015 5521 0.998536 + . ID=CGI_10000526; C29388 WUBlastX LINE_RTE-X 5015 5521 86 + . . C29438 GLEAN mRNA 2525 2809 1 + . ID=CGI_10000534; C29438 WUBlastX LINE_RTE-X 2525 2809 73 + . . C29438 GLEAN mRNA 2525 2746 1 + . ID=CGI_10000534; C29438 WUBlastX LINE_RTE-X 2525 2746 99 + . . C29438 GLEAN mRNA 3436 3993 1 + . ID=CGI_10000534; C29438 WUBlastX LINE_L2 3436 3993 55 + . . C29438 GLEAN mRNA 4440 5207 1 + . ID=CGI_10000534; C29438 WUBlastX LINE_RTE-X 4440 5207 220 + . . C29438 GLEAN mRNA 2486 2695 1 + . ID=CGI_10000534; C29438 WUBlastX LINE_RTE-X 2486 2695 84 + . . C29438 GLEAN mRNA 4058 4372 1 + . ID=CGI_10000534; C29438 WUBlastX LINE_RTE-X 4058 4372 173 + . . C29438 GLEAN mRNA 4037 4129 1 + . ID=CGI_10000534; C29438 WUBlastX LINE_L1-Tx1 4037 4129 24 + . . C29438 GLEAN mRNA 4058 4435 1 + . ID=CGI_10000534; C29438 WUBlastX LINE_RTE-X 4058 4435 112 + . . C29438 GLEAN mRNA 2504 2878 1 + . ID=CGI_10000534; C29438 WUBlastX LINE_RTE-X 2504 2878 37 + . . C29438 GLEAN mRNA 3631 4029 1 + . ID=CGI_10000534; C29438 WUBlastX LINE_RTE-X 3631 4029 182 + . . C29438 GLEAN mRNA 2525 2695 1 + . ID=CGI_10000534; C29438 WUBlastX LINE_RTE-X 2525 2695 109 + . . C29438 GLEAN mRNA 3544 3996 1 + . ID=CGI_10000534; C29438 WUBlastX LINE_RTE-X 3544 3996 110 + . . scaffold738 GLEAN mRNA 1902 2183 1 + . ID=CGI_10000540; scaffold738 WUBlastX DNA_hAT-Tip100 1902 2183 98 + . . scaffold738 GLEAN mRNA 1935 2261 1 + . ID=CGI_10000540; scaffold738 WUBlastX DNA_hAT-Tip100 1935 2261 45 + . . scaffold738 GLEAN mRNA 1818 2153 1 + . ID=CGI_10000540; scaffold738 WUBlastX DNA_hAT-Tip100 1818 2153 63 + . . scaffold738 GLEAN mRNA 1929 2162 1 + . ID=CGI_10000540; scaffold738 WUBlastX DNA_hAT-Tip100 1929 2162 107 + . . scaffold29534 GLEAN mRNA 3072 3113 1 - . ID=CGI_10000544; scaffold29534 TRF Tandem_Repeat 3072 3113 57 + . . scaffold29534 GLEAN mRNA 1313 2338 1 - . ID=CGI_10000544; scaffold29534 WUBlastX LINE_RTE-X 1313 2338 253 + . . scaffold29534 GLEAN mRNA 1373 2812 1 - . ID=CGI_10000544; scaffold29534 WUBlastX LINE_RTE-X 1373 2812 158 + . . scaffold29534 GLEAN mRNA 1373 2545 1 - . ID=CGI_10000544; scaffold29534 WUBlastX LINE_RTE-X 1373 2545 228 + . . scaffold29534 GLEAN mRNA 1208 1834 1 - . ID=CGI_10000544; scaffold29534 WUBlastX LINE_L1 1208 1834 30 + . . scaffold29598 GLEAN mRNA 3215 3796 0.999943 - . ID=CGI_10000548; scaffold29598 WUBlastX LINE_RTE-X 3215 3796 412 - . . scaffold29598 GLEAN mRNA 2770 3006 0.999943 - . ID=CGI_10000548; scaffold29598 WUBlastX LINE_RTE-X 2770 3006 135 - . . scaffold29598 GLEAN mRNA 3323 4000 0.999943 - . ID=CGI_10000548; scaffold29598 WUBlastX LINE_L2 3323 4000 49 - . . C29788 GLEAN mRNA 5714 6286 0.72793 + . ID=CGI_10000560; C29788 WUBlastX LINE_L1 5714 6286 88 + . . C29788 GLEAN mRNA 5843 6376 0.72793 + . ID=CGI_10000560; C29788 WUBlastX LINE_L1 5843 6376 64 + . . C29788 GLEAN mRNA 5576 6241 0.72793 + . ID=CGI_10000560; C29788 WUBlastX LINE_L1 5576 6241 80 + . . scaffold984 GLEAN mRNA 3347 3826 0.999998 + . ID=CGI_10000576; scaffold984 WUBlastX LINE_L1-Tx1 3347 3826 63 + . . scaffold984 GLEAN mRNA 3335 3736 0.999998 + . ID=CGI_10000576; scaffold984 WUBlastX LINE_L1-Tx1 3335 3736 64 + . . C30058 GLEAN mRNA 1609 2175 0.700712 - . ID=CGI_10000592; C30058 WUBlastX LINE_L2 1609 2175 192 + . . C30058 GLEAN mRNA 1567 1830 0.700712 - . ID=CGI_10000592; C30058 WUBlastX LINE_L2 1567 1830 58 + . . C30118 GLEAN mRNA 633 751 0.543283 + . ID=CGI_10000594; C30118 WUBlastX LINE_Rex-Babar 323 751 32 + . . C30140 GLEAN mRNA 1968 2000 0.618186 + . ID=CGI_10000597; C30140 WUBlastX LTR_Gypsy 1794 2000 33 + . . C30140 GLEAN mRNA 1968 2024 0.618186 + . ID=CGI_10000597; C30140 WUBlastX LTR_Gypsy 1842 2024 40 + . . C30458 GLEAN mRNA 5525 5845 1 - . ID=CGI_10000625; C30458 WUBlastX LINE_L1 5525 5845 96 + . . C30458 GLEAN mRNA 5080 5529 1 - . ID=CGI_10000625; C30458 WUBlastX LINE_L1 5080 5529 193 + . . C30458 GLEAN mRNA 5579 5905 1 - . ID=CGI_10000625; C30458 WUBlastX LINE_L1-Tx1 5579 5905 57 + . . C30500 GLEAN mRNA 2693 3604 0.993024 - . ID=CGI_10000629; C30500 TRF Tandem_Repeat 2693 3604 1208 + . . C30500 GLEAN mRNA 6631 6921 0.993024 - . ID=CGI_10000629; C30500 WUBlastX DNA_IS4EU 6631 7026 79 - . . C30632 GLEAN mRNA 2289 2340 0.999997 + . ID=CGI_10000645; C30632 TRF Tandem_Repeat 2289 2340 104 + . . C30632 GLEAN mRNA 805 845 0.999997 + . ID=CGI_10000645; C30632 WUBlastX DNA_Zator 687 845 47 + . . scaffold1596 GLEAN mRNA 6552 6731 0.997715 + . ID=CGI_10000647; scaffold1596 WUBlastX DNA_Crypton 6552 7001 61 + . . C30668 GLEAN mRNA 6887 6953 0.481188 + . ID=CGI_10000655; C30668 WUBlastX LINE_Penelope 6887 7204 66 + . . C30694 GLEAN mRNA 6009 6080 1 - . ID=CGI_10000657; C30694 WUBlastX LTR_Copia 6009 6080 24 - . . scaffold30682 GLEAN mRNA 2625 2650 1 - . ID=CGI_10000658; scaffold30682 TRF Tandem_Repeat 2625 2650 52 + . . scaffold30682 GLEAN mRNA 2696 2735 1 - . ID=CGI_10000658; scaffold30682 TRF Tandem_Repeat 2696 2735 80 + . . scaffold30682 GLEAN mRNA 1764 2015 1 - . ID=CGI_10000658; scaffold30682 WUBlastX DNA_Harbinger 1764 2015 62 - . . scaffold30682 GLEAN mRNA 3189 3341 1 - . ID=CGI_10000658; scaffold30682 WUBlastX DNA_Harbinger 3189 3341 71 - . . scaffold30814 GLEAN mRNA 7661 7807 0.998023 - . ID=CGI_10000671; scaffold30814 WUBlastX LINE_RTE-X 7661 7807 69 - . . scaffold30814 GLEAN mRNA 7062 7637 0.998023 - . ID=CGI_10000671; scaffold30814 WUBlastX LINE_RTE-X 7062 7637 101 - . . scaffold30814 GLEAN mRNA 7682 7873 0.998023 - . ID=CGI_10000671; scaffold30814 WUBlastX LINE_RTE-X 7682 7873 45 - . . C30848 GLEAN mRNA 7584 7622 1 + . ID=CGI_10000680; C30848 TRF Tandem_Repeat 7584 7622 78 + . . C31070 GLEAN mRNA 4331 5209 0.992577 - . ID=CGI_10000699; C31070 WUBlastX DNA_IS4EU 4331 5209 31 - . . C31070 GLEAN mRNA 4265 4654 0.992577 - . ID=CGI_10000699; C31070 WUBlastX DNA_IS4EU 4265 4654 69 - . . scaffold31090 GLEAN mRNA 7563 7587 1 + . ID=CGI_10000703; scaffold31090 TRF Tandem_Repeat 7563 7587 50 + . . C31096 GLEAN mRNA 6632 6700 0.999978 - . ID=CGI_10000705; C31096 WUBlastX LTR_Ngaro 6632 7126 210 - . . C31096 GLEAN mRNA 5468 5737 0.999978 - . ID=CGI_10000705; C31096 WUBlastX LTR_DIRS 5468 5737 29 - . . C31096 GLEAN mRNA 5737 6378 0.999978 - . ID=CGI_10000705; C31096 WUBlastX LTR_Ngaro 5737 6378 469 - . . C31096 GLEAN mRNA 4637 5020 0.999978 - . ID=CGI_10000705; C31096 WUBlastX LINE_RTE-X 4637 5020 84 - . . C31096 GLEAN mRNA 5513 5776 0.999978 - . ID=CGI_10000705; C31096 WUBlastX LTR_Ngaro 5513 5776 151 - . . C31096 GLEAN mRNA 6578 6700 0.999978 - . ID=CGI_10000705; C31096 WUBlastX LTR_Ngaro 6578 7393 156 - . . C31096 GLEAN mRNA 5782 6486 0.999978 - . ID=CGI_10000705; C31096 WUBlastX LTR_DIRS 5782 6486 28 - . . C31130 GLEAN mRNA 6126 6275 0.999998 - . ID=CGI_10000707; C31130 WUBlastX LINE_RTE-BovB 6126 6275 44 + . . C31130 GLEAN mRNA 5984 6106 0.999998 - . ID=CGI_10000707; C31130 WUBlastX LINE_RTE-BovB 5984 6106 51 + . . scaffold462 GLEAN mRNA 6244 6323 1 + . ID=CGI_10000714; scaffold462 TRF Tandem_Repeat 6244 6323 160 + . . scaffold462 GLEAN mRNA 4411 5175 1 + . ID=CGI_10000714; scaffold462 WUBlastX LINE_Penelope 4411 5175 109 + . . C31322 GLEAN mRNA 7200 7242 1 - . ID=CGI_10000731; C31322 TRF Tandem_Repeat 7200 7242 50 + . . C31322 GLEAN mRNA 7291 8349 1 - . ID=CGI_10000731; C31322 WUBlastX LINE_RTE-X 7291 8349 161 - . . C31322 GLEAN mRNA 7288 8130 1 - . ID=CGI_10000731; C31322 WUBlastX LINE_RTE-X 7288 8130 239 - . . scaffold31382 GLEAN mRNA 6181 6306 0.573096 - . ID=CGI_10000732; scaffold31382 WUBlastX LTR_Pao 6181 6306 110 + . . scaffold31382 GLEAN mRNA 6178 6279 0.573096 - . ID=CGI_10000732; scaffold31382 WUBlastX LTR_Pao 6178 6279 112 + . . scaffold31334 GLEAN mRNA 235 1062 0.999996 + . ID=CGI_10000734; scaffold31334 WUBlastX DNA_Sola 235 1062 182 + . . C31366 GLEAN mRNA 6114 6155 0.999547 - . ID=CGI_10000739; C31366 TRF Tandem_Repeat 6114 6155 52 + . . C31366 GLEAN mRNA 5311 5805 0.999547 - . ID=CGI_10000739; C31366 WUBlastX LINE_L1-Tx1 5311 5805 46 + . . C31366 GLEAN mRNA 5311 5661 0.999547 - . ID=CGI_10000739; C31366 WUBlastX LINE_L1-Tx1 5311 5661 65 + . . C31366 GLEAN mRNA 4019 4114 0.999547 - . ID=CGI_10000739; C31366 WUBlastX DNA_Academ 4019 4114 32 + . . C31366 GLEAN mRNA 4143 4196 0.999547 - . ID=CGI_10000739; C31366 WUBlastX DNA_Academ 4143 4196 24 + . . C31366 GLEAN mRNA 1807 2079 0.999547 - . ID=CGI_10000739; C31366 WUBlastX DNA_Academ 1807 2079 87 - . . scaffold31388 GLEAN mRNA 5151 5375 0.644139 - . ID=CGI_10000740; scaffold31388 WUBlastX DNA_Zator 5151 5375 29 - . . scaffold31388 GLEAN mRNA 4844 5029 0.644139 - . ID=CGI_10000740; scaffold31388 WUBlastX DNA_Zator 4844 5029 33 - . . scaffold31388 GLEAN mRNA 4357 4668 0.644139 - . ID=CGI_10000740; scaffold31388 WUBlastX DNA_Zator 4357 4668 113 - . . scaffold31388 GLEAN mRNA 5109 5339 0.644139 - . ID=CGI_10000740; scaffold31388 WUBlastX DNA_Zator 5109 5339 82 - . . scaffold31388 GLEAN mRNA 5648 6169 0.644139 - . ID=CGI_10000740; scaffold31388 WUBlastX DNA_Zator 5648 6169 207 - . . scaffold31388 GLEAN mRNA 6145 7962 0.644139 - . ID=CGI_10000740; scaffold31388 WUBlastX DNA_Zator 6145 7962 645 - . . C31414 GLEAN mRNA 6219 6866 0.561405 + . ID=CGI_10000746; C31414 WUBlastX LTR_Gypsy 6219 6866 61 + . . C31414 GLEAN mRNA 6720 6992 0.561405 + . ID=CGI_10000746; C31414 WUBlastX LTR_Copia 6720 6992 56 + . . C31510 GLEAN mRNA 6532 6846 0.999797 + . ID=CGI_10000758; C31510 WUBlastX DNA_Harbinger 6532 6846 60 + . . scaffold31538 GLEAN mRNA 3185 3228 1 - . ID=CGI_10000764; scaffold31538 TRF Tandem_Repeat 3185 3228 88 + . . scaffold31538 GLEAN mRNA 4042 4695 0.997845 - . ID=CGI_10000765; scaffold31538 WUBlastX DNA_Maverick 4042 4695 31 - . . scaffold31538 GLEAN mRNA 5215 5592 0.997845 - . ID=CGI_10000765; scaffold31538 WUBlastX DNA_Maverick 5215 5592 105 - . . scaffold31538 GLEAN mRNA 5809 6096 0.997845 - . ID=CGI_10000765; scaffold31538 WUBlastX DNA_Maverick 5809 6096 91 - . . scaffold31538 GLEAN mRNA 6178 7914 0.997845 - . ID=CGI_10000765; scaffold31538 WUBlastX DNA_Maverick 6178 7914 252 - . . scaffold31538 GLEAN mRNA 4150 5217 0.997845 - . ID=CGI_10000765; scaffold31538 WUBlastX DNA_Maverick 4150 5217 556 - . . scaffold31538 GLEAN mRNA 5584 5862 0.997845 - . ID=CGI_10000765; scaffold31538 WUBlastX DNA_Maverick 5584 5862 136 - . . C31572 GLEAN mRNA 4851 4937 0.997651 + . ID=CGI_10000770; C31572 TRF Tandem_Repeat 4851 4937 95 + . . C31572 GLEAN mRNA 5033 5154 0.997651 + . ID=CGI_10000770; C31572 TRF Tandem_Repeat 5033 5154 147 + . . scaffold1565 GLEAN mRNA 7817 7951 1 + . ID=CGI_10000778; scaffold1565 WUBlastX LINE_L1-Tx1 7817 7951 23 - . . scaffold1565 GLEAN mRNA 6825 7412 1 + . ID=CGI_10000778; scaffold1565 WUBlastX LINE_L1-Tx1 6825 7412 29 - . . scaffold1565 GLEAN mRNA 7429 7791 1 + . ID=CGI_10000778; scaffold1565 WUBlastX LINE_L1-Tx1 7429 7791 92 - . . scaffold1565 GLEAN mRNA 6999 7469 1 + . ID=CGI_10000778; scaffold1565 WUBlastX LINE_L1-Tx1 6999 7469 30 - . . scaffold1565 GLEAN mRNA 7522 7845 1 + . ID=CGI_10000778; scaffold1565 WUBlastX LINE_L1-Tx1 7522 7845 73 - . . scaffold350 GLEAN mRNA 1816 2337 0.996578 - . ID=CGI_10000780; scaffold350 WUBlastX DNA_Academ 1816 2337 89 - . . scaffold350 GLEAN mRNA 1105 1123 0.996578 - . ID=CGI_10000780; scaffold350 WUBlastX DNA_Academ 965 1123 27 - . . scaffold350 GLEAN mRNA 1105 1123 0.996578 - . ID=CGI_10000780; scaffold350 WUBlastX DNA_Academ 1019 1123 33 - . . scaffold350 GLEAN mRNA 1141 1863 0.996578 - . ID=CGI_10000780; scaffold350 WUBlastX DNA_Academ 1141 1863 356 - . . scaffold350 GLEAN mRNA 1810 2073 0.996578 - . ID=CGI_10000780; scaffold350 WUBlastX DNA_Academ 1810 2073 89 - . . C31910 GLEAN mRNA 7876 8388 0.998023 - . ID=CGI_10000814; C31910 WUBlastX DNA_TcMar-Tc2 7876 8388 358 - . . scaffold31956 GLEAN mRNA 8298 8304 0.998023 + . ID=CGI_10000816; scaffold31956 WUBlastX LINE_L1 8298 9140 27 + . . scaffold31956 GLEAN mRNA 8433 9140 1 + . ID=CGI_10000817; scaffold31956 WUBlastX LINE_L1 8298 9140 27 + . . scaffold32140 GLEAN mRNA 1495 1803 0.840262 + . ID=CGI_10000846; scaffold32140 WUBlastX LTR_Gypsy-Cigr 1495 1803 80 + . . C32216 GLEAN mRNA 3097 3249 0.999212 + . ID=CGI_10000864; C32216 WUBlastX LINE_R1 3097 3249 22 + . . C32216 GLEAN mRNA 6219 6458 0.78994 + . ID=CGI_10000865; C32216 WUBlastX DNA_hAT-hATw 6219 6458 22 + . . C32222 GLEAN mRNA 2564 2845 0.999993 - . ID=CGI_10000866; C32222 WUBlastX DNA_Kolobok-IS4 2564 2845 74 - . . C32240 GLEAN mRNA 4211 4243 0.589705 - . ID=CGI_10000869; C32240 TRF Tandem_Repeat 4211 4243 66 + . . C32276 GLEAN mRNA 9395 9616 0.932261 - . ID=CGI_10000874; C32276 WUBlastX LTR_ERV1 9395 9616 24 - . . C32276 GLEAN mRNA 9452 9691 0.932261 - . ID=CGI_10000874; C32276 WUBlastX LTR_ERV1 9452 9691 27 - . . C32276 GLEAN mRNA 9446 9607 0.932261 - . ID=CGI_10000874; C32276 WUBlastX LTR_ERV1 9446 9607 31 - . . scaffold32300 GLEAN mRNA 10298 10525 1 - . ID=CGI_10000880; scaffold32300 WUBlastX DNA_hAT-Ac 10298 10576 78 - . . C32318 GLEAN mRNA 7551 7919 0.999998 + . ID=CGI_10000883; C32318 WUBlastX LINE_L2 7551 7919 63 - . . C32318 GLEAN mRNA 7512 7823 0.999998 + . ID=CGI_10000883; C32318 WUBlastX LINE_L2 7512 7823 71 - . . C32318 GLEAN mRNA 7548 8060 0.999998 + . ID=CGI_10000883; C32318 WUBlastX LINE_L1 7548 8060 56 - . . C32318 GLEAN mRNA 7548 7802 0.999998 + . ID=CGI_10000883; C32318 WUBlastX LINE_L1 7548 7802 93 - . . C32444 GLEAN mRNA 6586 6924 0.999221 + . ID=CGI_10000894; C32444 WUBlastX DNA_Sola 6586 6924 73 + . . scaffold32470 GLEAN mRNA 1135 1563 1 + . ID=CGI_10000898; scaffold32470 WUBlastX LTR_Gypsy 1135 1563 91 - . . scaffold32470 GLEAN mRNA 1269 1460 1 + . ID=CGI_10000898; scaffold32470 WUBlastX LTR_Gypsy 1269 1460 108 - . . scaffold32470 GLEAN mRNA 1221 1442 1 + . ID=CGI_10000898; scaffold32470 WUBlastX LTR_Gypsy 1221 1442 95 - . . scaffold32488 GLEAN mRNA 6023 6379 0.98602 - . ID=CGI_10000899; scaffold32488 WUBlastX DNA_MuDR 6023 6379 58 - . . C32512 GLEAN mRNA 6405 6641 0.651135 + . ID=CGI_10000906; C32512 WUBlastX LINE_RTE-X 6405 6641 53 + . . C32532 GLEAN mRNA 648 737 0.987944 - . ID=CGI_10000908; C32532 WUBlastX LINE_I-Nimb 648 1304 41 - . . C32532 GLEAN mRNA 435 737 0.987944 - . ID=CGI_10000908; C32532 WUBlastX LINE_I-Nimb 435 1109 37 - . . C32536 GLEAN mRNA 3746 4375 0.999661 - . ID=CGI_10000910; C32536 WUBlastX LINE_RTE-X 3746 4375 390 - . . C32536 GLEAN mRNA 4363 4767 0.999661 - . ID=CGI_10000910; C32536 WUBlastX LINE_RTE-X 4363 4767 231 - . . C32536 GLEAN mRNA 4324 4992 0.999661 - . ID=CGI_10000910; C32536 WUBlastX LINE_RTE-X 4324 4992 114 - . . C32578 GLEAN mRNA 9396 9482 0.649383 + . ID=CGI_10000916; C32578 WUBlastX LINE_L2 8766 9482 66 + . . C32578 GLEAN mRNA 9396 9518 0.649383 + . ID=CGI_10000916; C32578 WUBlastX LINE_L1 8892 9518 98 + . . scaffold693 GLEAN mRNA 8597 8655 0.999949 - . ID=CGI_10000930; scaffold693 TRF Tandem_Repeat 8597 8655 118 + . . scaffold693 GLEAN mRNA 9933 9971 0.999949 - . ID=CGI_10000930; scaffold693 WUBlastX LINE_RTE-BovB 9933 9971 25 + . . scaffold693 GLEAN mRNA 10157 10423 0.999949 - . ID=CGI_10000930; scaffold693 WUBlastX LINE_RTE-BovB 10157 10423 29 + . . scaffold693 GLEAN mRNA 10974 11165 0.999949 - . ID=CGI_10000930; scaffold693 WUBlastX LINE_RTE-BovB 10974 11165 37 + . . scaffold693 GLEAN mRNA 10974 11105 0.999949 - . ID=CGI_10000930; scaffold693 WUBlastX LINE_RTE-BovB 10974 11105 54 + . . scaffold693 GLEAN mRNA 10046 10360 0.999949 - . ID=CGI_10000930; scaffold693 WUBlastX LINE_RTE-BovB 10046 10360 21 + . . scaffold693 GLEAN mRNA 10175 10360 0.999949 - . ID=CGI_10000930; scaffold693 WUBlastX LINE_RTE-BovB 10175 10360 55 + . . scaffold693 GLEAN mRNA 10491 10583 0.999949 - . ID=CGI_10000930; scaffold693 WUBlastX LINE_RTE-BovB 10491 10583 37 + . . scaffold1408 GLEAN mRNA 3606 4085 0.650712 + . ID=CGI_10000933; scaffold1408 WUBlastX LINE_RTE-X 3606 4085 22 - . . C32984 GLEAN mRNA 5881 6078 1 - . ID=CGI_10000975; C32984 WUBlastX LINE_RTE-X 5881 6078 46 + . . scaffold33036 GLEAN mRNA 5154 5209 0.76238 + . ID=CGI_10000985; scaffold33036 TRF Tandem_Repeat 5154 5209 112 + . . scaffold33036 GLEAN mRNA 11582 11676 0.76238 + . ID=CGI_10000985; scaffold33036 WUBlastX DNA_TcMar-Marin 11582 11740 44 + . . scaffold33036 GLEAN mRNA 11477 11676 0.76238 + . ID=CGI_10000985; scaffold33036 WUBlastX DNA_TcMar-Marin 11477 11740 32 + . . scaffold33082 GLEAN mRNA 6330 6572 0.584166 + . ID=CGI_10000988; scaffold33082 WUBlastX LINE_RTE-X 6330 6572 130 - . . scaffold33082 GLEAN mRNA 7483 7776 0.584166 + . ID=CGI_10000988; scaffold33082 WUBlastX LINE_CR1-L2 7483 7776 65 - . . scaffold33082 GLEAN mRNA 7465 8112 0.584166 + . ID=CGI_10000988; scaffold33082 WUBlastX LINE_CR1 7465 8112 40 - . . scaffold33082 GLEAN mRNA 6605 7423 0.584166 + . ID=CGI_10000988; scaffold33082 WUBlastX LINE_RTE-X 6605 7423 493 - . . scaffold33082 GLEAN mRNA 6219 6572 0.584166 + . ID=CGI_10000988; scaffold33082 WUBlastX LINE_RTE-X 6219 6572 85 - . . scaffold33082 GLEAN mRNA 7447 7728 0.584166 + . ID=CGI_10000988; scaffold33082 WUBlastX LINE_RTE-X 7447 7728 162 - . . C33148 GLEAN mRNA 10045 10938 0.999994 - . ID=CGI_10001003; C33148 WUBlastX DNA_hAT 10045 10938 68 - . . scaffold33242 GLEAN mRNA 2211 2242 0.998658 - . ID=CGI_10001015; scaffold33242 TRF Tandem_Repeat 2211 2242 64 + . . scaffold36 GLEAN mRNA 5546 6976 0.614104 + . ID=CGI_10001028; scaffold36 WUBlastX LTR_Gypsy 5546 6976 408 + . . scaffold36 GLEAN mRNA 7095 7286 0.614104 + . ID=CGI_10001028; scaffold36 WUBlastX DNA_NOF 7095 7286 47 + . . scaffold36 GLEAN mRNA 3719 5191 0.614104 + . ID=CGI_10001028; scaffold36 WUBlastX LTR_Gypsy 3719 5191 1108 + . . scaffold36 GLEAN mRNA 3743 6757 0.614104 + . ID=CGI_10001028; scaffold36 WUBlastX LTR_Gypsy 3743 6757 796 + . . scaffold36 GLEAN mRNA 2924 3160 0.614104 + . ID=CGI_10001028; scaffold36 WUBlastX LTR_Gypsy 2924 3160 49 + . . scaffold36 GLEAN mRNA 2870 3133 0.614104 + . ID=CGI_10001028; scaffold36 WUBlastX LTR_Gypsy 2870 3133 42 + . . scaffold36 GLEAN mRNA 7161 7292 0.614104 + . ID=CGI_10001028; scaffold36 WUBlastX LTR_Pao 7161 7292 50 + . . scaffold36 GLEAN mRNA 2969 3130 0.614104 + . ID=CGI_10001028; scaffold36 WUBlastX LTR_Gypsy 2969 3130 61 + . . scaffold36 GLEAN mRNA 2996 5128 0.614104 + . ID=CGI_10001028; scaffold36 WUBlastX LTR_Gypsy 2996 5128 1016 + . . scaffold36 GLEAN mRNA 2519 2527 0.614104 + . ID=CGI_10001028; scaffold36 WUBlastX LTR_ERV1 2159 2527 59 + . . C33308 GLEAN mRNA 2612 2637 0.99967 + . ID=CGI_10001040; C33308 TRF Tandem_Repeat 2612 2637 52 + . . scaffold33352 GLEAN mRNA 5356 5397 0.989803 + . ID=CGI_10001052; scaffold33352 TRF Tandem_Repeat 5356 5397 84 + . . C33368 GLEAN mRNA 7372 7908 0.564757 + . ID=CGI_10001057; C33368 WUBlastX DNA_Kolobok-Hyd 7372 7908 44 + . . C33368 GLEAN mRNA 7390 7734 0.564757 + . ID=CGI_10001057; C33368 WUBlastX DNA_Kolobok-Hyd 7390 7734 70 + . . scaffold33462 GLEAN mRNA 7182 7217 0.999949 + . ID=CGI_10001068; scaffold33462 TRF Tandem_Repeat 7182 7217 63 + . . scaffold33466 GLEAN mRNA 7326 7511 0.999896 - . ID=CGI_10001069; scaffold33466 WUBlastX LINE_CR1 7326 7511 28 + . . scaffold511 GLEAN mRNA 10257 10298 0.998821 + . ID=CGI_10001110; scaffold511 TRF Tandem_Repeat 10257 10298 84 + . . C33654 GLEAN mRNA 10157 10190 0.999996 + . ID=CGI_10001111; C33654 TRF Tandem_Repeat 10157 10190 68 + . . C33654 GLEAN mRNA 11885 12190 0.999996 + . ID=CGI_10001111; C33654 WUBlastX LINE_RTE-X 11885 12190 66 + . . C33654 GLEAN mRNA 11840 12361 0.999996 + . ID=CGI_10001111; C33654 WUBlastX LINE_RTE-X 11840 12361 26 + . . C33654 GLEAN mRNA 12014 12313 0.999996 + . ID=CGI_10001111; C33654 WUBlastX LINE_RTE-X 12014 12313 68 + . . C33658 GLEAN mRNA 11681 12196 0.499831 - . ID=CGI_10001113; C33658 WUBlastX DNA_Sola 11681 12196 91 + . . C33658 GLEAN mRNA 10830 11423 0.499831 - . ID=CGI_10001113; C33658 WUBlastX DNA_Sola 10830 11423 34 + . . C33658 GLEAN mRNA 10953 11453 0.499831 - . ID=CGI_10001113; C33658 WUBlastX DNA_Sola 10953 11453 59 + . . C33658 GLEAN mRNA 11642 12106 0.499831 - . ID=CGI_10001113; C33658 WUBlastX DNA_Sola 11642 12106 108 + . . C33658 GLEAN mRNA 10759 10881 0.499831 - . ID=CGI_10001113; C33658 WUBlastX DNA_Sola 10759 10881 23 + . . C33658 GLEAN mRNA 11145 11531 0.499831 - . ID=CGI_10001113; C33658 WUBlastX DNA_Sola 11145 11531 58 + . . C33664 GLEAN mRNA 10624 11239 0.751732 + . ID=CGI_10001114; C33664 TRF Tandem_Repeat 10624 11239 681 + . . C33664 GLEAN mRNA 10657 11035 0.751732 + . ID=CGI_10001114; C33664 TRF Tandem_Repeat 10657 11035 302 + . . C33664 GLEAN mRNA 11053 11216 0.751732 + . ID=CGI_10001114; C33664 TRF Tandem_Repeat 11053 11216 98 + . . scaffold33704 GLEAN mRNA 9816 10508 0.999833 + . ID=CGI_10001119; scaffold33704 WUBlastX LTR_DIRS 9783 10508 579 + . . scaffold33704 GLEAN mRNA 10507 10806 0.999833 + . ID=CGI_10001119; scaffold33704 WUBlastX LTR_DIRS 10507 10806 236 + . . C33708 GLEAN mRNA 8557 8589 0.727981 - . ID=CGI_10001120; C33708 TRF Tandem_Repeat 8557 8589 66 + . . C33708 GLEAN mRNA 9783 9818 0.727981 - . ID=CGI_10001120; C33708 TRF Tandem_Repeat 9783 9818 54 + . . scaffold33724 GLEAN mRNA 13745 13903 0.969602 + . ID=CGI_10001124; scaffold33724 WUBlastX DNA_Harbinger 13745 13903 66 + . . scaffold1537 GLEAN mRNA 8581 8742 0.999999 + . ID=CGI_10001150; scaffold1537 WUBlastX LINE_Penelope 8581 8742 88 + . . scaffold1537 GLEAN mRNA 8581 8853 0.999999 + . ID=CGI_10001150; scaffold1537 WUBlastX LINE_Penelope 8581 8853 78 + . . scaffold1537 GLEAN mRNA 8454 8597 0.999999 + . ID=CGI_10001150; scaffold1537 WUBlastX LINE_Penelope 8454 8597 20 + . . scaffold1537 GLEAN mRNA 9039 9095 0.999999 + . ID=CGI_10001150; scaffold1537 WUBlastX LINE_Penelope 9039 9095 36 + . . scaffold33832 GLEAN mRNA 12785 13150 0.717777 + . ID=CGI_10001154; scaffold33832 WUBlastX DNA_Harbinger 12758 13150 145 + . . scaffold33832 GLEAN mRNA 14875 14925 0.717777 + . ID=CGI_10001155; scaffold33832 TRF Tandem_Repeat 14875 14925 68 + . . scaffold33832 GLEAN mRNA 15098 15203 0.717777 + . ID=CGI_10001155; scaffold33832 TRF Tandem_Repeat 15098 15203 128 + . . C33864 GLEAN mRNA 7549 7686 0.999834 - . ID=CGI_10001156; C33864 WUBlastX LINE_Jockey 7549 7686 20 - . . scaffold855 GLEAN mRNA 7598 7663 0.999983 + . ID=CGI_10001160; scaffold855 TRF Tandem_Repeat 7598 7663 123 + . . scaffold855 GLEAN mRNA 8890 8928 0.999983 + . ID=CGI_10001160; scaffold855 TRF Tandem_Repeat 8890 8928 69 + . . scaffold855 GLEAN mRNA 2320 3141 0.999983 + . ID=CGI_10001160; scaffold855 WUBlastX DNA_Maverick 2320 3141 74 + . . scaffold855 GLEAN mRNA 3229 3360 0.999983 + . ID=CGI_10001160; scaffold855 WUBlastX DNA_Maverick 3229 3360 50 + . . scaffold855 GLEAN mRNA 2554 3108 0.999983 + . ID=CGI_10001160; scaffold855 WUBlastX DNA_Maverick 2554 3108 103 + . . scaffold855 GLEAN mRNA 13200 13261 0.978042 - . ID=CGI_10001161; scaffold855 WUBlastX LTR_Pao 13200 13688 44 - . . scaffold33922 GLEAN mRNA 6312 7148 0.69447 - . ID=CGI_10001167; scaffold33922 WUBlastX LINE_L2 6312 7148 29 - . . scaffold33980 GLEAN mRNA 2800 3525 0.664854 + . ID=CGI_10001168; scaffold33980 WUBlastX DNA_hAT-Tip100 2800 3525 20 + . . scaffold33980 GLEAN mRNA 10702 11067 0.664854 + . ID=CGI_10001168; scaffold33980 WUBlastX LTR_Ngaro 10702 11067 257 - . . scaffold33980 GLEAN mRNA 2800 2979 0.664854 + . ID=CGI_10001168; scaffold33980 WUBlastX DNA_hAT-Tip100 2800 2979 47 + . . scaffold33980 GLEAN mRNA 9782 10102 0.664854 + . ID=CGI_10001168; scaffold33980 WUBlastX LTR_Gypsy 9782 10102 27 - . . scaffold33980 GLEAN mRNA 3883 4992 0.664854 + . ID=CGI_10001168; scaffold33980 WUBlastX DNA_hAT-Tip100 3883 4992 242 + . . scaffold33980 GLEAN mRNA 3187 3531 0.664854 + . ID=CGI_10001168; scaffold33980 WUBlastX DNA_hAT-Tip100 3187 3531 172 + . . scaffold33980 GLEAN mRNA 3548 3910 0.664854 + . ID=CGI_10001168; scaffold33980 WUBlastX DNA_hAT-Tip100 3548 3910 94 + . . scaffold33980 GLEAN mRNA 9421 9690 0.664854 + . ID=CGI_10001168; scaffold33980 WUBlastX LTR_Ngaro 9421 9690 108 - . . scaffold33980 GLEAN mRNA 9845 10714 0.664854 + . ID=CGI_10001168; scaffold33980 WUBlastX LTR_Ngaro 9845 10714 314 - . . scaffold33980 GLEAN mRNA 7101 7244 0.664854 + . ID=CGI_10001168; scaffold33980 WUBlastX RC_Helitron 7101 7244 44 + . . scaffold33924 GLEAN mRNA 319 549 0.999068 + . ID=CGI_10001172; scaffold33924 WUBlastX DNA_MuDR 319 549 48 + . . scaffold33924 GLEAN mRNA 304 585 0.999068 + . ID=CGI_10001172; scaffold33924 WUBlastX DNA_MuDR 304 585 48 + . . scaffold34016 GLEAN mRNA 4156 4187 0.445355 - . ID=CGI_10001181; scaffold34016 TRF Tandem_Repeat 4156 4187 64 + . . scaffold34016 GLEAN mRNA 3285 3821 0.445355 - . ID=CGI_10001181; scaffold34016 WUBlastX LINE_Penelope 3285 3821 100 + . . scaffold34016 GLEAN mRNA 3294 3695 0.445355 - . ID=CGI_10001181; scaffold34016 WUBlastX LINE_Penelope 3294 3695 117 + . . scaffold1087 GLEAN mRNA 11230 11994 0.544547 + . ID=CGI_10001183; scaffold1087 WUBlastX LTR_Gypsy 11230 11994 265 + . . scaffold1087 GLEAN mRNA 12928 14586 0.544547 + . ID=CGI_10001183; scaffold1087 WUBlastX LTR_Gypsy 12928 14586 679 + . . scaffold1087 GLEAN mRNA 14977 15588 0.544547 + . ID=CGI_10001183; scaffold1087 WUBlastX LTR_Gypsy 14977 15588 529 + . . scaffold1087 GLEAN mRNA 13627 14586 0.544547 + . ID=CGI_10001183; scaffold1087 WUBlastX LTR_Gypsy 13627 14586 747 + . . scaffold1087 GLEAN mRNA 13249 14553 0.544547 + . ID=CGI_10001183; scaffold1087 WUBlastX LTR_Gypsy 13249 14553 696 + . . scaffold1087 GLEAN mRNA 8727 9248 0.544547 + . ID=CGI_10001183; scaffold1087 WUBlastX LINE_CR1 8727 9248 43 - . . scaffold1087 GLEAN mRNA 13765 14775 0.544547 + . ID=CGI_10001183; scaffold1087 WUBlastX LTR_Gypsy 13765 14775 352 + . . scaffold1087 GLEAN mRNA 14788 15588 0.544547 + . ID=CGI_10001183; scaffold1087 WUBlastX LTR_Gypsy 14788 15588 415 + . . scaffold1087 GLEAN mRNA 11281 11928 0.544547 + . ID=CGI_10001183; scaffold1087 WUBlastX LTR_Gypsy 11281 11928 267 + . . scaffold1087 GLEAN mRNA 14962 15729 0.544547 + . ID=CGI_10001183; scaffold1087 WUBlastX LTR_Gypsy 14962 15729 376 + . . scaffold34106 GLEAN mRNA 13222 14289 0.504518 - . ID=CGI_10001211; scaffold34106 WUBlastX LTR_DIRS 13222 14289 418 + . . scaffold34106 GLEAN mRNA 11015 11173 0.504518 - . ID=CGI_10001211; scaffold34106 WUBlastX LTR_DIRS 11015 11173 38 + . . scaffold34106 GLEAN mRNA 11323 11448 0.504518 - . ID=CGI_10001211; scaffold34106 WUBlastX LTR_DIRS 11323 11448 29 + . . scaffold34106 GLEAN mRNA 12454 12867 0.504518 - . ID=CGI_10001211; scaffold34106 WUBlastX LTR_DIRS 12454 12867 198 + . . scaffold34106 GLEAN mRNA 11729 12319 0.504518 - . ID=CGI_10001211; scaffold34106 WUBlastX LTR_DIRS 11729 12319 420 + . . scaffold34106 GLEAN mRNA 12869 13531 0.504518 - . ID=CGI_10001211; scaffold34106 WUBlastX LTR_DIRS 12869 13531 412 + . . scaffold34106 GLEAN mRNA 13417 14337 0.504518 - . ID=CGI_10001211; scaffold34106 WUBlastX LTR_DIRS 13417 14337 485 + . . scaffold34106 GLEAN mRNA 11290 11325 0.504518 - . ID=CGI_10001211; scaffold34106 WUBlastX LTR_Gypsy 11290 11325 29 + . . scaffold34106 GLEAN mRNA 12219 12440 0.504518 - . ID=CGI_10001211; scaffold34106 WUBlastX LTR_DIRS 12219 12440 157 + . . scaffold34106 GLEAN mRNA 11648 12115 0.504518 - . ID=CGI_10001211; scaffold34106 WUBlastX LTR_Gypsy 11648 12115 71 + . . C34110 GLEAN mRNA 8742 8786 0.431065 - . ID=CGI_10001212; C34110 TRF Tandem_Repeat 8742 8786 90 + . . C34110 GLEAN mRNA 12603 12776 0.431065 - . ID=CGI_10001212; C34110 WUBlastX DNA_Kolobok-IS4 12603 12776 44 + . . C34110 GLEAN mRNA 13670 14296 0.431065 - . ID=CGI_10001212; C34110 WUBlastX DNA_IS4EU 13670 14296 208 - . . C34110 GLEAN mRNA 13137 13328 0.431065 - . ID=CGI_10001212; C34110 WUBlastX DNA_IS4EU 13137 13328 55 + . . C34110 GLEAN mRNA 12150 12776 0.431065 - . ID=CGI_10001212; C34110 WUBlastX DNA_IS4EU 12150 12776 32 + . . C34110 GLEAN mRNA 12772 13209 0.431065 - . ID=CGI_10001212; C34110 WUBlastX DNA_IS4EU 12772 13209 174 + . . C34110 GLEAN mRNA 12772 13140 0.431065 - . ID=CGI_10001212; C34110 WUBlastX DNA_IS4EU 12772 13140 181 + . . C34110 GLEAN mRNA 13655 14392 0.431065 - . ID=CGI_10001212; C34110 WUBlastX DNA_IS4EU 13655 14392 134 - . . C34110 GLEAN mRNA 11168 11380 0.431065 - . ID=CGI_10001212; C34110 WUBlastX DNA_P 11168 11380 44 + . . C34110 GLEAN mRNA 13670 14869 0.431065 - . ID=CGI_10001212; C34110 WUBlastX DNA_IS4EU 13670 14869 95 - . . scaffold34144 GLEAN mRNA 1054 1131 0.995722 - . ID=CGI_10001218; scaffold34144 WUBlastX DNA_Maverick 754 1131 50 - . . scaffold34202 GLEAN mRNA 9773 9949 1 - . ID=CGI_10001227; scaffold34202 WUBlastX LINE_RTE-X 9773 9949 49 + . . scaffold34202 GLEAN mRNA 9785 9916 1 - . ID=CGI_10001227; scaffold34202 WUBlastX LINE_RTE-X 9785 9916 55 + . . C34174 GLEAN mRNA 338 419 1 + . ID=CGI_10001231; C34174 TRF Tandem_Repeat 338 419 110 + . . C34174 GLEAN mRNA 1701 1856 0.544712 - . ID=CGI_10001232; C34174 WUBlastX LTR_Ngaro 1701 1856 45 + . . C34174 GLEAN mRNA 1834 3309 0.544712 - . ID=CGI_10001232; C34174 WUBlastX LTR_Ngaro 1834 3309 906 + . . C34174 GLEAN mRNA 3294 4232 0.544712 - . ID=CGI_10001232; C34174 WUBlastX LTR_Ngaro 3294 4232 321 + . . C34174 GLEAN mRNA 1191 1241 0.544712 - . ID=CGI_10001232; C34174 WUBlastX LTR_Gypsy 1191 1241 22 + . . C34174 GLEAN mRNA 1252 1449 0.544712 - . ID=CGI_10001232; C34174 WUBlastX LTR_Ngaro 1252 1449 79 + . . C34200 GLEAN mRNA 11527 11574 0.89017 + . ID=CGI_10001236; C34200 TRF Tandem_Repeat 11527 11574 87 + . . scaffold1140 GLEAN mRNA 11544 11675 0.943975 - . ID=CGI_10001241; scaffold1140 WUBlastX DNA_TcMar-Fot1 11505 11675 49 + . . scaffold34244 GLEAN mRNA 1952 2788 0.716367 - . ID=CGI_10001253; scaffold34244 TRF Tandem_Repeat 1885 2788 1069 + . . scaffold34244 GLEAN mRNA 3917 4182 0.716367 - . ID=CGI_10001253; scaffold34244 TRF Tandem_Repeat 3917 4182 363 + . . scaffold34244 GLEAN mRNA 8058 8444 0.716367 - . ID=CGI_10001253; scaffold34244 TRF Tandem_Repeat 8058 8444 460 + . . scaffold34244 GLEAN mRNA 10309 10349 0.716367 - . ID=CGI_10001253; scaffold34244 TRF Tandem_Repeat 10309 10349 55 + . . scaffold34244 GLEAN mRNA 10312 10356 0.716367 - . ID=CGI_10001253; scaffold34244 TRF Tandem_Repeat 10312 10356 72 + . . scaffold34244 GLEAN mRNA 15632 15718 0.716367 - . ID=CGI_10001253; scaffold34244 TRF Tandem_Repeat 15632 15718 50 + . . scaffold34244 GLEAN mRNA 15632 15718 0.716367 - . ID=CGI_10001253; scaffold34244 TRF Tandem_Repeat 15632 15718 57 + . . scaffold34282 GLEAN mRNA 4344 4403 1 - . ID=CGI_10001256; scaffold34282 TRF Tandem_Repeat 4344 4403 99 + . . scaffold34282 GLEAN mRNA 9506 9572 1 - . ID=CGI_10001256; scaffold34282 TRF Tandem_Repeat 9506 9572 82 + . . scaffold34282 GLEAN mRNA 10157 10206 1 - . ID=CGI_10001256; scaffold34282 TRF Tandem_Repeat 10157 10206 64 + . . scaffold34282 GLEAN mRNA 14267 14347 1 - . ID=CGI_10001256; scaffold34282 WUBlastX LINE_Rex-Babar 14267 14347 21 - . . scaffold34282 GLEAN mRNA 8283 8987 1 - . ID=CGI_10001256; scaffold34282 WUBlastX LINE_RTE-X 8283 8987 333 - . . scaffold34282 GLEAN mRNA 8999 9484 1 - . ID=CGI_10001256; scaffold34282 WUBlastX LINE_RTE-X 8999 9484 314 - . . scaffold34282 GLEAN mRNA 14291 14380 1 - . ID=CGI_10001256; scaffold34282 WUBlastX LINE_L2 14291 14380 22 - . . scaffold34282 GLEAN mRNA 7973 8038 1 - . ID=CGI_10001256; scaffold34282 WUBlastX LINE_L1 7973 8038 23 - . . scaffold34282 GLEAN mRNA 8005 8271 1 - . ID=CGI_10001256; scaffold34282 WUBlastX LINE_RTE-X 8005 8271 130 - . . C34256 GLEAN mRNA 9999 10334 0.999999 + . ID=CGI_10001257; C34256 WUBlastX DNA_Kolobok 9999 10334 118 + . . C34256 GLEAN mRNA 10014 10295 0.999999 + . ID=CGI_10001257; C34256 WUBlastX DNA_Kolobok 10014 10295 130 + . . C34256 GLEAN mRNA 10416 10673 1 + . ID=CGI_10001258; C34256 WUBlastX DNA_Kolobok 10359 10673 89 + . . C34256 GLEAN mRNA 10416 10697 1 + . ID=CGI_10001258; C34256 WUBlastX DNA_Kolobok 10407 10697 151 + . . C34256 GLEAN mRNA 10842 11066 1 + . ID=CGI_10001258; C34256 WUBlastX DNA_Kolobok 10842 11066 36 + . . C34256 GLEAN mRNA 11007 11147 1 + . ID=CGI_10001258; C34256 WUBlastX DNA_Kolobok 11007 11147 37 + . . scaffold34302 GLEAN mRNA 13321 13455 0.696945 + . ID=CGI_10001259; scaffold34302 WUBlastX DNA_IS4EU 13321 13455 32 + . . scaffold34302 GLEAN mRNA 12411 12845 0.696945 + . ID=CGI_10001259; scaffold34302 WUBlastX DNA_IS4EU 12411 12845 36 + . . C34270 GLEAN mRNA 7870 8055 0.990126 - . ID=CGI_10001262; C34270 WUBlastX DNA_hAT-Blackja 7870 8055 30 + . . C34270 GLEAN mRNA 8183 8503 0.990126 - . ID=CGI_10001262; C34270 WUBlastX DNA_hAT-Blackja 8183 8503 55 + . . C34270 GLEAN mRNA 8147 8533 0.990126 - . ID=CGI_10001262; C34270 WUBlastX DNA_hAT-Blackja 8147 8533 52 + . . scaffold1401 GLEAN mRNA 2067 2104 0.997038 - . ID=CGI_10001278; scaffold1401 TRF Tandem_Repeat 2067 2104 67 + . . scaffold1401 GLEAN mRNA 2920 2945 0.997038 - . ID=CGI_10001278; scaffold1401 TRF Tandem_Repeat 2920 2945 52 + . . scaffold1401 GLEAN mRNA 5468 6031 0.997038 - . ID=CGI_10001278; scaffold1401 WUBlastX LINE_RTE-X 5468 6031 47 - . . scaffold1401 GLEAN mRNA 4430 4639 0.997038 - . ID=CGI_10001278; scaffold1401 WUBlastX LINE_RTE-X 4430 4639 38 - . . scaffold1401 GLEAN mRNA 3211 4437 0.997038 - . ID=CGI_10001278; scaffold1401 WUBlastX LINE_RTE-X 3211 4437 616 - . . scaffold1401 GLEAN mRNA 4653 5426 0.997038 - . ID=CGI_10001278; scaffold1401 WUBlastX LINE_RTE-X 4653 5426 148 - . . scaffold1401 GLEAN mRNA 6296 6619 0.997038 - . ID=CGI_10001278; scaffold1401 WUBlastX LINE_L2 6296 6634 59 - . . scaffold1401 GLEAN mRNA 6338 6619 0.997038 - . ID=CGI_10001278; scaffold1401 WUBlastX LINE_L2 6338 6622 84 - . . scaffold1401 GLEAN mRNA 5408 5554 0.997038 - . ID=CGI_10001278; scaffold1401 WUBlastX LINE_I 5408 5554 22 - . . scaffold1401 GLEAN mRNA 4183 4497 0.997038 - . ID=CGI_10001278; scaffold1401 WUBlastX LINE_RTE-BovB 4183 4497 54 - . . scaffold1401 GLEAN mRNA 2960 3214 0.997038 - . ID=CGI_10001278; scaffold1401 WUBlastX LINE_RTE-X 2960 3214 55 - . . scaffold1675 GLEAN mRNA 7606 7665 0.679204 - . ID=CGI_10001288; scaffold1675 TRF Tandem_Repeat 7606 7665 84 + . . scaffold1675 GLEAN mRNA 9187 9219 0.679204 - . ID=CGI_10001288; scaffold1675 TRF Tandem_Repeat 9187 9219 66 + . . scaffold1675 GLEAN mRNA 9344 9400 0.679204 - . ID=CGI_10001288; scaffold1675 TRF Tandem_Repeat 9344 9400 114 + . . scaffold1675 GLEAN mRNA 11081 11191 0.679204 - . ID=CGI_10001288; scaffold1675 WUBlastX LTR_Gypsy 11081 11191 26 - . . scaffold1675 GLEAN mRNA 10382 10864 0.679204 - . ID=CGI_10001288; scaffold1675 WUBlastX LTR_DIRS 10382 10864 58 - . . scaffold1675 GLEAN mRNA 10126 10383 0.679204 - . ID=CGI_10001288; scaffold1675 WUBlastX LTR_DIRS 10126 10383 63 - . . scaffold1675 GLEAN mRNA 10391 10768 0.679204 - . ID=CGI_10001288; scaffold1675 WUBlastX LTR_DIRS 10391 10768 194 - . . C34436 GLEAN mRNA 8265 8492 0.999934 + . ID=CGI_10001295; C34436 WUBlastX DNA_Sola 8265 8492 55 + . . C34546 GLEAN mRNA 6043 6752 0.791633 - . ID=CGI_10001308; C34546 TRF Tandem_Repeat 6043 6752 982 + . . C34546 GLEAN mRNA 11460 11502 0.791633 - . ID=CGI_10001308; C34546 TRF Tandem_Repeat 11460 11502 54 + . . C34546 GLEAN mRNA 7209 7655 0.791633 - . ID=CGI_10001308; C34546 WUBlastX DNA_Zator 7209 7655 147 - . . scaffold34572 GLEAN mRNA 16138 17151 0.999909 - . ID=CGI_10001316; scaffold34572 WUBlastX DNA_TcMar-Tc1 16138 17151 406 - . . scaffold34594 GLEAN mRNA 7912 8160 0.992512 + . ID=CGI_10001317; scaffold34594 TRF Tandem_Repeat 7912 8160 301 + . . scaffold34594 GLEAN mRNA 12312 12341 0.992512 + . ID=CGI_10001317; scaffold34594 TRF Tandem_Repeat 12312 12341 51 + . . scaffold34594 GLEAN mRNA 13524 13608 0.992512 + . ID=CGI_10001317; scaffold34594 TRF Tandem_Repeat 13524 13608 61 + . . scaffold34594 GLEAN mRNA 15902 15968 0.992512 + . ID=CGI_10001317; scaffold34594 TRF Tandem_Repeat 15902 15968 134 + . . scaffold34594 GLEAN mRNA 6663 7262 0.992512 + . ID=CGI_10001317; scaffold34594 WUBlastX LINE_L2 6663 7262 80 - . . scaffold34594 GLEAN mRNA 6113 6667 0.992512 + . ID=CGI_10001317; scaffold34594 WUBlastX LINE_L2 6113 6667 186 - . . scaffold34594 GLEAN mRNA 6678 7181 0.992512 + . ID=CGI_10001317; scaffold34594 WUBlastX LINE_L2 6678 7181 273 - . . scaffold34596 GLEAN mRNA 3040 4112 0.650923 - . ID=CGI_10001323; scaffold34596 TRF Tandem_Repeat 3040 4112 964 + . . scaffold34596 GLEAN mRNA 8359 8462 0.650923 - . ID=CGI_10001323; scaffold34596 TRF Tandem_Repeat 8359 8462 70 + . . scaffold34596 GLEAN mRNA 11814 11880 0.650923 - . ID=CGI_10001323; scaffold34596 TRF Tandem_Repeat 11814 11880 71 + . . scaffold34596 GLEAN mRNA 14427 14551 0.650923 - . ID=CGI_10001323; scaffold34596 TRF Tandem_Repeat 14427 14551 139 + . . scaffold34596 GLEAN mRNA 6662 6757 0.650923 - . ID=CGI_10001323; scaffold34596 WUBlastX DNA_TcMar-Tc1 6662 6757 29 + . . scaffold34596 GLEAN mRNA 6852 7226 0.650923 - . ID=CGI_10001323; scaffold34596 WUBlastX DNA_TcMar-Tc1 6852 7226 108 + . . scaffold34596 GLEAN mRNA 6921 7226 0.650923 - . ID=CGI_10001323; scaffold34596 WUBlastX DNA_TcMar-Tc1 6921 7226 186 + . . scaffold34596 GLEAN mRNA 3040 4112 0.999994 + . ID=CGI_10001324; scaffold34596 TRF Tandem_Repeat 3040 4112 964 + . . scaffold34596 GLEAN mRNA 6662 6742 0.999994 + . ID=CGI_10001324; scaffold34596 WUBlastX DNA_TcMar-Tc1 6662 6757 29 + . . scaffold1659 GLEAN mRNA 5103 5157 0.650917 + . ID=CGI_10001326; scaffold1659 TRF Tandem_Repeat 5103 5157 101 + . . scaffold1659 GLEAN mRNA 6299 6351 0.650917 + . ID=CGI_10001326; scaffold1659 TRF Tandem_Repeat 6299 6351 97 + . . scaffold1659 GLEAN mRNA 13810 13876 0.650917 + . ID=CGI_10001326; scaffold1659 TRF Tandem_Repeat 13810 13876 80 + . . scaffold1659 GLEAN mRNA 16213 16249 0.650917 + . ID=CGI_10001326; scaffold1659 TRF Tandem_Repeat 16213 16249 74 + . . scaffold1659 GLEAN mRNA 6608 6754 0.650917 + . ID=CGI_10001326; scaffold1659 WUBlastX DNA_Harbinger 6608 6754 24 + . . scaffold1659 GLEAN mRNA 6877 7077 0.650917 + . ID=CGI_10001326; scaffold1659 WUBlastX DNA_Harbinger 6877 7077 90 + . . scaffold1659 GLEAN mRNA 6904 7071 0.650917 + . ID=CGI_10001326; scaffold1659 WUBlastX DNA_Harbinger 6904 7071 103 + . . scaffold1194 GLEAN mRNA 3386 3466 0.999661 - . ID=CGI_10001327; scaffold1194 WUBlastX LINE_R1 3386 3466 23 - . . scaffold1194 GLEAN mRNA 3293 3478 0.999661 - . ID=CGI_10001327; scaffold1194 WUBlastX LINE_I 3293 3886 23 - . . C34622 GLEAN mRNA 5100 5273 0.557561 + . ID=CGI_10001328; C34622 WUBlastX DNA_Kolobok-IS4 4848 5273 57 + . . scaffold34732 GLEAN mRNA 13638 13746 1 - . ID=CGI_10001335; scaffold34732 TRF Tandem_Repeat 13638 13746 92 + . . scaffold34732 GLEAN mRNA 16245 16373 1 - . ID=CGI_10001335; scaffold34732 WUBlastX LINE_L1 16245 16373 54 + . . scaffold34732 GLEAN mRNA 18141 18289 1 - . ID=CGI_10001335; scaffold34732 TRF Tandem_Repeat 18141 18289 104 + . . scaffold34732 GLEAN mRNA 16352 16564 1 - . ID=CGI_10001335; scaffold34732 WUBlastX LINE_L1-Tx1 16352 16564 47 + . . scaffold34732 GLEAN mRNA 16367 16708 1 - . ID=CGI_10001335; scaffold34732 WUBlastX LINE_L1-Tx1 16367 16708 31 + . . scaffold34732 GLEAN mRNA 16104 16385 1 - . ID=CGI_10001335; scaffold34732 WUBlastX LINE_L1-Tx1 16104 16385 47 + . . C34726 GLEAN mRNA 9983 10384 0.93708 - . ID=CGI_10001353; C34726 WUBlastX DNA_Maverick 9983 10384 229 + . . C34726 GLEAN mRNA 9908 10402 0.93708 - . ID=CGI_10001353; C34726 WUBlastX DNA_Maverick 9908 10402 42 + . . scaffold1429 GLEAN mRNA 3714 3752 0.989698 - . ID=CGI_10001354; scaffold1429 TRF Tandem_Repeat 3714 3752 51 + . . scaffold1429 GLEAN mRNA 15455 15862 0.727726 + . ID=CGI_10001355; scaffold1429 WUBlastX DNA_Kolobok-IS4 15455 15862 27 + . . scaffold1429 GLEAN mRNA 14565 15194 0.727726 + . ID=CGI_10001355; scaffold1429 WUBlastX DNA_IS4EU 14565 15194 234 - . . scaffold1429 GLEAN mRNA 17269 17514 0.727726 + . ID=CGI_10001355; scaffold1429 WUBlastX DNA_IS4EU 17269 17514 57 - . . scaffold1429 GLEAN mRNA 15775 16470 0.727726 + . ID=CGI_10001355; scaffold1429 WUBlastX DNA_IS4EU 15775 16470 329 + . . scaffold34694 GLEAN mRNA 11077 11200 0.990975 + . ID=CGI_10001356; scaffold34694 TRF Tandem_Repeat 11077 11200 221 + . . C34856 GLEAN mRNA 6167 6204 0.998639 + . ID=CGI_10001362; C34856 TRF Tandem_Repeat 6167 6204 58 + . . C34856 GLEAN mRNA 9214 9450 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 9214 9450 124 + . . C34856 GLEAN mRNA 9109 9402 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 9109 9402 129 + . . C34856 GLEAN mRNA 7920 8885 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 7920 8885 469 - . . C34856 GLEAN mRNA 8860 9027 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 8860 9027 207 - . . C34856 GLEAN mRNA 8836 9372 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy-Cigr 8836 9372 42 + . . C34856 GLEAN mRNA 6317 7141 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LINE_L1-Tx1 6317 7141 42 - . . C34856 GLEAN mRNA 6488 7117 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LINE_L1-Tx1 6488 7117 80 - . . C34856 GLEAN mRNA 9539 10372 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 9539 10372 186 + . . C34856 GLEAN mRNA 7723 7962 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 7723 7962 53 - . . C34856 GLEAN mRNA 9229 9402 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 9229 9402 151 + . . C34856 GLEAN mRNA 9387 9521 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 9387 9521 106 + . . C34856 GLEAN mRNA 9524 10219 0.998639 + . ID=CGI_10001362; C34856 WUBlastX LTR_Gypsy 9524 10219 594 + . . scaffold34942 GLEAN mRNA 7656 7737 0.738571 - . ID=CGI_10001379; scaffold34942 TRF Tandem_Repeat 7656 7737 146 + . . scaffold34942 GLEAN mRNA 10817 10957 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_Kolobok 10817 10957 38 + . . scaffold34942 GLEAN mRNA 14840 15160 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_hAT-Tip100 14840 15160 75 - . . scaffold34942 GLEAN mRNA 14903 15160 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_hAT-Tip100 14903 15160 89 - . . scaffold34942 GLEAN mRNA 11334 11483 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_Kolobok 11334 11483 96 - . . scaffold34942 GLEAN mRNA 11627 11788 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_Kolobok 11627 11788 73 - . . scaffold34942 GLEAN mRNA 11895 12086 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_Kolobok 11895 12086 64 - . . scaffold34942 GLEAN mRNA 11862 12092 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_Kolobok 11862 12092 50 - . . scaffold34942 GLEAN mRNA 10169 10333 0.738571 - . ID=CGI_10001379; scaffold34942 WUBlastX DNA_Kolobok 10169 10333 21 + . . scaffold34942 GLEAN mRNA 10817 10957 1 + . ID=CGI_10001380; scaffold34942 WUBlastX DNA_Kolobok 10817 10957 38 + . . scaffold34942 GLEAN mRNA 10169 10333 1 + . ID=CGI_10001380; scaffold34942 WUBlastX DNA_Kolobok 10169 10333 21 + . . scaffold35014 GLEAN mRNA 3090 3286 0.999998 + . ID=CGI_10001387; scaffold35014 TRF Tandem_Repeat 3090 3286 109 + . . scaffold35014 GLEAN mRNA 3169 3320 0.999998 + . ID=CGI_10001387; scaffold35014 TRF Tandem_Repeat 3169 3320 58 + . . scaffold35014 GLEAN mRNA 7333 7455 0.702383 + . ID=CGI_10001388; scaffold35014 TRF Tandem_Repeat 7333 7455 228 + . . scaffold35014 GLEAN mRNA 13970 14110 0.996281 + . ID=CGI_10001389; scaffold35014 WUBlastX DNA_PiggyBac 13970 14110 65 + . . scaffold35014 GLEAN mRNA 13162 13533 0.996281 + . ID=CGI_10001389; scaffold35014 WUBlastX DNA_PiggyBac 13162 13533 80 + . . scaffold35014 GLEAN mRNA 15972 16160 0.996281 + . ID=CGI_10001389; scaffold35014 WUBlastX DNA_PiggyBac 15972 16160 83 + . . scaffold35014 GLEAN mRNA 14617 14799 0.996281 + . ID=CGI_10001389; scaffold35014 WUBlastX DNA_PiggyBac 14617 14799 77 + . . scaffold35014 GLEAN mRNA 15391 15504 0.996281 + . ID=CGI_10001389; scaffold35014 WUBlastX DNA_PiggyBac 15391 15504 27 + . . scaffold35014 GLEAN mRNA 15939 16082 0.996281 + . ID=CGI_10001389; scaffold35014 WUBlastX DNA_PiggyBac 15939 16082 36 + . . scaffold35014 GLEAN mRNA 15397 15465 0.996281 + . ID=CGI_10001389; scaffold35014 WUBlastX DNA_PiggyBac 15397 15465 48 + . . scaffold35014 GLEAN mRNA 14617 14832 0.996281 + . ID=CGI_10001389; scaffold35014 WUBlastX DNA_PiggyBac 14617 14832 55 + . . scaffold35014 GLEAN mRNA 16241 16519 0.996281 + . ID=CGI_10001389; scaffold35014 WUBlastX DNA_PiggyBac 16241 16519 113 + . . scaffold35004 GLEAN mRNA 20135 20323 1 + . ID=CGI_10001394; scaffold35004 WUBlastX LINE_RTE-X 20135 20323 82 - . . scaffold35004 GLEAN mRNA 20174 20329 1 + . ID=CGI_10001394; scaffold35004 WUBlastX LINE_RTE-X 20174 20329 98 - . . scaffold35004 GLEAN mRNA 20171 20371 1 + . ID=CGI_10001394; scaffold35004 WUBlastX LINE_RTE-X 20171 20371 43 - . . scaffold1335 GLEAN mRNA 2406 2678 0.65089 + . ID=CGI_10001395; scaffold1335 TRF Tandem_Repeat 2406 2678 261 + . . scaffold1335 GLEAN mRNA 2406 2678 0.65089 + . ID=CGI_10001395; scaffold1335 TRF Tandem_Repeat 2406 2678 262 + . . scaffold1335 GLEAN mRNA 2406 2678 0.65089 + . ID=CGI_10001395; scaffold1335 TRF Tandem_Repeat 2406 2678 280 + . . scaffold1335 GLEAN mRNA 10255 10379 0.65089 + . ID=CGI_10001395; scaffold1335 TRF Tandem_Repeat 10255 10379 196 + . . scaffold1335 GLEAN mRNA 12438 12554 0.65089 + . ID=CGI_10001395; scaffold1335 WUBlastX LINE_Penelope 12438 12554 32 - . . scaffold1335 GLEAN mRNA 12674 13180 0.65089 + . ID=CGI_10001395; scaffold1335 WUBlastX LINE_Penelope 12674 13180 121 - . . scaffold1335 GLEAN mRNA 13183 13659 0.65089 + . ID=CGI_10001395; scaffold1335 WUBlastX LINE_Penelope 13183 13659 202 - . . scaffold1335 GLEAN mRNA 12557 13180 0.65089 + . ID=CGI_10001395; scaffold1335 WUBlastX LINE_Penelope 12557 13180 96 - . . scaffold1335 GLEAN mRNA 14866 15423 0.65089 + . ID=CGI_10001395; scaffold1335 WUBlastX LINE_Penelope 14866 15423 149 - . . scaffold1335 GLEAN mRNA 14980 15543 0.65089 + . ID=CGI_10001395; scaffold1335 WUBlastX LINE_Penelope 14980 15543 75 - . . scaffold1335 GLEAN mRNA 12758 13204 0.65089 + . ID=CGI_10001395; scaffold1335 WUBlastX LINE_Penelope 12758 13204 141 - . . C35006 GLEAN mRNA 3135 3173 0.999998 - . ID=CGI_10001396; C35006 TRF Tandem_Repeat 3135 3173 78 + . . C35006 GLEAN mRNA 4965 5010 0.999998 - . ID=CGI_10001396; C35006 TRF Tandem_Repeat 4965 5010 92 + . . C35006 GLEAN mRNA 2385 2642 0.999998 - . ID=CGI_10001396; C35006 WUBlastX DNA_IS4EU 2385 2642 61 - . . C35006 GLEAN mRNA 2106 2204 0.999998 - . ID=CGI_10001396; C35006 WUBlastX DNA_IS4EU 2106 2204 29 - . . C35042 GLEAN mRNA 2956 3000 0.391528 + . ID=CGI_10001403; C35042 TRF Tandem_Repeat 2956 3000 90 + . . C35042 GLEAN mRNA 3756 3782 0.391528 + . ID=CGI_10001403; C35042 TRF Tandem_Repeat 3756 3782 54 + . . C35042 GLEAN mRNA 8180 8412 0.391528 + . ID=CGI_10001403; C35042 TRF Tandem_Repeat 8180 8412 355 + . . C35042 GLEAN mRNA 8183 8406 0.391528 + . ID=CGI_10001403; C35042 TRF Tandem_Repeat 8183 8406 368 + . . C35042 GLEAN mRNA 8647 8685 0.391528 + . ID=CGI_10001403; C35042 TRF Tandem_Repeat 8647 8685 51 + . . C35042 GLEAN mRNA 13731 13823 0.391528 + . ID=CGI_10001403; C35042 WUBlastX LINE_CR1-L2 13731 13823 63 - . . C35042 GLEAN mRNA 12693 13556 0.391528 + . ID=CGI_10001403; C35042 WUBlastX LINE_RTE-X 12693 13556 206 + . . C35042 GLEAN mRNA 13737 13847 0.391528 + . ID=CGI_10001403; C35042 WUBlastX LINE_CR1-L2 13737 13847 55 - . . C35042 GLEAN mRNA 12364 12729 0.391528 + . ID=CGI_10001403; C35042 WUBlastX LINE_CR1-L2 12364 12729 58 - . . C35042 GLEAN mRNA 9420 10523 0.391528 + . ID=CGI_10001403; C35042 WUBlastX LINE_RTE-X 9420 10523 262 - . . scaffold1340 GLEAN mRNA 4669 6294 1 - . ID=CGI_10001405; scaffold1340 WUBlastX DNA_hAT 4669 6294 404 - . . scaffold1340 GLEAN mRNA 6678 6809 1 - . ID=CGI_10001405; scaffold1340 WUBlastX DNA_hAT 6678 6809 27 - . . scaffold1669 GLEAN mRNA 9502 9792 0.999673 - . ID=CGI_10001412; scaffold1669 WUBlastX DNA_Kolobok 9502 9792 111 + . . scaffold1669 GLEAN mRNA 9876 9923 0.999673 - . ID=CGI_10001412; scaffold1669 WUBlastX DNA_Kolobok 9876 9923 40 + . . C35068 GLEAN mRNA 10160 10334 0.995001 + . ID=CGI_10001414; C35068 TRF Tandem_Repeat 10160 10334 97 + . . C35068 GLEAN mRNA 4704 4988 0.995001 + . ID=CGI_10001414; C35068 WUBlastX DNA_hAT-Tip100 4704 4988 40 + . . C35068 GLEAN mRNA 7386 7673 0.995001 + . ID=CGI_10001414; C35068 WUBlastX DNA_hAT-Tip100 7386 7673 76 + . . C35068 GLEAN mRNA 5680 6423 0.995001 + . ID=CGI_10001414; C35068 WUBlastX DNA_hAT-Tip100 5680 6423 428 + . . C35068 GLEAN mRNA 7296 7610 0.995001 + . ID=CGI_10001414; C35068 WUBlastX DNA_hAT-Tip100 7296 7610 187 + . . C35068 GLEAN mRNA 13095 13280 0.995001 + . ID=CGI_10001414; C35068 WUBlastX DNA_Harbinger 13095 13280 78 + . . scaffold1281 GLEAN mRNA 3938 4031 0.999114 - . ID=CGI_10001419; scaffold1281 WUBlastX LINE_RTE-BovB 3938 4135 43 - . . scaffold1281 GLEAN mRNA 7381 7566 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_Gypsy 7381 7566 34 + . . scaffold1281 GLEAN mRNA 8724 9113 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 8724 9113 195 + . . scaffold1281 GLEAN mRNA 12597 12875 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 12597 12875 193 - . . scaffold1281 GLEAN mRNA 8053 8259 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 8053 8259 108 + . . scaffold1281 GLEAN mRNA 10090 10386 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 10090 10386 194 + . . scaffold1281 GLEAN mRNA 7932 8060 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 7932 8060 79 + . . scaffold1281 GLEAN mRNA 8243 8944 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 8243 8944 394 + . . scaffold1281 GLEAN mRNA 9807 10085 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 9807 10085 193 + . . scaffold1281 GLEAN mRNA 8994 9158 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 8994 9158 66 + . . scaffold1281 GLEAN mRNA 10416 10940 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 10416 10940 214 + . . scaffold1281 GLEAN mRNA 11742 12266 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 11742 12266 214 - . . scaffold1281 GLEAN mRNA 12296 12592 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_DIRS 12296 12592 203 - . . scaffold1281 GLEAN mRNA 18579 18619 0.72874 + . ID=CGI_10001420; scaffold1281 TRF Tandem_Repeat 18579 18619 82 + . . scaffold35162 GLEAN mRNA 16670 16719 0.996194 - . ID=CGI_10001426; scaffold35162 TRF Tandem_Repeat 16670 16719 75 + . . scaffold35162 GLEAN mRNA 19709 20329 0.996194 - . ID=CGI_10001426; scaffold35162 WUBlastX DNA_Crypton 19709 20329 62 - . . scaffold35162 GLEAN mRNA 16160 16456 0.996194 - . ID=CGI_10001426; scaffold35162 WUBlastX DNA_Crypton 16025 16456 79 - . . C35168 GLEAN mRNA 5877 6770 0.999999 - . ID=CGI_10001430; C35168 TRF Tandem_Repeat 5877 6770 1255 + . . C35168 GLEAN mRNA 8159 8224 0.999999 - . ID=CGI_10001430; C35168 TRF Tandem_Repeat 8159 8224 80 + . . C35168 GLEAN mRNA 8159 8217 0.999999 - . ID=CGI_10001430; C35168 TRF Tandem_Repeat 8159 8217 73 + . . C35168 GLEAN mRNA 12919 12968 0.999999 - . ID=CGI_10001430; C35168 TRF Tandem_Repeat 12919 12968 93 + . . C35172 GLEAN mRNA 1741 3876 0.907032 + . ID=CGI_10001431; C35172 WUBlastX DNA_En-Spm 1741 3876 340 + . . C35172 GLEAN mRNA 2254 3498 0.907032 + . ID=CGI_10001431; C35172 WUBlastX DNA_En-Spm 2254 3498 417 + . . C35172 GLEAN mRNA 1555 3507 0.907032 + . ID=CGI_10001431; C35172 WUBlastX DNA_En-Spm 1555 3507 411 + . . scaffold35180 GLEAN mRNA 11299 11345 0.992496 - . ID=CGI_10001433; scaffold35180 TRF Tandem_Repeat 11299 11345 94 + . . scaffold35180 GLEAN mRNA 9682 10221 0.992496 - . ID=CGI_10001433; scaffold35180 WUBlastX LINE_RTE-X 9682 10221 81 + . . scaffold35180 GLEAN mRNA 10423 10476 0.992496 - . ID=CGI_10001433; scaffold35180 WUBlastX LINE_RTE-X 10423 10476 21 + . . scaffold35180 GLEAN mRNA 9682 10011 0.992496 - . ID=CGI_10001433; scaffold35180 WUBlastX LINE_RTE-X 9682 10011 98 + . . scaffold35180 GLEAN mRNA 17169 18098 0.992496 - . ID=CGI_10001433; scaffold35180 WUBlastX LINE_L1-Tx1 17169 18098 150 - . . scaffold35180 GLEAN mRNA 18335 19555 0.992496 - . ID=CGI_10001433; scaffold35180 WUBlastX LINE_L1-Tx1 18335 19555 334 - . . scaffold35180 GLEAN mRNA 19558 20895 0.992496 - . ID=CGI_10001433; scaffold35180 WUBlastX LINE_L1-Tx1 19558 20895 519 - . . scaffold35180 GLEAN mRNA 18136 18543 0.992496 - . ID=CGI_10001433; scaffold35180 WUBlastX LINE_L1-Tx1 18136 18543 146 - . . scaffold35180 GLEAN mRNA 18542 19594 0.992496 - . ID=CGI_10001433; scaffold35180 WUBlastX LINE_L1-Tx1 18542 19594 593 - . . scaffold35266 GLEAN mRNA 14577 14641 1 + . ID=CGI_10001434; scaffold35266 TRF Tandem_Repeat 14577 14641 130 + . . scaffold35266 GLEAN mRNA 9418 9720 1 + . ID=CGI_10001434; scaffold35266 WUBlastX LTR_Copia 9418 9720 105 + . . scaffold35266 GLEAN mRNA 11224 11424 1 + . ID=CGI_10001434; scaffold35266 WUBlastX LTR_Copia 11224 11424 88 - . . scaffold35266 GLEAN mRNA 11769 12287 1 + . ID=CGI_10001434; scaffold35266 WUBlastX LTR_Copia 11769 12287 25 - . . scaffold35266 GLEAN mRNA 11224 12036 1 + . ID=CGI_10001434; scaffold35266 WUBlastX LTR_Copia 11224 12036 71 - . . scaffold35230 GLEAN mRNA 7243 7376 0.695547 + . ID=CGI_10001437; scaffold35230 TRF Tandem_Repeat 7243 7376 85 + . . scaffold35230 GLEAN mRNA 7633 7725 0.695547 + . ID=CGI_10001437; scaffold35230 TRF Tandem_Repeat 7633 7725 84 + . . scaffold35230 GLEAN mRNA 11648 11903 0.695547 + . ID=CGI_10001437; scaffold35230 TRF Tandem_Repeat 11648 11903 431 + . . C35260 GLEAN mRNA 5676 5752 0.999337 + . ID=CGI_10001443; C35260 TRF Tandem_Repeat 5676 5752 140 + . . C35260 GLEAN mRNA 6581 7121 0.999337 + . ID=CGI_10001443; C35260 TRF Tandem_Repeat 6581 7121 317 + . . C35260 GLEAN mRNA 6746 7108 0.999337 + . ID=CGI_10001443; C35260 TRF Tandem_Repeat 6746 7108 356 + . . C35260 GLEAN mRNA 7373 7406 0.999337 + . ID=CGI_10001443; C35260 TRF Tandem_Repeat 7373 7406 68 + . . C35260 GLEAN mRNA 13589 13653 0.999337 + . ID=CGI_10001443; C35260 TRF Tandem_Repeat 13589 13653 121 + . . C35260 GLEAN mRNA 13807 13885 0.999337 + . ID=CGI_10001443; C35260 TRF Tandem_Repeat 13807 13885 158 + . . C35260 GLEAN mRNA 15122 15168 0.999337 + . ID=CGI_10001443; C35260 TRF Tandem_Repeat 15122 15168 94 + . . scaffold35286 GLEAN mRNA 1429 1505 1 + . ID=CGI_10001449; scaffold35286 TRF Tandem_Repeat 1429 1505 50 + . . scaffold35286 GLEAN mRNA 15930 16073 1 + . ID=CGI_10001451; scaffold35286 TRF Tandem_Repeat 15930 16073 288 + . . scaffold35286 GLEAN mRNA 7502 7795 1 + . ID=CGI_10001451; scaffold35286 WUBlastX LINE_L2 7502 7795 96 + . . scaffold35286 GLEAN mRNA 6299 7750 1 + . ID=CGI_10001451; scaffold35286 WUBlastX LINE_Proto2 6299 7750 158 + . . scaffold35286 GLEAN mRNA 16392 16449 1 + . ID=CGI_10001451; scaffold35286 TRF Tandem_Repeat 16392 16449 75 + . . C35282 GLEAN mRNA 2009 2557 0.999228 + . ID=CGI_10001456; C35282 WUBlastX LTR_Gypsy 2009 2557 92 + . . C35282 GLEAN mRNA 1406 1957 0.999228 + . ID=CGI_10001456; C35282 WUBlastX LTR_Gypsy 1406 1957 123 + . . C35282 GLEAN mRNA 2030 2407 0.999228 + . ID=CGI_10001456; C35282 WUBlastX LTR_Gypsy 2030 2407 121 + . . C35282 GLEAN mRNA 1961 2359 0.999228 + . ID=CGI_10001456; C35282 WUBlastX LTR_Gypsy 1961 2359 107 + . . C35282 GLEAN mRNA 7474 7522 0.639937 + . ID=CGI_10001457; C35282 TRF Tandem_Repeat 7474 7522 98 + . . scaffold35272 GLEAN mRNA 3423 3929 0.999572 + . ID=CGI_10001464; scaffold35272 WUBlastX LTR_Gypsy 3423 3929 22 + . . scaffold35332 GLEAN mRNA 3781 4032 0.999372 - . ID=CGI_10001469; scaffold35332 WUBlastX LINE_CR1 3781 4047 85 - . . scaffold35332 GLEAN mRNA 12114 12136 1 + . ID=CGI_10001470; scaffold35332 TRF Tandem_Repeat 11584 12136 874 + . . scaffold1184 GLEAN mRNA 21824 21877 0.999547 + . ID=CGI_10001476; scaffold1184 TRF Tandem_Repeat 21824 21877 108 + . . scaffold35346 GLEAN mRNA 7568 8125 0.901079 - . ID=CGI_10001477; scaffold35346 WUBlastX LTR_Gypsy 7568 8125 345 + . . scaffold35346 GLEAN mRNA 8115 8270 0.901079 - . ID=CGI_10001477; scaffold35346 WUBlastX LTR_Gypsy 8115 8270 111 + . . scaffold196 GLEAN mRNA 10417 11272 0.676836 + . ID=CGI_10001478; scaffold196 TRF Tandem_Repeat 10417 11272 993 + . . scaffold196 GLEAN mRNA 12270 12369 0.676836 + . ID=CGI_10001478; scaffold196 TRF Tandem_Repeat 12270 12369 57 + . . scaffold35336 GLEAN mRNA 2592 3376 0.999999 - . ID=CGI_10001479; scaffold35336 TRF Tandem_Repeat 2592 3376 974 + . . scaffold35336 GLEAN mRNA 4417 4448 0.999999 - . ID=CGI_10001479; scaffold35336 TRF Tandem_Repeat 4417 4448 64 + . . scaffold35336 GLEAN mRNA 5616 7898 0.999999 - . ID=CGI_10001479; scaffold35336 WUBlastX DNA_En-Spm 5616 7898 1261 + . . scaffold35336 GLEAN mRNA 8734 9189 0.999999 - . ID=CGI_10001479; scaffold35336 WUBlastX DNA_IS4EU 8734 9189 119 - . . scaffold35336 GLEAN mRNA 8734 9048 0.999999 - . ID=CGI_10001479; scaffold35336 WUBlastX DNA_IS4EU 8734 9048 152 - . . scaffold35336 GLEAN mRNA 6372 7898 0.999785 + . ID=CGI_10001480; scaffold35336 WUBlastX DNA_En-Spm 5616 7898 1261 + . . scaffold1418 GLEAN mRNA 8052 8105 0.999675 + . ID=CGI_10001497; scaffold1418 TRF Tandem_Repeat 8052 8105 108 + . . scaffold1418 GLEAN mRNA 8743 8835 0.999675 + . ID=CGI_10001497; scaffold1418 TRF Tandem_Repeat 8743 8835 150 + . . scaffold1418 GLEAN mRNA 14005 14370 0.999965 + . ID=CGI_10001498; scaffold1418 WUBlastX DNA_Kolobok-IS4 14005 14370 39 + . . scaffold1418 GLEAN mRNA 14704 14841 0.999965 + . ID=CGI_10001498; scaffold1418 WUBlastX DNA_Kolobok-IS4 14704 14841 78 + . . scaffold35406 GLEAN mRNA 2908 3004 0.688101 - . ID=CGI_10001499; scaffold35406 TRF Tandem_Repeat 2908 3004 142 + . . scaffold35406 GLEAN mRNA 9833 10459 0.688101 - . ID=CGI_10001499; scaffold35406 WUBlastX LTR_Gypsy 9833 10459 58 - . . scaffold35406 GLEAN mRNA 9965 10636 0.688101 - . ID=CGI_10001499; scaffold35406 WUBlastX LTR_Gypsy 9965 10636 112 - . . scaffold35406 GLEAN mRNA 13297 13353 0.688101 - . ID=CGI_10001499; scaffold35406 WUBlastX RC_Helitron 13297 13353 24 + . . scaffold35406 GLEAN mRNA 13388 14164 0.688101 - . ID=CGI_10001499; scaffold35406 WUBlastX RC_Helitron 13388 14164 129 + . . scaffold35406 GLEAN mRNA 9065 9145 0.688101 - . ID=CGI_10001499; scaffold35406 WUBlastX LTR_Gypsy-Cigr 9065 9145 25 - . . scaffold35406 GLEAN mRNA 14003 14485 0.688101 - . ID=CGI_10001499; scaffold35406 WUBlastX RC_Helitron 14003 14485 144 + . . scaffold35406 GLEAN mRNA 16740 17912 0.688101 - . ID=CGI_10001499; scaffold35406 WUBlastX DNA_P 16740 17912 239 - . . scaffold35406 GLEAN mRNA 17929 18162 0.688101 - . ID=CGI_10001499; scaffold35406 WUBlastX DNA_P 17929 18162 54 - . . scaffold35406 GLEAN mRNA 16155 16388 0.688101 - . ID=CGI_10001499; scaffold35406 WUBlastX LINE_Jockey 16155 16388 43 + . . scaffold35446 GLEAN mRNA 17885 18118 0.682042 + . ID=CGI_10001510; scaffold35446 WUBlastX LTR_Gypsy 17885 18118 76 - . . scaffold35446 GLEAN mRNA 18228 18668 0.682042 + . ID=CGI_10001510; scaffold35446 WUBlastX LTR_Gypsy 18228 18668 266 - . . scaffold35446 GLEAN mRNA 18141 18650 0.682042 + . ID=CGI_10001510; scaffold35446 WUBlastX LTR_ERV1 18141 18650 57 - . . scaffold35446 GLEAN mRNA 18267 18758 0.682042 + . ID=CGI_10001510; scaffold35446 WUBlastX LTR_Gypsy 18267 18758 97 - . . scaffold35446 GLEAN mRNA 17655 17729 0.682042 + . ID=CGI_10001510; scaffold35446 WUBlastX LTR_Gypsy 17655 17729 24 - . . scaffold35438 GLEAN mRNA 4907 4965 0.999028 - . ID=CGI_10001514; scaffold35438 TRF Tandem_Repeat 4907 4965 118 + . . scaffold35438 GLEAN mRNA 15326 15353 0.999028 - . ID=CGI_10001514; scaffold35438 TRF Tandem_Repeat 15326 15353 56 + . . scaffold35438 GLEAN mRNA 9886 10398 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX LINE_L1-Tx1 9886 10398 62 - . . scaffold35438 GLEAN mRNA 13738 14004 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX LINE_L1-Tx1 13738 14004 112 - . . scaffold35438 GLEAN mRNA 11301 11948 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX LINE_L1-Tx1 11301 11948 244 - . . scaffold35438 GLEAN mRNA 12025 12810 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX LINE_L1-Tx1 12025 12810 187 - . . scaffold35438 GLEAN mRNA 9529 10494 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX LINE_L1-Tx1 9529 10494 52 - . . scaffold35438 GLEAN mRNA 14442 14678 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX DNA_MuDR 14442 14678 78 - . . scaffold35438 GLEAN mRNA 11535 12023 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX LINE_L1 11535 12023 46 - . . scaffold35438 GLEAN mRNA 10027 10398 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX LINE_L1-Tx1 10027 10398 62 - . . scaffold35438 GLEAN mRNA 13545 13721 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX LINE_CR1 13545 13721 61 - . . scaffold35438 GLEAN mRNA 10403 11299 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX LINE_L1 10403 11299 322 - . . scaffold35438 GLEAN mRNA 14851 15249 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX DNA_MuDR 14851 15249 47 - . . scaffold35438 GLEAN mRNA 9293 9460 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX LINE_L1 9293 9460 20 - . . scaffold35438 GLEAN mRNA 17362 17398 0.999028 - . ID=CGI_10001514; scaffold35438 TRF Tandem_Repeat 17362 17398 74 + . . scaffold35438 GLEAN mRNA 22332 22372 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX LTR_Gypsy 22332 22679 51 + . . scaffold35438 GLEAN mRNA 22653 23060 0.996819 + . ID=CGI_10001515; scaffold35438 WUBlastX LTR_Pao 22458 23060 50 + . . scaffold35438 GLEAN mRNA 22653 22679 0.996819 + . ID=CGI_10001515; scaffold35438 WUBlastX LTR_Gypsy 22332 22679 51 + . . scaffold35432 GLEAN mRNA 2400 2450 0.544675 + . ID=CGI_10001516; scaffold35432 TRF Tandem_Repeat 2400 2450 102 + . . scaffold35138 GLEAN mRNA 23323 23490 0.999675 + . ID=CGI_10001519; scaffold35138 WUBlastX DNA_Sola 23323 23490 65 + . . scaffold35486 GLEAN mRNA 15426 16019 0.999998 - . ID=CGI_10001528; scaffold35486 WUBlastX LINE_RTE-X 15426 16019 110 - . . scaffold35486 GLEAN mRNA 16281 16514 0.999998 - . ID=CGI_10001528; scaffold35486 WUBlastX LINE_CR1-L2 16281 16514 37 - . . scaffold35478 GLEAN mRNA 9057 9092 0.687089 - . ID=CGI_10001535; scaffold35478 TRF Tandem_Repeat 9057 9092 72 + . . scaffold35478 GLEAN mRNA 9653 10273 0.687089 - . ID=CGI_10001535; scaffold35478 WUBlastX DNA_Crypton 9653 10273 56 + . . scaffold35478 GLEAN mRNA 10646 10987 0.687089 - . ID=CGI_10001535; scaffold35478 WUBlastX DNA_Crypton 10646 10987 69 + . . scaffold1428 GLEAN mRNA 23510 23943 0.648527 + . ID=CGI_10001542; scaffold1428 TRF Tandem_Repeat 23510 23943 139 + . . scaffold729 GLEAN mRNA 11155 11202 0.999992 - . ID=CGI_10001545; scaffold729 TRF Tandem_Repeat 11155 11202 52 + . . scaffold729 GLEAN mRNA 11476 11543 0.999992 - . ID=CGI_10001545; scaffold729 TRF Tandem_Repeat 11476 11543 82 + . . C35532 GLEAN mRNA 15036 15524 0.999947 - . ID=CGI_10001547; C35532 WUBlastX LTR_Ngaro 15036 15524 34 - . . C35532 GLEAN mRNA 13260 14828 0.999947 - . ID=CGI_10001547; C35532 WUBlastX LTR_Ngaro 13260 14828 960 - . . C35532 GLEAN mRNA 12355 13257 0.999947 - . ID=CGI_10001547; C35532 WUBlastX LTR_Ngaro 12355 13257 381 - . . C35532 GLEAN mRNA 15177 15908 0.999947 - . ID=CGI_10001547; C35532 WUBlastX LTR_Ngaro 15177 15908 178 - . . C35532 GLEAN mRNA 17574 17609 0.999947 - . ID=CGI_10001547; C35532 TRF Tandem_Repeat 17574 17609 72 + . . scaffold35444 GLEAN mRNA 1987 2109 0.999654 - . ID=CGI_10001555; scaffold35444 TRF Tandem_Repeat 1987 2109 176 + . . scaffold35444 GLEAN mRNA 5335 5371 0.999654 - . ID=CGI_10001555; scaffold35444 TRF Tandem_Repeat 5335 5371 56 + . . scaffold35444 GLEAN mRNA 5770 5931 0.999654 - . ID=CGI_10001555; scaffold35444 WUBlastX LTR_Gypsy-Cigr 5770 5931 57 - . . scaffold35444 GLEAN mRNA 5940 6185 0.999654 - . ID=CGI_10001555; scaffold35444 WUBlastX LTR_Gypsy 5940 6185 53 - . . scaffold35444 GLEAN mRNA 5925 6095 0.999654 - . ID=CGI_10001555; scaffold35444 WUBlastX LTR_Gypsy-Cigr 5925 6095 63 - . . scaffold35444 GLEAN mRNA 6125 6250 0.999654 - . ID=CGI_10001555; scaffold35444 WUBlastX LTR_Gypsy 6125 6250 40 - . . scaffold35444 GLEAN mRNA 5725 5934 0.999654 - . ID=CGI_10001555; scaffold35444 WUBlastX LTR_Gypsy 5725 5934 41 - . . scaffold35444 GLEAN mRNA 8265 8342 0.674039 - . ID=CGI_10001556; scaffold35444 TRF Tandem_Repeat 8265 8342 147 + . . scaffold35444 GLEAN mRNA 9718 9770 0.674039 - . ID=CGI_10001556; scaffold35444 TRF Tandem_Repeat 9718 9770 52 + . . scaffold35538 GLEAN mRNA 14483 14869 0.828916 + . ID=CGI_10001559; scaffold35538 TRF Tandem_Repeat 14483 14869 489 + . . scaffold35538 GLEAN mRNA 21118 21330 0.828916 + . ID=CGI_10001559; scaffold35538 WUBlastX LINE_RTE-X 21118 21330 54 - . . scaffold35538 GLEAN mRNA 20932 21357 0.828916 + . ID=CGI_10001559; scaffold35538 WUBlastX LINE_RTE-X 20932 21357 20 - . . scaffold1544 GLEAN mRNA 2991 3100 0.873026 + . ID=CGI_10001560; scaffold1544 TRF Tandem_Repeat 2991 3100 96 + . . scaffold1544 GLEAN mRNA 2991 3081 0.873026 + . ID=CGI_10001560; scaffold1544 TRF Tandem_Repeat 2991 3081 98 + . . scaffold35640 GLEAN mRNA 1611 2025 0.997206 - . ID=CGI_10001574; scaffold35640 TRF Tandem_Repeat 1611 2025 618 + . . scaffold841 GLEAN mRNA 16064 16150 0.544469 - . ID=CGI_10001583; scaffold841 TRF Tandem_Repeat 16064 16150 59 + . . scaffold841 GLEAN mRNA 20038 20087 0.544469 - . ID=CGI_10001583; scaffold841 TRF Tandem_Repeat 20038 20087 100 + . . scaffold35712 GLEAN mRNA 8360 8398 0.47659 + . ID=CGI_10001589; scaffold35712 TRF Tandem_Repeat 8360 8398 78 + . . scaffold35712 GLEAN mRNA 6532 7506 0.47659 + . ID=CGI_10001589; scaffold35712 WUBlastX LINE_RTE-X 6532 7506 278 + . . scaffold35712 GLEAN mRNA 6080 6178 0.47659 + . ID=CGI_10001589; scaffold35712 WUBlastX LINE_Proto2 6080 6178 21 + . . scaffold35712 GLEAN mRNA 5642 6160 0.47659 + . ID=CGI_10001589; scaffold35712 WUBlastX LINE_RTE-X 5642 6160 99 + . . scaffold35712 GLEAN mRNA 6243 6764 0.47659 + . ID=CGI_10001589; scaffold35712 WUBlastX LINE_RTE-X 6243 6764 187 + . . scaffold35712 GLEAN mRNA 7765 7827 0.47659 + . ID=CGI_10001589; scaffold35712 WUBlastX LINE_Jockey 7765 7827 22 + . . scaffold35712 GLEAN mRNA 5777 6160 0.47659 + . ID=CGI_10001589; scaffold35712 WUBlastX LINE_RTE-X 5777 6160 144 + . . scaffold35712 GLEAN mRNA 6754 7506 0.47659 + . ID=CGI_10001589; scaffold35712 WUBlastX LINE_RTE-X 6754 7506 358 + . . scaffold35712 GLEAN mRNA 6754 7686 0.47659 + . ID=CGI_10001589; scaffold35712 WUBlastX LINE_RTE-X 6754 7686 315 + . . scaffold35712 GLEAN mRNA 8249 8287 0.47659 + . ID=CGI_10001589; scaffold35712 WUBlastX LINE_L1 8249 8287 22 + . . scaffold35712 GLEAN mRNA 22289 22341 0.47659 + . ID=CGI_10001589; scaffold35712 TRF Tandem_Repeat 22289 22341 97 + . . scaffold35712 GLEAN mRNA 22289 22344 0.47659 + . ID=CGI_10001589; scaffold35712 TRF Tandem_Repeat 22289 22344 67 + . . scaffold1731 GLEAN mRNA 23003 23110 1 - . ID=CGI_10001591; scaffold1731 WUBlastX LINE_RTE-BovB 23003 23110 61 + . . scaffold316 GLEAN mRNA 4022 4240 0.301379 - . ID=CGI_10001602; scaffold316 TRF Tandem_Repeat 4022 4240 438 + . . scaffold316 GLEAN mRNA 4238 4285 0.301379 - . ID=CGI_10001602; scaffold316 TRF Tandem_Repeat 4238 4285 96 + . . scaffold316 GLEAN mRNA 4396 4969 0.301379 - . ID=CGI_10001602; scaffold316 TRF Tandem_Repeat 4396 4969 1148 + . . scaffold316 GLEAN mRNA 24402 24471 0.301379 - . ID=CGI_10001602; scaffold316 TRF Tandem_Repeat 24402 24471 140 + . . scaffold316 GLEAN mRNA 24523 24547 0.301379 - . ID=CGI_10001602; scaffold316 TRF Tandem_Repeat 24523 24547 50 + . . scaffold316 GLEAN mRNA 16635 16787 0.301379 - . ID=CGI_10001602; scaffold316 WUBlastX LTR_Gypsy 16635 16787 67 + . . scaffold316 GLEAN mRNA 16781 17017 0.301379 - . ID=CGI_10001602; scaffold316 WUBlastX LTR_Gypsy 16781 17017 76 + . . scaffold316 GLEAN mRNA 16554 16790 0.301379 - . ID=CGI_10001602; scaffold316 WUBlastX LTR_Gypsy 16554 16790 49 + . . scaffold316 GLEAN mRNA 16781 17083 0.301379 - . ID=CGI_10001602; scaffold316 WUBlastX LTR_Gypsy 16781 17083 60 + . . scaffold316 GLEAN mRNA 16599 16802 0.301379 - . ID=CGI_10001602; scaffold316 WUBlastX LTR_Gypsy 16599 16802 66 + . . scaffold316 GLEAN mRNA 16790 17140 0.301379 - . ID=CGI_10001602; scaffold316 WUBlastX LTR_Gypsy 16790 17140 40 + . . scaffold35822 GLEAN mRNA 3264 3371 1 - . ID=CGI_10001612; scaffold35822 TRF Tandem_Repeat 3264 3371 189 + . . scaffold35822 GLEAN mRNA 11711 11803 1 - . ID=CGI_10001612; scaffold35822 TRF Tandem_Repeat 11711 11803 78 + . . scaffold35822 GLEAN mRNA 23437 23563 1 - . ID=CGI_10001614; scaffold35822 TRF Tandem_Repeat 23437 23563 87 + . . scaffold35822 GLEAN mRNA 23692 24537 1 - . ID=CGI_10001614; scaffold35822 WUBlastX LINE_RTE-BovB 23692 24537 636 + . . scaffold764 GLEAN mRNA 24152 24203 0.702385 - . ID=CGI_10001622; scaffold764 TRF Tandem_Repeat 24152 24203 65 + . . scaffold764 GLEAN mRNA 24696 24807 0.702385 - . ID=CGI_10001622; scaffold764 TRF Tandem_Repeat 24696 24807 224 + . . C35840 GLEAN mRNA 1813 2010 0.500738 - . ID=CGI_10001630; C35840 WUBlastX DNA_Harbinger 1813 2010 59 - . . C35840 GLEAN mRNA 712 825 0.500738 - . ID=CGI_10001630; C35840 WUBlastX DNA_Harbinger 712 825 46 - . . C35840 GLEAN mRNA 655 825 0.500738 - . ID=CGI_10001630; C35840 WUBlastX DNA_Harbinger 610 825 32 - . . C35840 GLEAN mRNA 1285 1554 0.500738 - . ID=CGI_10001630; C35840 WUBlastX DNA_Harbinger 1285 1554 194 - . . C35840 GLEAN mRNA 1641 1814 0.500738 - . ID=CGI_10001630; C35840 WUBlastX DNA_Harbinger 1641 1814 76 - . . C35840 GLEAN mRNA 1641 1865 0.500738 - . ID=CGI_10001630; C35840 WUBlastX DNA_Harbinger 1641 1865 66 - . . C35840 GLEAN mRNA 3715 3924 0.500738 - . ID=CGI_10001630; C35840 WUBlastX DNA_Harbinger 3715 3924 29 - . . C35840 GLEAN mRNA 709 846 0.500738 - . ID=CGI_10001630; C35840 WUBlastX DNA_Harbinger 709 846 28 - . . scaffold35866 GLEAN mRNA 14192 14447 0.998342 + . ID=CGI_10001635; scaffold35866 TRF Tandem_Repeat 14192 14447 314 + . . scaffold35866 GLEAN mRNA 15267 15450 0.998342 + . ID=CGI_10001635; scaffold35866 TRF Tandem_Repeat 15267 15450 304 + . . scaffold35866 GLEAN mRNA 15267 15450 0.998342 + . ID=CGI_10001635; scaffold35866 TRF Tandem_Repeat 15267 15450 300 + . . scaffold35866 GLEAN mRNA 16400 16595 0.998342 + . ID=CGI_10001635; scaffold35866 TRF Tandem_Repeat 16400 16595 293 + . . scaffold35866 GLEAN mRNA 16400 16601 0.998342 + . ID=CGI_10001635; scaffold35866 TRF Tandem_Repeat 16400 16601 304 + . . scaffold35854 GLEAN mRNA 5579 5710 1 - . ID=CGI_10001636; scaffold35854 TRF Tandem_Repeat 5579 5710 120 + . . scaffold35884 GLEAN mRNA 22005 22039 0.999993 - . ID=CGI_10001638; scaffold35884 TRF Tandem_Repeat 22005 22039 52 + . . scaffold35884 GLEAN mRNA 22244 22395 0.999993 - . ID=CGI_10001638; scaffold35884 TRF Tandem_Repeat 22244 22395 93 + . . scaffold35884 GLEAN mRNA 22264 22398 0.999993 - . ID=CGI_10001638; scaffold35884 TRF Tandem_Repeat 22264 22398 150 + . . scaffold35884 GLEAN mRNA 27007 27850 0.999993 - . ID=CGI_10001638; scaffold35884 TRF Tandem_Repeat 27007 27850 1283 + . . scaffold35896 GLEAN mRNA 15398 15449 0.497805 - . ID=CGI_10001642; scaffold35896 TRF Tandem_Repeat 15398 15449 61 + . . scaffold35896 GLEAN mRNA 15411 15450 0.497805 - . ID=CGI_10001642; scaffold35896 TRF Tandem_Repeat 15411 15450 64 + . . scaffold35896 GLEAN mRNA 9402 9929 0.497805 - . ID=CGI_10001642; scaffold35896 WUBlastX DNA_TcMar-Tc1 9402 9929 154 + . . scaffold35896 GLEAN mRNA 10072 10335 0.497805 - . ID=CGI_10001642; scaffold35896 WUBlastX DNA_TcMar-Tc1 10072 10335 111 + . . scaffold35896 GLEAN mRNA 9932 10150 0.497805 - . ID=CGI_10001642; scaffold35896 WUBlastX DNA_TcMar-Tc1 9932 10150 94 + . . scaffold35896 GLEAN mRNA 20487 20642 0.497805 - . ID=CGI_10001642; scaffold35896 WUBlastX LINE_RTE-BovB 20487 20642 29 - . . scaffold35896 GLEAN mRNA 26002 26052 0.497805 - . ID=CGI_10001642; scaffold35896 WUBlastX LINE_L1 26002 26052 24 - . . scaffold35896 GLEAN mRNA 25839 26030 0.497805 - . ID=CGI_10001642; scaffold35896 WUBlastX LINE_L2 25839 26030 21 - . . scaffold35902 GLEAN mRNA 7974 8032 0.914048 - . ID=CGI_10001651; scaffold35902 TRF Tandem_Repeat 7974 8032 118 + . . scaffold35902 GLEAN mRNA 27520 28107 0.990718 - . ID=CGI_10001652; scaffold35902 WUBlastX LINE_L1 27520 28107 310 + . . scaffold35902 GLEAN mRNA 27589 28083 0.990718 - . ID=CGI_10001652; scaffold35902 WUBlastX LINE_L1-Tx1 27589 28083 422 + . . C35952 GLEAN mRNA 436 714 0.544487 + . ID=CGI_10001669; C35952 WUBlastX DNA_Sola 436 714 47 + . . C35952 GLEAN mRNA 2451 2720 0.544487 + . ID=CGI_10001669; C35952 WUBlastX LINE_L2 2451 2720 56 + . . C35952 GLEAN mRNA 3484 3567 0.544487 + . ID=CGI_10001669; C35952 WUBlastX LINE_L2 3484 3567 20 + . . C35952 GLEAN mRNA 1577 1981 0.544487 + . ID=CGI_10001669; C35952 WUBlastX DNA_Helitron 1577 1981 154 + . . C35952 GLEAN mRNA 1983 2360 0.544487 + . ID=CGI_10001669; C35952 WUBlastX DNA_Helitron 1983 2360 44 + . . C35952 GLEAN mRNA 3402 3497 0.544487 + . ID=CGI_10001669; C35952 WUBlastX LINE_L2 3402 3497 20 + . . C35952 GLEAN mRNA 1398 1592 0.544487 + . ID=CGI_10001669; C35952 WUBlastX RC_Helitron 1398 1592 66 + . . C35952 GLEAN mRNA 448 651 0.544487 + . ID=CGI_10001669; C35952 WUBlastX DNA_Sola 448 651 69 + . . C35952 GLEAN mRNA 2672 2842 0.544487 + . ID=CGI_10001669; C35952 WUBlastX LINE_L2 2672 2842 36 + . . C35952 GLEAN mRNA 2310 2672 0.544487 + . ID=CGI_10001669; C35952 WUBlastX LINE_L2 2310 2672 52 + . . C35952 GLEAN mRNA 2481 2780 0.544487 + . ID=CGI_10001669; C35952 WUBlastX LINE_L2 2481 2780 45 + . . scaffold35994 GLEAN mRNA 3543 3797 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX DNA_Maverick 3543 3797 20 - . . scaffold35994 GLEAN mRNA 3803 4312 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX DNA_Maverick 3803 4312 26 - . . scaffold35994 GLEAN mRNA 11907 12422 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX DNA_PiggyBac 11907 12422 128 - . . scaffold35994 GLEAN mRNA 12413 12562 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX DNA_PiggyBac 12413 12562 42 - . . scaffold35994 GLEAN mRNA 12559 12915 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX DNA_PiggyBac 12559 12915 248 - . . scaffold35994 GLEAN mRNA 9739 10764 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX LINE_Penelope 9739 10764 116 + . . scaffold35994 GLEAN mRNA 9943 10767 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX LINE_Penelope 9943 10767 326 + . . scaffold35994 GLEAN mRNA 10754 11227 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX LINE_Penelope 10754 11227 224 + . . scaffold35994 GLEAN mRNA 11250 11513 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX LINE_Penelope 11250 11513 158 + . . scaffold35994 GLEAN mRNA 12478 12960 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX DNA_PiggyBac 12478 12960 150 - . . scaffold35994 GLEAN mRNA 11220 11702 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX LINE_Penelope 11220 11702 144 + . . scaffold35994 GLEAN mRNA 23927 24322 0.722015 + . ID=CGI_10001675; scaffold35994 WUBlastX LTR_Gypsy 23927 24322 192 + . . scaffold35994 GLEAN mRNA 23659 23940 0.722015 + . ID=CGI_10001675; scaffold35994 WUBlastX LTR_Gypsy 23659 23940 122 + . . scaffold35994 GLEAN mRNA 22897 23361 0.722015 + . ID=CGI_10001675; scaffold35994 WUBlastX LTR_Pao 22897 23361 140 - . . scaffold35994 GLEAN mRNA 23930 24220 0.722015 + . ID=CGI_10001675; scaffold35994 WUBlastX LTR_Gypsy 23930 24220 197 + . . scaffold35970 GLEAN mRNA 14901 14930 1 + . ID=CGI_10001699; scaffold35970 TRF Tandem_Repeat 14901 14930 60 + . . scaffold35970 GLEAN mRNA 16428 16480 1 + . ID=CGI_10001699; scaffold35970 TRF Tandem_Repeat 16428 16480 106 + . . scaffold35988 GLEAN mRNA 26179 26325 0.999996 - . ID=CGI_10001701; scaffold35988 WUBlastX DNA_Maverick 26179 26325 66 - . . scaffold35960 GLEAN mRNA 7779 8213 0.999984 - . ID=CGI_10001702; scaffold35960 TRF Tandem_Repeat 7779 8213 288 + . . scaffold35960 GLEAN mRNA 8214 8496 0.999984 - . ID=CGI_10001702; scaffold35960 TRF Tandem_Repeat 8214 8496 186 + . . scaffold35960 GLEAN mRNA 11204 11455 0.999984 - . ID=CGI_10001702; scaffold35960 WUBlastX DNA_hAT-Tip100 11204 11455 35 + . . scaffold35960 GLEAN mRNA 9519 9713 0.999984 - . ID=CGI_10001702; scaffold35960 WUBlastX DNA_hAT-Tip100 9519 9713 86 + . . scaffold35960 GLEAN mRNA 11219 11398 0.999984 - . ID=CGI_10001702; scaffold35960 WUBlastX DNA_hAT-Tip100 11219 11398 83 + . . scaffold35974 GLEAN mRNA 29222 29340 0.530503 - . ID=CGI_10001705; scaffold35974 TRF Tandem_Repeat 29222 29340 69 + . . scaffold35974 GLEAN mRNA 29218 29342 0.530503 - . ID=CGI_10001705; scaffold35974 TRF Tandem_Repeat 29218 29342 114 + . . scaffold35986 GLEAN mRNA 12602 12833 0.651135 + . ID=CGI_10001706; scaffold35986 TRF Tandem_Repeat 12602 12833 136 + . . scaffold35986 GLEAN mRNA 12984 13121 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_Gypsy 12984 13121 95 + . . scaffold35986 GLEAN mRNA 13122 13367 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 13122 13367 141 - . . scaffold35986 GLEAN mRNA 13328 13573 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 13328 13573 68 - . . scaffold35986 GLEAN mRNA 13627 13716 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 13627 13716 31 - . . scaffold35986 GLEAN mRNA 14383 14598 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 14383 14598 42 - . . scaffold35986 GLEAN mRNA 14583 15041 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 14583 15041 104 - . . scaffold35986 GLEAN mRNA 14598 15137 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 14598 15137 24 - . . scaffold35986 GLEAN mRNA 15978 16415 0.651135 + . ID=CGI_10001706; scaffold35986 WUBlastX LTR_DIRS 15978 16415 57 - . . scaffold1499 GLEAN mRNA 16179 16221 0.999177 + . ID=CGI_10001715; scaffold1499 TRF Tandem_Repeat 16179 16221 50 + . . C36014 GLEAN mRNA 10994 11030 0.998089 - . ID=CGI_10001735; C36014 TRF Tandem_Repeat 10994 11030 74 + . . C36014 GLEAN mRNA 24398 24432 0.789576 - . ID=CGI_10001737; C36014 TRF Tandem_Repeat 24398 24432 54 + . . scaffold36022 GLEAN mRNA 8979 9419 0.999661 - . ID=CGI_10001740; scaffold36022 WUBlastX LINE_L2 8979 9419 61 - . . scaffold36022 GLEAN mRNA 24492 24632 0.99999 - . ID=CGI_10001741; scaffold36022 WUBlastX LINE_RTE-X 24492 24632 58 + . . C36028 GLEAN mRNA 20052 20110 0.63754 - . ID=CGI_10001743; C36028 TRF Tandem_Repeat 20052 20110 118 + . . C36028 GLEAN mRNA 28465 28848 0.694438 + . ID=CGI_10001744; C36028 WUBlastX LINE_RTE-X 28465 28848 51 + . . C36028 GLEAN mRNA 29041 30036 0.694438 + . ID=CGI_10001744; C36028 WUBlastX LINE_RTE-X 29041 30036 100 + . . scaffold36092 GLEAN mRNA 4151 4191 0.999861 + . ID=CGI_10001746; scaffold36092 TRF Tandem_Repeat 4151 4191 82 + . . scaffold36092 GLEAN mRNA 13104 13570 0.999861 + . ID=CGI_10001746; scaffold36092 TRF Tandem_Repeat 13104 13570 544 + . . scaffold1507 GLEAN mRNA 1161 1191 0.675757 + . ID=CGI_10001767; scaffold1507 TRF Tandem_Repeat 1161 1191 62 + . . scaffold1507 GLEAN mRNA 2071 2106 0.675757 + . ID=CGI_10001767; scaffold1507 TRF Tandem_Repeat 2071 2106 72 + . . scaffold1507 GLEAN mRNA 9652 10781 0.675757 + . ID=CGI_10001767; scaffold1507 TRF Tandem_Repeat 9652 10781 783 + . . scaffold1507 GLEAN mRNA 9681 10269 0.675757 + . ID=CGI_10001767; scaffold1507 TRF Tandem_Repeat 9681 10269 454 + . . scaffold1507 GLEAN mRNA 9652 10781 0.965106 - . ID=CGI_10001768; scaffold1507 TRF Tandem_Repeat 9652 10781 783 + . . scaffold1507 GLEAN mRNA 9681 10269 0.965106 - . ID=CGI_10001768; scaffold1507 TRF Tandem_Repeat 9681 10269 454 + . . scaffold1507 GLEAN mRNA 13515 13787 0.965106 - . ID=CGI_10001768; scaffold1507 WUBlastX LTR_Ngaro 13515 13787 189 + . . scaffold1507 GLEAN mRNA 13898 14131 0.965106 - . ID=CGI_10001768; scaffold1507 WUBlastX LTR_Ngaro 13898 14131 144 + . . scaffold1507 GLEAN mRNA 14107 14325 0.965106 - . ID=CGI_10001768; scaffold1507 WUBlastX LTR_Ngaro 14107 14325 99 + . . scaffold1507 GLEAN mRNA 12947 13423 0.965106 - . ID=CGI_10001768; scaffold1507 WUBlastX LTR_Ngaro 12947 13423 145 + . . scaffold1507 GLEAN mRNA 13353 13787 0.965106 - . ID=CGI_10001768; scaffold1507 WUBlastX LTR_Ngaro 13353 13787 108 + . . scaffold1507 GLEAN mRNA 13521 14015 0.965106 - . ID=CGI_10001768; scaffold1507 WUBlastX LTR_Ngaro 13521 14015 118 + . . scaffold29 GLEAN mRNA 18617 19819 0.937847 - . ID=CGI_10001774; scaffold29 TRF Tandem_Repeat 18617 19819 1618 + . . scaffold572 GLEAN mRNA 13730 13771 0.671543 + . ID=CGI_10001775; scaffold572 TRF Tandem_Repeat 13730 13771 57 + . . scaffold572 GLEAN mRNA 15519 16118 0.671543 + . ID=CGI_10001775; scaffold572 WUBlastX LTR_Gypsy 15519 16118 56 - . . scaffold572 GLEAN mRNA 16785 17587 0.671543 + . ID=CGI_10001775; scaffold572 TRF Tandem_Repeat 16785 17587 779 + . . scaffold572 GLEAN mRNA 16831 17587 0.671543 + . ID=CGI_10001775; scaffold572 TRF Tandem_Repeat 16831 17587 1105 + . . scaffold598 GLEAN mRNA 1349 2302 0.992797 + . ID=CGI_10001778; scaffold598 WUBlastX LTR_Gypsy 1349 2302 41 + . . scaffold598 GLEAN mRNA 1493 3094 0.992797 + . ID=CGI_10001778; scaffold598 WUBlastX LTR_Ngaro 1493 3094 1034 + . . scaffold598 GLEAN mRNA 3064 3966 0.992797 + . ID=CGI_10001778; scaffold598 WUBlastX LTR_Ngaro 3064 3966 416 + . . scaffold598 GLEAN mRNA 4298 4753 0.992797 + . ID=CGI_10001778; scaffold598 WUBlastX LINE_RTE-X 4298 4753 64 + . . scaffold36108 GLEAN mRNA 4248 4281 1 + . ID=CGI_10001790; scaffold36108 TRF Tandem_Repeat 4248 4281 52 + . . scaffold36140 GLEAN mRNA 7200 7255 0.998174 + . ID=CGI_10001795; scaffold36140 TRF Tandem_Repeat 7200 7255 112 + . . scaffold36140 GLEAN mRNA 10497 10558 0.998174 + . ID=CGI_10001795; scaffold36140 TRF Tandem_Repeat 10497 10558 124 + . . scaffold36140 GLEAN mRNA 8933 9388 0.998174 + . ID=CGI_10001795; scaffold36140 WUBlastX LINE_CR1-L2 8933 9388 298 - . . scaffold36140 GLEAN mRNA 10088 10237 0.998174 + . ID=CGI_10001795; scaffold36140 WUBlastX LINE_CR1 10088 10237 32 - . . scaffold36140 GLEAN mRNA 7974 8993 0.998174 + . ID=CGI_10001795; scaffold36140 WUBlastX LINE_L2 7974 8993 546 - . . scaffold36140 GLEAN mRNA 8921 9490 0.998174 + . ID=CGI_10001795; scaffold36140 WUBlastX LINE_CR1 8921 9490 211 - . . scaffold36158 GLEAN mRNA 18432 18671 0.784797 + . ID=CGI_10001808; scaffold36158 WUBlastX LINE_L1-Tx1 18432 18671 37 - . . scaffold36158 GLEAN mRNA 18489 18677 0.784797 + . ID=CGI_10001808; scaffold36158 WUBlastX LINE_L1-Tx1 18489 18677 41 - . . scaffold36190 GLEAN mRNA 7371 7399 1 - . ID=CGI_10001810; scaffold36190 TRF Tandem_Repeat 7371 7399 58 + . . scaffold36190 GLEAN mRNA 7448 7485 1 - . ID=CGI_10001810; scaffold36190 TRF Tandem_Repeat 7448 7485 76 + . . scaffold36190 GLEAN mRNA 20135 20329 1 + . ID=CGI_10001811; scaffold36190 WUBlastX DNA_Crypton 20135 20335 68 - . . scaffold36202 GLEAN mRNA 20512 20757 0.999232 + . ID=CGI_10001812; scaffold36202 WUBlastX LTR_Ngaro 20512 20757 26 - . . scaffold36202 GLEAN mRNA 20871 21449 0.999232 + . ID=CGI_10001812; scaffold36202 WUBlastX LTR_Ngaro 20871 21449 71 - . . scaffold36202 GLEAN mRNA 20566 20757 0.999232 + . ID=CGI_10001812; scaffold36202 WUBlastX LTR_Ngaro 20566 20757 34 - . . scaffold36202 GLEAN mRNA 20871 21314 0.999232 + . ID=CGI_10001812; scaffold36202 WUBlastX LTR_Ngaro 20871 21314 85 - . . scaffold36202 GLEAN mRNA 20747 20965 0.999232 + . ID=CGI_10001812; scaffold36202 WUBlastX LTR_Ngaro 20747 20965 49 - . . C36172 GLEAN mRNA 6944 7353 0.942163 + . ID=CGI_10001813; C36172 TRF Tandem_Repeat 6944 7353 186 + . . C36172 GLEAN mRNA 7001 7259 0.942163 + . ID=CGI_10001813; C36172 TRF Tandem_Repeat 7001 7259 238 + . . C36172 GLEAN mRNA 7001 7259 0.942163 + . ID=CGI_10001813; C36172 TRF Tandem_Repeat 7001 7259 301 + . . C36172 GLEAN mRNA 7690 7890 0.942163 + . ID=CGI_10001813; C36172 TRF Tandem_Repeat 7690 7890 176 + . . C36172 GLEAN mRNA 9221 9245 0.942163 + . ID=CGI_10001813; C36172 TRF Tandem_Repeat 9221 9245 50 + . . C36172 GLEAN mRNA 20241 20307 0.977766 + . ID=CGI_10001814; C36172 TRF Tandem_Repeat 20241 20307 134 + . . C36172 GLEAN mRNA 21132 21227 0.977766 + . ID=CGI_10001814; C36172 TRF Tandem_Repeat 21132 21227 71 + . . scaffold36170 GLEAN mRNA 1289 1318 0.999675 - . ID=CGI_10001816; scaffold36170 TRF Tandem_Repeat 1289 1318 60 + . . scaffold36286 GLEAN mRNA 8801 8888 0.999236 + . ID=CGI_10001838; scaffold36286 TRF Tandem_Repeat 8801 8888 88 + . . scaffold36286 GLEAN mRNA 9931 10064 0.999236 + . ID=CGI_10001838; scaffold36286 TRF Tandem_Repeat 9931 10064 124 + . . scaffold36278 GLEAN mRNA 27490 28791 0.651135 - . ID=CGI_10001848; scaffold36278 TRF Tandem_Repeat 27490 28791 1282 + . . scaffold36278 GLEAN mRNA 29864 30798 0.651135 - . ID=CGI_10001848; scaffold36278 TRF Tandem_Repeat 29864 30798 671 + . . scaffold36278 GLEAN mRNA 30020 30798 0.651135 - . ID=CGI_10001848; scaffold36278 TRF Tandem_Repeat 30020 30798 1215 + . . scaffold36278 GLEAN mRNA 28794 29246 0.651135 - . ID=CGI_10001848; scaffold36278 WUBlastX DNA_PiggyBac 28794 29246 94 - . . scaffold36278 GLEAN mRNA 26785 26895 0.651135 - . ID=CGI_10001848; scaffold36278 WUBlastX DNA_PiggyBac 26785 26895 20 - . . scaffold36278 GLEAN mRNA 26782 26844 0.651135 - . ID=CGI_10001848; scaffold36278 WUBlastX DNA_PiggyBac 26782 26844 41 - . . scaffold36278 GLEAN mRNA 26207 26746 0.651135 - . ID=CGI_10001848; scaffold36278 WUBlastX DNA_PiggyBac 26207 26746 127 - . . scaffold36278 GLEAN mRNA 29290 29520 0.651135 - . ID=CGI_10001848; scaffold36278 WUBlastX DNA_PiggyBac 29290 29520 70 - . . scaffold1779 GLEAN mRNA 26536 26594 0.999221 - . ID=CGI_10001860; scaffold1779 TRF Tandem_Repeat 26536 26594 118 + . . scaffold1779 GLEAN mRNA 27023 27086 0.999221 - . ID=CGI_10001860; scaffold1779 TRF Tandem_Repeat 27023 27086 53 + . . scaffold1779 GLEAN mRNA 25733 26212 0.999221 - . ID=CGI_10001860; scaffold1779 WUBlastX DNA_Harbinger 25733 26212 212 - . . scaffold36342 GLEAN mRNA 31232 31274 1 - . ID=CGI_10001862; scaffold36342 TRF Tandem_Repeat 31232 31274 86 + . . scaffold36336 GLEAN mRNA 10222 10494 0.962769 + . ID=CGI_10001863; scaffold36336 TRF Tandem_Repeat 10222 10494 215 + . . scaffold36336 GLEAN mRNA 10208 10260 0.962769 + . ID=CGI_10001863; scaffold36336 TRF Tandem_Repeat 10208 10260 51 + . . scaffold36336 GLEAN mRNA 15055 15097 0.962769 + . ID=CGI_10001863; scaffold36336 TRF Tandem_Repeat 15055 15097 86 + . . scaffold36336 GLEAN mRNA 20175 20476 0.962769 + . ID=CGI_10001863; scaffold36336 TRF Tandem_Repeat 20175 20476 231 + . . scaffold36336 GLEAN mRNA 20163 20476 0.962769 + . ID=CGI_10001863; scaffold36336 TRF Tandem_Repeat 20163 20476 296 + . . scaffold36336 GLEAN mRNA 23900 25060 0.962769 + . ID=CGI_10001863; scaffold36336 TRF Tandem_Repeat 23900 25060 1801 + . . scaffold1635 GLEAN mRNA 23116 23152 0.621954 - . ID=CGI_10001870; scaffold1635 TRF Tandem_Repeat 23116 23152 74 + . . scaffold36390 GLEAN mRNA 5437 5805 0.999984 + . ID=CGI_10001879; scaffold36390 WUBlastX LTR_Gypsy 5437 5805 86 + . . scaffold36390 GLEAN mRNA 5323 5811 0.999984 + . ID=CGI_10001879; scaffold36390 WUBlastX LTR_Gypsy 5323 5811 78 + . . scaffold36390 GLEAN mRNA 5527 5805 0.999984 + . ID=CGI_10001879; scaffold36390 WUBlastX LTR_Gypsy 5527 5805 90 + . . scaffold36390 GLEAN mRNA 24270 24376 0.999984 + . ID=CGI_10001885; scaffold36390 WUBlastX LTR_Gypsy 24270 24458 23 + . . scaffold36410 GLEAN mRNA 11598 11628 0.354487 - . ID=CGI_10001887; scaffold36410 TRF Tandem_Repeat 11598 11628 62 + . . scaffold36410 GLEAN mRNA 6368 6724 0.354487 - . ID=CGI_10001887; scaffold36410 WUBlastX DNA_Harbinger 6368 6724 147 + . . scaffold36410 GLEAN mRNA 13955 14221 0.354487 - . ID=CGI_10001887; scaffold36410 WUBlastX RC_Helitron 13955 14221 93 + . . scaffold36410 GLEAN mRNA 5596 5775 0.354487 - . ID=CGI_10001887; scaffold36410 WUBlastX DNA_Harbinger 5596 5775 55 + . . scaffold36410 GLEAN mRNA 5617 5808 0.354487 - . ID=CGI_10001887; scaffold36410 WUBlastX DNA_Harbinger 5617 5808 26 + . . scaffold36410 GLEAN mRNA 14880 15173 0.354487 - . ID=CGI_10001887; scaffold36410 WUBlastX RC_Helitron 14880 15173 75 + . . scaffold36410 GLEAN mRNA 17827 18026 0.354487 - . ID=CGI_10001887; scaffold36410 TRF Tandem_Repeat 17827 18026 95 + . . scaffold36420 GLEAN mRNA 28826 29071 0.835531 + . ID=CGI_10001889; scaffold36420 WUBlastX LINE_L2 28826 29071 62 - . . scaffold36462 GLEAN mRNA 5960 6015 0.999855 + . ID=CGI_10001928; scaffold36462 TRF Tandem_Repeat 5960 6015 96 + . . scaffold36462 GLEAN mRNA 24506 24570 0.999351 - . ID=CGI_10001929; scaffold36462 TRF Tandem_Repeat 24506 24570 121 + . . scaffold36462 GLEAN mRNA 20265 20480 0.999351 - . ID=CGI_10001929; scaffold36462 WUBlastX LINE_RTE-X 20265 20480 49 - . . scaffold36462 GLEAN mRNA 20268 20450 0.999351 - . ID=CGI_10001929; scaffold36462 WUBlastX LINE_RTE-X 20268 20450 127 - . . scaffold36462 GLEAN mRNA 20713 20754 0.999351 - . ID=CGI_10001929; scaffold36462 WUBlastX LINE_RTE-X 20713 20754 23 - . . scaffold36462 GLEAN mRNA 19543 20247 0.999351 - . ID=CGI_10001929; scaffold36462 WUBlastX LINE_RTE-X 19543 20247 148 - . . scaffold36462 GLEAN mRNA 33127 33192 1 - . ID=CGI_10001930; scaffold36462 TRF Tandem_Repeat 33127 33192 132 + . . scaffold36398 GLEAN mRNA 8517 8569 0.660768 + . ID=CGI_10001931; scaffold36398 TRF Tandem_Repeat 8517 8569 106 + . . scaffold36398 GLEAN mRNA 9303 9412 0.660768 + . ID=CGI_10001931; scaffold36398 TRF Tandem_Repeat 9303 9412 57 + . . scaffold36398 GLEAN mRNA 9947 9996 0.660768 + . ID=CGI_10001931; scaffold36398 TRF Tandem_Repeat 9947 9996 100 + . . scaffold36398 GLEAN mRNA 17668 17724 0.660768 + . ID=CGI_10001931; scaffold36398 TRF Tandem_Repeat 17668 17724 114 + . . scaffold815 GLEAN mRNA 8896 9258 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 8896 9258 145 + . . scaffold815 GLEAN mRNA 9276 9440 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 9276 9440 111 + . . scaffold815 GLEAN mRNA 9458 9967 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 9458 9967 89 + . . scaffold815 GLEAN mRNA 11395 11589 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 11395 11589 66 + . . scaffold815 GLEAN mRNA 8899 9399 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 8899 9399 116 + . . scaffold815 GLEAN mRNA 11395 11673 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 11395 11673 47 + . . scaffold815 GLEAN mRNA 7793 8050 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 7793 8050 37 + . . scaffold815 GLEAN mRNA 7853 8206 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 7853 8206 75 + . . scaffold815 GLEAN mRNA 9479 9802 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 9479 9802 103 + . . scaffold815 GLEAN mRNA 10487 10561 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_CR1 10487 10561 22 + . . scaffold815 GLEAN mRNA 10632 11174 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 10632 11174 41 + . . scaffold815 GLEAN mRNA 11395 11550 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 11395 11550 90 + . . scaffold815 GLEAN mRNA 10635 11315 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 10635 11315 23 + . . scaffold815 GLEAN mRNA 17894 17942 0.999835 - . ID=CGI_10001932; scaffold815 TRF Tandem_Repeat 17894 17942 98 + . . scaffold815 GLEAN mRNA 18679 18712 0.999835 - . ID=CGI_10001932; scaffold815 TRF Tandem_Repeat 18679 18712 50 + . . scaffold815 GLEAN mRNA 19971 21215 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX DNA_hAT-hATw 19971 21215 420 - . . scaffold36450 GLEAN mRNA 4220 4444 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 4220 4444 52 + . . scaffold36450 GLEAN mRNA 5928 6956 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 5928 6956 342 + . . scaffold36450 GLEAN mRNA 8282 9427 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 8282 9427 505 + . . scaffold36450 GLEAN mRNA 5703 6929 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 5703 6929 278 + . . scaffold36450 GLEAN mRNA 6972 8228 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 6972 8228 176 + . . scaffold36450 GLEAN mRNA 5148 6428 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 5148 6428 63 + . . scaffold36450 GLEAN mRNA 5403 6947 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 5403 6947 200 + . . scaffold36450 GLEAN mRNA 4845 5942 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 4845 5942 31 + . . scaffold36450 GLEAN mRNA 4151 4417 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 4151 4417 37 + . . scaffold36450 GLEAN mRNA 5874 8036 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 5874 8036 239 + . . scaffold36450 GLEAN mRNA 21416 21802 0.503687 - . ID=CGI_10001980; scaffold36450 WUBlastX LINE_CR1-L2 21416 21802 44 - . . scaffold36450 GLEAN mRNA 21056 21697 0.503687 - . ID=CGI_10001980; scaffold36450 WUBlastX LINE_L2 21056 21697 92 - . . scaffold36450 GLEAN mRNA 21836 22435 0.503687 - . ID=CGI_10001980; scaffold36450 WUBlastX LTR_Ngaro 21836 22435 366 + . . scaffold36526 GLEAN mRNA 21483 21950 0.999676 + . ID=CGI_10002008; scaffold36526 WUBlastX LINE_L1 21483 21950 76 - . . scaffold36526 GLEAN mRNA 20526 20948 0.999676 + . ID=CGI_10002008; scaffold36526 WUBlastX LINE_L1-Tx1 20526 20948 45 - . . scaffold36526 GLEAN mRNA 21217 21417 0.999676 + . ID=CGI_10002008; scaffold36526 WUBlastX LINE_L1 21217 21417 73 - . . scaffold36526 GLEAN mRNA 21067 21417 0.999676 + . ID=CGI_10002008; scaffold36526 WUBlastX LINE_L1-Tx1 21067 21417 47 - . . scaffold36526 GLEAN mRNA 21169 21438 0.999676 + . ID=CGI_10002008; scaffold36526 WUBlastX LINE_L1-Tx1 21169 21438 52 - . . scaffold36526 GLEAN mRNA 20604 20948 0.999676 + . ID=CGI_10002008; scaffold36526 WUBlastX LINE_L1-Tx1 20604 20948 53 - . . scaffold36526 GLEAN mRNA 21624 22049 0.999676 + . ID=CGI_10002008; scaffold36526 WUBlastX LINE_L1-Tx1 21624 22049 172 - . . scaffold36572 GLEAN mRNA 9077 9117 0.712459 - . ID=CGI_10002009; scaffold36572 TRF Tandem_Repeat 9077 9117 82 + . . scaffold36598 GLEAN mRNA 11596 11931 0.999993 + . ID=CGI_10002012; scaffold36598 WUBlastX DNA_IS4EU 11596 11931 85 + . . scaffold36598 GLEAN mRNA 12817 13545 0.999993 + . ID=CGI_10002012; scaffold36598 WUBlastX DNA_Kolobok-IS4 12817 13545 130 - . . scaffold36598 GLEAN mRNA 12892 13779 0.999993 + . ID=CGI_10002012; scaffold36598 WUBlastX DNA_IS4EU 12892 13779 61 - . . scaffold36598 GLEAN mRNA 27987 28955 0.99428 - . ID=CGI_10002013; scaffold36598 WUBlastX LTR_Ngaro 27987 28955 157 - . . scaffold36598 GLEAN mRNA 29580 30023 0.99428 - . ID=CGI_10002013; scaffold36598 WUBlastX LTR_Ngaro 29580 30023 163 - . . scaffold36598 GLEAN mRNA 30301 31068 0.99428 - . ID=CGI_10002013; scaffold36598 WUBlastX LTR_Ngaro 30301 31068 379 - . . scaffold36598 GLEAN mRNA 28892 29107 0.99428 - . ID=CGI_10002013; scaffold36598 WUBlastX LTR_Ngaro 28892 29107 112 - . . scaffold36598 GLEAN mRNA 30041 30256 0.99428 - . ID=CGI_10002013; scaffold36598 WUBlastX LTR_Ngaro 30041 30256 149 - . . scaffold36698 GLEAN mRNA 3653 5377 0.999949 - . ID=CGI_10002014; scaffold36698 TRF Tandem_Repeat 3653 5377 2003 + . . scaffold36698 GLEAN mRNA 5562 5600 0.999949 - . ID=CGI_10002014; scaffold36698 TRF Tandem_Repeat 5562 5600 51 + . . scaffold36698 GLEAN mRNA 2444 2623 0.999949 - . ID=CGI_10002014; scaffold36698 WUBlastX DNA_TcMar-Marin 2444 2623 39 - . . scaffold36698 GLEAN mRNA 2417 2635 0.999949 - . ID=CGI_10002014; scaffold36698 WUBlastX DNA_TcMar-Marin 2417 2635 36 - . . scaffold36698 GLEAN mRNA 7923 7989 0.999997 - . ID=CGI_10002015; scaffold36698 TRF Tandem_Repeat 7923 7989 66 + . . scaffold36698 GLEAN mRNA 8111 9239 0.999997 - . ID=CGI_10002015; scaffold36698 TRF Tandem_Repeat 8111 9239 1167 + . . scaffold36698 GLEAN mRNA 8112 9296 0.999997 - . ID=CGI_10002015; scaffold36698 TRF Tandem_Repeat 8112 9296 1088 + . . scaffold36642 GLEAN mRNA 1347 1379 0.999986 + . ID=CGI_10002025; scaffold36642 TRF Tandem_Repeat 1347 1379 57 + . . scaffold36642 GLEAN mRNA 2048 2096 0.999986 + . ID=CGI_10002025; scaffold36642 TRF Tandem_Repeat 2048 2096 55 + . . scaffold36642 GLEAN mRNA 7210 7259 0.999986 + . ID=CGI_10002025; scaffold36642 TRF Tandem_Repeat 7210 7259 66 + . . scaffold36642 GLEAN mRNA 8683 9611 0.999986 + . ID=CGI_10002025; scaffold36642 TRF Tandem_Repeat 8683 9611 1101 + . . scaffold36642 GLEAN mRNA 2482 2808 0.999986 + . ID=CGI_10002025; scaffold36642 WUBlastX LINE_L1-Tx1 2482 2808 68 - . . scaffold36642 GLEAN mRNA 2365 2808 0.999986 + . ID=CGI_10002025; scaffold36642 WUBlastX LINE_L1-Tx1 2365 2808 31 - . . scaffold36642 GLEAN mRNA 3237 3746 0.999986 + . ID=CGI_10002025; scaffold36642 WUBlastX LINE_L1-Tx1 3237 3746 55 - . . scaffold36642 GLEAN mRNA 3125 3268 0.999986 + . ID=CGI_10002025; scaffold36642 WUBlastX LINE_L1 3125 3268 43 - . . scaffold36642 GLEAN mRNA 3333 3764 0.999986 + . ID=CGI_10002025; scaffold36642 WUBlastX LINE_L1-Tx1 3333 3764 137 - . . scaffold36642 GLEAN mRNA 3077 3268 0.999986 + . ID=CGI_10002025; scaffold36642 WUBlastX LINE_L1 3077 3268 25 - . . scaffold36674 GLEAN mRNA 5587 5632 0.999675 + . ID=CGI_10002040; scaffold36674 TRF Tandem_Repeat 5587 5632 76 + . . scaffold36674 GLEAN mRNA 5582 5635 0.999675 + . ID=CGI_10002040; scaffold36674 TRF Tandem_Repeat 5582 5635 76 + . . scaffold36674 GLEAN mRNA 24832 24872 0.651086 - . ID=CGI_10002041; scaffold36674 TRF Tandem_Repeat 24832 24872 82 + . . scaffold36638 GLEAN mRNA 15377 15442 0.499919 + . ID=CGI_10002047; scaffold36638 TRF Tandem_Repeat 15377 15442 59 + . . scaffold36638 GLEAN mRNA 15515 15636 0.499919 + . ID=CGI_10002047; scaffold36638 TRF Tandem_Repeat 15515 15636 52 + . . scaffold36638 GLEAN mRNA 13742 13972 0.499919 + . ID=CGI_10002047; scaffold36638 WUBlastX LINE_RTE-X 13742 13972 49 + . . scaffold36638 GLEAN mRNA 13868 13984 0.499919 + . ID=CGI_10002047; scaffold36638 WUBlastX LINE_RTE-X 13868 13984 69 + . . scaffold36638 GLEAN mRNA 24991 25659 1 - . ID=CGI_10002048; scaffold36638 TRF Tandem_Repeat 24991 25659 777 + . . scaffold36638 GLEAN mRNA 25251 25406 1 - . ID=CGI_10002048; scaffold36638 TRF Tandem_Repeat 25251 25406 82 + . . C36680 GLEAN mRNA 9207 9587 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 9207 9587 182 - . . C36680 GLEAN mRNA 9659 9832 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 9659 9832 106 - . . C36680 GLEAN mRNA 10596 10697 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 10596 10697 68 - . . C36680 GLEAN mRNA 10720 11013 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 10720 11013 56 - . . C36680 GLEAN mRNA 8898 9581 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 8898 9581 120 - . . C36680 GLEAN mRNA 8507 8938 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 8507 8938 51 - . . C36680 GLEAN mRNA 9674 9937 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 9674 9937 73 - . . C36680 GLEAN mRNA 9894 9986 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 9894 9986 24 - . . C36680 GLEAN mRNA 9988 10233 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 9988 10233 67 - . . C36680 GLEAN mRNA 10593 10742 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 10593 10742 37 - . . C36680 GLEAN mRNA 10021 10293 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 10021 10293 31 - . . C36680 GLEAN mRNA 9303 9650 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 9303 9650 80 - . . C36680 GLEAN mRNA 8669 8938 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 8669 8938 92 - . . C36680 GLEAN mRNA 10355 10420 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_L2 10355 10420 21 - . . C36680 GLEAN mRNA 17756 17797 0.727902 - . ID=CGI_10002070; C36680 TRF Tandem_Repeat 17756 17797 84 + . . C36680 GLEAN mRNA 17799 17851 0.727902 - . ID=CGI_10002070; C36680 TRF Tandem_Repeat 17799 17851 106 + . . C36680 GLEAN mRNA 33119 33168 0.999351 - . ID=CGI_10002071; C36680 TRF Tandem_Repeat 33119 33168 100 + . . C36680 GLEAN mRNA 33119 33168 0.999176 + . ID=CGI_10002072; C36680 TRF Tandem_Repeat 33119 33168 100 + . . C36680 GLEAN mRNA 35248 35329 0.999176 + . ID=CGI_10002072; C36680 TRF Tandem_Repeat 35248 35329 121 + . . scaffold36802 GLEAN mRNA 3272 3328 0.649473 + . ID=CGI_10002073; scaffold36802 WUBlastX DNA_Academ 3272 3511 86 + . . scaffold36802 GLEAN mRNA 2993 3289 0.649473 + . ID=CGI_10002073; scaffold36802 WUBlastX DNA_Academ 2981 3289 29 + . . scaffold36728 GLEAN mRNA 671 1699 0.999672 - . ID=CGI_10002097; scaffold36728 WUBlastX LINE_Penelope 671 1699 422 - . . scaffold36728 GLEAN mRNA 3852 5267 0.999672 - . ID=CGI_10002097; scaffold36728 WUBlastX LINE_RTE-X 3852 5267 685 - . . scaffold36728 GLEAN mRNA 19112 19409 0.990125 - . ID=CGI_10002098; scaffold36728 TRF Tandem_Repeat 19112 19409 276 + . . scaffold36728 GLEAN mRNA 23689 24246 0.990125 - . ID=CGI_10002098; scaffold36728 TRF Tandem_Repeat 23689 24246 954 + . . scaffold36716 GLEAN mRNA 7877 7920 0.45345 + . ID=CGI_10002099; scaffold36716 TRF Tandem_Repeat 7877 7920 88 + . . scaffold1206 GLEAN mRNA 25221 26286 0.905327 + . ID=CGI_10002106; scaffold1206 TRF Tandem_Repeat 25221 26286 1204 + . . scaffold1206 GLEAN mRNA 35358 35429 1 - . ID=CGI_10002107; scaffold1206 TRF Tandem_Repeat 35358 35429 72 + . . scaffold36768 GLEAN mRNA 36533 36691 1 + . ID=CGI_10002113; scaffold36768 WUBlastX LINE_L1-Tx1 36533 36691 82 + . . scaffold36768 GLEAN mRNA 36685 37212 1 + . ID=CGI_10002113; scaffold36768 WUBlastX LINE_L1-Tx1 36685 37212 169 + . . scaffold36768 GLEAN mRNA 36494 36679 1 + . ID=CGI_10002113; scaffold36768 WUBlastX LINE_L1-Tx1 36494 36679 55 + . . scaffold36768 GLEAN mRNA 36685 37359 1 + . ID=CGI_10002113; scaffold36768 WUBlastX LINE_L1 36685 37359 59 + . . scaffold36794 GLEAN mRNA 6054 7679 0.499919 + . ID=CGI_10002119; scaffold36794 WUBlastX LTR_Ngaro 6054 7679 1037 + . . scaffold36794 GLEAN mRNA 4940 6133 0.499919 + . ID=CGI_10002119; scaffold36794 WUBlastX LTR_Ngaro 4940 6133 93 + . . scaffold36794 GLEAN mRNA 5477 6130 0.499919 + . ID=CGI_10002119; scaffold36794 WUBlastX LTR_Ngaro 5477 6130 154 + . . scaffold36790 GLEAN mRNA 26004 26495 0.936014 - . ID=CGI_10002141; scaffold36790 WUBlastX LTR_Ngaro 26004 26495 177 + . . scaffold36790 GLEAN mRNA 25776 25859 0.936014 - . ID=CGI_10002141; scaffold36790 WUBlastX LTR_Ngaro 25776 25859 28 + . . scaffold36790 GLEAN mRNA 26527 26805 0.936014 - . ID=CGI_10002141; scaffold36790 WUBlastX LTR_Ngaro 26527 26805 129 + . . scaffold36790 GLEAN mRNA 26028 26633 0.936014 - . ID=CGI_10002141; scaffold36790 WUBlastX LTR_Ngaro 26028 26633 138 + . . scaffold36790 GLEAN mRNA 25463 25768 0.936014 - . ID=CGI_10002141; scaffold36790 WUBlastX LTR_Ngaro 25463 25768 157 + . . scaffold36790 GLEAN mRNA 25324 25449 0.936014 - . ID=CGI_10002141; scaffold36790 WUBlastX LTR_Ngaro 25324 25449 77 + . . scaffold36790 GLEAN mRNA 25791 25865 0.936014 - . ID=CGI_10002141; scaffold36790 WUBlastX LTR_Ngaro 25791 25865 56 + . . scaffold36790 GLEAN mRNA 26094 26501 0.936014 - . ID=CGI_10002141; scaffold36790 WUBlastX LTR_Ngaro 26094 26501 198 + . . scaffold36808 GLEAN mRNA 2936 2986 0.703847 - . ID=CGI_10002145; scaffold36808 TRF Tandem_Repeat 2936 2986 102 + . . scaffold36808 GLEAN mRNA 9162 9188 0.703847 - . ID=CGI_10002145; scaffold36808 TRF Tandem_Repeat 9162 9188 54 + . . scaffold36808 GLEAN mRNA 1481 1654 0.703847 - . ID=CGI_10002145; scaffold36808 WUBlastX LTR_ERV1 1481 1654 23 + . . scaffold36808 GLEAN mRNA 35358 35486 1 - . ID=CGI_10002147; scaffold36808 WUBlastX LINE_RTE-X 35358 35486 40 + . . scaffold36808 GLEAN mRNA 35334 35486 1 - . ID=CGI_10002147; scaffold36808 WUBlastX LINE_RTE-X 35334 35486 33 + . . scaffold36808 GLEAN mRNA 35346 35549 1 - . ID=CGI_10002147; scaffold36808 WUBlastX LINE_RTE-X 35346 35549 29 + . . scaffold36848 GLEAN mRNA 12885 12915 0.617315 - . ID=CGI_10002148; scaffold36848 TRF Tandem_Repeat 12885 12915 53 + . . scaffold36806 GLEAN mRNA 25022 25216 0.994851 + . ID=CGI_10002150; scaffold36806 WUBlastX LTR_Ngaro 25022 25216 51 + . . scaffold36806 GLEAN mRNA 25141 25236 0.994851 + . ID=CGI_10002150; scaffold36806 WUBlastX LTR_Ngaro 25141 25236 27 + . . scaffold36806 GLEAN mRNA 24091 24990 0.994851 + . ID=CGI_10002150; scaffold36806 WUBlastX LTR_Ngaro 24091 24990 415 + . . scaffold36862 GLEAN mRNA 24442 24489 0.999569 + . ID=CGI_10002161; scaffold36862 TRF Tandem_Repeat 24442 24489 96 + . . scaffold36862 GLEAN mRNA 37142 37768 1 + . ID=CGI_10002162; scaffold36862 WUBlastX LTR_DIRS 37142 37768 113 + . . scaffold36862 GLEAN mRNA 37722 37771 1 + . ID=CGI_10002162; scaffold36862 WUBlastX LTR_DIRS 37722 38585 415 + . . scaffold36904 GLEAN mRNA 14697 14729 0.991888 - . ID=CGI_10002168; scaffold36904 TRF Tandem_Repeat 14697 14729 66 + . . scaffold36904 GLEAN mRNA 17128 17296 0.991888 - . ID=CGI_10002168; scaffold36904 TRF Tandem_Repeat 17128 17296 107 + . . scaffold36904 GLEAN mRNA 17147 17242 0.991888 - . ID=CGI_10002168; scaffold36904 TRF Tandem_Repeat 17147 17242 66 + . . scaffold36904 GLEAN mRNA 17128 17278 0.991888 - . ID=CGI_10002168; scaffold36904 TRF Tandem_Repeat 17128 17278 143 + . . scaffold36904 GLEAN mRNA 17196 17326 0.991888 - . ID=CGI_10002168; scaffold36904 TRF Tandem_Repeat 17196 17326 117 + . . scaffold36904 GLEAN mRNA 17171 17308 0.991888 - . ID=CGI_10002168; scaffold36904 TRF Tandem_Repeat 17171 17308 170 + . . scaffold36904 GLEAN mRNA 26209 26255 0.991888 - . ID=CGI_10002168; scaffold36904 TRF Tandem_Repeat 26209 26255 94 + . . scaffold36904 GLEAN mRNA 23268 23330 0.991888 - . ID=CGI_10002168; scaffold36904 WUBlastX LTR_Gypsy 23268 23330 22 + . . scaffold36904 GLEAN mRNA 28294 28404 0.991888 - . ID=CGI_10002168; scaffold36904 WUBlastX LINE_CR1 28294 28404 21 - . . scaffold36904 GLEAN mRNA 26951 27760 0.991888 - . ID=CGI_10002168; scaffold36904 WUBlastX LINE_L2 26951 27760 345 - . . scaffold36898 GLEAN mRNA 712 837 0.573259 - . ID=CGI_10002175; scaffold36898 WUBlastX LTR_Pao 712 837 110 + . . scaffold36898 GLEAN mRNA 709 810 0.573259 - . ID=CGI_10002175; scaffold36898 WUBlastX LTR_Pao 709 810 112 + . . scaffold36898 GLEAN mRNA 16232 16271 0.999999 + . ID=CGI_10002176; scaffold36898 TRF Tandem_Repeat 16232 16271 80 + . . scaffold36936 GLEAN mRNA 6523 7078 0.932631 - . ID=CGI_10002182; scaffold36936 TRF Tandem_Repeat 6523 7078 997 + . . scaffold36936 GLEAN mRNA 10626 10790 0.932631 - . ID=CGI_10002182; scaffold36936 TRF Tandem_Repeat 10626 10790 159 + . . scaffold36936 GLEAN mRNA 15097 15618 0.932631 - . ID=CGI_10002182; scaffold36936 WUBlastX DNA_Crypton 15097 15618 182 - . . scaffold36936 GLEAN mRNA 15619 15975 0.932631 - . ID=CGI_10002182; scaffold36936 WUBlastX DNA_Crypton 15619 15975 107 - . . scaffold36936 GLEAN mRNA 14821 15573 0.932631 - . ID=CGI_10002182; scaffold36936 WUBlastX DNA_Crypton 14821 15573 73 - . . scaffold36936 GLEAN mRNA 18042 18434 0.932631 - . ID=CGI_10002182; scaffold36936 WUBlastX LTR_Pao 18042 18434 55 - . . scaffold36936 GLEAN mRNA 18234 18506 0.932631 - . ID=CGI_10002182; scaffold36936 WUBlastX LTR_Pao 18234 18506 28 - . . scaffold36936 GLEAN mRNA 17375 17881 0.932631 - . ID=CGI_10002182; scaffold36936 WUBlastX LTR_Pao 17375 17881 283 - . . scaffold36936 GLEAN mRNA 17384 17992 0.932631 - . ID=CGI_10002182; scaffold36936 WUBlastX LTR_Pao 17384 17992 37 - . . scaffold36936 GLEAN mRNA 23613 24632 0.932631 - . ID=CGI_10002182; scaffold36936 WUBlastX DNA_Maverick 23613 24632 582 - . . scaffold36906 GLEAN mRNA 1606 1672 0.841273 + . ID=CGI_10002185; scaffold36906 TRF Tandem_Repeat 1606 1672 71 + . . scaffold36906 GLEAN mRNA 2183 2231 0.841273 + . ID=CGI_10002185; scaffold36906 TRF Tandem_Repeat 2183 2231 98 + . . scaffold36906 GLEAN mRNA 17139 17219 0.841273 + . ID=CGI_10002185; scaffold36906 WUBlastX LTR_DIRS 17139 17219 33 - . . scaffold36906 GLEAN mRNA 17236 17844 0.841273 + . ID=CGI_10002185; scaffold36906 WUBlastX LTR_DIRS 17236 17844 428 - . . scaffold36906 GLEAN mRNA 17224 18072 0.841273 + . ID=CGI_10002185; scaffold36906 WUBlastX LTR_DIRS 17224 18072 338 - . . scaffold36906 GLEAN mRNA 16256 17179 0.841273 + . ID=CGI_10002185; scaffold36906 WUBlastX LTR_DIRS 16256 17179 416 - . . scaffold36928 GLEAN mRNA 11283 11337 0.983891 + . ID=CGI_10002193; scaffold36928 TRF Tandem_Repeat 11283 11337 56 + . . scaffold36928 GLEAN mRNA 11284 11337 0.983891 + . ID=CGI_10002193; scaffold36928 TRF Tandem_Repeat 11284 11337 72 + . . scaffold36928 GLEAN mRNA 11413 11444 0.983891 + . ID=CGI_10002193; scaffold36928 TRF Tandem_Repeat 11413 11444 64 + . . scaffold36928 GLEAN mRNA 16520 16557 0.983891 + . ID=CGI_10002193; scaffold36928 TRF Tandem_Repeat 16520 16557 76 + . . scaffold36928 GLEAN mRNA 20333 20365 0.983891 + . ID=CGI_10002193; scaffold36928 TRF Tandem_Repeat 20333 20365 66 + . . scaffold36928 GLEAN mRNA 22429 22476 0.983891 + . ID=CGI_10002193; scaffold36928 TRF Tandem_Repeat 22429 22476 71 + . . scaffold36928 GLEAN mRNA 25113 25137 0.983891 + . ID=CGI_10002193; scaffold36928 TRF Tandem_Repeat 25113 25137 50 + . . scaffold37010 GLEAN mRNA 8275 8321 0.615405 - . ID=CGI_10002195; scaffold37010 TRF Tandem_Repeat 8275 8321 94 + . . scaffold37010 GLEAN mRNA 10564 10606 0.529667 + . ID=CGI_10002196; scaffold37010 TRF Tandem_Repeat 10564 10606 86 + . . scaffold37010 GLEAN mRNA 30964 31089 0.529667 + . ID=CGI_10002196; scaffold37010 WUBlastX LTR_DIRS 30964 31089 49 - . . scaffold37010 GLEAN mRNA 30925 31092 0.529667 + . ID=CGI_10002196; scaffold37010 WUBlastX LTR_DIRS 30925 31092 49 - . . scaffold37010 GLEAN mRNA 31240 31632 0.529667 + . ID=CGI_10002196; scaffold37010 WUBlastX LTR_DIRS 31240 31632 91 - . . scaffold37010 GLEAN mRNA 31735 31896 0.529667 + . ID=CGI_10002196; scaffold37010 WUBlastX LTR_DIRS 31735 31896 22 - . . scaffold1438 GLEAN mRNA 10973 11102 0.982192 + . ID=CGI_10002215; scaffold1438 TRF Tandem_Repeat 10973 11102 93 + . . scaffold1438 GLEAN mRNA 11018 11164 0.982192 + . ID=CGI_10002215; scaffold1438 TRF Tandem_Repeat 11018 11164 73 + . . scaffold1438 GLEAN mRNA 22186 22301 0.982192 + . ID=CGI_10002215; scaffold1438 TRF Tandem_Repeat 22186 22301 110 + . . scaffold1438 GLEAN mRNA 22341 22434 0.982192 + . ID=CGI_10002215; scaffold1438 TRF Tandem_Repeat 22341 22434 82 + . . scaffold1438 GLEAN mRNA 22629 22713 0.982192 + . ID=CGI_10002215; scaffold1438 TRF Tandem_Repeat 22629 22713 91 + . . scaffold1438 GLEAN mRNA 23003 23129 0.982192 + . ID=CGI_10002215; scaffold1438 TRF Tandem_Repeat 23003 23129 121 + . . scaffold1438 GLEAN mRNA 23221 23314 0.982192 + . ID=CGI_10002215; scaffold1438 TRF Tandem_Repeat 23221 23314 82 + . . scaffold37006 GLEAN mRNA 22665 22694 0.554997 + . ID=CGI_10002223; scaffold37006 TRF Tandem_Repeat 22665 22694 51 + . . scaffold37006 GLEAN mRNA 26561 26830 0.554997 + . ID=CGI_10002223; scaffold37006 WUBlastX LTR_DIRS 26561 26830 100 - . . scaffold37006 GLEAN mRNA 26832 27212 0.554997 + . ID=CGI_10002223; scaffold37006 WUBlastX LTR_DIRS 26832 27212 245 - . . scaffold37006 GLEAN mRNA 27337 27483 0.554997 + . ID=CGI_10002223; scaffold37006 WUBlastX LTR_DIRS 27337 27483 41 - . . scaffold37006 GLEAN mRNA 26832 27305 0.554997 + . ID=CGI_10002223; scaffold37006 WUBlastX LTR_DIRS 26832 27305 210 - . . scaffold37006 GLEAN mRNA 31101 31427 0.554997 + . ID=CGI_10002223; scaffold37006 WUBlastX LINE_L2 31101 31427 54 - . . scaffold37006 GLEAN mRNA 31501 33852 0.554997 + . ID=CGI_10002223; scaffold37006 WUBlastX LINE_CR1-L2 31501 33852 831 - . . scaffold37002 GLEAN mRNA 21701 21733 0.558134 - . ID=CGI_10002232; scaffold37002 TRF Tandem_Repeat 21701 21733 66 + . . scaffold37002 GLEAN mRNA 30002 30045 0.619194 - . ID=CGI_10002233; scaffold37002 TRF Tandem_Repeat 30002 30045 88 + . . scaffold1368 GLEAN mRNA 12650 12700 1 + . ID=CGI_10002236; scaffold1368 TRF Tandem_Repeat 12650 12700 93 + . . scaffold1368 GLEAN mRNA 32666 33397 1 - . ID=CGI_10002238; scaffold1368 WUBlastX LINE_L2 32666 33397 26 - . . scaffold37032 GLEAN mRNA 33487 33526 0.919454 - . ID=CGI_10002246; scaffold37032 TRF Tandem_Repeat 33487 33526 80 + . . scaffold37032 GLEAN mRNA 37121 37363 0.919454 - . ID=CGI_10002246; scaffold37032 TRF Tandem_Repeat 37121 37363 159 + . . scaffold36998 GLEAN mRNA 37296 37700 0.558395 + . ID=CGI_10002247; scaffold36998 WUBlastX LINE_L1 37296 37700 28 + . . scaffold37062 GLEAN mRNA 5226 5669 0.965908 + . ID=CGI_10002249; scaffold37062 WUBlastX LTR_ERV1 5226 5669 30 + . . scaffold1653 GLEAN mRNA 13490 13535 0.662343 - . ID=CGI_10002251; scaffold1653 TRF Tandem_Repeat 13490 13535 56 + . . scaffold1653 GLEAN mRNA 29753 29953 0.980452 - . ID=CGI_10002252; scaffold1653 WUBlastX DNA_TcMar-ISRm1 29753 29953 97 - . . scaffold1653 GLEAN mRNA 29747 30106 0.980452 - . ID=CGI_10002252; scaffold1653 WUBlastX DNA_TcMar-Ant1 29741 30106 89 - . . scaffold1748 GLEAN mRNA 16230 16280 0.934576 - . ID=CGI_10002254; scaffold1748 TRF Tandem_Repeat 16230 16280 102 + . . scaffold1748 GLEAN mRNA 20531 20571 0.934576 - . ID=CGI_10002254; scaffold1748 TRF Tandem_Repeat 20531 20571 82 + . . scaffold1748 GLEAN mRNA 20735 20798 0.934576 - . ID=CGI_10002254; scaffold1748 TRF Tandem_Repeat 20735 20798 128 + . . scaffold1748 GLEAN mRNA 20531 20571 0.999389 + . ID=CGI_10002255; scaffold1748 TRF Tandem_Repeat 20531 20571 82 + . . scaffold1748 GLEAN mRNA 20735 20798 0.999389 + . ID=CGI_10002255; scaffold1748 TRF Tandem_Repeat 20735 20798 128 + . . scaffold1748 GLEAN mRNA 22867 22920 0.999389 + . ID=CGI_10002255; scaffold1748 TRF Tandem_Repeat 22867 22920 99 + . . scaffold1748 GLEAN mRNA 22677 22844 0.999389 + . ID=CGI_10002255; scaffold1748 WUBlastX LINE_L2 22677 22844 39 - . . scaffold1748 GLEAN mRNA 22722 22844 0.999389 + . ID=CGI_10002255; scaffold1748 WUBlastX LINE_L2 22722 22844 103 - . . scaffold1748 GLEAN mRNA 31937 32019 0.407505 + . ID=CGI_10002256; scaffold1748 TRF Tandem_Repeat 31937 32019 93 + . . scaffold1748 GLEAN mRNA 36175 36209 0.407505 + . ID=CGI_10002256; scaffold1748 TRF Tandem_Repeat 36175 36209 70 + . . scaffold37046 GLEAN mRNA 13540 13604 0.810891 - . ID=CGI_10002257; scaffold37046 TRF Tandem_Repeat 13540 13604 107 + . . scaffold37046 GLEAN mRNA 29994 30062 0.810891 - . ID=CGI_10002257; scaffold37046 TRF Tandem_Repeat 29994 30062 54 + . . scaffold37064 GLEAN mRNA 7009 7138 0.861672 + . ID=CGI_10002258; scaffold37064 TRF Tandem_Repeat 7009 7138 63 + . . scaffold37064 GLEAN mRNA 19224 19282 0.861672 + . ID=CGI_10002258; scaffold37064 TRF Tandem_Repeat 19224 19282 63 + . . scaffold37064 GLEAN mRNA 28140 28189 0.814068 - . ID=CGI_10002260; scaffold37064 TRF Tandem_Repeat 28140 28189 91 + . . scaffold37064 GLEAN mRNA 27094 27891 0.814068 - . ID=CGI_10002260; scaffold37064 WUBlastX DNA_Kolobok-Hyd 27094 27891 52 - . . scaffold37092 GLEAN mRNA 3347 3385 0.999958 + . ID=CGI_10002286; scaffold37092 TRF Tandem_Repeat 3347 3385 62 + . . scaffold37092 GLEAN mRNA 3744 3797 0.999958 + . ID=CGI_10002286; scaffold37092 TRF Tandem_Repeat 3744 3797 108 + . . scaffold37092 GLEAN mRNA 3797 3840 0.999958 + . ID=CGI_10002286; scaffold37092 TRF Tandem_Repeat 3797 3840 88 + . . scaffold37092 GLEAN mRNA 3946 3986 0.999958 + . ID=CGI_10002286; scaffold37092 TRF Tandem_Repeat 3946 3986 82 + . . scaffold37148 GLEAN mRNA 9638 9695 0.645987 - . ID=CGI_10002291; scaffold37148 TRF Tandem_Repeat 9638 9695 107 + . . scaffold37148 GLEAN mRNA 10988 11209 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 10988 11209 41 + . . scaffold37148 GLEAN mRNA 12533 12868 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_L1-Tx1 12533 12868 62 + . . scaffold37148 GLEAN mRNA 10384 10992 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 10384 10992 44 + . . scaffold37148 GLEAN mRNA 11030 11209 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 11030 11209 69 + . . scaffold37148 GLEAN mRNA 16859 16955 0.645987 - . ID=CGI_10002291; scaffold37148 TRF Tandem_Repeat 16859 16955 126 + . . scaffold37148 GLEAN mRNA 17890 18078 0.645987 - . ID=CGI_10002291; scaffold37148 TRF Tandem_Repeat 17890 18078 272 + . . scaffold37148 GLEAN mRNA 29710 29823 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 29710 29823 41 + . . scaffold37148 GLEAN mRNA 28863 29117 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 28863 29117 58 + . . scaffold37148 GLEAN mRNA 29599 29736 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 29599 29736 32 + . . scaffold37148 GLEAN mRNA 29713 29874 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 29713 29874 27 + . . scaffold37148 GLEAN mRNA 28044 28175 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 28044 28175 21 + . . scaffold37148 GLEAN mRNA 28857 29402 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 28857 29402 38 + . . scaffold37148 GLEAN mRNA 29429 29527 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX LINE_RTE-BovB 29429 29527 21 + . . scaffold37148 GLEAN mRNA 16185 16589 0.645987 - . ID=CGI_10002291; scaffold37148 WUBlastX DNA_Harbinger 16185 16589 187 - . . scaffold37134 GLEAN mRNA 25181 25234 0.465716 + . ID=CGI_10002292; scaffold37134 TRF Tandem_Repeat 25181 25234 99 + . . scaffold37134 GLEAN mRNA 28608 29951 0.465716 + . ID=CGI_10002292; scaffold37134 TRF Tandem_Repeat 28608 29951 1219 + . . scaffold37134 GLEAN mRNA 31857 31888 0.465716 + . ID=CGI_10002292; scaffold37134 TRF Tandem_Repeat 31857 31888 57 + . . scaffold26 GLEAN mRNA 11903 12037 1 + . ID=CGI_10002294; scaffold26 TRF Tandem_Repeat 11903 12037 218 + . . scaffold26 GLEAN mRNA 38370 38705 0.783788 + . ID=CGI_10002298; scaffold26 WUBlastX LTR_Gypsy 38370 38705 150 - . . scaffold26 GLEAN mRNA 38442 38723 0.783788 + . ID=CGI_10002298; scaffold26 WUBlastX LTR_Gypsy 38442 38723 279 - . . scaffold26 GLEAN mRNA 38484 38774 0.783788 + . ID=CGI_10002298; scaffold26 WUBlastX LTR_Gypsy 38484 38774 67 - . . scaffold37206 GLEAN mRNA 11475 11527 0.606704 + . ID=CGI_10002305; scaffold37206 TRF Tandem_Repeat 11475 11527 54 + . . scaffold37206 GLEAN mRNA 14884 15117 0.606704 + . ID=CGI_10002305; scaffold37206 WUBlastX DNA_Merlin 14884 15117 110 - . . scaffold37206 GLEAN mRNA 16603 17369 0.606704 + . ID=CGI_10002305; scaffold37206 TRF Tandem_Repeat 16603 17369 1037 + . . scaffold37206 GLEAN mRNA 18541 19368 0.606704 + . ID=CGI_10002305; scaffold37206 TRF Tandem_Repeat 18541 19368 1014 + . . scaffold344 GLEAN mRNA 15035 15101 0.452382 + . ID=CGI_10002322; scaffold344 TRF Tandem_Repeat 15035 15101 80 + . . scaffold344 GLEAN mRNA 15035 15101 0.452382 + . ID=CGI_10002322; scaffold344 TRF Tandem_Repeat 15035 15101 89 + . . scaffold37286 GLEAN mRNA 26039 26103 0.499838 + . ID=CGI_10002324; scaffold37286 TRF Tandem_Repeat 26039 26103 130 + . . scaffold37286 GLEAN mRNA 30328 30354 0.499838 + . ID=CGI_10002324; scaffold37286 TRF Tandem_Repeat 30328 30354 54 + . . scaffold37286 GLEAN mRNA 31119 31161 0.499838 + . ID=CGI_10002324; scaffold37286 TRF Tandem_Repeat 31119 31161 86 + . . scaffold37286 GLEAN mRNA 31228 31254 0.499838 + . ID=CGI_10002324; scaffold37286 TRF Tandem_Repeat 31228 31254 54 + . . scaffold37358 GLEAN mRNA 11634 11688 0.999188 - . ID=CGI_10002325; scaffold37358 TRF Tandem_Repeat 11634 11688 110 + . . scaffold37358 GLEAN mRNA 16088 16306 0.841067 + . ID=CGI_10002326; scaffold37358 TRF Tandem_Repeat 16088 16306 303 + . . scaffold37358 GLEAN mRNA 16171 16353 0.841067 + . ID=CGI_10002326; scaffold37358 TRF Tandem_Repeat 16171 16353 87 + . . scaffold37358 GLEAN mRNA 17958 18005 0.841067 + . ID=CGI_10002326; scaffold37358 TRF Tandem_Repeat 17958 18005 96 + . . scaffold37358 GLEAN mRNA 22313 22353 0.841067 + . ID=CGI_10002326; scaffold37358 TRF Tandem_Repeat 22313 22353 73 + . . scaffold37358 GLEAN mRNA 22313 22354 0.841067 + . ID=CGI_10002326; scaffold37358 TRF Tandem_Repeat 22313 22354 57 + . . scaffold37344 GLEAN mRNA 9146 9178 0.999504 + . ID=CGI_10002330; scaffold37344 TRF Tandem_Repeat 9146 9178 66 + . . scaffold37344 GLEAN mRNA 24713 24765 0.770733 + . ID=CGI_10002332; scaffold37344 TRF Tandem_Repeat 24713 24765 106 + . . scaffold37344 GLEAN mRNA 24962 25016 0.770733 + . ID=CGI_10002332; scaffold37344 TRF Tandem_Repeat 24962 25016 110 + . . scaffold37344 GLEAN mRNA 26222 26248 0.770733 + . ID=CGI_10002332; scaffold37344 TRF Tandem_Repeat 26222 26248 54 + . . scaffold37344 GLEAN mRNA 26987 27016 0.770733 + . ID=CGI_10002332; scaffold37344 TRF Tandem_Repeat 26987 27016 60 + . . scaffold37344 GLEAN mRNA 34709 34746 0.770733 + . ID=CGI_10002332; scaffold37344 TRF Tandem_Repeat 34709 34746 67 + . . scaffold1679 GLEAN mRNA 27572 28150 0.999999 - . ID=CGI_10002338; scaffold1679 WUBlastX LTR_Gypsy 27572 28150 139 - . . scaffold1679 GLEAN mRNA 29308 30708 0.999999 - . ID=CGI_10002338; scaffold1679 WUBlastX LTR_Gypsy 29308 30708 1157 - . . scaffold1679 GLEAN mRNA 32086 32553 0.999999 - . ID=CGI_10002338; scaffold1679 WUBlastX LTR_Gypsy 32086 32553 43 - . . scaffold1679 GLEAN mRNA 28792 32187 0.999999 - . ID=CGI_10002338; scaffold1679 WUBlastX LTR_Gypsy 28792 32187 652 - . . scaffold1679 GLEAN mRNA 28624 31473 0.999999 - . ID=CGI_10002338; scaffold1679 WUBlastX LTR_Gypsy 28624 31473 1131 - . . scaffold1679 GLEAN mRNA 31174 32424 0.999999 - . ID=CGI_10002338; scaffold1679 WUBlastX LTR_Gypsy 31174 32424 47 - . . scaffold1679 GLEAN mRNA 28125 28622 0.999999 - . ID=CGI_10002338; scaffold1679 WUBlastX LTR_Gypsy 28125 28622 258 - . . scaffold37386 GLEAN mRNA 12120 12837 0.999676 + . ID=CGI_10002339; scaffold37386 TRF Tandem_Repeat 12120 12837 1149 + . . scaffold1006 GLEAN mRNA 31076 31139 0.53754 + . ID=CGI_10002343; scaffold1006 TRF Tandem_Repeat 31076 31139 128 + . . scaffold1006 GLEAN mRNA 31156 31194 0.53754 + . ID=CGI_10002343; scaffold1006 TRF Tandem_Repeat 31156 31194 51 + . . scaffold37430 GLEAN mRNA 26545 26581 0.539363 + . ID=CGI_10002358; scaffold37430 TRF Tandem_Repeat 26545 26581 56 + . . scaffold37430 GLEAN mRNA 40482 40640 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 40482 40640 123 - . . scaffold37430 GLEAN mRNA 41134 41742 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 41134 41742 142 - . . scaffold37430 GLEAN mRNA 40634 41149 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 40634 41149 225 - . . scaffold37430 GLEAN mRNA 40634 41521 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 40634 41521 214 - . . scaffold37430 GLEAN mRNA 38217 38474 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 38217 38474 229 - . . scaffold37430 GLEAN mRNA 37967 38206 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 37967 38206 34 - . . scaffold37430 GLEAN mRNA 38082 38456 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 38082 38456 141 - . . scaffold37430 GLEAN mRNA 38473 40479 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 38473 40479 463 - . . scaffold37430 GLEAN mRNA 38048 38206 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 38048 38206 79 - . . scaffold37430 GLEAN mRNA 40048 40560 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 40048 40560 218 - . . scaffold37430 GLEAN mRNA 38154 38459 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 38154 38459 205 - . . scaffold37430 GLEAN mRNA 38473 39795 0.539363 + . ID=CGI_10002358; scaffold37430 WUBlastX LTR_Pao 38473 39795 579 - . . scaffold37424 GLEAN mRNA 15773 15868 1 - . ID=CGI_10002371; scaffold37424 WUBlastX DNA_Harbinger 15773 15868 25 - . . scaffold37424 GLEAN mRNA 15867 15898 1 - . ID=CGI_10002371; scaffold37424 WUBlastX DNA_Harbinger 15867 16082 59 - . . scaffold37436 GLEAN mRNA 11081 11139 0.0600399 + . ID=CGI_10002379; scaffold37436 TRF Tandem_Repeat 11081 11139 118 + . . scaffold37436 GLEAN mRNA 12349 13350 0.0600399 + . ID=CGI_10002379; scaffold37436 WUBlastX DNA_TcMar-Tc1 12349 13350 458 - . . scaffold37436 GLEAN mRNA 17249 17290 0.0600399 + . ID=CGI_10002379; scaffold37436 TRF Tandem_Repeat 17249 17290 84 + . . scaffold37500 GLEAN mRNA 3316 3409 0.619262 - . ID=CGI_10002381; scaffold37500 TRF Tandem_Repeat 3316 3409 120 + . . scaffold37500 GLEAN mRNA 3929 4069 0.619262 - . ID=CGI_10002381; scaffold37500 WUBlastX DNA_Chapaev 3929 4069 34 - . . scaffold37500 GLEAN mRNA 25047 25140 0.193393 - . ID=CGI_10002382; scaffold37500 TRF Tandem_Repeat 25047 25140 118 + . . scaffold37500 GLEAN mRNA 25760 25855 0.193393 - . ID=CGI_10002382; scaffold37500 TRF Tandem_Repeat 25760 25855 75 + . . scaffold37500 GLEAN mRNA 31402 31680 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LINE_CR1-L2 31402 31680 99 - . . scaffold37500 GLEAN mRNA 29889 30452 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LINE_CR1-L2 29889 30452 54 - . . scaffold37500 GLEAN mRNA 27306 28184 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LINE_L2 27306 28184 479 - . . scaffold37500 GLEAN mRNA 28172 28699 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LINE_L2 28172 28699 321 - . . scaffold37500 GLEAN mRNA 28678 29166 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LINE_L2 28678 29166 277 - . . scaffold37500 GLEAN mRNA 29154 30365 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LINE_L2 29154 30365 464 - . . scaffold37500 GLEAN mRNA 31366 31752 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LINE_L2 31366 31752 92 - . . scaffold37500 GLEAN mRNA 26760 26795 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LINE_RTE-X 26760 26795 22 - . . scaffold37500 GLEAN mRNA 18299 18514 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LTR_Gypsy 18299 18514 24 - . . scaffold37500 GLEAN mRNA 32836 32886 0.193393 - . ID=CGI_10002382; scaffold37500 TRF Tandem_Repeat 32836 32886 102 + . . scaffold37500 GLEAN mRNA 33328 33401 0.193393 - . ID=CGI_10002382; scaffold37500 TRF Tandem_Repeat 33328 33401 148 + . . scaffold37472 GLEAN mRNA 3289 4071 0.999786 + . ID=CGI_10002390; scaffold37472 TRF Tandem_Repeat 3289 4071 1086 + . . scaffold37472 GLEAN mRNA 4539 4878 0.999786 + . ID=CGI_10002390; scaffold37472 TRF Tandem_Repeat 4539 4878 353 + . . scaffold37472 GLEAN mRNA 5342 6004 0.999786 + . ID=CGI_10002390; scaffold37472 TRF Tandem_Repeat 5342 6004 790 + . . scaffold37472 GLEAN mRNA 6466 6805 0.999786 + . ID=CGI_10002390; scaffold37472 TRF Tandem_Repeat 6466 6805 355 + . . scaffold37472 GLEAN mRNA 23043 23110 0.999786 + . ID=CGI_10002390; scaffold37472 TRF Tandem_Repeat 23043 23110 136 + . . scaffold37472 GLEAN mRNA 29614 29694 0.999786 + . ID=CGI_10002390; scaffold37472 WUBlastX LINE_CR1 29614 29694 56 + . . scaffold37472 GLEAN mRNA 29693 29724 0.999786 + . ID=CGI_10002390; scaffold37472 WUBlastX LINE_CR1 29693 29791 36 + . . scaffold37472 GLEAN mRNA 29596 29694 0.999786 + . ID=CGI_10002390; scaffold37472 WUBlastX LINE_CR1 29596 29694 44 + . . scaffold37508 GLEAN mRNA 18510 18546 0.992866 - . ID=CGI_10002397; scaffold37508 TRF Tandem_Repeat 18510 18546 74 + . . scaffold37508 GLEAN mRNA 22590 22632 0.992866 - . ID=CGI_10002397; scaffold37508 TRF Tandem_Repeat 22590 22632 50 + . . scaffold37508 GLEAN mRNA 22595 22637 0.992866 - . ID=CGI_10002397; scaffold37508 TRF Tandem_Repeat 22595 22637 50 + . . scaffold37532 GLEAN mRNA 32395 32640 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 32395 32640 128 - . . scaffold37532 GLEAN mRNA 31671 32123 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 31671 32123 77 - . . scaffold37532 GLEAN mRNA 31830 32144 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 31830 32144 192 - . . scaffold37532 GLEAN mRNA 31746 32144 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 31746 32144 133 - . . scaffold37532 GLEAN mRNA 32165 32374 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 32165 32374 126 - . . scaffold37532 GLEAN mRNA 32395 32598 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 32395 32598 150 - . . scaffold37532 GLEAN mRNA 41150 41680 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 41150 41680 336 + . . scaffold37532 GLEAN mRNA 32842 33687 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 32842 33687 79 - . . scaffold37532 GLEAN mRNA 41147 41917 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 41147 41917 142 + . . scaffold37532 GLEAN mRNA 41497 42003 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 41497 42003 36 + . . scaffold37532 GLEAN mRNA 33073 33516 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 33073 33516 92 - . . scaffold37532 GLEAN mRNA 41893 42111 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 41893 42111 21 + . . scaffold37532 GLEAN mRNA 42912 43092 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX DNA_TcMar-Marin 42912 43196 52 - . . scaffold37532 GLEAN mRNA 32129 33166 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 32129 33166 94 - . . scaffold37558 GLEAN mRNA 5720 5757 0.499838 + . ID=CGI_10002409; scaffold37558 TRF Tandem_Repeat 5720 5757 67 + . . scaffold37558 GLEAN mRNA 6681 6706 0.499838 + . ID=CGI_10002409; scaffold37558 TRF Tandem_Repeat 6681 6706 52 + . . scaffold37558 GLEAN mRNA 10415 10465 0.499838 + . ID=CGI_10002409; scaffold37558 TRF Tandem_Repeat 10415 10465 88 + . . scaffold37558 GLEAN mRNA 10641 10681 0.499838 + . ID=CGI_10002409; scaffold37558 TRF Tandem_Repeat 10641 10681 73 + . . scaffold37558 GLEAN mRNA 9352 9825 0.499838 + . ID=CGI_10002409; scaffold37558 WUBlastX LTR_Gypsy 9352 9825 64 - . . scaffold1106 GLEAN mRNA 7010 7039 0.739652 - . ID=CGI_10002424; scaffold1106 TRF Tandem_Repeat 7010 7039 51 + . . scaffold1106 GLEAN mRNA 14276 14970 0.482682 + . ID=CGI_10002425; scaffold1106 TRF Tandem_Repeat 14276 14970 556 + . . scaffold1106 GLEAN mRNA 14129 14251 0.482682 + . ID=CGI_10002425; scaffold1106 WUBlastX LINE_L1 14129 14251 38 - . . scaffold1106 GLEAN mRNA 13929 14030 0.482682 + . ID=CGI_10002425; scaffold1106 WUBlastX LINE_L1-Tx1 13929 14030 34 - . . scaffold1106 GLEAN mRNA 42169 42207 0.544852 + . ID=CGI_10002426; scaffold1106 TRF Tandem_Repeat 42169 42207 60 + . . scaffold38026 GLEAN mRNA 29391 29439 1 - . ID=CGI_10002428; scaffold38026 TRF Tandem_Repeat 29391 29439 98 + . . scaffold38026 GLEAN mRNA 24330 24359 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 23769 24359 33 + . . scaffold38026 GLEAN mRNA 25289 25465 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 25289 25465 103 + . . scaffold38026 GLEAN mRNA 25461 26642 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 25461 26642 151 + . . scaffold38026 GLEAN mRNA 25259 25435 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 25259 25435 79 + . . scaffold38026 GLEAN mRNA 27080 27547 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 27080 27547 90 + . . scaffold38026 GLEAN mRNA 24777 25109 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy-Cigr 24777 25109 46 + . . scaffold38026 GLEAN mRNA 26921 27808 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 26921 27808 26 + . . scaffold38026 GLEAN mRNA 24717 24962 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 24717 24962 72 + . . scaffold38026 GLEAN mRNA 26409 26708 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 26409 26708 181 + . . scaffold38026 GLEAN mRNA 27278 27835 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 27278 27835 161 + . . scaffold38026 GLEAN mRNA 25639 26418 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 25639 26418 320 + . . scaffold38026 GLEAN mRNA 26409 26840 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 26409 26840 83 + . . scaffold38026 GLEAN mRNA 25220 25423 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 25220 25423 76 + . . scaffold38026 GLEAN mRNA 24684 24992 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 24684 24992 57 + . . scaffold37622 GLEAN mRNA 26424 26546 0.980135 - . ID=CGI_10002429; scaffold37622 WUBlastX LINE_L2 26424 26546 59 + . . scaffold37622 GLEAN mRNA 36323 36389 0.980135 - . ID=CGI_10002429; scaffold37622 TRF Tandem_Repeat 36323 36389 89 + . . scaffold37622 GLEAN mRNA 36902 36935 0.980135 - . ID=CGI_10002429; scaffold37622 TRF Tandem_Repeat 36902 36935 68 + . . scaffold37622 GLEAN mRNA 36933 36965 0.980135 - . ID=CGI_10002429; scaffold37622 TRF Tandem_Repeat 36933 36965 66 + . . scaffold37622 GLEAN mRNA 37153 37199 0.980135 - . ID=CGI_10002429; scaffold37622 TRF Tandem_Repeat 37153 37199 94 + . . scaffold37622 GLEAN mRNA 39588 39654 0.980135 - . ID=CGI_10002429; scaffold37622 TRF Tandem_Repeat 39588 39654 89 + . . scaffold37678 GLEAN mRNA 3518 3621 0.906607 - . ID=CGI_10002431; scaffold37678 TRF Tandem_Repeat 3518 3621 154 + . . scaffold37678 GLEAN mRNA 3910 3939 0.906607 - . ID=CGI_10002431; scaffold37678 TRF Tandem_Repeat 3910 3939 51 + . . scaffold37678 GLEAN mRNA 6655 6886 0.906607 - . ID=CGI_10002431; scaffold37678 TRF Tandem_Repeat 6655 6886 319 + . . scaffold37678 GLEAN mRNA 8393 13984 0.906607 - . ID=CGI_10002431; scaffold37678 WUBlastX RC_Helitron 8393 13984 1930 - . . scaffold37678 GLEAN mRNA 11840 14506 0.906607 - . ID=CGI_10002431; scaffold37678 WUBlastX DNA_Helitron 11840 14506 755 - . . scaffold37678 GLEAN mRNA 18939 18978 0.906607 - . ID=CGI_10002431; scaffold37678 TRF Tandem_Repeat 18939 18978 52 + . . scaffold37678 GLEAN mRNA 26844 26879 1 + . ID=CGI_10002432; scaffold37678 TRF Tandem_Repeat 26844 26879 72 + . . scaffold37678 GLEAN mRNA 35140 35200 1 - . ID=CGI_10002434; scaffold37678 TRF Tandem_Repeat 35140 35200 61 + . . scaffold37678 GLEAN mRNA 36111 36154 1 - . ID=CGI_10002434; scaffold37678 TRF Tandem_Repeat 36111 36154 52 + . . scaffold37664 GLEAN mRNA 30090 30722 0.581431 + . ID=CGI_10002440; scaffold37664 WUBlastX LINE_CR1-L2 30090 30722 236 + . . scaffold37664 GLEAN mRNA 30096 30839 0.581431 + . ID=CGI_10002440; scaffold37664 WUBlastX LINE_L2 30096 30839 182 + . . scaffold37664 GLEAN mRNA 31736 31831 0.581431 + . ID=CGI_10002440; scaffold37664 WUBlastX LINE_L2 31736 31831 26 + . . scaffold37664 GLEAN mRNA 29970 30701 0.581431 + . ID=CGI_10002440; scaffold37664 WUBlastX LINE_L2 29970 30701 40 + . . scaffold37662 GLEAN mRNA 43404 43433 0.524598 - . ID=CGI_10002444; scaffold37662 TRF Tandem_Repeat 43404 43433 60 + . . scaffold1820 GLEAN mRNA 10438 10632 0.840322 + . ID=CGI_10002445; scaffold1820 WUBlastX DNA_IS4EU 10438 10632 21 - . . scaffold1820 GLEAN mRNA 23944 23973 0.834235 + . ID=CGI_10002446; scaffold1820 TRF Tandem_Repeat 23944 23973 60 + . . scaffold1820 GLEAN mRNA 25505 25580 0.834235 + . ID=CGI_10002446; scaffold1820 TRF Tandem_Repeat 25505 25580 66 + . . scaffold1820 GLEAN mRNA 31020 31063 0.834235 + . ID=CGI_10002446; scaffold1820 TRF Tandem_Repeat 31020 31063 70 + . . scaffold1820 GLEAN mRNA 32969 33672 0.834235 + . ID=CGI_10002446; scaffold1820 TRF Tandem_Repeat 32969 33672 537 + . . scaffold1820 GLEAN mRNA 33331 33672 0.834235 + . ID=CGI_10002446; scaffold1820 TRF Tandem_Repeat 33331 33672 548 + . . scaffold1820 GLEAN mRNA 39172 39212 0.999543 + . ID=CGI_10002447; scaffold1820 TRF Tandem_Repeat 39172 39212 73 + . . scaffold1113 GLEAN mRNA 16718 16749 1 + . ID=CGI_10002450; scaffold1113 TRF Tandem_Repeat 16718 16749 64 + . . scaffold1113 GLEAN mRNA 16860 17622 1 + . ID=CGI_10002450; scaffold1113 TRF Tandem_Repeat 16860 17622 1081 + . . scaffold1113 GLEAN mRNA 18382 18767 1 + . ID=CGI_10002450; scaffold1113 TRF Tandem_Repeat 18382 18767 106 + . . scaffold1113 GLEAN mRNA 18579 18755 1 + . ID=CGI_10002450; scaffold1113 TRF Tandem_Repeat 18579 18755 116 + . . scaffold1113 GLEAN mRNA 18630 18703 1 + . ID=CGI_10002450; scaffold1113 TRF Tandem_Repeat 18630 18703 60 + . . scaffold1113 GLEAN mRNA 18578 18732 1 + . ID=CGI_10002450; scaffold1113 TRF Tandem_Repeat 18578 18732 93 + . . scaffold1113 GLEAN mRNA 18634 18702 1 + . ID=CGI_10002450; scaffold1113 TRF Tandem_Repeat 18634 18702 52 + . . scaffold1113 GLEAN mRNA 18621 18769 1 + . ID=CGI_10002450; scaffold1113 TRF Tandem_Repeat 18621 18769 89 + . . scaffold1113 GLEAN mRNA 26507 26536 0.500884 - . ID=CGI_10002452; scaffold1113 TRF Tandem_Repeat 26507 26536 60 + . . scaffold37680 GLEAN mRNA 43236 43447 1 - . ID=CGI_10002457; scaffold37680 TRF Tandem_Repeat 43236 43447 203 + . . scaffold37672 GLEAN mRNA 34456 34503 0.497004 + . ID=CGI_10002462; scaffold37672 TRF Tandem_Repeat 34456 34503 96 + . . scaffold37712 GLEAN mRNA 15209 15376 0.403354 - . ID=CGI_10002463; scaffold37712 WUBlastX DNA_Harbinger 15209 15376 105 - . . scaffold37712 GLEAN mRNA 15242 15430 0.403354 - . ID=CGI_10002463; scaffold37712 WUBlastX DNA_Harbinger 15242 15430 92 - . . scaffold37712 GLEAN mRNA 15906 16007 0.403354 - . ID=CGI_10002463; scaffold37712 WUBlastX DNA_Harbinger 15906 16007 48 - . . scaffold37712 GLEAN mRNA 34749 34787 0.403354 - . ID=CGI_10002463; scaffold37712 TRF Tandem_Repeat 34749 34787 78 + . . scaffold37712 GLEAN mRNA 37291 37437 0.403354 - . ID=CGI_10002463; scaffold37712 WUBlastX LTR_Gypsy 37291 37437 63 - . . scaffold37712 GLEAN mRNA 35907 36056 0.403354 - . ID=CGI_10002463; scaffold37712 WUBlastX LTR_Gypsy 35907 36056 22 + . . scaffold37712 GLEAN mRNA 36429 36818 0.403354 - . ID=CGI_10002463; scaffold37712 WUBlastX LTR_Gypsy 36429 36818 226 + . . scaffold37712 GLEAN mRNA 36324 36860 0.403354 - . ID=CGI_10002463; scaffold37712 WUBlastX LTR_Gypsy 36324 36860 225 + . . scaffold37712 GLEAN mRNA 35974 36333 0.403354 - . ID=CGI_10002463; scaffold37712 WUBlastX LTR_Gypsy 35974 36333 71 + . . scaffold37712 GLEAN mRNA 36136 36333 0.403354 - . ID=CGI_10002463; scaffold37712 WUBlastX LTR_Gypsy 36136 36333 82 + . . scaffold37712 GLEAN mRNA 37291 37389 0.403354 - . ID=CGI_10002463; scaffold37712 WUBlastX LTR_Gypsy 37291 37389 67 - . . scaffold37760 GLEAN mRNA 15184 15237 0.979677 + . ID=CGI_10002466; scaffold37760 WUBlastX LTR_ERVK 15184 15237 23 + . . scaffold37760 GLEAN mRNA 11326 13692 0.979677 + . ID=CGI_10002466; scaffold37760 WUBlastX LTR_Gypsy 11326 13692 767 + . . scaffold37760 GLEAN mRNA 11848 15222 0.979677 + . ID=CGI_10002466; scaffold37760 WUBlastX LTR_Gypsy 11848 15222 2065 + . . scaffold37760 GLEAN mRNA 17488 17546 0.979677 + . ID=CGI_10002466; scaffold37760 TRF Tandem_Repeat 17488 17546 118 + . . scaffold37760 GLEAN mRNA 21433 21609 0.979677 + . ID=CGI_10002466; scaffold37760 WUBlastX LTR_DIRS 21433 21609 43 - . . scaffold37760 GLEAN mRNA 21155 21223 0.979677 + . ID=CGI_10002466; scaffold37760 WUBlastX LTR_DIRS 21155 21223 35 - . . scaffold37760 GLEAN mRNA 20866 21078 0.979677 + . ID=CGI_10002466; scaffold37760 WUBlastX LTR_DIRS 20866 21078 92 - . . scaffold37760 GLEAN mRNA 20495 20941 0.979677 + . ID=CGI_10002466; scaffold37760 WUBlastX LTR_DIRS 20495 20941 188 - . . scaffold37760 GLEAN mRNA 20489 20872 0.979677 + . ID=CGI_10002466; scaffold37760 WUBlastX LTR_DIRS 20489 20872 244 - . . scaffold37740 GLEAN mRNA 9773 9880 0.630216 - . ID=CGI_10002468; scaffold37740 WUBlastX DNA_MuDR 9773 9880 89 - . . scaffold37740 GLEAN mRNA 8222 8803 0.630216 - . ID=CGI_10002468; scaffold37740 WUBlastX DNA_NOF 8222 8803 112 - . . scaffold37740 GLEAN mRNA 8426 8923 0.630216 - . ID=CGI_10002468; scaffold37740 WUBlastX DNA_NOF 8426 8923 136 - . . scaffold37740 GLEAN mRNA 11054 11374 0.630216 - . ID=CGI_10002468; scaffold37740 WUBlastX DNA_NOF 11054 11374 251 - . . scaffold37740 GLEAN mRNA 12057 12155 0.630216 - . ID=CGI_10002468; scaffold37740 WUBlastX DNA_NOF 12057 12155 34 - . . scaffold37740 GLEAN mRNA 10940 11311 0.630216 - . ID=CGI_10002468; scaffold37740 WUBlastX DNA_MuDR 10940 11311 25 - . . scaffold37740 GLEAN mRNA 15147 15227 0.409241 - . ID=CGI_10002469; scaffold37740 TRF Tandem_Repeat 15147 15227 153 + . . scaffold37740 GLEAN mRNA 17177 17236 0.409241 - . ID=CGI_10002469; scaffold37740 TRF Tandem_Repeat 17177 17236 111 + . . scaffold37740 GLEAN mRNA 27089 27376 0.409241 - . ID=CGI_10002469; scaffold37740 WUBlastX LINE_RTE-X 27089 27376 36 + . . scaffold1778 GLEAN mRNA 14009 14088 0.622734 - . ID=CGI_10002478; scaffold1778 TRF Tandem_Repeat 14009 14088 142 + . . scaffold1778 GLEAN mRNA 41330 41422 0.220539 - . ID=CGI_10002479; scaffold1778 WUBlastX LTR_Copia 41330 41422 40 + . . scaffold1778 GLEAN mRNA 41451 41714 0.220539 - . ID=CGI_10002479; scaffold1778 WUBlastX LTR_Copia 41451 41714 31 + . . scaffold1778 GLEAN mRNA 41318 41452 0.220539 - . ID=CGI_10002479; scaffold1778 WUBlastX LTR_Copia 41318 41452 29 + . . scaffold37732 GLEAN mRNA 45610 45671 0.987958 + . ID=CGI_10002485; scaffold37732 TRF Tandem_Repeat 45610 45671 51 + . . scaffold37732 GLEAN mRNA 46413 46430 0.987958 + . ID=CGI_10002485; scaffold37732 WUBlastX DNA_MuDR 46413 46616 104 - . . scaffold37732 GLEAN mRNA 46419 46430 0.987958 + . ID=CGI_10002485; scaffold37732 WUBlastX DNA_MuDR 46419 46703 70 - . . scaffold37732 GLEAN mRNA 46263 46430 0.987958 + . ID=CGI_10002485; scaffold37732 WUBlastX DNA_MuDR 46263 46586 95 - . . scaffold674 GLEAN mRNA 14475 15158 0.993811 + . ID=CGI_10002488; scaffold674 WUBlastX LTR_Ngaro 14475 15158 206 + . . scaffold674 GLEAN mRNA 12166 12651 0.993811 + . ID=CGI_10002488; scaffold674 WUBlastX LTR_Ngaro 12166 12651 170 + . . scaffold674 GLEAN mRNA 12937 14466 0.993811 + . ID=CGI_10002488; scaffold674 WUBlastX LTR_Ngaro 12937 14466 678 + . . scaffold674 GLEAN mRNA 12178 12813 0.993811 + . ID=CGI_10002488; scaffold674 WUBlastX LTR_Ngaro 12178 12813 69 + . . scaffold674 GLEAN mRNA 12160 12567 0.993811 + . ID=CGI_10002488; scaffold674 WUBlastX LTR_Ngaro 12160 12567 182 + . . scaffold674 GLEAN mRNA 15145 15366 0.993811 + . ID=CGI_10002488; scaffold674 WUBlastX LTR_Ngaro 15145 15366 120 + . . scaffold37772 GLEAN mRNA 11019 11154 0.204065 + . ID=CGI_10002492; scaffold37772 TRF Tandem_Repeat 11019 11154 85 + . . scaffold37772 GLEAN mRNA 10945 11154 0.204065 + . ID=CGI_10002492; scaffold37772 TRF Tandem_Repeat 10945 11154 144 + . . scaffold37772 GLEAN mRNA 11019 11171 0.204065 + . ID=CGI_10002492; scaffold37772 TRF Tandem_Repeat 11019 11171 109 + . . scaffold37772 GLEAN mRNA 14563 14604 0.204065 + . ID=CGI_10002492; scaffold37772 TRF Tandem_Repeat 14563 14604 50 + . . scaffold37772 GLEAN mRNA 19313 19495 0.204065 + . ID=CGI_10002492; scaffold37772 TRF Tandem_Repeat 19313 19495 249 + . . scaffold37772 GLEAN mRNA 22880 23278 0.678428 - . ID=CGI_10002493; scaffold37772 WUBlastX DNA_Maverick 22880 23278 121 - . . scaffold37772 GLEAN mRNA 22943 23248 0.678428 - . ID=CGI_10002493; scaffold37772 WUBlastX DNA_Maverick 22943 23248 175 - . . scaffold37772 GLEAN mRNA 22815 22928 0.678428 - . ID=CGI_10002493; scaffold37772 WUBlastX DNA_Maverick 22815 22928 45 - . . scaffold812 GLEAN mRNA 11017 11105 0.67845 + . ID=CGI_10002494; scaffold812 TRF Tandem_Repeat 11017 11105 88 + . . scaffold812 GLEAN mRNA 29918 30134 0.985139 + . ID=CGI_10002496; scaffold812 TRF Tandem_Repeat 29918 30134 179 + . . scaffold37790 GLEAN mRNA 7841 7921 1 - . ID=CGI_10002498; scaffold37790 TRF Tandem_Repeat 7841 7921 56 + . . scaffold37790 GLEAN mRNA 9886 10131 1 - . ID=CGI_10002498; scaffold37790 WUBlastX LTR_Ngaro 9886 10131 96 - . . scaffold37790 GLEAN mRNA 10173 10550 1 - . ID=CGI_10002498; scaffold37790 WUBlastX LTR_Ngaro 10173 10550 139 - . . scaffold37790 GLEAN mRNA 9808 10071 1 - . ID=CGI_10002498; scaffold37790 WUBlastX LTR_Ngaro 9808 10071 69 - . . scaffold37794 GLEAN mRNA 33466 33512 0.544852 + . ID=CGI_10002501; scaffold37794 TRF Tandem_Repeat 33466 33512 94 + . . scaffold37794 GLEAN mRNA 34743 35135 0.544852 + . ID=CGI_10002501; scaffold37794 WUBlastX DNA_hAT-Tip100 34743 35135 83 - . . scaffold37794 GLEAN mRNA 34767 34964 0.544852 + . ID=CGI_10002501; scaffold37794 WUBlastX DNA_hAT-Tip100 34767 34964 115 - . . scaffold37794 GLEAN mRNA 34665 34982 0.544852 + . ID=CGI_10002501; scaffold37794 WUBlastX DNA_hAT-Tip100 34665 34982 45 - . . scaffold47 GLEAN mRNA 21932 22925 0.999415 - . ID=CGI_10002504; scaffold47 TRF Tandem_Repeat 21932 22925 1460 + . . scaffold47 GLEAN mRNA 24964 25263 0.999415 - . ID=CGI_10002504; scaffold47 WUBlastX DNA_TcMar-Tc2 24964 25263 76 - . . scaffold47 GLEAN mRNA 25905 26228 0.999415 - . ID=CGI_10002504; scaffold47 WUBlastX DNA_TcMar-Fot1 25905 26228 92 - . . scaffold47 GLEAN mRNA 25956 26684 0.999415 - . ID=CGI_10002504; scaffold47 WUBlastX DNA_TcMar-Tc2 25956 26684 158 - . . scaffold37850 GLEAN mRNA 38743 38793 0.999674 - . ID=CGI_10002505; scaffold37850 TRF Tandem_Repeat 38743 38793 57 + . . scaffold37850 GLEAN mRNA 38747 38797 0.999674 - . ID=CGI_10002505; scaffold37850 TRF Tandem_Repeat 38747 38797 66 + . . scaffold37850 GLEAN mRNA 38743 38799 0.999674 - . ID=CGI_10002505; scaffold37850 TRF Tandem_Repeat 38743 38799 60 + . . scaffold37900 GLEAN mRNA 24702 24792 0.694403 - . ID=CGI_10002507; scaffold37900 TRF Tandem_Repeat 24702 24792 78 + . . scaffold37900 GLEAN mRNA 28989 29021 0.694403 - . ID=CGI_10002507; scaffold37900 TRF Tandem_Repeat 28989 29021 66 + . . scaffold37900 GLEAN mRNA 32352 32386 0.694403 - . ID=CGI_10002507; scaffold37900 TRF Tandem_Repeat 32352 32386 70 + . . scaffold37900 GLEAN mRNA 30711 31661 0.694403 - . ID=CGI_10002507; scaffold37900 WUBlastX DNA_IS4EU 30711 31661 131 - . . scaffold37900 GLEAN mRNA 20436 20792 0.694403 - . ID=CGI_10002507; scaffold37900 WUBlastX LINE_CR1 20436 20792 141 + . . scaffold37900 GLEAN mRNA 30735 31409 0.694403 - . ID=CGI_10002507; scaffold37900 WUBlastX DNA_IS4EU 30735 31409 191 - . . scaffold37900 GLEAN mRNA 20370 20792 0.694403 - . ID=CGI_10002507; scaffold37900 WUBlastX LINE_CR1 20370 20792 80 + . . scaffold37900 GLEAN mRNA 31933 32226 0.694403 - . ID=CGI_10002507; scaffold37900 WUBlastX DNA_IS4EU 31933 32226 61 - . . scaffold37900 GLEAN mRNA 29598 30356 0.694403 - . ID=CGI_10002507; scaffold37900 WUBlastX DNA_IS4EU 29598 30356 490 + . . scaffold37900 GLEAN mRNA 29448 30353 0.694403 - . ID=CGI_10002507; scaffold37900 WUBlastX DNA_IS4EU 29448 30353 436 + . . scaffold37900 GLEAN mRNA 27933 28421 0.694403 - . ID=CGI_10002507; scaffold37900 WUBlastX DNA_IS4EU 27933 28421 52 + . . scaffold37900 GLEAN mRNA 29087 29287 0.694403 - . ID=CGI_10002507; scaffold37900 WUBlastX DNA_IS4EU 29087 29287 20 + . . scaffold37844 GLEAN mRNA 5656 5937 0.999999 - . ID=CGI_10002508; scaffold37844 WUBlastX LINE_Penelope 5656 5937 38 - . . scaffold37844 GLEAN mRNA 5379 5669 0.999999 - . ID=CGI_10002508; scaffold37844 WUBlastX LINE_Penelope 5379 5669 68 - . . scaffold37858 GLEAN mRNA 14221 14257 0.995842 + . ID=CGI_10002515; scaffold37858 TRF Tandem_Repeat 14221 14257 56 + . . scaffold37858 GLEAN mRNA 25953 25981 0.995842 + . ID=CGI_10002515; scaffold37858 TRF Tandem_Repeat 25953 25981 58 + . . scaffold37858 GLEAN mRNA 14221 14257 1 - . ID=CGI_10002516; scaffold37858 TRF Tandem_Repeat 14221 14257 56 + . . scaffold37856 GLEAN mRNA 11522 11592 0.99885 - . ID=CGI_10002518; scaffold37856 TRF Tandem_Repeat 11522 11592 79 + . . scaffold37856 GLEAN mRNA 20265 20317 0.99885 - . ID=CGI_10002518; scaffold37856 TRF Tandem_Repeat 20265 20317 106 + . . scaffold37856 GLEAN mRNA 27340 27543 0.537786 + . ID=CGI_10002519; scaffold37856 WUBlastX LTR_Gypsy-Cigr 27340 27543 45 + . . scaffold37880 GLEAN mRNA 6367 6442 0.52423 - . ID=CGI_10002532; scaffold37880 TRF Tandem_Repeat 6367 6442 116 + . . scaffold37880 GLEAN mRNA 9485 9518 0.52423 - . ID=CGI_10002532; scaffold37880 TRF Tandem_Repeat 9485 9518 50 + . . scaffold37880 GLEAN mRNA 10387 10498 0.52423 - . ID=CGI_10002532; scaffold37880 TRF Tandem_Repeat 10387 10498 104 + . . scaffold37880 GLEAN mRNA 10374 10498 0.52423 - . ID=CGI_10002532; scaffold37880 TRF Tandem_Repeat 10374 10498 66 + . . scaffold37880 GLEAN mRNA 15409 15993 0.52423 - . ID=CGI_10002532; scaffold37880 WUBlastX DNA_Maverick 15409 15993 352 + . . scaffold37880 GLEAN mRNA 13487 13858 0.52423 - . ID=CGI_10002532; scaffold37880 WUBlastX DNA_TcMar-Ant1 13487 13858 102 + . . scaffold37880 GLEAN mRNA 13487 13801 0.52423 - . ID=CGI_10002532; scaffold37880 WUBlastX DNA_TcMar-Ant1 13487 13801 103 + . . scaffold37880 GLEAN mRNA 13325 13768 0.52423 - . ID=CGI_10002532; scaffold37880 WUBlastX DNA_TcMar-ISRm1 13325 13768 94 + . . scaffold37880 GLEAN mRNA 19327 20724 1 + . ID=CGI_10002533; scaffold37880 WUBlastX DNA_Zator 19063 20724 783 + . . scaffold37880 GLEAN mRNA 20774 21046 1 + . ID=CGI_10002533; scaffold37880 WUBlastX DNA_Zator 20774 21046 71 + . . scaffold37880 GLEAN mRNA 26692 26907 0.999833 + . ID=CGI_10002534; scaffold37880 WUBlastX DNA_Harbinger 26692 26907 51 + . . scaffold37880 GLEAN mRNA 26455 26559 0.999833 + . ID=CGI_10002534; scaffold37880 WUBlastX DNA_Harbinger 26455 26559 35 + . . scaffold37880 GLEAN mRNA 26292 26501 0.999833 + . ID=CGI_10002534; scaffold37880 WUBlastX DNA_Harbinger 26292 26501 130 + . . scaffold37880 GLEAN mRNA 25813 26007 0.999833 + . ID=CGI_10002534; scaffold37880 WUBlastX DNA_Harbinger 25678 26007 162 + . . scaffold37880 GLEAN mRNA 40434 40545 0.54365 - . ID=CGI_10002538; scaffold37880 TRF Tandem_Repeat 40434 40545 89 + . . scaffold37880 GLEAN mRNA 43794 43836 0.54365 - . ID=CGI_10002538; scaffold37880 TRF Tandem_Repeat 43794 43836 86 + . . scaffold37880 GLEAN mRNA 36940 37155 0.54365 - . ID=CGI_10002538; scaffold37880 WUBlastX LTR_ERVK 36940 37155 48 + . . scaffold37880 GLEAN mRNA 36836 36934 0.54365 - . ID=CGI_10002538; scaffold37880 WUBlastX LTR_Copia 36836 36934 46 + . . scaffold37880 GLEAN mRNA 36707 37048 0.54365 - . ID=CGI_10002538; scaffold37880 WUBlastX LTR_Copia 36707 37048 41 + . . scaffold37880 GLEAN mRNA 36940 37120 0.99998 + . ID=CGI_10002539; scaffold37880 WUBlastX LTR_ERVK 36940 37155 48 + . . scaffold37880 GLEAN mRNA 36836 36934 0.99998 + . ID=CGI_10002539; scaffold37880 WUBlastX LTR_Copia 36836 36934 46 + . . scaffold37880 GLEAN mRNA 36707 37048 0.99998 + . ID=CGI_10002539; scaffold37880 WUBlastX LTR_Copia 36707 37048 41 + . . scaffold1830 GLEAN mRNA 34188 34222 0.842897 + . ID=CGI_10002541; scaffold1830 TRF Tandem_Repeat 34188 34222 70 + . . scaffold1830 GLEAN mRNA 37060 37090 0.842897 + . ID=CGI_10002541; scaffold1830 TRF Tandem_Repeat 37060 37090 62 + . . scaffold37938 GLEAN mRNA 27653 27720 0.504705 + . ID=CGI_10002550; scaffold37938 TRF Tandem_Repeat 27653 27720 75 + . . scaffold37938 GLEAN mRNA 27672 27729 0.504705 + . ID=CGI_10002550; scaffold37938 TRF Tandem_Repeat 27672 27729 71 + . . scaffold37938 GLEAN mRNA 28286 28397 0.504705 + . ID=CGI_10002550; scaffold37938 TRF Tandem_Repeat 28286 28397 199 + . . scaffold37946 GLEAN mRNA 14131 14607 0.734311 + . ID=CGI_10002553; scaffold37946 WUBlastX LTR_Gypsy 14131 14607 74 - . . scaffold37946 GLEAN mRNA 14536 14637 0.734311 + . ID=CGI_10002553; scaffold37946 WUBlastX DNA_IS4EU 14536 14637 59 + . . scaffold37946 GLEAN mRNA 14050 14505 0.734311 + . ID=CGI_10002553; scaffold37946 WUBlastX LTR_Gypsy 14050 14505 106 - . . scaffold37946 GLEAN mRNA 14533 14700 0.734311 + . ID=CGI_10002553; scaffold37946 WUBlastX DNA_IS4EU 14533 14700 36 + . . scaffold37946 GLEAN mRNA 14696 14851 0.734311 + . ID=CGI_10002553; scaffold37946 WUBlastX DNA_IS4EU 14696 14851 31 + . . scaffold37946 GLEAN mRNA 17356 17397 0.734311 + . ID=CGI_10002553; scaffold37946 TRF Tandem_Repeat 17356 17397 52 + . . scaffold37946 GLEAN mRNA 17582 17641 0.734311 + . ID=CGI_10002553; scaffold37946 TRF Tandem_Repeat 17582 17641 120 + . . scaffold37968 GLEAN mRNA 43051 43121 0.889923 + . ID=CGI_10002555; scaffold37968 TRF Tandem_Repeat 43051 43121 70 + . . scaffold37968 GLEAN mRNA 43042 43117 0.889923 + . ID=CGI_10002555; scaffold37968 TRF Tandem_Repeat 43042 43117 64 + . . scaffold38010 GLEAN mRNA 15680 15753 0.999915 - . ID=CGI_10002573; scaffold38010 TRF Tandem_Repeat 15680 15753 87 + . . scaffold38010 GLEAN mRNA 15713 15806 0.999915 - . ID=CGI_10002573; scaffold38010 TRF Tandem_Repeat 15713 15806 116 + . . scaffold38010 GLEAN mRNA 26201 26259 1 - . ID=CGI_10002574; scaffold38010 TRF Tandem_Repeat 26201 26259 52 + . . scaffold38020 GLEAN mRNA 50394 50561 1 - . ID=CGI_10002579; scaffold38020 TRF Tandem_Repeat 50394 50769 518 + . . scaffold37992 GLEAN mRNA 7509 7549 1 + . ID=CGI_10002585; scaffold37992 TRF Tandem_Repeat 7509 7549 64 + . . scaffold37992 GLEAN mRNA 9367 9410 1 + . ID=CGI_10002585; scaffold37992 TRF Tandem_Repeat 9367 9410 88 + . . scaffold38048 GLEAN mRNA 37783 38598 0.557382 + . ID=CGI_10002589; scaffold38048 TRF Tandem_Repeat 37783 38598 771 + . . scaffold38048 GLEAN mRNA 37785 38598 0.557382 + . ID=CGI_10002589; scaffold38048 TRF Tandem_Repeat 37785 38598 814 + . . scaffold38048 GLEAN mRNA 38738 38778 0.557382 + . ID=CGI_10002589; scaffold38048 TRF Tandem_Repeat 38738 38778 73 + . . scaffold38048 GLEAN mRNA 33366 34202 0.557382 + . ID=CGI_10002589; scaffold38048 WUBlastX DNA_TcMar-Tc1 33366 34202 93 + . . scaffold38048 GLEAN mRNA 33173 33472 0.557382 + . ID=CGI_10002589; scaffold38048 WUBlastX DNA_TcMar-Tc1 33173 33472 55 + . . scaffold38048 GLEAN mRNA 33495 34211 0.557382 + . ID=CGI_10002589; scaffold38048 WUBlastX DNA_TcMar-Tc1 33495 34211 257 + . . scaffold38058 GLEAN mRNA 7521 7636 0.999159 - . ID=CGI_10002595; scaffold38058 TRF Tandem_Repeat 7521 7636 142 + . . scaffold38058 GLEAN mRNA 4495 4710 0.999159 - . ID=CGI_10002595; scaffold38058 WUBlastX LTR_Gypsy 4495 4710 23 - . . scaffold38058 GLEAN mRNA 4986 5513 0.999159 - . ID=CGI_10002595; scaffold38058 WUBlastX LTR_Gypsy 4986 5513 59 - . . scaffold38058 GLEAN mRNA 5497 5940 0.999159 - . ID=CGI_10002595; scaffold38058 WUBlastX LTR_Gypsy 5497 5940 31 - . . scaffold38058 GLEAN mRNA 5226 5531 0.999159 - . ID=CGI_10002595; scaffold38058 WUBlastX LTR_Gypsy-Cigr 5226 5531 118 - . . scaffold38058 GLEAN mRNA 4573 4995 0.999159 - . ID=CGI_10002595; scaffold38058 WUBlastX LTR_Gypsy 4573 4995 61 - . . scaffold38058 GLEAN mRNA 5416 5667 0.999159 - . ID=CGI_10002595; scaffold38058 WUBlastX LTR_Gypsy 5416 5667 86 - . . scaffold38058 GLEAN mRNA 4882 4995 0.999159 - . ID=CGI_10002595; scaffold38058 WUBlastX LTR_Gypsy 4882 4995 70 - . . scaffold38058 GLEAN mRNA 4666 5133 0.999159 - . ID=CGI_10002595; scaffold38058 WUBlastX LTR_Gypsy 4666 5133 67 - . . scaffold38058 GLEAN mRNA 4718 4870 0.999159 - . ID=CGI_10002595; scaffold38058 WUBlastX LTR_Gypsy 4718 4870 79 - . . scaffold38058 GLEAN mRNA 22418 22493 0.500876 + . ID=CGI_10002596; scaffold38058 TRF Tandem_Repeat 22418 22493 89 + . . scaffold38058 GLEAN mRNA 22418 22493 0.500876 + . ID=CGI_10002596; scaffold38058 TRF Tandem_Repeat 22418 22493 143 + . . scaffold38058 GLEAN mRNA 31478 31539 0.743861 + . ID=CGI_10002597; scaffold38058 TRF Tandem_Repeat 31478 31539 52 + . . scaffold38058 GLEAN mRNA 34211 34275 0.743861 + . ID=CGI_10002597; scaffold38058 TRF Tandem_Repeat 34211 34275 130 + . . scaffold38058 GLEAN mRNA 37205 37311 0.743861 + . ID=CGI_10002597; scaffold38058 TRF Tandem_Repeat 37205 37311 162 + . . scaffold38058 GLEAN mRNA 40069 40112 0.743861 + . ID=CGI_10002597; scaffold38058 TRF Tandem_Repeat 40069 40112 61 + . . scaffold38058 GLEAN mRNA 41385 41453 0.743861 + . ID=CGI_10002597; scaffold38058 TRF Tandem_Repeat 41385 41453 131 + . . scaffold38058 GLEAN mRNA 31478 31539 0.999425 - . ID=CGI_10002598; scaffold38058 TRF Tandem_Repeat 31478 31539 52 + . . scaffold38058 GLEAN mRNA 34211 34275 0.999425 - . ID=CGI_10002598; scaffold38058 TRF Tandem_Repeat 34211 34275 130 + . . scaffold38058 GLEAN mRNA 37205 37311 0.999425 - . ID=CGI_10002598; scaffold38058 TRF Tandem_Repeat 37205 37311 162 + . . scaffold38058 GLEAN mRNA 40069 40112 0.999425 - . ID=CGI_10002598; scaffold38058 TRF Tandem_Repeat 40069 40112 61 + . . scaffold38058 GLEAN mRNA 41385 41453 0.999425 - . ID=CGI_10002598; scaffold38058 TRF Tandem_Repeat 41385 41453 131 + . . scaffold1570 GLEAN mRNA 14565 14747 0.990546 + . ID=CGI_10002599; scaffold1570 WUBlastX DNA_PiggyBac 14565 14747 42 + . . scaffold1570 GLEAN mRNA 16312 17103 0.990546 + . ID=CGI_10002599; scaffold1570 WUBlastX DNA_P 16312 17103 118 + . . scaffold1570 GLEAN mRNA 18066 18751 0.918041 - . ID=CGI_10002600; scaffold1570 TRF Tandem_Repeat 18066 18751 1036 + . . scaffold1570 GLEAN mRNA 23934 23994 0.918041 - . ID=CGI_10002600; scaffold1570 TRF Tandem_Repeat 23934 23994 122 + . . scaffold38066 GLEAN mRNA 26079 26480 1 + . ID=CGI_10002612; scaffold38066 WUBlastX LINE_L1-Tx1 26079 26480 127 - . . scaffold312 GLEAN mRNA 6645 6693 0.999993 - . ID=CGI_10002621; scaffold312 TRF Tandem_Repeat 6645 6693 52 + . . scaffold407 GLEAN mRNA 15665 15722 0.999998 + . ID=CGI_10002626; scaffold407 TRF Tandem_Repeat 15665 15722 62 + . . scaffold407 GLEAN mRNA 14000 14137 0.999998 + . ID=CGI_10002626; scaffold407 WUBlastX LINE_RTE 14000 14137 35 + . . scaffold407 GLEAN mRNA 15435 15632 0.999998 + . ID=CGI_10002626; scaffold407 WUBlastX LINE_CR1-L2 15435 15632 29 + . . scaffold407 GLEAN mRNA 14561 14896 0.999998 + . ID=CGI_10002626; scaffold407 WUBlastX LINE_L2 14561 14896 197 + . . scaffold407 GLEAN mRNA 14896 15492 0.999998 + . ID=CGI_10002626; scaffold407 WUBlastX LINE_L2 14896 15492 214 + . . scaffold407 GLEAN mRNA 14495 14896 0.999998 + . ID=CGI_10002626; scaffold407 WUBlastX LINE_L2 14495 14896 80 + . . scaffold38108 GLEAN mRNA 27822 29772 0.612703 - . ID=CGI_10002629; scaffold38108 TRF Tandem_Repeat 27149 29772 3023 + . . scaffold38136 GLEAN mRNA 33647 35733 0.813967 + . ID=CGI_10002634; scaffold38136 TRF Tandem_Repeat 33647 35733 1769 + . . scaffold38130 GLEAN mRNA 28155 28556 0.998369 - . ID=CGI_10002636; scaffold38130 WUBlastX DNA_Maverick 28155 28556 110 - . . scaffold38130 GLEAN mRNA 27372 27998 0.998369 - . ID=CGI_10002636; scaffold38130 WUBlastX DNA_Maverick 27372 27998 296 - . . scaffold38130 GLEAN mRNA 28724 29824 0.998369 - . ID=CGI_10002636; scaffold38130 WUBlastX DNA_Maverick 28724 29824 372 - . . scaffold38130 GLEAN mRNA 32307 32507 0.988307 - . ID=CGI_10002637; scaffold38130 WUBlastX LTR_Gypsy 32307 32507 26 - . . scaffold38130 GLEAN mRNA 32847 33005 0.988307 - . ID=CGI_10002637; scaffold38130 WUBlastX DNA_Maverick 32847 33005 24 - . . scaffold38130 GLEAN mRNA 40856 40902 0.238967 + . ID=CGI_10002638; scaffold38130 TRF Tandem_Repeat 40856 40902 85 + . . scaffold865 GLEAN mRNA 11825 11865 0.465325 - . ID=CGI_10002639; scaffold865 TRF Tandem_Repeat 11825 11865 82 + . . scaffold865 GLEAN mRNA 20288 20794 0.465325 - . ID=CGI_10002639; scaffold865 TRF Tandem_Repeat 20288 20794 517 + . . scaffold865 GLEAN mRNA 20221 20795 0.465325 - . ID=CGI_10002639; scaffold865 TRF Tandem_Repeat 20221 20795 459 + . . scaffold865 GLEAN mRNA 18910 19071 0.465325 - . ID=CGI_10002639; scaffold865 WUBlastX LTR_Ngaro 18910 19071 87 - . . scaffold865 GLEAN mRNA 19112 19837 0.465325 - . ID=CGI_10002639; scaffold865 WUBlastX LTR_Ngaro 19112 19837 101 - . . scaffold865 GLEAN mRNA 19112 19495 0.465325 - . ID=CGI_10002639; scaffold865 WUBlastX LTR_Ngaro 19112 19495 125 - . . scaffold38148 GLEAN mRNA 3852 4853 0.99822 + . ID=CGI_10002640; scaffold38148 TRF Tandem_Repeat 3852 4853 1406 + . . scaffold38148 GLEAN mRNA 38327 38388 1 - . ID=CGI_10002643; scaffold38148 TRF Tandem_Repeat 38327 38388 54 + . . scaffold38148 GLEAN mRNA 39776 39941 1 - . ID=CGI_10002643; scaffold38148 TRF Tandem_Repeat 39776 39941 129 + . . scaffold38148 GLEAN mRNA 39940 40127 1 - . ID=CGI_10002643; scaffold38148 TRF Tandem_Repeat 39940 40127 225 + . . scaffold38148 GLEAN mRNA 40010 40127 1 - . ID=CGI_10002643; scaffold38148 TRF Tandem_Repeat 40010 40127 130 + . . scaffold38190 GLEAN mRNA 36075 37330 0.645487 - . ID=CGI_10002645; scaffold38190 TRF Tandem_Repeat 36075 37330 1754 + . . scaffold38190 GLEAN mRNA 38854 39114 0.645487 - . ID=CGI_10002645; scaffold38190 TRF Tandem_Repeat 38854 39114 468 + . . scaffold38190 GLEAN mRNA 41495 41941 0.645487 - . ID=CGI_10002645; scaffold38190 TRF Tandem_Repeat 41495 41941 366 + . . scaffold38190 GLEAN mRNA 42810 43245 0.645487 - . ID=CGI_10002645; scaffold38190 TRF Tandem_Repeat 42810 43245 809 + . . scaffold38190 GLEAN mRNA 43257 43969 0.645487 - . ID=CGI_10002645; scaffold38190 TRF Tandem_Repeat 43257 43969 1016 + . . scaffold38190 GLEAN mRNA 44635 44753 0.645487 - . ID=CGI_10002645; scaffold38190 TRF Tandem_Repeat 44635 44753 211 + . . scaffold38190 GLEAN mRNA 44888 45255 0.645487 - . ID=CGI_10002645; scaffold38190 TRF Tandem_Repeat 44888 45255 619 + . . scaffold38190 GLEAN mRNA 46918 47297 0.645487 - . ID=CGI_10002645; scaffold38190 TRF Tandem_Repeat 46918 47297 634 + . . scaffold38190 GLEAN mRNA 46918 47578 0.645487 - . ID=CGI_10002645; scaffold38190 TRF Tandem_Repeat 46918 47578 996 + . . scaffold38190 GLEAN mRNA 46918 47578 0.645487 - . ID=CGI_10002645; scaffold38190 TRF Tandem_Repeat 46918 47578 1007 + . . scaffold38190 GLEAN mRNA 47281 47323 0.645487 - . ID=CGI_10002645; scaffold38190 TRF Tandem_Repeat 47281 47323 59 + . . scaffold38190 GLEAN mRNA 47299 47578 0.645487 - . ID=CGI_10002645; scaffold38190 TRF Tandem_Repeat 47299 47578 434 + . . scaffold38162 GLEAN mRNA 12190 12247 0.999335 + . ID=CGI_10002646; scaffold38162 TRF Tandem_Repeat 12190 12247 116 + . . scaffold38162 GLEAN mRNA 13590 13617 0.999335 + . ID=CGI_10002646; scaffold38162 TRF Tandem_Repeat 13590 13617 56 + . . scaffold1755 GLEAN mRNA 30963 31214 1 + . ID=CGI_10002648; scaffold1755 WUBlastX LINE_Penelope 30963 31214 32 - . . scaffold1755 GLEAN mRNA 32274 32687 1 + . ID=CGI_10002648; scaffold1755 WUBlastX LINE_Penelope 32274 32687 124 - . . scaffold1755 GLEAN mRNA 33114 33164 1 + . ID=CGI_10002648; scaffold1755 TRF Tandem_Repeat 33114 33164 52 + . . scaffold1755 GLEAN mRNA 33114 33166 1 + . ID=CGI_10002648; scaffold1755 TRF Tandem_Repeat 33114 33166 74 + . . scaffold38186 GLEAN mRNA 32049 32087 0.998684 - . ID=CGI_10002657; scaffold38186 TRF Tandem_Repeat 32049 32087 78 + . . scaffold38186 GLEAN mRNA 40818 40855 0.998684 - . ID=CGI_10002657; scaffold38186 TRF Tandem_Repeat 40818 40855 58 + . . scaffold38194 GLEAN mRNA 27770 27819 0.999182 - . ID=CGI_10002658; scaffold38194 TRF Tandem_Repeat 27770 27819 100 + . . scaffold38196 GLEAN mRNA 11325 11382 0.999114 - . ID=CGI_10002666; scaffold38196 TRF Tandem_Repeat 11325 11382 116 + . . scaffold38196 GLEAN mRNA 18757 18960 0.998466 - . ID=CGI_10002667; scaffold38196 TRF Tandem_Repeat 18757 18960 273 + . . scaffold1727 GLEAN mRNA 30639 31884 0.635377 + . ID=CGI_10002672; scaffold1727 TRF Tandem_Repeat 30639 31884 1772 + . . scaffold1727 GLEAN mRNA 33105 33150 0.635377 + . ID=CGI_10002672; scaffold1727 TRF Tandem_Repeat 33105 33150 57 + . . scaffold1727 GLEAN mRNA 33108 33149 0.635377 + . ID=CGI_10002672; scaffold1727 TRF Tandem_Repeat 33108 33149 50 + . . scaffold1727 GLEAN mRNA 35544 35578 0.635377 + . ID=CGI_10002672; scaffold1727 TRF Tandem_Repeat 35544 35578 52 + . . scaffold1727 GLEAN mRNA 35548 35582 0.635377 + . ID=CGI_10002672; scaffold1727 TRF Tandem_Repeat 35548 35582 61 + . . scaffold1727 GLEAN mRNA 39088 39141 0.635377 + . ID=CGI_10002672; scaffold1727 TRF Tandem_Repeat 39088 39141 74 + . . scaffold1727 GLEAN mRNA 40711 40780 0.635377 + . ID=CGI_10002672; scaffold1727 TRF Tandem_Repeat 40711 40780 52 + . . scaffold1727 GLEAN mRNA 42720 42770 0.635377 + . ID=CGI_10002672; scaffold1727 TRF Tandem_Repeat 42720 42770 66 + . . scaffold1727 GLEAN mRNA 41839 42657 0.635377 + . ID=CGI_10002672; scaffold1727 WUBlastX RC_Helitron 41839 42657 213 - . . scaffold1727 GLEAN mRNA 41698 42663 0.635377 + . ID=CGI_10002672; scaffold1727 WUBlastX RC_Helitron 41698 42663 125 - . . scaffold1727 GLEAN mRNA 37442 38917 0.635377 + . ID=CGI_10002672; scaffold1727 WUBlastX DNA_hAT-hATw 37442 38917 184 + . . scaffold38210 GLEAN mRNA 15896 15958 0.24289 - . ID=CGI_10002673; scaffold38210 TRF Tandem_Repeat 15896 15958 65 + . . scaffold38210 GLEAN mRNA 15896 15937 0.24289 - . ID=CGI_10002673; scaffold38210 TRF Tandem_Repeat 15896 15937 57 + . . scaffold38210 GLEAN mRNA 15896 15954 0.24289 - . ID=CGI_10002673; scaffold38210 TRF Tandem_Repeat 15896 15954 64 + . . scaffold38210 GLEAN mRNA 18451 18500 0.24289 - . ID=CGI_10002673; scaffold38210 TRF Tandem_Repeat 18451 18500 100 + . . scaffold38210 GLEAN mRNA 22348 22920 0.24289 - . ID=CGI_10002673; scaffold38210 WUBlastX LINE_L1 22348 22920 209 + . . scaffold38210 GLEAN mRNA 24452 24586 0.24289 - . ID=CGI_10002673; scaffold38210 WUBlastX LINE_Jockey 24452 24586 32 + . . scaffold38210 GLEAN mRNA 22874 23455 0.24289 - . ID=CGI_10002673; scaffold38210 WUBlastX LINE_L2 22874 23455 31 + . . scaffold38210 GLEAN mRNA 22291 22977 0.24289 - . ID=CGI_10002673; scaffold38210 WUBlastX LINE_L2 22291 22977 110 + . . scaffold38210 GLEAN mRNA 23150 23869 0.24289 - . ID=CGI_10002673; scaffold38210 WUBlastX LINE_RTE-X 23150 23869 144 + . . scaffold38210 GLEAN mRNA 24588 24764 0.24289 - . ID=CGI_10002673; scaffold38210 WUBlastX LINE_RTE-X 24588 24764 140 + . . scaffold38210 GLEAN mRNA 24776 25924 0.24289 - . ID=CGI_10002673; scaffold38210 WUBlastX LINE_RTE-X 24776 25924 305 + . . scaffold38210 GLEAN mRNA 23552 24565 0.24289 - . ID=CGI_10002673; scaffold38210 WUBlastX LINE_RTE-X 23552 24565 158 + . . scaffold38210 GLEAN mRNA 44192 44710 0.810408 - . ID=CGI_10002675; scaffold38210 WUBlastX LTR_Pao 44192 44710 28 - . . scaffold38152 GLEAN mRNA 10532 10571 0.999993 - . ID=CGI_10002678; scaffold38152 TRF Tandem_Repeat 10532 10571 53 + . . scaffold38152 GLEAN mRNA 11162 11240 0.999993 - . ID=CGI_10002678; scaffold38152 TRF Tandem_Repeat 11162 11240 67 + . . scaffold38152 GLEAN mRNA 11174 11230 0.999993 - . ID=CGI_10002678; scaffold38152 TRF Tandem_Repeat 11174 11230 69 + . . scaffold38152 GLEAN mRNA 11162 11230 0.999993 - . ID=CGI_10002678; scaffold38152 TRF Tandem_Repeat 11162 11230 84 + . . scaffold38152 GLEAN mRNA 6752 9220 0.999993 - . ID=CGI_10002678; scaffold38152 WUBlastX DNA_hAT-hATw 6752 9220 104 - . . scaffold38152 GLEAN mRNA 6737 8071 0.999993 - . ID=CGI_10002678; scaffold38152 WUBlastX DNA_hAT-hATw 6737 8071 152 - . . scaffold1226 GLEAN mRNA 17071 17200 0.702385 + . ID=CGI_10002681; scaffold1226 TRF Tandem_Repeat 17071 17200 66 + . . scaffold1226 GLEAN mRNA 16992 17201 0.702385 + . ID=CGI_10002681; scaffold1226 TRF Tandem_Repeat 16992 17201 171 + . . scaffold1226 GLEAN mRNA 19890 20225 0.702385 + . ID=CGI_10002681; scaffold1226 WUBlastX DNA_Crypton 19890 20225 99 + . . scaffold1226 GLEAN mRNA 37139 37153 0.999547 - . ID=CGI_10002682; scaffold1226 WUBlastX DNA_hAT-Tip100 37139 37384 45 - . . scaffold38298 GLEAN mRNA 48226 48296 0.99993 + . ID=CGI_10002689; scaffold38298 TRF Tandem_Repeat 48226 48296 133 + . . scaffold38298 GLEAN mRNA 48963 49133 0.99993 + . ID=CGI_10002689; scaffold38298 TRF Tandem_Repeat 48963 49133 102 + . . scaffold38292 GLEAN mRNA 4151 4216 0.531558 + . ID=CGI_10002690; scaffold38292 TRF Tandem_Repeat 4151 4216 132 + . . scaffold38292 GLEAN mRNA 4411 4452 0.531558 + . ID=CGI_10002690; scaffold38292 TRF Tandem_Repeat 4411 4452 66 + . . scaffold38292 GLEAN mRNA 34942 35952 0.771739 - . ID=CGI_10002691; scaffold38292 WUBlastX LTR_Ngaro 34942 35952 521 - . . scaffold38292 GLEAN mRNA 35916 36203 0.771739 - . ID=CGI_10002691; scaffold38292 WUBlastX LTR_Ngaro 35916 36203 171 - . . scaffold38292 GLEAN mRNA 34155 34910 0.771739 - . ID=CGI_10002691; scaffold38292 WUBlastX LTR_Ngaro 34155 34910 265 - . . scaffold38292 GLEAN mRNA 36200 36442 0.771739 - . ID=CGI_10002691; scaffold38292 WUBlastX LTR_Ngaro 36200 36442 43 - . . scaffold38292 GLEAN mRNA 34026 34916 0.771739 - . ID=CGI_10002691; scaffold38292 WUBlastX LTR_Ngaro 34026 34916 222 - . . scaffold38292 GLEAN mRNA 46431 47681 0.696819 + . ID=CGI_10002692; scaffold38292 WUBlastX LTR_Gypsy 46431 47681 118 + . . scaffold38292 GLEAN mRNA 46434 47066 0.696819 + . ID=CGI_10002692; scaffold38292 WUBlastX LTR_Gypsy-Cigr 46434 47066 170 + . . scaffold38292 GLEAN mRNA 46272 46946 0.696819 + . ID=CGI_10002692; scaffold38292 WUBlastX LTR_Gypsy 46272 46946 72 + . . scaffold38292 GLEAN mRNA 46449 47204 0.696819 + . ID=CGI_10002692; scaffold38292 WUBlastX LTR_Gypsy 46449 47204 130 + . . scaffold38292 GLEAN mRNA 46410 46913 0.696819 + . ID=CGI_10002692; scaffold38292 WUBlastX LTR_Gypsy-Cigr 46410 46913 190 + . . scaffold38292 GLEAN mRNA 47397 47750 0.696819 + . ID=CGI_10002692; scaffold38292 WUBlastX LTR_Gypsy 47397 47750 88 + . . scaffold38272 GLEAN mRNA 13883 14786 0.605388 + . ID=CGI_10002702; scaffold38272 TRF Tandem_Repeat 13883 14786 1274 + . . scaffold38272 GLEAN mRNA 12145 12726 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LTR_Gypsy 12145 12726 27 + . . scaffold38272 GLEAN mRNA 27369 27420 0.605388 + . ID=CGI_10002702; scaffold38272 TRF Tandem_Repeat 27369 27420 68 + . . scaffold38272 GLEAN mRNA 31161 31195 0.605388 + . ID=CGI_10002702; scaffold38272 TRF Tandem_Repeat 31161 31195 52 + . . scaffold38272 GLEAN mRNA 31790 32427 0.605388 + . ID=CGI_10002702; scaffold38272 TRF Tandem_Repeat 31790 32427 767 + . . scaffold38272 GLEAN mRNA 43342 43399 0.605388 + . ID=CGI_10002702; scaffold38272 TRF Tandem_Repeat 43342 43399 73 + . . scaffold38272 GLEAN mRNA 43343 43399 0.605388 + . ID=CGI_10002702; scaffold38272 TRF Tandem_Repeat 43343 43399 55 + . . scaffold38272 GLEAN mRNA 39386 39784 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LINE_L1 39386 39784 44 + . . scaffold38272 GLEAN mRNA 39118 39321 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LINE_L1-Tx1 39118 39321 24 + . . scaffold38272 GLEAN mRNA 39551 39787 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LINE_L1-Tx1 39551 39787 104 + . . scaffold38272 GLEAN mRNA 38746 38937 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LINE_L1-Tx1 38746 38937 28 + . . scaffold38272 GLEAN mRNA 37953 38063 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LINE_L1-Tx1 37953 38063 38 + . . scaffold38272 GLEAN mRNA 39449 39856 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LINE_L1 39449 39856 89 + . . scaffold38272 GLEAN mRNA 37974 38510 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LINE_L1-Tx1 37974 38510 119 + . . scaffold38272 GLEAN mRNA 38465 38749 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LINE_L1-Tx1 38465 38749 98 + . . scaffold38272 GLEAN mRNA 48314 48436 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LINE_L1-Tx1 48314 48436 26 + . . scaffold38272 GLEAN mRNA 51317 51619 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LINE_L1 51317 51619 53 + . . scaffold38272 GLEAN mRNA 51377 51619 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LINE_L1-Tx1 51377 51619 68 + . . scaffold38274 GLEAN mRNA 28939 28986 0.512325 + . ID=CGI_10002704; scaffold38274 TRF Tandem_Repeat 28939 28986 51 + . . scaffold38274 GLEAN mRNA 29377 29446 0.512325 + . ID=CGI_10002704; scaffold38274 TRF Tandem_Repeat 29377 29446 131 + . . scaffold38274 GLEAN mRNA 36309 36399 0.512325 + . ID=CGI_10002704; scaffold38274 TRF Tandem_Repeat 36309 36399 164 + . . scaffold38274 GLEAN mRNA 39346 39412 0.512325 + . ID=CGI_10002704; scaffold38274 TRF Tandem_Repeat 39346 39412 62 + . . scaffold38274 GLEAN mRNA 41789 41848 0.512325 + . ID=CGI_10002704; scaffold38274 TRF Tandem_Repeat 41789 41848 111 + . . scaffold38274 GLEAN mRNA 48446 48503 0.512325 + . ID=CGI_10002704; scaffold38274 TRF Tandem_Repeat 48446 48503 82 + . . scaffold38274 GLEAN mRNA 16103 16576 0.512325 + . ID=CGI_10002704; scaffold38274 WUBlastX LINE_L1 16082 16576 69 + . . scaffold38274 GLEAN mRNA 16325 16621 0.512325 + . ID=CGI_10002704; scaffold38274 WUBlastX LINE_RTE-X 16325 16621 50 + . . scaffold38290 GLEAN mRNA 37450 37474 0.999949 + . ID=CGI_10002705; scaffold38290 TRF Tandem_Repeat 37450 37474 50 + . . scaffold38290 GLEAN mRNA 43097 43134 0.999949 + . ID=CGI_10002705; scaffold38290 TRF Tandem_Repeat 43097 43134 76 + . . scaffold38348 GLEAN mRNA 13055 13097 0.999676 - . ID=CGI_10002707; scaffold38348 TRF Tandem_Repeat 13055 13097 68 + . . scaffold38348 GLEAN mRNA 25592 25664 0.999676 - . ID=CGI_10002707; scaffold38348 TRF Tandem_Repeat 25592 25664 119 + . . scaffold38348 GLEAN mRNA 25744 25795 0.999676 - . ID=CGI_10002707; scaffold38348 TRF Tandem_Repeat 25744 25795 77 + . . scaffold38348 GLEAN mRNA 44515 44631 0.999415 + . ID=CGI_10002708; scaffold38348 TRF Tandem_Repeat 44515 44631 139 + . . scaffold38348 GLEAN mRNA 44869 45240 0.999415 + . ID=CGI_10002708; scaffold38348 TRF Tandem_Repeat 44869 45240 564 + . . scaffold38306 GLEAN mRNA 6325 6369 0.99842 - . ID=CGI_10002711; scaffold38306 WUBlastX LINE_L1 6325 6369 31 + . . scaffold38306 GLEAN mRNA 8854 9009 0.99842 - . ID=CGI_10002711; scaffold38306 WUBlastX DNA_Harbinger 8854 9009 100 - . . scaffold38306 GLEAN mRNA 6312 6377 0.99842 - . ID=CGI_10002711; scaffold38306 WUBlastX LINE_L1 6312 6377 25 + . . scaffold38306 GLEAN mRNA 7154 7537 0.99842 - . ID=CGI_10002711; scaffold38306 WUBlastX LINE_L1 7154 7537 62 + . . scaffold38306 GLEAN mRNA 7256 7525 0.99842 - . ID=CGI_10002711; scaffold38306 WUBlastX LINE_L1-Tx1 7256 7525 192 + . . scaffold38306 GLEAN mRNA 10233 10745 0.99842 - . ID=CGI_10002711; scaffold38306 WUBlastX DNA_Harbinger 10233 10745 89 - . . scaffold38306 GLEAN mRNA 7256 7615 0.99842 - . ID=CGI_10002711; scaffold38306 WUBlastX LINE_L1-Tx1 7256 7615 86 + . . scaffold38306 GLEAN mRNA 47094 47124 0.996569 + . ID=CGI_10002714; scaffold38306 TRF Tandem_Repeat 47094 47124 53 + . . scaffold93 GLEAN mRNA 1754 2139 1 - . ID=CGI_10002717; scaffold93 TRF Tandem_Repeat 1754 2139 335 + . . scaffold93 GLEAN mRNA 6375 6429 1 - . ID=CGI_10002717; scaffold93 TRF Tandem_Repeat 6375 6429 85 + . . scaffold93 GLEAN mRNA 17189 18688 0.999695 + . ID=CGI_10002718; scaffold93 WUBlastX DNA_Kolobok 17189 18688 547 + . . scaffold38354 GLEAN mRNA 24939 25027 0.931314 - . ID=CGI_10002723; scaffold38354 TRF Tandem_Repeat 24939 25027 106 + . . scaffold38354 GLEAN mRNA 25054 25191 0.931314 - . ID=CGI_10002723; scaffold38354 TRF Tandem_Repeat 25054 25191 107 + . . scaffold38354 GLEAN mRNA 24939 25027 1 + . ID=CGI_10002724; scaffold38354 TRF Tandem_Repeat 24939 25027 106 + . . scaffold38354 GLEAN mRNA 25054 25191 1 + . ID=CGI_10002724; scaffold38354 TRF Tandem_Repeat 25054 25191 107 + . . scaffold38354 GLEAN mRNA 37479 37551 1 + . ID=CGI_10002726; scaffold38354 TRF Tandem_Repeat 37479 37551 58 + . . scaffold38364 GLEAN mRNA 13500 14330 0.986568 + . ID=CGI_10002730; scaffold38364 WUBlastX LTR_Gypsy 13500 14330 42 + . . scaffold38364 GLEAN mRNA 13620 14162 0.986568 + . ID=CGI_10002730; scaffold38364 WUBlastX LTR_Gypsy 13620 14162 65 + . . scaffold38364 GLEAN mRNA 13434 13979 0.986568 + . ID=CGI_10002730; scaffold38364 WUBlastX LTR_Gypsy 13434 13979 43 + . . scaffold38364 GLEAN mRNA 13569 13922 0.986568 + . ID=CGI_10002730; scaffold38364 WUBlastX LTR_Gypsy 13569 13922 71 + . . scaffold38376 GLEAN mRNA 37072 37110 0.629856 + . ID=CGI_10002735; scaffold38376 TRF Tandem_Repeat 37072 37110 51 + . . scaffold38370 GLEAN mRNA 9628 9660 0.987276 + . ID=CGI_10002738; scaffold38370 TRF Tandem_Repeat 9628 9660 66 + . . scaffold38370 GLEAN mRNA 28268 28336 0.974401 - . ID=CGI_10002740; scaffold38370 TRF Tandem_Repeat 28268 28336 138 + . . scaffold38374 GLEAN mRNA 14792 15484 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Gypsy-Cigr 14792 15484 209 + . . scaffold38374 GLEAN mRNA 14630 15463 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Gypsy 14630 15463 50 + . . scaffold38374 GLEAN mRNA 14130 14639 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Gypsy 14130 14639 64 + . . scaffold38374 GLEAN mRNA 15058 16221 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Gypsy 15058 16221 453 + . . scaffold38374 GLEAN mRNA 13896 14594 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Gypsy 13896 14594 26 + . . scaffold38374 GLEAN mRNA 8302 8436 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Ngaro 8113 8436 65 + . . scaffold38374 GLEAN mRNA 14043 14606 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Gypsy 14043 14606 43 + . . scaffold38374 GLEAN mRNA 8427 8516 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Ngaro 8427 8516 26 + . . scaffold38374 GLEAN mRNA 16404 17153 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Gypsy 16404 17153 441 + . . scaffold38374 GLEAN mRNA 17159 17557 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Gypsy-Cigr 17159 17557 97 + . . scaffold38374 GLEAN mRNA 16215 17153 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Gypsy 16215 17153 288 + . . scaffold38372 GLEAN mRNA 8564 9829 0.799743 - . ID=CGI_10002748; scaffold38372 TRF Tandem_Repeat 8564 9829 1984 + . . scaffold38372 GLEAN mRNA 10070 10276 0.799743 - . ID=CGI_10002748; scaffold38372 TRF Tandem_Repeat 10070 10276 360 + . . scaffold38382 GLEAN mRNA 22711 22786 0.999676 + . ID=CGI_10002755; scaffold38382 TRF Tandem_Repeat 22711 22786 152 + . . scaffold1760 GLEAN mRNA 14675 15869 0.994763 + . ID=CGI_10002757; scaffold1760 TRF Tandem_Repeat 14675 15869 1096 + . . scaffold1760 GLEAN mRNA 14675 15869 0.994763 + . ID=CGI_10002757; scaffold1760 TRF Tandem_Repeat 14675 15869 1489 + . . scaffold1760 GLEAN mRNA 14675 15869 0.994763 + . ID=CGI_10002757; scaffold1760 TRF Tandem_Repeat 14675 15869 1580 + . . scaffold1760 GLEAN mRNA 20146 20966 0.994763 + . ID=CGI_10002757; scaffold1760 TRF Tandem_Repeat 20146 20966 947 + . . scaffold1760 GLEAN mRNA 20146 20966 0.994763 + . ID=CGI_10002757; scaffold1760 TRF Tandem_Repeat 20146 20966 1104 + . . scaffold1760 GLEAN mRNA 25393 25434 0.994763 + . ID=CGI_10002757; scaffold1760 TRF Tandem_Repeat 25393 25434 84 + . . scaffold1760 GLEAN mRNA 32117 32169 0.994763 + . ID=CGI_10002757; scaffold1760 TRF Tandem_Repeat 32117 32169 106 + . . scaffold1760 GLEAN mRNA 35617 35811 0.994763 + . ID=CGI_10002757; scaffold1760 WUBlastX LINE_L1-Tx1 35617 35811 81 + . . scaffold1760 GLEAN mRNA 35437 35811 0.994763 + . ID=CGI_10002757; scaffold1760 WUBlastX LINE_L1-Tx1 35437 35811 72 + . . scaffold38400 GLEAN mRNA 37145 37321 0.651101 - . ID=CGI_10002763; scaffold38400 TRF Tandem_Repeat 37145 37321 70 + . . scaffold38400 GLEAN mRNA 38269 38294 0.651101 - . ID=CGI_10002763; scaffold38400 TRF Tandem_Repeat 38269 38294 52 + . . scaffold38400 GLEAN mRNA 40854 40907 0.651101 - . ID=CGI_10002763; scaffold38400 TRF Tandem_Repeat 40854 40907 99 + . . scaffold38422 GLEAN mRNA 30422 30562 0.999996 - . ID=CGI_10002764; scaffold38422 WUBlastX LINE_CR1 30422 30562 51 - . . scaffold38422 GLEAN mRNA 30413 30538 0.999996 - . ID=CGI_10002764; scaffold38422 WUBlastX LINE_CR1 30413 30538 80 - . . scaffold38422 GLEAN mRNA 30419 30601 0.999996 - . ID=CGI_10002764; scaffold38422 WUBlastX LINE_CR1 30419 30601 40 - . . scaffold38422 GLEAN mRNA 30377 30535 0.999996 - . ID=CGI_10002764; scaffold38422 WUBlastX LINE_L2 30377 30535 46 - . . scaffold38422 GLEAN mRNA 39792 39828 0.998116 - . ID=CGI_10002766; scaffold38422 TRF Tandem_Repeat 39792 39828 74 + . . scaffold38422 GLEAN mRNA 41074 41119 0.998116 - . ID=CGI_10002766; scaffold38422 TRF Tandem_Repeat 41074 41119 92 + . . scaffold38438 GLEAN mRNA 54086 54214 0.618241 - . ID=CGI_10002770; scaffold38438 WUBlastX DNA_TcMar-Marin 54086 54214 48 - . . scaffold38438 GLEAN mRNA 54107 54235 0.618241 - . ID=CGI_10002770; scaffold38438 WUBlastX DNA_TcMar-Marin 54107 54250 70 - . . scaffold38480 GLEAN mRNA 52831 53205 1 - . ID=CGI_10002772; scaffold38480 WUBlastX LTR_Ngaro 52831 53943 204 - . . scaffold38480 GLEAN mRNA 52810 52841 1 - . ID=CGI_10002772; scaffold38480 WUBlastX LTR_Ngaro 52602 52841 80 - . . scaffold38448 GLEAN mRNA 36643 36682 0.999937 + . ID=CGI_10002779; scaffold38448 TRF Tandem_Repeat 36643 36682 80 + . . scaffold38448 GLEAN mRNA 33487 34740 0.999937 + . ID=CGI_10002779; scaffold38448 WUBlastX LTR_Ngaro 33487 34740 144 - . . scaffold38448 GLEAN mRNA 34755 34985 0.999937 + . ID=CGI_10002779; scaffold38448 WUBlastX LTR_Ngaro 34755 34985 62 - . . scaffold38448 GLEAN mRNA 34755 34898 0.999937 + . ID=CGI_10002779; scaffold38448 WUBlastX LTR_Ngaro 34755 34898 68 - . . scaffold38448 GLEAN mRNA 32634 33083 0.999937 + . ID=CGI_10002779; scaffold38448 WUBlastX LTR_Ngaro 32634 33083 108 - . . scaffold38458 GLEAN mRNA 32379 32478 0.996054 - . ID=CGI_10002783; scaffold38458 TRF Tandem_Repeat 32379 32478 110 + . . scaffold38458 GLEAN mRNA 36430 36485 0.996054 - . ID=CGI_10002783; scaffold38458 TRF Tandem_Repeat 36430 36485 112 + . . scaffold38458 GLEAN mRNA 40688 40738 0.996054 - . ID=CGI_10002783; scaffold38458 TRF Tandem_Repeat 40688 40738 50 + . . scaffold38458 GLEAN mRNA 41193 41226 0.996054 - . ID=CGI_10002783; scaffold38458 TRF Tandem_Repeat 41193 41226 50 + . . scaffold38458 GLEAN mRNA 45492 45540 0.996054 - . ID=CGI_10002783; scaffold38458 TRF Tandem_Repeat 45492 45540 55 + . . scaffold38458 GLEAN mRNA 40688 40738 0.84332 + . ID=CGI_10002784; scaffold38458 TRF Tandem_Repeat 40688 40738 50 + . . scaffold38458 GLEAN mRNA 41193 41226 0.84332 + . ID=CGI_10002784; scaffold38458 TRF Tandem_Repeat 41193 41226 50 + . . scaffold38458 GLEAN mRNA 45492 45540 0.84332 + . ID=CGI_10002784; scaffold38458 TRF Tandem_Repeat 45492 45540 55 + . . scaffold38458 GLEAN mRNA 52861 53226 0.84332 + . ID=CGI_10002784; scaffold38458 WUBlastX DNA_Harbinger 52861 53226 123 + . . scaffold38458 GLEAN mRNA 53846 53965 0.84332 + . ID=CGI_10002784; scaffold38458 WUBlastX DNA_Harbinger 53846 53965 107 + . . scaffold38458 GLEAN mRNA 53837 53986 0.84332 + . ID=CGI_10002784; scaffold38458 WUBlastX DNA_Harbinger 53837 53986 64 + . . scaffold38458 GLEAN mRNA 52840 53298 0.84332 + . ID=CGI_10002784; scaffold38458 WUBlastX DNA_Harbinger 52840 53298 107 + . . scaffold38458 GLEAN mRNA 55758 56000 0.84332 + . ID=CGI_10002784; scaffold38458 WUBlastX LINE_L2 55758 56003 29 + . . scaffold38458 GLEAN mRNA 56099 56269 0.999372 + . ID=CGI_10002785; scaffold38458 WUBlastX LINE_CR1-L2 56099 56332 51 + . . scaffold38458 GLEAN mRNA 56051 56269 0.999372 + . ID=CGI_10002785; scaffold38458 WUBlastX LINE_CR1-L2 56006 56308 22 + . . scaffold38464 GLEAN mRNA 32260 32370 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 32260 32370 20 - . . scaffold38464 GLEAN mRNA 30440 30691 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 30440 30691 156 - . . scaffold38464 GLEAN mRNA 31194 31346 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 31194 31346 87 - . . scaffold38464 GLEAN mRNA 30697 31179 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 30697 31179 224 - . . scaffold38464 GLEAN mRNA 29156 29284 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LINE_RTE-X 28967 29284 88 - . . scaffold38464 GLEAN mRNA 29156 29329 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LINE_CR1 28925 29329 73 - . . scaffold38464 GLEAN mRNA 31268 31753 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 31268 31753 337 - . . scaffold38464 GLEAN mRNA 31738 31998 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 31738 31998 89 - . . scaffold38464 GLEAN mRNA 29526 30398 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 29526 30398 454 - . . scaffold38464 GLEAN mRNA 32323 32370 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 32323 32370 22 - . . scaffold38464 GLEAN mRNA 32366 32746 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 32366 32746 153 - . . scaffold1376 GLEAN mRNA 15590 15757 0.523289 - . ID=CGI_10002794; scaffold1376 WUBlastX LINE_L2 15590 15757 61 + . . scaffold1376 GLEAN mRNA 15775 16107 0.523289 - . ID=CGI_10002794; scaffold1376 WUBlastX LINE_L2 15775 16107 129 + . . scaffold1376 GLEAN mRNA 15557 15760 0.523289 - . ID=CGI_10002794; scaffold1376 WUBlastX LINE_CR1-L2 15557 15760 32 + . . scaffold1376 GLEAN mRNA 17259 17308 0.523289 - . ID=CGI_10002794; scaffold1376 TRF Tandem_Repeat 17259 17308 100 + . . scaffold1376 GLEAN mRNA 40654 40702 0.502849 - . ID=CGI_10002795; scaffold1376 TRF Tandem_Repeat 40654 40702 53 + . . scaffold1376 GLEAN mRNA 46029 46072 0.502849 - . ID=CGI_10002795; scaffold1376 TRF Tandem_Repeat 46029 46072 88 + . . scaffold1376 GLEAN mRNA 48156 48189 0.502849 - . ID=CGI_10002795; scaffold1376 TRF Tandem_Repeat 48156 48189 50 + . . scaffold1376 GLEAN mRNA 44465 44611 0.502849 - . ID=CGI_10002795; scaffold1376 WUBlastX LINE_L1-Tx1 44465 44611 111 - . . scaffold1376 GLEAN mRNA 45442 45498 0.502849 - . ID=CGI_10002795; scaffold1376 WUBlastX LINE_R2 45442 45498 24 - . . scaffold1376 GLEAN mRNA 42742 44460 0.502849 - . ID=CGI_10002795; scaffold1376 WUBlastX LINE_L1-Tx1 42742 44460 429 - . . scaffold1376 GLEAN mRNA 44462 44647 0.502849 - . ID=CGI_10002795; scaffold1376 WUBlastX LINE_L1 44462 44647 108 - . . scaffold1376 GLEAN mRNA 42655 42720 0.502849 - . ID=CGI_10002795; scaffold1376 WUBlastX LINE_L1 42655 42720 20 - . . scaffold1376 GLEAN mRNA 44465 44689 0.502849 - . ID=CGI_10002795; scaffold1376 WUBlastX LINE_L1 44465 44689 46 - . . scaffold1376 GLEAN mRNA 49687 49724 0.502849 - . ID=CGI_10002795; scaffold1376 TRF Tandem_Repeat 49687 49724 58 + . . scaffold1376 GLEAN mRNA 52004 52187 0.502849 - . ID=CGI_10002795; scaffold1376 TRF Tandem_Repeat 52004 52187 172 + . . scaffold38466 GLEAN mRNA 3620 3688 0.999675 + . ID=CGI_10002797; scaffold38466 WUBlastX DNA_Kolobok-Hyd 3620 3688 23 + . . scaffold38466 GLEAN mRNA 3880 4548 0.999675 + . ID=CGI_10002797; scaffold38466 WUBlastX DNA_Kolobok-Hyd 3880 4548 37 + . . scaffold38466 GLEAN mRNA 3170 3319 0.999675 + . ID=CGI_10002797; scaffold38466 WUBlastX DNA_Kolobok-Hyd 3161 3319 21 + . . scaffold38466 GLEAN mRNA 3590 3655 0.999675 + . ID=CGI_10002797; scaffold38466 WUBlastX DNA_Kolobok-Hyd 3590 3655 26 + . . scaffold38466 GLEAN mRNA 28697 28733 0.999027 + . ID=CGI_10002798; scaffold38466 TRF Tandem_Repeat 28697 28733 74 + . . scaffold38466 GLEAN mRNA 16442 16645 0.999027 + . ID=CGI_10002798; scaffold38466 WUBlastX DNA_Zator 16442 16645 66 - . . scaffold38466 GLEAN mRNA 16782 16874 0.999027 + . ID=CGI_10002798; scaffold38466 WUBlastX DNA_Zator 16782 16874 25 - . . scaffold38492 GLEAN mRNA 22752 23627 0.777277 - . ID=CGI_10002800; scaffold38492 WUBlastX DNA_TcMar-Tc2 22752 23627 214 - . . scaffold38492 GLEAN mRNA 22584 23594 0.777277 - . ID=CGI_10002800; scaffold38492 WUBlastX DNA_TcMar-Tc2 22584 23594 202 - . . scaffold38494 GLEAN mRNA 11920 12131 0.992441 + . ID=CGI_10002806; scaffold38494 TRF Tandem_Repeat 11920 12131 243 + . . scaffold38494 GLEAN mRNA 21779 21829 0.992441 + . ID=CGI_10002806; scaffold38494 TRF Tandem_Repeat 21779 21829 102 + . . scaffold38494 GLEAN mRNA 31861 31910 0.992441 + . ID=CGI_10002806; scaffold38494 TRF Tandem_Repeat 31861 31910 100 + . . scaffold38494 GLEAN mRNA 35930 37072 0.992441 + . ID=CGI_10002806; scaffold38494 TRF Tandem_Repeat 35930 37072 1531 + . . scaffold38494 GLEAN mRNA 40828 40883 0.992441 + . ID=CGI_10002806; scaffold38494 TRF Tandem_Repeat 40828 40883 112 + . . scaffold38494 GLEAN mRNA 44974 45103 0.992441 + . ID=CGI_10002806; scaffold38494 TRF Tandem_Repeat 44974 45103 156 + . . scaffold38494 GLEAN mRNA 54841 55077 0.992441 + . ID=CGI_10002806; scaffold38494 WUBlastX LINE_L2 54841 55077 75 + . . scaffold38494 GLEAN mRNA 54802 55128 0.992441 + . ID=CGI_10002806; scaffold38494 WUBlastX LINE_L2 54802 55128 61 + . . scaffold1756 GLEAN mRNA 4989 5016 1 + . ID=CGI_10002807; scaffold1756 TRF Tandem_Repeat 4989 5016 56 + . . scaffold38510 GLEAN mRNA 7560 7611 0.242516 - . ID=CGI_10002810; scaffold38510 TRF Tandem_Repeat 7560 7611 79 + . . scaffold38510 GLEAN mRNA 15417 15518 0.242516 - . ID=CGI_10002810; scaffold38510 TRF Tandem_Repeat 15417 15518 59 + . . scaffold38510 GLEAN mRNA 15411 15519 0.242516 - . ID=CGI_10002810; scaffold38510 TRF Tandem_Repeat 15411 15519 85 + . . scaffold38510 GLEAN mRNA 18479 18528 0.242516 - . ID=CGI_10002810; scaffold38510 TRF Tandem_Repeat 18479 18528 100 + . . scaffold38510 GLEAN mRNA 20028 20267 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 20028 20267 99 - . . scaffold38510 GLEAN mRNA 20690 20794 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 20690 20794 24 - . . scaffold38510 GLEAN mRNA 20636 20773 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 20636 20773 35 - . . scaffold38510 GLEAN mRNA 19997 20395 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 19997 20395 35 - . . scaffold38510 GLEAN mRNA 20678 20854 0.242516 - . ID=CGI_10002810; scaffold38510 WUBlastX DNA_TcMar-Tc1 20678 20854 22 - . . scaffold38510 GLEAN mRNA 18479 18528 0.996228 + . ID=CGI_10002811; scaffold38510 TRF Tandem_Repeat 18479 18528 100 + . . scaffold38510 GLEAN mRNA 22945 23315 0.996228 + . ID=CGI_10002811; scaffold38510 TRF Tandem_Repeat 22945 23315 442 + . . scaffold38510 GLEAN mRNA 24031 24559 0.996228 + . ID=CGI_10002811; scaffold38510 TRF Tandem_Repeat 24031 24559 637 + . . scaffold38510 GLEAN mRNA 24031 24559 0.996228 + . ID=CGI_10002811; scaffold38510 TRF Tandem_Repeat 24031 24559 683 + . . scaffold38510 GLEAN mRNA 24013 24559 0.996228 + . ID=CGI_10002811; scaffold38510 TRF Tandem_Repeat 24013 24559 671 + . . scaffold38510 GLEAN mRNA 20028 20267 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_TcMar-Tc1 20028 20267 99 - . . scaffold38510 GLEAN mRNA 24590 24946 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 24590 24946 43 + . . scaffold38510 GLEAN mRNA 20690 20794 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_TcMar-Tc1 20690 20794 24 - . . scaffold38510 GLEAN mRNA 31148 31480 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 31148 31480 120 + . . scaffold38510 GLEAN mRNA 20636 20773 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_TcMar-Tc1 20636 20773 35 - . . scaffold38510 GLEAN mRNA 28327 28410 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 28327 28410 28 + . . scaffold38510 GLEAN mRNA 28534 28995 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 28534 28995 23 + . . scaffold38510 GLEAN mRNA 29349 29459 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 29349 29459 22 + . . scaffold38510 GLEAN mRNA 27743 27997 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 27743 27997 86 + . . scaffold38510 GLEAN mRNA 28684 28986 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 28684 28986 131 + . . scaffold38510 GLEAN mRNA 30674 30877 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 30674 30877 136 + . . scaffold38510 GLEAN mRNA 30638 30829 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 30638 30829 46 + . . scaffold38510 GLEAN mRNA 29367 29462 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 29367 29462 24 + . . scaffold38510 GLEAN mRNA 19997 20395 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_TcMar-Tc1 19997 20395 35 - . . scaffold38510 GLEAN mRNA 29630 29857 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 29630 29857 41 + . . scaffold38510 GLEAN mRNA 31622 32182 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 31622 32182 56 + . . scaffold38510 GLEAN mRNA 30716 30910 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 30716 30910 26 + . . scaffold38510 GLEAN mRNA 30058 30306 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 30058 30306 171 + . . scaffold38510 GLEAN mRNA 31742 32158 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_Sola 31742 32158 120 + . . scaffold38510 GLEAN mRNA 20678 20854 0.996228 + . ID=CGI_10002811; scaffold38510 WUBlastX DNA_TcMar-Tc1 20678 20854 22 - . . scaffold38498 GLEAN mRNA 25221 25445 1 + . ID=CGI_10002819; scaffold38498 TRF Tandem_Repeat 25221 25445 351 + . . scaffold38498 GLEAN mRNA 26711 27485 1 + . ID=CGI_10002819; scaffold38498 TRF Tandem_Repeat 26711 27485 810 + . . scaffold38498 GLEAN mRNA 26711 27485 1 + . ID=CGI_10002819; scaffold38498 TRF Tandem_Repeat 26711 27485 744 + . . scaffold749 GLEAN mRNA 53718 54248 1 - . ID=CGI_10002827; scaffold749 WUBlastX LINE_RTE-X 53718 54248 110 - . . scaffold749 GLEAN mRNA 53826 54248 1 - . ID=CGI_10002827; scaffold749 WUBlastX LINE_RTE-X 53826 54248 118 - . . scaffold776 GLEAN mRNA 1291 1327 0.92732 + . ID=CGI_10002828; scaffold776 TRF Tandem_Repeat 1291 1327 74 + . . scaffold38558 GLEAN mRNA 23265 23307 0.843588 + . ID=CGI_10002829; scaffold38558 TRF Tandem_Repeat 23265 23307 86 + . . scaffold38558 GLEAN mRNA 25136 25200 0.843588 + . ID=CGI_10002829; scaffold38558 TRF Tandem_Repeat 25136 25200 130 + . . scaffold38558 GLEAN mRNA 34931 34982 0.999624 + . ID=CGI_10002830; scaffold38558 TRF Tandem_Repeat 34931 34982 104 + . . scaffold38558 GLEAN mRNA 34982 35010 0.999624 + . ID=CGI_10002830; scaffold38558 TRF Tandem_Repeat 34982 35010 58 + . . scaffold38532 GLEAN mRNA 50689 50720 0.999998 - . ID=CGI_10002832; scaffold38532 TRF Tandem_Repeat 50689 50720 64 + . . scaffold38532 GLEAN mRNA 55174 55320 0.999998 - . ID=CGI_10002832; scaffold38532 WUBlastX LTR_Ngaro 55174 55320 28 - . . scaffold38532 GLEAN mRNA 54971 55102 0.999998 - . ID=CGI_10002832; scaffold38532 WUBlastX LTR_Ngaro 54971 55102 49 - . . scaffold38532 GLEAN mRNA 55506 56339 0.999998 - . ID=CGI_10002832; scaffold38532 WUBlastX LTR_Ngaro 55506 56339 165 - . . scaffold38532 GLEAN mRNA 55749 56339 0.999998 - . ID=CGI_10002832; scaffold38532 WUBlastX LTR_Ngaro 55749 56339 171 - . . scaffold38532 GLEAN mRNA 56511 56702 0.999998 - . ID=CGI_10002832; scaffold38532 WUBlastX LTR_Ngaro 56511 56702 83 - . . scaffold38532 GLEAN mRNA 56562 56717 0.999998 - . ID=CGI_10002832; scaffold38532 WUBlastX LTR_Ngaro 56562 56717 89 - . . scaffold1091 GLEAN mRNA 2872 3192 0.989308 - . ID=CGI_10002833; scaffold1091 WUBlastX LTR_Gypsy 2746 3192 53 - . . scaffold1091 GLEAN mRNA 21942 22091 0.262738 + . ID=CGI_10002834; scaffold1091 TRF Tandem_Repeat 21942 22091 140 + . . scaffold38546 GLEAN mRNA 47044 47521 0.999997 + . ID=CGI_10002836; scaffold38546 TRF Tandem_Repeat 47044 47521 929 + . . scaffold38552 GLEAN mRNA 40759 41754 0.999674 + . ID=CGI_10002839; scaffold38552 WUBlastX DNA_TcMar-Tc2 40759 41754 179 + . . scaffold38552 GLEAN mRNA 40930 41754 0.999674 + . ID=CGI_10002839; scaffold38552 WUBlastX DNA_TcMar-Tc2 40930 41754 196 + . . scaffold38576 GLEAN mRNA 12907 13633 0.998789 - . ID=CGI_10002841; scaffold38576 TRF Tandem_Repeat 12907 13633 1063 + . . scaffold38576 GLEAN mRNA 16673 16722 0.998789 - . ID=CGI_10002841; scaffold38576 TRF Tandem_Repeat 16673 16722 73 + . . scaffold1701 GLEAN mRNA 2556 2624 0.814164 - . ID=CGI_10002843; scaffold1701 TRF Tandem_Repeat 2556 2624 131 + . . scaffold1549 GLEAN mRNA 8731 8762 0.999526 - . ID=CGI_10002845; scaffold1549 TRF Tandem_Repeat 8731 8762 64 + . . scaffold1549 GLEAN mRNA 11546 11581 0.999526 - . ID=CGI_10002845; scaffold1549 TRF Tandem_Repeat 11546 11581 72 + . . scaffold1549 GLEAN mRNA 7825 8334 0.999526 - . ID=CGI_10002845; scaffold1549 WUBlastX LINE_L1-Tx1 7825 8334 96 + . . scaffold1549 GLEAN mRNA 8336 8719 0.999526 - . ID=CGI_10002845; scaffold1549 WUBlastX LINE_L1-Tx1 8336 8719 33 + . . scaffold1623 GLEAN mRNA 4598 4670 0.211469 + . ID=CGI_10002853; scaffold1623 TRF Tandem_Repeat 4598 4670 128 + . . scaffold1623 GLEAN mRNA 12520 12774 0.211469 + . ID=CGI_10002853; scaffold1623 WUBlastX DNA_Sola 12520 12774 52 - . . scaffold1623 GLEAN mRNA 13035 13094 0.211469 + . ID=CGI_10002853; scaffold1623 WUBlastX DNA_Sola 13035 13094 20 - . . scaffold1623 GLEAN mRNA 9098 9133 0.211469 + . ID=CGI_10002853; scaffold1623 WUBlastX LINE_RTE-BovB 9098 9133 20 - . . scaffold1623 GLEAN mRNA 9382 9417 0.211469 + . ID=CGI_10002853; scaffold1623 WUBlastX LINE_RTE-BovB 9382 9417 20 - . . scaffold1623 GLEAN mRNA 14447 14926 0.211469 + . ID=CGI_10002853; scaffold1623 WUBlastX RC_Helitron 14447 14926 106 + . . scaffold1623 GLEAN mRNA 16030 16191 0.211469 + . ID=CGI_10002853; scaffold1623 WUBlastX DNA_Harbinger 16030 16191 70 - . . scaffold1623 GLEAN mRNA 14528 15409 0.211469 + . ID=CGI_10002853; scaffold1623 WUBlastX RC_Helitron 14528 15409 153 + . . scaffold1623 GLEAN mRNA 8685 9074 0.211469 + . ID=CGI_10002853; scaffold1623 WUBlastX LINE_RTE-BovB 8685 9074 108 - . . scaffold1623 GLEAN mRNA 18198 18987 0.211469 + . ID=CGI_10002853; scaffold1623 TRF Tandem_Repeat 18198 18987 972 + . . scaffold1623 GLEAN mRNA 19018 19085 0.211469 + . ID=CGI_10002853; scaffold1623 TRF Tandem_Repeat 19018 19085 109 + . . scaffold1171 GLEAN mRNA 12481 12726 0.989581 + . ID=CGI_10002857; scaffold1171 WUBlastX LINE_L1-Tx1 12481 12726 98 + . . scaffold1171 GLEAN mRNA 13832 15685 0.989581 + . ID=CGI_10002857; scaffold1171 WUBlastX LINE_L1-Tx1 13832 15685 351 + . . scaffold1171 GLEAN mRNA 12753 14243 0.989581 + . ID=CGI_10002857; scaffold1171 WUBlastX LINE_L1 12753 14243 296 + . . scaffold1171 GLEAN mRNA 12442 12699 0.989581 + . ID=CGI_10002857; scaffold1171 WUBlastX LINE_L1-Tx1 12442 12699 58 + . . scaffold1171 GLEAN mRNA 16286 16510 0.989581 + . ID=CGI_10002857; scaffold1171 WUBlastX LINE_L1-Tx1 16286 16510 23 + . . scaffold1171 GLEAN mRNA 16322 16627 0.989581 + . ID=CGI_10002857; scaffold1171 WUBlastX LINE_L1-Tx1 16322 16627 47 + . . scaffold38568 GLEAN mRNA 4214 4347 0.863123 + . ID=CGI_10002861; scaffold38568 TRF Tandem_Repeat 4214 4347 73 + . . scaffold38568 GLEAN mRNA 4212 4292 0.863123 + . ID=CGI_10002861; scaffold38568 TRF Tandem_Repeat 4212 4292 85 + . . scaffold38568 GLEAN mRNA 4214 4342 0.863123 + . ID=CGI_10002861; scaffold38568 TRF Tandem_Repeat 4214 4342 93 + . . scaffold38568 GLEAN mRNA 4225 4308 0.863123 + . ID=CGI_10002861; scaffold38568 TRF Tandem_Repeat 4225 4308 71 + . . scaffold38568 GLEAN mRNA 4213 4312 0.863123 + . ID=CGI_10002861; scaffold38568 TRF Tandem_Repeat 4213 4312 56 + . . scaffold38568 GLEAN mRNA 7683 7750 0.863123 + . ID=CGI_10002861; scaffold38568 TRF Tandem_Repeat 7683 7750 127 + . . scaffold38568 GLEAN mRNA 18725 18927 0.983686 - . ID=CGI_10002862; scaffold38568 TRF Tandem_Repeat 18725 18927 298 + . . scaffold38568 GLEAN mRNA 20921 20967 0.983686 - . ID=CGI_10002862; scaffold38568 TRF Tandem_Repeat 20921 20967 62 + . . scaffold38568 GLEAN mRNA 29278 29315 0.358708 + . ID=CGI_10002863; scaffold38568 TRF Tandem_Repeat 29278 29315 76 + . . scaffold38626 GLEAN mRNA 27592 27912 1 - . ID=CGI_10002868; scaffold38626 WUBlastX LINE_CR1 27592 27912 145 - . . scaffold38626 GLEAN mRNA 27062 27424 1 - . ID=CGI_10002868; scaffold38626 WUBlastX LINE_CR1 27062 27424 46 - . . scaffold38626 GLEAN mRNA 27421 27912 1 - . ID=CGI_10002868; scaffold38626 WUBlastX LINE_CR1 27421 27912 143 - . . scaffold38626 GLEAN mRNA 27131 27427 1 - . ID=CGI_10002868; scaffold38626 WUBlastX LINE_CR1 27131 27427 156 - . . scaffold38626 GLEAN mRNA 27902 27976 1 - . ID=CGI_10002868; scaffold38626 WUBlastX LINE_CR1 27902 27976 27 - . . scaffold1010 GLEAN mRNA 8353 8386 0.695899 + . ID=CGI_10002872; scaffold1010 TRF Tandem_Repeat 8353 8386 52 + . . scaffold39476 GLEAN mRNA 50125 50358 1 + . ID=CGI_10002876; scaffold39476 WUBlastX LTR_Gypsy 50125 50358 35 + . . scaffold39476 GLEAN mRNA 50125 50475 1 + . ID=CGI_10002876; scaffold39476 WUBlastX LTR_Gypsy 50125 50475 20 + . . scaffold39476 GLEAN mRNA 49914 50147 1 + . ID=CGI_10002876; scaffold39476 WUBlastX LTR_Gypsy 49914 50147 119 + . . scaffold39476 GLEAN mRNA 49869 50138 1 + . ID=CGI_10002876; scaffold39476 WUBlastX LTR_Gypsy 49869 50138 103 + . . scaffold39476 GLEAN mRNA 49629 50147 1 + . ID=CGI_10002876; scaffold39476 WUBlastX LTR_Gypsy 49629 50147 86 + . . scaffold39476 GLEAN mRNA 49890 50210 1 + . ID=CGI_10002876; scaffold39476 WUBlastX LTR_Gypsy 49890 50210 67 + . . scaffold1797 GLEAN mRNA 10044 10086 1 + . ID=CGI_10002881; scaffold1797 TRF Tandem_Repeat 10044 10086 79 + . . scaffold1797 GLEAN mRNA 10133 10164 1 + . ID=CGI_10002881; scaffold1797 TRF Tandem_Repeat 10133 10164 64 + . . scaffold38672 GLEAN mRNA 15863 15918 0.99899 + . ID=CGI_10002887; scaffold38672 TRF Tandem_Repeat 15863 15918 112 + . . scaffold38672 GLEAN mRNA 7809 9515 0.99899 + . ID=CGI_10002887; scaffold38672 WUBlastX LINE_L1-Tx1 7809 9515 986 - . . scaffold302 GLEAN mRNA 7694 7749 0.733291 + . ID=CGI_10002890; scaffold302 TRF Tandem_Repeat 7694 7749 112 + . . scaffold952 GLEAN mRNA 25021 25602 0.999676 + . ID=CGI_10002898; scaffold952 WUBlastX LINE_L1-Tx1 25021 25602 42 + . . scaffold952 GLEAN mRNA 23292 23495 0.999676 + . ID=CGI_10002898; scaffold952 WUBlastX LINE_L1 23292 23495 58 + . . scaffold952 GLEAN mRNA 23165 23206 0.999676 + . ID=CGI_10002898; scaffold952 WUBlastX LINE_L1-Tx1 23165 23206 22 + . . scaffold952 GLEAN mRNA 23497 23778 0.999676 + . ID=CGI_10002898; scaffold952 WUBlastX LINE_L1-Tx1 23497 23778 61 + . . scaffold952 GLEAN mRNA 23431 23994 0.999676 + . ID=CGI_10002898; scaffold952 WUBlastX LINE_L1-Tx1 23431 23994 51 + . . scaffold952 GLEAN mRNA 25090 25434 0.999676 + . ID=CGI_10002898; scaffold952 WUBlastX LINE_L1-Tx1 25090 25434 55 + . . scaffold952 GLEAN mRNA 17102 17869 0.999676 + . ID=CGI_10002898; scaffold952 WUBlastX DNA_TcMar-Tc1 17102 17869 273 - . . scaffold952 GLEAN mRNA 23196 23495 0.999676 + . ID=CGI_10002898; scaffold952 WUBlastX LINE_L1 23196 23495 31 + . . scaffold952 GLEAN mRNA 25021 25437 0.999676 + . ID=CGI_10002898; scaffold952 WUBlastX LINE_L1-Tx1 25021 25437 52 + . . scaffold38674 GLEAN mRNA 11725 12301 1 - . ID=CGI_10002899; scaffold38674 TRF Tandem_Repeat 11725 12301 637 + . . scaffold38674 GLEAN mRNA 11725 12301 1 - . ID=CGI_10002899; scaffold38674 TRF Tandem_Repeat 11725 12301 707 + . . scaffold38674 GLEAN mRNA 12830 13029 1 - . ID=CGI_10002899; scaffold38674 TRF Tandem_Repeat 12830 13029 278 + . . scaffold38674 GLEAN mRNA 21143 21191 0.613255 + . ID=CGI_10002900; scaffold38674 TRF Tandem_Repeat 21143 21191 57 + . . scaffold38674 GLEAN mRNA 21147 21196 0.613255 + . ID=CGI_10002900; scaffold38674 TRF Tandem_Repeat 21147 21196 54 + . . scaffold38674 GLEAN mRNA 34897 34926 0.701749 + . ID=CGI_10002901; scaffold38674 TRF Tandem_Repeat 34897 34926 60 + . . scaffold38654 GLEAN mRNA 13848 13928 0.994136 + . ID=CGI_10002902; scaffold38654 TRF Tandem_Repeat 13848 13928 99 + . . scaffold38654 GLEAN mRNA 13848 13918 0.994136 + . ID=CGI_10002902; scaffold38654 TRF Tandem_Repeat 13848 13918 81 + . . scaffold38654 GLEAN mRNA 22490 22549 0.994136 + . ID=CGI_10002902; scaffold38654 TRF Tandem_Repeat 22490 22549 120 + . . scaffold38678 GLEAN mRNA 278 1021 1 - . ID=CGI_10002904; scaffold38678 WUBlastX DNA_Kolobok-IS4 278 1021 413 - . . scaffold38678 GLEAN mRNA 248 1096 1 - . ID=CGI_10002904; scaffold38678 WUBlastX DNA_IS4EU 248 1261 364 - . . scaffold1831 GLEAN mRNA 4830 4991 0.99964 + . ID=CGI_10002912; scaffold1831 TRF Tandem_Repeat 4830 4991 306 + . . scaffold1831 GLEAN mRNA 4991 5033 0.99964 + . ID=CGI_10002912; scaffold1831 TRF Tandem_Repeat 4991 5033 50 + . . scaffold1831 GLEAN mRNA 13375 14225 0.99964 + . ID=CGI_10002912; scaffold1831 TRF Tandem_Repeat 13375 14225 817 + . . scaffold1831 GLEAN mRNA 13383 14155 0.99964 + . ID=CGI_10002912; scaffold1831 TRF Tandem_Repeat 13383 14155 966 + . . scaffold1831 GLEAN mRNA 2702 2998 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LTR_Gypsy 2702 2998 249 - . . scaffold1831 GLEAN mRNA 1132 1374 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 1132 1374 135 - . . scaffold1831 GLEAN mRNA 1383 1502 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 1383 1502 75 - . . scaffold1831 GLEAN mRNA 1806 1886 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 1806 1886 42 - . . scaffold1831 GLEAN mRNA 2588 3004 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LTR_Gypsy 2588 3004 137 - . . scaffold1831 GLEAN mRNA 1806 1916 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 1806 1916 32 - . . scaffold1831 GLEAN mRNA 1455 1676 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 1455 1676 25 - . . scaffold1831 GLEAN mRNA 1153 1416 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 1153 1416 86 - . . scaffold1831 GLEAN mRNA 1413 1616 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 1413 1616 58 - . . scaffold1831 GLEAN mRNA 18260 18293 0.99964 + . ID=CGI_10002912; scaffold1831 TRF Tandem_Repeat 18260 18293 59 + . . scaffold1831 GLEAN mRNA 22660 22700 0.99964 + . ID=CGI_10002912; scaffold1831 TRF Tandem_Repeat 22660 22700 82 + . . scaffold1831 GLEAN mRNA 29392 29426 0.99964 + . ID=CGI_10002912; scaffold1831 TRF Tandem_Repeat 29392 29426 70 + . . scaffold1831 GLEAN mRNA 26037 26147 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1 26037 26147 20 - . . scaffold1831 GLEAN mRNA 25619 25807 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L2 25619 25807 38 - . . scaffold1831 GLEAN mRNA 26579 26812 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1-Tx1 26579 26812 40 - . . scaffold1831 GLEAN mRNA 25595 25768 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 25595 25768 65 - . . scaffold1831 GLEAN mRNA 24109 24990 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 24109 24990 150 - . . scaffold1831 GLEAN mRNA 26456 26773 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 26456 26773 82 - . . scaffold1831 GLEAN mRNA 30584 31324 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 30584 31324 253 - . . scaffold1831 GLEAN mRNA 31353 31667 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 31353 31667 161 - . . scaffold1831 GLEAN mRNA 26435 26674 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 26435 26674 136 - . . scaffold1831 GLEAN mRNA 30387 30704 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 30387 30704 97 - . . scaffold1831 GLEAN mRNA 31785 31892 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 31785 31892 91 - . . scaffold1831 GLEAN mRNA 26579 26896 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1 26579 26896 25 - . . scaffold1831 GLEAN mRNA 25595 25741 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 25595 25741 70 - . . scaffold1831 GLEAN mRNA 23335 24765 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 23335 24765 944 - . . scaffold1831 GLEAN mRNA 26318 26701 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_CR1-L2 26318 26701 28 - . . scaffold1831 GLEAN mRNA 25619 25846 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L2 25619 25846 23 - . . scaffold1831 GLEAN mRNA 25511 25729 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-X 25511 25729 23 - . . scaffold1831 GLEAN mRNA 26447 26725 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_I 26447 26725 103 - . . scaffold1831 GLEAN mRNA 25147 25302 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX DNA_Harbinger 25147 25302 68 + . . scaffold1831 GLEAN mRNA 33444 33857 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_I 33444 33857 53 + . . scaffold1831 GLEAN mRNA 34302 34775 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1-Tx1 34302 34775 199 + . . scaffold1831 GLEAN mRNA 32940 33647 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1-Tx1 32940 33647 209 + . . scaffold1831 GLEAN mRNA 34026 34754 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 34026 34754 88 + . . scaffold1831 GLEAN mRNA 33543 34238 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_I-Nimb 33543 34238 52 + . . scaffold1831 GLEAN mRNA 34880 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1-Tx1 34880 35122 37 + . . scaffold1831 GLEAN mRNA 34296 34895 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_L1-Tx1 34296 34895 160 + . . scaffold1831 GLEAN mRNA 30584 31324 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_RTE-X 30584 31324 253 - . . scaffold1831 GLEAN mRNA 31353 31667 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_RTE-X 31353 31667 161 - . . scaffold1831 GLEAN mRNA 30387 30704 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_RTE-X 30387 30704 97 - . . scaffold1831 GLEAN mRNA 31785 31892 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_RTE-X 31785 31892 91 - . . scaffold1831 GLEAN mRNA 33444 33857 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_I 33444 33857 53 + . . scaffold1831 GLEAN mRNA 34302 34775 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_L1-Tx1 34302 34775 199 + . . scaffold1831 GLEAN mRNA 34985 37786 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_L1-Tx1 34985 37786 952 + . . scaffold1831 GLEAN mRNA 32940 33647 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_L1-Tx1 32940 33647 209 + . . scaffold1831 GLEAN mRNA 34026 34754 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_RTE-BovB 34026 34754 88 + . . scaffold1831 GLEAN mRNA 33543 34238 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_I-Nimb 33543 34238 52 + . . scaffold1831 GLEAN mRNA 34880 35122 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_L1-Tx1 34880 35122 37 + . . scaffold1831 GLEAN mRNA 37682 37810 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_I 37682 37810 29 + . . scaffold1831 GLEAN mRNA 34296 34895 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_L1-Tx1 34296 34895 160 + . . scaffold643 GLEAN mRNA 17691 17738 0.999072 - . ID=CGI_10002914; scaffold643 TRF Tandem_Repeat 17691 17738 96 + . . scaffold643 GLEAN mRNA 18078 18112 0.999072 - . ID=CGI_10002914; scaffold643 TRF Tandem_Repeat 18078 18112 61 + . . scaffold643 GLEAN mRNA 31798 31854 0.998617 + . ID=CGI_10002915; scaffold643 TRF Tandem_Repeat 31798 31854 114 + . . scaffold1577 GLEAN mRNA 11997 13003 0.998598 - . ID=CGI_10002923; scaffold1577 TRF Tandem_Repeat 11997 13003 1518 + . . scaffold1577 GLEAN mRNA 24029 24101 0.998598 - . ID=CGI_10002923; scaffold1577 TRF Tandem_Repeat 24029 24101 146 + . . scaffold1577 GLEAN mRNA 53258 53309 0.575468 + . ID=CGI_10002925; scaffold1577 TRF Tandem_Repeat 53258 53309 104 + . . scaffold912 GLEAN mRNA 35749 35788 0.492255 - . ID=CGI_10002926; scaffold912 TRF Tandem_Repeat 35749 35788 80 + . . scaffold912 GLEAN mRNA 44521 44547 0.492255 - . ID=CGI_10002926; scaffold912 TRF Tandem_Repeat 44521 44547 54 + . . scaffold912 GLEAN mRNA 36218 36430 0.492255 - . ID=CGI_10002926; scaffold912 WUBlastX LINE_L1-Tx1 36218 36430 92 - . . scaffold912 GLEAN mRNA 36263 36445 0.492255 - . ID=CGI_10002926; scaffold912 WUBlastX LINE_L1-Tx1 36263 36445 93 - . . scaffold912 GLEAN mRNA 36314 36430 0.492255 - . ID=CGI_10002926; scaffold912 WUBlastX LINE_L1 36314 36430 101 - . . scaffold38650 GLEAN mRNA 5924 6055 0.276198 + . ID=CGI_10002927; scaffold38650 TRF Tandem_Repeat 5924 6055 114 + . . scaffold38650 GLEAN mRNA 7585 7613 0.276198 + . ID=CGI_10002927; scaffold38650 TRF Tandem_Repeat 7585 7613 58 + . . scaffold38704 GLEAN mRNA 39791 39970 0.971099 + . ID=CGI_10002940; scaffold38704 TRF Tandem_Repeat 39791 39970 143 + . . scaffold38704 GLEAN mRNA 39815 40112 0.971099 + . ID=CGI_10002940; scaffold38704 TRF Tandem_Repeat 39815 40112 297 + . . scaffold38714 GLEAN mRNA 34703 34863 1 - . ID=CGI_10002941; scaffold38714 TRF Tandem_Repeat 34703 34863 65 + . . scaffold38714 GLEAN mRNA 34803 34890 1 - . ID=CGI_10002941; scaffold38714 TRF Tandem_Repeat 34803 34890 77 + . . scaffold38714 GLEAN mRNA 36617 37377 1 - . ID=CGI_10002941; scaffold38714 TRF Tandem_Repeat 36617 37377 811 + . . scaffold38736 GLEAN mRNA 50224 50367 1 + . ID=CGI_10002944; scaffold38736 WUBlastX DNA_Harbinger 50224 50367 65 + . . scaffold38736 GLEAN mRNA 50560 50829 1 + . ID=CGI_10002944; scaffold38736 WUBlastX DNA_Harbinger 50560 50829 81 + . . scaffold38736 GLEAN mRNA 50560 50781 1 + . ID=CGI_10002944; scaffold38736 WUBlastX DNA_Harbinger 50560 50781 103 + . . scaffold38752 GLEAN mRNA 3622 4712 0.650722 - . ID=CGI_10002945; scaffold38752 TRF Tandem_Repeat 3622 4712 1666 + . . scaffold38752 GLEAN mRNA 4918 4955 0.650722 - . ID=CGI_10002945; scaffold38752 TRF Tandem_Repeat 4918 4955 58 + . . scaffold38752 GLEAN mRNA 9001 9288 0.650722 - . ID=CGI_10002945; scaffold38752 WUBlastX LINE_RTE-X 9001 9288 69 - . . scaffold38752 GLEAN mRNA 8992 9168 0.650722 - . ID=CGI_10002945; scaffold38752 WUBlastX LINE_RTE-X 8992 9168 86 - . . scaffold38752 GLEAN mRNA 9001 9288 0.993907 + . ID=CGI_10002946; scaffold38752 WUBlastX LINE_RTE-X 9001 9288 69 - . . scaffold38752 GLEAN mRNA 8992 9168 0.993907 + . ID=CGI_10002946; scaffold38752 WUBlastX LINE_RTE-X 8992 9168 86 - . . scaffold38752 GLEAN mRNA 26790 26837 0.999942 + . ID=CGI_10002947; scaffold38752 TRF Tandem_Repeat 26790 26837 96 + . . scaffold38752 GLEAN mRNA 41763 41813 0.998173 - . ID=CGI_10002949; scaffold38752 TRF Tandem_Repeat 41763 41813 102 + . . scaffold38752 GLEAN mRNA 48426 48467 0.998173 - . ID=CGI_10002949; scaffold38752 TRF Tandem_Repeat 48426 48467 75 + . . scaffold38750 GLEAN mRNA 5763 6011 0.927797 + . ID=CGI_10002953; scaffold38750 WUBlastX LINE_RTE-X 5763 6011 87 - . . scaffold38750 GLEAN mRNA 4462 4677 0.927797 + . ID=CGI_10002953; scaffold38750 WUBlastX LINE_RTE-X 4462 4677 82 + . . scaffold38750 GLEAN mRNA 3734 3955 0.927797 + . ID=CGI_10002953; scaffold38750 WUBlastX LINE_RTE-X 3734 3955 53 + . . scaffold38750 GLEAN mRNA 4459 4758 0.927797 + . ID=CGI_10002953; scaffold38750 WUBlastX LINE_RTE-X 4459 4758 62 + . . scaffold38750 GLEAN mRNA 3957 4256 0.927797 + . ID=CGI_10002953; scaffold38750 WUBlastX LINE_RTE-X 3957 4256 73 + . . scaffold38750 GLEAN mRNA 3948 4133 0.927797 + . ID=CGI_10002953; scaffold38750 WUBlastX LINE_RTE-X 3948 4133 80 + . . scaffold38750 GLEAN mRNA 16879 17373 0.999995 + . ID=CGI_10002957; scaffold38750 WUBlastX LINE_RTE-X 16879 17373 21 + . . scaffold38750 GLEAN mRNA 17041 17307 0.999995 + . ID=CGI_10002957; scaffold38750 WUBlastX LINE_RTE-X 17041 17307 106 + . . scaffold38780 GLEAN mRNA 15871 15896 0.959487 - . ID=CGI_10002959; scaffold38780 TRF Tandem_Repeat 15871 15896 52 + . . scaffold38780 GLEAN mRNA 2838 3248 0.959487 - . ID=CGI_10002959; scaffold38780 WUBlastX DNA_Merlin 2838 3248 101 + . . scaffold38780 GLEAN mRNA 6745 7221 0.959487 - . ID=CGI_10002959; scaffold38780 WUBlastX DNA_PiggyBac 6745 7221 63 - . . scaffold38780 GLEAN mRNA 13364 13633 0.959487 - . ID=CGI_10002959; scaffold38780 WUBlastX LTR_Gypsy 13364 13633 27 + . . scaffold38780 GLEAN mRNA 6648 6794 0.959487 - . ID=CGI_10002959; scaffold38780 WUBlastX DNA_PiggyBac 6648 6794 70 - . . scaffold38780 GLEAN mRNA 6612 6794 0.959487 - . ID=CGI_10002959; scaffold38780 WUBlastX DNA_PiggyBac 6612 6794 63 - . . scaffold38780 GLEAN mRNA 13376 13555 0.959487 - . ID=CGI_10002959; scaffold38780 WUBlastX LTR_Gypsy 13376 13555 34 + . . scaffold38780 GLEAN mRNA 12162 12605 0.959487 - . ID=CGI_10002959; scaffold38780 WUBlastX LTR_Gypsy 12162 12605 81 + . . scaffold38780 GLEAN mRNA 21925 22074 0.999988 + . ID=CGI_10002960; scaffold38780 WUBlastX DNA_Kolobok 21925 22074 79 + . . scaffold1117 GLEAN mRNA 11980 12648 0.793024 + . ID=CGI_10002970; scaffold1117 WUBlastX LINE_L1-Tx1 11980 12648 76 - . . scaffold1117 GLEAN mRNA 51620 51666 0.999027 + . ID=CGI_10002973; scaffold1117 TRF Tandem_Repeat 51620 51666 94 + . . scaffold38774 GLEAN mRNA 31045 31099 0.908953 - . ID=CGI_10002974; scaffold38774 TRF Tandem_Repeat 31045 31099 55 + . . scaffold38774 GLEAN mRNA 31107 31908 0.908953 - . ID=CGI_10002974; scaffold38774 TRF Tandem_Repeat 31107 31908 1143 + . . scaffold38804 GLEAN mRNA 26216 26307 0.371949 - . ID=CGI_10002976; scaffold38804 TRF Tandem_Repeat 26216 26307 91 + . . scaffold38804 GLEAN mRNA 27274 27299 0.371949 - . ID=CGI_10002976; scaffold38804 TRF Tandem_Repeat 27274 27299 52 + . . scaffold38804 GLEAN mRNA 32015 32281 0.371949 - . ID=CGI_10002976; scaffold38804 WUBlastX LINE_CR1-L2 32015 32281 51 - . . scaffold38804 GLEAN mRNA 32441 32500 0.371949 - . ID=CGI_10002976; scaffold38804 WUBlastX LINE_CR1 32441 32500 25 - . . scaffold38784 GLEAN mRNA 40688 40820 0.503077 + . ID=CGI_10002994; scaffold38784 TRF Tandem_Repeat 40688 40820 162 + . . scaffold38784 GLEAN mRNA 40964 40992 0.503077 + . ID=CGI_10002994; scaffold38784 TRF Tandem_Repeat 40964 40992 58 + . . scaffold38784 GLEAN mRNA 41186 41273 0.503077 + . ID=CGI_10002994; scaffold38784 TRF Tandem_Repeat 41186 41273 126 + . . scaffold38784 GLEAN mRNA 41313 41626 0.503077 + . ID=CGI_10002994; scaffold38784 TRF Tandem_Repeat 41313 41626 373 + . . scaffold38784 GLEAN mRNA 42999 43343 0.503077 + . ID=CGI_10002994; scaffold38784 WUBlastX DNA_Academ 42999 43343 167 - . . scaffold1161 GLEAN mRNA 9384 9425 0.152065 + . ID=CGI_10002995; scaffold1161 TRF Tandem_Repeat 9384 9425 75 + . . scaffold1161 GLEAN mRNA 10189 10237 0.152065 + . ID=CGI_10002995; scaffold1161 TRF Tandem_Repeat 10189 10237 98 + . . scaffold38828 GLEAN mRNA 18955 19174 0.444192 - . ID=CGI_10002999; scaffold38828 TRF Tandem_Repeat 18955 19174 361 + . . scaffold38828 GLEAN mRNA 19666 19773 0.444192 - . ID=CGI_10002999; scaffold38828 TRF Tandem_Repeat 19666 19773 162 + . . scaffold38828 GLEAN mRNA 33023 33556 0.998504 + . ID=CGI_10003000; scaffold38828 WUBlastX LTR_ERV1 33023 33556 62 + . . scaffold38828 GLEAN mRNA 60947 60997 0.999985 - . ID=CGI_10003001; scaffold38828 TRF Tandem_Repeat 60947 60997 52 + . . scaffold38828 GLEAN mRNA 60963 60992 0.999985 - . ID=CGI_10003001; scaffold38828 TRF Tandem_Repeat 60963 60992 51 + . . scaffold38884 GLEAN mRNA 22118 22173 0.962986 + . ID=CGI_10003003; scaffold38884 TRF Tandem_Repeat 22118 22173 85 + . . scaffold38884 GLEAN mRNA 45866 46405 1 - . ID=CGI_10003004; scaffold38884 WUBlastX LTR_DIRS 45866 46405 241 + . . scaffold38884 GLEAN mRNA 46854 47921 1 - . ID=CGI_10003004; scaffold38884 WUBlastX LTR_DIRS 46854 47921 688 + . . scaffold38884 GLEAN mRNA 47899 48540 1 - . ID=CGI_10003004; scaffold38884 WUBlastX LTR_DIRS 47899 48540 359 + . . scaffold38884 GLEAN mRNA 45866 46876 1 - . ID=CGI_10003004; scaffold38884 WUBlastX LTR_DIRS 45866 46876 220 + . . scaffold38884 GLEAN mRNA 49300 49533 1 - . ID=CGI_10003004; scaffold38884 WUBlastX DNA?_Crypton? 49300 49533 57 + . . scaffold38884 GLEAN mRNA 49339 49539 1 - . ID=CGI_10003004; scaffold38884 WUBlastX LTR_DIRS 49339 49539 149 + . . scaffold38884 GLEAN mRNA 48548 49297 1 - . ID=CGI_10003004; scaffold38884 WUBlastX LTR_DIRS 48548 49297 538 + . . scaffold38824 GLEAN mRNA 40945 40988 1 + . ID=CGI_10003008; scaffold38824 TRF Tandem_Repeat 40945 40988 52 + . . scaffold38824 GLEAN mRNA 42555 42590 1 + . ID=CGI_10003008; scaffold38824 TRF Tandem_Repeat 42555 42590 72 + . . scaffold38854 GLEAN mRNA 11216 11259 0.993765 - . ID=CGI_10003010; scaffold38854 TRF Tandem_Repeat 11216 11259 88 + . . scaffold38854 GLEAN mRNA 17582 17728 0.835209 + . ID=CGI_10003011; scaffold38854 WUBlastX LINE_L2 17582 17728 20 + . . scaffold38854 GLEAN mRNA 19353 19715 0.835209 + . ID=CGI_10003011; scaffold38854 WUBlastX DNA_Harbinger 19353 19715 102 + . . scaffold38854 GLEAN mRNA 18573 18755 0.835209 + . ID=CGI_10003011; scaffold38854 WUBlastX LINE_L1-Tx1 18573 18755 61 + . . scaffold38854 GLEAN mRNA 18758 18883 0.835209 + . ID=CGI_10003011; scaffold38854 WUBlastX LINE_L1-Tx1 18758 18883 29 + . . scaffold38854 GLEAN mRNA 18115 18603 0.835209 + . ID=CGI_10003011; scaffold38854 WUBlastX LINE_L1-Tx1 18115 18603 237 + . . scaffold38854 GLEAN mRNA 18767 18844 0.835209 + . ID=CGI_10003011; scaffold38854 WUBlastX LINE_L1-Tx1 18767 18844 33 + . . scaffold38854 GLEAN mRNA 31550 31927 0.651134 - . ID=CGI_10003012; scaffold38854 WUBlastX LTR_Gypsy 31550 31927 132 + . . scaffold38854 GLEAN mRNA 31547 31867 0.651134 - . ID=CGI_10003012; scaffold38854 WUBlastX LTR_Gypsy 31547 31867 151 + . . scaffold38822 GLEAN mRNA 1502 1583 0.999998 - . ID=CGI_10003013; scaffold38822 TRF Tandem_Repeat 1502 1583 137 + . . scaffold38822 GLEAN mRNA 3502 3539 0.999998 - . ID=CGI_10003013; scaffold38822 TRF Tandem_Repeat 3502 3539 76 + . . scaffold38822 GLEAN mRNA 7291 7370 0.999998 - . ID=CGI_10003013; scaffold38822 TRF Tandem_Repeat 7291 7370 128 + . . scaffold38822 GLEAN mRNA 8374 8712 0.999998 - . ID=CGI_10003013; scaffold38822 WUBlastX LTR_Ngaro 8374 8712 85 + . . scaffold38822 GLEAN mRNA 8362 8772 0.999998 - . ID=CGI_10003013; scaffold38822 WUBlastX LTR_Ngaro 8362 8772 76 + . . scaffold181 GLEAN mRNA 26565 26720 0.999547 + . ID=CGI_10003023; scaffold181 WUBlastX LINE_CR1-L2 26565 26720 54 + . . scaffold1426 GLEAN mRNA 1772 1819 0.990953 - . ID=CGI_10003025; scaffold1426 TRF Tandem_Repeat 1772 1819 96 + . . scaffold1426 GLEAN mRNA 6647 6973 0.990953 - . ID=CGI_10003025; scaffold1426 WUBlastX DNA_hAT-Charlie 6647 6973 86 + . . scaffold1426 GLEAN mRNA 5871 6380 0.990953 - . ID=CGI_10003025; scaffold1426 WUBlastX DNA_hAT-Tip100 5871 6380 61 + . . scaffold1426 GLEAN mRNA 6015 6419 0.990953 - . ID=CGI_10003025; scaffold1426 WUBlastX DNA_hAT-Tip100 6015 6419 96 + . . scaffold1426 GLEAN mRNA 6611 6880 0.990953 - . ID=CGI_10003025; scaffold1426 WUBlastX DNA_hAT-Tip100 6611 6880 131 + . . scaffold1426 GLEAN mRNA 6880 7038 0.990953 - . ID=CGI_10003025; scaffold1426 WUBlastX DNA_hAT-Tip100 6880 7038 63 + . . scaffold1426 GLEAN mRNA 7133 7483 0.990953 - . ID=CGI_10003025; scaffold1426 WUBlastX DNA_hAT-Tip100 7133 7483 44 + . . scaffold1426 GLEAN mRNA 44453 45230 0.825228 - . ID=CGI_10003026; scaffold1426 TRF Tandem_Repeat 44453 45230 1015 + . . scaffold38876 GLEAN mRNA 31253 31381 0.945662 + . ID=CGI_10003027; scaffold38876 WUBlastX LTR_Gypsy 31253 31381 25 + . . scaffold38912 GLEAN mRNA 6085 6420 1 + . ID=CGI_10003031; scaffold38912 WUBlastX LINE_L2 6085 6420 85 - . . scaffold38900 GLEAN mRNA 18349 18528 0.999939 - . ID=CGI_10003039; scaffold38900 WUBlastX DNA_Harbinger 18349 18528 55 - . . scaffold38900 GLEAN mRNA 21619 21771 0.999939 - . ID=CGI_10003039; scaffold38900 WUBlastX DNA_Harbinger 21619 21777 66 - . . scaffold38900 GLEAN mRNA 48942 49109 0.811602 - . ID=CGI_10003041; scaffold38900 WUBlastX DNA_Harbinger 48942 49109 36 - . . scaffold38900 GLEAN mRNA 49284 49338 0.811602 - . ID=CGI_10003041; scaffold38900 TRF Tandem_Repeat 49284 49338 110 + . . scaffold38900 GLEAN mRNA 60430 60467 1 - . ID=CGI_10003043; scaffold38900 TRF Tandem_Repeat 60430 60467 76 + . . scaffold38904 GLEAN mRNA 22374 23183 0.495502 - . ID=CGI_10003048; scaffold38904 WUBlastX LTR_Ngaro 22374 23183 148 + . . scaffold38904 GLEAN mRNA 22264 22503 0.495502 - . ID=CGI_10003048; scaffold38904 WUBlastX LTR_Ngaro 22264 22503 32 + . . scaffold38904 GLEAN mRNA 22506 23189 0.495502 - . ID=CGI_10003048; scaffold38904 WUBlastX LTR_Ngaro 22506 23189 216 + . . scaffold272 GLEAN mRNA 819 1061 0.555898 + . ID=CGI_10003053; scaffold272 WUBlastX LINE_L2 819 1061 24 + . . scaffold272 GLEAN mRNA 37468 37510 0.999882 + . ID=CGI_10003057; scaffold272 TRF Tandem_Repeat 37468 37510 86 + . . scaffold272 GLEAN mRNA 38540 38570 0.999882 + . ID=CGI_10003057; scaffold272 TRF Tandem_Repeat 38540 38570 62 + . . scaffold272 GLEAN mRNA 38818 38905 0.999882 + . ID=CGI_10003057; scaffold272 TRF Tandem_Repeat 38818 38905 158 + . . scaffold272 GLEAN mRNA 48426 48482 0.999882 + . ID=CGI_10003057; scaffold272 TRF Tandem_Repeat 48426 48482 114 + . . scaffold272 GLEAN mRNA 48867 48917 0.999882 + . ID=CGI_10003057; scaffold272 TRF Tandem_Repeat 48867 48917 57 + . . scaffold272 GLEAN mRNA 46182 46340 0.999882 + . ID=CGI_10003057; scaffold272 WUBlastX LINE_CR1-L2 46182 46340 37 + . . scaffold272 GLEAN mRNA 45847 46089 0.999882 + . ID=CGI_10003057; scaffold272 WUBlastX LINE_L2 45847 46089 72 + . . scaffold272 GLEAN mRNA 45326 45781 0.999882 + . ID=CGI_10003057; scaffold272 WUBlastX LINE_L2 45326 45781 157 + . . scaffold272 GLEAN mRNA 45158 45787 0.999882 + . ID=CGI_10003057; scaffold272 WUBlastX LINE_L2 45158 45787 91 + . . scaffold272 GLEAN mRNA 45446 46153 0.999882 + . ID=CGI_10003057; scaffold272 WUBlastX LINE_L2 45446 46153 58 + . . scaffold272 GLEAN mRNA 61106 61174 0.999882 + . ID=CGI_10003057; scaffold272 TRF Tandem_Repeat 61106 61174 138 + . . scaffold38920 GLEAN mRNA 15118 15163 0.283475 + . ID=CGI_10003065; scaffold38920 TRF Tandem_Repeat 15118 15163 65 + . . scaffold38920 GLEAN mRNA 15598 15781 0.283475 + . ID=CGI_10003065; scaffold38920 TRF Tandem_Repeat 15598 15781 217 + . . scaffold38920 GLEAN mRNA 28889 28914 0.283475 + . ID=CGI_10003065; scaffold38920 TRF Tandem_Repeat 28889 28914 52 + . . scaffold38920 GLEAN mRNA 54500 54529 0.998999 + . ID=CGI_10003066; scaffold38920 TRF Tandem_Repeat 54500 54529 60 + . . scaffold38944 GLEAN mRNA 15994 16320 0.608915 - . ID=CGI_10003069; scaffold38944 TRF Tandem_Repeat 15994 16320 546 + . . scaffold38944 GLEAN mRNA 22826 23467 0.769564 + . ID=CGI_10003070; scaffold38944 WUBlastX LTR_Gypsy 22826 23467 57 + . . scaffold38944 GLEAN mRNA 22468 22614 0.769564 + . ID=CGI_10003070; scaffold38944 WUBlastX LTR_Gypsy 21742 22614 45 + . . scaffold38944 GLEAN mRNA 34458 34513 0.889923 + . ID=CGI_10003072; scaffold38944 TRF Tandem_Repeat 34458 34513 76 + . . scaffold38944 GLEAN mRNA 34544 35670 0.889923 + . ID=CGI_10003072; scaffold38944 TRF Tandem_Repeat 34544 35670 1595 + . . scaffold38944 GLEAN mRNA 42817 42860 0.544852 + . ID=CGI_10003073; scaffold38944 TRF Tandem_Repeat 42817 42860 88 + . . scaffold1136 GLEAN mRNA 46801 46854 0.999895 + . ID=CGI_10003080; scaffold1136 WUBlastX LINE_RTE-X 46801 46854 20 + . . scaffold1136 GLEAN mRNA 46060 46464 0.999895 + . ID=CGI_10003080; scaffold1136 WUBlastX LINE_RTE-X 46060 46464 158 + . . scaffold1136 GLEAN mRNA 46024 46506 0.999895 + . ID=CGI_10003080; scaffold1136 WUBlastX LINE_RTE-X 46024 46506 103 + . . scaffold1136 GLEAN mRNA 46774 46827 0.999895 + . ID=CGI_10003080; scaffold1136 WUBlastX LINE_RTE-X 46774 46827 21 + . . scaffold1136 GLEAN mRNA 45820 46434 0.999895 + . ID=CGI_10003080; scaffold1136 WUBlastX LINE_I 45820 46434 20 + . . scaffold38934 GLEAN mRNA 20984 21286 0.999796 + . ID=CGI_10003096; scaffold38934 WUBlastX LTR_Ngaro 20984 21286 165 - . . scaffold38934 GLEAN mRNA 20660 21313 0.999796 + . ID=CGI_10003096; scaffold38934 WUBlastX LTR_Ngaro 20660 21313 93 - . . scaffold38934 GLEAN mRNA 20073 20228 0.999796 + . ID=CGI_10003096; scaffold38934 WUBlastX LTR_Ngaro 20073 20228 43 - . . scaffold38934 GLEAN mRNA 20849 21286 0.999796 + . ID=CGI_10003096; scaffold38934 WUBlastX LTR_Ngaro 20849 21286 108 - . . scaffold38934 GLEAN mRNA 20043 20228 0.999796 + . ID=CGI_10003096; scaffold38934 WUBlastX LTR_Ngaro 20043 20228 39 - . . scaffold38934 GLEAN mRNA 29783 29816 0.375661 + . ID=CGI_10003097; scaffold38934 TRF Tandem_Repeat 29783 29816 68 + . . scaffold38934 GLEAN mRNA 45976 46143 0.375661 + . ID=CGI_10003097; scaffold38934 WUBlastX DNA_Kolobok 45976 46143 86 + . . scaffold38934 GLEAN mRNA 44941 45171 0.375661 + . ID=CGI_10003097; scaffold38934 WUBlastX DNA_Kolobok 44941 45171 38 + . . scaffold38934 GLEAN mRNA 46366 47082 0.375661 + . ID=CGI_10003097; scaffold38934 WUBlastX DNA_Kolobok 46366 47082 411 - . . scaffold1233 GLEAN mRNA 1172 1200 0.387616 - . ID=CGI_10003098; scaffold1233 TRF Tandem_Repeat 1172 1200 58 + . . scaffold1233 GLEAN mRNA 6423 6670 0.387616 - . ID=CGI_10003098; scaffold1233 TRF Tandem_Repeat 6423 6670 424 + . . scaffold1233 GLEAN mRNA 15831 15971 0.387616 - . ID=CGI_10003098; scaffold1233 TRF Tandem_Repeat 15831 15971 129 + . . scaffold1233 GLEAN mRNA 13343 13570 0.387616 - . ID=CGI_10003098; scaffold1233 WUBlastX DNA_IS4EU 13343 13570 120 - . . scaffold1233 GLEAN mRNA 11448 11573 0.387616 - . ID=CGI_10003098; scaffold1233 WUBlastX DNA_IS4EU 11448 11573 35 + . . scaffold1233 GLEAN mRNA 12271 12381 0.387616 - . ID=CGI_10003098; scaffold1233 WUBlastX DNA_IS4EU 12271 12381 31 + . . scaffold1233 GLEAN mRNA 12573 12803 0.387616 - . ID=CGI_10003098; scaffold1233 WUBlastX DNA_IS4EU 12573 12803 90 + . . scaffold1233 GLEAN mRNA 7663 7875 0.387616 - . ID=CGI_10003098; scaffold1233 WUBlastX LTR_Ngaro 7663 7875 119 - . . scaffold1233 GLEAN mRNA 7666 7947 0.387616 - . ID=CGI_10003098; scaffold1233 WUBlastX LTR_Ngaro 7666 7947 66 - . . scaffold1233 GLEAN mRNA 13152 13433 0.387616 - . ID=CGI_10003098; scaffold1233 WUBlastX DNA_IS4EU 13152 13433 170 - . . scaffold38984 GLEAN mRNA 4270 4326 0.937174 - . ID=CGI_10003104; scaffold38984 TRF Tandem_Repeat 4270 4326 105 + . . scaffold38984 GLEAN mRNA 10953 10995 0.937171 - . ID=CGI_10003105; scaffold38984 TRF Tandem_Repeat 10953 10995 59 + . . scaffold38984 GLEAN mRNA 15666 16040 0.937171 - . ID=CGI_10003105; scaffold38984 WUBlastX LINE_RTE-BovB 15666 16040 95 + . . scaffold38984 GLEAN mRNA 23063 23092 0.930041 - . ID=CGI_10003107; scaffold38984 TRF Tandem_Repeat 23063 23092 60 + . . scaffold38984 GLEAN mRNA 34884 35132 0.930041 - . ID=CGI_10003107; scaffold38984 TRF Tandem_Repeat 34884 35132 374 + . . scaffold38976 GLEAN mRNA 7764 8096 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX LTR_Gypsy 7764 8096 39 - . . scaffold38976 GLEAN mRNA 10731 10946 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX DNA_TcMar-Marin 10731 10946 84 - . . scaffold38976 GLEAN mRNA 11098 11280 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX DNA_TcMar-Marin 11098 11280 120 - . . scaffold38976 GLEAN mRNA 11282 11776 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX DNA_TcMar-Marin 11282 11776 167 - . . scaffold38976 GLEAN mRNA 7875 9392 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX LTR_Gypsy 7875 9392 1423 - . . scaffold38976 GLEAN mRNA 9349 9915 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX LTR_Gypsy 9349 9915 257 - . . scaffold38976 GLEAN mRNA 9927 10343 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX LTR_Gypsy 9927 10343 348 - . . scaffold38966 GLEAN mRNA 29931 30064 0.664373 + . ID=CGI_10003112; scaffold38966 TRF Tandem_Repeat 29931 30064 110 + . . scaffold38966 GLEAN mRNA 49607 49648 0.505852 + . ID=CGI_10003113; scaffold38966 TRF Tandem_Repeat 49607 49648 57 + . . scaffold38966 GLEAN mRNA 52595 53455 0.505852 + . ID=CGI_10003113; scaffold38966 WUBlastX DNA_TcMar-Tc1 52595 53455 205 + . . scaffold38966 GLEAN mRNA 52435 52818 0.505852 + . ID=CGI_10003113; scaffold38966 WUBlastX DNA_TcMar-Tc1 52435 52818 105 + . . scaffold38966 GLEAN mRNA 52817 53455 0.505852 + . ID=CGI_10003113; scaffold38966 WUBlastX DNA_TcMar-Tc1 52817 53455 305 + . . scaffold38980 GLEAN mRNA 55987 56024 0.499055 + . ID=CGI_10003118; scaffold38980 TRF Tandem_Repeat 55987 56024 51 + . . scaffold38974 GLEAN mRNA 20566 20655 0.703347 + . ID=CGI_10003119; scaffold38974 WUBlastX DNA_Kolobok 20566 20655 61 - . . scaffold38974 GLEAN mRNA 20717 20884 0.703347 + . ID=CGI_10003119; scaffold38974 WUBlastX DNA_Kolobok 20717 20884 53 - . . scaffold38974 GLEAN mRNA 18623 18769 0.703347 + . ID=CGI_10003119; scaffold38974 WUBlastX DNA_Kolobok 18620 18769 52 + . . scaffold38974 GLEAN mRNA 18765 18863 0.703347 + . ID=CGI_10003119; scaffold38974 WUBlastX DNA_Kolobok 18765 18863 58 + . . scaffold38974 GLEAN mRNA 19548 19787 0.703347 + . ID=CGI_10003119; scaffold38974 WUBlastX DNA_Kolobok 19548 19787 103 - . . scaffold38974 GLEAN mRNA 21300 21515 0.703347 + . ID=CGI_10003119; scaffold38974 WUBlastX DNA_Kolobok 21300 21515 107 - . . scaffold38978 GLEAN mRNA 5267 5317 0.499437 + . ID=CGI_10003126; scaffold38978 TRF Tandem_Repeat 5267 5317 102 + . . scaffold38978 GLEAN mRNA 6346 6428 0.499437 + . ID=CGI_10003126; scaffold38978 TRF Tandem_Repeat 6346 6428 76 + . . scaffold38978 GLEAN mRNA 6346 6427 0.499437 + . ID=CGI_10003126; scaffold38978 TRF Tandem_Repeat 6346 6427 69 + . . scaffold38978 GLEAN mRNA 6349 6428 0.499437 + . ID=CGI_10003126; scaffold38978 TRF Tandem_Repeat 6349 6428 88 + . . scaffold38978 GLEAN mRNA 2983 3255 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_TcMar-Tc1 2983 3255 63 + . . scaffold38978 GLEAN mRNA 3096 3659 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_TcMar-Tc1 3096 3659 128 + . . scaffold38978 GLEAN mRNA 7527 7757 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_Harbinger 7527 7757 72 - . . scaffold38978 GLEAN mRNA 7880 8131 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_Harbinger 7880 8131 231 - . . scaffold38978 GLEAN mRNA 8441 8863 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_Harbinger 8441 8863 77 - . . scaffold38978 GLEAN mRNA 3195 3659 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_TcMar-Tc1 3195 3659 179 + . . scaffold38978 GLEAN mRNA 9996 10214 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_Harbinger 9996 10214 39 - . . scaffold38978 GLEAN mRNA 8435 8779 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_Harbinger 8435 8779 164 - . . scaffold38978 GLEAN mRNA 7539 7757 0.655792 - . ID=CGI_10003127; scaffold38978 WUBlastX DNA_Harbinger 7527 7757 72 - . . scaffold38978 GLEAN mRNA 7880 8131 0.655792 - . ID=CGI_10003127; scaffold38978 WUBlastX DNA_Harbinger 7880 8131 231 - . . scaffold38978 GLEAN mRNA 8441 8521 0.655792 - . ID=CGI_10003127; scaffold38978 WUBlastX DNA_Harbinger 8441 8863 77 - . . scaffold38978 GLEAN mRNA 8435 8521 0.655792 - . ID=CGI_10003127; scaffold38978 WUBlastX DNA_Harbinger 8435 8779 164 - . . scaffold39074 GLEAN mRNA 2420 2448 0.544852 + . ID=CGI_10003130; scaffold39074 TRF Tandem_Repeat 2420 2448 58 + . . scaffold39074 GLEAN mRNA 7897 8235 0.544852 + . ID=CGI_10003130; scaffold39074 TRF Tandem_Repeat 7897 8235 475 + . . scaffold39074 GLEAN mRNA 35774 35832 0.810959 + . ID=CGI_10003133; scaffold39074 TRF Tandem_Repeat 35774 35832 100 + . . scaffold39014 GLEAN mRNA 10476 10778 0.848087 + . ID=CGI_10003135; scaffold39014 WUBlastX LINE_L1 10314 10778 79 + . . scaffold39014 GLEAN mRNA 62650 62859 0.6936 + . ID=CGI_10003136; scaffold39014 WUBlastX DNA_Harbinger 62650 62859 39 + . . scaffold39014 GLEAN mRNA 61790 61972 0.6936 + . ID=CGI_10003136; scaffold39014 WUBlastX DNA_Harbinger 61790 61972 24 + . . scaffold39040 GLEAN mRNA 5031 5066 0.842724 - . ID=CGI_10003144; scaffold39040 TRF Tandem_Repeat 5031 5066 72 + . . scaffold39040 GLEAN mRNA 45600 45629 0.999598 - . ID=CGI_10003145; scaffold39040 TRF Tandem_Repeat 45600 45629 51 + . . scaffold39040 GLEAN mRNA 46484 46512 0.999598 - . ID=CGI_10003145; scaffold39040 TRF Tandem_Repeat 46484 46512 58 + . . scaffold39040 GLEAN mRNA 49458 49504 0.999598 - . ID=CGI_10003145; scaffold39040 TRF Tandem_Repeat 49458 49504 94 + . . scaffold39040 GLEAN mRNA 51124 51227 0.999598 - . ID=CGI_10003145; scaffold39040 TRF Tandem_Repeat 51124 51227 181 + . . scaffold39096 GLEAN mRNA 22040 22513 0.999949 + . ID=CGI_10003146; scaffold39096 WUBlastX LTR_Gypsy-Cigr 22040 22513 114 + . . scaffold39096 GLEAN mRNA 21905 22762 0.999949 + . ID=CGI_10003146; scaffold39096 WUBlastX LTR_Gypsy 21905 22762 64 + . . scaffold39096 GLEAN mRNA 24261 26228 0.999949 + . ID=CGI_10003146; scaffold39096 WUBlastX LTR_Gypsy 24261 26228 1116 + . . scaffold39096 GLEAN mRNA 22034 22738 0.999949 + . ID=CGI_10003146; scaffold39096 WUBlastX LTR_Gypsy-Cigr 22034 22738 108 + . . scaffold39096 GLEAN mRNA 24618 26141 0.999949 + . ID=CGI_10003146; scaffold39096 WUBlastX LTR_Gypsy-Cigr 24618 26141 1326 + . . scaffold39096 GLEAN mRNA 22912 23256 0.999949 + . ID=CGI_10003146; scaffold39096 WUBlastX LTR_Gypsy-Cigr 22912 23256 79 + . . scaffold39096 GLEAN mRNA 22783 23196 0.999949 + . ID=CGI_10003146; scaffold39096 WUBlastX LTR_Gypsy 22783 23196 74 + . . scaffold39096 GLEAN mRNA 51762 52112 0.813277 + . ID=CGI_10003149; scaffold39096 WUBlastX LTR_Gypsy 51762 52112 56 + . . scaffold39096 GLEAN mRNA 50909 51616 0.813277 + . ID=CGI_10003149; scaffold39096 WUBlastX LTR_Gypsy 50909 51616 128 + . . scaffold39096 GLEAN mRNA 51687 52097 0.813277 + . ID=CGI_10003149; scaffold39096 WUBlastX LTR_Gypsy 51687 52097 38 + . . scaffold39096 GLEAN mRNA 50963 51553 0.813277 + . ID=CGI_10003149; scaffold39096 WUBlastX LTR_Gypsy-Cigr 50963 51553 169 + . . scaffold39028 GLEAN mRNA 43375 43427 0.387839 - . ID=CGI_10003151; scaffold39028 TRF Tandem_Repeat 43375 43427 106 + . . scaffold39028 GLEAN mRNA 44451 44486 0.387839 - . ID=CGI_10003151; scaffold39028 TRF Tandem_Repeat 44451 44486 63 + . . scaffold39028 GLEAN mRNA 44660 44714 0.387839 - . ID=CGI_10003151; scaffold39028 TRF Tandem_Repeat 44660 44714 110 + . . scaffold39028 GLEAN mRNA 45605 45675 0.387839 - . ID=CGI_10003151; scaffold39028 TRF Tandem_Repeat 45605 45675 53 + . . scaffold39028 GLEAN mRNA 45606 45691 0.387839 - . ID=CGI_10003151; scaffold39028 TRF Tandem_Repeat 45606 45691 77 + . . scaffold39028 GLEAN mRNA 45605 45789 0.387839 - . ID=CGI_10003151; scaffold39028 TRF Tandem_Repeat 45605 45789 64 + . . scaffold1777 GLEAN mRNA 8288 8327 0.999547 + . ID=CGI_10003152; scaffold1777 TRF Tandem_Repeat 8288 8327 80 + . . scaffold1777 GLEAN mRNA 8712 8855 0.999547 + . ID=CGI_10003152; scaffold1777 WUBlastX LTR_Ngaro 8712 8855 26 + . . scaffold1777 GLEAN mRNA 8858 8926 0.999547 + . ID=CGI_10003152; scaffold1777 WUBlastX LTR_Ngaro 8858 8926 24 + . . scaffold1777 GLEAN mRNA 8333 8647 0.999547 + . ID=CGI_10003152; scaffold1777 WUBlastX LTR_Ngaro 8333 8647 63 + . . scaffold1777 GLEAN mRNA 8763 8855 0.999547 + . ID=CGI_10003152; scaffold1777 WUBlastX LTR_Ngaro 8763 8855 55 + . . scaffold39064 GLEAN mRNA 3437 3474 1 - . ID=CGI_10003156; scaffold39064 TRF Tandem_Repeat 3437 3474 58 + . . scaffold39064 GLEAN mRNA 4531 4753 1 - . ID=CGI_10003156; scaffold39064 TRF Tandem_Repeat 4531 4753 222 + . . scaffold39064 GLEAN mRNA 4842 5013 1 - . ID=CGI_10003156; scaffold39064 TRF Tandem_Repeat 4842 5013 217 + . . scaffold39064 GLEAN mRNA 5232 5869 1 - . ID=CGI_10003156; scaffold39064 TRF Tandem_Repeat 5232 5869 961 + . . scaffold39064 GLEAN mRNA 7258 7302 1 - . ID=CGI_10003156; scaffold39064 TRF Tandem_Repeat 7258 7302 81 + . . scaffold39064 GLEAN mRNA 20327 20374 0.245809 + . ID=CGI_10003158; scaffold39064 TRF Tandem_Repeat 20327 20374 87 + . . scaffold39064 GLEAN mRNA 26722 26756 0.245809 + . ID=CGI_10003158; scaffold39064 TRF Tandem_Repeat 26722 26756 70 + . . scaffold39122 GLEAN mRNA 23553 23696 0.999675 - . ID=CGI_10003164; scaffold39122 TRF Tandem_Repeat 23553 23696 69 + . . scaffold39122 GLEAN mRNA 24699 25601 0.999675 - . ID=CGI_10003164; scaffold39122 TRF Tandem_Repeat 24699 25601 1346 + . . scaffold39122 GLEAN mRNA 25922 26084 0.999675 - . ID=CGI_10003164; scaffold39122 TRF Tandem_Repeat 25922 26084 265 + . . scaffold39122 GLEAN mRNA 30734 30772 0.999675 - . ID=CGI_10003164; scaffold39122 TRF Tandem_Repeat 30734 30772 78 + . . scaffold39122 GLEAN mRNA 30954 31016 0.999675 - . ID=CGI_10003164; scaffold39122 TRF Tandem_Repeat 30954 31016 126 + . . scaffold39080 GLEAN mRNA 6658 7084 0.896784 - . ID=CGI_10003167; scaffold39080 TRF Tandem_Repeat 6658 7084 297 + . . scaffold39080 GLEAN mRNA 6746 7084 0.896784 - . ID=CGI_10003167; scaffold39080 TRF Tandem_Repeat 6746 7084 250 + . . scaffold39088 GLEAN mRNA 6336 6484 0.911655 - . ID=CGI_10003169; scaffold39088 TRF Tandem_Repeat 6336 6484 97 + . . scaffold39088 GLEAN mRNA 9530 10279 0.911655 - . ID=CGI_10003169; scaffold39088 TRF Tandem_Repeat 9530 10279 975 + . . scaffold39088 GLEAN mRNA 10417 10460 0.911655 - . ID=CGI_10003169; scaffold39088 TRF Tandem_Repeat 10417 10460 72 + . . scaffold39088 GLEAN mRNA 26170 26202 1 + . ID=CGI_10003172; scaffold39088 TRF Tandem_Repeat 26170 26202 57 + . . scaffold39088 GLEAN mRNA 40571 40834 0.999086 - . ID=CGI_10003173; scaffold39088 WUBlastX DNA_TcMar-Tc1 40571 40834 51 + . . scaffold39088 GLEAN mRNA 41250 41582 0.999086 - . ID=CGI_10003173; scaffold39088 WUBlastX DNA_TcMar-Tc1 41250 41582 57 + . . scaffold39088 GLEAN mRNA 41238 41435 0.999086 - . ID=CGI_10003173; scaffold39088 WUBlastX DNA_TcMar-Tc1 41238 41435 66 + . . scaffold39088 GLEAN mRNA 40134 40247 0.999086 - . ID=CGI_10003173; scaffold39088 WUBlastX DNA_TcMar-Tc1 40134 40247 20 + . . scaffold39088 GLEAN mRNA 40571 40783 0.999086 - . ID=CGI_10003173; scaffold39088 WUBlastX DNA_TcMar-Tc1 40571 40783 118 + . . scaffold39088 GLEAN mRNA 41232 41369 0.999086 - . ID=CGI_10003173; scaffold39088 WUBlastX DNA_TcMar-Tc1 41232 41369 92 + . . scaffold39088 GLEAN mRNA 40219 40566 0.999086 - . ID=CGI_10003173; scaffold39088 WUBlastX DNA_TcMar-Tc1 40219 40566 96 + . . scaffold1789 GLEAN mRNA 10612 10654 0.974284 + . ID=CGI_10003175; scaffold1789 TRF Tandem_Repeat 10612 10654 50 + . . scaffold1789 GLEAN mRNA 10597 10654 0.974284 + . ID=CGI_10003175; scaffold1789 TRF Tandem_Repeat 10597 10654 59 + . . scaffold1789 GLEAN mRNA 14867 14906 0.974284 + . ID=CGI_10003175; scaffold1789 TRF Tandem_Repeat 14867 14906 80 + . . scaffold1789 GLEAN mRNA 15280 15531 0.974284 + . ID=CGI_10003175; scaffold1789 WUBlastX DNA_Kolobok 15280 15531 43 + . . scaffold1789 GLEAN mRNA 15566 15820 0.974284 + . ID=CGI_10003175; scaffold1789 WUBlastX DNA_Kolobok 15566 15820 92 + . . scaffold1789 GLEAN mRNA 20668 20709 0.974284 + . ID=CGI_10003175; scaffold1789 TRF Tandem_Repeat 20668 20709 52 + . . scaffold1789 GLEAN mRNA 16837 17133 0.974284 + . ID=CGI_10003175; scaffold1789 WUBlastX DNA_Kolobok 16837 17133 82 + . . scaffold1789 GLEAN mRNA 17573 17899 0.974284 + . ID=CGI_10003175; scaffold1789 WUBlastX DNA_Kolobok 17573 17899 93 - . . scaffold1789 GLEAN mRNA 27632 27676 0.651132 - . ID=CGI_10003176; scaffold1789 TRF Tandem_Repeat 27632 27676 90 + . . scaffold1789 GLEAN mRNA 28483 28516 0.651132 - . ID=CGI_10003176; scaffold1789 TRF Tandem_Repeat 28483 28516 50 + . . scaffold1789 GLEAN mRNA 28833 28957 0.651132 - . ID=CGI_10003176; scaffold1789 TRF Tandem_Repeat 28833 28957 189 + . . scaffold1789 GLEAN mRNA 26345 26623 0.651132 - . ID=CGI_10003176; scaffold1789 WUBlastX DNA_TcMar-Tc1 26345 26623 73 - . . scaffold1789 GLEAN mRNA 26067 26219 0.651132 - . ID=CGI_10003176; scaffold1789 WUBlastX DNA_TcMar-Tc1 26067 26219 69 - . . scaffold1789 GLEAN mRNA 26218 26283 0.651132 - . ID=CGI_10003176; scaffold1789 WUBlastX DNA_TcMar-Tc1 26218 26283 56 - . . scaffold1789 GLEAN mRNA 26240 26605 0.651132 - . ID=CGI_10003176; scaffold1789 WUBlastX DNA_TcMar-Tc1 26240 26605 61 - . . scaffold1789 GLEAN mRNA 42110 42165 0.351497 + . ID=CGI_10003177; scaffold1789 TRF Tandem_Repeat 42110 42165 94 + . . scaffold1789 GLEAN mRNA 50716 50785 0.351497 + . ID=CGI_10003177; scaffold1789 TRF Tandem_Repeat 50716 50785 72 + . . scaffold1789 GLEAN mRNA 58243 58291 0.47337 - . ID=CGI_10003178; scaffold1789 TRF Tandem_Repeat 58243 58291 98 + . . scaffold1789 GLEAN mRNA 59511 59553 0.47337 - . ID=CGI_10003178; scaffold1789 TRF Tandem_Repeat 59511 59553 86 + . . scaffold39078 GLEAN mRNA 18002 18042 1 + . ID=CGI_10003180; scaffold39078 TRF Tandem_Repeat 18002 18042 82 + . . scaffold39078 GLEAN mRNA 19469 19496 1 + . ID=CGI_10003180; scaffold39078 TRF Tandem_Repeat 19469 19496 56 + . . scaffold39078 GLEAN mRNA 29530 29583 0.639971 - . ID=CGI_10003181; scaffold39078 TRF Tandem_Repeat 29530 29583 92 + . . scaffold39134 GLEAN mRNA 11401 12290 0.556498 - . ID=CGI_10003182; scaffold39134 TRF Tandem_Repeat 11401 12290 1192 + . . scaffold39134 GLEAN mRNA 22270 23332 1 + . ID=CGI_10003184; scaffold39134 TRF Tandem_Repeat 22270 23332 1740 + . . scaffold39134 GLEAN mRNA 22673 22746 1 + . ID=CGI_10003184; scaffold39134 TRF Tandem_Repeat 22673 22746 57 + . . scaffold39134 GLEAN mRNA 22767 22837 1 + . ID=CGI_10003184; scaffold39134 TRF Tandem_Repeat 22767 22837 51 + . . scaffold39134 GLEAN mRNA 26705 26769 1 + . ID=CGI_10003184; scaffold39134 TRF Tandem_Repeat 26705 26769 121 + . . scaffold39134 GLEAN mRNA 27257 27300 1 + . ID=CGI_10003184; scaffold39134 TRF Tandem_Repeat 27257 27300 81 + . . scaffold39134 GLEAN mRNA 39779 39843 0.78688 - . ID=CGI_10003186; scaffold39134 TRF Tandem_Repeat 39779 39843 87 + . . scaffold39134 GLEAN mRNA 41899 42348 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LINE_RTE-X 41899 42348 57 - . . scaffold39134 GLEAN mRNA 42390 42575 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LINE_RTE-X 42390 42575 47 - . . scaffold39134 GLEAN mRNA 48751 48876 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 48751 48876 28 + . . scaffold39134 GLEAN mRNA 42067 42399 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LINE_RTE-X 42067 42399 52 - . . scaffold39134 GLEAN mRNA 48763 48900 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 48763 48900 25 + . . scaffold39134 GLEAN mRNA 45196 45354 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 45196 45354 69 + . . scaffold39134 GLEAN mRNA 45350 45676 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 45350 45676 91 + . . scaffold39134 GLEAN mRNA 42064 42348 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LINE_RTE-X 42064 42348 89 - . . scaffold39134 GLEAN mRNA 45356 45631 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 45356 45631 168 + . . scaffold39134 GLEAN mRNA 45976 46020 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 45976 46020 22 + . . scaffold39134 GLEAN mRNA 50783 50838 0.78688 - . ID=CGI_10003186; scaffold39134 TRF Tandem_Repeat 50783 50838 112 + . . scaffold39134 GLEAN mRNA 55333 56368 0.78688 - . ID=CGI_10003186; scaffold39134 TRF Tandem_Repeat 55333 56368 1337 + . . scaffold39134 GLEAN mRNA 57827 57873 0.78688 - . ID=CGI_10003186; scaffold39134 TRF Tandem_Repeat 57827 57873 62 + . . scaffold39134 GLEAN mRNA 49506 50201 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 49506 50201 191 + . . scaffold39134 GLEAN mRNA 54674 55141 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX RC_Helitron 54674 55141 43 - . . scaffold39134 GLEAN mRNA 50197 50379 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 50197 50379 117 + . . scaffold39134 GLEAN mRNA 50110 50523 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 50110 50523 83 + . . scaffold39134 GLEAN mRNA 49420 49656 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 49420 49656 145 + . . scaffold39134 GLEAN mRNA 49686 50204 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 49686 50204 319 + . . scaffold39134 GLEAN mRNA 49013 49435 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 49013 49435 189 + . . scaffold39134 GLEAN mRNA 48923 49456 0.78688 - . ID=CGI_10003186; scaffold39134 WUBlastX LTR_Gypsy 48923 49456 178 + . . scaffold1422 GLEAN mRNA 6295 6321 0.556113 - . ID=CGI_10003187; scaffold1422 TRF Tandem_Repeat 6295 6321 54 + . . scaffold1422 GLEAN mRNA 17015 17065 0.556113 - . ID=CGI_10003187; scaffold1422 TRF Tandem_Repeat 17015 17065 93 + . . scaffold1422 GLEAN mRNA 17679 17704 0.556113 - . ID=CGI_10003187; scaffold1422 TRF Tandem_Repeat 17679 17704 52 + . . scaffold39120 GLEAN mRNA 46310 46471 0.858496 + . ID=CGI_10003188; scaffold39120 WUBlastX LTR_Ngaro 46310 46471 41 - . . scaffold39120 GLEAN mRNA 47978 48142 0.858496 + . ID=CGI_10003188; scaffold39120 WUBlastX DNA_IS4EU 47978 48142 58 - . . scaffold39120 GLEAN mRNA 46014 46286 0.858496 + . ID=CGI_10003188; scaffold39120 WUBlastX LTR_Ngaro 46014 46286 81 - . . scaffold39120 GLEAN mRNA 47978 48259 0.858496 + . ID=CGI_10003188; scaffold39120 WUBlastX DNA_Kolobok-IS4 47978 48259 27 - . . scaffold39120 GLEAN mRNA 45981 46208 0.858496 + . ID=CGI_10003188; scaffold39120 WUBlastX LTR_Ngaro 45981 46208 102 - . . scaffold39120 GLEAN mRNA 46147 46365 0.858496 + . ID=CGI_10003188; scaffold39120 WUBlastX LTR_Ngaro 46147 46365 56 - . . scaffold39120 GLEAN mRNA 46397 46558 0.858496 + . ID=CGI_10003188; scaffold39120 WUBlastX LTR_Ngaro 46397 46558 33 - . . scaffold39120 GLEAN mRNA 54291 54331 0.99067 + . ID=CGI_10003189; scaffold39120 TRF Tandem_Repeat 54291 54331 82 + . . scaffold1141 GLEAN mRNA 8670 8700 0.528385 + . ID=CGI_10003193; scaffold1141 TRF Tandem_Repeat 8670 8700 62 + . . scaffold39126 GLEAN mRNA 16819 16846 0.68165 + . ID=CGI_10003195; scaffold39126 TRF Tandem_Repeat 16819 16846 56 + . . scaffold39126 GLEAN mRNA 23170 23215 0.68165 + . ID=CGI_10003195; scaffold39126 TRF Tandem_Repeat 23170 23215 92 + . . scaffold39158 GLEAN mRNA 11164 11218 0.961217 - . ID=CGI_10003198; scaffold39158 TRF Tandem_Repeat 11164 11218 58 + . . scaffold1842 GLEAN mRNA 48022 48195 0.990768 - . ID=CGI_10003201; scaffold1842 TRF Tandem_Repeat 48022 48195 200 + . . scaffold1842 GLEAN mRNA 49426 49455 0.990768 - . ID=CGI_10003201; scaffold1842 TRF Tandem_Repeat 49426 49455 60 + . . scaffold1842 GLEAN mRNA 52665 52696 0.990768 - . ID=CGI_10003201; scaffold1842 TRF Tandem_Repeat 52665 52696 64 + . . scaffold1842 GLEAN mRNA 54552 54904 0.990768 - . ID=CGI_10003201; scaffold1842 TRF Tandem_Repeat 54552 54904 535 + . . scaffold1842 GLEAN mRNA 54702 54801 0.990768 - . ID=CGI_10003201; scaffold1842 TRF Tandem_Repeat 54702 54801 60 + . . scaffold1842 GLEAN mRNA 54552 54904 0.990768 - . ID=CGI_10003201; scaffold1842 TRF Tandem_Repeat 54552 54904 544 + . . scaffold1842 GLEAN mRNA 58675 59151 0.990768 - . ID=CGI_10003201; scaffold1842 WUBlastX LINE_L2 58675 59151 101 - . . scaffold1026 GLEAN mRNA 28267 28333 0.532297 - . ID=CGI_10003206; scaffold1026 TRF Tandem_Repeat 28267 28333 134 + . . scaffold39198 GLEAN mRNA 46312 46349 0.679892 + . ID=CGI_10003207; scaffold39198 TRF Tandem_Repeat 46312 46349 76 + . . scaffold39198 GLEAN mRNA 46413 46444 0.679892 + . ID=CGI_10003207; scaffold39198 TRF Tandem_Repeat 46413 46444 55 + . . scaffold39198 GLEAN mRNA 46494 46533 0.679892 + . ID=CGI_10003207; scaffold39198 TRF Tandem_Repeat 46494 46533 80 + . . scaffold39198 GLEAN mRNA 46714 46758 0.679892 + . ID=CGI_10003207; scaffold39198 TRF Tandem_Repeat 46714 46758 90 + . . scaffold39198 GLEAN mRNA 46870 46903 0.679892 + . ID=CGI_10003207; scaffold39198 TRF Tandem_Repeat 46870 46903 68 + . . scaffold39198 GLEAN mRNA 56481 56591 1 + . ID=CGI_10003208; scaffold39198 TRF Tandem_Repeat 56481 56591 88 + . . scaffold39198 GLEAN mRNA 56500 56712 1 + . ID=CGI_10003208; scaffold39198 TRF Tandem_Repeat 56500 56712 356 + . . scaffold39198 GLEAN mRNA 56516 56710 1 + . ID=CGI_10003208; scaffold39198 TRF Tandem_Repeat 56516 56710 141 + . . scaffold39202 GLEAN mRNA 3843 3894 1 - . ID=CGI_10003211; scaffold39202 TRF Tandem_Repeat 3843 3894 104 + . . scaffold39202 GLEAN mRNA 4956 5598 1 - . ID=CGI_10003211; scaffold39202 TRF Tandem_Repeat 4956 5598 318 + . . scaffold39202 GLEAN mRNA 4963 5598 1 - . ID=CGI_10003211; scaffold39202 TRF Tandem_Repeat 4963 5598 433 + . . scaffold39202 GLEAN mRNA 4954 5598 1 - . ID=CGI_10003211; scaffold39202 TRF Tandem_Repeat 4954 5598 453 + . . scaffold39202 GLEAN mRNA 12042 12150 0.996598 - . ID=CGI_10003212; scaffold39202 TRF Tandem_Repeat 12042 12150 155 + . . scaffold39202 GLEAN mRNA 14901 14960 0.996598 - . ID=CGI_10003212; scaffold39202 TRF Tandem_Repeat 14901 14960 111 + . . scaffold39202 GLEAN mRNA 16039 16311 0.996598 - . ID=CGI_10003212; scaffold39202 TRF Tandem_Repeat 16039 16311 366 + . . scaffold39202 GLEAN mRNA 19320 21180 0.996598 - . ID=CGI_10003212; scaffold39202 TRF Tandem_Repeat 19320 21180 3202 + . . scaffold39202 GLEAN mRNA 21200 21235 0.996598 - . ID=CGI_10003212; scaffold39202 TRF Tandem_Repeat 21200 21235 54 + . . scaffold39202 GLEAN mRNA 54893 54937 0.935312 + . ID=CGI_10003213; scaffold39202 TRF Tandem_Repeat 54893 54937 65 + . . scaffold39196 GLEAN mRNA 29123 30008 0.5589 - . ID=CGI_10003215; scaffold39196 TRF Tandem_Repeat 29123 30008 1047 + . . scaffold39196 GLEAN mRNA 31073 31114 0.5589 - . ID=CGI_10003215; scaffold39196 TRF Tandem_Repeat 31073 31114 50 + . . scaffold39196 GLEAN mRNA 22444 24036 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX LTR_Gypsy 22444 24036 1043 + . . scaffold39196 GLEAN mRNA 24003 25796 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX LTR_Gypsy 24003 25796 1285 + . . scaffold39196 GLEAN mRNA 25931 25993 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX LTR_ERVK 25931 25993 22 + . . scaffold39196 GLEAN mRNA 43354 43495 0.5589 - . ID=CGI_10003215; scaffold39196 TRF Tandem_Repeat 43354 43495 96 + . . scaffold39196 GLEAN mRNA 43606 43631 0.5589 - . ID=CGI_10003215; scaffold39196 TRF Tandem_Repeat 43606 43631 52 + . . scaffold39196 GLEAN mRNA 37675 38247 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX RC_Helitron 37675 38247 113 - . . scaffold39196 GLEAN mRNA 37921 38223 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX RC_Helitron 37921 38223 189 - . . scaffold39196 GLEAN mRNA 38223 38399 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX RC_Helitron 38223 38399 91 - . . scaffold39196 GLEAN mRNA 38396 38824 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX RC_Helitron 38396 38824 45 - . . scaffold39196 GLEAN mRNA 37169 37273 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX RC_Helitron 37169 37273 24 - . . scaffold39196 GLEAN mRNA 38815 39003 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX RC_Helitron 38815 39003 69 - . . scaffold39196 GLEAN mRNA 37939 38328 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX RC_Helitron 37939 38328 137 - . . scaffold39196 GLEAN mRNA 49826 50152 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX DNA_Merlin 49826 50152 73 + . . scaffold39196 GLEAN mRNA 50185 50262 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX DNA_Merlin 50185 50262 40 + . . scaffold39196 GLEAN mRNA 50161 50250 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX DNA_Merlin 50161 50250 34 + . . scaffold39196 GLEAN mRNA 50391 50810 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX DNA_Merlin 50391 50810 158 + . . scaffold39196 GLEAN mRNA 22444 24036 0.999968 + . ID=CGI_10003216; scaffold39196 WUBlastX LTR_Gypsy 22444 24036 1043 + . . scaffold39196 GLEAN mRNA 24003 25796 0.999968 + . ID=CGI_10003216; scaffold39196 WUBlastX LTR_Gypsy 24003 25796 1285 + . . scaffold39196 GLEAN mRNA 25931 25993 0.999968 + . ID=CGI_10003216; scaffold39196 WUBlastX LTR_ERVK 25931 25993 22 + . . scaffold39196 GLEAN mRNA 43354 43495 0.583111 + . ID=CGI_10003218; scaffold39196 TRF Tandem_Repeat 43354 43495 96 + . . scaffold39196 GLEAN mRNA 43606 43631 0.583111 + . ID=CGI_10003218; scaffold39196 TRF Tandem_Repeat 43606 43631 52 + . . scaffold39196 GLEAN mRNA 49826 50152 0.583111 + . ID=CGI_10003218; scaffold39196 WUBlastX DNA_Merlin 49826 50152 73 + . . scaffold39196 GLEAN mRNA 50185 50262 0.583111 + . ID=CGI_10003218; scaffold39196 WUBlastX DNA_Merlin 50185 50262 40 + . . scaffold39196 GLEAN mRNA 50161 50250 0.583111 + . ID=CGI_10003218; scaffold39196 WUBlastX DNA_Merlin 50161 50250 34 + . . scaffold39196 GLEAN mRNA 50391 50810 0.583111 + . ID=CGI_10003218; scaffold39196 WUBlastX DNA_Merlin 50391 50810 158 + . . scaffold39180 GLEAN mRNA 65421 65523 1 - . ID=CGI_10003220; scaffold39180 TRF Tandem_Repeat 65421 65523 77 + . . scaffold39222 GLEAN mRNA 6462 6503 0.920211 - . ID=CGI_10003222; scaffold39222 TRF Tandem_Repeat 6462 6503 84 + . . scaffold39222 GLEAN mRNA 6502 6673 0.920211 - . ID=CGI_10003222; scaffold39222 TRF Tandem_Repeat 6502 6673 164 + . . scaffold39222 GLEAN mRNA 6503 6673 0.920211 - . ID=CGI_10003222; scaffold39222 TRF Tandem_Repeat 6503 6673 186 + . . scaffold39222 GLEAN mRNA 8809 8858 0.920211 - . ID=CGI_10003222; scaffold39222 TRF Tandem_Repeat 8809 8858 100 + . . scaffold39222 GLEAN mRNA 14395 14434 0.92002 - . ID=CGI_10003223; scaffold39222 TRF Tandem_Repeat 14395 14434 53 + . . scaffold39222 GLEAN mRNA 28176 28235 1 + . ID=CGI_10003224; scaffold39222 TRF Tandem_Repeat 28176 28235 111 + . . scaffold39222 GLEAN mRNA 33628 33702 1 + . ID=CGI_10003224; scaffold39222 TRF Tandem_Repeat 33628 33702 150 + . . scaffold39222 GLEAN mRNA 55020 55052 0.911807 - . ID=CGI_10003225; scaffold39222 TRF Tandem_Repeat 55020 55052 59 + . . scaffold39214 GLEAN mRNA 9894 9960 0.726315 + . ID=CGI_10003231; scaffold39214 TRF Tandem_Repeat 9894 9960 89 + . . scaffold39214 GLEAN mRNA 14291 14348 0.726315 + . ID=CGI_10003231; scaffold39214 TRF Tandem_Repeat 14291 14348 73 + . . scaffold39214 GLEAN mRNA 15704 15757 0.726315 + . ID=CGI_10003231; scaffold39214 TRF Tandem_Repeat 15704 15757 65 + . . scaffold39214 GLEAN mRNA 15703 15757 0.726315 + . ID=CGI_10003231; scaffold39214 TRF Tandem_Repeat 15703 15757 85 + . . scaffold39214 GLEAN mRNA 25901 25963 0.726315 + . ID=CGI_10003231; scaffold39214 TRF Tandem_Repeat 25901 25963 126 + . . scaffold39214 GLEAN mRNA 28747 29733 0.503937 - . ID=CGI_10003232; scaffold39214 WUBlastX DNA_Academ 28747 30750 925 - . . scaffold39212 GLEAN mRNA 45469 45954 0.415387 - . ID=CGI_10003233; scaffold39212 WUBlastX DNA_Sola 45469 45954 213 - . . scaffold39212 GLEAN mRNA 46459 47070 0.415387 - . ID=CGI_10003233; scaffold39212 WUBlastX DNA_Sola 46459 47070 91 - . . scaffold39212 GLEAN mRNA 46480 47265 0.415387 - . ID=CGI_10003233; scaffold39212 WUBlastX DNA_Sola 46480 47265 76 - . . scaffold39212 GLEAN mRNA 46061 46516 0.415387 - . ID=CGI_10003233; scaffold39212 WUBlastX DNA_Sola 46061 46516 98 - . . scaffold39212 GLEAN mRNA 53097 53489 0.415387 - . ID=CGI_10003233; scaffold39212 WUBlastX DNA_hAT-Tip100 53097 53489 35 - . . scaffold39212 GLEAN mRNA 54581 55246 0.415387 - . ID=CGI_10003233; scaffold39212 WUBlastX DNA_hAT-Tip100 54581 55246 264 - . . scaffold39212 GLEAN mRNA 53067 53282 0.415387 - . ID=CGI_10003233; scaffold39212 WUBlastX DNA_hAT-Tip100 53067 53282 69 - . . scaffold39212 GLEAN mRNA 53419 53571 0.415387 - . ID=CGI_10003233; scaffold39212 WUBlastX DNA_hAT-Tip100 53419 53571 33 - . . scaffold39212 GLEAN mRNA 56519 56752 0.415387 - . ID=CGI_10003233; scaffold39212 WUBlastX DNA_hAT-Tip100 56519 56752 37 - . . scaffold39212 GLEAN mRNA 53094 53351 0.415387 - . ID=CGI_10003233; scaffold39212 WUBlastX DNA_hAT-Tip100 53094 53351 52 - . . scaffold39212 GLEAN mRNA 54215 55078 0.415387 - . ID=CGI_10003233; scaffold39212 WUBlastX DNA_hAT-Tip100 54215 55078 53 - . . scaffold1464 GLEAN mRNA 2558 2998 0.549445 + . ID=CGI_10003234; scaffold1464 WUBlastX LTR_Gypsy 2558 2998 303 + . . scaffold1464 GLEAN mRNA 2336 2596 0.549445 + . ID=CGI_10003234; scaffold1464 WUBlastX LTR_Gypsy 2336 2596 78 + . . scaffold1464 GLEAN mRNA 2980 3441 0.549445 + . ID=CGI_10003234; scaffold1464 WUBlastX LTR_Gypsy 2980 3441 314 + . . scaffold1464 GLEAN mRNA 2423 2977 0.549445 + . ID=CGI_10003234; scaffold1464 WUBlastX LTR_Gypsy 2423 2977 235 + . . scaffold1464 GLEAN mRNA 2378 2596 0.549445 + . ID=CGI_10003234; scaffold1464 WUBlastX LTR_Gypsy 2378 2596 88 + . . scaffold1464 GLEAN mRNA 3016 3591 0.549445 + . ID=CGI_10003234; scaffold1464 WUBlastX LTR_Gypsy 3016 3591 187 + . . scaffold1464 GLEAN mRNA 6982 7284 0.549445 + . ID=CGI_10003234; scaffold1464 WUBlastX LINE_Penelope 6982 7284 31 - . . scaffold1464 GLEAN mRNA 49012 49049 1 + . ID=CGI_10003238; scaffold1464 TRF Tandem_Repeat 49012 49049 76 + . . scaffold1464 GLEAN mRNA 53124 53183 1 + . ID=CGI_10003238; scaffold1464 TRF Tandem_Repeat 53124 53183 120 + . . scaffold1464 GLEAN mRNA 61710 61750 1 + . ID=CGI_10003238; scaffold1464 TRF Tandem_Repeat 61710 61750 82 + . . scaffold39240 GLEAN mRNA 14252 14276 1 + . ID=CGI_10003244; scaffold39240 TRF Tandem_Repeat 14252 14276 50 + . . scaffold39240 GLEAN mRNA 20951 20998 0.999676 + . ID=CGI_10003246; scaffold39240 TRF Tandem_Repeat 20951 20998 96 + . . scaffold39240 GLEAN mRNA 22383 22434 0.999676 + . ID=CGI_10003246; scaffold39240 TRF Tandem_Repeat 22383 22434 104 + . . scaffold39240 GLEAN mRNA 22494 22518 0.999676 + . ID=CGI_10003246; scaffold39240 TRF Tandem_Repeat 22494 22518 50 + . . scaffold39240 GLEAN mRNA 36714 37457 0.999618 - . ID=CGI_10003247; scaffold39240 WUBlastX DNA_MuDR 36714 37457 247 + . . scaffold39240 GLEAN mRNA 37254 37517 0.999618 - . ID=CGI_10003247; scaffold39240 WUBlastX DNA_MuDR 37254 37517 40 + . . scaffold39514 GLEAN mRNA 4593 4708 1 + . ID=CGI_10003250; scaffold39514 TRF Tandem_Repeat 4593 4708 130 + . . scaffold39514 GLEAN mRNA 5844 5886 1 + . ID=CGI_10003250; scaffold39514 TRF Tandem_Repeat 5844 5886 86 + . . scaffold39174 GLEAN mRNA 49493 49559 0.801757 + . ID=CGI_10003256; scaffold39174 TRF Tandem_Repeat 49493 49559 89 + . . scaffold39174 GLEAN mRNA 51948 51986 0.801757 + . ID=CGI_10003256; scaffold39174 TRF Tandem_Repeat 51948 51986 78 + . . scaffold39174 GLEAN mRNA 52718 52784 0.801757 + . ID=CGI_10003256; scaffold39174 TRF Tandem_Repeat 52718 52784 89 + . . scaffold39258 GLEAN mRNA 17381 17403 1 + . ID=CGI_10003262; scaffold39258 TRF Tandem_Repeat 17221 17403 170 + . . scaffold39258 GLEAN mRNA 22748 22903 0.999661 - . ID=CGI_10003263; scaffold39258 WUBlastX DNA_hAT-Tip100 22748 22903 90 - . . scaffold39258 GLEAN mRNA 23489 23620 0.999661 - . ID=CGI_10003263; scaffold39258 WUBlastX DNA_hAT-Tip100 23489 23620 35 - . . scaffold39258 GLEAN mRNA 22763 23032 0.999661 - . ID=CGI_10003263; scaffold39258 WUBlastX DNA_hAT-Tip100 22763 23032 47 - . . scaffold39258 GLEAN mRNA 42662 42692 1 + . ID=CGI_10003265; scaffold39258 TRF Tandem_Repeat 42662 42692 62 + . . scaffold39258 GLEAN mRNA 45870 45935 1 + . ID=CGI_10003265; scaffold39258 TRF Tandem_Repeat 45870 45935 132 + . . scaffold39258 GLEAN mRNA 51234 51289 0.961071 + . ID=CGI_10003266; scaffold39258 TRF Tandem_Repeat 51234 51289 85 + . . scaffold39258 GLEAN mRNA 60194 60231 0.87948 - . ID=CGI_10003267; scaffold39258 TRF Tandem_Repeat 60194 60231 67 + . . scaffold39268 GLEAN mRNA 25873 25923 0.768779 - . ID=CGI_10003274; scaffold39268 TRF Tandem_Repeat 25873 25923 93 + . . scaffold39268 GLEAN mRNA 25964 25998 0.768779 - . ID=CGI_10003274; scaffold39268 TRF Tandem_Repeat 25964 25998 70 + . . scaffold39268 GLEAN mRNA 18960 19391 0.768779 - . ID=CGI_10003274; scaffold39268 WUBlastX LINE_L2 18960 19391 220 + . . scaffold39268 GLEAN mRNA 17699 18346 0.768779 - . ID=CGI_10003274; scaffold39268 WUBlastX LINE_L2 17699 18346 132 + . . scaffold39268 GLEAN mRNA 19319 20764 0.768779 - . ID=CGI_10003274; scaffold39268 WUBlastX LINE_L2 19319 20764 494 + . . scaffold39268 GLEAN mRNA 18870 19376 0.768779 - . ID=CGI_10003274; scaffold39268 WUBlastX LINE_L2 18870 19376 37 + . . scaffold39268 GLEAN mRNA 19029 19508 0.768779 - . ID=CGI_10003274; scaffold39268 WUBlastX LINE_L2 19029 19508 228 + . . scaffold39268 GLEAN mRNA 17873 18445 0.768779 - . ID=CGI_10003274; scaffold39268 WUBlastX LINE_L2 17873 18445 101 + . . scaffold39268 GLEAN mRNA 46303 47120 0.736622 - . ID=CGI_10003275; scaffold39268 TRF Tandem_Repeat 46303 47120 867 + . . scaffold39268 GLEAN mRNA 47158 47254 0.736622 - . ID=CGI_10003275; scaffold39268 TRF Tandem_Repeat 47158 47254 126 + . . scaffold39268 GLEAN mRNA 47609 47812 0.736622 - . ID=CGI_10003275; scaffold39268 TRF Tandem_Repeat 47609 47812 243 + . . scaffold39268 GLEAN mRNA 40633 40989 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX DNA_Harbinger 40633 40989 204 + . . scaffold39268 GLEAN mRNA 40167 40610 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX DNA_Harbinger 40167 40610 176 + . . scaffold39268 GLEAN mRNA 40729 40989 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX DNA_Harbinger 40729 40989 232 + . . scaffold39268 GLEAN mRNA 43735 43914 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX DNA_Harbinger 43735 43914 63 - . . scaffold39268 GLEAN mRNA 45842 46000 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX DNA_Harbinger 45842 46000 71 - . . scaffold39268 GLEAN mRNA 57305 57334 0.736622 - . ID=CGI_10003275; scaffold39268 TRF Tandem_Repeat 57305 57334 60 + . . scaffold39268 GLEAN mRNA 49476 50585 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX DNA_En-Spm 49476 50585 441 - . . scaffold39268 GLEAN mRNA 50564 51769 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX DNA_En-Spm 50564 51769 819 - . . scaffold39268 GLEAN mRNA 56706 57089 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX LINE_RTE-X 56706 57089 120 + . . scaffold39268 GLEAN mRNA 56706 57005 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX LINE_RTE-X 56706 57005 175 + . . scaffold39268 GLEAN mRNA 51125 52084 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX DNA_En-Spm 51125 52084 24 - . . scaffold39268 GLEAN mRNA 56667 57146 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX LINE_RTE-X 56667 57146 116 + . . scaffold39268 GLEAN mRNA 63398 63640 0.898511 + . ID=CGI_10003276; scaffold39268 WUBlastX DNA_MuDR 63398 63640 86 + . . scaffold39268 GLEAN mRNA 64111 64428 0.898511 + . ID=CGI_10003276; scaffold39268 WUBlastX DNA_MuDR 64111 64428 69 + . . scaffold39268 GLEAN mRNA 63809 63976 0.898511 + . ID=CGI_10003276; scaffold39268 WUBlastX DNA_MuDR 63809 63976 80 + . . scaffold39268 GLEAN mRNA 64120 64374 0.898511 + . ID=CGI_10003276; scaffold39268 WUBlastX DNA_MuDR 64120 64374 82 + . . scaffold39268 GLEAN mRNA 63437 63634 0.898511 + . ID=CGI_10003276; scaffold39268 WUBlastX DNA_MuDR 63437 63634 97 + . . scaffold39268 GLEAN mRNA 63857 64090 0.898511 + . ID=CGI_10003276; scaffold39268 WUBlastX DNA_MuDR 63857 64090 34 + . . scaffold39268 GLEAN mRNA 63731 63985 0.898511 + . ID=CGI_10003276; scaffold39268 WUBlastX DNA_MuDR 63731 63985 64 + . . scaffold39268 GLEAN mRNA 67021 67054 0.898511 + . ID=CGI_10003276; scaffold39268 TRF Tandem_Repeat 67021 67054 59 + . . scaffold39274 GLEAN mRNA 66346 66397 0.99999 - . ID=CGI_10003279; scaffold39274 TRF Tandem_Repeat 66346 66397 97 + . . scaffold39274 GLEAN mRNA 66525 66568 0.99999 - . ID=CGI_10003279; scaffold39274 TRF Tandem_Repeat 66525 66568 79 + . . scaffold838 GLEAN mRNA 43839 43887 0.544755 - . ID=CGI_10003281; scaffold838 TRF Tandem_Repeat 43839 43887 66 + . . scaffold27 GLEAN mRNA 11465 11515 0.999676 + . ID=CGI_10003285; scaffold27 TRF Tandem_Repeat 11465 11515 102 + . . scaffold27 GLEAN mRNA 15246 15480 0.999676 + . ID=CGI_10003285; scaffold27 TRF Tandem_Repeat 15246 15480 191 + . . scaffold1485 GLEAN mRNA 6525 6572 0.98054 + . ID=CGI_10003288; scaffold1485 TRF Tandem_Repeat 6525 6572 96 + . . scaffold1485 GLEAN mRNA 6572 6609 0.98054 + . ID=CGI_10003288; scaffold1485 TRF Tandem_Repeat 6572 6609 76 + . . scaffold1485 GLEAN mRNA 30773 31072 1 + . ID=CGI_10003290; scaffold1485 TRF Tandem_Repeat 30773 31072 519 + . . scaffold1485 GLEAN mRNA 29632 29778 1 + . ID=CGI_10003290; scaffold1485 WUBlastX DNA_hAT 29569 29778 66 + . . scaffold1485 GLEAN mRNA 47885 47909 0.999437 - . ID=CGI_10003293; scaffold1485 TRF Tandem_Repeat 47885 47909 50 + . . scaffold1485 GLEAN mRNA 48294 48602 0.999437 - . ID=CGI_10003293; scaffold1485 WUBlastX LINE_RTE-X 48294 48602 185 - . . scaffold1485 GLEAN mRNA 48601 48639 0.999437 - . ID=CGI_10003293; scaffold1485 WUBlastX LINE_RTE-X 48601 49017 194 - . . scaffold1485 GLEAN mRNA 48165 48551 0.999437 - . ID=CGI_10003293; scaffold1485 WUBlastX LINE_RTE-X 48165 48551 133 - . . scaffold326 GLEAN mRNA 2944 2975 0.855561 + . ID=CGI_10003294; scaffold326 TRF Tandem_Repeat 2944 2975 55 + . . scaffold326 GLEAN mRNA 4514 6473 0.855561 + . ID=CGI_10003294; scaffold326 TRF Tandem_Repeat 4514 6473 2226 + . . scaffold326 GLEAN mRNA 5448 5490 0.855561 + . ID=CGI_10003294; scaffold326 TRF Tandem_Repeat 5448 5490 59 + . . scaffold326 GLEAN mRNA 5445 5493 0.855561 + . ID=CGI_10003294; scaffold326 TRF Tandem_Repeat 5445 5493 62 + . . scaffold326 GLEAN mRNA 6634 6711 0.855561 + . ID=CGI_10003294; scaffold326 TRF Tandem_Repeat 6634 6711 52 + . . scaffold326 GLEAN mRNA 406 1149 0.855561 + . ID=CGI_10003294; scaffold326 WUBlastX DNA_TcMar-Tc1 406 1149 329 + . . scaffold326 GLEAN mRNA 2944 2975 0.980924 - . ID=CGI_10003295; scaffold326 TRF Tandem_Repeat 2944 2975 55 + . . scaffold326 GLEAN mRNA 4514 6473 0.980924 - . ID=CGI_10003295; scaffold326 TRF Tandem_Repeat 4514 6473 2226 + . . scaffold326 GLEAN mRNA 5448 5490 0.980924 - . ID=CGI_10003295; scaffold326 TRF Tandem_Repeat 5448 5490 59 + . . scaffold326 GLEAN mRNA 5445 5493 0.980924 - . ID=CGI_10003295; scaffold326 TRF Tandem_Repeat 5445 5493 62 + . . scaffold326 GLEAN mRNA 6634 6711 0.980924 - . ID=CGI_10003295; scaffold326 TRF Tandem_Repeat 6634 6711 52 + . . scaffold326 GLEAN mRNA 66659 67006 0.649408 + . ID=CGI_10003297; scaffold326 WUBlastX LTR_Gypsy 66659 67006 187 + . . scaffold326 GLEAN mRNA 66602 66615 0.649408 + . ID=CGI_10003297; scaffold326 WUBlastX LTR_Gypsy 66514 66615 35 + . . scaffold326 GLEAN mRNA 66602 66639 0.649408 + . ID=CGI_10003297; scaffold326 WUBlastX LTR_Gypsy 66541 66639 25 + . . scaffold1455 GLEAN mRNA 3400 3527 0.999993 + . ID=CGI_10003298; scaffold1455 TRF Tandem_Repeat 3400 3527 102 + . . scaffold1455 GLEAN mRNA 6762 6803 0.999993 + . ID=CGI_10003298; scaffold1455 TRF Tandem_Repeat 6762 6803 84 + . . scaffold1455 GLEAN mRNA 26202 26248 0.99967 - . ID=CGI_10003299; scaffold1455 TRF Tandem_Repeat 26202 26248 58 + . . scaffold1455 GLEAN mRNA 26202 26248 0.99967 - . ID=CGI_10003299; scaffold1455 TRF Tandem_Repeat 26202 26248 76 + . . scaffold1455 GLEAN mRNA 26958 27006 0.99967 - . ID=CGI_10003299; scaffold1455 TRF Tandem_Repeat 26958 27006 98 + . . scaffold1455 GLEAN mRNA 57372 58085 0.522943 - . ID=CGI_10003301; scaffold1455 WUBlastX LTR_Gypsy 57372 58085 83 - . . scaffold39334 GLEAN mRNA 5422 5470 1 - . ID=CGI_10003302; scaffold39334 TRF Tandem_Repeat 5422 5470 57 + . . scaffold39368 GLEAN mRNA 33626 33693 0.996296 + . ID=CGI_10003310; scaffold39368 TRF Tandem_Repeat 33626 33693 118 + . . scaffold39368 GLEAN mRNA 39784 39984 0.996296 + . ID=CGI_10003310; scaffold39368 TRF Tandem_Repeat 39784 39984 166 + . . scaffold39368 GLEAN mRNA 48303 48338 0.996296 + . ID=CGI_10003310; scaffold39368 TRF Tandem_Repeat 48303 48338 72 + . . scaffold39368 GLEAN mRNA 51891 52055 0.996296 + . ID=CGI_10003310; scaffold39368 TRF Tandem_Repeat 51891 52055 118 + . . scaffold1690 GLEAN mRNA 18986 19203 0.995929 - . ID=CGI_10003316; scaffold1690 TRF Tandem_Repeat 18986 19203 330 + . . scaffold1690 GLEAN mRNA 33044 33618 0.995929 - . ID=CGI_10003316; scaffold1690 TRF Tandem_Repeat 33044 33618 1141 + . . scaffold1690 GLEAN mRNA 35609 35648 0.995929 - . ID=CGI_10003316; scaffold1690 TRF Tandem_Repeat 35609 35648 80 + . . scaffold1690 GLEAN mRNA 36469 36893 0.995929 - . ID=CGI_10003316; scaffold1690 TRF Tandem_Repeat 36469 36893 365 + . . scaffold1690 GLEAN mRNA 47721 48044 0.995929 - . ID=CGI_10003316; scaffold1690 WUBlastX LINE_L1-Tx1 47721 48044 44 + . . scaffold1690 GLEAN mRNA 47775 48080 0.995929 - . ID=CGI_10003316; scaffold1690 WUBlastX LINE_L1-Tx1 47775 48080 49 + . . scaffold39412 GLEAN mRNA 33629 34458 0.154568 + . ID=CGI_10003318; scaffold39412 TRF Tandem_Repeat 33629 34458 1118 + . . scaffold39412 GLEAN mRNA 33629 34458 0.154568 + . ID=CGI_10003318; scaffold39412 TRF Tandem_Repeat 33629 34458 1139 + . . scaffold39412 GLEAN mRNA 37218 37431 0.154568 + . ID=CGI_10003318; scaffold39412 TRF Tandem_Repeat 37218 37431 268 + . . scaffold39412 GLEAN mRNA 37211 37768 0.154568 + . ID=CGI_10003318; scaffold39412 TRF Tandem_Repeat 37211 37768 644 + . . scaffold39412 GLEAN mRNA 37209 37768 0.154568 + . ID=CGI_10003318; scaffold39412 TRF Tandem_Repeat 37209 37768 666 + . . scaffold39412 GLEAN mRNA 37450 37768 0.154568 + . ID=CGI_10003318; scaffold39412 TRF Tandem_Repeat 37450 37768 475 + . . scaffold39412 GLEAN mRNA 33629 34458 0.801079 - . ID=CGI_10003319; scaffold39412 TRF Tandem_Repeat 33629 34458 1118 + . . scaffold39412 GLEAN mRNA 33629 34458 0.801079 - . ID=CGI_10003319; scaffold39412 TRF Tandem_Repeat 33629 34458 1139 + . . scaffold39412 GLEAN mRNA 37218 37431 0.801079 - . ID=CGI_10003319; scaffold39412 TRF Tandem_Repeat 37218 37431 268 + . . scaffold39412 GLEAN mRNA 37211 37768 0.801079 - . ID=CGI_10003319; scaffold39412 TRF Tandem_Repeat 37211 37768 644 + . . scaffold39412 GLEAN mRNA 37209 37768 0.801079 - . ID=CGI_10003319; scaffold39412 TRF Tandem_Repeat 37209 37768 666 + . . scaffold39412 GLEAN mRNA 37450 37768 0.801079 - . ID=CGI_10003319; scaffold39412 TRF Tandem_Repeat 37450 37768 475 + . . scaffold39412 GLEAN mRNA 47313 47347 0.999949 + . ID=CGI_10003320; scaffold39412 TRF Tandem_Repeat 47313 47347 70 + . . scaffold39412 GLEAN mRNA 47669 47725 0.999949 + . ID=CGI_10003320; scaffold39412 TRF Tandem_Repeat 47669 47725 105 + . . scaffold39412 GLEAN mRNA 58426 59409 0.474518 + . ID=CGI_10003321; scaffold39412 TRF Tandem_Repeat 58426 59409 1159 + . . scaffold39412 GLEAN mRNA 58430 59409 0.474518 + . ID=CGI_10003321; scaffold39412 TRF Tandem_Repeat 58430 59409 1167 + . . scaffold39412 GLEAN mRNA 65992 66037 0.999629 + . ID=CGI_10003322; scaffold39412 TRF Tandem_Repeat 65992 66037 67 + . . scaffold39320 GLEAN mRNA 55501 55594 0.999676 - . ID=CGI_10003324; scaffold39320 TRF Tandem_Repeat 55501 55594 60 + . . scaffold39320 GLEAN mRNA 58530 58801 0.999676 - . ID=CGI_10003324; scaffold39320 TRF Tandem_Repeat 58530 58801 368 + . . scaffold39320 GLEAN mRNA 64476 64518 0.999676 - . ID=CGI_10003324; scaffold39320 TRF Tandem_Repeat 64476 64518 86 + . . scaffold39358 GLEAN mRNA 37602 37955 0.716437 + . ID=CGI_10003326; scaffold39358 WUBlastX DNA_IS4EU 37602 37955 35 + . . scaffold39358 GLEAN mRNA 37946 38419 0.716437 + . ID=CGI_10003326; scaffold39358 WUBlastX DNA_IS4EU 37946 38419 268 + . . scaffold39358 GLEAN mRNA 37704 37958 0.716437 + . ID=CGI_10003326; scaffold39358 WUBlastX DNA_IS4EU 37704 37958 64 + . . scaffold39380 GLEAN mRNA 39175 39994 0.230851 - . ID=CGI_10003328; scaffold39380 TRF Tandem_Repeat 39175 39994 1173 + . . scaffold39364 GLEAN mRNA 27134 27202 1 - . ID=CGI_10003331; scaffold39364 TRF Tandem_Repeat 27134 27202 120 + . . scaffold39364 GLEAN mRNA 27131 27202 1 - . ID=CGI_10003331; scaffold39364 TRF Tandem_Repeat 27131 27202 90 + . . scaffold39364 GLEAN mRNA 27134 27202 0.999284 + . ID=CGI_10003332; scaffold39364 TRF Tandem_Repeat 27134 27202 120 + . . scaffold39364 GLEAN mRNA 27131 27202 0.999284 + . ID=CGI_10003332; scaffold39364 TRF Tandem_Repeat 27131 27202 90 + . . scaffold39364 GLEAN mRNA 46546 46614 0.999284 + . ID=CGI_10003332; scaffold39364 TRF Tandem_Repeat 46546 46614 106 + . . scaffold39364 GLEAN mRNA 49345 49390 0.999284 + . ID=CGI_10003332; scaffold39364 TRF Tandem_Repeat 49345 49390 85 + . . scaffold39364 GLEAN mRNA 49432 49460 0.999284 + . ID=CGI_10003332; scaffold39364 TRF Tandem_Repeat 49432 49460 51 + . . scaffold39364 GLEAN mRNA 53684 53710 1 - . ID=CGI_10003333; scaffold39364 TRF Tandem_Repeat 53684 53710 54 + . . scaffold680 GLEAN mRNA 35756 35791 0.544852 - . ID=CGI_10003337; scaffold680 TRF Tandem_Repeat 35756 35791 72 + . . scaffold680 GLEAN mRNA 36982 37728 0.544852 - . ID=CGI_10003337; scaffold680 WUBlastX LINE_Penelope 36982 37728 255 + . . scaffold680 GLEAN mRNA 36705 36977 0.544852 - . ID=CGI_10003337; scaffold680 WUBlastX LINE_Penelope 36705 36977 34 + . . scaffold680 GLEAN mRNA 36985 37938 0.544852 - . ID=CGI_10003337; scaffold680 WUBlastX LINE_Penelope 36985 37938 146 + . . scaffold559 GLEAN mRNA 36254 36721 1 + . ID=CGI_10003340; scaffold559 WUBlastX DNA_P 36254 36721 46 + . . scaffold559 GLEAN mRNA 36254 36535 1 + . ID=CGI_10003340; scaffold559 WUBlastX DNA_P 36254 36535 57 + . . scaffold39394 GLEAN mRNA 26223 26256 0.74041 + . ID=CGI_10003357; scaffold39394 TRF Tandem_Repeat 26223 26256 68 + . . scaffold39394 GLEAN mRNA 28300 28677 0.74041 + . ID=CGI_10003357; scaffold39394 WUBlastX DNA_Harbinger 28300 28677 61 + . . scaffold734 GLEAN mRNA 20145 20786 0.477862 - . ID=CGI_10003361; scaffold734 WUBlastX LINE_L2 20145 20786 252 - . . scaffold734 GLEAN mRNA 20076 20975 0.477862 - . ID=CGI_10003361; scaffold734 WUBlastX LINE_L2 20076 20975 28 - . . scaffold734 GLEAN mRNA 20565 20867 0.477862 - . ID=CGI_10003361; scaffold734 WUBlastX LINE_CR1 20565 20867 87 - . . scaffold734 GLEAN mRNA 21284 21394 0.477862 - . ID=CGI_10003361; scaffold734 WUBlastX LINE_L2 21284 21394 21 - . . scaffold734 GLEAN mRNA 33398 33424 0.449006 - . ID=CGI_10003362; scaffold734 TRF Tandem_Repeat 33398 33424 54 + . . scaffold734 GLEAN mRNA 33502 33560 0.449006 - . ID=CGI_10003362; scaffold734 TRF Tandem_Repeat 33502 33560 118 + . . scaffold1506 GLEAN mRNA 6595 6631 0.166358 + . ID=CGI_10003366; scaffold1506 TRF Tandem_Repeat 6595 6631 74 + . . scaffold1506 GLEAN mRNA 44065 44122 1 - . ID=CGI_10003368; scaffold1506 TRF Tandem_Repeat 44065 44122 116 + . . scaffold1506 GLEAN mRNA 44481 44539 1 - . ID=CGI_10003368; scaffold1506 TRF Tandem_Repeat 44481 44539 118 + . . scaffold39524 GLEAN mRNA 7893 8211 1 - . ID=CGI_10003372; scaffold39524 TRF Tandem_Repeat 7893 8211 392 + . . scaffold39524 GLEAN mRNA 8629 8665 1 - . ID=CGI_10003372; scaffold39524 TRF Tandem_Repeat 8629 8665 74 + . . scaffold39470 GLEAN mRNA 21186 22754 0.998788 - . ID=CGI_10003379; scaffold39470 WUBlastX LTR_Ngaro 21186 22754 783 - . . scaffold39470 GLEAN mRNA 23043 24047 0.998788 - . ID=CGI_10003379; scaffold39470 WUBlastX LTR_Ngaro 23043 24047 24 - . . scaffold39470 GLEAN mRNA 21171 22466 0.998788 - . ID=CGI_10003379; scaffold39470 WUBlastX LTR_Ngaro 21171 22466 948 - . . scaffold39470 GLEAN mRNA 20254 21159 0.998788 - . ID=CGI_10003379; scaffold39470 WUBlastX LTR_Ngaro 20254 21159 320 - . . scaffold39470 GLEAN mRNA 44078 44596 0.681651 + . ID=CGI_10003380; scaffold39470 WUBlastX LINE_L2 44078 44596 49 + . . scaffold39470 GLEAN mRNA 47414 47485 0.681651 + . ID=CGI_10003380; scaffold39470 WUBlastX LINE_DRE 47414 47485 23 + . . scaffold39470 GLEAN mRNA 44219 47458 0.681651 + . ID=CGI_10003380; scaffold39470 WUBlastX LINE_CR1 44219 47458 2057 + . . scaffold39470 GLEAN mRNA 68183 68385 0.267827 + . ID=CGI_10003381; scaffold39470 TRF Tandem_Repeat 68183 68385 138 + . . scaffold39464 GLEAN mRNA 19604 19715 0.583906 + . ID=CGI_10003386; scaffold39464 TRF Tandem_Repeat 19604 19715 163 + . . scaffold39464 GLEAN mRNA 39219 39245 0.275021 - . ID=CGI_10003387; scaffold39464 TRF Tandem_Repeat 39219 39245 54 + . . scaffold39464 GLEAN mRNA 47989 48532 0.275021 - . ID=CGI_10003387; scaffold39464 TRF Tandem_Repeat 47989 48532 822 + . . scaffold39464 GLEAN mRNA 37825 38031 0.275021 - . ID=CGI_10003387; scaffold39464 WUBlastX DNA_Sola 37825 38031 101 + . . scaffold39482 GLEAN mRNA 3975 6071 0.374169 - . ID=CGI_10003389; scaffold39482 WUBlastX DNA_Zator 3975 6071 1258 + . . scaffold39482 GLEAN mRNA 6965 7123 0.374169 - . ID=CGI_10003389; scaffold39482 WUBlastX DNA_Zator 6965 7123 93 + . . scaffold39482 GLEAN mRNA 7224 7721 0.374169 - . ID=CGI_10003389; scaffold39482 WUBlastX DNA_Zator 7224 7721 139 + . . scaffold39522 GLEAN mRNA 5626 5687 0.885438 + . ID=CGI_10003390; scaffold39522 TRF Tandem_Repeat 5626 5687 106 + . . scaffold39522 GLEAN mRNA 6327 6379 0.885438 + . ID=CGI_10003390; scaffold39522 TRF Tandem_Repeat 6327 6379 106 + . . scaffold39522 GLEAN mRNA 6555 6607 0.885438 + . ID=CGI_10003390; scaffold39522 TRF Tandem_Repeat 6555 6607 106 + . . scaffold39522 GLEAN mRNA 24461 24884 0.999897 + . ID=CGI_10003391; scaffold39522 TRF Tandem_Repeat 24461 24884 679 + . . scaffold39522 GLEAN mRNA 27773 27829 0.654708 + . ID=CGI_10003392; scaffold39522 TRF Tandem_Repeat 27773 27829 51 + . . scaffold39522 GLEAN mRNA 29024 29078 0.654708 + . ID=CGI_10003392; scaffold39522 TRF Tandem_Repeat 29024 29078 51 + . . scaffold39522 GLEAN mRNA 61636 61838 0.999675 + . ID=CGI_10003396; scaffold39522 TRF Tandem_Repeat 61636 61838 381 + . . scaffold39472 GLEAN mRNA 44323 44362 0.862936 + . ID=CGI_10003397; scaffold39472 TRF Tandem_Repeat 44323 44362 62 + . . scaffold39472 GLEAN mRNA 44319 44364 0.862936 + . ID=CGI_10003397; scaffold39472 TRF Tandem_Repeat 44319 44364 65 + . . scaffold39472 GLEAN mRNA 39921 40076 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 39921 40076 32 + . . scaffold39472 GLEAN mRNA 40113 40397 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 40113 40397 154 + . . scaffold39472 GLEAN mRNA 37385 37957 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 37385 37957 54 + . . scaffold39472 GLEAN mRNA 38040 38555 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 38040 38555 320 + . . scaffold39472 GLEAN mRNA 38525 38902 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 38525 38902 186 + . . scaffold39472 GLEAN mRNA 38899 39846 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 38899 39846 118 + . . scaffold39472 GLEAN mRNA 53097 53133 0.862936 + . ID=CGI_10003397; scaffold39472 TRF Tandem_Repeat 53097 53133 65 + . . scaffold39472 GLEAN mRNA 53097 53136 0.862936 + . ID=CGI_10003397; scaffold39472 TRF Tandem_Repeat 53097 53136 53 + . . scaffold1334 GLEAN mRNA 1784 1825 0.666269 - . ID=CGI_10003403; scaffold1334 TRF Tandem_Repeat 1784 1825 50 + . . scaffold1334 GLEAN mRNA 5120 5173 0.666269 - . ID=CGI_10003403; scaffold1334 TRF Tandem_Repeat 5120 5173 108 + . . scaffold1334 GLEAN mRNA 7590 8843 0.666269 - . ID=CGI_10003403; scaffold1334 WUBlastX LINE_Penelope 7590 8843 437 + . . scaffold1334 GLEAN mRNA 9544 9726 0.666269 - . ID=CGI_10003403; scaffold1334 WUBlastX LINE_Penelope 9544 9726 44 + . . scaffold1334 GLEAN mRNA 9121 9687 0.666269 - . ID=CGI_10003403; scaffold1334 WUBlastX LINE_Penelope 9121 9687 58 + . . scaffold1334 GLEAN mRNA 7620 9077 0.666269 - . ID=CGI_10003403; scaffold1334 WUBlastX LINE_Penelope 7620 9077 231 + . . scaffold1334 GLEAN mRNA 8337 9488 0.666269 - . ID=CGI_10003403; scaffold1334 WUBlastX LINE_Penelope 8337 9488 87 + . . scaffold1334 GLEAN mRNA 12515 12649 0.666269 - . ID=CGI_10003403; scaffold1334 WUBlastX LINE_RTE-X 12515 12649 50 + . . scaffold1334 GLEAN mRNA 12703 12798 0.666269 - . ID=CGI_10003403; scaffold1334 WUBlastX LINE_RTE-X 12703 12798 32 + . . scaffold1334 GLEAN mRNA 19088 19119 0.666269 - . ID=CGI_10003403; scaffold1334 TRF Tandem_Repeat 19088 19119 55 + . . scaffold1334 GLEAN mRNA 20423 20760 0.666269 - . ID=CGI_10003403; scaffold1334 TRF Tandem_Repeat 20423 20760 292 + . . scaffold1334 GLEAN mRNA 20425 20783 0.666269 - . ID=CGI_10003403; scaffold1334 TRF Tandem_Repeat 20425 20783 361 + . . scaffold1334 GLEAN mRNA 20423 20785 0.666269 - . ID=CGI_10003403; scaffold1334 TRF Tandem_Repeat 20423 20785 336 + . . scaffold1334 GLEAN mRNA 23220 23402 0.666269 - . ID=CGI_10003403; scaffold1334 TRF Tandem_Repeat 23220 23402 161 + . . scaffold1334 GLEAN mRNA 23176 23612 0.666269 - . ID=CGI_10003403; scaffold1334 TRF Tandem_Repeat 23176 23612 322 + . . scaffold1334 GLEAN mRNA 23406 23613 0.666269 - . ID=CGI_10003403; scaffold1334 TRF Tandem_Repeat 23406 23613 222 + . . scaffold1839 GLEAN mRNA 3764 4173 0.5 + . ID=CGI_10003405; scaffold1839 TRF Tandem_Repeat 3764 4214 342 + . . scaffold1839 GLEAN mRNA 22014 22156 0.897334 + . ID=CGI_10003408; scaffold1839 TRF Tandem_Repeat 22014 22156 187 + . . scaffold1839 GLEAN mRNA 25447 25605 0.897334 + . ID=CGI_10003408; scaffold1839 TRF Tandem_Repeat 25447 25605 119 + . . scaffold1839 GLEAN mRNA 26163 26842 0.897334 + . ID=CGI_10003408; scaffold1839 TRF Tandem_Repeat 26163 26842 786 + . . scaffold1839 GLEAN mRNA 31628 31738 0.897334 + . ID=CGI_10003408; scaffold1839 TRF Tandem_Repeat 31628 31738 93 + . . scaffold1839 GLEAN mRNA 31917 32183 0.897334 + . ID=CGI_10003408; scaffold1839 TRF Tandem_Repeat 31917 32183 438 + . . scaffold1839 GLEAN mRNA 36580 36788 0.897334 + . ID=CGI_10003408; scaffold1839 TRF Tandem_Repeat 36580 36788 190 + . . scaffold1839 GLEAN mRNA 36990 37027 0.897334 + . ID=CGI_10003408; scaffold1839 TRF Tandem_Repeat 36990 37027 51 + . . scaffold1839 GLEAN mRNA 42913 43227 0.897334 + . ID=CGI_10003408; scaffold1839 TRF Tandem_Repeat 42913 43227 612 + . . scaffold39536 GLEAN mRNA 47471 47541 0.994991 - . ID=CGI_10003410; scaffold39536 TRF Tandem_Repeat 47471 47541 61 + . . scaffold39536 GLEAN mRNA 49385 49461 0.994991 - . ID=CGI_10003410; scaffold39536 TRF Tandem_Repeat 49385 49461 131 + . . scaffold39536 GLEAN mRNA 56059 56094 0.994991 - . ID=CGI_10003410; scaffold39536 TRF Tandem_Repeat 56059 56094 63 + . . scaffold39536 GLEAN mRNA 60216 60259 0.994991 - . ID=CGI_10003410; scaffold39536 TRF Tandem_Repeat 60216 60259 88 + . . scaffold582 GLEAN mRNA 12557 12588 0.99331 - . ID=CGI_10003412; scaffold582 TRF Tandem_Repeat 12557 12588 57 + . . scaffold39580 GLEAN mRNA 5240 5293 0.542392 - . ID=CGI_10003415; scaffold39580 TRF Tandem_Repeat 5240 5293 90 + . . scaffold39580 GLEAN mRNA 6740 6785 0.542392 - . ID=CGI_10003415; scaffold39580 TRF Tandem_Repeat 6740 6785 92 + . . scaffold39580 GLEAN mRNA 11897 11958 0.542392 - . ID=CGI_10003415; scaffold39580 TRF Tandem_Repeat 11897 11958 81 + . . scaffold1374 GLEAN mRNA 61036 61386 0.911813 + . ID=CGI_10003419; scaffold1374 TRF Tandem_Repeat 61036 61386 614 + . . scaffold1374 GLEAN mRNA 62273 63043 0.911813 + . ID=CGI_10003419; scaffold1374 TRF Tandem_Repeat 62273 63043 1114 + . . scaffold265 GLEAN mRNA 22274 22280 0.853024 + . ID=CGI_10003428; scaffold265 WUBlastX LTR_Pao 22274 23017 256 + . . scaffold265 GLEAN mRNA 71751 71792 0.643455 - . ID=CGI_10003429; scaffold265 TRF Tandem_Repeat 71751 71792 84 + . . scaffold265 GLEAN mRNA 68521 69009 0.643455 - . ID=CGI_10003429; scaffold265 WUBlastX LTR_Ngaro 68521 69009 321 - . . scaffold265 GLEAN mRNA 69374 70069 0.643455 - . ID=CGI_10003429; scaffold265 WUBlastX LTR_Ngaro 69374 70069 143 - . . scaffold265 GLEAN mRNA 69374 69778 0.643455 - . ID=CGI_10003429; scaffold265 WUBlastX LTR_Ngaro 69374 69778 151 - . . scaffold265 GLEAN mRNA 68524 69108 0.643455 - . ID=CGI_10003429; scaffold265 WUBlastX LTR_Ngaro 68524 69108 164 - . . scaffold265 GLEAN mRNA 66239 67180 0.643455 - . ID=CGI_10003429; scaffold265 WUBlastX LTR_Ngaro 66239 67180 336 - . . scaffold265 GLEAN mRNA 67147 68214 0.643455 - . ID=CGI_10003429; scaffold265 WUBlastX LTR_Ngaro 67147 68214 648 - . . scaffold39592 GLEAN mRNA 70502 70541 0.999998 - . ID=CGI_10003436; scaffold39592 TRF Tandem_Repeat 70502 70541 53 + . . scaffold39592 GLEAN mRNA 72281 72309 0.999998 - . ID=CGI_10003436; scaffold39592 TRF Tandem_Repeat 72281 72309 58 + . . scaffold39592 GLEAN mRNA 72309 72351 0.999998 - . ID=CGI_10003436; scaffold39592 TRF Tandem_Repeat 72309 72351 86 + . . scaffold1276 GLEAN mRNA 28988 29221 0.398616 - . ID=CGI_10003438; scaffold1276 WUBlastX LINE_RTE-BovB 28988 29221 78 + . . scaffold1276 GLEAN mRNA 36161 36191 0.398616 - . ID=CGI_10003438; scaffold1276 TRF Tandem_Repeat 36161 36191 62 + . . scaffold1276 GLEAN mRNA 39273 39972 0.398616 - . ID=CGI_10003438; scaffold1276 TRF Tandem_Repeat 39273 39972 1014 + . . scaffold1276 GLEAN mRNA 55341 55396 0.972711 - . ID=CGI_10003440; scaffold1276 TRF Tandem_Repeat 55341 55396 112 + . . scaffold1276 GLEAN mRNA 70641 70680 0.896952 - . ID=CGI_10003441; scaffold1276 TRF Tandem_Repeat 70641 70680 80 + . . scaffold39572 GLEAN mRNA 63095 63211 0.785898 - . ID=CGI_10003446; scaffold39572 WUBlastX LINE_RTE-X 63095 63211 32 + . . scaffold39572 GLEAN mRNA 63089 63334 0.785898 - . ID=CGI_10003446; scaffold39572 WUBlastX LINE_RTE-X 63089 63334 28 + . . scaffold39582 GLEAN mRNA 5113 5350 0.999985 + . ID=CGI_10003448; scaffold39582 TRF Tandem_Repeat 5113 5350 194 + . . scaffold39582 GLEAN mRNA 16644 16838 0.999985 + . ID=CGI_10003448; scaffold39582 TRF Tandem_Repeat 16644 16838 238 + . . scaffold39582 GLEAN mRNA 16746 16890 0.999985 + . ID=CGI_10003448; scaffold39582 TRF Tandem_Repeat 16746 16890 200 + . . scaffold39582 GLEAN mRNA 16823 16887 0.999985 + . ID=CGI_10003448; scaffold39582 TRF Tandem_Repeat 16823 16887 70 + . . scaffold39582 GLEAN mRNA 17214 17555 0.999985 + . ID=CGI_10003448; scaffold39582 TRF Tandem_Repeat 17214 17555 347 + . . scaffold39582 GLEAN mRNA 17214 17599 0.999985 + . ID=CGI_10003448; scaffold39582 TRF Tandem_Repeat 17214 17599 336 + . . scaffold39582 GLEAN mRNA 17237 17600 0.999985 + . ID=CGI_10003448; scaffold39582 TRF Tandem_Repeat 17237 17600 364 + . . scaffold39582 GLEAN mRNA 17216 17600 0.999985 + . ID=CGI_10003448; scaffold39582 TRF Tandem_Repeat 17216 17600 271 + . . scaffold39582 GLEAN mRNA 18633 20592 0.999985 + . ID=CGI_10003448; scaffold39582 TRF Tandem_Repeat 18633 20592 1999 + . . scaffold766 GLEAN mRNA 2219 2339 0.965005 + . ID=CGI_10003454; scaffold766 TRF Tandem_Repeat 2219 2339 138 + . . scaffold766 GLEAN mRNA 3609 4145 0.965005 + . ID=CGI_10003454; scaffold766 TRF Tandem_Repeat 3609 4145 194 + . . scaffold766 GLEAN mRNA 10404 10464 0.965005 + . ID=CGI_10003454; scaffold766 TRF Tandem_Repeat 10404 10464 108 + . . scaffold766 GLEAN mRNA 30383 30414 0.789183 + . ID=CGI_10003455; scaffold766 TRF Tandem_Repeat 30383 30414 64 + . . scaffold766 GLEAN mRNA 30803 30957 0.789183 + . ID=CGI_10003455; scaffold766 TRF Tandem_Repeat 30803 30957 122 + . . scaffold766 GLEAN mRNA 30830 30944 0.789183 + . ID=CGI_10003455; scaffold766 TRF Tandem_Repeat 30830 30944 106 + . . scaffold766 GLEAN mRNA 30833 30915 0.789183 + . ID=CGI_10003455; scaffold766 TRF Tandem_Repeat 30833 30915 76 + . . scaffold766 GLEAN mRNA 32379 32485 0.789183 + . ID=CGI_10003455; scaffold766 TRF Tandem_Repeat 32379 32485 115 + . . scaffold766 GLEAN mRNA 38031 38474 1 + . ID=CGI_10003456; scaffold766 WUBlastX LINE_I-Nimb 38031 38474 46 + . . scaffold1847 GLEAN mRNA 14529 14584 0.999289 - . ID=CGI_10003457; scaffold1847 TRF Tandem_Repeat 14529 14584 112 + . . scaffold1847 GLEAN mRNA 14584 14627 0.999289 - . ID=CGI_10003457; scaffold1847 TRF Tandem_Repeat 14584 14627 79 + . . scaffold264 GLEAN mRNA 63882 64430 0.919425 + . ID=CGI_10003463; scaffold264 WUBlastX LTR_Gypsy-Cigr 63882 64430 303 + . . scaffold264 GLEAN mRNA 63714 64409 0.919425 + . ID=CGI_10003463; scaffold264 WUBlastX LTR_Gypsy 63714 64409 225 + . . scaffold264 GLEAN mRNA 63160 63261 0.919425 + . ID=CGI_10003463; scaffold264 WUBlastX LTR_Gypsy 63160 63261 23 + . . scaffold264 GLEAN mRNA 63606 64226 0.919425 + . ID=CGI_10003463; scaffold264 WUBlastX LTR_ERV1 63606 64226 74 + . . scaffold39600 GLEAN mRNA 9126 9168 0.999942 - . ID=CGI_10003464; scaffold39600 TRF Tandem_Repeat 9126 9168 77 + . . scaffold39600 GLEAN mRNA 9974 10037 0.999942 - . ID=CGI_10003464; scaffold39600 TRF Tandem_Repeat 9974 10037 110 + . . scaffold39600 GLEAN mRNA 12706 12744 0.999942 - . ID=CGI_10003464; scaffold39600 TRF Tandem_Repeat 12706 12744 78 + . . scaffold39600 GLEAN mRNA 64889 64932 0.593089 - . ID=CGI_10003465; scaffold39600 TRF Tandem_Repeat 64889 64932 88 + . . scaffold39600 GLEAN mRNA 65276 65326 0.593089 - . ID=CGI_10003465; scaffold39600 TRF Tandem_Repeat 65276 65326 102 + . . scaffold39600 GLEAN mRNA 68705 69054 0.593089 - . ID=CGI_10003465; scaffold39600 TRF Tandem_Repeat 68705 69054 613 + . . scaffold1128 GLEAN mRNA 10283 10349 0.85661 + . ID=CGI_10003475; scaffold1128 TRF Tandem_Repeat 10283 10349 134 + . . scaffold1543 GLEAN mRNA 13323 13577 0.784835 - . ID=CGI_10003480; scaffold1543 TRF Tandem_Repeat 13323 13577 413 + . . scaffold1543 GLEAN mRNA 70787 70928 0.883594 + . ID=CGI_10003485; scaffold1543 TRF Tandem_Repeat 70787 70928 193 + . . scaffold1543 GLEAN mRNA 71790 71869 0.883594 + . ID=CGI_10003485; scaffold1543 TRF Tandem_Repeat 71790 71869 142 + . . scaffold253 GLEAN mRNA 3342 3881 0.999351 + . ID=CGI_10003487; scaffold253 WUBlastX LTR_Gypsy 3342 3881 91 - . . scaffold253 GLEAN mRNA 2582 2698 0.999351 + . ID=CGI_10003487; scaffold253 WUBlastX LTR_Gypsy 2582 2698 20 - . . scaffold253 GLEAN mRNA 2602 2844 0.999351 + . ID=CGI_10003487; scaffold253 WUBlastX LTR_Gypsy 2602 2844 71 - . . scaffold253 GLEAN mRNA 2653 3465 0.999351 + . ID=CGI_10003487; scaffold253 WUBlastX LTR_Gypsy 2653 3465 118 - . . scaffold253 GLEAN mRNA 9308 9682 0.999351 + . ID=CGI_10003487; scaffold253 WUBlastX LINE_L2 9308 9682 97 - . . scaffold253 GLEAN mRNA 3489 3971 0.999351 + . ID=CGI_10003487; scaffold253 WUBlastX LTR_Gypsy 3489 3971 20 - . . scaffold1124 GLEAN mRNA 49797 49842 0.992451 - . ID=CGI_10003491; scaffold1124 TRF Tandem_Repeat 49797 49842 92 + . . scaffold39642 GLEAN mRNA 1360 1590 0.776637 + . ID=CGI_10003493; scaffold39642 WUBlastX LTR_Gypsy 1360 1590 23 + . . scaffold39642 GLEAN mRNA 13247 13741 0.634289 + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 13247 13741 114 - . . scaffold39642 GLEAN mRNA 12930 13112 0.634289 + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 12732 13112 64 - . . scaffold39642 GLEAN mRNA 13146 13319 0.634289 + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 13146 13319 106 - . . scaffold39642 GLEAN mRNA 13403 13714 0.634289 + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 13403 13714 144 - . . scaffold39642 GLEAN mRNA 13717 14328 0.634289 + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 13717 14328 88 - . . scaffold39642 GLEAN mRNA 14386 15114 0.634289 + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 14386 15114 26 - . . scaffold39640 GLEAN mRNA 51245 51808 0.557203 - . ID=CGI_10003501; scaffold39640 WUBlastX DNA_IS4EU 51245 51808 348 - . . scaffold39640 GLEAN mRNA 51093 51254 0.557203 - . ID=CGI_10003501; scaffold39640 WUBlastX DNA_IS4EU 51093 51254 100 - . . scaffold39652 GLEAN mRNA 64383 64450 0.999372 - . ID=CGI_10003506; scaffold39652 WUBlastX LINE_L2 63866 64450 27 - . . scaffold1473 GLEAN mRNA 15282 15560 0.99911 + . ID=CGI_10003509; scaffold1473 WUBlastX LINE_L1-Tx1 15282 15560 71 - . . scaffold1473 GLEAN mRNA 15348 15608 0.99911 + . ID=CGI_10003509; scaffold1473 WUBlastX LINE_L1 15348 15608 58 - . . scaffold1473 GLEAN mRNA 18337 18434 0.99911 + . ID=CGI_10003509; scaffold1473 TRF Tandem_Repeat 18337 18434 169 + . . scaffold1473 GLEAN mRNA 18659 19012 0.99911 + . ID=CGI_10003509; scaffold1473 WUBlastX LINE_L2 18659 19012 61 - . . scaffold1473 GLEAN mRNA 18973 19476 0.99911 + . ID=CGI_10003509; scaffold1473 WUBlastX LINE_L2 18973 19476 26 - . . scaffold1473 GLEAN mRNA 17173 17445 0.99911 + . ID=CGI_10003509; scaffold1473 WUBlastX LINE_L2 17173 17445 81 - . . scaffold1473 GLEAN mRNA 17176 17586 0.99911 + . ID=CGI_10003509; scaffold1473 WUBlastX LINE_L2 17176 17586 37 - . . scaffold1473 GLEAN mRNA 18668 18952 0.99911 + . ID=CGI_10003509; scaffold1473 WUBlastX LINE_L2 18668 18952 90 - . . scaffold1473 GLEAN mRNA 17173 17502 0.99911 + . ID=CGI_10003509; scaffold1473 WUBlastX LINE_L2 17173 17502 68 - . . scaffold1473 GLEAN mRNA 19105 19857 0.99911 + . ID=CGI_10003509; scaffold1473 WUBlastX LINE_L2 19105 19857 127 - . . scaffold1473 GLEAN mRNA 33582 33664 0.99911 + . ID=CGI_10003509; scaffold1473 TRF Tandem_Repeat 33582 33664 166 + . . scaffold1182 GLEAN mRNA 20793 20833 0.356892 - . ID=CGI_10003511; scaffold1182 TRF Tandem_Repeat 20793 20833 82 + . . scaffold1182 GLEAN mRNA 32673 32687 0.934044 + . ID=CGI_10003512; scaffold1182 TRF Tandem_Repeat 32673 32835 212 + . . scaffold1182 GLEAN mRNA 56118 56152 0.957451 - . ID=CGI_10003513; scaffold1182 TRF Tandem_Repeat 56118 56152 56 + . . scaffold1182 GLEAN mRNA 59678 59839 0.957451 - . ID=CGI_10003513; scaffold1182 TRF Tandem_Repeat 59678 59839 54 + . . scaffold1182 GLEAN mRNA 59701 59865 0.957451 - . ID=CGI_10003513; scaffold1182 TRF Tandem_Repeat 59701 59865 87 + . . scaffold39720 GLEAN mRNA 20610 20662 0.634579 + . ID=CGI_10003514; scaffold39720 TRF Tandem_Repeat 20610 20662 97 + . . scaffold39696 GLEAN mRNA 34137 34993 1 + . ID=CGI_10003523; scaffold39696 TRF Tandem_Repeat 34137 34993 1129 + . . scaffold39696 GLEAN mRNA 32669 33475 1 + . ID=CGI_10003523; scaffold39696 TRF Tandem_Repeat 32669 33475 1181 + . . scaffold39696 GLEAN mRNA 44723 44962 0.990766 + . ID=CGI_10003524; scaffold39696 WUBlastX DNA_TcMar-Fot1 44723 44962 24 - . . scaffold39696 GLEAN mRNA 57821 58492 0.990766 + . ID=CGI_10003524; scaffold39696 TRF Tandem_Repeat 57821 58492 702 + . . scaffold39696 GLEAN mRNA 56512 56622 0.990766 + . ID=CGI_10003524; scaffold39696 WUBlastX DNA_Harbinger 56512 56622 34 + . . scaffold292 GLEAN mRNA 8573 8698 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX DNA_hAT-Ac 8573 8698 75 + . . scaffold292 GLEAN mRNA 7438 8094 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX LINE_L1-Tx1 7438 8094 121 + . . scaffold292 GLEAN mRNA 7432 7944 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX LINE_L1-Tx1 7432 7944 241 + . . scaffold292 GLEAN mRNA 5899 7074 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX LINE_L1-Tx1 5899 7074 316 + . . scaffold292 GLEAN mRNA 7052 7435 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX LINE_L1-Tx1 7052 7435 135 + . . scaffold292 GLEAN mRNA 5287 5391 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX LINE_Jockey 4666 5391 28 + . . scaffold292 GLEAN mRNA 7166 7435 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX LINE_L1 7166 7435 145 + . . scaffold292 GLEAN mRNA 8050 8169 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX LINE_R1 8050 8169 25 + . . scaffold292 GLEAN mRNA 23605 23844 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX DNA_Harbinger 23605 23844 22 + . . scaffold292 GLEAN mRNA 17968 18999 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX LTR_Pao 17968 18999 370 - . . scaffold292 GLEAN mRNA 18211 19020 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX LTR_Pao 18211 19020 697 - . . scaffold292 GLEAN mRNA 34382 35112 0.999144 + . ID=CGI_10003527; scaffold292 TRF Tandem_Repeat 34382 35112 534 + . . scaffold292 GLEAN mRNA 37904 38086 0.999144 + . ID=CGI_10003527; scaffold292 WUBlastX DNA_TcMar-Marin 37904 38086 28 + . . scaffold292 GLEAN mRNA 37402 37758 0.999144 + . ID=CGI_10003527; scaffold292 WUBlastX DNA_TcMar-Marin 37402 37758 171 + . . scaffold292 GLEAN mRNA 37091 37468 0.999144 + . ID=CGI_10003527; scaffold292 WUBlastX DNA_TcMar-Marin 37091 37468 140 + . . scaffold292 GLEAN mRNA 38110 38349 0.999144 + . ID=CGI_10003527; scaffold292 WUBlastX DNA_TcMar-Marin 38110 38349 166 + . . scaffold292 GLEAN mRNA 38059 38349 0.999144 + . ID=CGI_10003527; scaffold292 WUBlastX DNA_TcMar-Marin 38059 38349 116 + . . scaffold292 GLEAN mRNA 37940 38083 0.999144 + . ID=CGI_10003527; scaffold292 WUBlastX DNA_TcMar-Marin 37940 38083 63 + . . scaffold292 GLEAN mRNA 37462 37749 0.999144 + . ID=CGI_10003527; scaffold292 WUBlastX DNA_TcMar-Marin 37462 37749 191 + . . scaffold292 GLEAN mRNA 55425 55521 0.660019 + . ID=CGI_10003529; scaffold292 TRF Tandem_Repeat 55425 55521 85 + . . scaffold292 GLEAN mRNA 55474 55648 0.660019 + . ID=CGI_10003529; scaffold292 TRF Tandem_Repeat 55474 55648 115 + . . scaffold292 GLEAN mRNA 53781 54752 0.660019 + . ID=CGI_10003529; scaffold292 WUBlastX DNA_TcMar-Tc1 53781 54752 386 + . . scaffold292 GLEAN mRNA 54417 54845 0.660019 + . ID=CGI_10003529; scaffold292 WUBlastX DNA_TcMar-Stowa 54417 54845 34 + . . scaffold292 GLEAN mRNA 65904 65983 0.660019 + . ID=CGI_10003529; scaffold292 TRF Tandem_Repeat 65904 65983 151 + . . scaffold39758 GLEAN mRNA 22237 22599 0.741708 + . ID=CGI_10003537; scaffold39758 WUBlastX DNA_Kolobok 22237 22599 122 + . . scaffold39758 GLEAN mRNA 28249 29466 0.94461 + . ID=CGI_10003538; scaffold39758 TRF Tandem_Repeat 28249 29466 1408 + . . scaffold39758 GLEAN mRNA 35417 35458 0.94461 + . ID=CGI_10003538; scaffold39758 TRF Tandem_Repeat 35417 35458 50 + . . scaffold39758 GLEAN mRNA 54928 54985 1 + . ID=CGI_10003539; scaffold39758 TRF Tandem_Repeat 54928 54985 53 + . . scaffold39758 GLEAN mRNA 55543 55776 1 + . ID=CGI_10003539; scaffold39758 TRF Tandem_Repeat 55543 55776 336 + . . scaffold39758 GLEAN mRNA 61591 61929 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 61591 61929 103 - . . scaffold39758 GLEAN mRNA 61564 61815 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 61564 61815 174 - . . scaffold39758 GLEAN mRNA 61893 62288 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 61893 62288 136 - . . scaffold39758 GLEAN mRNA 59680 60216 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 59680 60216 89 - . . scaffold39758 GLEAN mRNA 62980 63174 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 62980 63174 31 - . . scaffold39758 GLEAN mRNA 59772 60683 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 59772 60683 303 - . . scaffold39758 GLEAN mRNA 62305 62484 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 62305 62484 131 - . . scaffold39758 GLEAN mRNA 62484 62645 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 62484 62645 103 - . . scaffold39758 GLEAN mRNA 62903 63028 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 62903 63028 29 - . . scaffold39758 GLEAN mRNA 63046 63252 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 63046 63252 37 - . . scaffold39758 GLEAN mRNA 60507 60746 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 60507 60746 81 - . . scaffold39758 GLEAN mRNA 63049 63354 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 63049 63354 36 - . . scaffold39758 GLEAN mRNA 63049 63201 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-BovB 63049 63201 71 - . . scaffold39758 GLEAN mRNA 62211 62309 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_CR1 62211 62309 24 - . . scaffold39758 GLEAN mRNA 60507 60794 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_L1 60507 60794 29 - . . scaffold39758 GLEAN mRNA 61393 61785 1 + . ID=CGI_10003539; scaffold39758 WUBlastX LINE_RTE-X 61393 61785 40 - . . scaffold1470 GLEAN mRNA 3477 3802 1 - . ID=CGI_10003541; scaffold1470 TRF Tandem_Repeat 3477 3802 471 + . . scaffold1470 GLEAN mRNA 3477 3802 1 - . ID=CGI_10003541; scaffold1470 TRF Tandem_Repeat 3477 3802 481 + . . scaffold907 GLEAN mRNA 12758 12862 0.44891 + . ID=CGI_10003557; scaffold907 WUBlastX LTR_Pao 12758 12862 22 + . . scaffold39724 GLEAN mRNA 11867 11902 0.859839 + . ID=CGI_10003578; scaffold39724 TRF Tandem_Repeat 11867 11902 72 + . . scaffold39724 GLEAN mRNA 17836 17887 0.859839 + . ID=CGI_10003578; scaffold39724 TRF Tandem_Repeat 17836 17887 104 + . . scaffold39724 GLEAN mRNA 26678 27074 0.859839 + . ID=CGI_10003578; scaffold39724 TRF Tandem_Repeat 26678 27074 569 + . . scaffold39724 GLEAN mRNA 27082 27439 0.859839 + . ID=CGI_10003578; scaffold39724 TRF Tandem_Repeat 27082 27439 431 + . . scaffold39724 GLEAN mRNA 27105 27498 0.859839 + . ID=CGI_10003578; scaffold39724 TRF Tandem_Repeat 27105 27498 286 + . . scaffold39724 GLEAN mRNA 27082 27498 0.859839 + . ID=CGI_10003578; scaffold39724 TRF Tandem_Repeat 27082 27498 428 + . . scaffold39724 GLEAN mRNA 27191 27492 0.859839 + . ID=CGI_10003578; scaffold39724 TRF Tandem_Repeat 27191 27492 253 + . . scaffold39724 GLEAN mRNA 30617 30817 0.859839 + . ID=CGI_10003578; scaffold39724 TRF Tandem_Repeat 30617 30817 101 + . . scaffold39724 GLEAN mRNA 30599 30854 0.859839 + . ID=CGI_10003578; scaffold39724 TRF Tandem_Repeat 30599 30854 307 + . . scaffold39724 GLEAN mRNA 28094 28858 0.859839 + . ID=CGI_10003578; scaffold39724 WUBlastX RC_Helitron 28094 28858 216 + . . scaffold39724 GLEAN mRNA 28931 30577 0.859839 + . ID=CGI_10003578; scaffold39724 WUBlastX RC_Helitron 28931 30577 496 + . . scaffold39724 GLEAN mRNA 27755 28681 0.859839 + . ID=CGI_10003578; scaffold39724 WUBlastX RC_Helitron 27755 28681 271 + . . scaffold39724 GLEAN mRNA 36867 36911 0.859839 + . ID=CGI_10003578; scaffold39724 TRF Tandem_Repeat 36867 36911 83 + . . scaffold39724 GLEAN mRNA 30866 36187 0.859839 + . ID=CGI_10003578; scaffold39724 WUBlastX RC_Helitron 30866 36187 3161 + . . scaffold39724 GLEAN mRNA 62314 62368 0.987675 + . ID=CGI_10003581; scaffold39724 TRF Tandem_Repeat 62314 62368 65 + . . scaffold39724 GLEAN mRNA 62310 62365 0.987675 + . ID=CGI_10003581; scaffold39724 TRF Tandem_Repeat 62310 62365 71 + . . scaffold39724 GLEAN mRNA 65508 65573 0.987675 + . ID=CGI_10003581; scaffold39724 TRF Tandem_Repeat 65508 65573 114 + . . scaffold1442 GLEAN mRNA 19599 19874 0.987275 - . ID=CGI_10003583; scaffold1442 WUBlastX LINE_L1-Tx1 19599 19874 50 - . . scaffold1442 GLEAN mRNA 19897 20304 0.987275 - . ID=CGI_10003583; scaffold1442 WUBlastX LINE_L1-Tx1 19897 20304 101 - . . scaffold1442 GLEAN mRNA 19566 19772 0.987275 - . ID=CGI_10003583; scaffold1442 WUBlastX LINE_L1-Tx1 19566 19772 34 - . . scaffold1442 GLEAN mRNA 19847 19954 0.987275 - . ID=CGI_10003583; scaffold1442 WUBlastX LINE_L1 19847 19954 22 - . . scaffold1442 GLEAN mRNA 19608 19829 0.987275 - . ID=CGI_10003583; scaffold1442 WUBlastX LINE_L1-Tx1 19608 19829 74 - . . scaffold1442 GLEAN mRNA 29720 30692 1 - . ID=CGI_10003584; scaffold1442 TRF Tandem_Repeat 29720 30692 1148 + . . scaffold1442 GLEAN mRNA 35605 35652 1 - . ID=CGI_10003584; scaffold1442 TRF Tandem_Repeat 35605 35652 87 + . . scaffold1442 GLEAN mRNA 35767 36588 1 - . ID=CGI_10003584; scaffold1442 WUBlastX LINE_L1-Tx1 35767 36588 84 - . . scaffold1442 GLEAN mRNA 36602 38143 1 - . ID=CGI_10003584; scaffold1442 WUBlastX LINE_L1-Tx1 36602 38143 928 - . . scaffold1442 GLEAN mRNA 38142 38627 1 - . ID=CGI_10003584; scaffold1442 WUBlastX LINE_L1-Tx1 38142 38627 293 - . . scaffold1442 GLEAN mRNA 38562 38698 1 - . ID=CGI_10003584; scaffold1442 WUBlastX LINE_CR1 38562 38723 32 - . . scaffold1442 GLEAN mRNA 58284 58499 1 - . ID=CGI_10003586; scaffold1442 WUBlastX DNA_MuDR 58284 58499 91 - . . scaffold1442 GLEAN mRNA 72882 72918 0.853071 + . ID=CGI_10003587; scaffold1442 WUBlastX DNA_En-Spm 72694 72918 31 - . . scaffold1442 GLEAN mRNA 74907 75128 0.853071 + . ID=CGI_10003587; scaffold1442 WUBlastX LTR_ERV1 74907 75128 24 + . . scaffold39730 GLEAN mRNA 4039 4072 0.191255 - . ID=CGI_10003588; scaffold39730 TRF Tandem_Repeat 4039 4072 68 + . . scaffold39730 GLEAN mRNA 10519 10575 0.191255 - . ID=CGI_10003588; scaffold39730 TRF Tandem_Repeat 10519 10575 114 + . . scaffold39730 GLEAN mRNA 10647 10691 0.191255 - . ID=CGI_10003588; scaffold39730 TRF Tandem_Repeat 10647 10691 90 + . . scaffold39730 GLEAN mRNA 18901 18945 0.191255 - . ID=CGI_10003588; scaffold39730 TRF Tandem_Repeat 18901 18945 81 + . . scaffold39730 GLEAN mRNA 16544 16909 0.191255 - . ID=CGI_10003588; scaffold39730 WUBlastX DNA_TcMar-Marin 16544 16909 68 + . . scaffold39730 GLEAN mRNA 17258 17419 0.191255 - . ID=CGI_10003588; scaffold39730 WUBlastX DNA_TcMar-Marin 17258 17419 48 + . . scaffold39730 GLEAN mRNA 16649 16900 0.191255 - . ID=CGI_10003588; scaffold39730 WUBlastX DNA_TcMar-Marin 16649 16900 90 + . . scaffold39730 GLEAN mRNA 18901 18945 0.999947 + . ID=CGI_10003589; scaffold39730 TRF Tandem_Repeat 18901 18945 81 + . . scaffold39730 GLEAN mRNA 16544 16909 0.999947 + . ID=CGI_10003589; scaffold39730 WUBlastX DNA_TcMar-Marin 16544 16909 68 + . . scaffold39730 GLEAN mRNA 17258 17419 0.999947 + . ID=CGI_10003589; scaffold39730 WUBlastX DNA_TcMar-Marin 17258 17419 48 + . . scaffold39730 GLEAN mRNA 16649 16900 0.999947 + . ID=CGI_10003589; scaffold39730 WUBlastX DNA_TcMar-Marin 16649 16900 90 + . . scaffold39730 GLEAN mRNA 41369 42292 0.591726 + . ID=CGI_10003591; scaffold39730 TRF Tandem_Repeat 41369 42292 1201 + . . scaffold39730 GLEAN mRNA 43244 43346 0.591726 + . ID=CGI_10003591; scaffold39730 TRF Tandem_Repeat 43244 43346 89 + . . scaffold39712 GLEAN mRNA 31656 31710 0.558395 - . ID=CGI_10003594; scaffold39712 TRF Tandem_Repeat 31656 31710 110 + . . scaffold39754 GLEAN mRNA 12544 12799 0.584385 + . ID=CGI_10003598; scaffold39754 TRF Tandem_Repeat 12544 12799 224 + . . scaffold39754 GLEAN mRNA 12574 12799 0.584385 + . ID=CGI_10003598; scaffold39754 TRF Tandem_Repeat 12574 12799 267 + . . scaffold39754 GLEAN mRNA 14096 14778 0.584385 + . ID=CGI_10003598; scaffold39754 TRF Tandem_Repeat 14096 14778 1096 + . . scaffold39754 GLEAN mRNA 12858 14069 0.584385 + . ID=CGI_10003598; scaffold39754 WUBlastX LTR_Pao 12858 14069 700 + . . scaffold39754 GLEAN mRNA 12162 12515 0.584385 + . ID=CGI_10003598; scaffold39754 WUBlastX LTR_Pao 12162 12515 54 + . . scaffold39754 GLEAN mRNA 69917 69950 0.886685 + . ID=CGI_10003600; scaffold39754 TRF Tandem_Repeat 69917 69950 68 + . . scaffold39744 GLEAN mRNA 12264 12584 0.991719 - . ID=CGI_10003601; scaffold39744 TRF Tandem_Repeat 12264 12584 498 + . . scaffold39744 GLEAN mRNA 36257 37038 1 + . ID=CGI_10003603; scaffold39744 TRF Tandem_Repeat 36257 37038 618 + . . scaffold39744 GLEAN mRNA 36199 37020 1 + . ID=CGI_10003603; scaffold39744 TRF Tandem_Repeat 36199 37020 932 + . . scaffold39744 GLEAN mRNA 40137 40180 1 + . ID=CGI_10003603; scaffold39744 TRF Tandem_Repeat 40137 40180 79 + . . scaffold39744 GLEAN mRNA 40292 41039 1 + . ID=CGI_10003603; scaffold39744 TRF Tandem_Repeat 40292 41039 1013 + . . scaffold39744 GLEAN mRNA 53585 54574 0.997818 - . ID=CGI_10003604; scaffold39744 TRF Tandem_Repeat 53585 54574 928 + . . scaffold39744 GLEAN mRNA 63043 63284 0.999177 + . ID=CGI_10003605; scaffold39744 TRF Tandem_Repeat 63043 63284 308 + . . scaffold39744 GLEAN mRNA 64885 65083 0.999177 + . ID=CGI_10003605; scaffold39744 TRF Tandem_Repeat 64885 65083 291 + . . scaffold39744 GLEAN mRNA 76284 76404 0.999177 + . ID=CGI_10003605; scaffold39744 TRF Tandem_Repeat 76284 76404 134 + . . scaffold39778 GLEAN mRNA 37087 37365 0.521329 + . ID=CGI_10003608; scaffold39778 TRF Tandem_Repeat 37087 37365 444 + . . scaffold39778 GLEAN mRNA 42275 42427 0.521329 + . ID=CGI_10003608; scaffold39778 TRF Tandem_Repeat 42275 42427 105 + . . scaffold39778 GLEAN mRNA 43460 43759 0.521329 + . ID=CGI_10003608; scaffold39778 WUBlastX LINE_RTE-X 43460 43759 70 + . . scaffold39778 GLEAN mRNA 43475 43642 0.521329 + . ID=CGI_10003608; scaffold39778 WUBlastX LINE_RTE-X 43475 43642 88 + . . scaffold39778 GLEAN mRNA 42561 43463 0.521329 + . ID=CGI_10003608; scaffold39778 WUBlastX LINE_RTE-X 42561 43463 451 + . . scaffold39778 GLEAN mRNA 60178 60357 0.806384 - . ID=CGI_10003612; scaffold39778 TRF Tandem_Repeat 60178 60357 360 + . . scaffold39778 GLEAN mRNA 63912 63956 0.806384 - . ID=CGI_10003612; scaffold39778 TRF Tandem_Repeat 63912 63956 90 + . . scaffold39778 GLEAN mRNA 64638 65054 0.806384 - . ID=CGI_10003612; scaffold39778 TRF Tandem_Repeat 64638 65054 422 + . . scaffold39778 GLEAN mRNA 62794 63021 0.806384 - . ID=CGI_10003612; scaffold39778 WUBlastX LINE_RTE-X 62794 63021 69 - . . scaffold39778 GLEAN mRNA 62638 62955 0.806384 - . ID=CGI_10003612; scaffold39778 WUBlastX LINE_RTE-X 62638 62955 73 - . . scaffold39778 GLEAN mRNA 66878 66935 0.806384 - . ID=CGI_10003612; scaffold39778 TRF Tandem_Repeat 66878 66935 116 + . . scaffold39778 GLEAN mRNA 72746 72784 1 - . ID=CGI_10003613; scaffold39778 TRF Tandem_Repeat 72746 72784 78 + . . scaffold224 GLEAN mRNA 15080 15126 0.726091 - . ID=CGI_10003614; scaffold224 TRF Tandem_Repeat 15080 15126 94 + . . scaffold224 GLEAN mRNA 53274 53648 0.99912 - . ID=CGI_10003616; scaffold224 WUBlastX DNA_TcMar-Tc1 53274 53648 211 - . . scaffold224 GLEAN mRNA 53274 53753 0.99912 - . ID=CGI_10003616; scaffold224 WUBlastX DNA_TcMar-Tc1 53274 53753 119 - . . scaffold224 GLEAN mRNA 53068 53259 0.99912 - . ID=CGI_10003616; scaffold224 WUBlastX DNA_TcMar-Tc1 53068 53259 124 - . . scaffold224 GLEAN mRNA 53642 54097 0.99912 - . ID=CGI_10003616; scaffold224 WUBlastX DNA_TcMar-Tc1 53642 54097 91 - . . scaffold224 GLEAN mRNA 49059 49298 0.99912 - . ID=CGI_10003616; scaffold224 TRF Tandem_Repeat 49059 49298 183 + . . scaffold224 GLEAN mRNA 49099 49310 0.99912 - . ID=CGI_10003616; scaffold224 TRF Tandem_Repeat 49099 49310 170 + . . scaffold39804 GLEAN mRNA 17692 17949 1 + . ID=CGI_10003618; scaffold39804 WUBlastX LINE_L1-Tx1 17692 17949 44 - . . scaffold39804 GLEAN mRNA 17767 18012 1 + . ID=CGI_10003618; scaffold39804 WUBlastX LINE_L1-Tx1 17767 18012 67 - . . scaffold39804 GLEAN mRNA 17752 17973 1 + . ID=CGI_10003618; scaffold39804 WUBlastX LINE_L1-Tx1 17752 17973 69 - . . scaffold39804 GLEAN mRNA 18330 18596 1 + . ID=CGI_10003618; scaffold39804 WUBlastX LINE_L1-Tx1 18330 18596 50 - . . scaffold39804 GLEAN mRNA 34287 34321 0.829502 + . ID=CGI_10003619; scaffold39804 TRF Tandem_Repeat 34287 34321 52 + . . scaffold39804 GLEAN mRNA 34286 34337 0.829502 + . ID=CGI_10003619; scaffold39804 TRF Tandem_Repeat 34286 34337 50 + . . scaffold39804 GLEAN mRNA 34286 34338 0.829502 + . ID=CGI_10003619; scaffold39804 TRF Tandem_Repeat 34286 34338 70 + . . scaffold39804 GLEAN mRNA 54167 54457 0.999999 - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_RTE-X 54167 54457 108 - . . scaffold39804 GLEAN mRNA 54761 55000 0.999999 - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_L2 54761 55000 41 - . . scaffold39804 GLEAN mRNA 54071 54382 0.999999 - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_RTE-BovB 54071 54382 60 - . . scaffold39804 GLEAN mRNA 53835 54164 0.999999 - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_CR1 53835 54164 28 - . . scaffold39804 GLEAN mRNA 54137 54493 0.999999 - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_CR1-L2 54137 54493 79 - . . scaffold39804 GLEAN mRNA 54737 54910 0.999999 - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_L2 54737 54910 61 - . . scaffold39804 GLEAN mRNA 53881 54027 0.999999 - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_Jockey 53881 54027 34 - . . scaffold39804 GLEAN mRNA 52207 52539 0.999999 - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_RTE-BovB 52207 52539 64 - . . scaffold39804 GLEAN mRNA 52276 52467 0.999999 - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_RTE-BovB 52276 52467 71 - . . scaffold39804 GLEAN mRNA 54692 54913 0.999999 - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_L2 54692 54913 50 - . . scaffold39804 GLEAN mRNA 54563 54910 0.999999 - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_Jockey 54563 54910 25 - . . scaffold39804 GLEAN mRNA 53766 53882 0.999999 - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_L2 53766 53882 20 - . . scaffold39804 GLEAN mRNA 67160 67207 0.999999 - . ID=CGI_10003622; scaffold39804 TRF Tandem_Repeat 67160 67207 64 + . . scaffold1818 GLEAN mRNA 20640 21787 0.992021 - . ID=CGI_10003625; scaffold1818 TRF Tandem_Repeat 20640 21787 1155 + . . scaffold1818 GLEAN mRNA 42744 42893 0.992021 - . ID=CGI_10003625; scaffold1818 WUBlastX DNA_Zator 42744 42893 46 - . . scaffold1818 GLEAN mRNA 53337 54350 0.992021 - . ID=CGI_10003625; scaffold1818 TRF Tandem_Repeat 53337 54350 1152 + . . scaffold1818 GLEAN mRNA 53337 54350 1 + . ID=CGI_10003626; scaffold1818 TRF Tandem_Repeat 53337 54350 1152 + . . scaffold1799 GLEAN mRNA 4601 4632 1 - . ID=CGI_10003629; scaffold1799 TRF Tandem_Repeat 4601 4632 64 + . . scaffold1799 GLEAN mRNA 17798 17904 1 - . ID=CGI_10003629; scaffold1799 TRF Tandem_Repeat 17798 17904 124 + . . scaffold1799 GLEAN mRNA 18111 18285 1 - . ID=CGI_10003629; scaffold1799 TRF Tandem_Repeat 18111 18285 126 + . . scaffold1799 GLEAN mRNA 18275 18553 1 - . ID=CGI_10003629; scaffold1799 TRF Tandem_Repeat 18275 18553 107 + . . scaffold1799 GLEAN mRNA 18224 18524 1 - . ID=CGI_10003629; scaffold1799 TRF Tandem_Repeat 18224 18524 170 + . . scaffold1799 GLEAN mRNA 16338 16591 1 - . ID=CGI_10003629; scaffold1799 TRF Tandem_Repeat 16338 16591 61 + . . scaffold1799 GLEAN mRNA 16374 16603 1 - . ID=CGI_10003629; scaffold1799 TRF Tandem_Repeat 16374 16603 193 + . . scaffold1799 GLEAN mRNA 16350 16603 1 - . ID=CGI_10003629; scaffold1799 TRF Tandem_Repeat 16350 16603 216 + . . scaffold1799 GLEAN mRNA 16320 16613 1 - . ID=CGI_10003629; scaffold1799 TRF Tandem_Repeat 16320 16613 190 + . . scaffold1799 GLEAN mRNA 52623 52892 0.999949 - . ID=CGI_10003631; scaffold1799 TRF Tandem_Repeat 52623 52892 261 + . . scaffold1799 GLEAN mRNA 53930 53974 0.999949 - . ID=CGI_10003631; scaffold1799 TRF Tandem_Repeat 53930 53974 81 + . . scaffold1799 GLEAN mRNA 53982 54022 0.999949 - . ID=CGI_10003631; scaffold1799 TRF Tandem_Repeat 53982 54022 64 + . . scaffold1799 GLEAN mRNA 54378 54457 0.999949 - . ID=CGI_10003631; scaffold1799 TRF Tandem_Repeat 54378 54457 153 + . . scaffold1799 GLEAN mRNA 60025 60460 0.999949 - . ID=CGI_10003631; scaffold1799 TRF Tandem_Repeat 60025 60460 349 + . . scaffold1799 GLEAN mRNA 60012 60424 0.999949 - . ID=CGI_10003631; scaffold1799 TRF Tandem_Repeat 60012 60424 307 + . . scaffold1799 GLEAN mRNA 58956 59066 0.999949 - . ID=CGI_10003631; scaffold1799 WUBlastX LTR_Ngaro 58956 59066 76 - . . scaffold1799 GLEAN mRNA 58419 58781 0.999949 - . ID=CGI_10003631; scaffold1799 WUBlastX LTR_Ngaro 58419 58781 88 - . . scaffold1799 GLEAN mRNA 58772 58969 0.999949 - . ID=CGI_10003631; scaffold1799 WUBlastX LTR_Ngaro 58772 58969 75 - . . scaffold1799 GLEAN mRNA 59240 59566 0.999949 - . ID=CGI_10003631; scaffold1799 WUBlastX LTR_Ngaro 59240 59566 229 - . . scaffold1799 GLEAN mRNA 57831 57986 0.999949 - . ID=CGI_10003631; scaffold1799 WUBlastX LTR_Ngaro 57831 57986 61 - . . scaffold1799 GLEAN mRNA 57876 58031 0.999949 - . ID=CGI_10003631; scaffold1799 WUBlastX LTR_Ngaro 57876 58031 81 - . . scaffold1799 GLEAN mRNA 57855 58787 0.999949 - . ID=CGI_10003631; scaffold1799 WUBlastX LTR_Ngaro 57855 58787 67 - . . scaffold1799 GLEAN mRNA 59073 59267 0.999949 - . ID=CGI_10003631; scaffold1799 WUBlastX LTR_Ngaro 59073 59267 97 - . . scaffold1799 GLEAN mRNA 59575 60009 0.999949 - . ID=CGI_10003631; scaffold1799 WUBlastX LTR_Ngaro 59575 60009 289 - . . scaffold1799 GLEAN mRNA 65540 65583 0.999949 - . ID=CGI_10003631; scaffold1799 TRF Tandem_Repeat 65540 65583 61 + . . scaffold796 GLEAN mRNA 78120 78163 1 - . ID=CGI_10003633; scaffold796 TRF Tandem_Repeat 78120 78163 88 + . . scaffold1353 GLEAN mRNA 26984 27016 0.99874 - . ID=CGI_10003639; scaffold1353 TRF Tandem_Repeat 26984 27016 66 + . . scaffold1353 GLEAN mRNA 27016 27071 0.99874 - . ID=CGI_10003639; scaffold1353 TRF Tandem_Repeat 27016 27071 112 + . . scaffold1088 GLEAN mRNA 9737 9841 0.998361 - . ID=CGI_10003647; scaffold1088 TRF Tandem_Repeat 9737 9841 99 + . . scaffold1088 GLEAN mRNA 37106 37702 0.893641 - . ID=CGI_10003651; scaffold1088 WUBlastX LINE_R2-Hero 37106 37702 134 + . . scaffold1088 GLEAN mRNA 37533 37742 0.893641 - . ID=CGI_10003651; scaffold1088 WUBlastX LINE_R2-Hero 37533 37742 68 + . . scaffold1088 GLEAN mRNA 63516 63548 0.998923 - . ID=CGI_10003652; scaffold1088 TRF Tandem_Repeat 63516 63548 66 + . . scaffold39858 GLEAN mRNA 11319 11366 1 - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 11319 11480 102 - . . scaffold39858 GLEAN mRNA 10445 10579 1 - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 10445 10579 54 - . . scaffold39858 GLEAN mRNA 11319 11366 1 - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 11319 11447 104 - . . scaffold39858 GLEAN mRNA 10708 10965 1 - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 10708 10965 109 - . . scaffold39858 GLEAN mRNA 11046 11237 1 - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 11046 11237 96 - . . scaffold39858 GLEAN mRNA 10212 10421 1 - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 10212 10421 92 - . . scaffold39858 GLEAN mRNA 11040 11279 1 - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 11040 11279 60 - . . scaffold39858 GLEAN mRNA 71159 71331 0.99005 + . ID=CGI_10003660; scaffold39858 TRF Tandem_Repeat 71159 71331 301 + . . scaffold39858 GLEAN mRNA 71531 71883 0.99005 + . ID=CGI_10003660; scaffold39858 TRF Tandem_Repeat 71531 71883 260 + . . scaffold39858 GLEAN mRNA 72154 72459 0.99005 + . ID=CGI_10003660; scaffold39858 WUBlastX LTR_Pao 72154 72459 286 - . . scaffold39858 GLEAN mRNA 73353 73451 0.99005 + . ID=CGI_10003660; scaffold39858 WUBlastX LTR_Pao 73353 73451 21 - . . scaffold39858 GLEAN mRNA 72154 72552 0.99005 + . ID=CGI_10003660; scaffold39858 WUBlastX LTR_Pao 72154 72552 94 - . . scaffold1706 GLEAN mRNA 3479 3862 1 - . ID=CGI_10003661; scaffold1706 WUBlastX DNA_Kolobok-Hyd 3479 3886 47 - . . scaffold1706 GLEAN mRNA 46991 47521 0.330403 - . ID=CGI_10003662; scaffold1706 WUBlastX LINE_L1 46991 47521 29 + . . scaffold1706 GLEAN mRNA 45846 46556 0.330403 - . ID=CGI_10003662; scaffold1706 WUBlastX LINE_L1 45846 46556 71 + . . scaffold1706 GLEAN mRNA 46645 46788 0.330403 - . ID=CGI_10003662; scaffold1706 WUBlastX LINE_L1 46645 46788 35 + . . scaffold1706 GLEAN mRNA 45618 46463 0.330403 - . ID=CGI_10003662; scaffold1706 WUBlastX LINE_L1-Tx1 45618 46463 66 + . . scaffold1706 GLEAN mRNA 37817 38050 0.330403 - . ID=CGI_10003662; scaffold1706 WUBlastX DNA_Kolobok 37817 38050 78 - . . scaffold1706 GLEAN mRNA 37786 37981 0.330403 - . ID=CGI_10003662; scaffold1706 WUBlastX DNA_Kolobok 37769 37981 93 - . . scaffold1706 GLEAN mRNA 45834 46430 0.330403 - . ID=CGI_10003662; scaffold1706 WUBlastX LINE_L1-Tx1 45834 46430 261 + . . scaffold1706 GLEAN mRNA 47066 47497 0.330403 - . ID=CGI_10003662; scaffold1706 WUBlastX LINE_L1-Tx1 47066 47497 94 + . . scaffold1706 GLEAN mRNA 53949 54023 0.330403 - . ID=CGI_10003662; scaffold1706 TRF Tandem_Repeat 53949 54023 51 + . . scaffold1706 GLEAN mRNA 53970 53999 0.330403 - . ID=CGI_10003662; scaffold1706 TRF Tandem_Repeat 53970 53999 51 + . . scaffold1437 GLEAN mRNA 12655 13363 0.99909 + . ID=CGI_10003664; scaffold1437 TRF Tandem_Repeat 12655 13363 956 + . . scaffold1437 GLEAN mRNA 12673 13351 0.99909 + . ID=CGI_10003664; scaffold1437 TRF Tandem_Repeat 12673 13351 974 + . . scaffold1437 GLEAN mRNA 13266 13347 0.99909 + . ID=CGI_10003664; scaffold1437 TRF Tandem_Repeat 13266 13347 54 + . . scaffold1437 GLEAN mRNA 15019 15111 0.99909 + . ID=CGI_10003664; scaffold1437 TRF Tandem_Repeat 15019 15111 120 + . . scaffold1437 GLEAN mRNA 20625 20804 0.99909 + . ID=CGI_10003664; scaffold1437 WUBlastX DNA_TcMar-Fot1 20625 20804 60 + . . scaffold1437 GLEAN mRNA 56457 56481 0.528952 - . ID=CGI_10003666; scaffold1437 TRF Tandem_Repeat 56457 56481 50 + . . scaffold1437 GLEAN mRNA 67199 67257 1 - . ID=CGI_10003668; scaffold1437 TRF Tandem_Repeat 67199 67257 50 + . . scaffold39880 GLEAN mRNA 12870 12998 1 - . ID=CGI_10003671; scaffold39880 TRF Tandem_Repeat 12870 12998 80 + . . scaffold39880 GLEAN mRNA 64421 64487 0.999612 + . ID=CGI_10003672; scaffold39880 TRF Tandem_Repeat 64421 64487 80 + . . scaffold39880 GLEAN mRNA 67472 67509 0.999612 + . ID=CGI_10003672; scaffold39880 TRF Tandem_Repeat 67472 67509 58 + . . scaffold39880 GLEAN mRNA 71140 71178 0.999612 + . ID=CGI_10003672; scaffold39880 TRF Tandem_Repeat 71140 71178 78 + . . scaffold1696 GLEAN mRNA 3286 4203 0.414457 - . ID=CGI_10003674; scaffold1696 WUBlastX LTR_Pao 3286 4203 818 + . . scaffold1696 GLEAN mRNA 2524 2757 0.414457 - . ID=CGI_10003674; scaffold1696 WUBlastX LTR_Pao 2524 2757 27 + . . scaffold1696 GLEAN mRNA 3188 3280 0.414457 - . ID=CGI_10003674; scaffold1696 WUBlastX LTR_Pao 3188 3280 74 + . . scaffold1696 GLEAN mRNA 2760 3203 0.414457 - . ID=CGI_10003674; scaffold1696 WUBlastX LTR_Pao 2760 3203 270 + . . scaffold1696 GLEAN mRNA 17117 17163 0.414457 - . ID=CGI_10003674; scaffold1696 TRF Tandem_Repeat 17117 17163 94 + . . scaffold1696 GLEAN mRNA 21031 21085 0.414457 - . ID=CGI_10003674; scaffold1696 TRF Tandem_Repeat 21031 21085 110 + . . scaffold1696 GLEAN mRNA 33438 33481 0.999287 + . ID=CGI_10003675; scaffold1696 TRF Tandem_Repeat 33438 33481 63 + . . scaffold39900 GLEAN mRNA 53768 54031 0.456972 - . ID=CGI_10003680; scaffold39900 WUBlastX LTR_ERV1 53768 54031 24 - . . scaffold39900 GLEAN mRNA 65377 65436 0.885101 + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 65377 65436 31 + . . scaffold39900 GLEAN mRNA 64855 65370 0.885101 + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 64855 65370 162 + . . scaffold39900 GLEAN mRNA 64804 65271 0.885101 + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 64804 65271 287 + . . scaffold39900 GLEAN mRNA 65392 65436 0.885101 + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 65392 65436 33 + . . scaffold39900 GLEAN mRNA 67240 67286 0.885101 + . ID=CGI_10003685; scaffold39900 TRF Tandem_Repeat 67240 67286 53 + . . scaffold39900 GLEAN mRNA 69640 70800 0.885101 + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 69640 70800 191 - . . scaffold39900 GLEAN mRNA 67619 69724 0.885101 + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 67619 69724 1279 - . . scaffold39900 GLEAN mRNA 69640 70179 0.885101 + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 69640 70179 369 - . . scaffold39900 GLEAN mRNA 66223 66678 0.885101 + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 66223 66678 173 + . . scaffold39900 GLEAN mRNA 70836 71288 0.885101 + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 70836 71288 110 - . . scaffold39900 GLEAN mRNA 65436 66224 0.885101 + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 65436 66224 433 + . . scaffold1002 GLEAN mRNA 59300 59591 1 - . ID=CGI_10003691; scaffold1002 TRF Tandem_Repeat 59300 59591 261 + . . scaffold1002 GLEAN mRNA 59505 59595 1 - . ID=CGI_10003691; scaffold1002 TRF Tandem_Repeat 59505 59595 51 + . . scaffold682 GLEAN mRNA 31246 31890 1 + . ID=CGI_10003695; scaffold682 TRF Tandem_Repeat 31246 31890 1039 + . . scaffold608 GLEAN mRNA 2831 4118 0.993881 - . ID=CGI_10003699; scaffold608 TRF Tandem_Repeat 2831 4118 2228 + . . scaffold608 GLEAN mRNA 7144 8329 0.993881 - . ID=CGI_10003699; scaffold608 TRF Tandem_Repeat 7144 8329 593 + . . scaffold608 GLEAN mRNA 7144 8329 0.817658 + . ID=CGI_10003700; scaffold608 TRF Tandem_Repeat 7144 8329 593 + . . scaffold608 GLEAN mRNA 27922 28610 0.817658 + . ID=CGI_10003700; scaffold608 TRF Tandem_Repeat 27922 28610 936 + . . scaffold608 GLEAN mRNA 27922 28610 0.817658 + . ID=CGI_10003700; scaffold608 TRF Tandem_Repeat 27922 28610 975 + . . scaffold608 GLEAN mRNA 27922 28610 0.817658 + . ID=CGI_10003700; scaffold608 TRF Tandem_Repeat 27922 28610 913 + . . scaffold608 GLEAN mRNA 34848 34877 0.817658 + . ID=CGI_10003700; scaffold608 TRF Tandem_Repeat 34848 34877 51 + . . scaffold608 GLEAN mRNA 36583 37174 0.817658 + . ID=CGI_10003700; scaffold608 TRF Tandem_Repeat 36583 37174 871 + . . scaffold608 GLEAN mRNA 37208 37466 0.817658 + . ID=CGI_10003700; scaffold608 TRF Tandem_Repeat 37208 37466 150 + . . scaffold608 GLEAN mRNA 39968 40249 0.817658 + . ID=CGI_10003700; scaffold608 TRF Tandem_Repeat 39968 40249 465 + . . scaffold608 GLEAN mRNA 39968 40287 0.817658 + . ID=CGI_10003700; scaffold608 TRF Tandem_Repeat 39968 40287 405 + . . scaffold608 GLEAN mRNA 32437 33495 0.817658 + . ID=CGI_10003700; scaffold608 TRF Tandem_Repeat 32437 33495 1569 + . . scaffold608 GLEAN mRNA 32437 33495 0.817658 + . ID=CGI_10003700; scaffold608 TRF Tandem_Repeat 32437 33495 1595 + . . scaffold941 GLEAN mRNA 654 892 1 - . ID=CGI_10003702; scaffold941 TRF Tandem_Repeat 654 892 327 + . . scaffold39972 GLEAN mRNA 41384 41911 0.995966 + . ID=CGI_10003708; scaffold39972 WUBlastX LINE_L1 41384 41911 93 + . . scaffold39972 GLEAN mRNA 41235 41378 0.995966 + . ID=CGI_10003708; scaffold39972 WUBlastX LINE_L1-Tx1 41235 41378 68 + . . scaffold39972 GLEAN mRNA 41405 41797 0.995966 + . ID=CGI_10003708; scaffold39972 WUBlastX LINE_L1-Tx1 41405 41797 173 + . . scaffold39972 GLEAN mRNA 40444 41259 0.995966 + . ID=CGI_10003708; scaffold39972 WUBlastX LINE_L1 40444 41259 409 + . . scaffold39972 GLEAN mRNA 42046 42297 0.995966 + . ID=CGI_10003708; scaffold39972 WUBlastX LINE_L1 42046 42297 29 + . . scaffold39972 GLEAN mRNA 41324 41785 0.995966 + . ID=CGI_10003708; scaffold39972 WUBlastX LINE_L1 41324 41785 116 + . . scaffold39972 GLEAN mRNA 39460 39948 0.995966 + . ID=CGI_10003708; scaffold39972 WUBlastX LINE_RTE-X 39460 39948 38 + . . scaffold39972 GLEAN mRNA 49856 49901 0.885383 + . ID=CGI_10003709; scaffold39972 TRF Tandem_Repeat 49856 49901 92 + . . scaffold39972 GLEAN mRNA 52567 52959 0.885383 + . ID=CGI_10003709; scaffold39972 WUBlastX LTR_Gypsy 52567 52959 194 - . . scaffold39972 GLEAN mRNA 53536 53775 0.885383 + . ID=CGI_10003709; scaffold39972 WUBlastX LTR_Gypsy 53536 53775 155 - . . scaffold39972 GLEAN mRNA 53422 53775 0.885383 + . ID=CGI_10003709; scaffold39972 WUBlastX LTR_Gypsy 53422 53775 67 - . . scaffold39972 GLEAN mRNA 53282 53539 0.885383 + . ID=CGI_10003709; scaffold39972 WUBlastX LTR_Gypsy 53282 53539 49 - . . scaffold39972 GLEAN mRNA 52459 52974 0.885383 + . ID=CGI_10003709; scaffold39972 WUBlastX LTR_Gypsy 52459 52974 188 - . . scaffold39972 GLEAN mRNA 53067 53375 0.885383 + . ID=CGI_10003709; scaffold39972 WUBlastX LTR_Gypsy 53067 53375 39 - . . scaffold331 GLEAN mRNA 55938 55989 0.654733 + . ID=CGI_10003715; scaffold331 TRF Tandem_Repeat 55938 55989 104 + . . scaffold331 GLEAN mRNA 56242 56273 0.654733 + . ID=CGI_10003715; scaffold331 TRF Tandem_Repeat 56242 56273 64 + . . scaffold331 GLEAN mRNA 56300 56333 0.654733 + . ID=CGI_10003715; scaffold331 TRF Tandem_Repeat 56300 56333 68 + . . scaffold39958 GLEAN mRNA 11817 11853 0.992149 + . ID=CGI_10003716; scaffold39958 TRF Tandem_Repeat 11817 11853 74 + . . scaffold39958 GLEAN mRNA 12156 12182 0.992149 + . ID=CGI_10003716; scaffold39958 TRF Tandem_Repeat 12156 12182 54 + . . scaffold39958 GLEAN mRNA 20249 20331 0.610397 + . ID=CGI_10003717; scaffold39958 TRF Tandem_Repeat 20249 20331 112 + . . scaffold39958 GLEAN mRNA 56411 56549 0.994425 + . ID=CGI_10003718; scaffold39958 TRF Tandem_Repeat 56411 56549 144 + . . scaffold39958 GLEAN mRNA 57185 57386 0.994425 + . ID=CGI_10003718; scaffold39958 TRF Tandem_Repeat 57185 57386 170 + . . scaffold39958 GLEAN mRNA 57214 57380 0.994425 + . ID=CGI_10003718; scaffold39958 TRF Tandem_Repeat 57214 57380 160 + . . scaffold39958 GLEAN mRNA 57193 57624 0.994425 + . ID=CGI_10003718; scaffold39958 TRF Tandem_Repeat 57193 57624 428 + . . scaffold39958 GLEAN mRNA 57449 57622 0.994425 + . ID=CGI_10003718; scaffold39958 TRF Tandem_Repeat 57449 57622 168 + . . scaffold39958 GLEAN mRNA 63908 63955 0.994425 + . ID=CGI_10003718; scaffold39958 TRF Tandem_Repeat 63908 63955 96 + . . scaffold696 GLEAN mRNA 10494 10530 0.999968 + . ID=CGI_10003719; scaffold696 TRF Tandem_Repeat 10494 10530 65 + . . scaffold696 GLEAN mRNA 12222 12246 0.999968 + . ID=CGI_10003719; scaffold696 TRF Tandem_Repeat 12222 12246 50 + . . scaffold696 GLEAN mRNA 11510 12019 0.999968 + . ID=CGI_10003719; scaffold696 WUBlastX LINE_RTE-X 11510 12019 74 + . . scaffold696 GLEAN mRNA 11591 12022 0.999968 + . ID=CGI_10003719; scaffold696 WUBlastX LINE_RTE-X 11591 12022 114 + . . scaffold696 GLEAN mRNA 8219 8902 0.999968 + . ID=CGI_10003719; scaffold696 WUBlastX LINE_RTE-X 8219 8902 31 + . . scaffold696 GLEAN mRNA 51452 52907 0.997343 - . ID=CGI_10003721; scaffold696 TRF Tandem_Repeat 51452 52907 2286 + . . scaffold696 GLEAN mRNA 51452 52907 0.997343 - . ID=CGI_10003721; scaffold696 TRF Tandem_Repeat 51452 52907 2239 + . . scaffold696 GLEAN mRNA 52931 52984 0.997343 - . ID=CGI_10003721; scaffold696 TRF Tandem_Repeat 52931 52984 54 + . . scaffold696 GLEAN mRNA 52931 52997 0.997343 - . ID=CGI_10003721; scaffold696 TRF Tandem_Repeat 52931 52997 89 + . . scaffold696 GLEAN mRNA 52938 52997 0.997343 - . ID=CGI_10003721; scaffold696 TRF Tandem_Repeat 52938 52997 75 + . . scaffold696 GLEAN mRNA 56592 56629 0.997343 - . ID=CGI_10003721; scaffold696 TRF Tandem_Repeat 56592 56629 58 + . . scaffold696 GLEAN mRNA 56629 56656 0.997343 - . ID=CGI_10003721; scaffold696 TRF Tandem_Repeat 56629 56656 56 + . . scaffold696 GLEAN mRNA 65278 66138 0.999999 + . ID=CGI_10003722; scaffold696 TRF Tandem_Repeat 65278 66138 1268 + . . scaffold696 GLEAN mRNA 71989 72088 0.811167 - . ID=CGI_10003723; scaffold696 TRF Tandem_Repeat 71989 72088 191 + . . scaffold39966 GLEAN mRNA 8979 9344 0.999675 + . ID=CGI_10003724; scaffold39966 WUBlastX LTR_Gypsy 8979 9344 187 + . . scaffold39966 GLEAN mRNA 9346 10857 0.999675 + . ID=CGI_10003724; scaffold39966 WUBlastX LTR_Gypsy 9346 10857 484 + . . scaffold39966 GLEAN mRNA 10875 11567 0.999675 + . ID=CGI_10003724; scaffold39966 WUBlastX LTR_Gypsy 10875 11567 499 + . . scaffold39966 GLEAN mRNA 11591 12058 0.999675 + . ID=CGI_10003724; scaffold39966 WUBlastX LTR_Gypsy 11591 12058 85 + . . scaffold39966 GLEAN mRNA 11591 11959 0.999675 + . ID=CGI_10003724; scaffold39966 WUBlastX LTR_Gypsy 11591 11959 223 + . . scaffold39966 GLEAN mRNA 7739 8734 0.999675 + . ID=CGI_10003724; scaffold39966 WUBlastX DNA_Zator 7739 8734 131 + . . scaffold39966 GLEAN mRNA 10854 10925 0.999675 + . ID=CGI_10003724; scaffold39966 WUBlastX LTR_Gypsy 10854 10925 20 + . . scaffold39966 GLEAN mRNA 17836 17869 0.999675 + . ID=CGI_10003724; scaffold39966 TRF Tandem_Repeat 17836 17869 59 + . . scaffold39966 GLEAN mRNA 18505 18534 0.999675 + . ID=CGI_10003724; scaffold39966 TRF Tandem_Repeat 18505 18534 60 + . . scaffold260 GLEAN mRNA 57148 57195 0.848653 - . ID=CGI_10003729; scaffold260 TRF Tandem_Repeat 57148 57195 71 + . . scaffold260 GLEAN mRNA 62732 62884 0.848653 - . ID=CGI_10003729; scaffold260 WUBlastX LINE_L2 62732 62884 76 + . . scaffold260 GLEAN mRNA 62759 62887 0.848653 - . ID=CGI_10003729; scaffold260 WUBlastX LINE_L2 62759 62887 101 + . . scaffold260 GLEAN mRNA 62702 62884 0.848653 - . ID=CGI_10003729; scaffold260 WUBlastX LINE_L2 62702 62884 56 + . . scaffold260 GLEAN mRNA 62597 62866 0.848653 - . ID=CGI_10003729; scaffold260 WUBlastX LINE_L2 62597 62866 24 + . . scaffold260 GLEAN mRNA 48994 49308 0.848653 - . ID=CGI_10003729; scaffold260 WUBlastX DNA_Crypton 48994 49308 105 - . . scaffold636 GLEAN mRNA 1490 1563 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 1490 1563 148 + . . scaffold636 GLEAN mRNA 6099 6991 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 6099 6991 918 + . . scaffold636 GLEAN mRNA 7854 7890 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 7854 7890 65 + . . scaffold636 GLEAN mRNA 8687 9492 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 8687 9492 1328 + . . scaffold636 GLEAN mRNA 12022 12797 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 12022 12797 1040 + . . scaffold636 GLEAN mRNA 14458 14843 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 14458 14843 476 + . . scaffold636 GLEAN mRNA 14899 14989 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 14899 14989 146 + . . scaffold636 GLEAN mRNA 14955 15044 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 14955 15044 99 + . . scaffold636 GLEAN mRNA 16643 16749 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 16643 16749 142 + . . scaffold636 GLEAN mRNA 16804 17040 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 16804 17040 465 + . . scaffold636 GLEAN mRNA 19914 20166 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 19914 20166 488 + . . scaffold636 GLEAN mRNA 21224 21376 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 21224 21376 252 + . . scaffold636 GLEAN mRNA 21822 22254 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 21822 22254 724 + . . scaffold636 GLEAN mRNA 22369 22402 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 22369 22402 52 + . . scaffold636 GLEAN mRNA 27167 27424 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 27167 27424 285 + . . scaffold636 GLEAN mRNA 37003 37277 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 37003 37277 433 + . . scaffold636 GLEAN mRNA 38519 38724 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 38519 38724 324 + . . scaffold636 GLEAN mRNA 40036 40115 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 40036 40307 365 + . . scaffold40016 GLEAN mRNA 9401 9718 0.93692 - . ID=CGI_10003734; scaffold40016 TRF Tandem_Repeat 9401 9718 209 + . . scaffold1735 GLEAN mRNA 33649 33674 1 + . ID=CGI_10003743; scaffold1735 TRF Tandem_Repeat 33649 33674 52 + . . scaffold1735 GLEAN mRNA 33672 33716 1 + . ID=CGI_10003743; scaffold1735 TRF Tandem_Repeat 33672 33716 90 + . . scaffold1735 GLEAN mRNA 61794 61845 0.99883 - . ID=CGI_10003744; scaffold1735 TRF Tandem_Repeat 61794 61845 90 + . . scaffold1735 GLEAN mRNA 63662 63687 0.99883 - . ID=CGI_10003744; scaffold1735 TRF Tandem_Repeat 63662 63687 52 + . . scaffold1735 GLEAN mRNA 65266 65420 0.999998 - . ID=CGI_10003745; scaffold1735 TRF Tandem_Repeat 65266 65420 283 + . . scaffold1735 GLEAN mRNA 73522 73546 0.999998 - . ID=CGI_10003745; scaffold1735 TRF Tandem_Repeat 73522 73546 50 + . . scaffold39976 GLEAN mRNA 61074 62582 0.546253 - . ID=CGI_10003749; scaffold39976 TRF Tandem_Repeat 61074 62582 1798 + . . scaffold39976 GLEAN mRNA 61073 62582 0.546253 - . ID=CGI_10003749; scaffold39976 TRF Tandem_Repeat 61073 62582 1824 + . . scaffold39976 GLEAN mRNA 78238 78271 0.546253 - . ID=CGI_10003749; scaffold39976 TRF Tandem_Repeat 78238 78271 52 + . . scaffold39998 GLEAN mRNA 47610 47658 0.893806 + . ID=CGI_10003751; scaffold39998 TRF Tandem_Repeat 47610 47658 82 + . . scaffold39998 GLEAN mRNA 51816 51873 0.893806 + . ID=CGI_10003751; scaffold39998 TRF Tandem_Repeat 51816 51873 116 + . . scaffold39998 GLEAN mRNA 52904 53083 0.893806 + . ID=CGI_10003751; scaffold39998 TRF Tandem_Repeat 52904 53083 351 + . . scaffold39998 GLEAN mRNA 59081 59138 0.841347 + . ID=CGI_10003752; scaffold39998 TRF Tandem_Repeat 59081 59138 109 + . . scaffold39998 GLEAN mRNA 70201 70251 0.841347 + . ID=CGI_10003752; scaffold39998 TRF Tandem_Repeat 70201 70251 66 + . . scaffold39960 GLEAN mRNA 42508 42552 0.276038 + . ID=CGI_10003755; scaffold39960 TRF Tandem_Repeat 42508 42552 81 + . . scaffold39960 GLEAN mRNA 42809 43474 0.276038 + . ID=CGI_10003755; scaffold39960 TRF Tandem_Repeat 42809 43474 1059 + . . scaffold39960 GLEAN mRNA 44659 44688 0.276038 + . ID=CGI_10003755; scaffold39960 TRF Tandem_Repeat 44659 44688 60 + . . scaffold39960 GLEAN mRNA 62168 62299 0.999675 + . ID=CGI_10003758; scaffold39960 TRF Tandem_Repeat 62168 62299 52 + . . scaffold39960 GLEAN mRNA 62226 62376 0.999675 + . ID=CGI_10003758; scaffold39960 TRF Tandem_Repeat 62226 62376 74 + . . scaffold39974 GLEAN mRNA 69202 69807 0.969362 + . ID=CGI_10003760; scaffold39974 WUBlastX LTR_Ngaro 69202 69807 106 + . . scaffold39974 GLEAN mRNA 69863 70363 0.969362 + . ID=CGI_10003760; scaffold39974 WUBlastX LTR_Ngaro 69863 70363 346 + . . scaffold39974 GLEAN mRNA 69172 69630 0.969362 + . ID=CGI_10003760; scaffold39974 WUBlastX LTR_Ngaro 69172 69630 149 + . . scaffold39974 GLEAN mRNA 68959 69642 0.969362 + . ID=CGI_10003760; scaffold39974 WUBlastX LTR_Ngaro 68959 69642 147 + . . scaffold39974 GLEAN mRNA 67732 67989 0.969362 + . ID=CGI_10003760; scaffold39974 WUBlastX LINE_RTE-X 67579 67989 49 + . . scaffold40038 GLEAN mRNA 6139 6237 1 - . ID=CGI_10003771; scaffold40038 WUBlastX LTR_ERVK 6139 6237 47 - . . scaffold40038 GLEAN mRNA 6718 6843 1 - . ID=CGI_10003771; scaffold40038 WUBlastX LTR_ERVK 6718 6843 72 - . . scaffold40038 GLEAN mRNA 49600 49746 0.35346 - . ID=CGI_10003773; scaffold40038 TRF Tandem_Repeat 49600 49746 122 + . . scaffold645 GLEAN mRNA 2961 3368 0.999821 + . ID=CGI_10003781; scaffold645 TRF Tandem_Repeat 2961 3368 798 + . . scaffold40076 GLEAN mRNA 817 1179 0.999624 + . ID=CGI_10003785; scaffold40076 TRF Tandem_Repeat 817 1179 71 + . . scaffold40076 GLEAN mRNA 818 1178 0.999624 + . ID=CGI_10003785; scaffold40076 TRF Tandem_Repeat 818 1178 91 + . . scaffold40076 GLEAN mRNA 818 874 0.999624 + . ID=CGI_10003785; scaffold40076 TRF Tandem_Repeat 818 874 53 + . . scaffold40076 GLEAN mRNA 842 886 0.999624 + . ID=CGI_10003785; scaffold40076 TRF Tandem_Repeat 842 886 54 + . . scaffold40076 GLEAN mRNA 951 1178 0.999624 + . ID=CGI_10003785; scaffold40076 TRF Tandem_Repeat 951 1178 66 + . . scaffold40076 GLEAN mRNA 2445 2549 0.999624 + . ID=CGI_10003785; scaffold40076 TRF Tandem_Repeat 2445 2549 187 + . . scaffold40076 GLEAN mRNA 4535 4559 0.999624 + . ID=CGI_10003785; scaffold40076 TRF Tandem_Repeat 4535 4559 50 + . . scaffold40076 GLEAN mRNA 7782 8216 0.999624 + . ID=CGI_10003785; scaffold40076 TRF Tandem_Repeat 7782 8216 543 + . . scaffold40076 GLEAN mRNA 11163 11213 0.999624 + . ID=CGI_10003785; scaffold40076 TRF Tandem_Repeat 11163 11213 93 + . . scaffold40076 GLEAN mRNA 63575 63757 0.72657 + . ID=CGI_10003787; scaffold40076 TRF Tandem_Repeat 63575 63757 179 + . . scaffold40076 GLEAN mRNA 62805 63179 0.72657 + . ID=CGI_10003787; scaffold40076 WUBlastX LTR_Gypsy 62805 63179 133 + . . scaffold40076 GLEAN mRNA 62600 62827 0.72657 + . ID=CGI_10003787; scaffold40076 WUBlastX LTR_Gypsy-Cigr 62600 62827 89 + . . scaffold40076 GLEAN mRNA 62408 62479 0.72657 + . ID=CGI_10003787; scaffold40076 WUBlastX LTR_Gypsy 62408 62479 30 + . . scaffold40006 GLEAN mRNA 80442 80517 1 + . ID=CGI_10003795; scaffold40006 TRF Tandem_Repeat 80442 80517 100 + . . scaffold40072 GLEAN mRNA 15328 15380 0.648545 - . ID=CGI_10003797; scaffold40072 TRF Tandem_Repeat 15328 15380 106 + . . scaffold40072 GLEAN mRNA 15427 15453 0.648545 - . ID=CGI_10003797; scaffold40072 TRF Tandem_Repeat 15427 15453 54 + . . scaffold40072 GLEAN mRNA 42023 42066 1 + . ID=CGI_10003799; scaffold40072 TRF Tandem_Repeat 42023 42066 61 + . . scaffold40072 GLEAN mRNA 49959 50007 0.776357 - . ID=CGI_10003800; scaffold40072 TRF Tandem_Repeat 49959 50007 80 + . . scaffold40072 GLEAN mRNA 51616 51654 0.776357 - . ID=CGI_10003800; scaffold40072 TRF Tandem_Repeat 51616 51654 51 + . . scaffold40072 GLEAN mRNA 51815 52087 0.776357 - . ID=CGI_10003800; scaffold40072 TRF Tandem_Repeat 51815 52087 185 + . . scaffold40072 GLEAN mRNA 64139 64215 0.997172 - . ID=CGI_10003801; scaffold40072 TRF Tandem_Repeat 64139 64215 65 + . . scaffold40072 GLEAN mRNA 70874 70907 0.997172 - . ID=CGI_10003801; scaffold40072 TRF Tandem_Repeat 70874 70907 68 + . . scaffold40072 GLEAN mRNA 72615 72714 0.997172 - . ID=CGI_10003801; scaffold40072 TRF Tandem_Repeat 72615 72714 67 + . . scaffold40072 GLEAN mRNA 72990 73062 0.997172 - . ID=CGI_10003801; scaffold40072 TRF Tandem_Repeat 72990 73062 119 + . . scaffold40072 GLEAN mRNA 73457 73500 0.997172 - . ID=CGI_10003801; scaffold40072 TRF Tandem_Repeat 73457 73500 88 + . . scaffold40072 GLEAN mRNA 73575 73623 0.997172 - . ID=CGI_10003801; scaffold40072 TRF Tandem_Repeat 73575 73623 50 + . . scaffold40072 GLEAN mRNA 68980 69189 0.997172 - . ID=CGI_10003801; scaffold40072 WUBlastX DNA_Crypton 68980 69189 68 + . . scaffold40050 GLEAN mRNA 15526 15573 0.999513 - . ID=CGI_10003806; scaffold40050 TRF Tandem_Repeat 15526 15573 78 + . . scaffold40050 GLEAN mRNA 47833 47877 0.999653 + . ID=CGI_10003808; scaffold40050 TRF Tandem_Repeat 47833 47877 65 + . . scaffold1721 GLEAN mRNA 18953 19006 0.544852 - . ID=CGI_10003819; scaffold1721 TRF Tandem_Repeat 18953 19006 81 + . . scaffold1721 GLEAN mRNA 40152 40204 0.975557 - . ID=CGI_10003820; scaffold1721 TRF Tandem_Repeat 40152 40204 106 + . . scaffold1721 GLEAN mRNA 57717 57747 0.999997 + . ID=CGI_10003821; scaffold1721 TRF Tandem_Repeat 57717 57747 62 + . . scaffold465 GLEAN mRNA 10553 10614 0.570137 - . ID=CGI_10003823; scaffold465 TRF Tandem_Repeat 10553 10614 106 + . . scaffold465 GLEAN mRNA 11539 11575 0.570137 - . ID=CGI_10003823; scaffold465 TRF Tandem_Repeat 11539 11575 74 + . . scaffold465 GLEAN mRNA 19080 19116 0.570137 - . ID=CGI_10003823; scaffold465 TRF Tandem_Repeat 19080 19116 74 + . . scaffold465 GLEAN mRNA 20537 20576 0.570137 - . ID=CGI_10003823; scaffold465 TRF Tandem_Repeat 20537 20576 80 + . . scaffold465 GLEAN mRNA 22830 23055 0.570137 - . ID=CGI_10003823; scaffold465 TRF Tandem_Repeat 22830 23055 407 + . . scaffold465 GLEAN mRNA 71605 71636 0.998573 - . ID=CGI_10003826; scaffold465 TRF Tandem_Repeat 71605 71636 64 + . . scaffold40068 GLEAN mRNA 22757 22816 0.859479 - . ID=CGI_10003834; scaffold40068 TRF Tandem_Repeat 22757 22816 111 + . . scaffold40068 GLEAN mRNA 23480 23532 0.859479 - . ID=CGI_10003834; scaffold40068 TRF Tandem_Repeat 23480 23532 52 + . . scaffold40068 GLEAN mRNA 49753 50046 0.493966 - . ID=CGI_10003835; scaffold40068 WUBlastX DNA_TcMar-Tc1 49753 50046 66 - . . scaffold40068 GLEAN mRNA 49583 49744 0.493966 - . ID=CGI_10003835; scaffold40068 WUBlastX DNA_TcMar-Tc1 49583 49744 29 - . . scaffold40068 GLEAN mRNA 49753 49908 0.493966 - . ID=CGI_10003835; scaffold40068 WUBlastX DNA_TcMar-Tc1 49753 49908 85 - . . scaffold40068 GLEAN mRNA 49753 49965 0.493966 - . ID=CGI_10003835; scaffold40068 WUBlastX DNA_TcMar-Tc1 49753 49965 78 - . . scaffold40068 GLEAN mRNA 73754 73838 0.490659 - . ID=CGI_10003836; scaffold40068 TRF Tandem_Repeat 73754 73838 152 + . . scaffold40094 GLEAN mRNA 6914 6962 0.999661 - . ID=CGI_10003838; scaffold40094 TRF Tandem_Repeat 6914 6962 98 + . . scaffold40094 GLEAN mRNA 43957 44010 0.998789 + . ID=CGI_10003840; scaffold40094 TRF Tandem_Repeat 43957 44010 108 + . . scaffold40094 GLEAN mRNA 50313 50349 0.998789 + . ID=CGI_10003840; scaffold40094 TRF Tandem_Repeat 50313 50349 74 + . . scaffold40094 GLEAN mRNA 57558 57602 1 - . ID=CGI_10003841; scaffold40094 TRF Tandem_Repeat 57558 57602 90 + . . scaffold40094 GLEAN mRNA 62407 62443 1 + . ID=CGI_10003842; scaffold40094 TRF Tandem_Repeat 62407 62443 74 + . . scaffold40094 GLEAN mRNA 63816 64013 1 + . ID=CGI_10003842; scaffold40094 WUBlastX DNA_Zator 63816 64013 74 - . . scaffold40094 GLEAN mRNA 64172 64255 1 + . ID=CGI_10003842; scaffold40094 WUBlastX DNA_Zator 64172 64255 30 - . . scaffold40094 GLEAN mRNA 77143 77221 0.953207 + . ID=CGI_10003843; scaffold40094 TRF Tandem_Repeat 77143 77221 95 + . . scaffold40094 GLEAN mRNA 77195 77228 0.953207 + . ID=CGI_10003843; scaffold40094 TRF Tandem_Repeat 77195 77228 50 + . . scaffold40080 GLEAN mRNA 24649 25263 0.997813 - . ID=CGI_10003844; scaffold40080 WUBlastX LINE_RTE-BovB 24649 25263 45 + . . scaffold40080 GLEAN mRNA 24514 25059 0.997813 - . ID=CGI_10003844; scaffold40080 WUBlastX LINE_RTE-BovB 24514 25059 68 + . . scaffold40080 GLEAN mRNA 24259 24366 0.997813 - . ID=CGI_10003844; scaffold40080 WUBlastX LINE_RTE-BovB 24259 24366 44 + . . scaffold40080 GLEAN mRNA 61612 61962 0.583639 - . ID=CGI_10003845; scaffold40080 WUBlastX LTR_Ngaro 61612 61962 90 - . . scaffold40080 GLEAN mRNA 61693 61962 0.583639 - . ID=CGI_10003845; scaffold40080 WUBlastX LTR_Ngaro 61693 61962 109 - . . scaffold40080 GLEAN mRNA 67611 67874 0.583639 - . ID=CGI_10003845; scaffold40080 WUBlastX DNA_Harbinger 67611 67874 124 - . . scaffold40080 GLEAN mRNA 67864 67983 0.583639 - . ID=CGI_10003845; scaffold40080 WUBlastX DNA_Harbinger 67864 67983 23 - . . scaffold40080 GLEAN mRNA 65541 66032 0.583639 - . ID=CGI_10003845; scaffold40080 WUBlastX DNA_Harbinger 65541 66032 393 + . . scaffold40088 GLEAN mRNA 45737 45810 0.990448 + . ID=CGI_10003848; scaffold40088 TRF Tandem_Repeat 45737 45810 55 + . . scaffold40088 GLEAN mRNA 47052 47151 0.990448 + . ID=CGI_10003848; scaffold40088 TRF Tandem_Repeat 47052 47151 200 + . . scaffold40088 GLEAN mRNA 47218 47260 0.990448 + . ID=CGI_10003848; scaffold40088 TRF Tandem_Repeat 47218 47260 77 + . . scaffold40088 GLEAN mRNA 56625 56762 1 + . ID=CGI_10003849; scaffold40088 TRF Tandem_Repeat 56625 56762 140 + . . scaffold40106 GLEAN mRNA 2316 2476 0.999949 - . ID=CGI_10003851; scaffold40106 TRF Tandem_Repeat 2316 2476 313 + . . scaffold40106 GLEAN mRNA 5699 5726 0.999949 - . ID=CGI_10003851; scaffold40106 TRF Tandem_Repeat 5699 5726 56 + . . scaffold40106 GLEAN mRNA 30725 30954 1 - . ID=CGI_10003854; scaffold40106 TRF Tandem_Repeat 30725 30954 336 + . . scaffold40106 GLEAN mRNA 30725 31313 1 - . ID=CGI_10003854; scaffold40106 TRF Tandem_Repeat 30725 31313 786 + . . scaffold40106 GLEAN mRNA 30725 31313 1 - . ID=CGI_10003854; scaffold40106 TRF Tandem_Repeat 30725 31313 786 + . . scaffold40106 GLEAN mRNA 30947 31313 1 - . ID=CGI_10003854; scaffold40106 TRF Tandem_Repeat 30947 31313 527 + . . scaffold40106 GLEAN mRNA 32947 33134 1 - . ID=CGI_10003854; scaffold40106 TRF Tandem_Repeat 32947 33134 152 + . . scaffold40106 GLEAN mRNA 33203 33237 1 - . ID=CGI_10003854; scaffold40106 TRF Tandem_Repeat 33203 33237 70 + . . scaffold40106 GLEAN mRNA 45347 45422 0.999465 - . ID=CGI_10003856; scaffold40106 TRF Tandem_Repeat 45347 45422 143 + . . scaffold40106 GLEAN mRNA 47973 48100 0.999465 - . ID=CGI_10003856; scaffold40106 TRF Tandem_Repeat 47973 48100 96 + . . scaffold40106 GLEAN mRNA 50855 51097 0.999465 - . ID=CGI_10003856; scaffold40106 WUBlastX LINE_RTE-X 50855 51097 54 - . . scaffold40106 GLEAN mRNA 51049 51279 0.999465 - . ID=CGI_10003856; scaffold40106 WUBlastX LINE_RTE-X 51049 51279 72 - . . scaffold40106 GLEAN mRNA 71751 71811 0.753117 - . ID=CGI_10003859; scaffold40106 TRF Tandem_Repeat 71751 71811 122 + . . scaffold40106 GLEAN mRNA 77210 77259 0.963048 + . ID=CGI_10003860; scaffold40106 TRF Tandem_Repeat 77210 77259 75 + . . scaffold40106 GLEAN mRNA 77641 77684 0.963048 + . ID=CGI_10003860; scaffold40106 TRF Tandem_Repeat 77641 77684 88 + . . scaffold1304 GLEAN mRNA 31062 31323 1 + . ID=CGI_10003862; scaffold1304 TRF Tandem_Repeat 31062 31323 226 + . . scaffold1304 GLEAN mRNA 31695 31904 1 + . ID=CGI_10003862; scaffold1304 WUBlastX LINE_L1 31695 31904 39 - . . scaffold1304 GLEAN mRNA 39140 39226 0.999356 - . ID=CGI_10003863; scaffold1304 TRF Tandem_Repeat 39140 39226 65 + . . scaffold1304 GLEAN mRNA 39388 39475 0.999356 - . ID=CGI_10003863; scaffold1304 TRF Tandem_Repeat 39388 39475 50 + . . scaffold1304 GLEAN mRNA 48378 48430 1 + . ID=CGI_10003864; scaffold1304 TRF Tandem_Repeat 48378 48430 90 + . . scaffold1304 GLEAN mRNA 69976 70029 0.814164 - . ID=CGI_10003866; scaffold1304 TRF Tandem_Repeat 69976 70029 108 + . . scaffold1304 GLEAN mRNA 74392 74422 0.814164 - . ID=CGI_10003866; scaffold1304 TRF Tandem_Repeat 74392 74422 62 + . . scaffold1304 GLEAN mRNA 74420 74517 0.814164 - . ID=CGI_10003866; scaffold1304 TRF Tandem_Repeat 74420 74517 160 + . . scaffold40104 GLEAN mRNA 24009 24043 0.364513 - . ID=CGI_10003867; scaffold40104 TRF Tandem_Repeat 24009 24043 54 + . . scaffold40104 GLEAN mRNA 26945 27007 0.364513 - . ID=CGI_10003867; scaffold40104 TRF Tandem_Repeat 26945 27007 117 + . . scaffold40104 GLEAN mRNA 35526 35669 0.364513 - . ID=CGI_10003867; scaffold40104 WUBlastX DNA_Kolobok-IS4 35526 35669 29 + . . scaffold40104 GLEAN mRNA 37897 38400 0.364513 - . ID=CGI_10003867; scaffold40104 WUBlastX DNA_Kolobok-IS4 37897 38400 168 - . . scaffold40104 GLEAN mRNA 35526 35732 0.364513 - . ID=CGI_10003867; scaffold40104 WUBlastX DNA_Kolobok-IS4 35526 35732 21 + . . scaffold40104 GLEAN mRNA 34871 35101 0.364513 - . ID=CGI_10003867; scaffold40104 WUBlastX DNA_IS4EU 34871 35101 22 + . . scaffold40104 GLEAN mRNA 35775 36605 0.364513 - . ID=CGI_10003867; scaffold40104 WUBlastX DNA_IS4EU 35775 36605 129 + . . scaffold40104 GLEAN mRNA 36123 36509 0.364513 - . ID=CGI_10003867; scaffold40104 WUBlastX DNA_IS4EU 36123 36509 172 + . . scaffold40104 GLEAN mRNA 37515 37913 0.364513 - . ID=CGI_10003867; scaffold40104 WUBlastX DNA_IS4EU 37515 37913 227 - . . scaffold40100 GLEAN mRNA 18391 18423 0.406399 - . ID=CGI_10003868; scaffold40100 TRF Tandem_Repeat 18391 18423 66 + . . scaffold40100 GLEAN mRNA 74225 74256 1 - . ID=CGI_10003871; scaffold40100 TRF Tandem_Repeat 74225 74256 55 + . . scaffold40100 GLEAN mRNA 76172 76203 1 - . ID=CGI_10003871; scaffold40100 TRF Tandem_Repeat 76172 76203 55 + . . scaffold40100 GLEAN mRNA 84837 84877 1 + . ID=CGI_10003872; scaffold40100 TRF Tandem_Repeat 84837 84877 82 + . . scaffold40154 GLEAN mRNA 27520 28065 0.434456 - . ID=CGI_10003875; scaffold40154 WUBlastX LTR_Ngaro 27520 28065 230 - . . scaffold40154 GLEAN mRNA 28046 28267 0.434456 - . ID=CGI_10003875; scaffold40154 WUBlastX LTR_Ngaro 28046 28267 146 - . . scaffold40154 GLEAN mRNA 27378 27485 0.434456 - . ID=CGI_10003875; scaffold40154 WUBlastX LTR_Ngaro 27378 27485 21 - . . scaffold40120 GLEAN mRNA 32595 32636 0.813469 - . ID=CGI_10003877; scaffold40120 TRF Tandem_Repeat 32595 32636 68 + . . scaffold40120 GLEAN mRNA 32596 32633 0.813469 - . ID=CGI_10003877; scaffold40120 TRF Tandem_Repeat 32596 32633 51 + . . scaffold40120 GLEAN mRNA 49242 49317 0.981641 - . ID=CGI_10003878; scaffold40120 TRF Tandem_Repeat 49242 49317 55 + . . scaffold40120 GLEAN mRNA 50397 51258 0.981641 - . ID=CGI_10003878; scaffold40120 TRF Tandem_Repeat 50397 51258 1118 + . . scaffold40120 GLEAN mRNA 61431 61520 0.999676 + . ID=CGI_10003879; scaffold40120 TRF Tandem_Repeat 61431 61520 80 + . . scaffold40120 GLEAN mRNA 63147 63176 0.999676 + . ID=CGI_10003879; scaffold40120 TRF Tandem_Repeat 63147 63176 60 + . . scaffold40120 GLEAN mRNA 69162 69512 0.999676 + . ID=CGI_10003879; scaffold40120 WUBlastX LINE_L1-Tx1 69162 69512 68 + . . scaffold40134 GLEAN mRNA 24116 24890 0.833725 - . ID=CGI_10003880; scaffold40134 TRF Tandem_Repeat 24116 24890 1062 + . . scaffold40134 GLEAN mRNA 30223 30259 0.922114 - . ID=CGI_10003881; scaffold40134 TRF Tandem_Repeat 30223 30259 65 + . . scaffold40134 GLEAN mRNA 29353 29472 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 29353 29472 69 + . . scaffold40134 GLEAN mRNA 27976 28320 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 27976 28320 99 + . . scaffold40134 GLEAN mRNA 29537 29767 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 29537 29767 83 + . . scaffold40134 GLEAN mRNA 27904 28236 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 27904 28236 32 + . . scaffold40134 GLEAN mRNA 28069 28320 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 28069 28320 106 + . . scaffold40134 GLEAN mRNA 29011 29136 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 29011 29136 116 + . . scaffold40134 GLEAN mRNA 29576 29746 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 29576 29746 123 + . . scaffold40134 GLEAN mRNA 29955 30140 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 29955 30140 31 + . . scaffold40134 GLEAN mRNA 36950 37096 0.665574 - . ID=CGI_10003882; scaffold40134 WUBlastX DNA_Harbinger 36950 37096 44 - . . scaffold40134 GLEAN mRNA 43743 43790 0.319501 + . ID=CGI_10003883; scaffold40134 TRF Tandem_Repeat 43743 43790 51 + . . scaffold40134 GLEAN mRNA 43743 43946 0.319501 + . ID=CGI_10003883; scaffold40134 TRF Tandem_Repeat 43743 43946 149 + . . scaffold40134 GLEAN mRNA 43870 43940 0.319501 + . ID=CGI_10003883; scaffold40134 TRF Tandem_Repeat 43870 43940 61 + . . scaffold40134 GLEAN mRNA 39631 39792 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX LINE_Penelope 39631 39792 45 + . . scaffold40134 GLEAN mRNA 39667 40224 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX LINE_Penelope 39667 40224 145 + . . scaffold40134 GLEAN mRNA 43116 43736 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX DNA_Maverick 43116 43736 389 - . . scaffold40134 GLEAN mRNA 44752 46563 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX DNA_Maverick 44752 46563 1492 - . . scaffold40134 GLEAN mRNA 39670 40131 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX LINE_Penelope 39670 40131 160 + . . scaffold40134 GLEAN mRNA 40993 42090 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX DNA_Maverick 40993 42090 657 - . . scaffold40134 GLEAN mRNA 42459 42632 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX LTR_Gypsy 42459 42632 21 - . . scaffold40134 GLEAN mRNA 50796 50885 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX DNA_Maverick 50796 50885 29 - . . scaffold40134 GLEAN mRNA 50876 51160 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX DNA_Maverick 50876 51160 179 - . . scaffold40134 GLEAN mRNA 50113 50799 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX DNA_Maverick 50113 50799 316 - . . scaffold40134 GLEAN mRNA 68146 68209 0.319501 + . ID=CGI_10003883; scaffold40134 TRF Tandem_Repeat 68146 68209 110 + . . scaffold40134 GLEAN mRNA 68378 68411 0.319501 + . ID=CGI_10003883; scaffold40134 TRF Tandem_Repeat 68378 68411 68 + . . scaffold40134 GLEAN mRNA 70083 70562 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX LINE_RTE-X 70083 70562 55 + . . scaffold40134 GLEAN mRNA 69800 69946 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX LINE_RTE-X 69800 69946 49 + . . scaffold40134 GLEAN mRNA 69442 69819 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX LINE_RTE-X 69442 69819 143 + . . scaffold40134 GLEAN mRNA 69975 70445 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX LINE_RTE-X 69975 70445 53 + . . scaffold40134 GLEAN mRNA 70053 70409 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX LINE_RTE-X 70053 70409 117 + . . scaffold40134 GLEAN mRNA 69860 69964 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX LINE_RTE-X 69860 69964 40 + . . scaffold40134 GLEAN mRNA 69439 69762 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX LINE_RTE-X 69439 69762 149 + . . scaffold40156 GLEAN mRNA 40272 40311 0.679275 - . ID=CGI_10003886; scaffold40156 TRF Tandem_Repeat 40272 40311 53 + . . scaffold40156 GLEAN mRNA 40677 40741 0.679275 - . ID=CGI_10003886; scaffold40156 TRF Tandem_Repeat 40677 40741 68 + . . scaffold40156 GLEAN mRNA 40657 40898 0.679275 - . ID=CGI_10003886; scaffold40156 TRF Tandem_Repeat 40657 40898 282 + . . scaffold40156 GLEAN mRNA 40660 40862 0.679275 - . ID=CGI_10003886; scaffold40156 TRF Tandem_Repeat 40660 40862 131 + . . scaffold40156 GLEAN mRNA 41721 41967 0.679275 - . ID=CGI_10003886; scaffold40156 TRF Tandem_Repeat 41721 41967 313 + . . scaffold40156 GLEAN mRNA 41742 41838 0.679275 - . ID=CGI_10003886; scaffold40156 TRF Tandem_Repeat 41742 41838 56 + . . scaffold40156 GLEAN mRNA 41887 42040 0.679275 - . ID=CGI_10003886; scaffold40156 TRF Tandem_Repeat 41887 42040 190 + . . scaffold40156 GLEAN mRNA 60963 61008 0.679275 - . ID=CGI_10003886; scaffold40156 TRF Tandem_Repeat 60963 61008 92 + . . scaffold819 GLEAN mRNA 44574 44602 0.447302 + . ID=CGI_10003889; scaffold819 TRF Tandem_Repeat 44574 44602 58 + . . scaffold819 GLEAN mRNA 49298 49343 0.447302 + . ID=CGI_10003889; scaffold819 TRF Tandem_Repeat 49298 49343 92 + . . scaffold819 GLEAN mRNA 53048 53130 0.447302 + . ID=CGI_10003889; scaffold819 TRF Tandem_Repeat 53048 53130 69 + . . scaffold819 GLEAN mRNA 53047 53122 0.447302 + . ID=CGI_10003889; scaffold819 TRF Tandem_Repeat 53047 53122 89 + . . scaffold819 GLEAN mRNA 49524 49775 0.447302 + . ID=CGI_10003889; scaffold819 WUBlastX LINE_L2 49524 49775 45 - . . scaffold819 GLEAN mRNA 73043 73085 0.949108 + . ID=CGI_10003890; scaffold819 TRF Tandem_Repeat 73043 73085 50 + . . scaffold819 GLEAN mRNA 73047 73089 0.949108 + . ID=CGI_10003890; scaffold819 TRF Tandem_Repeat 73047 73089 59 + . . scaffold1481 GLEAN mRNA 19276 19338 0.999949 - . ID=CGI_10003892; scaffold1481 TRF Tandem_Repeat 19276 19338 69 + . . scaffold1481 GLEAN mRNA 19272 19336 0.999949 - . ID=CGI_10003892; scaffold1481 TRF Tandem_Repeat 19272 19336 68 + . . scaffold1481 GLEAN mRNA 19272 19345 0.999949 - . ID=CGI_10003892; scaffold1481 TRF Tandem_Repeat 19272 19345 52 + . . scaffold1481 GLEAN mRNA 28368 28616 0.999949 - . ID=CGI_10003892; scaffold1481 WUBlastX LINE_L1-Tx1 28368 28616 27 + . . scaffold1481 GLEAN mRNA 28284 28559 0.999949 - . ID=CGI_10003892; scaffold1481 WUBlastX LINE_L1-Tx1 28284 28559 73 + . . scaffold1481 GLEAN mRNA 35836 35867 0.999949 - . ID=CGI_10003892; scaffold1481 TRF Tandem_Repeat 35836 35867 64 + . . scaffold1282 GLEAN mRNA 32042 32145 0.985891 - . ID=CGI_10003896; scaffold1282 TRF Tandem_Repeat 32042 32145 199 + . . scaffold1282 GLEAN mRNA 35752 35794 0.985891 - . ID=CGI_10003896; scaffold1282 TRF Tandem_Repeat 35752 35794 86 + . . scaffold1282 GLEAN mRNA 37183 37340 0.985891 - . ID=CGI_10003896; scaffold1282 TRF Tandem_Repeat 37183 37340 129 + . . scaffold1282 GLEAN mRNA 74841 75615 1 - . ID=CGI_10003897; scaffold1282 TRF Tandem_Repeat 74841 75615 1209 + . . scaffold40164 GLEAN mRNA 9810 9870 0.429437 - . ID=CGI_10003898; scaffold40164 TRF Tandem_Repeat 9810 9870 122 + . . scaffold40164 GLEAN mRNA 8043 8123 0.429437 - . ID=CGI_10003898; scaffold40164 WUBlastX LINE_L1 8043 8123 33 + . . scaffold40164 GLEAN mRNA 7681 7722 0.429437 - . ID=CGI_10003898; scaffold40164 WUBlastX LINE_L1-Tx1 7681 7722 27 + . . scaffold40164 GLEAN mRNA 8255 8404 0.429437 - . ID=CGI_10003898; scaffold40164 WUBlastX LINE_L1-Tx1 8255 8404 37 + . . scaffold40164 GLEAN mRNA 8058 8108 0.429437 - . ID=CGI_10003898; scaffold40164 WUBlastX LINE_L1-Tx1 8058 8108 34 + . . scaffold40164 GLEAN mRNA 8156 8401 0.429437 - . ID=CGI_10003898; scaffold40164 WUBlastX LINE_L1-Tx1 8156 8401 20 + . . scaffold40164 GLEAN mRNA 7751 7945 0.429437 - . ID=CGI_10003898; scaffold40164 WUBlastX LINE_L1-Tx1 7751 7945 63 + . . scaffold40164 GLEAN mRNA 7681 7743 0.429437 - . ID=CGI_10003898; scaffold40164 WUBlastX LINE_L1 7681 7743 24 + . . scaffold40164 GLEAN mRNA 7760 8008 0.429437 - . ID=CGI_10003898; scaffold40164 WUBlastX LINE_L1-Tx1 7760 8008 59 + . . scaffold40164 GLEAN mRNA 79462 79505 0.97257 + . ID=CGI_10003902; scaffold40164 TRF Tandem_Repeat 79462 79505 88 + . . scaffold40150 GLEAN mRNA 35932 36068 0.998505 - . ID=CGI_10003904; scaffold40150 TRF Tandem_Repeat 35932 36068 175 + . . scaffold40150 GLEAN mRNA 36969 37287 0.998505 - . ID=CGI_10003904; scaffold40150 TRF Tandem_Repeat 36969 37287 372 + . . scaffold40150 GLEAN mRNA 42940 43016 0.998505 - . ID=CGI_10003904; scaffold40150 TRF Tandem_Repeat 42940 43016 154 + . . scaffold1177 GLEAN mRNA 79526 80289 0.937811 + . ID=CGI_10003914; scaffold1177 TRF Tandem_Repeat 79526 80289 1438 + . . scaffold1177 GLEAN mRNA 81549 81883 0.937811 + . ID=CGI_10003914; scaffold1177 TRF Tandem_Repeat 81549 81883 598 + . . scaffold40114 GLEAN mRNA 15625 15677 0.997565 - . ID=CGI_10003918; scaffold40114 TRF Tandem_Repeat 15625 15677 56 + . . scaffold40114 GLEAN mRNA 23048 23106 0.999548 + . ID=CGI_10003919; scaffold40114 TRF Tandem_Repeat 23048 23106 109 + . . scaffold40114 GLEAN mRNA 28066 28092 0.999548 + . ID=CGI_10003919; scaffold40114 TRF Tandem_Repeat 28066 28092 54 + . . scaffold40114 GLEAN mRNA 21601 21744 0.999548 + . ID=CGI_10003919; scaffold40114 WUBlastX LINE_CR1-L2 21601 21744 57 + . . scaffold40114 GLEAN mRNA 21571 21756 0.999548 + . ID=CGI_10003919; scaffold40114 WUBlastX LINE_CR1-L2 21571 21756 37 + . . scaffold40114 GLEAN mRNA 21758 21955 0.999548 + . ID=CGI_10003919; scaffold40114 WUBlastX LINE_L2 21758 21955 81 + . . scaffold40114 GLEAN mRNA 39037 39093 0.999949 - . ID=CGI_10003920; scaffold40114 TRF Tandem_Repeat 39037 39093 114 + . . scaffold40114 GLEAN mRNA 47690 47744 0.989059 + . ID=CGI_10003921; scaffold40114 TRF Tandem_Repeat 47690 47744 110 + . . scaffold40114 GLEAN mRNA 63502 63576 0.993477 - . ID=CGI_10003922; scaffold40114 TRF Tandem_Repeat 63502 63576 132 + . . scaffold40186 GLEAN mRNA 24810 25448 0.486093 - . ID=CGI_10003927; scaffold40186 WUBlastX DNA_TcMar-Tc1 24810 25448 59 - . . scaffold40186 GLEAN mRNA 24493 24948 0.486093 - . ID=CGI_10003927; scaffold40186 WUBlastX DNA_TcMar-Tc1 24493 24948 240 - . . scaffold40186 GLEAN mRNA 24891 25229 0.486093 - . ID=CGI_10003927; scaffold40186 WUBlastX DNA_TcMar-Tc1 24891 25229 122 - . . scaffold40186 GLEAN mRNA 22401 23225 0.486093 - . ID=CGI_10003927; scaffold40186 WUBlastX LINE_RTE-BovB 22401 23225 56 + . . scaffold40186 GLEAN mRNA 72000 72055 0.988625 + . ID=CGI_10003928; scaffold40186 TRF Tandem_Repeat 72000 72055 112 + . . scaffold40172 GLEAN mRNA 12001 12177 0.895984 + . ID=CGI_10003930; scaffold40172 WUBlastX LINE_L1-Tx1 12001 12177 45 + . . scaffold40172 GLEAN mRNA 12176 12919 0.895984 + . ID=CGI_10003930; scaffold40172 WUBlastX LINE_L1-Tx1 12176 12919 230 + . . scaffold40172 GLEAN mRNA 12951 13388 0.895984 + . ID=CGI_10003930; scaffold40172 WUBlastX LINE_L1-Tx1 12951 13388 73 + . . scaffold40172 GLEAN mRNA 12927 13469 0.895984 + . ID=CGI_10003930; scaffold40172 WUBlastX LINE_L1-Tx1 12927 13469 58 + . . scaffold40172 GLEAN mRNA 37076 37145 0.895984 + . ID=CGI_10003930; scaffold40172 TRF Tandem_Repeat 37076 37145 131 + . . scaffold40172 GLEAN mRNA 37383 37520 0.895984 + . ID=CGI_10003930; scaffold40172 WUBlastX LINE_L1 37383 37520 50 - . . scaffold40172 GLEAN mRNA 37356 37520 0.895984 + . ID=CGI_10003930; scaffold40172 WUBlastX LINE_L1-Tx1 37356 37520 31 - . . scaffold40224 GLEAN mRNA 50939 50986 0.986337 - . ID=CGI_10003933; scaffold40224 TRF Tandem_Repeat 50939 50986 96 + . . scaffold40224 GLEAN mRNA 53009 53458 0.986337 - . ID=CGI_10003933; scaffold40224 TRF Tandem_Repeat 53009 53458 497 + . . scaffold40182 GLEAN mRNA 23696 23731 0.492081 + . ID=CGI_10003936; scaffold40182 TRF Tandem_Repeat 23696 23731 63 + . . scaffold40182 GLEAN mRNA 18910 19005 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_I 18910 19005 41 + . . scaffold40182 GLEAN mRNA 19805 19942 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_RTE-X 19805 19942 67 + . . scaffold40182 GLEAN mRNA 17636 17770 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_L2 17636 17770 22 + . . scaffold40182 GLEAN mRNA 18582 18830 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_RTE-BovB 18582 18830 36 + . . scaffold40182 GLEAN mRNA 17597 17698 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_L2 17597 17698 20 + . . scaffold40182 GLEAN mRNA 18675 18797 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_L2 18675 18797 39 + . . scaffold40182 GLEAN mRNA 18937 19143 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_RTE-X 18937 19143 29 + . . scaffold40182 GLEAN mRNA 19739 19942 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_RTE-X 19739 19942 49 + . . scaffold40182 GLEAN mRNA 18753 18830 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_RTE-X 18753 18830 57 + . . scaffold40182 GLEAN mRNA 17636 17698 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_Jockey 17636 17698 26 + . . scaffold40182 GLEAN mRNA 18696 18818 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_Jockey 18696 18818 41 + . . scaffold40182 GLEAN mRNA 19715 20029 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_CR1 19715 20029 38 + . . scaffold40182 GLEAN mRNA 50937 51086 0.999351 + . ID=CGI_10003941; scaffold40182 TRF Tandem_Repeat 50937 51086 218 + . . scaffold40182 GLEAN mRNA 68461 68514 0.514221 + . ID=CGI_10003943; scaffold40182 TRF Tandem_Repeat 68461 68514 108 + . . scaffold40182 GLEAN mRNA 70389 70430 0.514221 + . ID=CGI_10003943; scaffold40182 TRF Tandem_Repeat 70389 70430 59 + . . scaffold40182 GLEAN mRNA 71628 72628 0.514221 + . ID=CGI_10003943; scaffold40182 TRF Tandem_Repeat 71628 72628 1289 + . . scaffold40182 GLEAN mRNA 80262 80366 0.514221 + . ID=CGI_10003943; scaffold40182 TRF Tandem_Repeat 80262 80366 74 + . . scaffold40182 GLEAN mRNA 80307 80414 0.514221 + . ID=CGI_10003943; scaffold40182 TRF Tandem_Repeat 80307 80414 67 + . . scaffold40194 GLEAN mRNA 6682 6812 0.999153 + . ID=CGI_10003949; scaffold40194 TRF Tandem_Repeat 6682 6812 146 + . . scaffold40194 GLEAN mRNA 6682 6812 0.999153 + . ID=CGI_10003949; scaffold40194 TRF Tandem_Repeat 6682 6812 178 + . . scaffold40194 GLEAN mRNA 7057 7091 0.999153 + . ID=CGI_10003949; scaffold40194 TRF Tandem_Repeat 7057 7091 70 + . . scaffold40194 GLEAN mRNA 7999 8036 0.999153 + . ID=CGI_10003949; scaffold40194 TRF Tandem_Repeat 7999 8036 76 + . . scaffold40194 GLEAN mRNA 8281 8406 0.999153 + . ID=CGI_10003949; scaffold40194 TRF Tandem_Repeat 8281 8406 136 + . . scaffold40194 GLEAN mRNA 8281 8395 0.999153 + . ID=CGI_10003949; scaffold40194 TRF Tandem_Repeat 8281 8395 167 + . . scaffold40194 GLEAN mRNA 13195 13424 0.999153 + . ID=CGI_10003949; scaffold40194 TRF Tandem_Repeat 13195 13424 334 + . . scaffold40194 GLEAN mRNA 13195 13424 0.999351 - . ID=CGI_10003950; scaffold40194 TRF Tandem_Repeat 13195 13424 334 + . . scaffold40208 GLEAN mRNA 35986 36675 0.999064 + . ID=CGI_10003954; scaffold40208 TRF Tandem_Repeat 35986 36675 1240 + . . scaffold40208 GLEAN mRNA 36680 36713 0.999064 + . ID=CGI_10003954; scaffold40208 TRF Tandem_Repeat 36680 36713 50 + . . scaffold40208 GLEAN mRNA 36683 36726 0.999064 + . ID=CGI_10003954; scaffold40208 TRF Tandem_Repeat 36683 36726 70 + . . scaffold40208 GLEAN mRNA 42533 42846 0.999064 + . ID=CGI_10003954; scaffold40208 TRF Tandem_Repeat 42533 42846 154 + . . scaffold40208 GLEAN mRNA 47722 47760 0.999064 + . ID=CGI_10003954; scaffold40208 TRF Tandem_Repeat 47722 47760 78 + . . scaffold40208 GLEAN mRNA 35512 35775 0.999064 + . ID=CGI_10003954; scaffold40208 WUBlastX RC_Helitron 35512 35775 35 + . . scaffold40208 GLEAN mRNA 36776 37969 0.999064 + . ID=CGI_10003954; scaffold40208 WUBlastX RC_Helitron 36776 37969 814 + . . scaffold40208 GLEAN mRNA 37962 38708 0.999064 + . ID=CGI_10003954; scaffold40208 WUBlastX RC_Helitron 37962 38708 156 + . . scaffold40208 GLEAN mRNA 34978 35715 0.999064 + . ID=CGI_10003954; scaffold40208 WUBlastX RC_Helitron 34978 35715 275 + . . scaffold40208 GLEAN mRNA 32816 33775 0.999064 + . ID=CGI_10003954; scaffold40208 WUBlastX RC_Helitron 32816 33775 573 + . . scaffold40208 GLEAN mRNA 33775 35592 0.999064 + . ID=CGI_10003954; scaffold40208 WUBlastX RC_Helitron 33775 35592 1020 + . . scaffold40208 GLEAN mRNA 56581 56634 0.999064 + . ID=CGI_10003954; scaffold40208 TRF Tandem_Repeat 56581 56634 101 + . . scaffold40208 GLEAN mRNA 60456 60484 0.999064 + . ID=CGI_10003954; scaffold40208 TRF Tandem_Repeat 60456 60484 58 + . . scaffold40208 GLEAN mRNA 61227 61331 0.999064 + . ID=CGI_10003954; scaffold40208 TRF Tandem_Repeat 61227 61331 111 + . . scaffold40208 GLEAN mRNA 78330 78371 0.842413 + . ID=CGI_10003956; scaffold40208 TRF Tandem_Repeat 78330 78371 84 + . . scaffold40208 GLEAN mRNA 84498 85040 0.842413 + . ID=CGI_10003956; scaffold40208 WUBlastX LINE_RTE-X 84498 85040 99 + . . scaffold40208 GLEAN mRNA 83545 83847 0.842413 + . ID=CGI_10003956; scaffold40208 WUBlastX LINE_L1-Tx1 83545 83847 36 + . . scaffold40208 GLEAN mRNA 82918 83280 0.842413 + . ID=CGI_10003956; scaffold40208 WUBlastX LINE_RTE-X 82918 83280 46 + . . scaffold40208 GLEAN mRNA 84495 84935 0.842413 + . ID=CGI_10003956; scaffold40208 WUBlastX LINE_RTE-X 84495 84935 151 + . . scaffold40208 GLEAN mRNA 85102 85359 0.842413 + . ID=CGI_10003956; scaffold40208 WUBlastX LINE_RTE-X 85102 85359 114 + . . scaffold40216 GLEAN mRNA 20987 21220 0.998157 - . ID=CGI_10003965; scaffold40216 WUBlastX LTR_Gypsy 20987 21220 58 - . . scaffold40216 GLEAN mRNA 20957 21187 0.998157 - . ID=CGI_10003965; scaffold40216 WUBlastX LTR_Gypsy 20873 21187 32 - . . scaffold40234 GLEAN mRNA 2023 3059 0.796204 + . ID=CGI_10003966; scaffold40234 TRF Tandem_Repeat 2023 3059 1230 + . . scaffold40234 GLEAN mRNA 6558 6598 0.796204 + . ID=CGI_10003966; scaffold40234 TRF Tandem_Repeat 6558 6598 82 + . . scaffold40234 GLEAN mRNA 11727 11758 0.796204 + . ID=CGI_10003966; scaffold40234 TRF Tandem_Repeat 11727 11758 64 + . . scaffold40234 GLEAN mRNA 12130 12169 0.796204 + . ID=CGI_10003966; scaffold40234 TRF Tandem_Repeat 12130 12169 80 + . . scaffold40234 GLEAN mRNA 28252 28794 0.997837 + . ID=CGI_10003967; scaffold40234 TRF Tandem_Repeat 28252 28794 743 + . . scaffold40234 GLEAN mRNA 30625 30677 0.997837 + . ID=CGI_10003967; scaffold40234 TRF Tandem_Repeat 30625 30677 106 + . . scaffold40234 GLEAN mRNA 44665 44920 0.999351 - . ID=CGI_10003969; scaffold40234 TRF Tandem_Repeat 44665 44920 246 + . . scaffold40234 GLEAN mRNA 54908 54942 1 + . ID=CGI_10003970; scaffold40234 TRF Tandem_Repeat 54908 54942 70 + . . scaffold40234 GLEAN mRNA 54908 54942 0.786854 - . ID=CGI_10003971; scaffold40234 TRF Tandem_Repeat 54908 54942 70 + . . scaffold40234 GLEAN mRNA 64342 64391 0.786854 - . ID=CGI_10003971; scaffold40234 TRF Tandem_Repeat 64342 64391 100 + . . scaffold40234 GLEAN mRNA 65479 65531 0.786854 - . ID=CGI_10003971; scaffold40234 TRF Tandem_Repeat 65479 65531 106 + . . scaffold40234 GLEAN mRNA 74283 74352 1 + . ID=CGI_10003972; scaffold40234 TRF Tandem_Repeat 74283 74352 61 + . . scaffold40234 GLEAN mRNA 74295 74433 1 + . ID=CGI_10003972; scaffold40234 TRF Tandem_Repeat 74295 74433 107 + . . scaffold40234 GLEAN mRNA 74304 74424 1 + . ID=CGI_10003972; scaffold40234 TRF Tandem_Repeat 74304 74424 79 + . . scaffold1814 GLEAN mRNA 19763 19822 0.753154 - . ID=CGI_10003975; scaffold1814 TRF Tandem_Repeat 19763 19822 57 + . . scaffold1814 GLEAN mRNA 18517 19611 0.753154 - . ID=CGI_10003975; scaffold1814 WUBlastX LINE_RTE-X 18517 19611 370 + . . scaffold1375 GLEAN mRNA 37318 37362 0.937918 - . ID=CGI_10003982; scaffold1375 TRF Tandem_Repeat 37318 37362 90 + . . scaffold1375 GLEAN mRNA 37957 38074 0.937918 - . ID=CGI_10003982; scaffold1375 TRF Tandem_Repeat 37957 38074 236 + . . scaffold1375 GLEAN mRNA 43899 44586 1 + . ID=CGI_10003983; scaffold1375 TRF Tandem_Repeat 43899 44586 1054 + . . scaffold1375 GLEAN mRNA 45062 45353 1 + . ID=CGI_10003983; scaffold1375 TRF Tandem_Repeat 45062 45353 344 + . . scaffold1375 GLEAN mRNA 64259 65005 1 + . ID=CGI_10003984; scaffold1375 TRF Tandem_Repeat 64259 65005 984 + . . scaffold1375 GLEAN mRNA 65900 66113 1 + . ID=CGI_10003984; scaffold1375 TRF Tandem_Repeat 65900 66113 74 + . . scaffold40246 GLEAN mRNA 12660 12750 0.614733 - . ID=CGI_10003985; scaffold40246 TRF Tandem_Repeat 12660 12750 78 + . . scaffold40246 GLEAN mRNA 26956 27045 0.997233 - . ID=CGI_10003986; scaffold40246 WUBlastX DNA_hAT-Tip100 26956 27165 81 - . . scaffold40246 GLEAN mRNA 26073 26390 0.997233 - . ID=CGI_10003986; scaffold40246 WUBlastX DNA_hAT-Tip100 26073 26390 87 - . . scaffold40246 GLEAN mRNA 26506 26838 0.997233 - . ID=CGI_10003986; scaffold40246 WUBlastX DNA_hAT-Tip100 26506 26838 32 - . . scaffold40246 GLEAN mRNA 26019 26282 0.997233 - . ID=CGI_10003986; scaffold40246 WUBlastX DNA_hAT-Tip100 26019 26282 93 - . . scaffold40246 GLEAN mRNA 41763 41873 0.999273 + . ID=CGI_10003987; scaffold40246 TRF Tandem_Repeat 41763 41873 168 + . . scaffold40246 GLEAN mRNA 58426 59707 0.999351 - . ID=CGI_10003989; scaffold40246 TRF Tandem_Repeat 58426 59707 1741 + . . scaffold40246 GLEAN mRNA 60651 60762 0.999351 - . ID=CGI_10003989; scaffold40246 TRF Tandem_Repeat 60651 60762 165 + . . scaffold40246 GLEAN mRNA 63541 63668 0.999351 - . ID=CGI_10003989; scaffold40246 TRF Tandem_Repeat 63541 63668 229 + . . scaffold40246 GLEAN mRNA 70621 70654 0.999351 - . ID=CGI_10003989; scaffold40246 TRF Tandem_Repeat 70621 70654 68 + . . scaffold40246 GLEAN mRNA 70621 70654 0.738332 + . ID=CGI_10003990; scaffold40246 TRF Tandem_Repeat 70621 70654 68 + . . scaffold40246 GLEAN mRNA 74731 74765 0.412705 - . ID=CGI_10003991; scaffold40246 TRF Tandem_Repeat 74731 74765 56 + . . scaffold40270 GLEAN mRNA 41552 41599 0.234076 - . ID=CGI_10003993; scaffold40270 TRF Tandem_Repeat 41552 41599 55 + . . scaffold40270 GLEAN mRNA 56778 56804 0.988746 - . ID=CGI_10003994; scaffold40270 TRF Tandem_Repeat 56778 56804 54 + . . scaffold40270 GLEAN mRNA 70026 70336 0.988746 - . ID=CGI_10003994; scaffold40270 TRF Tandem_Repeat 70026 70336 132 + . . scaffold40270 GLEAN mRNA 70026 70336 0.988746 - . ID=CGI_10003994; scaffold40270 TRF Tandem_Repeat 70026 70336 132 + . . scaffold40282 GLEAN mRNA 31876 31902 1 + . ID=CGI_10004001; scaffold40282 TRF Tandem_Repeat 31876 31902 54 + . . scaffold40282 GLEAN mRNA 31939 32229 1 + . ID=CGI_10004001; scaffold40282 WUBlastX LTR_Gypsy 31939 32229 84 + . . scaffold40282 GLEAN mRNA 30930 30983 1 + . ID=CGI_10004001; scaffold40282 WUBlastX LTR_Gypsy 30930 30983 39 + . . scaffold40282 GLEAN mRNA 30547 30954 1 + . ID=CGI_10004001; scaffold40282 WUBlastX LTR_Gypsy 30547 30954 115 + . . scaffold40282 GLEAN mRNA 59396 59462 0.539379 + . ID=CGI_10004002; scaffold40282 TRF Tandem_Repeat 59396 59462 116 + . . scaffold40282 GLEAN mRNA 75595 76158 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 75595 76158 154 - . . scaffold40282 GLEAN mRNA 75953 76456 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 75953 76456 27 - . . scaffold40282 GLEAN mRNA 74222 75085 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 74222 75085 233 - . . scaffold40282 GLEAN mRNA 77290 77700 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 77290 77700 44 - . . scaffold40282 GLEAN mRNA 73847 74188 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 73847 74188 100 - . . scaffold40282 GLEAN mRNA 73114 73437 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 73114 73437 186 - . . scaffold40282 GLEAN mRNA 75712 76014 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy-Gmr1 75712 76014 248 - . . scaffold40282 GLEAN mRNA 73192 73506 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 73192 73506 163 - . . scaffold40282 GLEAN mRNA 76310 77272 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 76310 77272 135 - . . scaffold40282 GLEAN mRNA 77290 77616 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 77290 77616 70 - . . scaffold40282 GLEAN mRNA 76007 76216 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 76007 76216 46 - . . scaffold40282 GLEAN mRNA 73961 74791 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 73961 74791 222 - . . scaffold40282 GLEAN mRNA 73216 73563 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 73216 73563 108 - . . scaffold40282 GLEAN mRNA 74180 74785 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 74180 74785 240 - . . scaffold40282 GLEAN mRNA 75081 75707 0.539379 + . ID=CGI_10004002; scaffold40282 WUBlastX LTR_Gypsy 75081 75707 447 - . . scaffold40254 GLEAN mRNA 2210 2235 0.999221 - . ID=CGI_10004003; scaffold40254 TRF Tandem_Repeat 2210 2235 52 + . . scaffold40254 GLEAN mRNA 11496 11552 0.999957 - . ID=CGI_10004004; scaffold40254 TRF Tandem_Repeat 11496 11552 114 + . . scaffold40254 GLEAN mRNA 12885 13619 0.999957 - . ID=CGI_10004004; scaffold40254 TRF Tandem_Repeat 12885 13619 1093 + . . scaffold40254 GLEAN mRNA 20678 20721 0.999906 - . ID=CGI_10004005; scaffold40254 TRF Tandem_Repeat 20678 20721 88 + . . scaffold40254 GLEAN mRNA 21588 21631 0.999906 - . ID=CGI_10004005; scaffold40254 TRF Tandem_Repeat 21588 21631 88 + . . scaffold40254 GLEAN mRNA 53205 53248 0.145016 + . ID=CGI_10004007; scaffold40254 TRF Tandem_Repeat 53205 53248 79 + . . scaffold40254 GLEAN mRNA 55120 55429 0.145016 + . ID=CGI_10004007; scaffold40254 TRF Tandem_Repeat 55120 55429 156 + . . scaffold40254 GLEAN mRNA 55121 55412 0.145016 + . ID=CGI_10004007; scaffold40254 TRF Tandem_Repeat 55121 55412 265 + . . scaffold40254 GLEAN mRNA 55120 55440 0.145016 + . ID=CGI_10004007; scaffold40254 TRF Tandem_Repeat 55120 55440 143 + . . scaffold1251 GLEAN mRNA 26976 27015 0.997488 - . ID=CGI_10004009; scaffold1251 TRF Tandem_Repeat 26976 27015 80 + . . scaffold1251 GLEAN mRNA 49405 49489 0.645112 - . ID=CGI_10004010; scaffold1251 TRF Tandem_Repeat 49405 49489 170 + . . scaffold1251 GLEAN mRNA 80793 81527 1 - . ID=CGI_10004011; scaffold1251 TRF Tandem_Repeat 80793 81527 725 + . . scaffold1251 GLEAN mRNA 84675 84738 1 - . ID=CGI_10004011; scaffold1251 TRF Tandem_Repeat 84675 84738 92 + . . scaffold1251 GLEAN mRNA 84666 84729 1 - . ID=CGI_10004011; scaffold1251 TRF Tandem_Repeat 84666 84729 92 + . . scaffold40264 GLEAN mRNA 13632 13699 0.512371 + . ID=CGI_10004012; scaffold40264 TRF Tandem_Repeat 13632 13699 91 + . . scaffold40264 GLEAN mRNA 19175 19221 0.512371 + . ID=CGI_10004012; scaffold40264 TRF Tandem_Repeat 19175 19221 76 + . . scaffold40264 GLEAN mRNA 38455 40999 0.512371 + . ID=CGI_10004012; scaffold40264 TRF Tandem_Repeat 38455 40999 3779 + . . scaffold40264 GLEAN mRNA 49437 49472 0.512371 + . ID=CGI_10004012; scaffold40264 WUBlastX LINE_L1 49437 49472 20 - . . scaffold40264 GLEAN mRNA 51777 52571 0.512371 + . ID=CGI_10004012; scaffold40264 WUBlastX LINE_Proto2 51777 52571 29 - . . scaffold40264 GLEAN mRNA 51354 52400 0.512371 + . ID=CGI_10004012; scaffold40264 WUBlastX LINE_Proto2 51354 52400 157 - . . scaffold40264 GLEAN mRNA 49754 51316 0.512371 + . ID=CGI_10004012; scaffold40264 WUBlastX LINE_RTE-X 49754 51316 413 - . . scaffold40264 GLEAN mRNA 49499 51058 0.512371 + . ID=CGI_10004012; scaffold40264 WUBlastX LINE_CR1 49499 51058 201 - . . scaffold40264 GLEAN mRNA 49718 51625 0.512371 + . ID=CGI_10004012; scaffold40264 WUBlastX LINE_L2 49718 51625 176 - . . scaffold40264 GLEAN mRNA 70895 70939 0.999545 + . ID=CGI_10004014; scaffold40264 TRF Tandem_Repeat 70895 70939 90 + . . scaffold40264 GLEAN mRNA 71241 71479 0.999545 + . ID=CGI_10004014; scaffold40264 TRF Tandem_Repeat 71241 71479 253 + . . scaffold40290 GLEAN mRNA 7655 8518 1 + . ID=CGI_10004018; scaffold40290 WUBlastX LINE_RTE-X 7655 8518 202 - . . scaffold40290 GLEAN mRNA 8485 8538 1 + . ID=CGI_10004018; scaffold40290 WUBlastX LINE_RTE-X 8485 8538 28 - . . scaffold1692 GLEAN mRNA 6650 7005 1 - . ID=CGI_10004024; scaffold1692 TRF Tandem_Repeat 6650 7281 976 + . . scaffold1692 GLEAN mRNA 46819 46869 0.152045 + . ID=CGI_10004025; scaffold1692 TRF Tandem_Repeat 46819 46869 75 + . . scaffold1692 GLEAN mRNA 47014 47059 0.152045 + . ID=CGI_10004025; scaffold1692 TRF Tandem_Repeat 47014 47059 92 + . . scaffold1692 GLEAN mRNA 57238 57343 0.152045 + . ID=CGI_10004025; scaffold1692 TRF Tandem_Repeat 57238 57343 140 + . . scaffold1692 GLEAN mRNA 52934 53344 0.152045 + . ID=CGI_10004025; scaffold1692 WUBlastX LINE_L1-Tx1 52934 53344 104 - . . scaffold1692 GLEAN mRNA 52510 52650 0.152045 + . ID=CGI_10004025; scaffold1692 WUBlastX LINE_L1-Tx1 52510 52650 36 - . . scaffold1692 GLEAN mRNA 52677 53060 0.152045 + . ID=CGI_10004025; scaffold1692 WUBlastX LINE_L1-Tx1 52677 53060 90 - . . scaffold1692 GLEAN mRNA 52955 53461 0.152045 + . ID=CGI_10004025; scaffold1692 WUBlastX LINE_L1-Tx1 52955 53461 58 - . . scaffold1692 GLEAN mRNA 57238 57343 0.651135 - . ID=CGI_10004026; scaffold1692 TRF Tandem_Repeat 57238 57343 140 + . . scaffold1692 GLEAN mRNA 67433 67474 0.651135 - . ID=CGI_10004026; scaffold1692 TRF Tandem_Repeat 67433 67474 84 + . . scaffold40406 GLEAN mRNA 20211 20279 0.99628 - . ID=CGI_10004031; scaffold40406 TRF Tandem_Repeat 20211 20279 93 + . . scaffold40406 GLEAN mRNA 41848 41901 0.593391 - . ID=CGI_10004032; scaffold40406 TRF Tandem_Repeat 41848 41901 108 + . . scaffold1357 GLEAN mRNA 36445 36526 0.729532 - . ID=CGI_10004035; scaffold1357 TRF Tandem_Repeat 36445 36526 58 + . . scaffold1357 GLEAN mRNA 36445 36639 0.729532 - . ID=CGI_10004035; scaffold1357 TRF Tandem_Repeat 36445 36639 53 + . . scaffold1357 GLEAN mRNA 74476 74534 0.374546 - . ID=CGI_10004037; scaffold1357 TRF Tandem_Repeat 74476 74534 118 + . . scaffold1357 GLEAN mRNA 79432 79560 0.978973 - . ID=CGI_10004038; scaffold1357 WUBlastX DNA_Maverick 79432 79560 51 - . . scaffold1357 GLEAN mRNA 79560 80312 0.978973 - . ID=CGI_10004038; scaffold1357 WUBlastX DNA_Maverick 79560 80312 384 - . . scaffold40346 GLEAN mRNA 28083 28115 0.99961 - . ID=CGI_10004041; scaffold40346 TRF Tandem_Repeat 28083 28115 57 + . . scaffold40346 GLEAN mRNA 28648 28709 0.99961 - . ID=CGI_10004041; scaffold40346 TRF Tandem_Repeat 28648 28709 70 + . . scaffold40346 GLEAN mRNA 23940 24869 0.99961 - . ID=CGI_10004041; scaffold40346 WUBlastX DNA_TcMar-Tc1 23940 24869 258 - . . scaffold40346 GLEAN mRNA 25241 25453 0.99961 - . ID=CGI_10004041; scaffold40346 WUBlastX LINE_L1-Tx1 25241 25453 40 + . . scaffold40346 GLEAN mRNA 24273 25001 0.99961 - . ID=CGI_10004041; scaffold40346 WUBlastX DNA_TcMar-Tc1 24273 25001 114 - . . scaffold40368 GLEAN mRNA 6062 6126 0.999993 + . ID=CGI_10004043; scaffold40368 TRF Tandem_Repeat 6062 6126 130 + . . scaffold40368 GLEAN mRNA 8934 9048 0.999993 + . ID=CGI_10004043; scaffold40368 TRF Tandem_Repeat 8934 9048 230 + . . scaffold40368 GLEAN mRNA 5300 5653 0.999993 + . ID=CGI_10004043; scaffold40368 WUBlastX LINE_Penelope 5300 5653 126 - . . scaffold91 GLEAN mRNA 9966 10002 0.90295 - . ID=CGI_10004046; scaffold91 TRF Tandem_Repeat 9966 10002 74 + . . scaffold91 GLEAN mRNA 14162 14432 0.90295 - . ID=CGI_10004046; scaffold91 TRF Tandem_Repeat 14162 14432 335 + . . scaffold91 GLEAN mRNA 14193 14433 0.90295 - . ID=CGI_10004046; scaffold91 TRF Tandem_Repeat 14193 14433 412 + . . scaffold40390 GLEAN mRNA 33320 33345 0.999992 + . ID=CGI_10004050; scaffold40390 TRF Tandem_Repeat 33320 33345 52 + . . scaffold40390 GLEAN mRNA 33609 33644 0.999992 + . ID=CGI_10004050; scaffold40390 TRF Tandem_Repeat 33609 33644 72 + . . scaffold40390 GLEAN mRNA 48526 48657 0.897316 + . ID=CGI_10004052; scaffold40390 WUBlastX LTR_Gypsy 48526 48657 39 + . . scaffold40390 GLEAN mRNA 64939 64979 0.991246 - . ID=CGI_10004053; scaffold40390 TRF Tandem_Repeat 64939 64979 82 + . . scaffold1559 GLEAN mRNA 18197 18939 1 - . ID=CGI_10004059; scaffold1559 TRF Tandem_Repeat 18197 18939 1037 + . . scaffold1559 GLEAN mRNA 38772 39241 0.65484 + . ID=CGI_10004060; scaffold1559 TRF Tandem_Repeat 38772 39241 841 + . . scaffold1559 GLEAN mRNA 42747 42780 0.65484 + . ID=CGI_10004060; scaffold1559 TRF Tandem_Repeat 42747 42780 68 + . . scaffold40396 GLEAN mRNA 13792 13847 0.990545 - . ID=CGI_10004066; scaffold40396 TRF Tandem_Repeat 13792 13847 112 + . . scaffold40396 GLEAN mRNA 2146 2340 0.990545 - . ID=CGI_10004066; scaffold40396 WUBlastX LINE_Penelope 2146 2340 29 - . . scaffold40396 GLEAN mRNA 22651 22742 0.990545 - . ID=CGI_10004066; scaffold40396 TRF Tandem_Repeat 22651 22742 116 + . . scaffold40380 GLEAN mRNA 1917 1960 0.977422 + . ID=CGI_10004069; scaffold40380 TRF Tandem_Repeat 1917 1960 79 + . . scaffold40380 GLEAN mRNA 4206 4237 0.977422 + . ID=CGI_10004069; scaffold40380 TRF Tandem_Repeat 4206 4237 55 + . . scaffold40380 GLEAN mRNA 4268 5045 0.977422 + . ID=CGI_10004069; scaffold40380 TRF Tandem_Repeat 4268 5045 1130 + . . scaffold40380 GLEAN mRNA 9802 9845 0.977422 + . ID=CGI_10004069; scaffold40380 TRF Tandem_Repeat 9802 9845 88 + . . scaffold40380 GLEAN mRNA 20550 21054 0.977422 + . ID=CGI_10004069; scaffold40380 TRF Tandem_Repeat 20550 21054 326 + . . scaffold40380 GLEAN mRNA 20940 21127 0.977422 + . ID=CGI_10004069; scaffold40380 TRF Tandem_Repeat 20940 21127 187 + . . scaffold40380 GLEAN mRNA 20547 20847 0.977422 + . ID=CGI_10004069; scaffold40380 TRF Tandem_Repeat 20547 20847 239 + . . scaffold40380 GLEAN mRNA 33721 34164 0.977422 + . ID=CGI_10004069; scaffold40380 TRF Tandem_Repeat 33721 34164 395 + . . scaffold40380 GLEAN mRNA 33692 34193 0.977422 + . ID=CGI_10004069; scaffold40380 TRF Tandem_Repeat 33692 34193 468 + . . scaffold40380 GLEAN mRNA 34024 34239 0.977422 + . ID=CGI_10004069; scaffold40380 TRF Tandem_Repeat 34024 34239 94 + . . scaffold40380 GLEAN mRNA 33956 34277 0.977422 + . ID=CGI_10004069; scaffold40380 TRF Tandem_Repeat 33956 34277 205 + . . scaffold40380 GLEAN mRNA 35022 35155 0.977422 + . ID=CGI_10004069; scaffold40380 TRF Tandem_Repeat 35022 35155 110 + . . scaffold40380 GLEAN mRNA 36201 36299 0.977422 + . ID=CGI_10004069; scaffold40380 TRF Tandem_Repeat 36201 36299 90 + . . scaffold40380 GLEAN mRNA 84626 84742 1 - . ID=CGI_10004072; scaffold40380 TRF Tandem_Repeat 84626 84742 83 + . . scaffold40388 GLEAN mRNA 16936 17109 0.999676 - . ID=CGI_10004075; scaffold40388 WUBlastX LTR_DIRS 16936 17109 21 - . . scaffold40388 GLEAN mRNA 24822 24876 0.354772 - . ID=CGI_10004076; scaffold40388 TRF Tandem_Repeat 24822 24876 110 + . . scaffold40388 GLEAN mRNA 26882 26932 0.354772 - . ID=CGI_10004076; scaffold40388 TRF Tandem_Repeat 26882 26932 102 + . . scaffold40388 GLEAN mRNA 29546 29597 0.354772 - . ID=CGI_10004076; scaffold40388 TRF Tandem_Repeat 29546 29597 104 + . . scaffold40388 GLEAN mRNA 34009 34069 0.354772 - . ID=CGI_10004076; scaffold40388 TRF Tandem_Repeat 34009 34069 58 + . . scaffold40388 GLEAN mRNA 34000 34057 0.354772 - . ID=CGI_10004076; scaffold40388 TRF Tandem_Repeat 34000 34057 64 + . . scaffold40388 GLEAN mRNA 65298 65347 0.999515 - . ID=CGI_10004078; scaffold40388 TRF Tandem_Repeat 65298 65347 57 + . . scaffold40438 GLEAN mRNA 9326 9350 0.617633 - . ID=CGI_10004080; scaffold40438 WUBlastX LINE_L2 9326 9700 41 - . . scaffold40438 GLEAN mRNA 66011 66726 0.617242 + . ID=CGI_10004081; scaffold40438 TRF Tandem_Repeat 66011 66726 887 + . . scaffold40438 GLEAN mRNA 76737 76768 0.617242 + . ID=CGI_10004081; scaffold40438 TRF Tandem_Repeat 76737 76768 64 + . . scaffold40438 GLEAN mRNA 79724 79766 0.617242 + . ID=CGI_10004081; scaffold40438 TRF Tandem_Repeat 79724 79766 86 + . . scaffold40438 GLEAN mRNA 80077 80103 0.617242 + . ID=CGI_10004081; scaffold40438 TRF Tandem_Repeat 80077 80103 54 + . . scaffold40404 GLEAN mRNA 64079 64117 0.660218 - . ID=CGI_10004086; scaffold40404 TRF Tandem_Repeat 64079 64117 78 + . . scaffold40404 GLEAN mRNA 70170 70208 0.660218 - . ID=CGI_10004086; scaffold40404 TRF Tandem_Repeat 70170 70208 55 + . . scaffold40404 GLEAN mRNA 72442 72864 0.660218 - . ID=CGI_10004086; scaffold40404 TRF Tandem_Repeat 72442 72864 632 + . . scaffold40404 GLEAN mRNA 73805 73901 0.660218 - . ID=CGI_10004086; scaffold40404 TRF Tandem_Repeat 73805 73901 74 + . . scaffold40404 GLEAN mRNA 64880 66388 0.660218 - . ID=CGI_10004086; scaffold40404 TRF Tandem_Repeat 64880 66388 2065 + . . scaffold40456 GLEAN mRNA 34676 35164 0.384037 + . ID=CGI_10004088; scaffold40456 TRF Tandem_Repeat 34676 35164 726 + . . scaffold40456 GLEAN mRNA 43748 44016 0.384037 + . ID=CGI_10004088; scaffold40456 TRF Tandem_Repeat 43748 44016 79 + . . scaffold40456 GLEAN mRNA 43866 44031 0.384037 + . ID=CGI_10004088; scaffold40456 TRF Tandem_Repeat 43866 44031 165 + . . scaffold40456 GLEAN mRNA 43865 44031 0.384037 + . ID=CGI_10004088; scaffold40456 TRF Tandem_Repeat 43865 44031 183 + . . scaffold40456 GLEAN mRNA 34676 35164 1 - . ID=CGI_10004089; scaffold40456 TRF Tandem_Repeat 34676 35164 726 + . . scaffold40456 GLEAN mRNA 74874 75118 0.995749 + . ID=CGI_10004091; scaffold40456 TRF Tandem_Repeat 74874 75118 151 + . . scaffold40456 GLEAN mRNA 79521 79674 0.995749 + . ID=CGI_10004091; scaffold40456 TRF Tandem_Repeat 79521 79674 164 + . . scaffold1558 GLEAN mRNA 47484 47520 0.517269 - . ID=CGI_10004094; scaffold1558 TRF Tandem_Repeat 47484 47520 74 + . . scaffold1558 GLEAN mRNA 41713 41853 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX LINE_L1 41713 41853 37 - . . scaffold1558 GLEAN mRNA 40501 40854 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX LINE_L1 40501 40854 100 - . . scaffold1558 GLEAN mRNA 41047 41346 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX LINE_L1-Tx1 41047 41346 34 - . . scaffold1558 GLEAN mRNA 41366 41689 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX LINE_L1-Tx1 41366 41689 22 - . . scaffold1558 GLEAN mRNA 40901 41203 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX LINE_L1-Tx1 40901 41203 33 - . . scaffold1558 GLEAN mRNA 41701 41799 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX LINE_L1 41701 41799 52 - . . scaffold1558 GLEAN mRNA 41203 41463 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX LINE_L1-Tx1 41203 41463 53 - . . scaffold1558 GLEAN mRNA 41203 41394 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX LINE_L1-Tx1 41203 41394 57 - . . scaffold1558 GLEAN mRNA 41102 41233 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX LINE_L1 41102 41233 59 - . . scaffold1558 GLEAN mRNA 41203 41352 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX LINE_L1 41203 41352 65 - . . scaffold1558 GLEAN mRNA 38105 38251 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX LINE_L1-Tx1 38105 38251 49 - . . scaffold1558 GLEAN mRNA 51630 51716 0.517269 - . ID=CGI_10004094; scaffold1558 TRF Tandem_Repeat 51630 51716 129 + . . scaffold1558 GLEAN mRNA 54772 54833 0.517269 - . ID=CGI_10004094; scaffold1558 TRF Tandem_Repeat 54772 54833 124 + . . scaffold1558 GLEAN mRNA 61497 61784 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX LINE_L1-Tx1 61497 61784 59 + . . scaffold1558 GLEAN mRNA 61596 61784 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX LINE_L1-Tx1 61596 61784 71 + . . scaffold40420 GLEAN mRNA 2951 3027 1 - . ID=CGI_10004096; scaffold40420 TRF Tandem_Repeat 2418 3027 826 + . . scaffold40420 GLEAN mRNA 7131 7174 1 - . ID=CGI_10004096; scaffold40420 TRF Tandem_Repeat 7131 7174 88 + . . scaffold40420 GLEAN mRNA 33180 34213 1 + . ID=CGI_10004097; scaffold40420 TRF Tandem_Repeat 33180 34213 924 + . . scaffold40420 GLEAN mRNA 41003 41650 1 - . ID=CGI_10004098; scaffold40420 WUBlastX LINE_CR1 41003 41650 93 + . . scaffold40420 GLEAN mRNA 41003 41326 1 - . ID=CGI_10004098; scaffold40420 WUBlastX LINE_CR1 41003 41326 149 + . . scaffold40420 GLEAN mRNA 50273 50309 1 + . ID=CGI_10004099; scaffold40420 TRF Tandem_Repeat 50273 50309 74 + . . scaffold549 GLEAN mRNA 8122 8202 0.999993 + . ID=CGI_10004100; scaffold549 WUBlastX LINE_RTE-X 8122 8202 36 - . . scaffold549 GLEAN mRNA 8416 8565 0.999993 + . ID=CGI_10004100; scaffold549 WUBlastX LINE_RTE-X 8416 8565 26 - . . scaffold549 GLEAN mRNA 8416 8481 0.999993 + . ID=CGI_10004100; scaffold549 WUBlastX LINE_RTE-X 8416 8481 39 - . . scaffold549 GLEAN mRNA 8536 8565 0.999993 + . ID=CGI_10004100; scaffold549 WUBlastX LINE_RTE-X 8536 8565 29 - . . scaffold549 GLEAN mRNA 20229 20366 0.920096 - . ID=CGI_10004102; scaffold549 TRF Tandem_Repeat 20229 20366 267 + . . scaffold549 GLEAN mRNA 20393 20542 0.920096 - . ID=CGI_10004102; scaffold549 TRF Tandem_Repeat 20393 20542 124 + . . scaffold549 GLEAN mRNA 21017 21246 0.920096 - . ID=CGI_10004102; scaffold549 TRF Tandem_Repeat 21017 21246 379 + . . scaffold549 GLEAN mRNA 21601 22072 0.920096 - . ID=CGI_10004102; scaffold549 TRF Tandem_Repeat 21601 22072 450 + . . scaffold549 GLEAN mRNA 32703 32739 0.976872 + . ID=CGI_10004103; scaffold549 TRF Tandem_Repeat 32703 32739 65 + . . scaffold549 GLEAN mRNA 35357 36737 0.976872 + . ID=CGI_10004103; scaffold549 TRF Tandem_Repeat 35357 36737 1971 + . . scaffold549 GLEAN mRNA 37445 37743 0.976872 + . ID=CGI_10004103; scaffold549 TRF Tandem_Repeat 37445 37743 293 + . . scaffold549 GLEAN mRNA 53551 53584 0.976872 + . ID=CGI_10004103; scaffold549 TRF Tandem_Repeat 53551 53584 61 + . . scaffold549 GLEAN mRNA 60496 60547 0.976872 + . ID=CGI_10004103; scaffold549 TRF Tandem_Repeat 60496 60547 68 + . . scaffold549 GLEAN mRNA 59385 59585 0.976872 + . ID=CGI_10004103; scaffold549 WUBlastX LINE_RTE-BovB 59385 59585 153 + . . scaffold549 GLEAN mRNA 59563 59670 0.976872 + . ID=CGI_10004103; scaffold549 WUBlastX LINE_RTE-BovB 59563 59670 55 + . . scaffold549 GLEAN mRNA 59078 59395 0.976872 + . ID=CGI_10004103; scaffold549 WUBlastX LINE_RTE-BovB 59078 59395 369 + . . scaffold549 GLEAN mRNA 59660 59884 0.976872 + . ID=CGI_10004103; scaffold549 WUBlastX LINE_RTE-BovB 59660 59884 131 + . . scaffold549 GLEAN mRNA 53551 53584 0.999759 - . ID=CGI_10004104; scaffold549 TRF Tandem_Repeat 53551 53584 61 + . . scaffold549 GLEAN mRNA 60496 60547 0.999759 - . ID=CGI_10004104; scaffold549 TRF Tandem_Repeat 60496 60547 68 + . . scaffold549 GLEAN mRNA 59385 59585 0.999759 - . ID=CGI_10004104; scaffold549 WUBlastX LINE_RTE-BovB 59385 59585 153 + . . scaffold549 GLEAN mRNA 59563 59670 0.999759 - . ID=CGI_10004104; scaffold549 WUBlastX LINE_RTE-BovB 59563 59670 55 + . . scaffold549 GLEAN mRNA 59078 59395 0.999759 - . ID=CGI_10004104; scaffold549 WUBlastX LINE_RTE-BovB 59078 59395 369 + . . scaffold549 GLEAN mRNA 59660 59884 0.999759 - . ID=CGI_10004104; scaffold549 WUBlastX LINE_RTE-BovB 59660 59884 131 + . . scaffold40442 GLEAN mRNA 54398 54527 0.535158 - . ID=CGI_10004109; scaffold40442 TRF Tandem_Repeat 54398 54527 156 + . . scaffold40442 GLEAN mRNA 54392 54510 0.535158 - . ID=CGI_10004109; scaffold40442 TRF Tandem_Repeat 54392 54510 80 + . . scaffold40412 GLEAN mRNA 9466 9624 0.991013 - . ID=CGI_10004112; scaffold40412 WUBlastX DNA_Harbinger 9466 9624 51 - . . scaffold40412 GLEAN mRNA 7174 7386 0.991013 - . ID=CGI_10004112; scaffold40412 WUBlastX DNA_Harbinger 7174 7386 69 + . . scaffold40412 GLEAN mRNA 82406 82450 0.253275 + . ID=CGI_10004114; scaffold40412 TRF Tandem_Repeat 82406 82450 90 + . . scaffold40412 GLEAN mRNA 82661 83550 0.253275 + . ID=CGI_10004114; scaffold40412 TRF Tandem_Repeat 82661 83550 1359 + . . scaffold40412 GLEAN mRNA 82406 82450 0.999999 - . ID=CGI_10004115; scaffold40412 TRF Tandem_Repeat 82406 82450 90 + . . scaffold40412 GLEAN mRNA 82661 83550 0.999999 - . ID=CGI_10004115; scaffold40412 TRF Tandem_Repeat 82661 83550 1359 + . . scaffold40454 GLEAN mRNA 44919 44967 0.999029 + . ID=CGI_10004118; scaffold40454 TRF Tandem_Repeat 44919 44967 62 + . . scaffold40454 GLEAN mRNA 44917 44965 0.999029 + . ID=CGI_10004118; scaffold40454 TRF Tandem_Repeat 44917 44965 71 + . . scaffold40454 GLEAN mRNA 80258 80334 0.999797 + . ID=CGI_10004121; scaffold40454 TRF Tandem_Repeat 80258 80334 93 + . . scaffold40454 GLEAN mRNA 83456 83626 1 - . ID=CGI_10004122; scaffold40454 WUBlastX LINE_RTE-BovB 83456 83626 37 + . . scaffold40454 GLEAN mRNA 83347 83617 1 - . ID=CGI_10004122; scaffold40454 WUBlastX LINE_RTE-BovB 83168 83617 33 + . . scaffold40454 GLEAN mRNA 85794 86804 1 - . ID=CGI_10004122; scaffold40454 WUBlastX DNA_TcMar-Tc1 85794 86804 212 - . . scaffold1654 GLEAN mRNA 32713 32767 0.503036 + . ID=CGI_10004123; scaffold1654 TRF Tandem_Repeat 32713 32767 56 + . . scaffold1654 GLEAN mRNA 36889 37563 0.956995 - . ID=CGI_10004124; scaffold1654 TRF Tandem_Repeat 36889 37563 589 + . . scaffold1654 GLEAN mRNA 36834 37563 0.956995 - . ID=CGI_10004124; scaffold1654 TRF Tandem_Repeat 36834 37563 643 + . . scaffold1654 GLEAN mRNA 82586 82687 0.790661 + . ID=CGI_10004125; scaffold1654 TRF Tandem_Repeat 82586 82687 100 + . . scaffold1654 GLEAN mRNA 85687 85711 0.790661 + . ID=CGI_10004125; scaffold1654 TRF Tandem_Repeat 85687 85711 50 + . . scaffold40424 GLEAN mRNA 28065 28121 0.651302 - . ID=CGI_10004127; scaffold40424 TRF Tandem_Repeat 28065 28121 51 + . . scaffold40424 GLEAN mRNA 29559 29603 0.651302 - . ID=CGI_10004127; scaffold40424 TRF Tandem_Repeat 29559 29603 90 + . . scaffold40424 GLEAN mRNA 26286 26483 0.651302 - . ID=CGI_10004127; scaffold40424 WUBlastX DNA_Sola 26286 26483 126 - . . scaffold40424 GLEAN mRNA 25032 25325 0.651302 - . ID=CGI_10004127; scaffold40424 WUBlastX DNA_Sola 25032 25325 119 - . . scaffold40424 GLEAN mRNA 26807 27022 0.651302 - . ID=CGI_10004127; scaffold40424 WUBlastX DNA_Sola 26807 27022 59 - . . scaffold40424 GLEAN mRNA 25065 25292 0.651302 - . ID=CGI_10004127; scaffold40424 WUBlastX DNA_Sola 25065 25292 160 - . . scaffold40424 GLEAN mRNA 41556 41634 0.651302 - . ID=CGI_10004127; scaffold40424 TRF Tandem_Repeat 41556 41634 158 + . . scaffold40514 GLEAN mRNA 29170 29218 1 + . ID=CGI_10004130; scaffold40514 TRF Tandem_Repeat 29170 29356 338 + . . scaffold40514 GLEAN mRNA 37435 37543 0.997928 - . ID=CGI_10004131; scaffold40514 TRF Tandem_Repeat 37435 37543 134 + . . scaffold40514 GLEAN mRNA 37820 38483 0.997928 - . ID=CGI_10004131; scaffold40514 TRF Tandem_Repeat 37820 38483 436 + . . scaffold40514 GLEAN mRNA 38496 38897 0.997928 - . ID=CGI_10004131; scaffold40514 TRF Tandem_Repeat 38496 38897 561 + . . scaffold40514 GLEAN mRNA 38496 38897 0.997928 - . ID=CGI_10004131; scaffold40514 TRF Tandem_Repeat 38496 38897 566 + . . scaffold40514 GLEAN mRNA 40266 40512 0.997928 - . ID=CGI_10004131; scaffold40514 TRF Tandem_Repeat 40266 40512 286 + . . scaffold40514 GLEAN mRNA 40699 40804 0.997928 - . ID=CGI_10004131; scaffold40514 TRF Tandem_Repeat 40699 40804 106 + . . scaffold40514 GLEAN mRNA 42198 42247 0.997928 - . ID=CGI_10004131; scaffold40514 TRF Tandem_Repeat 42198 42247 86 + . . scaffold40514 GLEAN mRNA 42390 43566 0.997928 - . ID=CGI_10004131; scaffold40514 TRF Tandem_Repeat 42390 43566 2264 + . . scaffold40514 GLEAN mRNA 52880 53087 1 + . ID=CGI_10004132; scaffold40514 TRF Tandem_Repeat 52880 53087 211 + . . scaffold40514 GLEAN mRNA 53253 53551 1 + . ID=CGI_10004132; scaffold40514 TRF Tandem_Repeat 53253 53551 311 + . . scaffold40514 GLEAN mRNA 53253 53787 1 + . ID=CGI_10004132; scaffold40514 TRF Tandem_Repeat 53253 53787 405 + . . scaffold40514 GLEAN mRNA 53253 53787 1 + . ID=CGI_10004132; scaffold40514 TRF Tandem_Repeat 53253 53787 452 + . . scaffold40514 GLEAN mRNA 53558 53745 1 + . ID=CGI_10004132; scaffold40514 TRF Tandem_Repeat 53558 53745 153 + . . scaffold40514 GLEAN mRNA 55192 56053 1 + . ID=CGI_10004132; scaffold40514 TRF Tandem_Repeat 55192 56053 1170 + . . scaffold40514 GLEAN mRNA 60931 61260 1 + . ID=CGI_10004132; scaffold40514 TRF Tandem_Repeat 60931 61260 574 + . . scaffold40514 GLEAN mRNA 60862 61260 1 + . ID=CGI_10004132; scaffold40514 TRF Tandem_Repeat 60862 61260 600 + . . scaffold40514 GLEAN mRNA 82549 82601 0.983328 - . ID=CGI_10004134; scaffold40514 TRF Tandem_Repeat 82549 82601 106 + . . scaffold1680 GLEAN mRNA 52827 52890 1 + . ID=CGI_10004139; scaffold1680 TRF Tandem_Repeat 52827 52890 128 + . . scaffold1680 GLEAN mRNA 60410 61050 0.648461 - . ID=CGI_10004140; scaffold1680 TRF Tandem_Repeat 60410 61050 577 + . . scaffold1680 GLEAN mRNA 62663 63318 0.648461 - . ID=CGI_10004140; scaffold1680 TRF Tandem_Repeat 62663 63318 778 + . . scaffold1680 GLEAN mRNA 78245 79945 0.648461 - . ID=CGI_10004140; scaffold1680 TRF Tandem_Repeat 78245 79945 2496 + . . scaffold1680 GLEAN mRNA 80107 80152 0.648461 - . ID=CGI_10004140; scaffold1680 TRF Tandem_Repeat 80107 80152 58 + . . scaffold1680 GLEAN mRNA 73494 74306 0.648461 - . ID=CGI_10004140; scaffold1680 WUBlastX LTR_Gypsy-Cigr 73494 74306 577 + . . scaffold1680 GLEAN mRNA 74304 74582 0.648461 - . ID=CGI_10004140; scaffold1680 WUBlastX LTR_Copia 74304 74582 20 + . . scaffold1680 GLEAN mRNA 69575 70492 0.648461 - . ID=CGI_10004140; scaffold1680 WUBlastX LTR_Gypsy 69575 70492 62 + . . scaffold1680 GLEAN mRNA 69914 70450 0.648461 - . ID=CGI_10004140; scaffold1680 WUBlastX LTR_Gypsy-Cigr 69914 70450 209 + . . scaffold1680 GLEAN mRNA 70847 73489 0.648461 - . ID=CGI_10004140; scaffold1680 WUBlastX LTR_Gypsy 70847 73489 1247 + . . scaffold1680 GLEAN mRNA 73485 74465 0.648461 - . ID=CGI_10004140; scaffold1680 WUBlastX LTR_Gypsy 73485 74465 376 + . . scaffold1680 GLEAN mRNA 71324 73489 0.648461 - . ID=CGI_10004140; scaffold1680 WUBlastX LTR_Gypsy 71324 73489 1396 + . . scaffold1680 GLEAN mRNA 70049 72937 0.648461 - . ID=CGI_10004140; scaffold1680 WUBlastX LTR_Gypsy 70049 72937 774 + . . scaffold1680 GLEAN mRNA 69782 70291 0.648461 - . ID=CGI_10004140; scaffold1680 WUBlastX LTR_Gypsy 69782 70291 64 + . . scaffold1680 GLEAN mRNA 86044 86076 0.648461 - . ID=CGI_10004140; scaffold1680 TRF Tandem_Repeat 86044 86076 50 + . . scaffold40440 GLEAN mRNA 21243 21376 0.811713 + . ID=CGI_10004142; scaffold40440 TRF Tandem_Repeat 21243 21376 119 + . . scaffold40440 GLEAN mRNA 22387 22503 0.811713 + . ID=CGI_10004142; scaffold40440 TRF Tandem_Repeat 22387 22503 118 + . . scaffold40440 GLEAN mRNA 22997 23024 0.811713 + . ID=CGI_10004142; scaffold40440 TRF Tandem_Repeat 22997 23024 56 + . . scaffold40440 GLEAN mRNA 34274 35053 0.811713 + . ID=CGI_10004142; scaffold40440 WUBlastX LTR_Gypsy-Cigr 34274 35053 166 - . . scaffold40440 GLEAN mRNA 33215 34165 0.811713 + . ID=CGI_10004142; scaffold40440 WUBlastX LTR_Gypsy 33215 34165 83 - . . scaffold40440 GLEAN mRNA 33644 34804 0.811713 + . ID=CGI_10004142; scaffold40440 WUBlastX LTR_Gypsy 33644 34804 136 - . . scaffold40440 GLEAN mRNA 34508 35182 0.811713 + . ID=CGI_10004142; scaffold40440 WUBlastX LTR_Gypsy 34508 35182 70 - . . scaffold40440 GLEAN mRNA 57141 57181 0.320377 - . ID=CGI_10004144; scaffold40440 TRF Tandem_Repeat 57141 57181 82 + . . scaffold40440 GLEAN mRNA 60085 60147 0.320377 - . ID=CGI_10004144; scaffold40440 TRF Tandem_Repeat 60085 60147 117 + . . scaffold40440 GLEAN mRNA 60833 61837 0.320377 - . ID=CGI_10004144; scaffold40440 TRF Tandem_Repeat 60833 61837 1475 + . . scaffold40440 GLEAN mRNA 62457 62496 0.320377 - . ID=CGI_10004144; scaffold40440 TRF Tandem_Repeat 62457 62496 80 + . . scaffold40440 GLEAN mRNA 62993 63048 0.320377 - . ID=CGI_10004144; scaffold40440 TRF Tandem_Repeat 62993 63048 112 + . . scaffold40440 GLEAN mRNA 54722 55012 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 54722 55012 34 + . . scaffold40440 GLEAN mRNA 54737 55063 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 54737 55063 24 + . . scaffold40440 GLEAN mRNA 55240 55485 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 55240 55485 71 + . . scaffold40440 GLEAN mRNA 51469 52263 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 51469 52263 353 + . . scaffold40440 GLEAN mRNA 52314 52529 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 52314 52529 63 + . . scaffold40440 GLEAN mRNA 52511 52627 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 52511 52627 20 + . . scaffold40440 GLEAN mRNA 54782 54988 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 54782 54988 56 + . . scaffold40440 GLEAN mRNA 52260 52532 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_DIRS 52260 52532 23 + . . scaffold40440 GLEAN mRNA 52939 53352 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LINE_Penelope 52939 53352 59 + . . scaffold40440 GLEAN mRNA 54746 54973 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 54746 54973 54 + . . scaffold40440 GLEAN mRNA 54428 54544 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LINE_Penelope 54428 54544 32 + . . scaffold40440 GLEAN mRNA 53023 54330 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LINE_Penelope 53023 54330 262 + . . scaffold40440 GLEAN mRNA 54413 54550 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LINE_Penelope 54413 54550 28 + . . scaffold40440 GLEAN mRNA 53950 54405 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LINE_Penelope 53950 54405 33 + . . scaffold40440 GLEAN mRNA 60085 60147 0.499918 + . ID=CGI_10004145; scaffold40440 TRF Tandem_Repeat 60085 60147 117 + . . scaffold40440 GLEAN mRNA 60833 61837 0.499918 + . ID=CGI_10004145; scaffold40440 TRF Tandem_Repeat 60833 61837 1475 + . . scaffold40440 GLEAN mRNA 62457 62496 0.499918 + . ID=CGI_10004145; scaffold40440 TRF Tandem_Repeat 62457 62496 80 + . . scaffold40440 GLEAN mRNA 62993 63048 0.499918 + . ID=CGI_10004145; scaffold40440 TRF Tandem_Repeat 62993 63048 112 + . . scaffold40440 GLEAN mRNA 75227 75276 0.499918 + . ID=CGI_10004145; scaffold40440 TRF Tandem_Repeat 75227 75276 100 + . . scaffold40440 GLEAN mRNA 79806 79857 0.499918 + . ID=CGI_10004145; scaffold40440 TRF Tandem_Repeat 79806 79857 95 + . . scaffold40440 GLEAN mRNA 81467 81538 0.499918 + . ID=CGI_10004145; scaffold40440 TRF Tandem_Repeat 81467 81538 99 + . . scaffold40440 GLEAN mRNA 82325 82351 0.499918 + . ID=CGI_10004145; scaffold40440 TRF Tandem_Repeat 82325 82351 54 + . . scaffold40440 GLEAN mRNA 75227 75276 0.999999 - . ID=CGI_10004146; scaffold40440 TRF Tandem_Repeat 75227 75276 100 + . . scaffold40440 GLEAN mRNA 79806 79857 0.999999 - . ID=CGI_10004146; scaffold40440 TRF Tandem_Repeat 79806 79857 95 + . . scaffold40440 GLEAN mRNA 81467 81538 0.999999 - . ID=CGI_10004146; scaffold40440 TRF Tandem_Repeat 81467 81538 99 + . . scaffold40440 GLEAN mRNA 82325 82351 0.999999 - . ID=CGI_10004146; scaffold40440 TRF Tandem_Repeat 82325 82351 54 + . . scaffold644 GLEAN mRNA 14216 14271 0.072343 + . ID=CGI_10004148; scaffold644 TRF Tandem_Repeat 14216 14271 112 + . . scaffold644 GLEAN mRNA 34251 34304 0.783968 - . ID=CGI_10004150; scaffold644 TRF Tandem_Repeat 34251 34304 99 + . . scaffold1187 GLEAN mRNA 84261 84593 0.998821 - . ID=CGI_10004160; scaffold1187 TRF Tandem_Repeat 84261 84593 335 + . . scaffold1501 GLEAN mRNA 24865 24892 0.906757 + . ID=CGI_10004162; scaffold1501 TRF Tandem_Repeat 24865 24892 56 + . . scaffold1501 GLEAN mRNA 27311 27374 0.906757 + . ID=CGI_10004162; scaffold1501 TRF Tandem_Repeat 27311 27374 128 + . . scaffold1501 GLEAN mRNA 57112 57303 0.988822 - . ID=CGI_10004167; scaffold1501 TRF Tandem_Repeat 57112 57303 196 + . . scaffold1501 GLEAN mRNA 76086 76240 0.801598 + . ID=CGI_10004168; scaffold1501 TRF Tandem_Repeat 76086 76240 204 + . . scaffold1501 GLEAN mRNA 79083 79836 0.801598 + . ID=CGI_10004168; scaffold1501 TRF Tandem_Repeat 79083 79836 693 + . . scaffold1501 GLEAN mRNA 91282 91339 0.801598 + . ID=CGI_10004168; scaffold1501 TRF Tandem_Repeat 91282 91339 116 + . . scaffold823 GLEAN mRNA 65224 65336 0.999676 - . ID=CGI_10004169; scaffold823 TRF Tandem_Repeat 65224 65336 115 + . . scaffold823 GLEAN mRNA 59986 60549 0.999676 - . ID=CGI_10004169; scaffold823 WUBlastX LTR_Gypsy 59986 60549 473 + . . scaffold823 GLEAN mRNA 59441 59995 0.999676 - . ID=CGI_10004169; scaffold823 WUBlastX LTR_Gypsy 59441 59995 386 + . . scaffold40548 GLEAN mRNA 25668 25724 1 + . ID=CGI_10004176; scaffold40548 TRF Tandem_Repeat 25668 25724 114 + . . scaffold40548 GLEAN mRNA 63407 63660 1 - . ID=CGI_10004178; scaffold40548 TRF Tandem_Repeat 63407 63660 333 + . . scaffold40548 GLEAN mRNA 92554 92610 1 + . ID=CGI_10004181; scaffold40548 TRF Tandem_Repeat 92554 92610 73 + . . scaffold654 GLEAN mRNA 2148 2204 0.499624 - . ID=CGI_10004182; scaffold654 TRF Tandem_Repeat 2148 2204 105 + . . scaffold654 GLEAN mRNA 8495 8572 0.499624 - . ID=CGI_10004182; scaffold654 TRF Tandem_Repeat 8495 8572 140 + . . scaffold654 GLEAN mRNA 10796 10910 0.499624 - . ID=CGI_10004182; scaffold654 TRF Tandem_Repeat 10796 10910 83 + . . scaffold654 GLEAN mRNA 3469 3660 0.499624 - . ID=CGI_10004182; scaffold654 WUBlastX LINE_RTE-X 3469 3660 27 + . . scaffold654 GLEAN mRNA 85661 85704 0.999925 - . ID=CGI_10004186; scaffold654 TRF Tandem_Repeat 85661 85704 88 + . . scaffold40492 GLEAN mRNA 7471 7500 1 - . ID=CGI_10004188; scaffold40492 TRF Tandem_Repeat 7471 7500 60 + . . scaffold40512 GLEAN mRNA 34650 34699 0.783329 + . ID=CGI_10004193; scaffold40512 TRF Tandem_Repeat 34650 34699 75 + . . scaffold40512 GLEAN mRNA 36107 37031 0.783329 + . ID=CGI_10004193; scaffold40512 TRF Tandem_Repeat 36107 37031 1223 + . . scaffold40512 GLEAN mRNA 43477 43569 0.783329 + . ID=CGI_10004193; scaffold40512 TRF Tandem_Repeat 43477 43569 159 + . . scaffold40512 GLEAN mRNA 50930 51472 0.783329 + . ID=CGI_10004193; scaffold40512 WUBlastX DNA_IS4EU 50930 51472 91 + . . scaffold40512 GLEAN mRNA 55381 55599 0.783329 + . ID=CGI_10004193; scaffold40512 WUBlastX DNA_Kolobok-IS4 55381 55599 68 - . . scaffold40512 GLEAN mRNA 52153 52719 0.783329 + . ID=CGI_10004193; scaffold40512 WUBlastX DNA_IS4EU 52153 52719 189 + . . scaffold40512 GLEAN mRNA 51587 51757 0.783329 + . ID=CGI_10004193; scaffold40512 WUBlastX DNA_IS4EU 51587 51757 31 + . . scaffold40512 GLEAN mRNA 53550 54464 0.783329 + . ID=CGI_10004193; scaffold40512 WUBlastX DNA_IS4EU 53550 54464 446 - . . scaffold40512 GLEAN mRNA 55327 55611 0.783329 + . ID=CGI_10004193; scaffold40512 WUBlastX DNA_IS4EU 55327 55611 46 - . . scaffold40512 GLEAN mRNA 51632 51919 0.783329 + . ID=CGI_10004193; scaffold40512 WUBlastX DNA_IS4EU 51632 51919 53 + . . scaffold40512 GLEAN mRNA 53892 54428 0.999999 - . ID=CGI_10004194; scaffold40512 WUBlastX DNA_IS4EU 53550 54464 446 - . . scaffold40526 GLEAN mRNA 16667 16707 0.999949 + . ID=CGI_10004196; scaffold40526 TRF Tandem_Repeat 16667 16707 57 + . . scaffold40526 GLEAN mRNA 18554 18596 0.999949 + . ID=CGI_10004196; scaffold40526 TRF Tandem_Repeat 18554 18596 59 + . . scaffold40526 GLEAN mRNA 18548 18596 0.999949 + . ID=CGI_10004196; scaffold40526 TRF Tandem_Repeat 18548 18596 73 + . . scaffold40564 GLEAN mRNA 4889 5140 0.983455 + . ID=CGI_10004206; scaffold40564 WUBlastX DNA_Harbinger 4889 5140 76 + . . scaffold40564 GLEAN mRNA 9689 9752 0.488599 + . ID=CGI_10004207; scaffold40564 TRF Tandem_Repeat 9689 9752 58 + . . scaffold40564 GLEAN mRNA 8514 9380 0.488599 + . ID=CGI_10004207; scaffold40564 WUBlastX LINE_L1 8514 9380 222 + . . scaffold40564 GLEAN mRNA 7416 7808 0.488599 + . ID=CGI_10004207; scaffold40564 WUBlastX LINE_L1-Tx1 7416 7808 78 + . . scaffold40564 GLEAN mRNA 8342 8851 0.488599 + . ID=CGI_10004207; scaffold40564 WUBlastX LINE_L1 8342 8851 34 + . . scaffold40564 GLEAN mRNA 8889 9605 0.488599 + . ID=CGI_10004207; scaffold40564 WUBlastX LINE_L1 8889 9605 184 + . . scaffold40564 GLEAN mRNA 10046 10123 0.488599 + . ID=CGI_10004207; scaffold40564 WUBlastX LINE_DRE 10046 10123 23 + . . scaffold40564 GLEAN mRNA 22935 22985 0.488599 + . ID=CGI_10004207; scaffold40564 TRF Tandem_Repeat 22935 22985 102 + . . scaffold40564 GLEAN mRNA 34682 34730 0.908957 - . ID=CGI_10004208; scaffold40564 TRF Tandem_Repeat 34682 34730 98 + . . scaffold40564 GLEAN mRNA 46309 46402 0.908957 - . ID=CGI_10004208; scaffold40564 TRF Tandem_Repeat 46309 46402 84 + . . scaffold40564 GLEAN mRNA 65907 65956 0.999674 - . ID=CGI_10004209; scaffold40564 TRF Tandem_Repeat 65907 65956 100 + . . scaffold40564 GLEAN mRNA 66012 66063 0.999674 - . ID=CGI_10004209; scaffold40564 TRF Tandem_Repeat 66012 66063 104 + . . scaffold1644 GLEAN mRNA 5145 5384 0.999756 - . ID=CGI_10004211; scaffold1644 TRF Tandem_Repeat 5145 5384 133 + . . scaffold1644 GLEAN mRNA 5281 5386 0.999756 - . ID=CGI_10004211; scaffold1644 TRF Tandem_Repeat 5281 5386 99 + . . scaffold1644 GLEAN mRNA 5371 5404 0.999756 - . ID=CGI_10004211; scaffold1644 TRF Tandem_Repeat 5371 5404 59 + . . scaffold1644 GLEAN mRNA 8162 9010 0.999756 - . ID=CGI_10004211; scaffold1644 TRF Tandem_Repeat 8162 9010 671 + . . scaffold1644 GLEAN mRNA 10061 10100 0.999756 - . ID=CGI_10004211; scaffold1644 TRF Tandem_Repeat 10061 10100 53 + . . scaffold1644 GLEAN mRNA 26735 26764 0.994071 - . ID=CGI_10004213; scaffold1644 TRF Tandem_Repeat 26735 26764 60 + . . scaffold1644 GLEAN mRNA 59661 60764 0.250771 - . ID=CGI_10004214; scaffold1644 WUBlastX DNA_Academ 59661 60764 404 - . . scaffold1644 GLEAN mRNA 62363 62599 0.250771 - . ID=CGI_10004214; scaffold1644 WUBlastX DNA_Academ 62363 62599 50 - . . scaffold1644 GLEAN mRNA 59113 59634 0.250771 - . ID=CGI_10004214; scaffold1644 WUBlastX DNA_Academ 59113 59634 164 - . . scaffold1644 GLEAN mRNA 60830 61432 0.250771 - . ID=CGI_10004214; scaffold1644 WUBlastX DNA_Academ 60830 61432 135 - . . scaffold1644 GLEAN mRNA 62122 62364 0.250771 - . ID=CGI_10004214; scaffold1644 WUBlastX DNA_Academ 62122 62364 57 - . . scaffold1644 GLEAN mRNA 62342 62539 0.250771 - . ID=CGI_10004214; scaffold1644 WUBlastX DNA_Academ 62342 62539 67 - . . scaffold1644 GLEAN mRNA 65804 65852 0.250771 - . ID=CGI_10004214; scaffold1644 TRF Tandem_Repeat 65804 65852 80 + . . scaffold415 GLEAN mRNA 27788 27852 1 + . ID=CGI_10004216; scaffold415 TRF Tandem_Repeat 27788 27852 130 + . . scaffold415 GLEAN mRNA 27852 27881 1 + . ID=CGI_10004216; scaffold415 TRF Tandem_Repeat 27852 27881 60 + . . scaffold415 GLEAN mRNA 28783 28819 1 + . ID=CGI_10004216; scaffold415 TRF Tandem_Repeat 28783 28819 74 + . . scaffold415 GLEAN mRNA 38300 38358 0.784737 - . ID=CGI_10004218; scaffold415 TRF Tandem_Repeat 38300 38358 59 + . . scaffold415 GLEAN mRNA 38309 38365 0.784737 - . ID=CGI_10004218; scaffold415 TRF Tandem_Repeat 38309 38365 66 + . . scaffold415 GLEAN mRNA 38300 38364 0.784737 - . ID=CGI_10004218; scaffold415 TRF Tandem_Repeat 38300 38364 69 + . . scaffold415 GLEAN mRNA 38309 38358 0.784737 - . ID=CGI_10004218; scaffold415 TRF Tandem_Repeat 38309 38358 57 + . . scaffold415 GLEAN mRNA 40038 40077 0.784737 - . ID=CGI_10004218; scaffold415 TRF Tandem_Repeat 40038 40077 80 + . . scaffold415 GLEAN mRNA 41499 41529 0.784737 - . ID=CGI_10004218; scaffold415 TRF Tandem_Repeat 41499 41529 62 + . . scaffold415 GLEAN mRNA 44905 47013 0.784737 - . ID=CGI_10004218; scaffold415 WUBlastX LINE_RTE-BovB 44905 47013 1590 + . . scaffold415 GLEAN mRNA 47028 47825 0.784737 - . ID=CGI_10004218; scaffold415 WUBlastX LINE_RTE-BovB 47028 47825 574 + . . scaffold415 GLEAN mRNA 49307 49366 0.784737 - . ID=CGI_10004218; scaffold415 TRF Tandem_Repeat 49307 49366 102 + . . scaffold415 GLEAN mRNA 51118 51386 0.784737 - . ID=CGI_10004218; scaffold415 TRF Tandem_Repeat 51118 51386 141 + . . scaffold415 GLEAN mRNA 51117 51385 0.784737 - . ID=CGI_10004218; scaffold415 TRF Tandem_Repeat 51117 51385 263 + . . scaffold910 GLEAN mRNA 63197 63231 0.997072 - . ID=CGI_10004228; scaffold910 TRF Tandem_Repeat 63197 63231 70 + . . scaffold910 GLEAN mRNA 63390 63424 0.997072 - . ID=CGI_10004228; scaffold910 TRF Tandem_Repeat 63390 63424 70 + . . scaffold910 GLEAN mRNA 67896 67966 0.997072 - . ID=CGI_10004228; scaffold910 TRF Tandem_Repeat 67896 67966 142 + . . scaffold910 GLEAN mRNA 69136 69229 0.997072 - . ID=CGI_10004228; scaffold910 TRF Tandem_Repeat 69136 69229 152 + . . scaffold910 GLEAN mRNA 70696 70843 0.997072 - . ID=CGI_10004228; scaffold910 TRF Tandem_Repeat 70696 70843 152 + . . scaffold40560 GLEAN mRNA 45605 45674 0.999218 - . ID=CGI_10004229; scaffold40560 TRF Tandem_Repeat 45605 45674 140 + . . scaffold40560 GLEAN mRNA 58493 58538 0.709835 - . ID=CGI_10004230; scaffold40560 TRF Tandem_Repeat 58493 58538 92 + . . scaffold40560 GLEAN mRNA 60461 60491 0.709835 - . ID=CGI_10004230; scaffold40560 TRF Tandem_Repeat 60461 60491 55 + . . scaffold40560 GLEAN mRNA 56407 56508 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 56407 56508 79 + . . scaffold40560 GLEAN mRNA 56261 56407 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 56261 56407 45 + . . scaffold40560 GLEAN mRNA 55649 55960 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 55649 55960 86 + . . scaffold40560 GLEAN mRNA 56407 56529 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 56407 56529 63 + . . scaffold40560 GLEAN mRNA 57072 57326 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 57072 57326 190 + . . scaffold40560 GLEAN mRNA 58070 58294 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 58070 58294 47 + . . scaffold40560 GLEAN mRNA 59483 59593 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 59483 59593 67 - . . scaffold40560 GLEAN mRNA 60566 60706 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 60566 60706 58 - . . scaffold40560 GLEAN mRNA 60566 60757 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 60566 60757 39 - . . scaffold180 GLEAN mRNA 21802 21843 0.558253 + . ID=CGI_10004232; scaffold180 TRF Tandem_Repeat 21802 21843 84 + . . scaffold180 GLEAN mRNA 22020 22063 0.558253 + . ID=CGI_10004232; scaffold180 TRF Tandem_Repeat 22020 22063 79 + . . scaffold180 GLEAN mRNA 23210 23244 0.558253 + . ID=CGI_10004232; scaffold180 TRF Tandem_Repeat 23210 23244 70 + . . scaffold180 GLEAN mRNA 26701 26735 0.558253 + . ID=CGI_10004232; scaffold180 TRF Tandem_Repeat 26701 26735 70 + . . scaffold180 GLEAN mRNA 30626 30798 0.648909 - . ID=CGI_10004233; scaffold180 TRF Tandem_Repeat 30626 30798 188 + . . scaffold180 GLEAN mRNA 30876 31391 0.648909 - . ID=CGI_10004233; scaffold180 TRF Tandem_Repeat 30876 31391 373 + . . scaffold180 GLEAN mRNA 30881 31391 0.648909 - . ID=CGI_10004233; scaffold180 TRF Tandem_Repeat 30881 31391 443 + . . scaffold180 GLEAN mRNA 45386 45418 0.648909 - . ID=CGI_10004233; scaffold180 TRF Tandem_Repeat 45386 45418 66 + . . scaffold180 GLEAN mRNA 36819 37214 0.648909 - . ID=CGI_10004233; scaffold180 WUBlastX RC_Helitron 36819 37214 71 - . . scaffold1782 GLEAN mRNA 10152 10300 0.99249 - . ID=CGI_10004240; scaffold1782 TRF Tandem_Repeat 10152 10300 97 + . . scaffold1782 GLEAN mRNA 10216 10362 0.99249 - . ID=CGI_10004240; scaffold1782 TRF Tandem_Repeat 10216 10362 73 + . . scaffold1782 GLEAN mRNA 11327 12088 0.99249 - . ID=CGI_10004240; scaffold1782 TRF Tandem_Repeat 11327 12088 735 + . . scaffold1782 GLEAN mRNA 12146 12189 0.99249 - . ID=CGI_10004240; scaffold1782 TRF Tandem_Repeat 12146 12189 72 + . . scaffold1782 GLEAN mRNA 18615 18878 0.99249 - . ID=CGI_10004240; scaffold1782 WUBlastX DNA_Kolobok 18615 18878 41 - . . scaffold1782 GLEAN mRNA 17769 18077 0.99249 - . ID=CGI_10004240; scaffold1782 WUBlastX DNA_Kolobok 17769 18077 82 - . . scaffold1782 GLEAN mRNA 19115 19231 0.99249 - . ID=CGI_10004240; scaffold1782 WUBlastX DNA_Kolobok 19115 19231 37 - . . scaffold1782 GLEAN mRNA 18663 18872 0.99249 - . ID=CGI_10004240; scaffold1782 WUBlastX DNA_Kolobok 18663 18872 78 - . . scaffold1782 GLEAN mRNA 30764 31382 0.718451 + . ID=CGI_10004241; scaffold1782 TRF Tandem_Repeat 30764 31382 812 + . . scaffold1782 GLEAN mRNA 32299 32623 0.718451 + . ID=CGI_10004241; scaffold1782 TRF Tandem_Repeat 32299 32623 321 + . . scaffold1782 GLEAN mRNA 40371 40555 0.718451 + . ID=CGI_10004241; scaffold1782 TRF Tandem_Repeat 40371 40555 318 + . . scaffold1782 GLEAN mRNA 41211 41616 0.718451 + . ID=CGI_10004241; scaffold1782 TRF Tandem_Repeat 41211 41616 794 + . . scaffold1782 GLEAN mRNA 42319 42668 0.718451 + . ID=CGI_10004241; scaffold1782 TRF Tandem_Repeat 42319 42668 691 + . . scaffold1782 GLEAN mRNA 44003 44512 0.718451 + . ID=CGI_10004241; scaffold1782 TRF Tandem_Repeat 44003 44512 822 + . . scaffold1782 GLEAN mRNA 35297 35536 0.718451 + . ID=CGI_10004241; scaffold1782 WUBlastX DNA_Crypton 35297 35536 78 - . . scaffold1782 GLEAN mRNA 35354 35971 0.718451 + . ID=CGI_10004241; scaffold1782 WUBlastX DNA_Crypton 35354 35971 338 - . . scaffold40584 GLEAN mRNA 40060 40305 0.702301 + . ID=CGI_10004249; scaffold40584 TRF Tandem_Repeat 40060 40305 77 + . . scaffold40584 GLEAN mRNA 58457 59029 0.702301 + . ID=CGI_10004249; scaffold40584 WUBlastX LINE_L1-Tx1 58457 59029 129 + . . scaffold40584 GLEAN mRNA 58430 58894 0.702301 + . ID=CGI_10004249; scaffold40584 WUBlastX LINE_CR1 58430 58894 133 + . . scaffold40556 GLEAN mRNA 11214 11372 0.715629 - . ID=CGI_10004250; scaffold40556 WUBlastX LTR_Ngaro 11214 11372 79 - . . scaffold40556 GLEAN mRNA 12230 12841 0.715629 - . ID=CGI_10004250; scaffold40556 WUBlastX LTR_Gypsy 12230 12841 170 + . . scaffold40556 GLEAN mRNA 11414 11701 0.715629 - . ID=CGI_10004250; scaffold40556 WUBlastX LTR_Ngaro 11414 11701 87 - . . scaffold40556 GLEAN mRNA 12323 12913 0.715629 - . ID=CGI_10004250; scaffold40556 WUBlastX LTR_Gypsy 12323 12913 309 + . . scaffold40556 GLEAN mRNA 11614 11856 0.715629 - . ID=CGI_10004250; scaffold40556 WUBlastX LTR_Ngaro 11614 11856 76 - . . scaffold40556 GLEAN mRNA 10204 10968 0.715629 - . ID=CGI_10004250; scaffold40556 WUBlastX LTR_Ngaro 10204 10968 248 - . . scaffold40556 GLEAN mRNA 12849 13145 0.715629 - . ID=CGI_10004250; scaffold40556 WUBlastX LTR_Gypsy-Cigr 12849 13145 49 + . . scaffold40556 GLEAN mRNA 11417 11611 0.715629 - . ID=CGI_10004250; scaffold40556 WUBlastX LTR_Ngaro 11417 11611 108 - . . scaffold40556 GLEAN mRNA 26179 26264 0.593391 + . ID=CGI_10004251; scaffold40556 TRF Tandem_Repeat 26179 26264 91 + . . scaffold40556 GLEAN mRNA 26329 26465 0.593391 + . ID=CGI_10004251; scaffold40556 TRF Tandem_Repeat 26329 26465 125 + . . scaffold40556 GLEAN mRNA 26564 26716 0.593391 + . ID=CGI_10004251; scaffold40556 TRF Tandem_Repeat 26564 26716 189 + . . scaffold40556 GLEAN mRNA 26790 26877 0.593391 + . ID=CGI_10004251; scaffold40556 TRF Tandem_Repeat 26790 26877 90 + . . scaffold40556 GLEAN mRNA 29861 30074 0.593391 + . ID=CGI_10004251; scaffold40556 TRF Tandem_Repeat 29861 30074 254 + . . scaffold40556 GLEAN mRNA 88739 88975 0.618241 - . ID=CGI_10004254; scaffold40556 WUBlastX LTR_Gypsy 88739 89080 64 - . . scaffold40556 GLEAN mRNA 88583 88975 0.618241 - . ID=CGI_10004254; scaffold40556 WUBlastX LTR_Gypsy 88583 89074 37 - . . scaffold40614 GLEAN mRNA 22699 22749 0.84036 + . ID=CGI_10004255; scaffold40614 TRF Tandem_Repeat 22699 22749 102 + . . scaffold40614 GLEAN mRNA 25459 26104 0.84036 + . ID=CGI_10004255; scaffold40614 TRF Tandem_Repeat 25459 26104 679 + . . scaffold40614 GLEAN mRNA 47264 47307 0.999376 - . ID=CGI_10004257; scaffold40614 TRF Tandem_Repeat 47264 47307 88 + . . scaffold40614 GLEAN mRNA 59634 59681 0.972217 + . ID=CGI_10004259; scaffold40614 TRF Tandem_Repeat 59634 59681 60 + . . scaffold40614 GLEAN mRNA 59635 59703 0.972217 + . ID=CGI_10004259; scaffold40614 TRF Tandem_Repeat 59635 59703 75 + . . scaffold40614 GLEAN mRNA 59635 59703 0.972217 + . ID=CGI_10004259; scaffold40614 TRF Tandem_Repeat 59635 59703 66 + . . scaffold40614 GLEAN mRNA 64948 65008 0.972217 + . ID=CGI_10004259; scaffold40614 TRF Tandem_Repeat 64948 65008 122 + . . scaffold40614 GLEAN mRNA 64043 64543 0.972217 + . ID=CGI_10004259; scaffold40614 WUBlastX LTR_DIRS 64043 64543 283 - . . scaffold40614 GLEAN mRNA 64546 64653 0.972217 + . ID=CGI_10004259; scaffold40614 WUBlastX LTR_DIRS 64546 64653 52 - . . scaffold40614 GLEAN mRNA 62290 62694 0.972217 + . ID=CGI_10004259; scaffold40614 WUBlastX LINE_L2 62290 62694 141 - . . scaffold40614 GLEAN mRNA 64546 64692 0.972217 + . ID=CGI_10004259; scaffold40614 WUBlastX LTR_DIRS 64546 64692 37 - . . scaffold40614 GLEAN mRNA 60948 61787 0.972217 + . ID=CGI_10004259; scaffold40614 WUBlastX LINE_L2 60948 61787 370 - . . scaffold40614 GLEAN mRNA 61802 62284 0.972217 + . ID=CGI_10004259; scaffold40614 WUBlastX LINE_L2 61802 62284 265 - . . scaffold40614 GLEAN mRNA 62290 62598 0.972217 + . ID=CGI_10004259; scaffold40614 WUBlastX LINE_L2 62290 62598 256 - . . scaffold40614 GLEAN mRNA 62673 63365 0.972217 + . ID=CGI_10004259; scaffold40614 WUBlastX LINE_L2 62673 63365 265 - . . scaffold633 GLEAN mRNA 27059 27085 0.77454 - . ID=CGI_10004268; scaffold633 TRF Tandem_Repeat 27059 27085 54 + . . scaffold633 GLEAN mRNA 19991 21067 0.77454 - . ID=CGI_10004268; scaffold633 WUBlastX LINE_L1-Tx1 19991 21067 158 + . . scaffold633 GLEAN mRNA 20207 21493 0.77454 - . ID=CGI_10004268; scaffold633 WUBlastX LINE_L1-Tx1 20207 21493 425 + . . scaffold633 GLEAN mRNA 56822 57517 0.82948 + . ID=CGI_10004269; scaffold633 WUBlastX LINE_L2 56822 57517 117 + . . scaffold633 GLEAN mRNA 54078 54476 0.82948 + . ID=CGI_10004269; scaffold633 WUBlastX LINE_Penelope 54078 54476 43 - . . scaffold633 GLEAN mRNA 56639 57370 0.82948 + . ID=CGI_10004269; scaffold633 WUBlastX LINE_L1 56639 57370 35 + . . scaffold633 GLEAN mRNA 56924 57457 0.82948 + . ID=CGI_10004269; scaffold633 WUBlastX LINE_L2 56924 57457 134 + . . scaffold40606 GLEAN mRNA 8875 8915 0.834284 + . ID=CGI_10004278; scaffold40606 TRF Tandem_Repeat 8875 8915 57 + . . scaffold40606 GLEAN mRNA 9324 9680 0.834284 + . ID=CGI_10004278; scaffold40606 WUBlastX LINE_RTE-X 9324 9680 55 - . . scaffold40606 GLEAN mRNA 9324 9521 0.834284 + . ID=CGI_10004278; scaffold40606 WUBlastX LINE_RTE-X 9324 9521 79 - . . scaffold40606 GLEAN mRNA 9082 9324 0.834284 + . ID=CGI_10004278; scaffold40606 WUBlastX LINE_RTE-X 9082 9324 114 - . . scaffold40606 GLEAN mRNA 24125 24365 0.834284 + . ID=CGI_10004278; scaffold40606 TRF Tandem_Repeat 24125 24365 410 + . . scaffold40606 GLEAN mRNA 25175 25668 0.834284 + . ID=CGI_10004278; scaffold40606 TRF Tandem_Repeat 25175 25668 394 + . . scaffold40606 GLEAN mRNA 25175 25668 0.834284 + . ID=CGI_10004278; scaffold40606 TRF Tandem_Repeat 25175 25668 435 + . . scaffold40606 GLEAN mRNA 30806 30845 0.834284 + . ID=CGI_10004278; scaffold40606 TRF Tandem_Repeat 30806 30845 80 + . . scaffold40606 GLEAN mRNA 33183 33398 0.834284 + . ID=CGI_10004278; scaffold40606 TRF Tandem_Repeat 33183 33398 344 + . . scaffold40606 GLEAN mRNA 38314 38643 0.999372 + . ID=CGI_10004279; scaffold40606 WUBlastX DNA_IS4EU 38293 38643 73 + . . scaffold40606 GLEAN mRNA 47041 50437 0.629781 - . ID=CGI_10004280; scaffold40606 TRF Tandem_Repeat 47041 50437 3328 + . . scaffold40606 GLEAN mRNA 47169 50437 0.629781 - . ID=CGI_10004280; scaffold40606 TRF Tandem_Repeat 47169 50437 3380 + . . scaffold40606 GLEAN mRNA 74316 74351 0.999675 - . ID=CGI_10004282; scaffold40606 TRF Tandem_Repeat 74316 74351 63 + . . scaffold40638 GLEAN mRNA 14435 14491 0.976327 + . ID=CGI_10004284; scaffold40638 TRF Tandem_Repeat 14435 14491 114 + . . scaffold40638 GLEAN mRNA 15805 15858 0.976327 + . ID=CGI_10004284; scaffold40638 TRF Tandem_Repeat 15805 15858 72 + . . scaffold40638 GLEAN mRNA 15796 15858 0.976327 + . ID=CGI_10004284; scaffold40638 TRF Tandem_Repeat 15796 15858 99 + . . scaffold40638 GLEAN mRNA 15801 15858 0.976327 + . ID=CGI_10004284; scaffold40638 TRF Tandem_Repeat 15801 15858 80 + . . scaffold40638 GLEAN mRNA 5627 5731 0.976327 + . ID=CGI_10004284; scaffold40638 WUBlastX DNA_Zator 5627 5731 28 + . . scaffold40638 GLEAN mRNA 5868 6071 0.976327 + . ID=CGI_10004284; scaffold40638 WUBlastX DNA_Zator 5868 6071 77 + . . scaffold40638 GLEAN mRNA 16028 17387 0.976327 + . ID=CGI_10004284; scaffold40638 TRF Tandem_Repeat 16028 17387 2030 + . . scaffold40638 GLEAN mRNA 16028 17387 0.976327 + . ID=CGI_10004284; scaffold40638 TRF Tandem_Repeat 16028 17387 2065 + . . scaffold40638 GLEAN mRNA 25506 25532 0.999332 + . ID=CGI_10004285; scaffold40638 TRF Tandem_Repeat 25506 25532 54 + . . scaffold40638 GLEAN mRNA 47314 47381 0.679878 - . ID=CGI_10004286; scaffold40638 TRF Tandem_Repeat 47314 47381 61 + . . scaffold40638 GLEAN mRNA 47314 47375 0.679878 - . ID=CGI_10004286; scaffold40638 TRF Tandem_Repeat 47314 47375 53 + . . scaffold40638 GLEAN mRNA 47330 47394 0.679878 - . ID=CGI_10004286; scaffold40638 TRF Tandem_Repeat 47330 47394 76 + . . scaffold40638 GLEAN mRNA 47313 47381 0.679878 - . ID=CGI_10004286; scaffold40638 TRF Tandem_Repeat 47313 47381 70 + . . scaffold40638 GLEAN mRNA 47313 47394 0.679878 - . ID=CGI_10004286; scaffold40638 TRF Tandem_Repeat 47313 47394 60 + . . scaffold40638 GLEAN mRNA 47340 47380 0.679878 - . ID=CGI_10004286; scaffold40638 TRF Tandem_Repeat 47340 47380 52 + . . scaffold40638 GLEAN mRNA 43445 43801 0.679878 - . ID=CGI_10004286; scaffold40638 WUBlastX LINE_L2 43445 43801 115 + . . scaffold40638 GLEAN mRNA 43811 44065 0.679878 - . ID=CGI_10004286; scaffold40638 WUBlastX LINE_L2 43811 44065 50 + . . scaffold40638 GLEAN mRNA 43445 43957 0.679878 - . ID=CGI_10004286; scaffold40638 WUBlastX LINE_L2 43445 43957 71 + . . scaffold40638 GLEAN mRNA 55324 56133 0.679878 - . ID=CGI_10004286; scaffold40638 WUBlastX DNA_En-Spm 55324 56133 166 - . . scaffold40638 GLEAN mRNA 55570 56475 0.679878 - . ID=CGI_10004286; scaffold40638 WUBlastX DNA_En-Spm 55570 56475 255 - . . scaffold40638 GLEAN mRNA 62301 63635 0.755375 - . ID=CGI_10004287; scaffold40638 WUBlastX LTR_Gypsy 62301 63635 296 - . . scaffold40638 GLEAN mRNA 66567 66941 0.755375 - . ID=CGI_10004287; scaffold40638 WUBlastX LTR_Gypsy-Cigr 66567 66941 148 - . . scaffold40638 GLEAN mRNA 65802 66251 0.755375 - . ID=CGI_10004287; scaffold40638 WUBlastX LTR_Gypsy 65802 66251 33 - . . scaffold40638 GLEAN mRNA 66215 66394 0.755375 - . ID=CGI_10004287; scaffold40638 WUBlastX LTR_ERVK 66215 66394 31 - . . scaffold40638 GLEAN mRNA 62523 66182 0.755375 - . ID=CGI_10004287; scaffold40638 WUBlastX LTR_Gypsy-Cigr 62523 66182 1378 - . . scaffold463 GLEAN mRNA 40468 40499 1 - . ID=CGI_10004288; scaffold463 TRF Tandem_Repeat 40468 40499 64 + . . scaffold463 GLEAN mRNA 41985 42025 1 - . ID=CGI_10004288; scaffold463 TRF Tandem_Repeat 41985 42025 82 + . . scaffold463 GLEAN mRNA 43760 43788 1 - . ID=CGI_10004288; scaffold463 TRF Tandem_Repeat 43760 43788 58 + . . scaffold463 GLEAN mRNA 43225 43698 1 - . ID=CGI_10004288; scaffold463 WUBlastX LINE_L2 43225 43698 422 - . . scaffold463 GLEAN mRNA 53021 53059 1 + . ID=CGI_10004289; scaffold463 TRF Tandem_Repeat 53021 53059 78 + . . scaffold463 GLEAN mRNA 53114 53145 1 + . ID=CGI_10004289; scaffold463 TRF Tandem_Repeat 53114 53145 64 + . . scaffold463 GLEAN mRNA 78768 78794 0.820612 - . ID=CGI_10004291; scaffold463 TRF Tandem_Repeat 78768 78794 54 + . . scaffold463 GLEAN mRNA 79554 80295 0.820612 - . ID=CGI_10004291; scaffold463 TRF Tandem_Repeat 79554 80295 735 + . . scaffold40644 GLEAN mRNA 61318 61359 0.495408 - . ID=CGI_10004304; scaffold40644 TRF Tandem_Repeat 61318 61359 57 + . . scaffold40644 GLEAN mRNA 76880 76915 0.999935 - . ID=CGI_10004306; scaffold40644 TRF Tandem_Repeat 76880 76915 63 + . . scaffold40644 GLEAN mRNA 77544 77575 0.999935 - . ID=CGI_10004306; scaffold40644 TRF Tandem_Repeat 77544 77575 55 + . . scaffold40644 GLEAN mRNA 77667 77768 0.999935 - . ID=CGI_10004306; scaffold40644 WUBlastX LINE_Penelope 77667 77867 41 + . . scaffold1454 GLEAN mRNA 9701 9750 0.999999 - . ID=CGI_10004310; scaffold1454 TRF Tandem_Repeat 9701 9750 100 + . . scaffold1454 GLEAN mRNA 8764 9120 0.999999 - . ID=CGI_10004310; scaffold1454 WUBlastX DNA_TcMar-Tc1 8764 9120 37 - . . scaffold1454 GLEAN mRNA 8740 9048 0.999999 - . ID=CGI_10004310; scaffold1454 WUBlastX DNA_TcMar-Tc1 8740 9048 39 - . . scaffold1454 GLEAN mRNA 55871 56437 0.570116 - . ID=CGI_10004313; scaffold1454 WUBlastX RC_Helitron 55871 56437 240 - . . scaffold1454 GLEAN mRNA 55964 56632 0.570116 - . ID=CGI_10004313; scaffold1454 WUBlastX DNA_Helitron 55964 56632 268 - . . scaffold1454 GLEAN mRNA 63934 64416 0.838276 - . ID=CGI_10004314; scaffold1454 WUBlastX DNA_Zator 63934 64416 113 - . . scaffold1454 GLEAN mRNA 66359 66406 0.838276 - . ID=CGI_10004314; scaffold1454 WUBlastX LTR_ERV1 66359 66406 28 - . . scaffold1454 GLEAN mRNA 66350 66406 0.838276 - . ID=CGI_10004314; scaffold1454 WUBlastX LTR_ERV1 66350 66406 26 - . . scaffold1454 GLEAN mRNA 66278 66556 0.838276 - . ID=CGI_10004314; scaffold1454 WUBlastX LTR_ERV1 66278 66556 23 - . . scaffold409 GLEAN mRNA 59293 59337 0.990811 + . ID=CGI_10004317; scaffold409 TRF Tandem_Repeat 59293 59337 90 + . . scaffold409 GLEAN mRNA 60209 60439 0.990811 + . ID=CGI_10004317; scaffold409 WUBlastX DNA_TcMar-Marin 60209 60439 57 + . . scaffold409 GLEAN mRNA 60242 60427 0.990811 + . ID=CGI_10004317; scaffold409 WUBlastX DNA_TcMar-Marin 60242 60427 96 + . . scaffold409 GLEAN mRNA 60555 60911 0.990811 + . ID=CGI_10004317; scaffold409 WUBlastX DNA_TcMar-Marin 60555 60911 168 + . . scaffold409 GLEAN mRNA 61093 61497 0.990811 + . ID=CGI_10004317; scaffold409 WUBlastX DNA_TcMar-Marin 61093 61497 234 + . . scaffold409 GLEAN mRNA 60454 60624 0.990811 + . ID=CGI_10004317; scaffold409 WUBlastX DNA_TcMar-Marin 60454 60624 74 + . . scaffold409 GLEAN mRNA 60615 60902 0.990811 + . ID=CGI_10004317; scaffold409 WUBlastX DNA_TcMar-Marin 60615 60902 191 + . . scaffold409 GLEAN mRNA 72288 72653 1 + . ID=CGI_10004318; scaffold409 TRF Tandem_Repeat 72288 72653 570 + . . scaffold409 GLEAN mRNA 90440 90481 0.642495 - . ID=CGI_10004319; scaffold409 TRF Tandem_Repeat 90440 90481 84 + . . scaffold409 GLEAN mRNA 84136 84660 0.642495 - . ID=CGI_10004319; scaffold409 WUBlastX LTR_Gypsy 84136 84660 29 - . . scaffold834 GLEAN mRNA 84407 84442 0.493914 + . ID=CGI_10004322; scaffold834 TRF Tandem_Repeat 84407 84442 72 + . . scaffold834 GLEAN mRNA 81618 81956 0.493914 + . ID=CGI_10004322; scaffold834 WUBlastX LINE_RTE-X 81618 81956 76 - . . scaffold1250 GLEAN mRNA 53147 53185 0.483157 - . ID=CGI_10004325; scaffold1250 TRF Tandem_Repeat 53147 53185 51 + . . scaffold1250 GLEAN mRNA 62009 62037 0.483157 - . ID=CGI_10004325; scaffold1250 TRF Tandem_Repeat 62009 62037 58 + . . scaffold1250 GLEAN mRNA 67527 67570 0.483157 - . ID=CGI_10004325; scaffold1250 TRF Tandem_Repeat 67527 67570 70 + . . scaffold839 GLEAN mRNA 41547 41784 0.806328 + . ID=CGI_10004335; scaffold839 TRF Tandem_Repeat 41547 41784 383 + . . scaffold839 GLEAN mRNA 42256 42308 0.806328 + . ID=CGI_10004335; scaffold839 TRF Tandem_Repeat 42256 42308 106 + . . scaffold839 GLEAN mRNA 81795 81833 0.999546 - . ID=CGI_10004337; scaffold839 TRF Tandem_Repeat 81795 81833 78 + . . scaffold839 GLEAN mRNA 83778 84014 0.999546 - . ID=CGI_10004337; scaffold839 WUBlastX LINE_L1-Tx1 83778 84014 53 - . . scaffold839 GLEAN mRNA 86449 86703 0.999546 - . ID=CGI_10004337; scaffold839 WUBlastX LINE_L1 86449 86703 104 - . . scaffold839 GLEAN mRNA 86311 86733 0.999546 - . ID=CGI_10004337; scaffold839 WUBlastX LINE_L1 86311 86733 56 - . . scaffold839 GLEAN mRNA 84118 85494 0.999546 - . ID=CGI_10004337; scaffold839 WUBlastX LINE_L1-Tx1 84118 85494 666 - . . scaffold839 GLEAN mRNA 86717 87676 0.999546 - . ID=CGI_10004337; scaffold839 WUBlastX LINE_L1-Tx1 86717 87676 185 - . . scaffold839 GLEAN mRNA 83778 84098 0.999546 - . ID=CGI_10004337; scaffold839 WUBlastX LINE_L1-Tx1 83778 84098 20 - . . scaffold905 GLEAN mRNA 4527 4946 0.840832 + . ID=CGI_10004338; scaffold905 WUBlastX LINE_L1-Tx1 4527 4946 83 + . . scaffold905 GLEAN mRNA 4952 5692 0.840832 + . ID=CGI_10004338; scaffold905 WUBlastX LINE_L1-Tx1 4952 5692 304 + . . scaffold905 GLEAN mRNA 5805 5924 0.840832 + . ID=CGI_10004338; scaffold905 WUBlastX LINE_L1-Tx1 5805 5924 38 + . . scaffold905 GLEAN mRNA 4952 5833 0.840832 + . ID=CGI_10004338; scaffold905 WUBlastX LINE_L1 4952 5833 87 + . . scaffold905 GLEAN mRNA 5787 6419 0.840832 + . ID=CGI_10004338; scaffold905 WUBlastX LINE_L1 5787 6419 30 + . . scaffold905 GLEAN mRNA 4707 4940 0.840832 + . ID=CGI_10004338; scaffold905 WUBlastX LINE_L1 4707 4940 116 + . . scaffold905 GLEAN mRNA 3570 3725 0.840832 + . ID=CGI_10004338; scaffold905 WUBlastX LINE_L1-Tx1 3570 3725 31 + . . scaffold905 GLEAN mRNA 3747 3902 0.840832 + . ID=CGI_10004338; scaffold905 WUBlastX LINE_R2 3747 3902 22 + . . scaffold1266 GLEAN mRNA 31428 31463 1 - . ID=CGI_10004344; scaffold1266 TRF Tandem_Repeat 31428 31463 72 + . . scaffold1801 GLEAN mRNA 4412 5649 0.629869 + . ID=CGI_10004347; scaffold1801 TRF Tandem_Repeat 4412 5649 1534 + . . scaffold1801 GLEAN mRNA 6446 6498 0.629869 + . ID=CGI_10004347; scaffold1801 TRF Tandem_Repeat 6446 6498 88 + . . scaffold1801 GLEAN mRNA 6446 6501 0.629869 + . ID=CGI_10004347; scaffold1801 TRF Tandem_Repeat 6446 6501 58 + . . scaffold1801 GLEAN mRNA 6446 6501 0.629869 + . ID=CGI_10004347; scaffold1801 TRF Tandem_Repeat 6446 6501 76 + . . scaffold1801 GLEAN mRNA 19559 19598 0.459021 + . ID=CGI_10004348; scaffold1801 TRF Tandem_Repeat 19559 19598 62 + . . scaffold1801 GLEAN mRNA 25672 25699 0.459021 + . ID=CGI_10004348; scaffold1801 TRF Tandem_Repeat 25672 25699 56 + . . scaffold1801 GLEAN mRNA 93552 93604 0.923877 + . ID=CGI_10004350; scaffold1801 TRF Tandem_Repeat 93552 93604 106 + . . scaffold1380 GLEAN mRNA 94660 94774 1 + . ID=CGI_10004352; scaffold1380 TRF Tandem_Repeat 94660 94774 178 + . . scaffold40680 GLEAN mRNA 11135 11290 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX DNA_TcMar-Tc1 11135 11290 69 + . . scaffold40680 GLEAN mRNA 10887 10997 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX DNA_TcMar-Tc1 10887 10997 30 + . . scaffold40680 GLEAN mRNA 10821 10985 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX DNA_TcMar-Tc1 10821 10985 25 + . . scaffold40680 GLEAN mRNA 11478 11777 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX DNA_TcMar-Tc1 11478 11777 155 + . . scaffold40680 GLEAN mRNA 19564 20660 0.246623 - . ID=CGI_10004353; scaffold40680 TRF Tandem_Repeat 19564 20660 1486 + . . scaffold40680 GLEAN mRNA 19565 20660 0.246623 - . ID=CGI_10004353; scaffold40680 TRF Tandem_Repeat 19565 20660 1721 + . . scaffold40680 GLEAN mRNA 19565 20660 0.246623 - . ID=CGI_10004353; scaffold40680 TRF Tandem_Repeat 19565 20660 1687 + . . scaffold40680 GLEAN mRNA 22160 22980 0.246623 - . ID=CGI_10004353; scaffold40680 TRF Tandem_Repeat 22160 22980 1080 + . . scaffold40680 GLEAN mRNA 27418 27699 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX DNA_Harbinger 27418 27699 219 + . . scaffold40680 GLEAN mRNA 27847 28113 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX DNA_Harbinger 27847 28113 40 + . . scaffold40680 GLEAN mRNA 27337 27693 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX DNA_Harbinger 27337 27693 144 + . . scaffold40680 GLEAN mRNA 29826 30113 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX DNA_En-Spm 29826 30113 107 - . . scaffold40680 GLEAN mRNA 29847 30188 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX DNA_En-Spm 29847 30188 100 - . . scaffold40680 GLEAN mRNA 25006 25263 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX DNA_Harbinger 25006 25263 46 + . . scaffold40680 GLEAN mRNA 27042 27329 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX DNA_Harbinger 27042 27329 132 + . . scaffold40680 GLEAN mRNA 25006 25194 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX DNA_Harbinger 25006 25194 53 + . . scaffold40680 GLEAN mRNA 35810 36535 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX LTR_Copia 35810 36535 92 + . . scaffold40680 GLEAN mRNA 34490 36340 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX LTR_Gypsy 34490 36340 1880 + . . scaffold40680 GLEAN mRNA 27418 27699 0.500588 + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27418 27699 219 + . . scaffold40680 GLEAN mRNA 27847 28113 0.500588 + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27847 28113 40 + . . scaffold40680 GLEAN mRNA 27337 27693 0.500588 + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27337 27693 144 + . . scaffold40680 GLEAN mRNA 27135 27329 0.500588 + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27042 27329 132 + . . scaffold40680 GLEAN mRNA 46878 47024 0.545835 - . ID=CGI_10004355; scaffold40680 WUBlastX DNA 46878 47024 32 - . . scaffold398 GLEAN mRNA 3457 3918 0.911211 + . ID=CGI_10004360; scaffold398 WUBlastX LINE_CR1-L2 3457 3918 156 - . . scaffold398 GLEAN mRNA 4743 4859 0.911211 + . ID=CGI_10004360; scaffold398 WUBlastX LINE_L1 4743 4859 22 - . . scaffold398 GLEAN mRNA 4231 4593 0.911211 + . ID=CGI_10004360; scaffold398 WUBlastX LINE_CR1 4231 4593 83 - . . scaffold398 GLEAN mRNA 3466 4479 0.911211 + . ID=CGI_10004360; scaffold398 WUBlastX LINE_Jockey 3466 4479 128 - . . scaffold398 GLEAN mRNA 2887 3078 0.911211 + . ID=CGI_10004360; scaffold398 WUBlastX LINE_Jockey 2887 3078 21 - . . scaffold398 GLEAN mRNA 4767 4877 0.911211 + . ID=CGI_10004360; scaffold398 WUBlastX LINE_L2 4767 4877 20 - . . scaffold398 GLEAN mRNA 4231 4722 0.911211 + . ID=CGI_10004360; scaffold398 WUBlastX LINE_CR1 4231 4722 31 - . . scaffold398 GLEAN mRNA 4764 4853 0.911211 + . ID=CGI_10004360; scaffold398 WUBlastX LINE_L2 4764 4853 27 - . . scaffold398 GLEAN mRNA 3274 3912 0.911211 + . ID=CGI_10004360; scaffold398 WUBlastX LINE_L1 3274 3912 53 - . . scaffold398 GLEAN mRNA 2935 4602 0.911211 + . ID=CGI_10004360; scaffold398 WUBlastX LINE_L2-Hydra 2935 4602 46 - . . scaffold398 GLEAN mRNA 46561 46635 0.999674 + . ID=CGI_10004361; scaffold398 TRF Tandem_Repeat 46561 46635 143 + . . scaffold398 GLEAN mRNA 43468 43722 0.999674 + . ID=CGI_10004361; scaffold398 WUBlastX LINE_RTE-X 43468 43722 106 - . . scaffold398 GLEAN mRNA 43441 43779 0.999674 + . ID=CGI_10004361; scaffold398 WUBlastX LINE_RTE-X 43441 43779 63 - . . scaffold398 GLEAN mRNA 43372 43683 0.999674 + . ID=CGI_10004361; scaffold398 WUBlastX LINE_RTE-X 43372 43683 111 - . . scaffold398 GLEAN mRNA 75993 76032 0.946816 + . ID=CGI_10004362; scaffold398 TRF Tandem_Repeat 75993 76032 80 + . . scaffold398 GLEAN mRNA 81221 81281 0.946816 + . ID=CGI_10004362; scaffold398 TRF Tandem_Repeat 81221 81281 77 + . . scaffold398 GLEAN mRNA 85754 85805 0.999612 + . ID=CGI_10004363; scaffold398 TRF Tandem_Repeat 85754 85805 50 + . . scaffold398 GLEAN mRNA 85974 87328 0.999612 + . ID=CGI_10004363; scaffold398 TRF Tandem_Repeat 85974 87328 1564 + . . scaffold398 GLEAN mRNA 91580 91736 1 - . ID=CGI_10004364; scaffold398 TRF Tandem_Repeat 91580 91736 172 + . . scaffold398 GLEAN mRNA 95675 95733 1 - . ID=CGI_10004364; scaffold398 TRF Tandem_Repeat 95675 95733 118 + . . scaffold40744 GLEAN mRNA 22752 22844 0.544464 + . ID=CGI_10004375; scaffold40744 TRF Tandem_Repeat 22752 22844 66 + . . scaffold40744 GLEAN mRNA 22727 23385 0.544464 + . ID=CGI_10004375; scaffold40744 TRF Tandem_Repeat 22727 23385 783 + . . scaffold40744 GLEAN mRNA 22794 23359 0.544464 + . ID=CGI_10004375; scaffold40744 TRF Tandem_Repeat 22794 23359 97 + . . scaffold40744 GLEAN mRNA 91092 91934 0.882871 + . ID=CGI_10004380; scaffold40744 WUBlastX LINE_L1-Tx1 91092 91934 82 + . . scaffold1771 GLEAN mRNA 1823 1863 1 + . ID=CGI_10004381; scaffold1771 TRF Tandem_Repeat 1823 1863 82 + . . scaffold1771 GLEAN mRNA 25104 25311 0.998608 - . ID=CGI_10004384; scaffold1771 TRF Tandem_Repeat 25104 25311 199 + . . scaffold1771 GLEAN mRNA 29987 30577 0.998608 - . ID=CGI_10004384; scaffold1771 TRF Tandem_Repeat 29987 30577 993 + . . scaffold1771 GLEAN mRNA 32078 32262 0.998608 - . ID=CGI_10004384; scaffold1771 TRF Tandem_Repeat 32078 32262 144 + . . scaffold1771 GLEAN mRNA 43160 43573 0.998608 - . ID=CGI_10004384; scaffold1771 WUBlastX DNA_TcMar-Tc2 43160 43573 96 + . . scaffold1771 GLEAN mRNA 49270 49580 0.839258 - . ID=CGI_10004385; scaffold1771 TRF Tandem_Repeat 49270 49580 541 + . . scaffold1771 GLEAN mRNA 56970 57153 0.839258 - . ID=CGI_10004385; scaffold1771 TRF Tandem_Repeat 56970 57153 268 + . . scaffold1771 GLEAN mRNA 56964 57246 0.839258 - . ID=CGI_10004385; scaffold1771 TRF Tandem_Repeat 56964 57246 106 + . . scaffold1771 GLEAN mRNA 57479 57667 0.839258 - . ID=CGI_10004385; scaffold1771 TRF Tandem_Repeat 57479 57667 360 + . . scaffold1771 GLEAN mRNA 89006 89150 0.521534 - . ID=CGI_10004387; scaffold1771 TRF Tandem_Repeat 89006 89150 121 + . . scaffold1771 GLEAN mRNA 90200 91474 0.521534 - . ID=CGI_10004387; scaffold1771 WUBlastX LTR_Gypsy 90200 91474 505 - . . scaffold1771 GLEAN mRNA 94132 94944 0.521534 - . ID=CGI_10004387; scaffold1771 WUBlastX LTR_Gypsy 94132 94944 139 - . . scaffold1771 GLEAN mRNA 94348 95061 0.521534 - . ID=CGI_10004387; scaffold1771 WUBlastX LTR_Gypsy 94348 95061 72 - . . scaffold1771 GLEAN mRNA 94273 95229 0.521534 - . ID=CGI_10004387; scaffold1771 WUBlastX LTR_Gypsy 94273 95229 48 - . . scaffold1771 GLEAN mRNA 94102 94188 0.521534 - . ID=CGI_10004387; scaffold1771 WUBlastX LTR_Gypsy 94102 94188 22 - . . scaffold1771 GLEAN mRNA 90425 94066 0.521534 - . ID=CGI_10004387; scaffold1771 WUBlastX LTR_Gypsy-Cigr 90425 94066 1830 - . . scaffold1771 GLEAN mRNA 94387 94953 0.521534 - . ID=CGI_10004387; scaffold1771 WUBlastX LTR_Gypsy-Cigr 94387 94953 151 - . . scaffold1431 GLEAN mRNA 78532 79359 0.836016 - . ID=CGI_10004391; scaffold1431 WUBlastX DNA_Sola 78532 79359 187 - . . scaffold1431 GLEAN mRNA 79483 80232 0.836016 - . ID=CGI_10004391; scaffold1431 WUBlastX DNA_Sola 79483 80364 35 - . . scaffold40740 GLEAN mRNA 10555 10597 0.997343 - . ID=CGI_10004394; scaffold40740 TRF Tandem_Repeat 10555 10597 86 + . . scaffold40740 GLEAN mRNA 13532 13652 0.997343 - . ID=CGI_10004394; scaffold40740 TRF Tandem_Repeat 13532 13652 86 + . . scaffold40740 GLEAN mRNA 13773 13922 0.997343 - . ID=CGI_10004394; scaffold40740 TRF Tandem_Repeat 13773 13922 63 + . . scaffold40740 GLEAN mRNA 37164 37191 1 - . ID=CGI_10004395; scaffold40740 TRF Tandem_Repeat 37164 37191 56 + . . scaffold40740 GLEAN mRNA 38506 38543 1 - . ID=CGI_10004395; scaffold40740 TRF Tandem_Repeat 38506 38543 51 + . . scaffold40740 GLEAN mRNA 71838 72092 0.282731 - . ID=CGI_10004398; scaffold40740 WUBlastX LINE_RTE-X 71838 72092 36 - . . scaffold1747 GLEAN mRNA 42719 42883 1 + . ID=CGI_10004400; scaffold1747 WUBlastX DNA_PiggyBac 42719 42883 36 + . . scaffold1747 GLEAN mRNA 74640 75063 1 - . ID=CGI_10004402; scaffold1747 TRF Tandem_Repeat 74640 75063 533 + . . scaffold127 GLEAN mRNA 37442 37502 0.997324 + . ID=CGI_10004404; scaffold127 TRF Tandem_Repeat 37442 37502 50 + . . scaffold127 GLEAN mRNA 37574 37637 0.997324 + . ID=CGI_10004404; scaffold127 TRF Tandem_Repeat 37574 37637 58 + . . scaffold127 GLEAN mRNA 37574 37660 0.997324 + . ID=CGI_10004404; scaffold127 TRF Tandem_Repeat 37574 37660 77 + . . scaffold127 GLEAN mRNA 38148 38186 0.997324 + . ID=CGI_10004404; scaffold127 TRF Tandem_Repeat 38148 38186 78 + . . scaffold127 GLEAN mRNA 39211 39251 0.997324 + . ID=CGI_10004404; scaffold127 TRF Tandem_Repeat 39211 39251 82 + . . scaffold127 GLEAN mRNA 39440 39480 0.997324 + . ID=CGI_10004404; scaffold127 TRF Tandem_Repeat 39440 39480 73 + . . scaffold127 GLEAN mRNA 40200 40286 0.997324 + . ID=CGI_10004404; scaffold127 TRF Tandem_Repeat 40200 40286 86 + . . scaffold127 GLEAN mRNA 40359 40419 0.997324 + . ID=CGI_10004404; scaffold127 TRF Tandem_Repeat 40359 40419 50 + . . scaffold127 GLEAN mRNA 42125 42161 0.997324 + . ID=CGI_10004404; scaffold127 TRF Tandem_Repeat 42125 42161 67 + . . scaffold127 GLEAN mRNA 76934 77515 0.841401 + . ID=CGI_10004407; scaffold127 WUBlastX DNA_Crypton 76934 77515 94 + . . scaffold1854 GLEAN mRNA 21096 21473 0.727692 - . ID=CGI_10004409; scaffold1854 WUBlastX LTR_Ngaro 21096 21473 140 - . . scaffold1854 GLEAN mRNA 20882 21055 0.727692 - . ID=CGI_10004409; scaffold1854 WUBlastX LTR_Ngaro 20882 21055 109 - . . scaffold1854 GLEAN mRNA 21132 21665 0.727692 - . ID=CGI_10004409; scaffold1854 WUBlastX LTR_Ngaro 21132 21665 127 - . . scaffold1536 GLEAN mRNA 70098 70188 0.779284 + . ID=CGI_10004415; scaffold1536 TRF Tandem_Repeat 70098 70188 123 + . . scaffold1536 GLEAN mRNA 74250 75329 0.779284 + . ID=CGI_10004415; scaffold1536 TRF Tandem_Repeat 74250 75329 1786 + . . scaffold1536 GLEAN mRNA 78821 78853 0.779284 + . ID=CGI_10004415; scaffold1536 TRF Tandem_Repeat 78821 78853 50 + . . scaffold1536 GLEAN mRNA 79974 80505 0.779284 + . ID=CGI_10004415; scaffold1536 TRF Tandem_Repeat 79974 80505 603 + . . scaffold1536 GLEAN mRNA 82474 83420 0.779284 + . ID=CGI_10004415; scaffold1536 TRF Tandem_Repeat 82474 83420 1390 + . . scaffold1536 GLEAN mRNA 84834 84873 0.779284 + . ID=CGI_10004415; scaffold1536 TRF Tandem_Repeat 84834 84873 62 + . . scaffold1230 GLEAN mRNA 26185 26921 0.55469 - . ID=CGI_10004422; scaffold1230 TRF Tandem_Repeat 26185 26921 818 + . . scaffold1230 GLEAN mRNA 31546 31580 0.55469 - . ID=CGI_10004422; scaffold1230 TRF Tandem_Repeat 31546 31580 54 + . . scaffold1230 GLEAN mRNA 32020 32052 0.55469 - . ID=CGI_10004422; scaffold1230 TRF Tandem_Repeat 32020 32052 66 + . . scaffold1230 GLEAN mRNA 47984 48008 0.55469 - . ID=CGI_10004422; scaffold1230 TRF Tandem_Repeat 47984 48008 50 + . . scaffold1230 GLEAN mRNA 63646 64101 0.514803 - . ID=CGI_10004423; scaffold1230 WUBlastX LINE_L1-Tx1 63646 64101 384 + . . scaffold1230 GLEAN mRNA 63571 64017 0.514803 - . ID=CGI_10004423; scaffold1230 WUBlastX LINE_L1 63571 64017 72 + . . scaffold1230 GLEAN mRNA 79294 79353 0.514803 - . ID=CGI_10004423; scaffold1230 TRF Tandem_Repeat 79294 79353 120 + . . scaffold1230 GLEAN mRNA 82383 82446 0.514803 - . ID=CGI_10004423; scaffold1230 TRF Tandem_Repeat 82383 82446 92 + . . scaffold1230 GLEAN mRNA 63646 64101 0.544345 + . ID=CGI_10004424; scaffold1230 WUBlastX LINE_L1-Tx1 63646 64101 384 + . . scaffold1230 GLEAN mRNA 63571 64017 0.544345 + . ID=CGI_10004424; scaffold1230 WUBlastX LINE_L1 63571 64017 72 + . . scaffold451 GLEAN mRNA 64255 64506 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Copia 64255 64506 36 + . . scaffold451 GLEAN mRNA 63260 63817 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy-Cigr 63260 63817 49 + . . scaffold451 GLEAN mRNA 63215 63703 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy-Cigr 63215 63703 68 + . . scaffold451 GLEAN mRNA 63980 64261 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy 63980 64261 56 + . . scaffold451 GLEAN mRNA 63962 64027 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy 63962 64027 20 + . . scaffold451 GLEAN mRNA 66854 67153 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy 66854 67153 120 + . . scaffold451 GLEAN mRNA 66730 66807 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy 66730 66807 36 + . . scaffold451 GLEAN mRNA 66788 67033 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy 66788 67033 43 + . . scaffold451 GLEAN mRNA 66845 67234 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy 66845 67234 89 + . . scaffold451 GLEAN mRNA 66694 66807 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy 66694 66807 31 + . . scaffold451 GLEAN mRNA 67470 67535 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy 67470 67535 20 + . . scaffold451 GLEAN mRNA 66854 67369 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy 66854 67369 85 + . . scaffold451 GLEAN mRNA 87696 88256 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LINE_L1 87696 88256 54 + . . scaffold451 GLEAN mRNA 88494 88589 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LINE_L1-Tx1 88494 88589 26 + . . scaffold451 GLEAN mRNA 87696 88574 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LINE_L1-Tx1 87696 88574 24 + . . scaffold451 GLEAN mRNA 87681 87845 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LINE_L1 87681 87845 62 + . . scaffold451 GLEAN mRNA 64759 66339 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy 64759 66339 1022 + . . scaffold451 GLEAN mRNA 64351 66273 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy 64351 66273 1003 + . . scaffold1864 GLEAN mRNA 12856 12904 0.4583 - . ID=CGI_10004428; scaffold1864 TRF Tandem_Repeat 12856 12904 62 + . . scaffold1864 GLEAN mRNA 31014 31196 0.552482 - . ID=CGI_10004430; scaffold1864 WUBlastX LINE_RTE-X 31014 31196 32 - . . scaffold1864 GLEAN mRNA 44940 44975 0.999999 + . ID=CGI_10004431; scaffold1864 TRF Tandem_Repeat 44940 44975 54 + . . scaffold1864 GLEAN mRNA 80220 80270 1 - . ID=CGI_10004433; scaffold1864 TRF Tandem_Repeat 80220 80270 102 + . . scaffold40874 GLEAN mRNA 34135 34168 0.729144 + . ID=CGI_10004437; scaffold40874 TRF Tandem_Repeat 34135 34168 68 + . . scaffold40874 GLEAN mRNA 37988 38027 0.729144 + . ID=CGI_10004437; scaffold40874 TRF Tandem_Repeat 37988 38027 57 + . . scaffold40874 GLEAN mRNA 44103 44165 0.729144 + . ID=CGI_10004437; scaffold40874 TRF Tandem_Repeat 44103 44165 81 + . . scaffold40874 GLEAN mRNA 44112 44165 0.729144 + . ID=CGI_10004437; scaffold40874 TRF Tandem_Repeat 44112 44165 90 + . . scaffold40874 GLEAN mRNA 50771 51697 0.729144 + . ID=CGI_10004437; scaffold40874 TRF Tandem_Repeat 50771 51697 1746 + . . scaffold40874 GLEAN mRNA 55387 55589 0.729144 + . ID=CGI_10004437; scaffold40874 TRF Tandem_Repeat 55387 55589 304 + . . scaffold40874 GLEAN mRNA 56601 57279 0.729144 + . ID=CGI_10004437; scaffold40874 TRF Tandem_Repeat 56601 57279 861 + . . scaffold40874 GLEAN mRNA 63124 63645 0.729144 + . ID=CGI_10004437; scaffold40874 TRF Tandem_Repeat 63124 63645 614 + . . scaffold40874 GLEAN mRNA 63124 63650 0.729144 + . ID=CGI_10004437; scaffold40874 TRF Tandem_Repeat 63124 63650 594 + . . scaffold40874 GLEAN mRNA 66631 68383 0.729144 + . ID=CGI_10004437; scaffold40874 TRF Tandem_Repeat 66631 68383 2986 + . . scaffold40874 GLEAN mRNA 70106 70847 0.188483 + . ID=CGI_10004438; scaffold40874 TRF Tandem_Repeat 70106 70847 1385 + . . scaffold40874 GLEAN mRNA 72849 72896 0.188483 + . ID=CGI_10004438; scaffold40874 TRF Tandem_Repeat 72849 72896 69 + . . scaffold40874 GLEAN mRNA 77450 77906 0.188483 + . ID=CGI_10004438; scaffold40874 TRF Tandem_Repeat 77450 77906 779 + . . scaffold40874 GLEAN mRNA 79832 79918 0.188483 + . ID=CGI_10004438; scaffold40874 TRF Tandem_Repeat 79832 79918 77 + . . scaffold40874 GLEAN mRNA 80491 80928 0.188483 + . ID=CGI_10004438; scaffold40874 WUBlastX LINE_L1-Tx1 80491 80928 132 - . . scaffold40874 GLEAN mRNA 89615 89679 0.188483 + . ID=CGI_10004438; scaffold40874 TRF Tandem_Repeat 89615 89679 130 + . . scaffold40874 GLEAN mRNA 89965 89999 0.188483 + . ID=CGI_10004438; scaffold40874 TRF Tandem_Repeat 89965 89999 70 + . . scaffold40874 GLEAN mRNA 91048 92702 0.188483 + . ID=CGI_10004438; scaffold40874 TRF Tandem_Repeat 91048 92702 2007 + . . scaffold40874 GLEAN mRNA 96666 96828 0.188483 + . ID=CGI_10004438; scaffold40874 TRF Tandem_Repeat 96666 96828 251 + . . scaffold40786 GLEAN mRNA 7257 8423 0.999999 + . ID=CGI_10004439; scaffold40786 WUBlastX LINE_L2 7206 8423 618 + . . scaffold40786 GLEAN mRNA 7257 7763 0.999999 + . ID=CGI_10004439; scaffold40786 WUBlastX LINE_L2 7035 7763 128 + . . scaffold40786 GLEAN mRNA 26001 26086 0.650709 + . ID=CGI_10004440; scaffold40786 TRF Tandem_Repeat 26001 26086 172 + . . scaffold40786 GLEAN mRNA 28861 28982 0.650709 + . ID=CGI_10004440; scaffold40786 TRF Tandem_Repeat 28861 28982 149 + . . scaffold40786 GLEAN mRNA 38557 38609 0.650709 + . ID=CGI_10004440; scaffold40786 TRF Tandem_Repeat 38557 38609 106 + . . scaffold40786 GLEAN mRNA 41572 41676 0.650709 + . ID=CGI_10004440; scaffold40786 WUBlastX LINE_L2 41572 41676 23 + . . scaffold40786 GLEAN mRNA 41639 42004 0.650709 + . ID=CGI_10004440; scaffold40786 WUBlastX LINE_L2 41639 42037 113 + . . scaffold1515 GLEAN mRNA 38980 39244 0.999676 - . ID=CGI_10004443; scaffold1515 TRF Tandem_Repeat 38980 39244 232 + . . scaffold40808 GLEAN mRNA 4540 4580 0.998547 + . ID=CGI_10004446; scaffold40808 TRF Tandem_Repeat 4540 4580 82 + . . scaffold40808 GLEAN mRNA 5676 5731 0.998547 + . ID=CGI_10004446; scaffold40808 TRF Tandem_Repeat 5676 5731 112 + . . scaffold40808 GLEAN mRNA 14274 14340 0.998547 + . ID=CGI_10004446; scaffold40808 TRF Tandem_Repeat 14274 14340 62 + . . scaffold40808 GLEAN mRNA 14274 14340 0.998547 + . ID=CGI_10004446; scaffold40808 TRF Tandem_Repeat 14274 14340 73 + . . scaffold40808 GLEAN mRNA 16409 16472 0.998547 + . ID=CGI_10004446; scaffold40808 TRF Tandem_Repeat 16409 16472 128 + . . scaffold40808 GLEAN mRNA 16650 16688 0.998547 + . ID=CGI_10004446; scaffold40808 TRF Tandem_Repeat 16650 16688 78 + . . scaffold40808 GLEAN mRNA 17198 17264 0.998547 + . ID=CGI_10004446; scaffold40808 TRF Tandem_Repeat 17198 17264 53 + . . scaffold40808 GLEAN mRNA 30276 30321 0.998547 + . ID=CGI_10004446; scaffold40808 TRF Tandem_Repeat 30276 30321 92 + . . scaffold40808 GLEAN mRNA 89152 89252 0.969748 - . ID=CGI_10004448; scaffold40808 TRF Tandem_Repeat 89152 89252 148 + . . scaffold40832 GLEAN mRNA 6295 6373 0.382695 + . ID=CGI_10004451; scaffold40832 TRF Tandem_Repeat 6295 6373 108 + . . scaffold40832 GLEAN mRNA 8065 8126 0.382695 + . ID=CGI_10004451; scaffold40832 TRF Tandem_Repeat 8065 8126 115 + . . scaffold40832 GLEAN mRNA 15427 15478 0.562409 + . ID=CGI_10004452; scaffold40832 TRF Tandem_Repeat 15427 15478 68 + . . scaffold40832 GLEAN mRNA 15427 15478 0.562409 + . ID=CGI_10004452; scaffold40832 TRF Tandem_Repeat 15427 15478 68 + . . scaffold40832 GLEAN mRNA 15427 15478 0.562409 + . ID=CGI_10004452; scaffold40832 TRF Tandem_Repeat 15427 15478 68 + . . scaffold40832 GLEAN mRNA 17523 17555 0.562409 + . ID=CGI_10004452; scaffold40832 TRF Tandem_Repeat 17523 17555 57 + . . scaffold40832 GLEAN mRNA 18172 18205 0.562409 + . ID=CGI_10004452; scaffold40832 TRF Tandem_Repeat 18172 18205 68 + . . scaffold40832 GLEAN mRNA 27255 27296 1 + . ID=CGI_10004453; scaffold40832 TRF Tandem_Repeat 27255 27296 84 + . . scaffold40832 GLEAN mRNA 79819 81663 0.350561 + . ID=CGI_10004457; scaffold40832 WUBlastX LINE_RTE-X 79819 81663 840 - . . scaffold40832 GLEAN mRNA 79602 79667 0.350561 + . ID=CGI_10004457; scaffold40832 WUBlastX LINE_I 79602 79667 23 - . . scaffold40832 GLEAN mRNA 81845 81904 0.350561 + . ID=CGI_10004457; scaffold40832 WUBlastX LINE_RTE-BovB 81845 81904 25 - . . scaffold40832 GLEAN mRNA 82561 82635 0.350561 + . ID=CGI_10004457; scaffold40832 WUBlastX LINE_L1-Tx1 82561 82635 23 - . . scaffold40832 GLEAN mRNA 82546 82632 0.350561 + . ID=CGI_10004457; scaffold40832 WUBlastX LINE_RTE-X 82546 82632 22 - . . scaffold40832 GLEAN mRNA 89172 89224 1 + . ID=CGI_10004459; scaffold40832 TRF Tandem_Repeat 89172 89224 70 + . . scaffold686 GLEAN mRNA 3812 3857 0.998023 - . ID=CGI_10004460; scaffold686 TRF Tandem_Repeat 3812 3857 67 + . . scaffold686 GLEAN mRNA 3807 3860 0.998023 - . ID=CGI_10004460; scaffold686 TRF Tandem_Repeat 3807 3860 67 + . . scaffold686 GLEAN mRNA 4144 4542 0.998023 - . ID=CGI_10004460; scaffold686 TRF Tandem_Repeat 4144 4542 460 + . . scaffold686 GLEAN mRNA 4186 4517 0.998023 - . ID=CGI_10004460; scaffold686 TRF Tandem_Repeat 4186 4517 473 + . . scaffold686 GLEAN mRNA 4144 4474 0.998023 - . ID=CGI_10004460; scaffold686 TRF Tandem_Repeat 4144 4474 457 + . . scaffold686 GLEAN mRNA 2521 2796 0.998023 - . ID=CGI_10004460; scaffold686 WUBlastX LINE_CR1-L2 2521 2796 108 - . . scaffold686 GLEAN mRNA 2584 2964 0.998023 - . ID=CGI_10004460; scaffold686 WUBlastX LINE_CR1-L2 2584 2964 93 - . . scaffold686 GLEAN mRNA 2581 2892 0.998023 - . ID=CGI_10004460; scaffold686 WUBlastX LINE_CR1-L2 2581 2892 129 - . . scaffold686 GLEAN mRNA 9588 9677 0.993892 - . ID=CGI_10004461; scaffold686 TRF Tandem_Repeat 9588 9677 153 + . . scaffold686 GLEAN mRNA 12223 12687 0.993892 - . ID=CGI_10004461; scaffold686 WUBlastX DNA_TcMar-Tc1 12223 12687 244 + . . scaffold686 GLEAN mRNA 15977 16336 0.993892 - . ID=CGI_10004461; scaffold686 WUBlastX LINE_L1-Tx1 15977 16336 39 - . . scaffold686 GLEAN mRNA 31889 32035 0.50665 - . ID=CGI_10004462; scaffold686 WUBlastX DNA_PiggyBac 31889 32035 32 + . . scaffold686 GLEAN mRNA 32662 32751 0.50665 - . ID=CGI_10004462; scaffold686 WUBlastX DNA_PiggyBac 32662 32751 52 + . . scaffold686 GLEAN mRNA 32641 32751 0.50665 - . ID=CGI_10004462; scaffold686 WUBlastX DNA_PiggyBac 32641 32751 38 + . . scaffold686 GLEAN mRNA 32956 33309 0.50665 - . ID=CGI_10004462; scaffold686 WUBlastX DNA_PiggyBac 32956 33309 54 + . . scaffold686 GLEAN mRNA 82610 82662 0.927367 - . ID=CGI_10004466; scaffold686 TRF Tandem_Repeat 82610 82662 97 + . . scaffold1576 GLEAN mRNA 85718 85775 0.644256 - . ID=CGI_10004469; scaffold1576 TRF Tandem_Repeat 85718 85775 73 + . . scaffold1576 GLEAN mRNA 85718 85769 0.644256 - . ID=CGI_10004469; scaffold1576 TRF Tandem_Repeat 85718 85769 86 + . . scaffold40820 GLEAN mRNA 25903 26072 0.993433 + . ID=CGI_10004473; scaffold40820 TRF Tandem_Repeat 25903 26072 119 + . . scaffold40820 GLEAN mRNA 26072 26247 0.993433 + . ID=CGI_10004473; scaffold40820 TRF Tandem_Repeat 26072 26247 208 + . . scaffold40820 GLEAN mRNA 26088 26249 0.993433 + . ID=CGI_10004473; scaffold40820 TRF Tandem_Repeat 26088 26249 144 + . . scaffold40820 GLEAN mRNA 26555 26599 0.993433 + . ID=CGI_10004473; scaffold40820 TRF Tandem_Repeat 26555 26599 90 + . . scaffold40820 GLEAN mRNA 29966 30708 0.993433 + . ID=CGI_10004473; scaffold40820 TRF Tandem_Repeat 29966 30708 981 + . . scaffold40820 GLEAN mRNA 45089 45213 0.999676 - . ID=CGI_10004475; scaffold40820 TRF Tandem_Repeat 45089 45213 92 + . . scaffold40820 GLEAN mRNA 61783 62038 1 + . ID=CGI_10004477; scaffold40820 TRF Tandem_Repeat 61783 62038 240 + . . scaffold40820 GLEAN mRNA 61839 62080 1 + . ID=CGI_10004477; scaffold40820 TRF Tandem_Repeat 61839 62080 139 + . . scaffold40820 GLEAN mRNA 83592 83636 0.749468 + . ID=CGI_10004478; scaffold40820 TRF Tandem_Repeat 83592 83636 90 + . . scaffold40820 GLEAN mRNA 96536 96816 0.677543 + . ID=CGI_10004479; scaffold40820 TRF Tandem_Repeat 96536 96816 273 + . . scaffold40836 GLEAN mRNA 22400 22448 0.84237 - . ID=CGI_10004482; scaffold40836 TRF Tandem_Repeat 22400 22448 98 + . . scaffold40836 GLEAN mRNA 29992 31240 0.84237 - . ID=CGI_10004482; scaffold40836 TRF Tandem_Repeat 29992 31240 1790 + . . scaffold40836 GLEAN mRNA 32664 32709 0.84237 - . ID=CGI_10004482; scaffold40836 TRF Tandem_Repeat 32664 32709 67 + . . scaffold40836 GLEAN mRNA 63304 63779 0.863777 + . ID=CGI_10004485; scaffold40836 TRF Tandem_Repeat 63304 63779 283 + . . scaffold40836 GLEAN mRNA 81304 81825 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_L2 81304 81825 100 - . . scaffold40836 GLEAN mRNA 88283 88333 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_L1 88283 88333 30 - . . scaffold40836 GLEAN mRNA 82549 82692 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_CR1-L2 82549 82692 87 - . . scaffold40836 GLEAN mRNA 87513 87587 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 87513 87587 27 - . . scaffold40836 GLEAN mRNA 87328 87537 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_L2 87328 87537 33 - . . scaffold40836 GLEAN mRNA 87214 87477 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_CR1 87214 87477 45 - . . scaffold40836 GLEAN mRNA 86315 86563 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 86315 86563 83 - . . scaffold40836 GLEAN mRNA 83613 83753 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 83613 83753 26 - . . scaffold40836 GLEAN mRNA 86315 86479 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 86315 86479 96 - . . scaffold40836 GLEAN mRNA 86542 87051 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_L2 86542 87051 43 - . . scaffold40836 GLEAN mRNA 86282 86470 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_Dong-R4 86282 86470 53 - . . scaffold40836 GLEAN mRNA 84636 85307 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 84636 85307 389 - . . scaffold40836 GLEAN mRNA 84332 84646 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 84332 84646 41 - . . scaffold40836 GLEAN mRNA 82564 82719 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_CR1-L2 82564 82719 68 - . . scaffold40836 GLEAN mRNA 87916 88005 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_I 87916 88005 32 - . . scaffold40836 GLEAN mRNA 86542 86949 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 86542 86949 205 - . . scaffold40836 GLEAN mRNA 87760 87981 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 87760 87981 20 - . . scaffold40836 GLEAN mRNA 84079 84525 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 84079 84525 77 - . . scaffold40836 GLEAN mRNA 83992 84363 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 83992 84363 115 - . . scaffold40836 GLEAN mRNA 85309 86283 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 85309 86283 418 - . . scaffold40836 GLEAN mRNA 87304 87486 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_RTE-X 87304 87486 135 - . . scaffold40836 GLEAN mRNA 87262 87483 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_L2 87262 87483 59 - . . scaffold40836 GLEAN mRNA 81789 81959 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_CR1-L2 81789 81959 29 - . . scaffold40836 GLEAN mRNA 81905 82570 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_L2 81905 82570 154 - . . scaffold685 GLEAN mRNA 6081 6135 0.778478 + . ID=CGI_10004488; scaffold685 TRF Tandem_Repeat 6081 6135 103 + . . scaffold685 GLEAN mRNA 53096 53186 1 + . ID=CGI_10004491; scaffold685 WUBlastX LINE_RTE-X 52995 53186 37 - . . scaffold685 GLEAN mRNA 84306 84449 1 + . ID=CGI_10004493; scaffold685 WUBlastX DNA_Kolobok 84306 84449 73 + . . scaffold685 GLEAN mRNA 84267 84458 1 + . ID=CGI_10004493; scaffold685 WUBlastX DNA_Kolobok 84267 84458 69 + . . scaffold40794 GLEAN mRNA 24806 25345 0.999201 - . ID=CGI_10004495; scaffold40794 WUBlastX DNA_IS4EU 24806 25345 242 + . . scaffold40794 GLEAN mRNA 24785 25438 0.999201 - . ID=CGI_10004495; scaffold40794 WUBlastX DNA_Kolobok-IS4 24785 25438 212 + . . scaffold40794 GLEAN mRNA 24031 24411 0.999201 - . ID=CGI_10004495; scaffold40794 WUBlastX DNA_Kolobok-IS4 24031 24411 109 - . . scaffold40794 GLEAN mRNA 23579 24037 0.999201 - . ID=CGI_10004495; scaffold40794 WUBlastX DNA_IS4EU 23579 24037 212 - . . scaffold40794 GLEAN mRNA 24031 24507 0.999201 - . ID=CGI_10004495; scaffold40794 WUBlastX DNA_IS4EU 24031 24507 85 - . . scaffold40794 GLEAN mRNA 21488 21754 0.999201 - . ID=CGI_10004495; scaffold40794 WUBlastX DNA_IS4EU 21488 21754 53 + . . scaffold40794 GLEAN mRNA 22122 22322 0.999201 - . ID=CGI_10004495; scaffold40794 WUBlastX DNA_IS4EU 22122 22322 40 + . . scaffold387 GLEAN mRNA 29058 29156 0.998991 + . ID=CGI_10004497; scaffold387 WUBlastX LTR_Gypsy 29058 29156 27 - . . scaffold387 GLEAN mRNA 28933 29073 0.998991 + . ID=CGI_10004497; scaffold387 WUBlastX LTR_Gypsy 28933 29073 106 - . . scaffold387 GLEAN mRNA 35475 35501 0.998991 + . ID=CGI_10004497; scaffold387 TRF Tandem_Repeat 35475 35501 54 + . . scaffold387 GLEAN mRNA 37080 37107 0.998991 + . ID=CGI_10004497; scaffold387 TRF Tandem_Repeat 37080 37107 56 + . . scaffold387 GLEAN mRNA 37799 37828 0.998991 + . ID=CGI_10004497; scaffold387 TRF Tandem_Repeat 37799 37828 60 + . . scaffold387 GLEAN mRNA 39266 39319 0.998991 + . ID=CGI_10004497; scaffold387 TRF Tandem_Repeat 39266 39319 72 + . . scaffold387 GLEAN mRNA 35180 35461 0.998991 + . ID=CGI_10004497; scaffold387 WUBlastX LTR_Gypsy 35180 35461 50 - . . scaffold387 GLEAN mRNA 33688 34419 0.998991 + . ID=CGI_10004497; scaffold387 WUBlastX LTR_Gypsy 33688 34419 295 - . . scaffold387 GLEAN mRNA 33508 34287 0.998991 + . ID=CGI_10004497; scaffold387 WUBlastX LTR_Gypsy 33508 34287 477 - . . scaffold387 GLEAN mRNA 35171 35359 0.998991 + . ID=CGI_10004497; scaffold387 WUBlastX LTR_Gypsy 35171 35359 156 - . . scaffold387 GLEAN mRNA 35135 35368 0.998991 + . ID=CGI_10004497; scaffold387 WUBlastX LTR_Gypsy 35135 35368 55 - . . scaffold387 GLEAN mRNA 67668 68344 0.758622 - . ID=CGI_10004500; scaffold387 TRF Tandem_Repeat 67668 68344 789 + . . scaffold40828 GLEAN mRNA 42545 42575 0.605765 + . ID=CGI_10004502; scaffold40828 TRF Tandem_Repeat 42545 42575 53 + . . scaffold40828 GLEAN mRNA 43118 43166 0.605765 + . ID=CGI_10004502; scaffold40828 TRF Tandem_Repeat 43118 43166 98 + . . scaffold40828 GLEAN mRNA 43197 43235 0.605765 + . ID=CGI_10004502; scaffold40828 TRF Tandem_Repeat 43197 43235 55 + . . scaffold40828 GLEAN mRNA 57388 57657 0.605765 + . ID=CGI_10004502; scaffold40828 WUBlastX LTR_Gypsy 57388 57657 39 - . . scaffold40828 GLEAN mRNA 56938 57057 0.605765 + . ID=CGI_10004502; scaffold40828 WUBlastX LTR_Gypsy 56938 57057 66 - . . scaffold40828 GLEAN mRNA 57493 57660 0.605765 + . ID=CGI_10004502; scaffold40828 WUBlastX LTR_Gypsy 57493 57660 91 - . . scaffold40828 GLEAN mRNA 56881 57060 0.605765 + . ID=CGI_10004502; scaffold40828 WUBlastX LTR_Gypsy 56881 57060 55 - . . scaffold40828 GLEAN mRNA 56836 57096 0.605765 + . ID=CGI_10004502; scaffold40828 WUBlastX LTR_Gypsy 56836 57096 48 - . . scaffold40828 GLEAN mRNA 56941 57114 0.605765 + . ID=CGI_10004502; scaffold40828 WUBlastX LTR_Gypsy 56941 57114 61 - . . scaffold40828 GLEAN mRNA 57153 57287 0.605765 + . ID=CGI_10004502; scaffold40828 WUBlastX LTR_Gypsy 57153 57287 23 - . . scaffold40828 GLEAN mRNA 57457 57801 0.605765 + . ID=CGI_10004502; scaffold40828 WUBlastX LTR_Gypsy 57457 57801 53 - . . scaffold40828 GLEAN mRNA 57493 57741 0.605765 + . ID=CGI_10004502; scaffold40828 WUBlastX LTR_Gypsy 57493 57741 87 - . . scaffold40828 GLEAN mRNA 57920 58102 0.605765 + . ID=CGI_10004502; scaffold40828 WUBlastX LTR_Gypsy 57920 58102 25 - . . scaffold40828 GLEAN mRNA 57463 57657 0.605765 + . ID=CGI_10004502; scaffold40828 WUBlastX LTR_Gypsy 57463 57657 64 - . . scaffold40828 GLEAN mRNA 57788 57934 0.605765 + . ID=CGI_10004502; scaffold40828 WUBlastX LTR_Gypsy 57788 57934 20 - . . scaffold382 GLEAN mRNA 48171 48254 0.0752347 + . ID=CGI_10004503; scaffold382 WUBlastX RC_Helitron 48171 48254 25 - . . scaffold382 GLEAN mRNA 48304 48549 0.0752347 + . ID=CGI_10004503; scaffold382 WUBlastX RC_Helitron 48304 48549 27 - . . scaffold382 GLEAN mRNA 41809 42723 0.0752347 + . ID=CGI_10004503; scaffold382 WUBlastX DNA_IS4EU 41809 42723 440 + . . scaffold382 GLEAN mRNA 42766 43545 0.0752347 + . ID=CGI_10004503; scaffold382 WUBlastX DNA_Kolobok-IS4 42766 43545 104 - . . scaffold382 GLEAN mRNA 42817 43407 0.0752347 + . ID=CGI_10004503; scaffold382 WUBlastX DNA_Kolobok-IS4 42817 43407 154 - . . scaffold382 GLEAN mRNA 56385 56442 0.0752347 + . ID=CGI_10004503; scaffold382 TRF Tandem_Repeat 56385 56442 116 + . . scaffold382 GLEAN mRNA 57576 57750 0.0752347 + . ID=CGI_10004503; scaffold382 TRF Tandem_Repeat 57576 57750 122 + . . scaffold382 GLEAN mRNA 93263 93313 0.725518 - . ID=CGI_10004504; scaffold382 TRF Tandem_Repeat 93263 93313 102 + . . scaffold382 GLEAN mRNA 94942 94988 0.725518 - . ID=CGI_10004504; scaffold382 TRF Tandem_Repeat 94942 94988 76 + . . scaffold382 GLEAN mRNA 94941 94997 0.725518 - . ID=CGI_10004504; scaffold382 TRF Tandem_Repeat 94941 94997 78 + . . scaffold382 GLEAN mRNA 99393 99449 0.725518 - . ID=CGI_10004504; scaffold382 TRF Tandem_Repeat 99393 99449 73 + . . scaffold1134 GLEAN mRNA 40054 41185 0.55461 - . ID=CGI_10004505; scaffold1134 TRF Tandem_Repeat 40054 41185 1196 + . . scaffold1134 GLEAN mRNA 32554 33344 0.55461 - . ID=CGI_10004505; scaffold1134 TRF Tandem_Repeat 32554 33344 1173 + . . scaffold1134 GLEAN mRNA 53433 53499 0.999997 - . ID=CGI_10004506; scaffold1134 TRF Tandem_Repeat 53433 53499 80 + . . scaffold1134 GLEAN mRNA 53996 54027 0.999997 - . ID=CGI_10004506; scaffold1134 TRF Tandem_Repeat 53996 54027 50 + . . scaffold1134 GLEAN mRNA 54233 54280 0.999997 - . ID=CGI_10004506; scaffold1134 TRF Tandem_Repeat 54233 54280 96 + . . scaffold1134 GLEAN mRNA 53433 53499 0.922734 + . ID=CGI_10004507; scaffold1134 TRF Tandem_Repeat 53433 53499 80 + . . scaffold1134 GLEAN mRNA 53996 54027 0.922734 + . ID=CGI_10004507; scaffold1134 TRF Tandem_Repeat 53996 54027 50 + . . scaffold1134 GLEAN mRNA 54233 54280 0.922734 + . ID=CGI_10004507; scaffold1134 TRF Tandem_Repeat 54233 54280 96 + . . scaffold1134 GLEAN mRNA 56688 56754 0.922734 + . ID=CGI_10004507; scaffold1134 TRF Tandem_Repeat 56688 56754 89 + . . scaffold1134 GLEAN mRNA 62648 62754 0.922734 + . ID=CGI_10004507; scaffold1134 TRF Tandem_Repeat 62648 62754 196 + . . scaffold1134 GLEAN mRNA 71913 71945 0.922734 + . ID=CGI_10004507; scaffold1134 TRF Tandem_Repeat 71913 71945 57 + . . scaffold1134 GLEAN mRNA 73991 74129 0.922734 + . ID=CGI_10004507; scaffold1134 TRF Tandem_Repeat 73991 74129 118 + . . scaffold1134 GLEAN mRNA 75491 75637 0.922734 + . ID=CGI_10004507; scaffold1134 WUBlastX LINE_RTE-BovB 75491 75637 55 - . . scaffold1070 GLEAN mRNA 11779 11842 0.975951 - . ID=CGI_10004514; scaffold1070 TRF Tandem_Repeat 11779 11842 128 + . . scaffold1070 GLEAN mRNA 28239 28415 0.352689 + . ID=CGI_10004515; scaffold1070 TRF Tandem_Repeat 28239 28415 293 + . . scaffold1070 GLEAN mRNA 29649 29674 0.352689 + . ID=CGI_10004515; scaffold1070 TRF Tandem_Repeat 29649 29674 52 + . . scaffold1070 GLEAN mRNA 29791 30533 0.352689 + . ID=CGI_10004515; scaffold1070 TRF Tandem_Repeat 29791 30533 1000 + . . scaffold1070 GLEAN mRNA 31419 31550 0.352689 + . ID=CGI_10004515; scaffold1070 TRF Tandem_Repeat 31419 31550 52 + . . scaffold1070 GLEAN mRNA 35298 35430 0.352689 + . ID=CGI_10004515; scaffold1070 TRF Tandem_Repeat 35298 35430 92 + . . scaffold1070 GLEAN mRNA 39017 39305 0.352689 + . ID=CGI_10004515; scaffold1070 TRF Tandem_Repeat 39017 39305 506 + . . scaffold1070 GLEAN mRNA 57572 57611 1 - . ID=CGI_10004518; scaffold1070 TRF Tandem_Repeat 57572 57611 57 + . . scaffold1070 GLEAN mRNA 57574 57608 1 - . ID=CGI_10004518; scaffold1070 TRF Tandem_Repeat 57574 57608 61 + . . scaffold1070 GLEAN mRNA 70223 70280 0.999999 - . ID=CGI_10004519; scaffold1070 TRF Tandem_Repeat 70223 70280 73 + . . scaffold1070 GLEAN mRNA 70235 70280 0.999999 - . ID=CGI_10004519; scaffold1070 TRF Tandem_Repeat 70235 70280 65 + . . scaffold1070 GLEAN mRNA 70223 70280 0.999999 - . ID=CGI_10004519; scaffold1070 TRF Tandem_Repeat 70223 70280 73 + . . scaffold1070 GLEAN mRNA 90390 90447 0.499838 - . ID=CGI_10004521; scaffold1070 TRF Tandem_Repeat 90390 90447 107 + . . scaffold1070 GLEAN mRNA 95927 96769 0.499838 - . ID=CGI_10004521; scaffold1070 WUBlastX LINE_L2 95927 96769 233 - . . scaffold1070 GLEAN mRNA 95756 96745 0.499838 - . ID=CGI_10004521; scaffold1070 WUBlastX LINE_CR1 95756 96745 141 - . . scaffold1070 GLEAN mRNA 96873 96944 0.499838 - . ID=CGI_10004521; scaffold1070 WUBlastX LINE_L2 96873 96944 23 - . . scaffold40856 GLEAN mRNA 22352 22468 0.999315 + . ID=CGI_10004523; scaffold40856 TRF Tandem_Repeat 22352 22468 144 + . . scaffold40856 GLEAN mRNA 23094 23377 0.999315 + . ID=CGI_10004523; scaffold40856 TRF Tandem_Repeat 23094 23377 235 + . . scaffold40856 GLEAN mRNA 23094 23378 0.999315 + . ID=CGI_10004523; scaffold40856 TRF Tandem_Repeat 23094 23378 304 + . . scaffold40856 GLEAN mRNA 31943 31997 0.999315 + . ID=CGI_10004523; scaffold40856 TRF Tandem_Repeat 31943 31997 65 + . . scaffold40856 GLEAN mRNA 31939 31994 0.999315 + . ID=CGI_10004523; scaffold40856 TRF Tandem_Repeat 31939 31994 71 + . . scaffold40856 GLEAN mRNA 89947 89998 0.999595 - . ID=CGI_10004527; scaffold40856 TRF Tandem_Repeat 89947 89998 104 + . . scaffold40868 GLEAN mRNA 11995 12052 0.258955 + . ID=CGI_10004529; scaffold40868 TRF Tandem_Repeat 11995 12052 116 + . . scaffold40938 GLEAN mRNA 74842 76062 1 - . ID=CGI_10004534; scaffold40938 TRF Tandem_Repeat 74842 76062 823 + . . scaffold40938 GLEAN mRNA 74902 76067 1 - . ID=CGI_10004534; scaffold40938 TRF Tandem_Repeat 74902 76067 957 + . . scaffold40938 GLEAN mRNA 80479 80951 1 - . ID=CGI_10004534; scaffold40938 TRF Tandem_Repeat 80479 80951 739 + . . scaffold40938 GLEAN mRNA 85779 85895 0.984055 + . ID=CGI_10004535; scaffold40938 TRF Tandem_Repeat 85779 85895 234 + . . scaffold40938 GLEAN mRNA 85797 85895 0.984055 + . ID=CGI_10004535; scaffold40938 TRF Tandem_Repeat 85797 85895 63 + . . scaffold40938 GLEAN mRNA 90281 90398 0.984055 + . ID=CGI_10004535; scaffold40938 TRF Tandem_Repeat 90281 90398 78 + . . scaffold40938 GLEAN mRNA 91284 91412 0.984055 + . ID=CGI_10004535; scaffold40938 TRF Tandem_Repeat 91284 91412 117 + . . scaffold40938 GLEAN mRNA 92143 92464 0.984055 + . ID=CGI_10004535; scaffold40938 TRF Tandem_Repeat 92143 92464 276 + . . scaffold40938 GLEAN mRNA 92941 93510 0.984055 + . ID=CGI_10004535; scaffold40938 TRF Tandem_Repeat 92941 93510 971 + . . scaffold40938 GLEAN mRNA 95241 95979 0.984055 + . ID=CGI_10004535; scaffold40938 TRF Tandem_Repeat 95241 95979 1221 + . . scaffold40938 GLEAN mRNA 95283 95391 0.984055 + . ID=CGI_10004535; scaffold40938 TRF Tandem_Repeat 95283 95391 80 + . . scaffold40894 GLEAN mRNA 34366 34718 0.41206 + . ID=CGI_10004536; scaffold40894 TRF Tandem_Repeat 34366 34718 690 + . . scaffold40894 GLEAN mRNA 37065 37106 0.41206 + . ID=CGI_10004536; scaffold40894 TRF Tandem_Repeat 37065 37106 84 + . . scaffold40894 GLEAN mRNA 34846 35241 0.41206 + . ID=CGI_10004536; scaffold40894 WUBlastX DNA_En-Spm 34846 35241 168 - . . scaffold40894 GLEAN mRNA 56741 56804 1 + . ID=CGI_10004538; scaffold40894 TRF Tandem_Repeat 56741 56804 101 + . . scaffold40894 GLEAN mRNA 50173 51843 1 + . ID=CGI_10004538; scaffold40894 WUBlastX DNA_hAT 50173 51843 558 + . . scaffold40894 GLEAN mRNA 56741 56804 0.654496 - . ID=CGI_10004539; scaffold40894 TRF Tandem_Repeat 56741 56804 101 + . . scaffold40894 GLEAN mRNA 68516 69872 0.654496 - . ID=CGI_10004539; scaffold40894 TRF Tandem_Repeat 68516 69872 2023 + . . scaffold40894 GLEAN mRNA 70034 70075 0.654496 - . ID=CGI_10004539; scaffold40894 TRF Tandem_Repeat 70034 70075 50 + . . scaffold40894 GLEAN mRNA 97251 98324 0.998256 - . ID=CGI_10004541; scaffold40894 WUBlastX DNA_Kolobok 97251 98324 102 - . . scaffold40910 GLEAN mRNA 11725 11760 1 - . ID=CGI_10004542; scaffold40910 TRF Tandem_Repeat 11725 11760 72 + . . scaffold40910 GLEAN mRNA 25423 25554 0.999948 + . ID=CGI_10004544; scaffold40910 WUBlastX LINE_I 25423 25554 37 + . . scaffold40910 GLEAN mRNA 25798 25929 0.999948 + . ID=CGI_10004544; scaffold40910 WUBlastX LINE_I 25798 25929 26 + . . scaffold40910 GLEAN mRNA 40979 41009 0.392975 - . ID=CGI_10004546; scaffold40910 TRF Tandem_Repeat 40979 41009 53 + . . scaffold40910 GLEAN mRNA 45053 45152 0.392975 - . ID=CGI_10004546; scaffold40910 TRF Tandem_Repeat 45053 45152 102 + . . scaffold40910 GLEAN mRNA 45056 45152 0.392975 - . ID=CGI_10004546; scaffold40910 TRF Tandem_Repeat 45056 45152 106 + . . scaffold40910 GLEAN mRNA 55257 55619 0.392975 - . ID=CGI_10004546; scaffold40910 TRF Tandem_Repeat 55257 55619 649 + . . scaffold40910 GLEAN mRNA 56252 58213 0.392975 - . ID=CGI_10004546; scaffold40910 TRF Tandem_Repeat 56252 58213 2860 + . . scaffold40910 GLEAN mRNA 56252 58213 0.392975 - . ID=CGI_10004546; scaffold40910 TRF Tandem_Repeat 56252 58213 2908 + . . scaffold40910 GLEAN mRNA 60033 60057 0.392975 - . ID=CGI_10004546; scaffold40910 TRF Tandem_Repeat 60033 60057 50 + . . scaffold40910 GLEAN mRNA 61430 61589 0.392975 - . ID=CGI_10004546; scaffold40910 TRF Tandem_Repeat 61430 61589 108 + . . scaffold40910 GLEAN mRNA 72783 72989 0.392975 - . ID=CGI_10004546; scaffold40910 TRF Tandem_Repeat 72783 72989 414 + . . scaffold40910 GLEAN mRNA 65493 65666 0.392975 - . ID=CGI_10004546; scaffold40910 TRF Tandem_Repeat 65493 65666 330 + . . scaffold40910 GLEAN mRNA 72783 72989 1 + . ID=CGI_10004547; scaffold40910 TRF Tandem_Repeat 72783 72989 414 + . . scaffold40910 GLEAN mRNA 73859 74506 1 + . ID=CGI_10004547; scaffold40910 TRF Tandem_Repeat 73859 74506 1107 + . . scaffold40910 GLEAN mRNA 80037 80654 1 + . ID=CGI_10004547; scaffold40910 TRF Tandem_Repeat 80037 80654 970 + . . scaffold40910 GLEAN mRNA 80037 80654 1 + . ID=CGI_10004547; scaffold40910 TRF Tandem_Repeat 80037 80654 988 + . . scaffold40910 GLEAN mRNA 82084 82459 1 + . ID=CGI_10004547; scaffold40910 TRF Tandem_Repeat 82084 82459 581 + . . scaffold40910 GLEAN mRNA 82084 82459 0.499789 - . ID=CGI_10004548; scaffold40910 TRF Tandem_Repeat 82084 82459 581 + . . scaffold40910 GLEAN mRNA 88871 88909 0.999673 + . ID=CGI_10004549; scaffold40910 TRF Tandem_Repeat 88871 88909 78 + . . scaffold40910 GLEAN mRNA 91894 92027 0.999673 + . ID=CGI_10004549; scaffold40910 TRF Tandem_Repeat 91894 92027 85 + . . scaffold40910 GLEAN mRNA 91871 92044 0.999673 + . ID=CGI_10004549; scaffold40910 TRF Tandem_Repeat 91871 92044 279 + . . scaffold40910 GLEAN mRNA 92891 92935 0.999673 + . ID=CGI_10004549; scaffold40910 TRF Tandem_Repeat 92891 92935 90 + . . scaffold1846 GLEAN mRNA 82935 83277 0.714897 - . ID=CGI_10004556; scaffold1846 TRF Tandem_Repeat 82935 83277 195 + . . scaffold1846 GLEAN mRNA 82974 83314 0.714897 - . ID=CGI_10004556; scaffold1846 TRF Tandem_Repeat 82974 83314 219 + . . scaffold1846 GLEAN mRNA 89854 89895 0.714897 - . ID=CGI_10004556; scaffold1846 TRF Tandem_Repeat 89854 89895 84 + . . scaffold40928 GLEAN mRNA 43171 43223 0.78306 - . ID=CGI_10004558; scaffold40928 TRF Tandem_Repeat 43171 43223 60 + . . scaffold40928 GLEAN mRNA 39700 39825 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_LOA 39700 39825 25 + . . scaffold40928 GLEAN mRNA 40258 40599 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_CR1 40258 40599 256 + . . scaffold40928 GLEAN mRNA 40616 40807 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_CR1 40616 40807 77 + . . scaffold40928 GLEAN mRNA 40189 40599 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_CR1 40189 40599 230 + . . scaffold40928 GLEAN mRNA 40924 41166 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_CR1 40924 41166 71 + . . scaffold40928 GLEAN mRNA 40616 40774 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_CR1 40616 40774 101 + . . scaffold40928 GLEAN mRNA 40261 40704 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_CR1 40261 40704 152 + . . scaffold40928 GLEAN mRNA 40607 40849 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_CR1 40607 40849 65 + . . scaffold40928 GLEAN mRNA 40963 41166 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_CR1 40963 41166 124 + . . scaffold40928 GLEAN mRNA 39760 39825 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_CR1 39760 39825 40 + . . scaffold40928 GLEAN mRNA 40031 40243 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_CR1 40031 40243 119 + . . scaffold40928 GLEAN mRNA 41005 41241 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_CR1 41005 41241 76 + . . scaffold40928 GLEAN mRNA 39772 40593 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_CR1 39772 40593 90 + . . scaffold40928 GLEAN mRNA 52707 52733 0.78306 - . ID=CGI_10004558; scaffold40928 TRF Tandem_Repeat 52707 52733 54 + . . scaffold40928 GLEAN mRNA 64910 65299 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX DNA_Kolobok 64910 65299 49 + . . scaffold40928 GLEAN mRNA 64952 65281 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX DNA_Kolobok 64952 65281 100 + . . scaffold40928 GLEAN mRNA 65942 66136 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX DNA_Kolobok 65942 66136 76 - . . scaffold40928 GLEAN mRNA 67073 67312 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX DNA_Kolobok 67073 67312 133 - . . scaffold40928 GLEAN mRNA 67787 68047 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX DNA_Kolobok 67787 68047 25 - . . scaffold40928 GLEAN mRNA 68906 69223 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_RTE-X 68906 69223 55 + . . scaffold40960 GLEAN mRNA 5569 6026 0.995292 - . ID=CGI_10004560; scaffold40960 TRF Tandem_Repeat 5569 6026 790 + . . scaffold40960 GLEAN mRNA 13969 14363 0.995292 - . ID=CGI_10004560; scaffold40960 TRF Tandem_Repeat 13969 14363 677 + . . scaffold40960 GLEAN mRNA 6950 7279 0.995292 - . ID=CGI_10004560; scaffold40960 WUBlastX LINE_RTE-X 6950 7279 162 - . . scaffold40960 GLEAN mRNA 6950 7408 0.995292 - . ID=CGI_10004560; scaffold40960 WUBlastX LINE_RTE-X 6950 7408 120 - . . scaffold40960 GLEAN mRNA 57432 58395 0.999999 + . ID=CGI_10004565; scaffold40960 TRF Tandem_Repeat 57432 58395 1289 + . . scaffold40960 GLEAN mRNA 57432 57720 0.999999 + . ID=CGI_10004565; scaffold40960 TRF Tandem_Repeat 57432 57720 506 + . . scaffold40960 GLEAN mRNA 57749 58395 0.999999 + . ID=CGI_10004565; scaffold40960 TRF Tandem_Repeat 57749 58395 950 + . . scaffold40960 GLEAN mRNA 63117 63260 0.999999 + . ID=CGI_10004565; scaffold40960 TRF Tandem_Repeat 63117 63260 184 + . . scaffold40960 GLEAN mRNA 85430 87712 0.780129 + . ID=CGI_10004567; scaffold40960 TRF Tandem_Repeat 85430 87712 3542 + . . scaffold40960 GLEAN mRNA 91115 91280 0.780129 + . ID=CGI_10004567; scaffold40960 TRF Tandem_Repeat 91115 91280 251 + . . scaffold40916 GLEAN mRNA 25027 25060 0.246631 + . ID=CGI_10004570; scaffold40916 TRF Tandem_Repeat 25027 25060 50 + . . scaffold40916 GLEAN mRNA 38278 38330 0.246631 + . ID=CGI_10004570; scaffold40916 TRF Tandem_Repeat 38278 38330 70 + . . scaffold40916 GLEAN mRNA 39879 39992 0.246631 + . ID=CGI_10004570; scaffold40916 WUBlastX LINE_L1 39879 39992 27 + . . scaffold40916 GLEAN mRNA 39214 39924 0.246631 + . ID=CGI_10004570; scaffold40916 WUBlastX LINE_L1-Tx1 39214 39924 493 + . . scaffold40916 GLEAN mRNA 39960 42962 0.246631 + . ID=CGI_10004570; scaffold40916 WUBlastX LINE_L1-Tx1 39960 42962 1372 + . . scaffold40916 GLEAN mRNA 38428 38901 0.246631 + . ID=CGI_10004570; scaffold40916 WUBlastX LINE_L2 38428 38901 95 + . . scaffold40916 GLEAN mRNA 38182 38928 0.246631 + . ID=CGI_10004570; scaffold40916 WUBlastX LINE_L2 38182 38928 80 + . . scaffold40916 GLEAN mRNA 51898 51928 0.246631 + . ID=CGI_10004570; scaffold40916 TRF Tandem_Repeat 51898 51928 62 + . . scaffold40916 GLEAN mRNA 25027 25060 0.499838 - . ID=CGI_10004571; scaffold40916 TRF Tandem_Repeat 25027 25060 50 + . . scaffold40916 GLEAN mRNA 68217 68879 0.996236 - . ID=CGI_10004574; scaffold40916 WUBlastX LINE_RTE-X 68217 68879 173 - . . scaffold40916 GLEAN mRNA 77265 77389 0.811443 + . ID=CGI_10004575; scaffold40916 TRF Tandem_Repeat 77265 77389 214 + . . scaffold40916 GLEAN mRNA 86871 86900 0.933837 - . ID=CGI_10004577; scaffold40916 TRF Tandem_Repeat 86871 86900 60 + . . scaffold40916 GLEAN mRNA 88930 88979 0.933837 - . ID=CGI_10004577; scaffold40916 TRF Tandem_Repeat 88930 88979 82 + . . scaffold40916 GLEAN mRNA 89045 89077 0.933837 - . ID=CGI_10004577; scaffold40916 TRF Tandem_Repeat 89045 89077 66 + . . scaffold40916 GLEAN mRNA 92859 93865 0.933837 - . ID=CGI_10004577; scaffold40916 TRF Tandem_Repeat 92859 93865 1216 + . . scaffold40916 GLEAN mRNA 92859 93851 0.933837 - . ID=CGI_10004577; scaffold40916 TRF Tandem_Repeat 92859 93851 1245 + . . scaffold118 GLEAN mRNA 2292 2369 0.499311 - . ID=CGI_10004578; scaffold118 TRF Tandem_Repeat 2292 2369 156 + . . scaffold118 GLEAN mRNA 8105 8583 0.499311 - . ID=CGI_10004578; scaffold118 TRF Tandem_Repeat 8105 8583 586 + . . scaffold118 GLEAN mRNA 63591 63633 0.49839 - . ID=CGI_10004582; scaffold118 TRF Tandem_Repeat 63591 63633 86 + . . scaffold118 GLEAN mRNA 72790 73296 0.835706 + . ID=CGI_10004583; scaffold118 WUBlastX LINE_CR1-L2 72790 73296 225 + . . scaffold118 GLEAN mRNA 72595 73329 0.835706 + . ID=CGI_10004583; scaffold118 WUBlastX LINE_L2 72595 73329 148 + . . scaffold118 GLEAN mRNA 74209 77424 0.835706 + . ID=CGI_10004583; scaffold118 WUBlastX LINE_L2 74209 77424 1801 + . . scaffold40950 GLEAN mRNA 63362 63411 1 - . ID=CGI_10004590; scaffold40950 TRF Tandem_Repeat 63362 63411 55 + . . scaffold40950 GLEAN mRNA 63811 63861 1 - . ID=CGI_10004590; scaffold40950 TRF Tandem_Repeat 63811 63861 102 + . . scaffold40950 GLEAN mRNA 64204 64323 1 - . ID=CGI_10004590; scaffold40950 WUBlastX LINE_RTE-X 64204 64323 80 + . . scaffold40950 GLEAN mRNA 64186 64377 1 - . ID=CGI_10004590; scaffold40950 WUBlastX LINE_RTE-X 64186 64377 78 + . . scaffold40950 GLEAN mRNA 65876 65929 1 - . ID=CGI_10004590; scaffold40950 TRF Tandem_Repeat 65876 65929 65 + . . scaffold40952 GLEAN mRNA 43862 43905 0.998912 - . ID=CGI_10004593; scaffold40952 TRF Tandem_Repeat 43862 43905 63 + . . scaffold40952 GLEAN mRNA 44307 44337 0.998912 - . ID=CGI_10004593; scaffold40952 TRF Tandem_Repeat 44307 44337 62 + . . scaffold40952 GLEAN mRNA 56413 56466 0.797605 + . ID=CGI_10004594; scaffold40952 WUBlastX DNA_Kolobok-Hyd 56413 56466 25 + . . scaffold40952 GLEAN mRNA 56541 56747 0.797605 + . ID=CGI_10004594; scaffold40952 WUBlastX DNA_Kolobok-Hyd 56541 56747 26 + . . scaffold40952 GLEAN mRNA 85159 86036 0.641337 - . ID=CGI_10004595; scaffold40952 TRF Tandem_Repeat 85159 86036 1339 + . . scaffold736 GLEAN mRNA 68510 68550 0.980917 + . ID=CGI_10004598; scaffold736 TRF Tandem_Repeat 68510 68550 82 + . . scaffold736 GLEAN mRNA 83406 83561 0.99909 - . ID=CGI_10004599; scaffold736 WUBlastX LTR_Gypsy 83406 83561 64 - . . scaffold736 GLEAN mRNA 87481 87530 0.935879 + . ID=CGI_10004600; scaffold736 TRF Tandem_Repeat 87481 87530 66 + . . scaffold736 GLEAN mRNA 87481 87530 0.935879 + . ID=CGI_10004600; scaffold736 TRF Tandem_Repeat 87481 87530 75 + . . scaffold40980 GLEAN mRNA 390 422 0.99481 + . ID=CGI_10004601; scaffold40980 TRF Tandem_Repeat 390 422 66 + . . scaffold40980 GLEAN mRNA 3501 3533 0.99481 + . ID=CGI_10004601; scaffold40980 TRF Tandem_Repeat 3501 3533 57 + . . scaffold40980 GLEAN mRNA 7340 7374 0.99481 + . ID=CGI_10004601; scaffold40980 TRF Tandem_Repeat 7340 7374 70 + . . scaffold40980 GLEAN mRNA 31715 31759 1 - . ID=CGI_10004604; scaffold40980 TRF Tandem_Repeat 31715 31759 90 + . . scaffold40980 GLEAN mRNA 89522 89803 0.999635 - . ID=CGI_10004606; scaffold40980 WUBlastX LINE_L2 89522 89803 95 - . . scaffold40948 GLEAN mRNA 27686 27766 0.999675 - . ID=CGI_10004610; scaffold40948 WUBlastX LINE_L1 27686 27766 25 - . . scaffold40948 GLEAN mRNA 44713 44908 0.999075 + . ID=CGI_10004611; scaffold40948 TRF Tandem_Repeat 44713 44908 144 + . . scaffold40948 GLEAN mRNA 44681 44914 0.999075 + . ID=CGI_10004611; scaffold40948 TRF Tandem_Repeat 44681 44914 181 + . . scaffold40948 GLEAN mRNA 44752 44914 0.999075 + . ID=CGI_10004611; scaffold40948 TRF Tandem_Repeat 44752 44914 177 + . . scaffold40948 GLEAN mRNA 98630 99130 0.536967 + . ID=CGI_10004613; scaffold40948 WUBlastX LINE_L2 98630 99130 81 + . . scaffold40948 GLEAN mRNA 98627 99028 0.536967 + . ID=CGI_10004613; scaffold40948 WUBlastX LINE_CR1-L2 98627 99028 110 + . . scaffold40982 GLEAN mRNA 28634 28744 0.999855 + . ID=CGI_10004617; scaffold40982 TRF Tandem_Repeat 28634 28744 64 + . . scaffold40982 GLEAN mRNA 28616 28724 0.999855 + . ID=CGI_10004617; scaffold40982 TRF Tandem_Repeat 28616 28724 51 + . . scaffold311 GLEAN mRNA 14830 14866 0.999997 + . ID=CGI_10004623; scaffold311 TRF Tandem_Repeat 14830 14866 74 + . . scaffold311 GLEAN mRNA 14903 14942 0.999997 + . ID=CGI_10004623; scaffold311 TRF Tandem_Repeat 14903 14942 62 + . . scaffold311 GLEAN mRNA 15287 15341 0.999997 + . ID=CGI_10004623; scaffold311 TRF Tandem_Repeat 15287 15341 65 + . . scaffold311 GLEAN mRNA 15396 15467 0.999997 + . ID=CGI_10004623; scaffold311 TRF Tandem_Repeat 15396 15467 144 + . . scaffold311 GLEAN mRNA 21331 21452 0.989819 - . ID=CGI_10004624; scaffold311 TRF Tandem_Repeat 21331 21452 167 + . . scaffold311 GLEAN mRNA 36793 36819 0.368198 - . ID=CGI_10004625; scaffold311 TRF Tandem_Repeat 36793 36819 54 + . . scaffold311 GLEAN mRNA 53535 53624 0.389749 + . ID=CGI_10004626; scaffold311 TRF Tandem_Repeat 53535 53624 99 + . . scaffold311 GLEAN mRNA 57168 57269 0.389749 + . ID=CGI_10004626; scaffold311 TRF Tandem_Repeat 57168 57269 132 + . . scaffold311 GLEAN mRNA 58150 58217 0.389749 + . ID=CGI_10004626; scaffold311 TRF Tandem_Repeat 58150 58217 118 + . . scaffold311 GLEAN mRNA 63660 63691 0.389749 + . ID=CGI_10004626; scaffold311 TRF Tandem_Repeat 63660 63691 64 + . . scaffold311 GLEAN mRNA 80950 80999 0.805158 + . ID=CGI_10004628; scaffold311 TRF Tandem_Repeat 80950 80999 64 + . . scaffold311 GLEAN mRNA 91465 91509 1 - . ID=CGI_10004629; scaffold311 TRF Tandem_Repeat 91465 91509 83 + . . scaffold605 GLEAN mRNA 9026 9067 0.648316 + . ID=CGI_10004632; scaffold605 TRF Tandem_Repeat 9026 9067 50 + . . scaffold605 GLEAN mRNA 42729 42977 1 + . ID=CGI_10004633; scaffold605 WUBlastX RC_Helitron 42729 42977 36 + . . scaffold605 GLEAN mRNA 43551 44192 1 + . ID=CGI_10004633; scaffold605 WUBlastX RC_Helitron 43551 44192 27 + . . scaffold605 GLEAN mRNA 72053 73073 0.965284 + . ID=CGI_10004634; scaffold605 TRF Tandem_Repeat 72053 73073 976 + . . scaffold605 GLEAN mRNA 73906 73955 0.965284 + . ID=CGI_10004634; scaffold605 TRF Tandem_Repeat 73906 73955 66 + . . scaffold605 GLEAN mRNA 74121 74942 0.965284 + . ID=CGI_10004634; scaffold605 TRF Tandem_Repeat 74121 74942 1218 + . . scaffold605 GLEAN mRNA 80560 80906 0.965284 + . ID=CGI_10004634; scaffold605 TRF Tandem_Repeat 80560 80906 445 + . . scaffold605 GLEAN mRNA 80560 80906 0.965284 + . ID=CGI_10004634; scaffold605 TRF Tandem_Repeat 80560 80906 427 + . . scaffold41022 GLEAN mRNA 17235 17282 0.678141 - . ID=CGI_10004635; scaffold41022 TRF Tandem_Repeat 17235 17282 55 + . . scaffold41022 GLEAN mRNA 27015 27076 0.678141 - . ID=CGI_10004635; scaffold41022 TRF Tandem_Repeat 27015 27076 124 + . . scaffold41022 GLEAN mRNA 27142 27180 0.678141 - . ID=CGI_10004635; scaffold41022 TRF Tandem_Repeat 27142 27180 53 + . . scaffold41022 GLEAN mRNA 32946 33227 0.678141 - . ID=CGI_10004635; scaffold41022 TRF Tandem_Repeat 32946 33227 546 + . . scaffold41022 GLEAN mRNA 37811 37838 0.678141 - . ID=CGI_10004635; scaffold41022 TRF Tandem_Repeat 37811 37838 56 + . . scaffold41022 GLEAN mRNA 38514 38557 0.678141 - . ID=CGI_10004635; scaffold41022 TRF Tandem_Repeat 38514 38557 88 + . . scaffold41022 GLEAN mRNA 38944 39129 0.678141 - . ID=CGI_10004635; scaffold41022 TRF Tandem_Repeat 38944 39129 322 + . . scaffold41022 GLEAN mRNA 55310 55367 0.993705 + . ID=CGI_10004636; scaffold41022 TRF Tandem_Repeat 55310 55367 98 + . . scaffold41022 GLEAN mRNA 55481 55506 0.993705 + . ID=CGI_10004636; scaffold41022 TRF Tandem_Repeat 55481 55506 52 + . . scaffold41022 GLEAN mRNA 93462 93940 0.650358 + . ID=CGI_10004637; scaffold41022 TRF Tandem_Repeat 93462 93940 411 + . . scaffold41022 GLEAN mRNA 98025 98156 0.650358 + . ID=CGI_10004637; scaffold41022 WUBlastX LINE_RTE-X 98025 98156 46 - . . scaffold41022 GLEAN mRNA 97718 98002 0.650358 + . ID=CGI_10004637; scaffold41022 WUBlastX LINE_RTE-X 97718 98002 35 - . . scaffold41022 GLEAN mRNA 101395 101586 0.650358 + . ID=CGI_10004637; scaffold41022 TRF Tandem_Repeat 101395 101586 215 + . . scaffold41022 GLEAN mRNA 101586 101690 0.650358 + . ID=CGI_10004637; scaffold41022 TRF Tandem_Repeat 101586 101690 104 + . . scaffold41022 GLEAN mRNA 101603 101759 0.650358 + . ID=CGI_10004637; scaffold41022 TRF Tandem_Repeat 101603 101759 161 + . . scaffold41022 GLEAN mRNA 103213 103254 0.650358 + . ID=CGI_10004637; scaffold41022 TRF Tandem_Repeat 103213 103254 77 + . . scaffold41014 GLEAN mRNA 68526 68558 0.861197 - . ID=CGI_10004639; scaffold41014 TRF Tandem_Repeat 68526 68558 66 + . . scaffold41014 GLEAN mRNA 68591 68694 0.861197 - . ID=CGI_10004639; scaffold41014 TRF Tandem_Repeat 68591 68694 88 + . . scaffold41014 GLEAN mRNA 68610 68710 0.861197 - . ID=CGI_10004639; scaffold41014 TRF Tandem_Repeat 68610 68710 130 + . . scaffold41014 GLEAN mRNA 76691 76769 0.861197 - . ID=CGI_10004639; scaffold41014 TRF Tandem_Repeat 76691 76769 79 + . . scaffold41014 GLEAN mRNA 76696 76769 0.861197 - . ID=CGI_10004639; scaffold41014 TRF Tandem_Repeat 76696 76769 68 + . . scaffold41014 GLEAN mRNA 76700 76769 0.861197 - . ID=CGI_10004639; scaffold41014 TRF Tandem_Repeat 76700 76769 72 + . . scaffold41014 GLEAN mRNA 66386 66664 0.861197 - . ID=CGI_10004639; scaffold41014 WUBlastX DNA_Crypton 66386 66664 41 - . . scaffold41014 GLEAN mRNA 66742 66951 0.861197 - . ID=CGI_10004639; scaffold41014 WUBlastX DNA_Crypton 66742 66951 60 - . . scaffold41014 GLEAN mRNA 82120 82226 0.861197 - . ID=CGI_10004639; scaffold41014 TRF Tandem_Repeat 82120 82226 117 + . . scaffold41014 GLEAN mRNA 86876 89585 0.861197 - . ID=CGI_10004639; scaffold41014 TRF Tandem_Repeat 86876 89585 3286 + . . scaffold1807 GLEAN mRNA 15949 15990 0.999992 + . ID=CGI_10004643; scaffold1807 TRF Tandem_Repeat 15949 15990 50 + . . scaffold1807 GLEAN mRNA 43278 43343 0.990974 - . ID=CGI_10004644; scaffold1807 TRF Tandem_Repeat 43278 43343 55 + . . scaffold1807 GLEAN mRNA 46900 47235 0.990974 - . ID=CGI_10004644; scaffold1807 WUBlastX LTR_DIRS 46900 47235 97 + . . scaffold1807 GLEAN mRNA 44531 45811 0.990974 - . ID=CGI_10004644; scaffold1807 WUBlastX LTR_DIRS 44531 45811 106 + . . scaffold1807 GLEAN mRNA 45808 46053 0.990974 - . ID=CGI_10004644; scaffold1807 WUBlastX LTR_DIRS 45808 46053 92 + . . scaffold1807 GLEAN mRNA 46056 46349 0.990974 - . ID=CGI_10004644; scaffold1807 WUBlastX LTR_DIRS 46056 46349 51 + . . scaffold1045 GLEAN mRNA 66413 66470 0.494686 - . ID=CGI_10004646; scaffold1045 TRF Tandem_Repeat 66413 66470 116 + . . scaffold1045 GLEAN mRNA 67083 67137 0.494686 - . ID=CGI_10004646; scaffold1045 TRF Tandem_Repeat 67083 67137 103 + . . scaffold1045 GLEAN mRNA 77862 77932 0.999117 + . ID=CGI_10004647; scaffold1045 TRF Tandem_Repeat 77862 77932 133 + . . scaffold1045 GLEAN mRNA 77862 77928 0.999117 + . ID=CGI_10004647; scaffold1045 TRF Tandem_Repeat 77862 77928 80 + . . scaffold41034 GLEAN mRNA 14010 14102 0.199865 - . ID=CGI_10004649; scaffold41034 TRF Tandem_Repeat 14010 14102 170 + . . scaffold41034 GLEAN mRNA 15956 16230 0.199865 - . ID=CGI_10004649; scaffold41034 TRF Tandem_Repeat 15956 16230 324 + . . scaffold41034 GLEAN mRNA 17298 17524 0.199865 - . ID=CGI_10004649; scaffold41034 TRF Tandem_Repeat 17298 17524 237 + . . scaffold41034 GLEAN mRNA 17298 17524 0.199865 - . ID=CGI_10004649; scaffold41034 TRF Tandem_Repeat 17298 17524 271 + . . scaffold41034 GLEAN mRNA 39916 39973 0.5 - . ID=CGI_10004650; scaffold41034 TRF Tandem_Repeat 39916 39973 107 + . . scaffold41034 GLEAN mRNA 42981 43995 0.5 - . ID=CGI_10004650; scaffold41034 TRF Tandem_Repeat 42981 43995 963 + . . scaffold41034 GLEAN mRNA 42981 43995 0.65884 + . ID=CGI_10004651; scaffold41034 TRF Tandem_Repeat 42981 43995 963 + . . scaffold41034 GLEAN mRNA 57934 58020 0.65884 + . ID=CGI_10004651; scaffold41034 WUBlastX LTR_DIRS 57934 58020 54 + . . scaffold41034 GLEAN mRNA 58020 58382 0.65884 + . ID=CGI_10004651; scaffold41034 WUBlastX LTR_DIRS 58020 58382 187 + . . scaffold41034 GLEAN mRNA 58402 58653 0.65884 + . ID=CGI_10004651; scaffold41034 WUBlastX LTR_DIRS 58402 58653 79 + . . scaffold41034 GLEAN mRNA 58402 58713 0.65884 + . ID=CGI_10004651; scaffold41034 WUBlastX LTR_DIRS 58402 58713 67 + . . scaffold41034 GLEAN mRNA 56996 57256 0.65884 + . ID=CGI_10004651; scaffold41034 WUBlastX DNA_Academ 56996 57256 72 + . . scaffold41034 GLEAN mRNA 58754 58849 0.65884 + . ID=CGI_10004651; scaffold41034 WUBlastX LTR_DIRS 58754 58849 53 + . . scaffold41034 GLEAN mRNA 59281 59448 0.65884 + . ID=CGI_10004651; scaffold41034 WUBlastX LTR_DIRS 59281 59448 100 + . . scaffold41034 GLEAN mRNA 58658 58822 0.65884 + . ID=CGI_10004651; scaffold41034 WUBlastX LTR_DIRS 58658 58822 24 + . . scaffold41064 GLEAN mRNA 7562 8321 1 + . ID=CGI_10004654; scaffold41064 TRF Tandem_Repeat 7562 8321 475 + . . scaffold41064 GLEAN mRNA 8704 8907 1 + . ID=CGI_10004654; scaffold41064 TRF Tandem_Repeat 8704 8907 98 + . . scaffold41064 GLEAN mRNA 8672 9140 1 + . ID=CGI_10004654; scaffold41064 TRF Tandem_Repeat 8672 9140 598 + . . scaffold41064 GLEAN mRNA 8643 9140 1 + . ID=CGI_10004654; scaffold41064 TRF Tandem_Repeat 8643 9140 621 + . . scaffold41064 GLEAN mRNA 19929 20069 1 + . ID=CGI_10004655; scaffold41064 TRF Tandem_Repeat 19929 20069 212 + . . scaffold41064 GLEAN mRNA 28718 28807 0.889072 - . ID=CGI_10004656; scaffold41064 TRF Tandem_Repeat 28718 28807 171 + . . scaffold41064 GLEAN mRNA 30048 30187 0.889072 - . ID=CGI_10004656; scaffold41064 TRF Tandem_Repeat 30048 30187 253 + . . scaffold41064 GLEAN mRNA 30202 30590 0.889072 - . ID=CGI_10004656; scaffold41064 TRF Tandem_Repeat 30202 30590 360 + . . scaffold41064 GLEAN mRNA 32022 32065 0.889072 - . ID=CGI_10004656; scaffold41064 TRF Tandem_Repeat 32022 32065 88 + . . scaffold41064 GLEAN mRNA 50008 50245 0.889923 + . ID=CGI_10004658; scaffold41064 TRF Tandem_Repeat 50008 50245 169 + . . scaffold41064 GLEAN mRNA 50261 51307 0.889923 + . ID=CGI_10004658; scaffold41064 TRF Tandem_Repeat 50261 51307 856 + . . scaffold41064 GLEAN mRNA 55576 55600 0.8895 + . ID=CGI_10004659; scaffold41064 TRF Tandem_Repeat 55576 55600 50 + . . scaffold41064 GLEAN mRNA 58470 58518 0.8895 + . ID=CGI_10004659; scaffold41064 TRF Tandem_Repeat 58470 58518 89 + . . scaffold1341 GLEAN mRNA 7033 7072 0.992186 + . ID=CGI_10004662; scaffold1341 TRF Tandem_Repeat 7033 7072 62 + . . scaffold1341 GLEAN mRNA 7062 7121 0.992186 + . ID=CGI_10004662; scaffold1341 TRF Tandem_Repeat 7062 7121 102 + . . scaffold1341 GLEAN mRNA 12761 12807 0.992186 + . ID=CGI_10004662; scaffold1341 TRF Tandem_Repeat 12761 12807 67 + . . scaffold1341 GLEAN mRNA 14318 14361 0.992186 + . ID=CGI_10004662; scaffold1341 TRF Tandem_Repeat 14318 14361 61 + . . scaffold1341 GLEAN mRNA 5529 5801 0.992186 + . ID=CGI_10004662; scaffold1341 WUBlastX LINE_L1-Tx1 5529 5801 21 - . . scaffold1341 GLEAN mRNA 5598 5750 0.992186 + . ID=CGI_10004662; scaffold1341 WUBlastX LINE_L1 5598 5750 23 - . . scaffold1341 GLEAN mRNA 26895 26944 0.992186 + . ID=CGI_10004662; scaffold1341 TRF Tandem_Repeat 26895 26944 100 + . . scaffold1341 GLEAN mRNA 22343 22594 0.992186 + . ID=CGI_10004662; scaffold1341 WUBlastX LINE_L2 22343 22594 57 - . . scaffold1341 GLEAN mRNA 22346 22552 0.992186 + . ID=CGI_10004662; scaffold1341 WUBlastX LINE_L2 22346 22552 100 - . . scaffold1341 GLEAN mRNA 21653 22537 0.992186 + . ID=CGI_10004662; scaffold1341 WUBlastX LINE_L2 21653 22537 93 - . . scaffold1341 GLEAN mRNA 37139 37532 0.931127 - . ID=CGI_10004664; scaffold1341 TRF Tandem_Repeat 37139 37532 522 + . . scaffold1341 GLEAN mRNA 37555 37723 0.931127 - . ID=CGI_10004664; scaffold1341 TRF Tandem_Repeat 37555 37723 223 + . . scaffold1341 GLEAN mRNA 38216 38425 0.931127 - . ID=CGI_10004664; scaffold1341 TRF Tandem_Repeat 38216 38425 163 + . . scaffold1341 GLEAN mRNA 39684 39851 0.931127 - . ID=CGI_10004664; scaffold1341 TRF Tandem_Repeat 39684 39851 219 + . . scaffold1341 GLEAN mRNA 39846 40842 0.931127 - . ID=CGI_10004664; scaffold1341 TRF Tandem_Repeat 39846 40842 1401 + . . scaffold1341 GLEAN mRNA 47929 48858 0.931127 - . ID=CGI_10004664; scaffold1341 TRF Tandem_Repeat 47929 48858 1446 + . . scaffold1341 GLEAN mRNA 49472 50551 0.931127 - . ID=CGI_10004664; scaffold1341 TRF Tandem_Repeat 49472 50551 1567 + . . scaffold1341 GLEAN mRNA 73014 73121 1 + . ID=CGI_10004665; scaffold1341 TRF Tandem_Repeat 73014 73121 207 + . . scaffold1341 GLEAN mRNA 79499 79711 1 + . ID=CGI_10004665; scaffold1341 TRF Tandem_Repeat 79499 79711 345 + . . scaffold1861 GLEAN mRNA 7971 8019 0.985667 - . ID=CGI_10004667; scaffold1861 TRF Tandem_Repeat 7971 8019 98 + . . scaffold1861 GLEAN mRNA 22826 23020 0.98495 - . ID=CGI_10004668; scaffold1861 WUBlastX DNA_Crypton 22826 23020 62 + . . scaffold1861 GLEAN mRNA 37947 37992 0.661012 + . ID=CGI_10004669; scaffold1861 TRF Tandem_Repeat 37947 37992 56 + . . scaffold1861 GLEAN mRNA 37950 37988 0.661012 + . ID=CGI_10004669; scaffold1861 TRF Tandem_Repeat 37950 37988 60 + . . scaffold1861 GLEAN mRNA 40283 40729 0.661012 + . ID=CGI_10004669; scaffold1861 WUBlastX DNA_Crypton 40283 40729 49 + . . scaffold1861 GLEAN mRNA 56559 56643 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 56559 56643 84 + . . scaffold1861 GLEAN mRNA 57060 57214 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 57060 57214 139 + . . scaffold1861 GLEAN mRNA 57053 57242 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 57053 57242 245 + . . scaffold1861 GLEAN mRNA 57242 57379 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 57242 57379 107 + . . scaffold1861 GLEAN mRNA 57443 57528 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 57443 57528 64 + . . scaffold1861 GLEAN mRNA 61322 61406 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 61322 61406 84 + . . scaffold1861 GLEAN mRNA 61493 61684 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 61493 61684 231 + . . scaffold1861 GLEAN mRNA 61491 61684 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 61491 61684 145 + . . scaffold1861 GLEAN mRNA 61684 61821 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 61684 61821 107 + . . scaffold1861 GLEAN mRNA 72151 72954 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 72151 72954 471 + . . scaffold1861 GLEAN mRNA 72158 72912 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 72158 72912 293 + . . scaffold1861 GLEAN mRNA 72821 72943 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 72821 72943 88 + . . scaffold1861 GLEAN mRNA 72852 72976 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 72852 72976 115 + . . scaffold1861 GLEAN mRNA 65514 65567 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 65514 65567 108 + . . scaffold41054 GLEAN mRNA 16272 16303 0.98779 - . ID=CGI_10004673; scaffold41054 TRF Tandem_Repeat 16272 16303 64 + . . scaffold41054 GLEAN mRNA 23374 23526 0.98779 - . ID=CGI_10004673; scaffold41054 TRF Tandem_Repeat 23374 23526 162 + . . scaffold41054 GLEAN mRNA 29527 29597 0.98779 - . ID=CGI_10004673; scaffold41054 TRF Tandem_Repeat 29527 29597 63 + . . scaffold41054 GLEAN mRNA 20144 20590 0.98779 - . ID=CGI_10004673; scaffold41054 WUBlastX DNA_hAT-Tip100 20144 20590 101 - . . scaffold41054 GLEAN mRNA 37088 37760 0.98779 - . ID=CGI_10004673; scaffold41054 TRF Tandem_Repeat 37088 37760 895 + . . scaffold41054 GLEAN mRNA 35884 36171 0.98779 - . ID=CGI_10004673; scaffold41054 WUBlastX DNA_TcMar-Marin 35884 36171 167 - . . scaffold41054 GLEAN mRNA 35288 35695 0.98779 - . ID=CGI_10004673; scaffold41054 WUBlastX DNA_TcMar-Marin 35288 35695 211 - . . scaffold41054 GLEAN mRNA 36165 36542 0.98779 - . ID=CGI_10004673; scaffold41054 WUBlastX DNA_TcMar-Marin 36165 36542 153 - . . scaffold41082 GLEAN mRNA 102522 102554 1 + . ID=CGI_10004679; scaffold41082 TRF Tandem_Repeat 102522 102554 57 + . . scaffold60 GLEAN mRNA 33298 33355 0.863777 + . ID=CGI_10004681; scaffold60 TRF Tandem_Repeat 33298 33355 116 + . . scaffold60 GLEAN mRNA 33371 33405 0.863777 + . ID=CGI_10004681; scaffold60 TRF Tandem_Repeat 33371 33405 52 + . . scaffold60 GLEAN mRNA 34860 34899 0.863777 + . ID=CGI_10004681; scaffold60 TRF Tandem_Repeat 34860 34899 80 + . . scaffold60 GLEAN mRNA 67136 67190 0.999624 - . ID=CGI_10004684; scaffold60 TRF Tandem_Repeat 67136 67190 96 + . . scaffold60 GLEAN mRNA 96941 97294 0.999661 - . ID=CGI_10004686; scaffold60 WUBlastX DNA_Academ 96941 97294 152 - . . scaffold60 GLEAN mRNA 97010 97333 0.999661 - . ID=CGI_10004686; scaffold60 WUBlastX DNA_Academ 97010 97387 169 - . . scaffold1812 GLEAN mRNA 31454 31563 0.997673 - . ID=CGI_10004688; scaffold1812 TRF Tandem_Repeat 31454 31563 114 + . . scaffold1812 GLEAN mRNA 32068 32415 0.997673 - . ID=CGI_10004688; scaffold1812 WUBlastX LINE_L2 32068 32415 22 + . . scaffold1812 GLEAN mRNA 37326 37481 0.997673 - . ID=CGI_10004688; scaffold1812 WUBlastX LINE_RTE-X 37326 37481 38 - . . scaffold1812 GLEAN mRNA 37488 37598 0.997673 - . ID=CGI_10004688; scaffold1812 WUBlastX LINE_RTE-X 37488 37598 62 - . . scaffold1812 GLEAN mRNA 69509 69542 0.999994 + . ID=CGI_10004690; scaffold1812 TRF Tandem_Repeat 69509 69542 50 + . . scaffold1812 GLEAN mRNA 72377 72446 0.999994 + . ID=CGI_10004690; scaffold1812 TRF Tandem_Repeat 72377 72446 97 + . . scaffold1812 GLEAN mRNA 72376 72446 0.999994 + . ID=CGI_10004690; scaffold1812 TRF Tandem_Repeat 72376 72446 117 + . . scaffold41086 GLEAN mRNA 33763 33830 0.999351 - . ID=CGI_10004692; scaffold41086 TRF Tandem_Repeat 33763 33830 136 + . . scaffold41086 GLEAN mRNA 36842 36978 0.998497 - . ID=CGI_10004693; scaffold41086 TRF Tandem_Repeat 36842 36978 211 + . . scaffold41086 GLEAN mRNA 42210 42246 0.998497 - . ID=CGI_10004693; scaffold41086 TRF Tandem_Repeat 42210 42246 74 + . . scaffold634 GLEAN mRNA 14984 15697 0.999899 + . ID=CGI_10004698; scaffold634 WUBlastX LTR_Gypsy 14984 15697 57 - . . scaffold634 GLEAN mRNA 14207 14629 0.999899 + . ID=CGI_10004698; scaffold634 WUBlastX LTR_Gypsy 14207 14629 95 - . . scaffold634 GLEAN mRNA 15020 15559 0.999899 + . ID=CGI_10004698; scaffold634 WUBlastX LTR_Gypsy-Cigr 15020 15559 175 - . . scaffold634 GLEAN mRNA 14255 14755 0.999899 + . ID=CGI_10004698; scaffold634 WUBlastX LTR_Gypsy 14255 14755 66 - . . scaffold634 GLEAN mRNA 14117 14698 0.999899 + . ID=CGI_10004698; scaffold634 WUBlastX LTR_Gypsy 14117 14698 54 - . . scaffold634 GLEAN mRNA 14792 15538 0.999899 + . ID=CGI_10004698; scaffold634 WUBlastX LTR_Gypsy 14792 15538 131 - . . scaffold634 GLEAN mRNA 16755 16779 0.999899 + . ID=CGI_10004698; scaffold634 TRF Tandem_Repeat 16755 16779 50 + . . scaffold634 GLEAN mRNA 18018 18097 0.999899 + . ID=CGI_10004698; scaffold634 TRF Tandem_Repeat 18018 18097 160 + . . scaffold634 GLEAN mRNA 28570 28733 0.999899 + . ID=CGI_10004698; scaffold634 TRF Tandem_Repeat 28570 28733 202 + . . scaffold634 GLEAN mRNA 28575 28758 0.999899 + . ID=CGI_10004698; scaffold634 TRF Tandem_Repeat 28575 28758 199 + . . scaffold634 GLEAN mRNA 28794 28968 0.999899 + . ID=CGI_10004698; scaffold634 TRF Tandem_Repeat 28794 28968 127 + . . scaffold634 GLEAN mRNA 28837 28969 0.999899 + . ID=CGI_10004698; scaffold634 TRF Tandem_Repeat 28837 28969 151 + . . scaffold634 GLEAN mRNA 14984 15697 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14984 15697 57 - . . scaffold634 GLEAN mRNA 14207 14629 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14207 14629 95 - . . scaffold634 GLEAN mRNA 15020 15559 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy-Cigr 15020 15559 175 - . . scaffold634 GLEAN mRNA 14255 14755 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14255 14755 66 - . . scaffold634 GLEAN mRNA 14117 14698 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14117 14698 54 - . . scaffold634 GLEAN mRNA 14792 15538 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14792 15538 131 - . . scaffold1231 GLEAN mRNA 33634 33740 0.489584 + . ID=CGI_10004702; scaffold1231 TRF Tandem_Repeat 33634 33740 142 + . . scaffold1231 GLEAN mRNA 35344 35489 0.489584 + . ID=CGI_10004702; scaffold1231 TRF Tandem_Repeat 35344 35489 94 + . . scaffold1231 GLEAN mRNA 35399 35489 0.489584 + . ID=CGI_10004702; scaffold1231 TRF Tandem_Repeat 35399 35489 146 + . . scaffold1231 GLEAN mRNA 88666 88787 0.93438 + . ID=CGI_10004703; scaffold1231 TRF Tandem_Repeat 88666 88787 88 + . . scaffold1231 GLEAN mRNA 92195 92375 0.93438 + . ID=CGI_10004703; scaffold1231 TRF Tandem_Repeat 92195 92375 105 + . . scaffold1231 GLEAN mRNA 94085 94145 0.93438 + . ID=CGI_10004703; scaffold1231 TRF Tandem_Repeat 94085 94145 68 + . . scaffold1231 GLEAN mRNA 94812 94842 0.93438 + . ID=CGI_10004703; scaffold1231 TRF Tandem_Repeat 94812 94842 62 + . . scaffold1231 GLEAN mRNA 101050 101108 0.93438 + . ID=CGI_10004703; scaffold1231 TRF Tandem_Repeat 101050 101108 57 + . . scaffold1231 GLEAN mRNA 101050 101108 0.93438 + . ID=CGI_10004703; scaffold1231 TRF Tandem_Repeat 101050 101108 75 + . . scaffold1231 GLEAN mRNA 105744 105995 0.93438 + . ID=CGI_10004703; scaffold1231 WUBlastX LINE_RTE-BovB 105744 105995 65 + . . scaffold1231 GLEAN mRNA 106436 106615 0.93438 + . ID=CGI_10004703; scaffold1231 WUBlastX LINE_RTE-BovB 106436 106615 57 + . . scaffold1231 GLEAN mRNA 105771 105983 0.93438 + . ID=CGI_10004703; scaffold1231 WUBlastX LINE_RTE-BovB 105771 105983 152 + . . scaffold1231 GLEAN mRNA 106116 106328 0.93438 + . ID=CGI_10004703; scaffold1231 WUBlastX LINE_RTE-BovB 106116 106328 74 + . . scaffold1231 GLEAN mRNA 106264 106434 0.93438 + . ID=CGI_10004703; scaffold1231 WUBlastX LINE_RTE-BovB 106264 106434 36 + . . scaffold132 GLEAN mRNA 102877 103479 0.999415 - . ID=CGI_10004713; scaffold132 WUBlastX LTR_Pao 102877 103479 21 - . . scaffold1575 GLEAN mRNA 13351 13418 0.996819 + . ID=CGI_10004716; scaffold1575 TRF Tandem_Repeat 13351 13418 129 + . . scaffold1575 GLEAN mRNA 62336 62560 0.592949 - . ID=CGI_10004720; scaffold1575 WUBlastX RC_Helitron 62336 62560 88 - . . scaffold1575 GLEAN mRNA 75707 75988 0.544627 + . ID=CGI_10004721; scaffold1575 WUBlastX RC_Helitron 75707 75988 117 + . . scaffold1575 GLEAN mRNA 101330 101374 0.999027 - . ID=CGI_10004722; scaffold1575 TRF Tandem_Repeat 101330 101374 90 + . . scaffold1575 GLEAN mRNA 101330 101374 0.999074 + . ID=CGI_10004723; scaffold1575 TRF Tandem_Repeat 101330 101374 90 + . . scaffold41136 GLEAN mRNA 13864 13908 0.93749 - . ID=CGI_10004724; scaffold41136 TRF Tandem_Repeat 13864 13908 72 + . . scaffold41136 GLEAN mRNA 13864 13908 0.49659 + . ID=CGI_10004725; scaffold41136 TRF Tandem_Repeat 13864 13908 72 + . . scaffold41136 GLEAN mRNA 25736 25774 0.49659 + . ID=CGI_10004725; scaffold41136 TRF Tandem_Repeat 25736 25774 51 + . . scaffold41136 GLEAN mRNA 25944 26799 0.49659 + . ID=CGI_10004725; scaffold41136 TRF Tandem_Repeat 25944 26799 1298 + . . scaffold41136 GLEAN mRNA 42617 42644 0.49659 + . ID=CGI_10004725; scaffold41136 TRF Tandem_Repeat 42617 42644 56 + . . scaffold41136 GLEAN mRNA 47055 47117 0.49659 + . ID=CGI_10004725; scaffold41136 TRF Tandem_Repeat 47055 47117 117 + . . scaffold41136 GLEAN mRNA 66318 66369 0.49659 + . ID=CGI_10004725; scaffold41136 TRF Tandem_Repeat 66318 66369 59 + . . scaffold41136 GLEAN mRNA 66323 66372 0.49659 + . ID=CGI_10004725; scaffold41136 TRF Tandem_Repeat 66323 66372 64 + . . scaffold41136 GLEAN mRNA 66343 66372 0.49659 + . ID=CGI_10004725; scaffold41136 TRF Tandem_Repeat 66343 66372 51 + . . scaffold41136 GLEAN mRNA 69605 69640 0.49659 + . ID=CGI_10004725; scaffold41136 TRF Tandem_Repeat 69605 69640 72 + . . scaffold41136 GLEAN mRNA 69951 69983 0.49659 + . ID=CGI_10004725; scaffold41136 TRF Tandem_Repeat 69951 69983 66 + . . scaffold41136 GLEAN mRNA 74043 74098 0.49659 + . ID=CGI_10004725; scaffold41136 TRF Tandem_Repeat 74043 74098 112 + . . scaffold1725 GLEAN mRNA 37415 37843 0.771905 - . ID=CGI_10004728; scaffold1725 WUBlastX DNA_IS4EU 37415 37843 51 - . . scaffold1725 GLEAN mRNA 49892 49900 0.999275 - . ID=CGI_10004730; scaffold1725 WUBlastX LTR_Gypsy 49817 49900 47 + . . scaffold1725 GLEAN mRNA 105456 105575 0.879445 + . ID=CGI_10004731; scaffold1725 TRF Tandem_Repeat 105456 105575 59 + . . scaffold1725 GLEAN mRNA 107151 107270 0.879445 + . ID=CGI_10004731; scaffold1725 TRF Tandem_Repeat 107151 107270 75 + . . scaffold1781 GLEAN mRNA 34398 34455 0.800884 + . ID=CGI_10004734; scaffold1781 TRF Tandem_Repeat 34398 34455 73 + . . scaffold1781 GLEAN mRNA 34399 34452 0.800884 + . ID=CGI_10004734; scaffold1781 TRF Tandem_Repeat 34399 34452 56 + . . scaffold1781 GLEAN mRNA 35878 36755 0.800884 + . ID=CGI_10004734; scaffold1781 TRF Tandem_Repeat 35878 36755 1248 + . . scaffold1781 GLEAN mRNA 63389 63434 0.836164 - . ID=CGI_10004736; scaffold1781 TRF Tandem_Repeat 63389 63434 92 + . . scaffold1781 GLEAN mRNA 70564 70611 0.844806 - . ID=CGI_10004737; scaffold1781 TRF Tandem_Repeat 70564 70611 60 + . . scaffold1781 GLEAN mRNA 70564 70611 0.844806 - . ID=CGI_10004737; scaffold1781 TRF Tandem_Repeat 70564 70611 60 + . . scaffold1781 GLEAN mRNA 70564 70611 0.844806 - . ID=CGI_10004737; scaffold1781 TRF Tandem_Repeat 70564 70611 60 + . . scaffold1781 GLEAN mRNA 70961 71010 0.844806 - . ID=CGI_10004737; scaffold1781 TRF Tandem_Repeat 70961 71010 100 + . . scaffold1781 GLEAN mRNA 78085 78140 0.844806 - . ID=CGI_10004737; scaffold1781 TRF Tandem_Repeat 78085 78140 112 + . . scaffold866 GLEAN mRNA 22532 22612 0.996072 + . ID=CGI_10004740; scaffold866 TRF Tandem_Repeat 22532 22612 162 + . . scaffold866 GLEAN mRNA 30818 30861 0.996072 + . ID=CGI_10004740; scaffold866 TRF Tandem_Repeat 30818 30861 88 + . . scaffold866 GLEAN mRNA 45276 45438 0.734569 + . ID=CGI_10004741; scaffold866 TRF Tandem_Repeat 45276 45438 287 + . . scaffold866 GLEAN mRNA 47602 47970 0.6496 + . ID=CGI_10004742; scaffold866 WUBlastX DNA_TcMar-Tc2 47602 47970 89 + . . scaffold866 GLEAN mRNA 47452 47958 0.6496 + . ID=CGI_10004742; scaffold866 WUBlastX DNA_TcMar-Tc2 47452 47958 54 + . . scaffold866 GLEAN mRNA 54357 54409 0.554554 + . ID=CGI_10004743; scaffold866 TRF Tandem_Repeat 54357 54409 106 + . . scaffold866 GLEAN mRNA 57077 57186 0.999981 + . ID=CGI_10004744; scaffold866 TRF Tandem_Repeat 57077 57186 197 + . . scaffold866 GLEAN mRNA 57077 57186 0.842996 - . ID=CGI_10004745; scaffold866 TRF Tandem_Repeat 57077 57186 197 + . . scaffold866 GLEAN mRNA 60620 60669 0.842996 - . ID=CGI_10004745; scaffold866 TRF Tandem_Repeat 60620 60669 100 + . . scaffold866 GLEAN mRNA 62786 63508 0.842996 - . ID=CGI_10004745; scaffold866 TRF Tandem_Repeat 62786 63508 1091 + . . scaffold866 GLEAN mRNA 68675 68707 0.842996 - . ID=CGI_10004745; scaffold866 TRF Tandem_Repeat 68675 68707 57 + . . scaffold866 GLEAN mRNA 90552 90598 0.993209 + . ID=CGI_10004749; scaffold866 TRF Tandem_Repeat 90552 90598 85 + . . scaffold866 GLEAN mRNA 92924 92984 0.993209 + . ID=CGI_10004749; scaffold866 TRF Tandem_Repeat 92924 92984 122 + . . scaffold866 GLEAN mRNA 94615 95031 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX LINE_RTE-X 94615 95031 108 + . . scaffold866 GLEAN mRNA 87388 87609 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX DNA_Sola 87388 87609 43 + . . scaffold866 GLEAN mRNA 94615 94965 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX LINE_RTE-X 94615 94965 193 + . . scaffold866 GLEAN mRNA 95025 95159 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX LINE_RTE-X 95025 95159 66 + . . scaffold866 GLEAN mRNA 95287 95562 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX LINE_RTE-X 95287 95562 95 + . . scaffold866 GLEAN mRNA 95666 95749 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX LINE_RTE-X 95666 95749 48 + . . scaffold866 GLEAN mRNA 91547 91723 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX DNA_Sola 91547 91723 109 + . . scaffold866 GLEAN mRNA 87454 87627 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX DNA_Sola 87454 87627 86 + . . scaffold866 GLEAN mRNA 95251 95469 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX LINE_L2 95251 95469 32 + . . scaffold866 GLEAN mRNA 106102 106141 0.993209 + . ID=CGI_10004749; scaffold866 TRF Tandem_Repeat 106102 106141 64 + . . scaffold1078 GLEAN mRNA 20466 20583 0.467606 + . ID=CGI_10004751; scaffold1078 TRF Tandem_Repeat 20466 20583 141 + . . scaffold1078 GLEAN mRNA 35804 35845 0.865609 + . ID=CGI_10004752; scaffold1078 TRF Tandem_Repeat 35804 35845 84 + . . scaffold1078 GLEAN mRNA 41859 41926 0.865609 + . ID=CGI_10004752; scaffold1078 TRF Tandem_Repeat 41859 41926 66 + . . scaffold1498 GLEAN mRNA 1432 1462 0.844003 + . ID=CGI_10004755; scaffold1498 TRF Tandem_Repeat 1432 1462 62 + . . scaffold1498 GLEAN mRNA 2101 2577 0.844003 + . ID=CGI_10004755; scaffold1498 WUBlastX LINE_L2 2101 2577 97 - . . scaffold1498 GLEAN mRNA 36282 36325 0.284109 + . ID=CGI_10004756; scaffold1498 TRF Tandem_Repeat 36282 36325 88 + . . scaffold1498 GLEAN mRNA 36947 36992 0.284109 + . ID=CGI_10004756; scaffold1498 TRF Tandem_Repeat 36947 36992 92 + . . scaffold1498 GLEAN mRNA 37935 37974 0.284109 + . ID=CGI_10004756; scaffold1498 TRF Tandem_Repeat 37935 37974 80 + . . scaffold1498 GLEAN mRNA 38415 38444 0.284109 + . ID=CGI_10004756; scaffold1498 TRF Tandem_Repeat 38415 38444 51 + . . scaffold1498 GLEAN mRNA 43832 43857 0.284109 + . ID=CGI_10004756; scaffold1498 TRF Tandem_Repeat 43832 43857 52 + . . scaffold1498 GLEAN mRNA 47599 47624 0.284109 + . ID=CGI_10004756; scaffold1498 TRF Tandem_Repeat 47599 47624 52 + . . scaffold1498 GLEAN mRNA 67979 68025 0.907333 - . ID=CGI_10004757; scaffold1498 TRF Tandem_Repeat 67979 68025 85 + . . scaffold1498 GLEAN mRNA 92200 92510 0.999953 + . ID=CGI_10004758; scaffold1498 TRF Tandem_Repeat 92200 92510 223 + . . scaffold1498 GLEAN mRNA 90180 91052 0.999953 + . ID=CGI_10004758; scaffold1498 WUBlastX LINE_L2 90180 91052 450 - . . scaffold1498 GLEAN mRNA 91010 91402 0.999953 + . ID=CGI_10004758; scaffold1498 WUBlastX LINE_L2 91010 91402 169 - . . scaffold1498 GLEAN mRNA 91387 91611 0.999953 + . ID=CGI_10004758; scaffold1498 WUBlastX LINE_L2 91387 91611 139 - . . scaffold41164 GLEAN mRNA 19457 19528 0.995863 + . ID=CGI_10004760; scaffold41164 TRF Tandem_Repeat 19457 19528 135 + . . scaffold41164 GLEAN mRNA 20936 21043 0.995863 + . ID=CGI_10004760; scaffold41164 TRF Tandem_Repeat 20936 21043 128 + . . scaffold41164 GLEAN mRNA 44968 45108 0.999053 + . ID=CGI_10004761; scaffold41164 WUBlastX DNA_hAT 44968 45108 66 + . . scaffold41164 GLEAN mRNA 45455 45652 0.999053 + . ID=CGI_10004761; scaffold41164 WUBlastX DNA_hAT 45455 45652 64 + . . scaffold41164 GLEAN mRNA 94194 94247 0.95986 - . ID=CGI_10004764; scaffold41164 TRF Tandem_Repeat 94194 94247 108 + . . scaffold41164 GLEAN mRNA 86818 87090 0.95986 - . ID=CGI_10004764; scaffold41164 WUBlastX LINE_RTE-X 86818 87090 76 + . . scaffold41164 GLEAN mRNA 86755 87042 0.95986 - . ID=CGI_10004764; scaffold41164 WUBlastX LINE_RTE-X 86755 87042 45 + . . scaffold41164 GLEAN mRNA 86818 87024 0.95986 - . ID=CGI_10004764; scaffold41164 WUBlastX LINE_RTE-X 86818 87024 84 + . . scaffold41164 GLEAN mRNA 99688 99738 0.95986 - . ID=CGI_10004764; scaffold41164 TRF Tandem_Repeat 99688 99738 93 + . . scaffold1107 GLEAN mRNA 28019 28079 0.797312 + . ID=CGI_10004768; scaffold1107 TRF Tandem_Repeat 28019 28079 104 + . . scaffold1107 GLEAN mRNA 28019 28082 0.797312 + . ID=CGI_10004768; scaffold1107 TRF Tandem_Repeat 28019 28082 74 + . . scaffold1107 GLEAN mRNA 31415 32054 0.797312 + . ID=CGI_10004768; scaffold1107 TRF Tandem_Repeat 31415 32054 598 + . . scaffold1107 GLEAN mRNA 42662 43069 0.797312 + . ID=CGI_10004768; scaffold1107 WUBlastX LINE_L1-Tx1 42662 43069 65 - . . scaffold1107 GLEAN mRNA 43030 43113 0.797312 + . ID=CGI_10004768; scaffold1107 WUBlastX LINE_L1-Tx1 43030 43113 35 - . . scaffold1107 GLEAN mRNA 42293 42397 0.797312 + . ID=CGI_10004768; scaffold1107 WUBlastX LINE_L1 42293 42397 23 - . . scaffold1107 GLEAN mRNA 42599 42946 0.797312 + . ID=CGI_10004768; scaffold1107 WUBlastX LINE_L1 42599 42946 80 - . . scaffold1107 GLEAN mRNA 42683 42988 0.797312 + . ID=CGI_10004768; scaffold1107 WUBlastX LINE_L1 42683 42988 81 - . . scaffold41162 GLEAN mRNA 4895 5860 0.81416 + . ID=CGI_10004774; scaffold41162 TRF Tandem_Repeat 4895 5860 1468 + . . scaffold41162 GLEAN mRNA 10419 10465 0.81416 + . ID=CGI_10004774; scaffold41162 TRF Tandem_Repeat 10419 10465 94 + . . scaffold41162 GLEAN mRNA 70872 71267 0.651134 + . ID=CGI_10004776; scaffold41162 WUBlastX DNA_IS4EU 70872 71267 76 + . . scaffold41162 GLEAN mRNA 71457 71618 0.651134 + . ID=CGI_10004776; scaffold41162 WUBlastX DNA_IS4EU 71457 71618 27 + . . scaffold41162 GLEAN mRNA 93607 94280 0.526733 + . ID=CGI_10004777; scaffold41162 TRF Tandem_Repeat 93607 94280 685 + . . scaffold41162 GLEAN mRNA 89296 89577 0.526733 + . ID=CGI_10004777; scaffold41162 WUBlastX LTR_Gypsy-Cigr 89296 89577 147 - . . scaffold41162 GLEAN mRNA 89894 90043 0.526733 + . ID=CGI_10004777; scaffold41162 WUBlastX LTR_Gypsy-Cigr 89894 90043 132 - . . scaffold41162 GLEAN mRNA 88937 90127 0.526733 + . ID=CGI_10004777; scaffold41162 WUBlastX LTR_Gypsy 88937 90127 87 - . . scaffold41162 GLEAN mRNA 88562 89326 0.526733 + . ID=CGI_10004777; scaffold41162 WUBlastX LTR_Gypsy 88562 89326 185 - . . scaffold41162 GLEAN mRNA 88697 89347 0.526733 + . ID=CGI_10004777; scaffold41162 WUBlastX LTR_Gypsy-Cigr 88697 89347 315 - . . scaffold41162 GLEAN mRNA 89332 89649 0.526733 + . ID=CGI_10004777; scaffold41162 WUBlastX LTR_Gypsy-Cigr 89332 89649 145 - . . scaffold41162 GLEAN mRNA 90045 90170 0.526733 + . ID=CGI_10004777; scaffold41162 WUBlastX LTR_Gypsy 90045 90170 113 - . . scaffold41162 GLEAN mRNA 90198 90443 0.526733 + . ID=CGI_10004777; scaffold41162 WUBlastX LTR_ERV1 90198 90443 27 - . . scaffold1067 GLEAN mRNA 15311 15489 0.511419 - . ID=CGI_10004779; scaffold1067 TRF Tandem_Repeat 15311 15489 281 + . . scaffold1067 GLEAN mRNA 16547 16920 0.511419 - . ID=CGI_10004779; scaffold1067 TRF Tandem_Repeat 16547 16920 434 + . . scaffold1067 GLEAN mRNA 21189 21387 0.511419 - . ID=CGI_10004779; scaffold1067 TRF Tandem_Repeat 21189 21387 283 + . . scaffold1067 GLEAN mRNA 27820 27856 0.511419 - . ID=CGI_10004779; scaffold1067 TRF Tandem_Repeat 27820 27856 74 + . . scaffold1067 GLEAN mRNA 33181 33225 0.511419 - . ID=CGI_10004779; scaffold1067 TRF Tandem_Repeat 33181 33225 54 + . . scaffold1067 GLEAN mRNA 102862 102923 0.615405 - . ID=CGI_10004783; scaffold1067 TRF Tandem_Repeat 102862 102923 97 + . . scaffold1067 GLEAN mRNA 107559 107942 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX LINE_L1-Tx1 107559 107942 152 - . . scaffold1067 GLEAN mRNA 107490 107942 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX LINE_L1-Tx1 107490 107942 61 - . . scaffold1067 GLEAN mRNA 98982 100034 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_En-Spm 98982 100034 247 + . . scaffold1067 GLEAN mRNA 108034 108411 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX LINE_L1-Tx1 108034 108411 76 - . . scaffold1067 GLEAN mRNA 99666 100829 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_En-Spm 99666 100829 276 + . . scaffold1067 GLEAN mRNA 102554 102847 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 102554 102847 32 - . . scaffold1067 GLEAN mRNA 108034 108327 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX LINE_L1-Tx1 108034 108327 97 - . . scaffold1067 GLEAN mRNA 102989 103177 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 102989 103177 63 - . . scaffold1067 GLEAN mRNA 103426 103674 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 103426 103674 104 - . . scaffold1067 GLEAN mRNA 103815 104132 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 103815 104132 217 - . . scaffold1067 GLEAN mRNA 108025 108489 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX LINE_L1 108025 108489 73 - . . scaffold1067 GLEAN mRNA 101971 102387 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 101971 102387 86 - . . scaffold1067 GLEAN mRNA 102599 102775 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 102599 102775 107 - . . scaffold1067 GLEAN mRNA 104287 104616 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 104287 104616 44 - . . scaffold1067 GLEAN mRNA 101968 102288 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 101968 102288 124 - . . scaffold1067 GLEAN mRNA 98805 99824 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_En-Spm 98805 99824 98 + . . scaffold1067 GLEAN mRNA 107568 108026 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX LINE_L1-Tx1 107568 108026 145 - . . scaffold1067 GLEAN mRNA 103040 103210 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 103040 103210 44 - . . scaffold1067 GLEAN mRNA 103863 104180 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 103863 104180 25 - . . scaffold1067 GLEAN mRNA 102554 102739 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_Sola 102554 102739 34 - . . scaffold41206 GLEAN mRNA 96001 96773 0.995535 - . ID=CGI_10004793; scaffold41206 TRF Tandem_Repeat 96001 96773 1189 + . . scaffold41206 GLEAN mRNA 92089 92313 0.995535 - . ID=CGI_10004793; scaffold41206 WUBlastX DNA_hAT-Blackja 92089 92313 50 - . . scaffold41174 GLEAN mRNA 39079 40663 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 39079 40663 2176 + . . scaffold41174 GLEAN mRNA 39803 40663 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 39803 40663 1085 + . . scaffold41174 GLEAN mRNA 41354 41470 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 41354 41470 94 + . . scaffold41174 GLEAN mRNA 41892 41943 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 41892 41943 95 + . . scaffold41174 GLEAN mRNA 57459 57491 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 57459 57491 66 + . . scaffold41174 GLEAN mRNA 58556 58587 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 58556 58587 64 + . . scaffold41174 GLEAN mRNA 60706 61429 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 60706 61429 1000 + . . scaffold41174 GLEAN mRNA 61484 62086 0.479824 - . ID=CGI_10004794; scaffold41174 WUBlastX LINE_RTE-X 61484 62086 103 + . . scaffold41174 GLEAN mRNA 61610 61990 0.479824 - . ID=CGI_10004794; scaffold41174 WUBlastX LINE_RTE-X 61610 61990 114 + . . scaffold41174 GLEAN mRNA 66656 66721 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 66656 66721 50 + . . scaffold41174 GLEAN mRNA 68746 68806 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 68746 68806 95 + . . scaffold41174 GLEAN mRNA 69401 69622 0.479824 - . ID=CGI_10004794; scaffold41174 WUBlastX LINE_RTE-X 69401 69622 135 + . . scaffold41174 GLEAN mRNA 69562 70299 0.479824 - . ID=CGI_10004794; scaffold41174 WUBlastX LINE_RTE-X 69562 70299 103 + . . scaffold41174 GLEAN mRNA 69000 69470 0.479824 - . ID=CGI_10004794; scaffold41174 WUBlastX LINE_RTE-X 69000 69470 200 + . . scaffold41174 GLEAN mRNA 68925 69392 0.479824 - . ID=CGI_10004794; scaffold41174 WUBlastX LINE_DRE 68925 69392 34 + . . scaffold41174 GLEAN mRNA 82697 83316 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 82697 83316 168 + . . scaffold41174 GLEAN mRNA 82696 83316 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 82696 83316 489 + . . scaffold41174 GLEAN mRNA 83138 83336 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 83138 83336 267 + . . scaffold41174 GLEAN mRNA 83352 83382 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 83352 83382 55 + . . scaffold41174 GLEAN mRNA 86027 87114 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 86027 87114 1908 + . . scaffold41174 GLEAN mRNA 102514 102557 1 - . ID=CGI_10004795; scaffold41174 TRF Tandem_Repeat 102514 102557 52 + . . scaffold41174 GLEAN mRNA 102514 102558 1 - . ID=CGI_10004795; scaffold41174 TRF Tandem_Repeat 102514 102558 63 + . . scaffold1811 GLEAN mRNA 66420 67040 1 - . ID=CGI_10004796; scaffold1811 WUBlastX DNA_Kolobok-IS4 66420 67295 445 - . . scaffold41210 GLEAN mRNA 7413 7516 0.999993 + . ID=CGI_10004798; scaffold41210 TRF Tandem_Repeat 7413 7516 190 + . . scaffold41210 GLEAN mRNA 10854 10885 0.999993 + . ID=CGI_10004798; scaffold41210 TRF Tandem_Repeat 10854 10885 55 + . . scaffold41210 GLEAN mRNA 4960 5112 0.999993 + . ID=CGI_10004798; scaffold41210 WUBlastX LINE_RTE-X 4960 5112 31 - . . scaffold41210 GLEAN mRNA 70884 70924 1 - . ID=CGI_10004803; scaffold41210 TRF Tandem_Repeat 70884 70924 82 + . . scaffold41210 GLEAN mRNA 102622 102795 0.732703 + . ID=CGI_10004806; scaffold41210 WUBlastX LTR_Caulimoviru 102322 102795 26 + . . scaffold41210 GLEAN mRNA 102622 102654 0.732703 + . ID=CGI_10004806; scaffold41210 WUBlastX LTR_Gypsy-Cigr 102277 102654 72 + . . scaffold41210 GLEAN mRNA 102673 102702 0.732703 + . ID=CGI_10004806; scaffold41210 WUBlastX LTR_Gypsy 102673 102702 27 + . . scaffold41214 GLEAN mRNA 110152 110184 0.932558 + . ID=CGI_10004810; scaffold41214 TRF Tandem_Repeat 110152 110184 66 + . . scaffold41212 GLEAN mRNA 76465 76546 0.544852 + . ID=CGI_10004813; scaffold41212 TRF Tandem_Repeat 76465 76546 78 + . . scaffold41212 GLEAN mRNA 98662 98999 0.992173 + . ID=CGI_10004816; scaffold41212 TRF Tandem_Repeat 98662 98999 235 + . . scaffold41212 GLEAN mRNA 98690 99003 0.992173 + . ID=CGI_10004816; scaffold41212 TRF Tandem_Repeat 98690 99003 352 + . . scaffold41212 GLEAN mRNA 99009 99033 0.992173 + . ID=CGI_10004816; scaffold41212 TRF Tandem_Repeat 99009 99033 50 + . . scaffold1253 GLEAN mRNA 27556 27667 0.331456 + . ID=CGI_10004818; scaffold1253 TRF Tandem_Repeat 27556 27667 82 + . . scaffold1253 GLEAN mRNA 27830 27893 0.331456 + . ID=CGI_10004818; scaffold1253 TRF Tandem_Repeat 27830 27893 83 + . . scaffold1253 GLEAN mRNA 27820 27900 0.331456 + . ID=CGI_10004818; scaffold1253 TRF Tandem_Repeat 27820 27900 72 + . . scaffold1253 GLEAN mRNA 38440 38466 0.331456 + . ID=CGI_10004818; scaffold1253 TRF Tandem_Repeat 38440 38466 54 + . . scaffold1253 GLEAN mRNA 41868 43061 0.331456 + . ID=CGI_10004818; scaffold1253 WUBlastX LTR_Gypsy 41868 43061 149 + . . scaffold1253 GLEAN mRNA 44178 44711 0.331456 + . ID=CGI_10004818; scaffold1253 WUBlastX LTR_Gypsy 44178 44711 63 + . . scaffold1253 GLEAN mRNA 42057 43676 0.331456 + . ID=CGI_10004818; scaffold1253 WUBlastX LTR_Gypsy 42057 43676 1348 + . . scaffold1253 GLEAN mRNA 43788 43817 0.331456 + . ID=CGI_10004818; scaffold1253 WUBlastX LTR_Copia 43788 43817 22 + . . scaffold1253 GLEAN mRNA 41178 41243 0.331456 + . ID=CGI_10004818; scaffold1253 WUBlastX LTR_Gypsy 41178 41243 29 + . . scaffold1253 GLEAN mRNA 41190 41243 0.331456 + . ID=CGI_10004818; scaffold1253 WUBlastX LTR_Gypsy 41190 41243 38 + . . scaffold1253 GLEAN mRNA 105893 106061 0.634382 - . ID=CGI_10004823; scaffold1253 TRF Tandem_Repeat 105893 106061 302 + . . scaffold1253 GLEAN mRNA 109349 109537 0.634382 - . ID=CGI_10004823; scaffold1253 WUBlastX LINE_RTE-BovB 109349 109537 51 + . . scaffold1253 GLEAN mRNA 109340 109591 0.634382 - . ID=CGI_10004823; scaffold1253 WUBlastX LINE_RTE-BovB 109340 109591 47 + . . scaffold178 GLEAN mRNA 58965 59025 0.668155 - . ID=CGI_10004826; scaffold178 TRF Tandem_Repeat 58965 59025 70 + . . scaffold178 GLEAN mRNA 58965 59013 0.668155 - . ID=CGI_10004826; scaffold178 TRF Tandem_Repeat 58965 59013 66 + . . scaffold178 GLEAN mRNA 58971 59026 0.668155 - . ID=CGI_10004826; scaffold178 TRF Tandem_Repeat 58971 59026 53 + . . scaffold178 GLEAN mRNA 58969 59027 0.668155 - . ID=CGI_10004826; scaffold178 TRF Tandem_Repeat 58969 59027 64 + . . scaffold178 GLEAN mRNA 83794 83865 0.668155 - . ID=CGI_10004826; scaffold178 TRF Tandem_Repeat 83794 83865 144 + . . scaffold178 GLEAN mRNA 84900 84941 0.668155 - . ID=CGI_10004826; scaffold178 TRF Tandem_Repeat 84900 84941 84 + . . scaffold178 GLEAN mRNA 86352 86416 0.668155 - . ID=CGI_10004826; scaffold178 TRF Tandem_Repeat 86352 86416 58 + . . scaffold178 GLEAN mRNA 86448 86527 0.668155 - . ID=CGI_10004826; scaffold178 TRF Tandem_Repeat 86448 86527 65 + . . scaffold178 GLEAN mRNA 89786 89850 0.668155 - . ID=CGI_10004826; scaffold178 TRF Tandem_Repeat 89786 89850 112 + . . scaffold178 GLEAN mRNA 97082 97108 0.461285 - . ID=CGI_10004828; scaffold178 TRF Tandem_Repeat 97082 97108 54 + . . scaffold178 GLEAN mRNA 104099 104686 0.461285 - . ID=CGI_10004828; scaffold178 WUBlastX LINE_Penelope 104099 104686 69 - . . scaffold178 GLEAN mRNA 103887 104150 0.461285 - . ID=CGI_10004828; scaffold178 WUBlastX LINE_Penelope 103887 104150 72 - . . scaffold178 GLEAN mRNA 103716 104120 0.461285 - . ID=CGI_10004828; scaffold178 WUBlastX LINE_Penelope 103716 104120 65 - . . scaffold178 GLEAN mRNA 104102 104359 0.461285 - . ID=CGI_10004828; scaffold178 WUBlastX LINE_Penelope 104102 104359 96 - . . scaffold178 GLEAN mRNA 104707 104865 0.461285 - . ID=CGI_10004828; scaffold178 WUBlastX LINE_Penelope 104707 104865 70 - . . scaffold178 GLEAN mRNA 104931 105107 0.461285 - . ID=CGI_10004828; scaffold178 WUBlastX LINE_Penelope 104931 105107 48 - . . scaffold178 GLEAN mRNA 104707 104895 0.461285 - . ID=CGI_10004828; scaffold178 WUBlastX LINE_Penelope 104707 104895 45 - . . scaffold178 GLEAN mRNA 104689 104937 0.461285 - . ID=CGI_10004828; scaffold178 WUBlastX LINE_Penelope 104689 104937 32 - . . scaffold154 GLEAN mRNA 36330 36357 0.920299 - . ID=CGI_10004830; scaffold154 TRF Tandem_Repeat 36330 36357 56 + . . scaffold154 GLEAN mRNA 36537 36624 0.920299 - . ID=CGI_10004830; scaffold154 TRF Tandem_Repeat 36537 36624 108 + . . scaffold154 GLEAN mRNA 49590 49633 0.702385 + . ID=CGI_10004832; scaffold154 TRF Tandem_Repeat 49590 49633 88 + . . scaffold154 GLEAN mRNA 50822 50863 0.702385 + . ID=CGI_10004832; scaffold154 TRF Tandem_Repeat 50822 50863 59 + . . scaffold154 GLEAN mRNA 51036 51887 0.702385 + . ID=CGI_10004832; scaffold154 TRF Tandem_Repeat 51036 51887 1510 + . . scaffold154 GLEAN mRNA 61506 61543 1 - . ID=CGI_10004833; scaffold154 TRF Tandem_Repeat 61506 61543 76 + . . scaffold154 GLEAN mRNA 61633 61660 1 - . ID=CGI_10004833; scaffold154 TRF Tandem_Repeat 61633 61660 56 + . . scaffold154 GLEAN mRNA 56481 56666 1 - . ID=CGI_10004833; scaffold154 WUBlastX DNA_Harbinger 56481 56666 25 - . . scaffold154 GLEAN mRNA 57655 57795 1 - . ID=CGI_10004833; scaffold154 WUBlastX DNA_Harbinger 57655 57795 40 - . . scaffold154 GLEAN mRNA 74700 75709 0.844002 + . ID=CGI_10004834; scaffold154 TRF Tandem_Repeat 74700 75709 1389 + . . scaffold154 GLEAN mRNA 92073 92115 0.999674 - . ID=CGI_10004835; scaffold154 TRF Tandem_Repeat 92073 92115 50 + . . scaffold154 GLEAN mRNA 92073 92115 0.999674 - . ID=CGI_10004835; scaffold154 TRF Tandem_Repeat 92073 92115 59 + . . scaffold154 GLEAN mRNA 93568 93645 0.999674 - . ID=CGI_10004835; scaffold154 TRF Tandem_Repeat 93568 93645 138 + . . scaffold41296 GLEAN mRNA 9930 9974 0.719952 - . ID=CGI_10004838; scaffold41296 TRF Tandem_Repeat 9930 9974 90 + . . scaffold41296 GLEAN mRNA 10439 10469 0.719952 - . ID=CGI_10004838; scaffold41296 TRF Tandem_Repeat 10439 10469 53 + . . scaffold41296 GLEAN mRNA 12229 12976 0.719952 - . ID=CGI_10004838; scaffold41296 TRF Tandem_Repeat 12229 12976 1088 + . . scaffold41296 GLEAN mRNA 64666 64821 0.3331 - . ID=CGI_10004841; scaffold41296 TRF Tandem_Repeat 64666 64821 163 + . . scaffold41296 GLEAN mRNA 67044 67628 0.3331 - . ID=CGI_10004841; scaffold41296 TRF Tandem_Repeat 67044 67628 699 + . . scaffold41296 GLEAN mRNA 67051 67628 0.3331 - . ID=CGI_10004841; scaffold41296 TRF Tandem_Repeat 67051 67628 674 + . . scaffold41296 GLEAN mRNA 74173 75120 0.3331 - . ID=CGI_10004841; scaffold41296 TRF Tandem_Repeat 74173 75120 1441 + . . scaffold41296 GLEAN mRNA 88321 88387 0.3331 - . ID=CGI_10004841; scaffold41296 TRF Tandem_Repeat 88321 88387 134 + . . scaffold41296 GLEAN mRNA 97281 97529 0.3331 - . ID=CGI_10004841; scaffold41296 TRF Tandem_Repeat 97281 97529 331 + . . scaffold41296 GLEAN mRNA 97281 97529 0.3331 - . ID=CGI_10004841; scaffold41296 TRF Tandem_Repeat 97281 97529 367 + . . scaffold1489 GLEAN mRNA 41270 41376 0.267397 - . ID=CGI_10004845; scaffold1489 TRF Tandem_Repeat 41270 41376 171 + . . scaffold1489 GLEAN mRNA 87735 87786 0.814164 - . ID=CGI_10004848; scaffold1489 TRF Tandem_Repeat 87735 87786 52 + . . scaffold1489 GLEAN mRNA 88810 88870 0.814164 - . ID=CGI_10004848; scaffold1489 TRF Tandem_Repeat 88810 88870 61 + . . scaffold1489 GLEAN mRNA 88806 88869 0.814164 - . ID=CGI_10004848; scaffold1489 TRF Tandem_Repeat 88806 88869 66 + . . scaffold1489 GLEAN mRNA 90883 90964 0.814164 - . ID=CGI_10004848; scaffold1489 TRF Tandem_Repeat 90883 90964 157 + . . scaffold41220 GLEAN mRNA 10658 10714 0.802536 + . ID=CGI_10004850; scaffold41220 TRF Tandem_Repeat 10658 10714 114 + . . scaffold41220 GLEAN mRNA 22658 22718 1 - . ID=CGI_10004851; scaffold41220 TRF Tandem_Repeat 22658 22718 113 + . . scaffold41220 GLEAN mRNA 31856 31927 0.971049 + . ID=CGI_10004853; scaffold41220 TRF Tandem_Repeat 31856 31927 144 + . . scaffold41220 GLEAN mRNA 43817 43986 0.971049 + . ID=CGI_10004853; scaffold41220 TRF Tandem_Repeat 43817 43986 88 + . . scaffold41220 GLEAN mRNA 43640 43986 0.971049 + . ID=CGI_10004853; scaffold41220 TRF Tandem_Repeat 43640 43986 419 + . . scaffold41220 GLEAN mRNA 43640 44027 0.971049 + . ID=CGI_10004853; scaffold41220 TRF Tandem_Repeat 43640 44027 467 + . . scaffold41220 GLEAN mRNA 43817 43986 0.999676 - . ID=CGI_10004854; scaffold41220 TRF Tandem_Repeat 43817 43986 88 + . . scaffold41220 GLEAN mRNA 43640 43986 0.999676 - . ID=CGI_10004854; scaffold41220 TRF Tandem_Repeat 43640 43986 419 + . . scaffold41220 GLEAN mRNA 43640 44027 0.999676 - . ID=CGI_10004854; scaffold41220 TRF Tandem_Repeat 43640 44027 467 + . . scaffold41220 GLEAN mRNA 71361 71672 0.470832 - . ID=CGI_10004855; scaffold41220 WUBlastX LINE_L2 71361 71672 40 - . . scaffold41220 GLEAN mRNA 91090 91832 0.998466 + . ID=CGI_10004858; scaffold41220 TRF Tandem_Repeat 91090 91832 625 + . . scaffold41220 GLEAN mRNA 91090 91832 0.998466 + . ID=CGI_10004858; scaffold41220 TRF Tandem_Repeat 91090 91832 788 + . . scaffold41220 GLEAN mRNA 93299 93349 0.998466 + . ID=CGI_10004858; scaffold41220 TRF Tandem_Repeat 93299 93349 93 + . . scaffold41220 GLEAN mRNA 98992 100128 0.998466 + . ID=CGI_10004858; scaffold41220 TRF Tandem_Repeat 98992 100128 1530 + . . scaffold41220 GLEAN mRNA 104571 104624 0.998466 + . ID=CGI_10004858; scaffold41220 TRF Tandem_Repeat 104571 104624 90 + . . scaffold41220 GLEAN mRNA 104571 104625 0.998466 + . ID=CGI_10004858; scaffold41220 TRF Tandem_Repeat 104571 104625 74 + . . scaffold41220 GLEAN mRNA 98992 100128 0.999973 - . ID=CGI_10004860; scaffold41220 TRF Tandem_Repeat 98992 100128 1530 + . . scaffold41220 GLEAN mRNA 104571 104624 0.999973 - . ID=CGI_10004860; scaffold41220 TRF Tandem_Repeat 104571 104624 90 + . . scaffold41220 GLEAN mRNA 104571 104625 0.999973 - . ID=CGI_10004860; scaffold41220 TRF Tandem_Repeat 104571 104625 74 + . . scaffold41228 GLEAN mRNA 16862 18052 0.144447 - . ID=CGI_10004861; scaffold41228 WUBlastX LINE_L1-Tx1 16862 18052 533 + . . scaffold41228 GLEAN mRNA 17788 18456 0.144447 - . ID=CGI_10004861; scaffold41228 WUBlastX LINE_L1-Tx1 17788 18456 303 + . . scaffold41228 GLEAN mRNA 15957 16511 0.144447 - . ID=CGI_10004861; scaffold41228 WUBlastX LINE_L2 15957 16511 135 + . . scaffold41228 GLEAN mRNA 15885 16544 0.144447 - . ID=CGI_10004861; scaffold41228 WUBlastX LINE_L2 15885 16544 76 + . . scaffold41228 GLEAN mRNA 60477 60693 0.746799 + . ID=CGI_10004863; scaffold41228 TRF Tandem_Repeat 60477 60693 185 + . . scaffold1103 GLEAN mRNA 12576 12944 0.836195 - . ID=CGI_10004868; scaffold1103 WUBlastX LINE_L2 12576 12944 43 + . . scaffold1103 GLEAN mRNA 12507 12890 0.836195 - . ID=CGI_10004868; scaffold1103 WUBlastX LINE_CR1 12507 12890 21 + . . scaffold1103 GLEAN mRNA 13836 14642 0.836195 - . ID=CGI_10004868; scaffold1103 WUBlastX LINE_L2 13836 14642 595 + . . scaffold1103 GLEAN mRNA 14639 15520 0.836195 - . ID=CGI_10004868; scaffold1103 WUBlastX LINE_L2 14639 15520 457 + . . scaffold1103 GLEAN mRNA 12970 13848 0.836195 - . ID=CGI_10004868; scaffold1103 WUBlastX LINE_L2 12970 13848 448 + . . scaffold1103 GLEAN mRNA 12648 12971 0.836195 - . ID=CGI_10004868; scaffold1103 WUBlastX LINE_L2 12648 12971 83 + . . scaffold1103 GLEAN mRNA 11747 11803 0.836195 - . ID=CGI_10004868; scaffold1103 WUBlastX LINE_L2 11747 11803 21 + . . scaffold1103 GLEAN mRNA 101428 101502 0.728743 + . ID=CGI_10004873; scaffold1103 TRF Tandem_Repeat 101428 101502 143 + . . scaffold1103 GLEAN mRNA 103078 103110 0.728743 + . ID=CGI_10004873; scaffold1103 TRF Tandem_Repeat 103078 103110 66 + . . scaffold1058 GLEAN mRNA 7317 7352 0.639824 + . ID=CGI_10004874; scaffold1058 TRF Tandem_Repeat 7317 7352 54 + . . scaffold1058 GLEAN mRNA 12363 12662 0.538394 - . ID=CGI_10004875; scaffold1058 WUBlastX LTR_Gypsy 12363 12662 24 - . . scaffold1058 GLEAN mRNA 89834 89997 0.499919 - . ID=CGI_10004879; scaffold1058 TRF Tandem_Repeat 89834 89997 143 + . . scaffold1058 GLEAN mRNA 82221 82583 0.499919 - . ID=CGI_10004879; scaffold1058 WUBlastX DNA_Harbinger 82221 82583 163 + . . scaffold41242 GLEAN mRNA 29411 29434 0.478775 + . ID=CGI_10004880; scaffold41242 WUBlastX LTR_Gypsy 29411 29998 83 + . . scaffold41242 GLEAN mRNA 29405 29434 0.478775 + . ID=CGI_10004880; scaffold41242 WUBlastX LTR_Gypsy 29405 30301 47 + . . scaffold41242 GLEAN mRNA 29519 29998 0.480836 + . ID=CGI_10004881; scaffold41242 WUBlastX LTR_Gypsy 29411 29998 83 + . . scaffold41242 GLEAN mRNA 29519 30064 0.480836 + . ID=CGI_10004881; scaffold41242 WUBlastX LTR_Gypsy 29405 30301 47 + . . scaffold41242 GLEAN mRNA 30075 30290 0.999372 + . ID=CGI_10004882; scaffold41242 WUBlastX LTR_Gypsy 29405 30301 47 + . . scaffold41242 GLEAN mRNA 30209 30290 0.999372 + . ID=CGI_10004882; scaffold41242 WUBlastX LTR_ERV-Lenti 30209 30325 57 + . . scaffold41242 GLEAN mRNA 59862 60869 0.999676 + . ID=CGI_10004884; scaffold41242 TRF Tandem_Repeat 59862 60869 1558 + . . scaffold41242 GLEAN mRNA 61637 61664 0.999676 + . ID=CGI_10004884; scaffold41242 TRF Tandem_Repeat 61637 61664 56 + . . scaffold41242 GLEAN mRNA 83916 83964 0.920529 + . ID=CGI_10004887; scaffold41242 TRF Tandem_Repeat 83916 83964 89 + . . scaffold41242 GLEAN mRNA 85796 85874 0.920529 + . ID=CGI_10004887; scaffold41242 TRF Tandem_Repeat 85796 85874 158 + . . scaffold41242 GLEAN mRNA 101123 101347 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 101123 101347 114 + . . scaffold41242 GLEAN mRNA 100543 100953 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1 100543 100953 28 + . . scaffold41242 GLEAN mRNA 100477 100746 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1 100477 100746 69 + . . scaffold41242 GLEAN mRNA 100537 100785 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 100537 100785 104 + . . scaffold41242 GLEAN mRNA 101942 102304 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 101942 102304 21 + . . scaffold41242 GLEAN mRNA 100322 100459 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1 100322 100459 77 + . . scaffold41242 GLEAN mRNA 101063 101347 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1 101063 101347 69 + . . scaffold41242 GLEAN mRNA 99895 100080 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 99895 100080 72 + . . scaffold41242 GLEAN mRNA 100129 100794 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 100129 100794 38 + . . scaffold41242 GLEAN mRNA 101117 101392 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 101117 101392 107 + . . scaffold41242 GLEAN mRNA 99802 100092 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 99802 100092 40 + . . scaffold41242 GLEAN mRNA 101942 102118 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 101942 102118 53 + . . scaffold1393 GLEAN mRNA 10659 10943 0.544851 - . ID=CGI_10004890; scaffold1393 WUBlastX DNA_Sola 10659 10943 61 + . . scaffold1393 GLEAN mRNA 43233 43288 0.999996 - . ID=CGI_10004891; scaffold1393 TRF Tandem_Repeat 43233 43288 112 + . . scaffold1393 GLEAN mRNA 43672 43722 0.999996 - . ID=CGI_10004891; scaffold1393 TRF Tandem_Repeat 43672 43722 50 + . . scaffold1393 GLEAN mRNA 90281 90324 0.431205 + . ID=CGI_10004897; scaffold1393 TRF Tandem_Repeat 90281 90324 61 + . . scaffold1205 GLEAN mRNA 109767 109997 0.994073 - . ID=CGI_10004904; scaffold1205 WUBlastX DNA_Crypton 109767 109997 90 + . . scaffold1205 GLEAN mRNA 109567 109734 0.994073 - . ID=CGI_10004904; scaffold1205 WUBlastX DNA_Crypton 109567 109734 22 + . . scaffold1205 GLEAN mRNA 110065 110244 0.994073 - . ID=CGI_10004904; scaffold1205 WUBlastX DNA_Crypton 110065 110244 71 + . . scaffold1728 GLEAN mRNA 5218 5279 0.9267 - . ID=CGI_10004906; scaffold1728 TRF Tandem_Repeat 5218 5279 63 + . . scaffold1728 GLEAN mRNA 19723 19758 0.9267 - . ID=CGI_10004906; scaffold1728 TRF Tandem_Repeat 19723 19758 63 + . . scaffold1728 GLEAN mRNA 80422 80448 0.992855 - . ID=CGI_10004910; scaffold1728 TRF Tandem_Repeat 80422 80448 54 + . . scaffold1728 GLEAN mRNA 97100 97144 0.629207 + . ID=CGI_10004912; scaffold1728 TRF Tandem_Repeat 97100 97144 90 + . . scaffold806 GLEAN mRNA 14191 14757 0.934338 + . ID=CGI_10004919; scaffold806 WUBlastX LTR_DIRS 14191 14757 112 + . . scaffold806 GLEAN mRNA 14221 14901 0.934338 + . ID=CGI_10004919; scaffold806 WUBlastX LTR_DIRS 14221 14901 86 + . . scaffold806 GLEAN mRNA 15035 15451 0.934338 + . ID=CGI_10004919; scaffold806 WUBlastX LTR_DIRS 15035 15451 63 + . . scaffold806 GLEAN mRNA 53767 53802 0.99961 + . ID=CGI_10004921; scaffold806 TRF Tandem_Repeat 53767 53802 72 + . . scaffold806 GLEAN mRNA 53880 53913 0.99961 + . ID=CGI_10004921; scaffold806 TRF Tandem_Repeat 53880 53913 68 + . . scaffold806 GLEAN mRNA 55391 55456 0.99961 + . ID=CGI_10004921; scaffold806 TRF Tandem_Repeat 55391 55456 123 + . . scaffold806 GLEAN mRNA 74344 74398 0.999606 + . ID=CGI_10004923; scaffold806 TRF Tandem_Repeat 74344 74398 110 + . . scaffold806 GLEAN mRNA 78428 78494 0.999606 + . ID=CGI_10004923; scaffold806 TRF Tandem_Repeat 78428 78494 116 + . . scaffold806 GLEAN mRNA 80016 81064 0.999606 + . ID=CGI_10004923; scaffold806 TRF Tandem_Repeat 80016 81064 1035 + . . scaffold806 GLEAN mRNA 80022 81064 0.999606 + . ID=CGI_10004923; scaffold806 TRF Tandem_Repeat 80022 81064 850 + . . scaffold806 GLEAN mRNA 80022 81064 0.999606 + . ID=CGI_10004923; scaffold806 TRF Tandem_Repeat 80022 81064 1160 + . . scaffold806 GLEAN mRNA 80017 81064 0.999606 + . ID=CGI_10004923; scaffold806 TRF Tandem_Repeat 80017 81064 926 + . . scaffold806 GLEAN mRNA 82018 82115 0.999606 + . ID=CGI_10004923; scaffold806 TRF Tandem_Repeat 82018 82115 178 + . . scaffold806 GLEAN mRNA 84683 85718 0.999606 + . ID=CGI_10004923; scaffold806 TRF Tandem_Repeat 84683 85718 1365 + . . scaffold806 GLEAN mRNA 107637 107768 1 + . ID=CGI_10004925; scaffold806 TRF Tandem_Repeat 107637 107768 130 + . . scaffold806 GLEAN mRNA 109695 109952 1 + . ID=CGI_10004925; scaffold806 TRF Tandem_Repeat 109695 109952 457 + . . scaffold806 GLEAN mRNA 112351 112975 1 + . ID=CGI_10004925; scaffold806 TRF Tandem_Repeat 112351 112975 685 + . . scaffold597 GLEAN mRNA 32292 32320 0.999676 + . ID=CGI_10004927; scaffold597 TRF Tandem_Repeat 32292 32320 58 + . . scaffold597 GLEAN mRNA 33219 33508 0.999676 + . ID=CGI_10004927; scaffold597 TRF Tandem_Repeat 33219 33508 449 + . . scaffold597 GLEAN mRNA 33224 33508 0.999676 + . ID=CGI_10004927; scaffold597 TRF Tandem_Repeat 33224 33508 439 + . . scaffold597 GLEAN mRNA 35928 36797 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_I 35928 36797 89 - . . scaffold597 GLEAN mRNA 37616 38485 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_I 37616 38485 89 - . . scaffold597 GLEAN mRNA 37004 37168 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_CR1 37004 37168 31 - . . scaffold597 GLEAN mRNA 35106 35339 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_RTE-BovB 35106 35339 37 - . . scaffold597 GLEAN mRNA 35928 36509 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_L1-Tx1 35928 36509 119 - . . scaffold597 GLEAN mRNA 35928 36401 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_RTE-X 35928 36401 143 - . . scaffold597 GLEAN mRNA 35928 36239 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_RTE-RTE 35928 36239 163 - . . scaffold597 GLEAN mRNA 37616 37927 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_RTE-RTE 37616 37927 163 - . . scaffold597 GLEAN mRNA 35579 35911 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_CR1 35579 35911 109 - . . scaffold597 GLEAN mRNA 37267 37599 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_CR1 37267 37599 109 - . . scaffold597 GLEAN mRNA 37616 38089 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_RTE-X 37616 38089 143 - . . scaffold597 GLEAN mRNA 35513 35911 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_CR1 35513 35911 77 - . . scaffold597 GLEAN mRNA 37201 37599 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_CR1 37201 37599 77 - . . scaffold597 GLEAN mRNA 37616 38197 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_L1-Tx1 37616 38197 119 - . . scaffold597 GLEAN mRNA 35079 35504 0.999676 + . ID=CGI_10004927; scaffold597 WUBlastX LINE_RTE-X 35079 35504 20 - . . scaffold597 GLEAN mRNA 62122 62345 0.543434 + . ID=CGI_10004929; scaffold597 TRF Tandem_Repeat 62122 62345 340 + . . scaffold597 GLEAN mRNA 66638 66743 0.543434 + . ID=CGI_10004929; scaffold597 TRF Tandem_Repeat 66638 66743 114 + . . scaffold597 GLEAN mRNA 67101 67133 0.543434 + . ID=CGI_10004929; scaffold597 TRF Tandem_Repeat 67101 67133 66 + . . scaffold597 GLEAN mRNA 72908 72968 0.543434 + . ID=CGI_10004929; scaffold597 TRF Tandem_Repeat 72908 72968 122 + . . scaffold597 GLEAN mRNA 73659 73797 0.543434 + . ID=CGI_10004929; scaffold597 TRF Tandem_Repeat 73659 73797 253 + . . scaffold597 GLEAN mRNA 81083 81535 0.999999 - . ID=CGI_10004930; scaffold597 WUBlastX LINE_L1-Tx1 81083 81535 244 + . . scaffold597 GLEAN mRNA 80379 80453 0.999999 - . ID=CGI_10004930; scaffold597 WUBlastX LINE_L1 80379 80453 26 + . . scaffold597 GLEAN mRNA 87302 87343 0.999999 - . ID=CGI_10004930; scaffold597 TRF Tandem_Repeat 87302 87343 84 + . . scaffold597 GLEAN mRNA 81547 82131 0.999999 - . ID=CGI_10004930; scaffold597 WUBlastX LINE_L1-Tx1 81547 82131 117 + . . scaffold41316 GLEAN mRNA 2091 2418 0.998221 - . ID=CGI_10004931; scaffold41316 TRF Tandem_Repeat 2091 2418 474 + . . scaffold41316 GLEAN mRNA 23628 23747 0.889872 + . ID=CGI_10004932; scaffold41316 TRF Tandem_Repeat 23628 23747 222 + . . scaffold41316 GLEAN mRNA 44779 44861 0.814164 - . ID=CGI_10004933; scaffold41316 TRF Tandem_Repeat 44779 44861 166 + . . scaffold41316 GLEAN mRNA 47957 48022 0.814164 - . ID=CGI_10004933; scaffold41316 TRF Tandem_Repeat 47957 48022 123 + . . scaffold41316 GLEAN mRNA 55419 55470 1 + . ID=CGI_10004934; scaffold41316 TRF Tandem_Repeat 55419 55470 50 + . . scaffold858 GLEAN mRNA 15114 15359 0.93008 - . ID=CGI_10004935; scaffold858 WUBlastX LINE_CR1-L2 15114 15359 50 - . . scaffold858 GLEAN mRNA 15398 16354 0.93008 - . ID=CGI_10004935; scaffold858 WUBlastX LINE_L2 15398 16354 569 - . . scaffold858 GLEAN mRNA 15203 16306 0.93008 - . ID=CGI_10004935; scaffold858 WUBlastX LINE_L2 15203 16306 268 - . . scaffold858 GLEAN mRNA 16894 16944 0.93008 - . ID=CGI_10004935; scaffold858 WUBlastX LINE_Jockey 16894 16944 20 - . . scaffold858 GLEAN mRNA 16512 16625 0.93008 - . ID=CGI_10004935; scaffold858 WUBlastX LINE_L2 16512 16625 35 - . . scaffold858 GLEAN mRNA 17344 17397 0.93008 - . ID=CGI_10004935; scaffold858 WUBlastX LINE_L2 17344 17397 24 - . . scaffold858 GLEAN mRNA 15353 16606 0.93008 - . ID=CGI_10004935; scaffold858 WUBlastX LINE_L2 15353 16606 167 - . . scaffold858 GLEAN mRNA 94009 94038 0.680743 - . ID=CGI_10004937; scaffold858 TRF Tandem_Repeat 94009 94038 60 + . . scaffold1672 GLEAN mRNA 36927 36957 0.889783 - . ID=CGI_10004940; scaffold1672 TRF Tandem_Repeat 36927 36957 53 + . . scaffold1672 GLEAN mRNA 54259 54297 1 + . ID=CGI_10004941; scaffold1672 TRF Tandem_Repeat 54259 54297 78 + . . scaffold1672 GLEAN mRNA 64848 64921 0.999231 + . ID=CGI_10004942; scaffold1672 TRF Tandem_Repeat 64848 64921 148 + . . scaffold1672 GLEAN mRNA 60296 61171 0.999231 + . ID=CGI_10004942; scaffold1672 WUBlastX LTR_DIRS 60296 61171 550 + . . scaffold1672 GLEAN mRNA 57713 57772 0.999231 + . ID=CGI_10004942; scaffold1672 WUBlastX LTR_Gypsy 57713 57772 20 + . . scaffold1672 GLEAN mRNA 58431 60407 0.999231 + . ID=CGI_10004942; scaffold1672 WUBlastX LTR_DIRS 58431 60407 1331 + . . scaffold1672 GLEAN mRNA 57963 60122 0.999231 + . ID=CGI_10004942; scaffold1672 WUBlastX LTR_DIRS 57963 60122 382 + . . scaffold1672 GLEAN mRNA 67362 67430 0.999231 + . ID=CGI_10004942; scaffold1672 TRF Tandem_Repeat 67362 67430 129 + . . scaffold1672 GLEAN mRNA 71589 71906 0.999231 + . ID=CGI_10004942; scaffold1672 TRF Tandem_Repeat 71589 71906 591 + . . scaffold1672 GLEAN mRNA 71901 72163 0.999231 + . ID=CGI_10004942; scaffold1672 TRF Tandem_Repeat 71901 72163 438 + . . scaffold1672 GLEAN mRNA 79070 79114 0.999231 + . ID=CGI_10004942; scaffold1672 TRF Tandem_Repeat 79070 79114 90 + . . scaffold1672 GLEAN mRNA 77310 77585 0.999231 + . ID=CGI_10004942; scaffold1672 WUBlastX LTR_Gypsy 77310 77585 31 + . . scaffold1672 GLEAN mRNA 81219 81452 0.999231 + . ID=CGI_10004942; scaffold1672 WUBlastX LTR_Gypsy 81219 81452 54 + . . scaffold1672 GLEAN mRNA 79070 79114 1 - . ID=CGI_10004943; scaffold1672 TRF Tandem_Repeat 79070 79114 90 + . . scaffold1672 GLEAN mRNA 77310 77585 1 - . ID=CGI_10004943; scaffold1672 WUBlastX LTR_Gypsy 77310 77585 31 + . . scaffold232 GLEAN mRNA 9444 9492 0.999676 + . ID=CGI_10004958; scaffold232 TRF Tandem_Repeat 9444 9492 98 + . . scaffold232 GLEAN mRNA 56789 56831 1 - . ID=CGI_10004960; scaffold232 TRF Tandem_Repeat 56789 56831 86 + . . scaffold232 GLEAN mRNA 56952 56994 1 - . ID=CGI_10004960; scaffold232 TRF Tandem_Repeat 56952 56994 86 + . . scaffold1876 GLEAN mRNA 10494 10532 0.999999 + . ID=CGI_10004962; scaffold1876 TRF Tandem_Repeat 10494 10532 78 + . . scaffold1876 GLEAN mRNA 11995 13872 0.999999 + . ID=CGI_10004962; scaffold1876 TRF Tandem_Repeat 11995 13872 2645 + . . scaffold1876 GLEAN mRNA 23021 23050 0.999235 - . ID=CGI_10004963; scaffold1876 TRF Tandem_Repeat 23021 23050 51 + . . scaffold1876 GLEAN mRNA 34716 34810 1 - . ID=CGI_10004964; scaffold1876 TRF Tandem_Repeat 34716 34810 113 + . . scaffold1876 GLEAN mRNA 34516 34945 1 - . ID=CGI_10004964; scaffold1876 TRF Tandem_Repeat 34516 34945 434 + . . scaffold1876 GLEAN mRNA 34797 34863 1 - . ID=CGI_10004964; scaffold1876 TRF Tandem_Repeat 34797 34863 63 + . . scaffold1876 GLEAN mRNA 41525 41818 0.998915 + . ID=CGI_10004965; scaffold1876 TRF Tandem_Repeat 41525 41818 543 + . . scaffold1876 GLEAN mRNA 81457 81497 0.999531 + . ID=CGI_10004967; scaffold1876 TRF Tandem_Repeat 81457 81497 82 + . . scaffold41358 GLEAN mRNA 36080 36129 0.999676 + . ID=CGI_10004969; scaffold41358 TRF Tandem_Repeat 36080 36129 66 + . . scaffold41358 GLEAN mRNA 65580 65627 0.999351 + . ID=CGI_10004973; scaffold41358 TRF Tandem_Repeat 65580 65627 96 + . . scaffold41358 GLEAN mRNA 79183 79262 0.977174 - . ID=CGI_10004974; scaffold41358 TRF Tandem_Repeat 79183 79262 160 + . . scaffold41358 GLEAN mRNA 81292 81624 0.977174 - . ID=CGI_10004974; scaffold41358 TRF Tandem_Repeat 81292 81624 531 + . . scaffold41358 GLEAN mRNA 81343 81490 0.977174 - . ID=CGI_10004974; scaffold41358 TRF Tandem_Repeat 81343 81490 68 + . . scaffold41358 GLEAN mRNA 91950 92022 1 + . ID=CGI_10004975; scaffold41358 TRF Tandem_Repeat 91950 92022 146 + . . scaffold41358 GLEAN mRNA 110356 110662 0.650923 - . ID=CGI_10004976; scaffold41358 TRF Tandem_Repeat 110356 110662 200 + . . scaffold41358 GLEAN mRNA 110388 110715 0.650923 - . ID=CGI_10004976; scaffold41358 TRF Tandem_Repeat 110388 110715 426 + . . scaffold41358 GLEAN mRNA 110356 110705 0.650923 - . ID=CGI_10004976; scaffold41358 TRF Tandem_Repeat 110356 110705 556 + . . scaffold41358 GLEAN mRNA 110896 111117 0.650923 - . ID=CGI_10004976; scaffold41358 WUBlastX DNA_TcMar-Tc1 110896 111117 154 + . . scaffold41358 GLEAN mRNA 110732 110905 0.650923 - . ID=CGI_10004976; scaffold41358 WUBlastX DNA_TcMar-Tc1 110732 110905 31 + . . scaffold41358 GLEAN mRNA 112017 112046 0.650923 - . ID=CGI_10004976; scaffold41358 WUBlastX DNA_TcMar-Tc1 112017 112046 20 + . . scaffold41358 GLEAN mRNA 111122 111208 0.650923 - . ID=CGI_10004976; scaffold41358 WUBlastX DNA_TcMar-Tc1 111122 111208 36 + . . scaffold41358 GLEAN mRNA 111140 111226 0.650923 - . ID=CGI_10004976; scaffold41358 WUBlastX DNA_TcMar-Tc1 111140 111226 29 + . . scaffold41344 GLEAN mRNA 6009 6085 0.733461 + . ID=CGI_10004977; scaffold41344 WUBlastX LINE_L1 6009 6428 54 + . . scaffold41344 GLEAN mRNA 6527 6538 1 + . ID=CGI_10004978; scaffold41344 WUBlastX LINE_L1-Tx1 6425 6538 32 + . . scaffold41344 GLEAN mRNA 45235 45308 0.954333 - . ID=CGI_10004979; scaffold41344 TRF Tandem_Repeat 45235 45308 112 + . . scaffold41344 GLEAN mRNA 56781 56836 1 + . ID=CGI_10004980; scaffold41344 TRF Tandem_Repeat 56781 56836 112 + . . scaffold41344 GLEAN mRNA 56906 56934 1 + . ID=CGI_10004980; scaffold41344 TRF Tandem_Repeat 56906 56934 58 + . . scaffold41344 GLEAN mRNA 59666 59699 1 + . ID=CGI_10004980; scaffold41344 TRF Tandem_Repeat 59666 59699 50 + . . scaffold41344 GLEAN mRNA 73369 73482 1 + . ID=CGI_10004980; scaffold41344 WUBlastX LINE_RTE-X 73369 73629 52 + . . scaffold41344 GLEAN mRNA 103981 104341 0.729349 - . ID=CGI_10004982; scaffold41344 TRF Tandem_Repeat 103981 104341 596 + . . scaffold41344 GLEAN mRNA 112551 112598 0.999612 + . ID=CGI_10004984; scaffold41344 TRF Tandem_Repeat 112551 112598 78 + . . scaffold41344 GLEAN mRNA 113088 113531 0.999612 + . ID=CGI_10004984; scaffold41344 WUBlastX LINE_L2 113088 113531 219 - . . scaffold41344 GLEAN mRNA 113169 113597 0.999612 + . ID=CGI_10004984; scaffold41344 WUBlastX LINE_L2 113169 113597 83 - . . scaffold41344 GLEAN mRNA 114500 114604 0.999612 + . ID=CGI_10004984; scaffold41344 WUBlastX LINE_L2 114500 114604 22 - . . scaffold41344 GLEAN mRNA 113010 113501 0.999612 + . ID=CGI_10004984; scaffold41344 WUBlastX LINE_L2 113010 113501 111 - . . scaffold41344 GLEAN mRNA 112896 113477 0.999612 + . ID=CGI_10004984; scaffold41344 WUBlastX LINE_L2 112896 113477 92 - . . scaffold41344 GLEAN mRNA 113094 113459 0.999612 + . ID=CGI_10004984; scaffold41344 WUBlastX LINE_L2 113094 113459 246 - . . scaffold41344 GLEAN mRNA 112848 113084 0.999612 + . ID=CGI_10004984; scaffold41344 WUBlastX LINE_L2 112848 113084 56 - . . scaffold41318 GLEAN mRNA 63339 63395 0.999624 - . ID=CGI_10004985; scaffold41318 TRF Tandem_Repeat 63339 63395 114 + . . scaffold41318 GLEAN mRNA 69704 69892 0.999624 - . ID=CGI_10004985; scaffold41318 TRF Tandem_Repeat 69704 69892 200 + . . scaffold41318 GLEAN mRNA 69774 69891 0.999624 - . ID=CGI_10004985; scaffold41318 TRF Tandem_Repeat 69774 69891 130 + . . scaffold41318 GLEAN mRNA 71445 71592 0.999624 - . ID=CGI_10004985; scaffold41318 TRF Tandem_Repeat 71445 71592 143 + . . scaffold41318 GLEAN mRNA 74158 74188 0.999624 - . ID=CGI_10004985; scaffold41318 TRF Tandem_Repeat 74158 74188 53 + . . scaffold41312 GLEAN mRNA 9842 9940 1 + . ID=CGI_10004986; scaffold41312 TRF Tandem_Repeat 9842 9940 173 + . . scaffold41312 GLEAN mRNA 9940 10079 1 + . ID=CGI_10004986; scaffold41312 TRF Tandem_Repeat 9940 10079 59 + . . scaffold41312 GLEAN mRNA 10542 10659 1 + . ID=CGI_10004986; scaffold41312 TRF Tandem_Repeat 10542 10659 69 + . . scaffold41312 GLEAN mRNA 102794 102828 0.750094 + . ID=CGI_10004988; scaffold41312 TRF Tandem_Repeat 102794 102828 70 + . . scaffold41312 GLEAN mRNA 107530 107572 0.750094 + . ID=CGI_10004988; scaffold41312 TRF Tandem_Repeat 107530 107572 86 + . . scaffold41390 GLEAN mRNA 29990 30027 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 29990 30027 76 + . . scaffold41390 GLEAN mRNA 30806 31063 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 30806 31063 318 + . . scaffold41390 GLEAN mRNA 33820 35229 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 33820 35229 2350 + . . scaffold41390 GLEAN mRNA 36166 36321 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 36166 36321 167 + . . scaffold41390 GLEAN mRNA 36767 36881 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 36767 36881 95 + . . scaffold41390 GLEAN mRNA 36751 36954 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 36751 36954 345 + . . scaffold41390 GLEAN mRNA 38459 39900 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 38459 39900 2670 + . . scaffold41390 GLEAN mRNA 40724 40835 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 40724 40835 206 + . . scaffold41390 GLEAN mRNA 41311 42025 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 41311 42025 1098 + . . scaffold41390 GLEAN mRNA 41311 42025 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 41311 42025 1080 + . . scaffold41390 GLEAN mRNA 41311 41668 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 41311 41668 617 + . . scaffold41390 GLEAN mRNA 41668 42027 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 41668 42027 558 + . . scaffold41390 GLEAN mRNA 42514 42739 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 42514 42739 223 + . . scaffold41390 GLEAN mRNA 44218 44651 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 44218 44651 174 + . . scaffold41390 GLEAN mRNA 44511 44684 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 44511 44684 160 + . . scaffold41390 GLEAN mRNA 44637 45293 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 44637 45293 609 + . . scaffold41390 GLEAN mRNA 44984 45118 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 44984 45118 198 + . . scaffold41390 GLEAN mRNA 44985 45862 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 44985 45862 666 + . . scaffold41390 GLEAN mRNA 45272 45514 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 45272 45514 388 + . . scaffold41390 GLEAN mRNA 44918 45862 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 44918 45862 621 + . . scaffold41390 GLEAN mRNA 45624 45862 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 45624 45862 333 + . . scaffold41390 GLEAN mRNA 46145 46373 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 46145 46373 261 + . . scaffold41390 GLEAN mRNA 49590 50275 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 49590 50275 1103 + . . scaffold41390 GLEAN mRNA 48868 49306 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 48868 49306 583 + . . scaffold41390 GLEAN mRNA 61147 61284 0.672974 - . ID=CGI_10004990; scaffold41390 WUBlastX DNA_Kolobok-Hyd 61147 61356 26 - . . scaffold41390 GLEAN mRNA 107980 108022 0.999676 - . ID=CGI_10004992; scaffold41390 TRF Tandem_Repeat 107980 108022 86 + . . scaffold41356 GLEAN mRNA 9479 9523 0.990026 - . ID=CGI_10004993; scaffold41356 TRF Tandem_Repeat 9479 9523 90 + . . scaffold41356 GLEAN mRNA 12694 13281 0.990026 - . ID=CGI_10004993; scaffold41356 WUBlastX LTR_Ngaro 12694 13281 110 - . . scaffold41356 GLEAN mRNA 12470 12760 0.990026 - . ID=CGI_10004993; scaffold41356 WUBlastX LTR_Ngaro 12470 12760 110 - . . scaffold41356 GLEAN mRNA 12733 13194 0.990026 - . ID=CGI_10004993; scaffold41356 WUBlastX LTR_Ngaro 12733 13194 113 - . . scaffold41356 GLEAN mRNA 34300 34341 0.908715 - . ID=CGI_10004994; scaffold41356 TRF Tandem_Repeat 34300 34341 84 + . . scaffold41356 GLEAN mRNA 41778 41822 0.908715 - . ID=CGI_10004994; scaffold41356 TRF Tandem_Repeat 41778 41822 90 + . . scaffold41356 GLEAN mRNA 45552 45589 0.908715 - . ID=CGI_10004994; scaffold41356 TRF Tandem_Repeat 45552 45589 76 + . . scaffold41356 GLEAN mRNA 52676 52709 0.908715 - . ID=CGI_10004994; scaffold41356 TRF Tandem_Repeat 52676 52709 52 + . . scaffold41356 GLEAN mRNA 52399 52611 0.908715 - . ID=CGI_10004994; scaffold41356 WUBlastX LINE_RTE-X 52399 52611 46 - . . scaffold41356 GLEAN mRNA 52369 52623 0.908715 - . ID=CGI_10004994; scaffold41356 WUBlastX LINE_RTE-X 52369 52623 41 - . . scaffold41356 GLEAN mRNA 52676 52709 0.811456 + . ID=CGI_10004995; scaffold41356 TRF Tandem_Repeat 52676 52709 52 + . . scaffold41356 GLEAN mRNA 59514 59541 0.811456 + . ID=CGI_10004995; scaffold41356 TRF Tandem_Repeat 59514 59541 56 + . . scaffold41356 GLEAN mRNA 58018 58242 0.811456 + . ID=CGI_10004995; scaffold41356 WUBlastX LINE_RTE-X 58018 58242 32 - . . scaffold41356 GLEAN mRNA 57789 57959 0.811456 + . ID=CGI_10004995; scaffold41356 WUBlastX LINE_RTE-X 57789 57959 55 - . . scaffold41356 GLEAN mRNA 52399 52611 0.811456 + . ID=CGI_10004995; scaffold41356 WUBlastX LINE_RTE-X 52399 52611 46 - . . scaffold41356 GLEAN mRNA 57804 58178 0.811456 + . ID=CGI_10004995; scaffold41356 WUBlastX LINE_RTE-X 57804 58178 44 - . . scaffold41356 GLEAN mRNA 52369 52623 0.811456 + . ID=CGI_10004995; scaffold41356 WUBlastX LINE_RTE-X 52369 52623 41 - . . scaffold41356 GLEAN mRNA 94500 94709 0.997112 + . ID=CGI_10004996; scaffold41356 TRF Tandem_Repeat 94500 94709 190 + . . scaffold41356 GLEAN mRNA 94450 94707 0.997112 + . ID=CGI_10004996; scaffold41356 TRF Tandem_Repeat 94450 94707 194 + . . scaffold41356 GLEAN mRNA 100050 100089 0.997112 + . ID=CGI_10004996; scaffold41356 TRF Tandem_Repeat 100050 100089 80 + . . scaffold41356 GLEAN mRNA 109657 109813 0.997195 + . ID=CGI_10004997; scaffold41356 TRF Tandem_Repeat 109657 109813 170 + . . scaffold41356 GLEAN mRNA 111719 111912 0.997195 + . ID=CGI_10004997; scaffold41356 TRF Tandem_Repeat 111719 111912 205 + . . scaffold41346 GLEAN mRNA 17676 18080 0.862252 + . ID=CGI_10004998; scaffold41346 WUBlastX DNA_TcMar-Marin 17676 18080 234 - . . scaffold41346 GLEAN mRNA 18266 18883 0.862252 + . ID=CGI_10004998; scaffold41346 WUBlastX DNA_TcMar-Marin 18266 18883 63 - . . scaffold41346 GLEAN mRNA 18260 18784 0.862252 + . ID=CGI_10004998; scaffold41346 WUBlastX DNA_TcMar-Marin 18260 18784 320 - . . scaffold41346 GLEAN mRNA 17688 18167 0.862252 + . ID=CGI_10004998; scaffold41346 WUBlastX DNA_TcMar-Marin 17688 18167 133 - . . scaffold41346 GLEAN mRNA 36887 36922 0.990251 - . ID=CGI_10004999; scaffold41346 TRF Tandem_Repeat 36887 36922 72 + . . scaffold41346 GLEAN mRNA 33674 33805 0.990251 - . ID=CGI_10004999; scaffold41346 WUBlastX RC_Helitron 33674 33805 51 - . . scaffold41346 GLEAN mRNA 33266 33763 0.990251 - . ID=CGI_10004999; scaffold41346 WUBlastX RC_Helitron 33266 33763 75 - . . scaffold41346 GLEAN mRNA 33362 33574 0.990251 - . ID=CGI_10004999; scaffold41346 WUBlastX DNA_Helitron 33362 33574 90 - . . scaffold41346 GLEAN mRNA 33407 33772 0.990251 - . ID=CGI_10004999; scaffold41346 WUBlastX RC_Helitron 33407 33772 89 - . . scaffold41346 GLEAN mRNA 112643 112678 1 + . ID=CGI_10005002; scaffold41346 TRF Tandem_Repeat 112643 112678 72 + . . scaffold270 GLEAN mRNA 3174 3560 0.999949 + . ID=CGI_10005003; scaffold270 TRF Tandem_Repeat 3174 3560 546 + . . scaffold41372 GLEAN mRNA 70147 70245 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 70147 70245 36 - . . scaffold41372 GLEAN mRNA 70626 71621 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 70626 71621 350 - . . scaffold41372 GLEAN mRNA 72101 72505 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 72101 72505 296 - . . scaffold41372 GLEAN mRNA 72508 72807 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 72508 72807 158 - . . scaffold41372 GLEAN mRNA 73073 73813 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 73073 73813 279 - . . scaffold41372 GLEAN mRNA 71936 72502 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1 71936 72502 97 - . . scaffold41372 GLEAN mRNA 70710 71816 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 70710 71816 100 - . . scaffold41372 GLEAN mRNA 73758 74123 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 73758 74123 135 - . . scaffold41372 GLEAN mRNA 70120 70290 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 70120 70290 28 - . . scaffold41372 GLEAN mRNA 72502 73113 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1 72502 73113 66 - . . scaffold41372 GLEAN mRNA 69875 70150 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 69875 70150 20 - . . scaffold41372 GLEAN mRNA 69953 70150 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 69953 70150 72 - . . scaffold41388 GLEAN mRNA 59788 59820 0.999676 - . ID=CGI_10005014; scaffold41388 TRF Tandem_Repeat 59788 59820 50 + . . scaffold41388 GLEAN mRNA 55975 56430 0.999676 - . ID=CGI_10005014; scaffold41388 WUBlastX LINE_L2 55975 56430 166 - . . scaffold41388 GLEAN mRNA 112487 112620 0.999212 - . ID=CGI_10005016; scaffold41388 TRF Tandem_Repeat 112487 112620 119 + . . scaffold41388 GLEAN mRNA 113616 113732 0.999212 - . ID=CGI_10005016; scaffold41388 TRF Tandem_Repeat 113616 113732 118 + . . scaffold1770 GLEAN mRNA 33361 33397 0.727309 + . ID=CGI_10005018; scaffold1770 TRF Tandem_Repeat 33361 33397 74 + . . scaffold1770 GLEAN mRNA 76497 76538 0.999676 - . ID=CGI_10005021; scaffold1770 TRF Tandem_Repeat 76497 76538 84 + . . scaffold1770 GLEAN mRNA 76574 76623 0.999676 - . ID=CGI_10005021; scaffold1770 TRF Tandem_Repeat 76574 76623 100 + . . scaffold1770 GLEAN mRNA 87784 87900 1 - . ID=CGI_10005023; scaffold1770 TRF Tandem_Repeat 87784 87900 126 + . . scaffold1770 GLEAN mRNA 87784 87900 0.999351 + . ID=CGI_10005024; scaffold1770 TRF Tandem_Repeat 87784 87900 126 + . . scaffold1770 GLEAN mRNA 91767 91844 0.999351 + . ID=CGI_10005024; scaffold1770 TRF Tandem_Repeat 91767 91844 147 + . . scaffold41400 GLEAN mRNA 66188 66228 0.999676 - . ID=CGI_10005033; scaffold41400 TRF Tandem_Repeat 66188 66228 57 + . . scaffold41400 GLEAN mRNA 77114 78123 0.489818 + . ID=CGI_10005034; scaffold41400 TRF Tandem_Repeat 77114 78123 1201 + . . scaffold41400 GLEAN mRNA 78853 78916 0.489818 + . ID=CGI_10005034; scaffold41400 TRF Tandem_Repeat 78853 78916 55 + . . scaffold41400 GLEAN mRNA 79094 79165 0.489818 + . ID=CGI_10005034; scaffold41400 TRF Tandem_Repeat 79094 79165 53 + . . scaffold41400 GLEAN mRNA 79179 79264 0.489818 + . ID=CGI_10005034; scaffold41400 TRF Tandem_Repeat 79179 79264 54 + . . scaffold41400 GLEAN mRNA 79883 79946 0.489818 + . ID=CGI_10005034; scaffold41400 TRF Tandem_Repeat 79883 79946 119 + . . scaffold41400 GLEAN mRNA 72628 73002 0.489818 + . ID=CGI_10005034; scaffold41400 WUBlastX DNA_IS4EU 72628 73002 43 - . . scaffold41400 GLEAN mRNA 90839 90875 0.99961 + . ID=CGI_10005036; scaffold41400 TRF Tandem_Repeat 90839 90875 74 + . . scaffold41400 GLEAN mRNA 91769 91828 0.99961 + . ID=CGI_10005036; scaffold41400 TRF Tandem_Repeat 91769 91828 120 + . . scaffold41400 GLEAN mRNA 108708 108768 0.999982 - . ID=CGI_10005037; scaffold41400 TRF Tandem_Repeat 108708 108768 66 + . . scaffold41400 GLEAN mRNA 114637 114692 0.999982 - . ID=CGI_10005037; scaffold41400 TRF Tandem_Repeat 114637 114692 58 + . . scaffold41400 GLEAN mRNA 114640 114692 0.999982 - . ID=CGI_10005037; scaffold41400 TRF Tandem_Repeat 114640 114692 88 + . . scaffold41400 GLEAN mRNA 116075 116506 1 + . ID=CGI_10005038; scaffold41400 WUBlastX DNA_IS4EU 115949 116506 234 + . . scaffold41380 GLEAN mRNA 65456 65510 0.636303 + . ID=CGI_10005041; scaffold41380 TRF Tandem_Repeat 65456 65510 110 + . . scaffold41380 GLEAN mRNA 65958 66206 0.636303 + . ID=CGI_10005041; scaffold41380 TRF Tandem_Repeat 65958 66206 250 + . . scaffold41380 GLEAN mRNA 67190 67609 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 67190 67609 32 - . . scaffold41380 GLEAN mRNA 66648 66800 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 66648 66800 39 - . . scaffold41380 GLEAN mRNA 66793 66834 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 66793 66834 20 - . . scaffold41380 GLEAN mRNA 66840 67109 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 66840 67109 65 - . . scaffold41380 GLEAN mRNA 67361 67609 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 67361 67609 93 - . . scaffold41380 GLEAN mRNA 67289 67477 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 67289 67477 66 - . . scaffold41380 GLEAN mRNA 66654 66746 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 66654 66746 41 - . . scaffold41380 GLEAN mRNA 68021 68089 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 68021 68089 31 - . . scaffold41380 GLEAN mRNA 66992 67252 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 66992 67252 29 - . . scaffold41380 GLEAN mRNA 67373 67651 0.636303 + . ID=CGI_10005041; scaffold41380 WUBlastX LINE_RTE-BovB 67373 67651 33 - . . scaffold41380 GLEAN mRNA 82656 83019 0.937507 - . ID=CGI_10005042; scaffold41380 TRF Tandem_Repeat 82656 83019 532 + . . scaffold41380 GLEAN mRNA 82984 83225 0.937507 - . ID=CGI_10005042; scaffold41380 TRF Tandem_Repeat 82984 83225 157 + . . scaffold41380 GLEAN mRNA 89118 89260 0.937507 - . ID=CGI_10005042; scaffold41380 TRF Tandem_Repeat 89118 89260 254 + . . scaffold41380 GLEAN mRNA 95036 95812 0.937507 - . ID=CGI_10005042; scaffold41380 TRF Tandem_Repeat 95036 95812 1108 + . . scaffold41380 GLEAN mRNA 95843 95874 0.937507 - . ID=CGI_10005042; scaffold41380 TRF Tandem_Repeat 95843 95874 55 + . . scaffold41380 GLEAN mRNA 101148 101750 0.937507 - . ID=CGI_10005042; scaffold41380 TRF Tandem_Repeat 101148 101750 546 + . . scaffold1343 GLEAN mRNA 8242 8299 1 + . ID=CGI_10005044; scaffold1343 TRF Tandem_Repeat 8242 8299 116 + . . scaffold1343 GLEAN mRNA 31507 31542 0.543666 + . ID=CGI_10005045; scaffold1343 TRF Tandem_Repeat 31507 31542 72 + . . scaffold1343 GLEAN mRNA 50479 50531 0.324842 + . ID=CGI_10005047; scaffold1343 TRF Tandem_Repeat 50479 50531 106 + . . scaffold1343 GLEAN mRNA 52238 52311 0.324842 + . ID=CGI_10005047; scaffold1343 TRF Tandem_Repeat 52238 52311 112 + . . scaffold1343 GLEAN mRNA 56588 56655 0.324842 + . ID=CGI_10005047; scaffold1343 TRF Tandem_Repeat 56588 56655 136 + . . scaffold1343 GLEAN mRNA 56794 56839 0.324842 + . ID=CGI_10005047; scaffold1343 TRF Tandem_Repeat 56794 56839 83 + . . scaffold1343 GLEAN mRNA 95103 95269 0.999675 + . ID=CGI_10005048; scaffold1343 TRF Tandem_Repeat 95103 95269 274 + . . scaffold1343 GLEAN mRNA 96001 96107 0.999675 + . ID=CGI_10005048; scaffold1343 TRF Tandem_Repeat 96001 96107 187 + . . scaffold1343 GLEAN mRNA 101156 101236 0.999675 + . ID=CGI_10005048; scaffold1343 TRF Tandem_Repeat 101156 101236 135 + . . scaffold1343 GLEAN mRNA 102312 102464 0.999675 + . ID=CGI_10005048; scaffold1343 TRF Tandem_Repeat 102312 102464 148 + . . scaffold1343 GLEAN mRNA 102988 103942 0.999675 + . ID=CGI_10005048; scaffold1343 TRF Tandem_Repeat 102988 103942 1213 + . . scaffold1343 GLEAN mRNA 102988 103942 0.999675 + . ID=CGI_10005048; scaffold1343 TRF Tandem_Repeat 102988 103942 1359 + . . scaffold1343 GLEAN mRNA 102988 103942 0.999675 + . ID=CGI_10005048; scaffold1343 TRF Tandem_Repeat 102988 103942 1386 + . . scaffold1343 GLEAN mRNA 109666 109703 0.999675 + . ID=CGI_10005048; scaffold1343 TRF Tandem_Repeat 109666 109703 67 + . . scaffold1343 GLEAN mRNA 99765 100601 0.999675 + . ID=CGI_10005048; scaffold1343 WUBlastX DNA_Maverick 99765 100601 305 + . . scaffold1343 GLEAN mRNA 100053 100784 0.999675 + . ID=CGI_10005048; scaffold1343 WUBlastX DNA_Maverick 100053 100784 194 + . . scaffold1343 GLEAN mRNA 99903 100589 0.999675 + . ID=CGI_10005048; scaffold1343 WUBlastX DNA_Maverick 99903 100589 351 + . . scaffold1343 GLEAN mRNA 99084 100607 0.999675 + . ID=CGI_10005048; scaffold1343 WUBlastX DNA_Maverick 99084 100607 238 + . . scaffold1343 GLEAN mRNA 100638 100958 0.999675 + . ID=CGI_10005048; scaffold1343 WUBlastX DNA_Maverick 100638 100958 99 + . . scaffold1343 GLEAN mRNA 98238 99761 0.999675 + . ID=CGI_10005048; scaffold1343 WUBlastX DNA_Maverick 98238 99761 140 + . . scaffold41448 GLEAN mRNA 4371 5421 1 + . ID=CGI_10005058; scaffold41448 TRF Tandem_Repeat 4371 5421 863 + . . scaffold41448 GLEAN mRNA 4387 5421 1 + . ID=CGI_10005058; scaffold41448 TRF Tandem_Repeat 4387 5421 1119 + . . scaffold41448 GLEAN mRNA 4387 5421 1 + . ID=CGI_10005058; scaffold41448 TRF Tandem_Repeat 4387 5421 1140 + . . scaffold41448 GLEAN mRNA 26583 27035 0.999991 + . ID=CGI_10005061; scaffold41448 WUBlastX LINE_RTE-X 26583 27035 97 + . . scaffold41448 GLEAN mRNA 36635 36667 0.621692 - . ID=CGI_10005062; scaffold41448 TRF Tandem_Repeat 36635 36667 66 + . . scaffold41448 GLEAN mRNA 37054 37285 0.621692 - . ID=CGI_10005062; scaffold41448 TRF Tandem_Repeat 37054 37285 93 + . . scaffold41448 GLEAN mRNA 37605 38126 0.621692 - . ID=CGI_10005062; scaffold41448 TRF Tandem_Repeat 37605 38126 981 + . . scaffold41448 GLEAN mRNA 43249 43285 0.621692 - . ID=CGI_10005062; scaffold41448 TRF Tandem_Repeat 43249 43285 74 + . . scaffold41448 GLEAN mRNA 95247 96106 0.531612 + . ID=CGI_10005063; scaffold41448 TRF Tandem_Repeat 95247 96106 1357 + . . scaffold1686 GLEAN mRNA 10846 10983 0.992485 - . ID=CGI_10005072; scaffold1686 WUBlastX LINE_Jockey 10846 10983 31 + . . scaffold1686 GLEAN mRNA 13236 13442 0.862137 - . ID=CGI_10005073; scaffold1686 WUBlastX DNA_Sola 13236 13463 41 - . . scaffold1686 GLEAN mRNA 59363 59689 0.792752 - . ID=CGI_10005075; scaffold1686 WUBlastX LINE_L1-Tx1 59363 59689 20 - . . scaffold1686 GLEAN mRNA 59032 59349 0.792752 - . ID=CGI_10005075; scaffold1686 WUBlastX LINE_L2 59032 59349 57 - . . scaffold1686 GLEAN mRNA 58930 59373 0.792752 - . ID=CGI_10005075; scaffold1686 WUBlastX LINE_L1 58930 59373 22 - . . scaffold1686 GLEAN mRNA 115824 115889 1 - . ID=CGI_10005077; scaffold1686 TRF Tandem_Repeat 115824 115889 66 + . . scaffold1686 GLEAN mRNA 115837 115882 1 - . ID=CGI_10005077; scaffold1686 TRF Tandem_Repeat 115837 115882 60 + . . scaffold1686 GLEAN mRNA 116012 116052 1 - . ID=CGI_10005077; scaffold1686 TRF Tandem_Repeat 116012 116052 57 + . . scaffold41452 GLEAN mRNA 40699 40754 0.997104 + . ID=CGI_10005079; scaffold41452 TRF Tandem_Repeat 40699 40754 67 + . . scaffold41452 GLEAN mRNA 42875 42961 0.997104 + . ID=CGI_10005079; scaffold41452 TRF Tandem_Repeat 42875 42961 68 + . . scaffold41452 GLEAN mRNA 63164 63433 0.524499 + . ID=CGI_10005081; scaffold41452 WUBlastX LINE_L2 63164 63433 166 + . . scaffold41452 GLEAN mRNA 63140 63463 0.524499 + . ID=CGI_10005081; scaffold41452 WUBlastX LINE_L2 63140 63463 140 + . . scaffold41452 GLEAN mRNA 62547 63113 0.524499 + . ID=CGI_10005081; scaffold41452 WUBlastX LINE_L2 62547 63113 69 + . . scaffold41452 GLEAN mRNA 62730 63119 0.524499 + . ID=CGI_10005081; scaffold41452 WUBlastX LINE_L2 62730 63119 191 + . . scaffold41452 GLEAN mRNA 62494 62748 0.524499 + . ID=CGI_10005081; scaffold41452 WUBlastX LINE_L2 62494 62748 35 + . . scaffold41452 GLEAN mRNA 62790 63128 0.524499 + . ID=CGI_10005081; scaffold41452 WUBlastX LINE_L2 62790 63128 215 + . . scaffold41452 GLEAN mRNA 63164 63532 0.524499 + . ID=CGI_10005081; scaffold41452 WUBlastX LINE_L2 63164 63532 41 + . . scaffold1467 GLEAN mRNA 10390 10423 0.999624 - . ID=CGI_10005083; scaffold1467 TRF Tandem_Repeat 10390 10423 50 + . . scaffold1467 GLEAN mRNA 10393 10436 0.999624 - . ID=CGI_10005083; scaffold1467 TRF Tandem_Repeat 10393 10436 70 + . . scaffold1467 GLEAN mRNA 15513 15546 0.999624 - . ID=CGI_10005083; scaffold1467 TRF Tandem_Repeat 15513 15546 52 + . . scaffold1467 GLEAN mRNA 81044 81070 0.835967 - . ID=CGI_10005087; scaffold1467 TRF Tandem_Repeat 81044 81070 54 + . . scaffold1467 GLEAN mRNA 113436 113467 0.74778 - . ID=CGI_10005089; scaffold1467 TRF Tandem_Repeat 113436 113467 64 + . . scaffold1467 GLEAN mRNA 113971 114004 0.74778 - . ID=CGI_10005089; scaffold1467 TRF Tandem_Repeat 113971 114004 59 + . . scaffold1467 GLEAN mRNA 114754 115554 0.74778 - . ID=CGI_10005089; scaffold1467 TRF Tandem_Repeat 114754 115554 1284 + . . scaffold41436 GLEAN mRNA 6286 6329 0.999949 - . ID=CGI_10005094; scaffold41436 TRF Tandem_Repeat 6286 6329 88 + . . scaffold41436 GLEAN mRNA 18804 18849 0.904962 + . ID=CGI_10005095; scaffold41436 TRF Tandem_Repeat 18804 18849 92 + . . scaffold41436 GLEAN mRNA 23406 23539 0.581897 - . ID=CGI_10005096; scaffold41436 TRF Tandem_Repeat 23406 23539 213 + . . scaffold41436 GLEAN mRNA 39239 39298 0.836226 - . ID=CGI_10005097; scaffold41436 TRF Tandem_Repeat 39239 39298 120 + . . scaffold41436 GLEAN mRNA 46125 46155 0.999676 - . ID=CGI_10005098; scaffold41436 TRF Tandem_Repeat 46125 46155 62 + . . scaffold41436 GLEAN mRNA 47190 47239 0.999676 - . ID=CGI_10005098; scaffold41436 TRF Tandem_Repeat 47190 47239 100 + . . scaffold41436 GLEAN mRNA 50017 50058 0.999676 - . ID=CGI_10005098; scaffold41436 TRF Tandem_Repeat 50017 50058 66 + . . scaffold41436 GLEAN mRNA 50071 50095 0.999676 - . ID=CGI_10005098; scaffold41436 TRF Tandem_Repeat 50071 50095 50 + . . scaffold1851 GLEAN mRNA 101673 101872 0.387171 - . ID=CGI_10005104; scaffold1851 TRF Tandem_Repeat 101673 101872 319 + . . scaffold1851 GLEAN mRNA 104012 104611 0.387171 - . ID=CGI_10005104; scaffold1851 WUBlastX LTR_Gypsy 104012 104611 188 + . . scaffold1851 GLEAN mRNA 104174 104689 0.387171 - . ID=CGI_10005104; scaffold1851 WUBlastX LTR_Gypsy 104174 104689 80 + . . scaffold1851 GLEAN mRNA 102905 104500 0.387171 - . ID=CGI_10005104; scaffold1851 WUBlastX LTR_Gypsy 102905 104500 910 + . . scaffold1181 GLEAN mRNA 48419 48447 0.702384 - . ID=CGI_10005106; scaffold1181 TRF Tandem_Repeat 48419 48447 58 + . . scaffold1181 GLEAN mRNA 75962 76052 0.378894 + . ID=CGI_10005107; scaffold1181 TRF Tandem_Repeat 75962 76052 164 + . . scaffold1181 GLEAN mRNA 82083 82140 0.378894 + . ID=CGI_10005107; scaffold1181 TRF Tandem_Repeat 82083 82140 116 + . . scaffold1181 GLEAN mRNA 82440 82477 0.378894 + . ID=CGI_10005107; scaffold1181 TRF Tandem_Repeat 82440 82477 67 + . . scaffold1181 GLEAN mRNA 97232 97272 0.88147 + . ID=CGI_10005108; scaffold1181 TRF Tandem_Repeat 97232 97272 57 + . . scaffold1757 GLEAN mRNA 14608 14948 0.995772 - . ID=CGI_10005111; scaffold1757 TRF Tandem_Repeat 14608 14948 610 + . . scaffold1757 GLEAN mRNA 42988 43464 0.907643 - . ID=CGI_10005112; scaffold1757 WUBlastX DNA_Academ 42988 43506 292 - . . scaffold1757 GLEAN mRNA 43478 43816 0.579796 - . ID=CGI_10005113; scaffold1757 WUBlastX DNA_Academ 43478 43816 47 - . . scaffold1757 GLEAN mRNA 43493 43762 0.579796 - . ID=CGI_10005113; scaffold1757 WUBlastX DNA_Academ 43493 43762 58 - . . scaffold1757 GLEAN mRNA 43472 43506 0.579796 - . ID=CGI_10005113; scaffold1757 WUBlastX DNA_Academ 42988 43506 292 - . . scaffold1757 GLEAN mRNA 77281 77310 0.612442 - . ID=CGI_10005114; scaffold1757 TRF Tandem_Repeat 77281 77310 51 + . . scaffold1757 GLEAN mRNA 77312 77376 0.612442 - . ID=CGI_10005114; scaffold1757 TRF Tandem_Repeat 77312 77376 85 + . . scaffold41480 GLEAN mRNA 9951 10011 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 9951 10011 113 + . . scaffold41480 GLEAN mRNA 10086 10130 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 10086 10130 90 + . . scaffold41480 GLEAN mRNA 10195 10240 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 10195 10240 74 + . . scaffold41480 GLEAN mRNA 10305 10344 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 10305 10344 80 + . . scaffold41480 GLEAN mRNA 10852 10926 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 10852 10926 150 + . . scaffold41480 GLEAN mRNA 11126 11247 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 11126 11247 169 + . . scaffold41480 GLEAN mRNA 12002 12480 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 12002 12480 742 + . . scaffold41480 GLEAN mRNA 13527 13796 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 13527 13796 452 + . . scaffold41480 GLEAN mRNA 15308 15422 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 15308 15422 194 + . . scaffold41480 GLEAN mRNA 16464 16722 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 16464 16722 157 + . . scaffold41480 GLEAN mRNA 16608 16666 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 16608 16666 52 + . . scaffold41480 GLEAN mRNA 17419 17599 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 17419 17599 127 + . . scaffold41480 GLEAN mRNA 18067 18730 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 18067 18730 1082 + . . scaffold41480 GLEAN mRNA 19903 19953 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 19903 19953 66 + . . scaffold41480 GLEAN mRNA 20835 20910 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 20835 20910 116 + . . scaffold41480 GLEAN mRNA 23637 23671 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 23637 23671 52 + . . scaffold41480 GLEAN mRNA 23708 23787 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 23708 23787 74 + . . scaffold41480 GLEAN mRNA 23713 23791 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 23713 23791 67 + . . scaffold41480 GLEAN mRNA 23708 23791 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 23708 23791 60 + . . scaffold41480 GLEAN mRNA 24123 24580 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 24123 24580 637 + . . scaffold41480 GLEAN mRNA 23998 24516 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 23998 24516 399 + . . scaffold41480 GLEAN mRNA 24685 25173 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 24685 25173 906 + . . scaffold41480 GLEAN mRNA 25245 26457 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 25245 26457 1190 + . . scaffold41480 GLEAN mRNA 28771 28836 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 28771 28836 96 + . . scaffold41480 GLEAN mRNA 29831 30015 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 29831 30015 244 + . . scaffold41480 GLEAN mRNA 31417 31955 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 31417 31955 734 + . . scaffold41480 GLEAN mRNA 34264 34324 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 34264 34324 81 + . . scaffold41480 GLEAN mRNA 34372 34403 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 34372 34403 64 + . . scaffold41480 GLEAN mRNA 34475 34541 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 34475 34541 134 + . . scaffold41480 GLEAN mRNA 50198 50338 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 50198 50338 273 + . . scaffold41480 GLEAN mRNA 50332 50474 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 50332 50474 243 + . . scaffold41480 GLEAN mRNA 53404 53509 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 53404 53509 106 + . . scaffold41480 GLEAN mRNA 62132 62197 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 62132 62197 123 + . . scaffold41480 GLEAN mRNA 62228 63107 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 62228 63107 1670 + . . scaffold41480 GLEAN mRNA 64449 64583 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 64449 64583 155 + . . scaffold41480 GLEAN mRNA 65486 65510 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 65486 65510 50 + . . scaffold41480 GLEAN mRNA 65853 65906 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 65853 65906 108 + . . scaffold41480 GLEAN mRNA 65947 65986 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 65947 65986 80 + . . scaffold41480 GLEAN mRNA 68771 68807 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 68771 68807 74 + . . scaffold41480 GLEAN mRNA 69384 69525 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 69384 69525 117 + . . scaffold41480 GLEAN mRNA 70298 70345 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 70298 70345 55 + . . scaffold41480 GLEAN mRNA 70473 70601 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 70473 70601 77 + . . scaffold41480 GLEAN mRNA 70493 70601 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 70493 70601 75 + . . scaffold41480 GLEAN mRNA 70505 70614 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 70505 70614 67 + . . scaffold41480 GLEAN mRNA 72787 72900 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 72787 72900 147 + . . scaffold41480 GLEAN mRNA 72789 72937 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 72789 72937 121 + . . scaffold41480 GLEAN mRNA 73033 73058 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 73033 73058 52 + . . scaffold41480 GLEAN mRNA 86316 86726 0.992486 + . ID=CGI_10005127; scaffold41480 TRF Tandem_Repeat 86316 86726 653 + . . scaffold41480 GLEAN mRNA 89755 89822 0.992486 + . ID=CGI_10005127; scaffold41480 TRF Tandem_Repeat 89755 89822 66 + . . scaffold41480 GLEAN mRNA 90848 91014 0.992486 + . ID=CGI_10005127; scaffold41480 TRF Tandem_Repeat 90848 91014 149 + . . scaffold41480 GLEAN mRNA 90829 91080 0.992486 + . ID=CGI_10005127; scaffold41480 TRF Tandem_Repeat 90829 91080 262 + . . scaffold41480 GLEAN mRNA 105962 108380 0.999183 + . ID=CGI_10005128; scaffold41480 TRF Tandem_Repeat 105962 108481 1902 + . . scaffold41466 GLEAN mRNA 31439 31543 0.891512 + . ID=CGI_10005137; scaffold41466 WUBlastX DNA_PiggyBac 31439 31543 21 - . . scaffold41466 GLEAN mRNA 31611 31703 0.891512 + . ID=CGI_10005137; scaffold41466 WUBlastX DNA_PiggyBac 31611 31703 47 - . . scaffold41472 GLEAN mRNA 808 890 0.552445 + . ID=CGI_10005138; scaffold41472 TRF Tandem_Repeat 808 890 67 + . . scaffold41472 GLEAN mRNA 15509 15610 0.999674 - . ID=CGI_10005140; scaffold41472 TRF Tandem_Repeat 15509 15610 75 + . . scaffold41472 GLEAN mRNA 15525 15618 0.999674 - . ID=CGI_10005140; scaffold41472 TRF Tandem_Repeat 15525 15618 127 + . . scaffold41472 GLEAN mRNA 16091 16117 0.999674 - . ID=CGI_10005140; scaffold41472 TRF Tandem_Repeat 16091 16117 54 + . . scaffold41472 GLEAN mRNA 15041 15217 0.999674 - . ID=CGI_10005140; scaffold41472 WUBlastX DNA_Harbinger 15041 15217 54 + . . scaffold41472 GLEAN mRNA 14493 14918 0.999674 - . ID=CGI_10005140; scaffold41472 WUBlastX DNA_Harbinger 14493 14918 24 + . . scaffold41472 GLEAN mRNA 18367 18873 0.999674 - . ID=CGI_10005140; scaffold41472 WUBlastX DNA_Harbinger 18367 18873 107 + . . scaffold41472 GLEAN mRNA 18334 18795 0.999674 - . ID=CGI_10005140; scaffold41472 WUBlastX DNA_Harbinger 18334 18795 204 + . . scaffold41472 GLEAN mRNA 43237 43347 0.421568 - . ID=CGI_10005142; scaffold41472 TRF Tandem_Repeat 43237 43347 159 + . . scaffold41472 GLEAN mRNA 44015 44949 0.421568 - . ID=CGI_10005142; scaffold41472 TRF Tandem_Repeat 44015 44949 1564 + . . scaffold41472 GLEAN mRNA 45944 46892 0.421568 - . ID=CGI_10005142; scaffold41472 TRF Tandem_Repeat 45944 46892 1275 + . . scaffold41472 GLEAN mRNA 46900 46960 0.421568 - . ID=CGI_10005142; scaffold41472 TRF Tandem_Repeat 46900 46960 86 + . . scaffold41472 GLEAN mRNA 46897 46960 0.421568 - . ID=CGI_10005142; scaffold41472 TRF Tandem_Repeat 46897 46960 92 + . . scaffold41472 GLEAN mRNA 59819 59863 0.421568 - . ID=CGI_10005142; scaffold41472 TRF Tandem_Repeat 59819 59863 65 + . . scaffold41472 GLEAN mRNA 59819 59863 0.988455 + . ID=CGI_10005143; scaffold41472 TRF Tandem_Repeat 59819 59863 65 + . . scaffold41472 GLEAN mRNA 71029 71158 0.852158 + . ID=CGI_10005144; scaffold41472 TRF Tandem_Repeat 71029 71158 90 + . . scaffold41472 GLEAN mRNA 71029 71164 0.852158 + . ID=CGI_10005144; scaffold41472 TRF Tandem_Repeat 71029 71164 75 + . . scaffold41472 GLEAN mRNA 71029 71157 0.852158 + . ID=CGI_10005144; scaffold41472 TRF Tandem_Repeat 71029 71157 108 + . . scaffold41472 GLEAN mRNA 71719 71828 0.852158 + . ID=CGI_10005144; scaffold41472 TRF Tandem_Repeat 71719 71828 57 + . . scaffold41472 GLEAN mRNA 84008 84047 0.852158 + . ID=CGI_10005144; scaffold41472 TRF Tandem_Repeat 84008 84047 80 + . . scaffold41472 GLEAN mRNA 88040 88087 0.852158 + . ID=CGI_10005144; scaffold41472 TRF Tandem_Repeat 88040 88087 96 + . . scaffold1634 GLEAN mRNA 3918 3960 1 + . ID=CGI_10005149; scaffold1634 TRF Tandem_Repeat 3918 3960 86 + . . scaffold1634 GLEAN mRNA 4652 4687 1 + . ID=CGI_10005149; scaffold1634 TRF Tandem_Repeat 4652 4687 72 + . . scaffold1634 GLEAN mRNA 7767 7835 1 + . ID=CGI_10005149; scaffold1634 TRF Tandem_Repeat 7767 7835 57 + . . scaffold1634 GLEAN mRNA 12717 12766 1 + . ID=CGI_10005149; scaffold1634 TRF Tandem_Repeat 12717 12766 66 + . . scaffold1634 GLEAN mRNA 12721 12767 1 + . ID=CGI_10005149; scaffold1634 TRF Tandem_Repeat 12721 12767 78 + . . scaffold1634 GLEAN mRNA 20816 20850 0.999999 - . ID=CGI_10005150; scaffold1634 TRF Tandem_Repeat 20816 20850 61 + . . scaffold1634 GLEAN mRNA 25964 26149 0.999999 - . ID=CGI_10005150; scaffold1634 WUBlastX LINE_Penelope 25964 26149 37 - . . scaffold1634 GLEAN mRNA 83395 83745 0.992943 + . ID=CGI_10005152; scaffold1634 WUBlastX LTR_Ngaro 83395 83745 90 - . . scaffold1634 GLEAN mRNA 83782 84510 0.992943 + . ID=CGI_10005152; scaffold1634 WUBlastX LTR_Ngaro 83782 84510 526 - . . scaffold1634 GLEAN mRNA 84558 85061 0.992943 + . ID=CGI_10005152; scaffold1634 WUBlastX LTR_Ngaro 84558 85061 87 - . . scaffold1634 GLEAN mRNA 85112 85216 0.992943 + . ID=CGI_10005152; scaffold1634 WUBlastX LTR_Ngaro 85112 85216 59 - . . scaffold1634 GLEAN mRNA 84747 85079 0.992943 + . ID=CGI_10005152; scaffold1634 WUBlastX LTR_Ngaro 84747 85079 155 - . . scaffold1634 GLEAN mRNA 91651 91839 0.998588 + . ID=CGI_10005153; scaffold1634 WUBlastX DNA_TcMar-Fot1 91651 91839 44 - . . scaffold1634 GLEAN mRNA 91374 91628 0.998588 + . ID=CGI_10005153; scaffold1634 WUBlastX DNA_TcMar-Fot1 91374 91628 100 - . . scaffold1634 GLEAN mRNA 91308 91637 0.998588 + . ID=CGI_10005153; scaffold1634 WUBlastX DNA_TcMar-Fot1 91308 91637 47 - . . scaffold1634 GLEAN mRNA 100114 100215 0.998817 - . ID=CGI_10005154; scaffold1634 WUBlastX LTR_Copia 100090 100215 36 - . . scaffold1634 GLEAN mRNA 118104 118142 0.777738 - . ID=CGI_10005155; scaffold1634 TRF Tandem_Repeat 118104 118142 78 + . . scaffold1634 GLEAN mRNA 118374 118411 0.777738 - . ID=CGI_10005155; scaffold1634 TRF Tandem_Repeat 118374 118411 76 + . . scaffold1634 GLEAN mRNA 119377 119415 0.777738 - . ID=CGI_10005155; scaffold1634 TRF Tandem_Repeat 119377 119415 78 + . . scaffold1567 GLEAN mRNA 10344 10455 0.991842 - . ID=CGI_10005156; scaffold1567 TRF Tandem_Repeat 10344 10455 154 + . . scaffold1567 GLEAN mRNA 37924 38039 1 + . ID=CGI_10005157; scaffold1567 TRF Tandem_Repeat 37924 38039 67 + . . scaffold1567 GLEAN mRNA 37941 38039 1 + . ID=CGI_10005157; scaffold1567 TRF Tandem_Repeat 37941 38039 75 + . . scaffold41604 GLEAN mRNA 54635 54669 0.477604 - . ID=CGI_10005160; scaffold41604 TRF Tandem_Repeat 54635 54669 52 + . . scaffold534 GLEAN mRNA 4294 4326 1 - . ID=CGI_10005162; scaffold534 TRF Tandem_Repeat 4294 4326 57 + . . scaffold534 GLEAN mRNA 3639 3821 1 - . ID=CGI_10005162; scaffold534 WUBlastX DNA_TcMar-Marin 3639 3821 51 + . . scaffold534 GLEAN mRNA 71444 72352 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LTR_Gypsy 71444 72352 114 - . . scaffold534 GLEAN mRNA 69574 70653 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LTR_Gypsy-Cigr 69574 70653 447 - . . scaffold534 GLEAN mRNA 67151 67840 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LTR_ERV1 67151 67840 97 - . . scaffold534 GLEAN mRNA 67906 68277 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LTR_Gypsy 67906 68277 68 - . . scaffold534 GLEAN mRNA 71501 72514 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LTR_Gypsy-Cigr 71501 72514 59 - . . scaffold534 GLEAN mRNA 67864 68220 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LTR_Gypsy 67864 68220 113 - . . scaffold534 GLEAN mRNA 70837 71496 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LTR_Gypsy 70837 71496 563 - . . scaffold534 GLEAN mRNA 69532 69690 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LTR_Gypsy 69532 69690 32 - . . scaffold534 GLEAN mRNA 67870 68166 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LTR_Gypsy-Cigr 67870 68166 214 - . . scaffold534 GLEAN mRNA 70072 70656 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LTR_Gypsy 70072 70656 490 - . . scaffold534 GLEAN mRNA 73828 74352 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LINE_L1-Tx1 73828 74352 168 + . . scaffold534 GLEAN mRNA 74255 75427 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LINE_L1-Tx1 74255 75427 139 + . . scaffold534 GLEAN mRNA 67262 67864 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LTR_Gypsy 67262 67864 341 - . . scaffold534 GLEAN mRNA 70756 71541 0.716363 + . ID=CGI_10005164; scaffold534 WUBlastX LTR_Gypsy 70756 71541 309 - . . scaffold1823 GLEAN mRNA 10971 14362 0.99778 + . ID=CGI_10005168; scaffold1823 TRF Tandem_Repeat 10971 14362 4618 + . . scaffold1823 GLEAN mRNA 15073 15811 0.99778 + . ID=CGI_10005168; scaffold1823 TRF Tandem_Repeat 15073 15811 925 + . . scaffold1823 GLEAN mRNA 19828 19884 0.99778 + . ID=CGI_10005168; scaffold1823 TRF Tandem_Repeat 19828 19884 105 + . . scaffold1823 GLEAN mRNA 19991 20036 0.99778 + . ID=CGI_10005168; scaffold1823 TRF Tandem_Repeat 19991 20036 92 + . . scaffold1823 GLEAN mRNA 17914 18816 0.99778 + . ID=CGI_10005168; scaffold1823 WUBlastX LINE_L2 17914 18816 406 - . . scaffold1823 GLEAN mRNA 15810 16719 0.99778 + . ID=CGI_10005168; scaffold1823 TRF Tandem_Repeat 15810 16719 1345 + . . scaffold1823 GLEAN mRNA 30328 30393 0.99537 + . ID=CGI_10005169; scaffold1823 TRF Tandem_Repeat 30328 30393 107 + . . scaffold1823 GLEAN mRNA 30331 30392 0.99537 + . ID=CGI_10005169; scaffold1823 TRF Tandem_Repeat 30331 30392 63 + . . scaffold1823 GLEAN mRNA 26459 27103 0.99537 + . ID=CGI_10005169; scaffold1823 WUBlastX DNA_Kolobok-IS4 26459 27103 78 + . . scaffold41502 GLEAN mRNA 5604 5655 0.838822 + . ID=CGI_10005171; scaffold41502 TRF Tandem_Repeat 5604 5655 104 + . . scaffold41502 GLEAN mRNA 8764 8853 0.838822 + . ID=CGI_10005171; scaffold41502 TRF Tandem_Repeat 8764 8853 78 + . . scaffold41502 GLEAN mRNA 8746 8846 0.838822 + . ID=CGI_10005171; scaffold41502 TRF Tandem_Repeat 8746 8846 76 + . . scaffold41502 GLEAN mRNA 9306 9361 0.838822 + . ID=CGI_10005171; scaffold41502 TRF Tandem_Repeat 9306 9361 112 + . . scaffold41502 GLEAN mRNA 14998 15058 0.838822 + . ID=CGI_10005171; scaffold41502 TRF Tandem_Repeat 14998 15058 52 + . . scaffold41502 GLEAN mRNA 17108 17325 0.838822 + . ID=CGI_10005171; scaffold41502 TRF Tandem_Repeat 17108 17325 196 + . . scaffold41502 GLEAN mRNA 17430 17555 0.838822 + . ID=CGI_10005171; scaffold41502 TRF Tandem_Repeat 17430 17555 225 + . . scaffold41502 GLEAN mRNA 27636 28853 0.838822 + . ID=CGI_10005171; scaffold41502 WUBlastX DNA_MuDR 27636 28853 153 + . . scaffold41502 GLEAN mRNA 50572 50607 0.999593 - . ID=CGI_10005172; scaffold41502 TRF Tandem_Repeat 50572 50607 72 + . . scaffold41502 GLEAN mRNA 72062 72191 0.426914 + . ID=CGI_10005174; scaffold41502 TRF Tandem_Repeat 72062 72191 75 + . . scaffold41502 GLEAN mRNA 72115 72197 0.426914 + . ID=CGI_10005174; scaffold41502 TRF Tandem_Repeat 72115 72197 51 + . . scaffold41502 GLEAN mRNA 72082 72197 0.426914 + . ID=CGI_10005174; scaffold41502 TRF Tandem_Repeat 72082 72197 92 + . . scaffold41502 GLEAN mRNA 83143 83174 0.426914 + . ID=CGI_10005174; scaffold41502 TRF Tandem_Repeat 83143 83174 55 + . . scaffold41502 GLEAN mRNA 84099 84194 0.426914 + . ID=CGI_10005174; scaffold41502 WUBlastX LTR_Pao 84099 84194 21 - . . scaffold41502 GLEAN mRNA 104398 104658 0.98494 + . ID=CGI_10005175; scaffold41502 TRF Tandem_Repeat 104398 104658 432 + . . scaffold41502 GLEAN mRNA 105464 105766 0.98494 + . ID=CGI_10005175; scaffold41502 TRF Tandem_Repeat 105464 105766 516 + . . scaffold41502 GLEAN mRNA 106329 106515 0.98494 + . ID=CGI_10005175; scaffold41502 TRF Tandem_Repeat 106329 106515 266 + . . scaffold41502 GLEAN mRNA 106958 107060 0.98494 + . ID=CGI_10005175; scaffold41502 TRF Tandem_Repeat 106958 107060 161 + . . scaffold41502 GLEAN mRNA 107523 107745 0.98494 + . ID=CGI_10005175; scaffold41502 TRF Tandem_Repeat 107523 107745 356 + . . scaffold1488 GLEAN mRNA 31791 31822 0.401053 + . ID=CGI_10005177; scaffold1488 TRF Tandem_Repeat 31791 31822 64 + . . scaffold1488 GLEAN mRNA 51863 51912 0.401053 + . ID=CGI_10005177; scaffold1488 TRF Tandem_Repeat 51863 51912 91 + . . scaffold1488 GLEAN mRNA 96216 96554 0.719592 + . ID=CGI_10005179; scaffold1488 WUBlastX LINE_RTE-X 96216 96554 32 + . . scaffold1488 GLEAN mRNA 96273 96482 0.719592 + . ID=CGI_10005179; scaffold1488 WUBlastX LINE_RTE-X 96273 96482 53 + . . scaffold1488 GLEAN mRNA 96285 96545 0.719592 + . ID=CGI_10005179; scaffold1488 WUBlastX LINE_RTE-X 96285 96545 36 + . . scaffold1488 GLEAN mRNA 99748 100038 0.719592 + . ID=CGI_10005179; scaffold1488 WUBlastX LINE_RTE-X 99748 100038 27 + . . scaffold1488 GLEAN mRNA 99183 99683 0.719592 + . ID=CGI_10005179; scaffold1488 WUBlastX LINE_RTE-X 99183 99683 217 - . . scaffold1488 GLEAN mRNA 99039 99683 0.719592 + . ID=CGI_10005179; scaffold1488 WUBlastX LINE_RTE-X 99039 99683 167 - . . scaffold1488 GLEAN mRNA 115252 115350 0.719592 + . ID=CGI_10005179; scaffold1488 TRF Tandem_Repeat 115252 115350 99 + . . scaffold1488 GLEAN mRNA 116117 116250 0.719592 + . ID=CGI_10005179; scaffold1488 TRF Tandem_Repeat 116117 116250 110 + . . scaffold1488 GLEAN mRNA 119396 119936 0.719592 + . ID=CGI_10005179; scaffold1488 TRF Tandem_Repeat 119396 119936 974 + . . scaffold41530 GLEAN mRNA 33516 33547 0.944556 + . ID=CGI_10005185; scaffold41530 TRF Tandem_Repeat 33516 33547 64 + . . scaffold41530 GLEAN mRNA 49373 50501 1 - . ID=CGI_10005186; scaffold41530 TRF Tandem_Repeat 49373 50501 1098 + . . scaffold41530 GLEAN mRNA 49367 50501 1 - . ID=CGI_10005186; scaffold41530 TRF Tandem_Repeat 49367 50501 1348 + . . scaffold41530 GLEAN mRNA 49420 50501 1 - . ID=CGI_10005186; scaffold41530 TRF Tandem_Repeat 49420 50501 1661 + . . scaffold41530 GLEAN mRNA 97769 97814 0.999994 + . ID=CGI_10005191; scaffold41530 TRF Tandem_Repeat 97769 97814 65 + . . scaffold41530 GLEAN mRNA 97954 98002 0.999994 + . ID=CGI_10005191; scaffold41530 TRF Tandem_Repeat 97954 98002 98 + . . scaffold1564 GLEAN mRNA 58661 58709 0.999675 + . ID=CGI_10005196; scaffold1564 TRF Tandem_Repeat 58661 58709 98 + . . scaffold1564 GLEAN mRNA 61917 62483 0.999675 + . ID=CGI_10005196; scaffold1564 TRF Tandem_Repeat 61917 62483 551 + . . scaffold1564 GLEAN mRNA 61881 62507 0.999675 + . ID=CGI_10005196; scaffold1564 TRF Tandem_Repeat 61881 62507 649 + . . scaffold1564 GLEAN mRNA 61926 62483 0.999675 + . ID=CGI_10005196; scaffold1564 TRF Tandem_Repeat 61926 62483 740 + . . scaffold1564 GLEAN mRNA 76148 76209 0.84036 + . ID=CGI_10005198; scaffold1564 TRF Tandem_Repeat 76148 76209 124 + . . scaffold1564 GLEAN mRNA 81256 81286 0.650997 - . ID=CGI_10005199; scaffold1564 TRF Tandem_Repeat 81256 81286 62 + . . scaffold1564 GLEAN mRNA 81586 81893 0.650997 - . ID=CGI_10005199; scaffold1564 TRF Tandem_Repeat 81586 81893 386 + . . scaffold1564 GLEAN mRNA 98950 99027 0.650997 - . ID=CGI_10005199; scaffold1564 TRF Tandem_Repeat 98950 99027 93 + . . scaffold1564 GLEAN mRNA 98950 99027 0.650997 - . ID=CGI_10005199; scaffold1564 TRF Tandem_Repeat 98950 99027 93 + . . scaffold1564 GLEAN mRNA 98950 99027 0.650997 - . ID=CGI_10005199; scaffold1564 TRF Tandem_Repeat 98950 99027 93 + . . scaffold1564 GLEAN mRNA 107842 107934 0.650997 - . ID=CGI_10005199; scaffold1564 WUBlastX DNA_hAT-Ac 107842 107934 22 - . . scaffold1564 GLEAN mRNA 107714 107854 0.650997 - . ID=CGI_10005199; scaffold1564 WUBlastX DNA_hAT-Ac 107714 107854 55 - . . scaffold1564 GLEAN mRNA 108129 108248 0.650997 - . ID=CGI_10005199; scaffold1564 WUBlastX DNA_hAT-Ac 108129 108248 45 - . . scaffold1564 GLEAN mRNA 107842 108012 0.650997 - . ID=CGI_10005199; scaffold1564 WUBlastX DNA_hAT-Ac 107842 108012 22 - . . scaffold1191 GLEAN mRNA 79045 79567 0.517666 - . ID=CGI_10005211; scaffold1191 TRF Tandem_Repeat 79045 79567 775 + . . scaffold1191 GLEAN mRNA 73854 74585 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 73854 74585 85 - . . scaffold1191 GLEAN mRNA 74823 75002 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 74823 75002 48 - . . scaffold1191 GLEAN mRNA 77269 77529 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_MuDR 77269 77529 91 - . . scaffold1191 GLEAN mRNA 76952 77119 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 76952 77119 101 - . . scaffold1191 GLEAN mRNA 77314 77529 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 77314 77529 96 - . . scaffold1191 GLEAN mRNA 77532 77597 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 77532 77597 51 - . . scaffold1191 GLEAN mRNA 78155 78322 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 78155 78322 59 - . . scaffold1191 GLEAN mRNA 86896 86929 0.517666 - . ID=CGI_10005211; scaffold1191 TRF Tandem_Repeat 86896 86929 52 + . . scaffold1191 GLEAN mRNA 85005 85382 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX LTR_DIRS? 85005 85382 132 - . . scaffold1191 GLEAN mRNA 84999 85310 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX LTR_DIRS 84999 85310 238 - . . scaffold1191 GLEAN mRNA 89813 89860 0.89115 + . ID=CGI_10005212; scaffold1191 TRF Tandem_Repeat 89813 89860 96 + . . scaffold1191 GLEAN mRNA 94634 94677 0.89115 + . ID=CGI_10005212; scaffold1191 TRF Tandem_Repeat 94634 94677 81 + . . scaffold1191 GLEAN mRNA 96333 96360 0.89115 + . ID=CGI_10005212; scaffold1191 TRF Tandem_Repeat 96333 96360 56 + . . scaffold1191 GLEAN mRNA 93695 93928 0.89115 + . ID=CGI_10005212; scaffold1191 WUBlastX LINE_RTE-X 93695 93928 83 + . . scaffold1191 GLEAN mRNA 93749 93898 0.89115 + . ID=CGI_10005212; scaffold1191 WUBlastX LINE_RTE-X 93749 93898 98 + . . scaffold251 GLEAN mRNA 17046 17635 0.998838 - . ID=CGI_10005216; scaffold251 TRF Tandem_Repeat 17046 17635 593 + . . scaffold251 GLEAN mRNA 17040 17640 0.998838 - . ID=CGI_10005216; scaffold251 TRF Tandem_Repeat 17040 17640 1022 + . . scaffold251 GLEAN mRNA 17191 17640 0.998838 - . ID=CGI_10005216; scaffold251 TRF Tandem_Repeat 17191 17640 555 + . . scaffold251 GLEAN mRNA 19606 19789 0.998838 - . ID=CGI_10005216; scaffold251 TRF Tandem_Repeat 19606 19789 247 + . . scaffold251 GLEAN mRNA 19606 19798 0.998838 - . ID=CGI_10005216; scaffold251 TRF Tandem_Repeat 19606 19798 195 + . . scaffold251 GLEAN mRNA 21025 21099 0.998838 - . ID=CGI_10005216; scaffold251 TRF Tandem_Repeat 21025 21099 150 + . . scaffold251 GLEAN mRNA 21874 22152 0.998838 - . ID=CGI_10005216; scaffold251 TRF Tandem_Repeat 21874 22152 352 + . . scaffold251 GLEAN mRNA 21874 22152 0.998838 - . ID=CGI_10005216; scaffold251 TRF Tandem_Repeat 21874 22152 343 + . . scaffold251 GLEAN mRNA 29422 29718 0.998838 - . ID=CGI_10005216; scaffold251 TRF Tandem_Repeat 29422 29718 452 + . . scaffold251 GLEAN mRNA 34485 34647 0.998838 - . ID=CGI_10005216; scaffold251 TRF Tandem_Repeat 34485 34647 96 + . . scaffold251 GLEAN mRNA 34577 34722 0.998838 - . ID=CGI_10005216; scaffold251 TRF Tandem_Repeat 34577 34722 123 + . . scaffold251 GLEAN mRNA 38592 39527 0.998838 - . ID=CGI_10005216; scaffold251 WUBlastX LTR_DIRS 38592 39527 403 + . . scaffold251 GLEAN mRNA 37075 38733 0.998838 - . ID=CGI_10005216; scaffold251 WUBlastX LTR_DIRS 37075 38733 964 + . . scaffold251 GLEAN mRNA 29422 29718 0.0632149 + . ID=CGI_10005217; scaffold251 TRF Tandem_Repeat 29422 29718 452 + . . scaffold251 GLEAN mRNA 34485 34647 0.0632149 + . ID=CGI_10005217; scaffold251 TRF Tandem_Repeat 34485 34647 96 + . . scaffold251 GLEAN mRNA 34577 34722 0.0632149 + . ID=CGI_10005217; scaffold251 TRF Tandem_Repeat 34577 34722 123 + . . scaffold251 GLEAN mRNA 38592 39527 0.0632149 + . ID=CGI_10005217; scaffold251 WUBlastX LTR_DIRS 38592 39527 403 + . . scaffold251 GLEAN mRNA 37075 38733 0.0632149 + . ID=CGI_10005217; scaffold251 WUBlastX LTR_DIRS 37075 38733 964 + . . scaffold251 GLEAN mRNA 46005 46138 0.987119 - . ID=CGI_10005218; scaffold251 TRF Tandem_Repeat 46005 46138 162 + . . scaffold251 GLEAN mRNA 47711 47801 0.987119 - . ID=CGI_10005218; scaffold251 TRF Tandem_Repeat 47711 47801 94 + . . scaffold251 GLEAN mRNA 71860 71916 0.999943 - . ID=CGI_10005220; scaffold251 TRF Tandem_Repeat 71860 71916 51 + . . scaffold251 GLEAN mRNA 83821 83856 0.999999 - . ID=CGI_10005221; scaffold251 TRF Tandem_Repeat 83821 83856 54 + . . scaffold251 GLEAN mRNA 83830 83869 0.999999 - . ID=CGI_10005221; scaffold251 TRF Tandem_Repeat 83830 83869 53 + . . scaffold251 GLEAN mRNA 83821 83869 0.999999 - . ID=CGI_10005221; scaffold251 TRF Tandem_Repeat 83821 83869 62 + . . scaffold251 GLEAN mRNA 106338 106679 0.904704 - . ID=CGI_10005222; scaffold251 WUBlastX DNA_TcMar-Tc1 106338 106679 81 - . . scaffold1427 GLEAN mRNA 7756 7937 0.901139 + . ID=CGI_10005223; scaffold1427 TRF Tandem_Repeat 7756 7937 301 + . . scaffold1427 GLEAN mRNA 7944 8210 0.901139 + . ID=CGI_10005223; scaffold1427 TRF Tandem_Repeat 7944 8210 256 + . . scaffold1427 GLEAN mRNA 9136 9378 0.901139 + . ID=CGI_10005223; scaffold1427 TRF Tandem_Repeat 9136 9378 235 + . . scaffold1427 GLEAN mRNA 9136 9378 0.997215 - . ID=CGI_10005224; scaffold1427 TRF Tandem_Repeat 9136 9378 235 + . . scaffold1427 GLEAN mRNA 85724 86299 0.375742 + . ID=CGI_10005230; scaffold1427 WUBlastX LTR_Gypsy 85724 86299 80 + . . scaffold1427 GLEAN mRNA 84956 85282 0.375742 + . ID=CGI_10005230; scaffold1427 WUBlastX LTR_Gypsy 84956 85282 96 + . . scaffold1427 GLEAN mRNA 85070 86203 0.375742 + . ID=CGI_10005230; scaffold1427 WUBlastX LTR_Gypsy 85070 86203 339 + . . scaffold1427 GLEAN mRNA 84946 84978 0.375742 + . ID=CGI_10005230; scaffold1427 WUBlastX LTR_Gypsy 84946 84978 21 + . . scaffold1427 GLEAN mRNA 105745 106023 0.382647 + . ID=CGI_10005232; scaffold1427 WUBlastX DNA_Harbinger 105745 106023 36 - . . scaffold1427 GLEAN mRNA 104753 105265 0.382647 + . ID=CGI_10005232; scaffold1427 WUBlastX DNA_Harbinger 104753 105265 192 - . . scaffold1427 GLEAN mRNA 104834 105268 0.382647 + . ID=CGI_10005232; scaffold1427 WUBlastX DNA_Harbinger 104834 105268 215 - . . scaffold1427 GLEAN mRNA 105790 106092 0.382647 + . ID=CGI_10005232; scaffold1427 WUBlastX DNA_Harbinger 105790 106092 41 - . . scaffold1427 GLEAN mRNA 105231 105575 0.382647 + . ID=CGI_10005232; scaffold1427 WUBlastX DNA_Harbinger 105231 105575 58 - . . scaffold1427 GLEAN mRNA 105351 105629 0.382647 + . ID=CGI_10005232; scaffold1427 WUBlastX DNA_Harbinger 105351 105629 87 - . . scaffold41550 GLEAN mRNA 4041 4111 0.999612 + . ID=CGI_10005235; scaffold41550 TRF Tandem_Repeat 4041 4111 70 + . . scaffold41550 GLEAN mRNA 4037 4099 0.999612 + . ID=CGI_10005235; scaffold41550 TRF Tandem_Repeat 4037 4099 65 + . . scaffold41550 GLEAN mRNA 6424 6689 0.999612 + . ID=CGI_10005235; scaffold41550 TRF Tandem_Repeat 6424 6689 229 + . . scaffold41550 GLEAN mRNA 6413 6689 0.999612 + . ID=CGI_10005235; scaffold41550 TRF Tandem_Repeat 6413 6689 186 + . . scaffold41550 GLEAN mRNA 9559 9599 0.999612 + . ID=CGI_10005235; scaffold41550 TRF Tandem_Repeat 9559 9599 82 + . . scaffold41550 GLEAN mRNA 13158 13191 0.99995 - . ID=CGI_10005236; scaffold41550 TRF Tandem_Repeat 13158 13191 54 + . . scaffold1115 GLEAN mRNA 54463 54512 0.999124 - . ID=CGI_10005241; scaffold1115 TRF Tandem_Repeat 54463 54512 84 + . . scaffold1115 GLEAN mRNA 110334 110849 0.265075 + . ID=CGI_10005242; scaffold1115 TRF Tandem_Repeat 110334 110849 403 + . . scaffold1115 GLEAN mRNA 110931 111106 0.265075 + . ID=CGI_10005242; scaffold1115 TRF Tandem_Repeat 110931 111106 162 + . . scaffold41540 GLEAN mRNA 18571 18628 0.593383 + . ID=CGI_10005243; scaffold41540 TRF Tandem_Repeat 18571 18628 82 + . . scaffold41540 GLEAN mRNA 18571 18628 0.593383 + . ID=CGI_10005243; scaffold41540 TRF Tandem_Repeat 18571 18628 82 + . . scaffold41540 GLEAN mRNA 18583 18628 0.593383 + . ID=CGI_10005243; scaffold41540 TRF Tandem_Repeat 18583 18628 56 + . . scaffold41540 GLEAN mRNA 27222 27274 0.593383 + . ID=CGI_10005243; scaffold41540 TRF Tandem_Repeat 27222 27274 88 + . . scaffold41540 GLEAN mRNA 48286 48318 0.702191 - . ID=CGI_10005244; scaffold41540 TRF Tandem_Repeat 48286 48318 57 + . . scaffold41540 GLEAN mRNA 48519 48762 0.702191 - . ID=CGI_10005244; scaffold41540 TRF Tandem_Repeat 48519 48762 247 + . . scaffold41540 GLEAN mRNA 63518 63584 0.558093 + . ID=CGI_10005245; scaffold41540 TRF Tandem_Repeat 63518 63584 89 + . . scaffold41540 GLEAN mRNA 85635 85662 0.999601 + . ID=CGI_10005247; scaffold41540 TRF Tandem_Repeat 85635 85662 56 + . . scaffold41540 GLEAN mRNA 85661 85688 0.999601 + . ID=CGI_10005247; scaffold41540 TRF Tandem_Repeat 85661 85688 56 + . . scaffold41534 GLEAN mRNA 1390 1471 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 1390 1471 137 + . . scaffold41534 GLEAN mRNA 8822 9166 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 8822 9166 247 + . . scaffold41534 GLEAN mRNA 11570 11790 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 11570 11790 243 + . . scaffold41534 GLEAN mRNA 15895 16159 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 15895 16159 476 + . . scaffold41534 GLEAN mRNA 17469 17508 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 17469 17508 62 + . . scaffold41534 GLEAN mRNA 22730 22762 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 22730 22762 66 + . . scaffold41534 GLEAN mRNA 28726 29068 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 28726 29068 488 + . . scaffold41534 GLEAN mRNA 30040 30123 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 30040 30123 107 + . . scaffold41534 GLEAN mRNA 44083 44134 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 44083 44134 68 + . . scaffold41534 GLEAN mRNA 51865 51974 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 51865 51974 86 + . . scaffold41534 GLEAN mRNA 55294 55340 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 55294 55340 60 + . . scaffold41534 GLEAN mRNA 63989 64091 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 63989 64091 80 + . . scaffold41534 GLEAN mRNA 64180 64590 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 64180 64590 267 + . . scaffold41534 GLEAN mRNA 64235 64590 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 64235 64590 207 + . . scaffold41534 GLEAN mRNA 64273 64590 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 64273 64590 219 + . . scaffold1817 GLEAN mRNA 18989 19038 0.453567 - . ID=CGI_10005250; scaffold1817 TRF Tandem_Repeat 18989 19038 100 + . . scaffold1817 GLEAN mRNA 24829 25320 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LTR_Gypsy 24829 25320 76 + . . scaffold1817 GLEAN mRNA 17748 18128 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LINE_L1-Tx1 17748 18128 99 + . . scaffold1817 GLEAN mRNA 18119 18400 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LINE_L1-Tx1 18119 18400 91 + . . scaffold1817 GLEAN mRNA 24048 24665 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LTR_Gypsy 24048 24665 145 + . . scaffold1817 GLEAN mRNA 17588 17683 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LINE_L1-Tx1 17588 17683 27 + . . scaffold1817 GLEAN mRNA 24940 28668 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LTR_Gypsy-Cigr 24940 28668 1367 + . . scaffold1817 GLEAN mRNA 24666 24767 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LTR_Gypsy 24666 24767 20 + . . scaffold1817 GLEAN mRNA 17640 18032 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LINE_L1-Tx1 17640 18032 45 + . . scaffold1817 GLEAN mRNA 28480 28845 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LTR_Copia 28480 28845 45 + . . scaffold1817 GLEAN mRNA 23955 24503 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LTR_Gypsy-Cigr 23955 24503 47 + . . scaffold1817 GLEAN mRNA 36936 36970 0.453567 - . ID=CGI_10005250; scaffold1817 TRF Tandem_Repeat 36936 36970 52 + . . scaffold1817 GLEAN mRNA 44076 44113 0.453567 - . ID=CGI_10005250; scaffold1817 TRF Tandem_Repeat 44076 44113 51 + . . scaffold1817 GLEAN mRNA 16353 16541 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LINE_L1-Tx1 16353 16541 44 + . . scaffold41588 GLEAN mRNA 6900 7064 0.999676 + . ID=CGI_10005252; scaffold41588 TRF Tandem_Repeat 6900 7064 86 + . . scaffold41588 GLEAN mRNA 6941 7066 0.999676 + . ID=CGI_10005252; scaffold41588 TRF Tandem_Repeat 6941 7066 94 + . . scaffold41588 GLEAN mRNA 10784 11214 0.999676 + . ID=CGI_10005252; scaffold41588 TRF Tandem_Repeat 10784 11214 509 + . . scaffold41588 GLEAN mRNA 10784 11948 0.999676 + . ID=CGI_10005252; scaffold41588 TRF Tandem_Repeat 10784 11948 1009 + . . scaffold41588 GLEAN mRNA 10782 11948 0.999676 + . ID=CGI_10005252; scaffold41588 TRF Tandem_Repeat 10782 11948 1040 + . . scaffold41588 GLEAN mRNA 11237 11948 0.999676 + . ID=CGI_10005252; scaffold41588 TRF Tandem_Repeat 11237 11948 573 + . . scaffold41588 GLEAN mRNA 11237 11948 0.999676 + . ID=CGI_10005252; scaffold41588 TRF Tandem_Repeat 11237 11948 614 + . . scaffold41588 GLEAN mRNA 14127 14493 0.999676 + . ID=CGI_10005252; scaffold41588 TRF Tandem_Repeat 14127 14493 553 + . . scaffold41588 GLEAN mRNA 14267 14332 0.999676 + . ID=CGI_10005252; scaffold41588 TRF Tandem_Repeat 14267 14332 75 + . . scaffold41588 GLEAN mRNA 15771 15810 0.999676 + . ID=CGI_10005252; scaffold41588 TRF Tandem_Repeat 15771 15810 50 + . . scaffold41588 GLEAN mRNA 15980 17133 0.999676 + . ID=CGI_10005252; scaffold41588 TRF Tandem_Repeat 15980 17133 1359 + . . scaffold41588 GLEAN mRNA 31920 32179 0.99986 - . ID=CGI_10005253; scaffold41588 TRF Tandem_Repeat 31920 32179 269 + . . scaffold41588 GLEAN mRNA 43144 43510 1 + . ID=CGI_10005254; scaffold41588 TRF Tandem_Repeat 43144 43510 303 + . . scaffold41588 GLEAN mRNA 52709 52900 0.998791 - . ID=CGI_10005255; scaffold41588 TRF Tandem_Repeat 52709 52900 321 + . . scaffold41588 GLEAN mRNA 61386 62003 0.998791 - . ID=CGI_10005255; scaffold41588 WUBlastX LINE_RTE-X 61386 62003 73 - . . scaffold41588 GLEAN mRNA 68236 68562 0.998791 - . ID=CGI_10005255; scaffold41588 TRF Tandem_Repeat 68236 68562 430 + . . scaffold41588 GLEAN mRNA 68236 68539 0.998791 - . ID=CGI_10005255; scaffold41588 TRF Tandem_Repeat 68236 68539 486 + . . scaffold663 GLEAN mRNA 100758 104456 0.999692 - . ID=CGI_10005264; scaffold663 WUBlastX LTR_Gypsy 100758 104693 2986 - . . scaffold663 GLEAN mRNA 118432 118490 0.999993 + . ID=CGI_10005265; scaffold663 TRF Tandem_Repeat 118432 118490 59 + . . scaffold663 GLEAN mRNA 118813 118859 0.999993 + . ID=CGI_10005265; scaffold663 TRF Tandem_Repeat 118813 118859 58 + . . scaffold663 GLEAN mRNA 118812 118871 0.999993 + . ID=CGI_10005265; scaffold663 TRF Tandem_Repeat 118812 118871 84 + . . scaffold663 GLEAN mRNA 118821 118872 0.999993 + . ID=CGI_10005265; scaffold663 TRF Tandem_Repeat 118821 118872 50 + . . scaffold663 GLEAN mRNA 119232 119255 0.999993 + . ID=CGI_10005265; scaffold663 WUBlastX LINE_RTE-X 119232 119402 32 - . . scaffold41546 GLEAN mRNA 35997 36056 1 + . ID=CGI_10005267; scaffold41546 TRF Tandem_Repeat 35997 36056 120 + . . scaffold41546 GLEAN mRNA 47880 48590 0.986293 + . ID=CGI_10005268; scaffold41546 WUBlastX LINE_L1-Tx1 47880 48590 500 - . . scaffold41546 GLEAN mRNA 49474 49526 0.986293 + . ID=CGI_10005268; scaffold41546 TRF Tandem_Repeat 49474 49526 70 + . . scaffold41546 GLEAN mRNA 48903 49376 0.986293 + . ID=CGI_10005268; scaffold41546 WUBlastX LINE_L2 48903 49376 95 - . . scaffold41546 GLEAN mRNA 48906 49622 0.986293 + . ID=CGI_10005268; scaffold41546 WUBlastX LINE_L2 48906 49622 83 - . . scaffold41546 GLEAN mRNA 104454 104588 0.999608 + . ID=CGI_10005272; scaffold41546 TRF Tandem_Repeat 104454 104588 193 + . . scaffold41546 GLEAN mRNA 113494 113537 0.999608 + . ID=CGI_10005272; scaffold41546 TRF Tandem_Repeat 113494 113537 61 + . . scaffold810 GLEAN mRNA 99695 99750 0.857392 + . ID=CGI_10005277; scaffold810 TRF Tandem_Repeat 99695 99750 112 + . . scaffold41560 GLEAN mRNA 78385 78627 1 + . ID=CGI_10005281; scaffold41560 WUBlastX DNA_Kolobok 78385 78627 131 + . . scaffold41560 GLEAN mRNA 84180 84432 1 - . ID=CGI_10005282; scaffold41560 TRF Tandem_Repeat 84180 84432 376 + . . scaffold41560 GLEAN mRNA 86457 86555 1 - . ID=CGI_10005282; scaffold41560 WUBlastX LINE_CR1 86457 86555 37 - . . scaffold41560 GLEAN mRNA 86036 86413 1 - . ID=CGI_10005282; scaffold41560 WUBlastX LINE_L2 86036 86413 112 - . . scaffold41560 GLEAN mRNA 86027 86482 1 - . ID=CGI_10005282; scaffold41560 WUBlastX LINE_CR1-L2 86027 86482 81 - . . scaffold41560 GLEAN mRNA 107209 107256 1 + . ID=CGI_10005285; scaffold41560 TRF Tandem_Repeat 107209 107256 96 + . . scaffold41560 GLEAN mRNA 112199 112231 1 + . ID=CGI_10005285; scaffold41560 TRF Tandem_Repeat 112199 112231 57 + . . scaffold41560 GLEAN mRNA 109161 109610 1 + . ID=CGI_10005285; scaffold41560 WUBlastX LINE_RTE-X 109161 109610 125 + . . scaffold41560 GLEAN mRNA 110175 110351 1 + . ID=CGI_10005285; scaffold41560 WUBlastX LINE_RTE-X 110175 110351 50 + . . scaffold41560 GLEAN mRNA 109161 109541 1 + . ID=CGI_10005285; scaffold41560 WUBlastX LINE_RTE-X 109161 109541 181 + . . scaffold41560 GLEAN mRNA 110217 110426 1 + . ID=CGI_10005285; scaffold41560 WUBlastX LINE_RTE-X 110217 110426 66 + . . scaffold41560 GLEAN mRNA 109083 109541 1 + . ID=CGI_10005285; scaffold41560 WUBlastX LINE_RTE-X 109083 109541 111 + . . scaffold41560 GLEAN mRNA 110121 110315 1 + . ID=CGI_10005285; scaffold41560 WUBlastX LINE_RTE-X 110121 110315 21 + . . scaffold935 GLEAN mRNA 8095 8298 0.998439 + . ID=CGI_10005288; scaffold935 WUBlastX DNA_TcMar-Tc2 7939 8298 100 + . . scaffold935 GLEAN mRNA 8095 8298 0.998439 + . ID=CGI_10005288; scaffold935 WUBlastX DNA_TcMar-Tc2 7750 8298 94 + . . scaffold41594 GLEAN mRNA 14423 14930 0.805622 - . ID=CGI_10005291; scaffold41594 TRF Tandem_Repeat 14423 14930 554 + . . scaffold41594 GLEAN mRNA 14641 15009 0.805622 - . ID=CGI_10005291; scaffold41594 TRF Tandem_Repeat 14641 15009 370 + . . scaffold41594 GLEAN mRNA 16985 17023 0.805622 - . ID=CGI_10005291; scaffold41594 TRF Tandem_Repeat 16985 17023 78 + . . scaffold41572 GLEAN mRNA 33315 33367 0.65106 + . ID=CGI_10005293; scaffold41572 TRF Tandem_Repeat 33315 33367 106 + . . scaffold41572 GLEAN mRNA 33443 33504 0.65106 + . ID=CGI_10005293; scaffold41572 TRF Tandem_Repeat 33443 33504 97 + . . scaffold41572 GLEAN mRNA 39352 39403 0.65106 + . ID=CGI_10005293; scaffold41572 TRF Tandem_Repeat 39352 39403 68 + . . scaffold41572 GLEAN mRNA 39373 39418 0.65106 + . ID=CGI_10005293; scaffold41572 TRF Tandem_Repeat 39373 39418 65 + . . scaffold41572 GLEAN mRNA 39352 39418 0.65106 + . ID=CGI_10005293; scaffold41572 TRF Tandem_Repeat 39352 39418 89 + . . scaffold41572 GLEAN mRNA 45141 45194 1 + . ID=CGI_10005294; scaffold41572 TRF Tandem_Repeat 45141 45194 90 + . . scaffold41572 GLEAN mRNA 45637 46286 1 + . ID=CGI_10005294; scaffold41572 TRF Tandem_Repeat 45637 46286 924 + . . scaffold41572 GLEAN mRNA 75081 75326 0.810505 - . ID=CGI_10005295; scaffold41572 TRF Tandem_Repeat 75081 75326 171 + . . scaffold41572 GLEAN mRNA 75114 75325 0.810505 - . ID=CGI_10005295; scaffold41572 TRF Tandem_Repeat 75114 75325 174 + . . scaffold41572 GLEAN mRNA 65688 65879 0.810505 - . ID=CGI_10005295; scaffold41572 WUBlastX LTR_Copia 65688 65879 26 - . . scaffold41572 GLEAN mRNA 85457 85670 0.537079 + . ID=CGI_10005296; scaffold41572 TRF Tandem_Repeat 85457 85670 315 + . . scaffold41572 GLEAN mRNA 89956 90374 0.537079 + . ID=CGI_10005296; scaffold41572 TRF Tandem_Repeat 89956 90374 468 + . . scaffold41572 GLEAN mRNA 93757 94724 0.537079 + . ID=CGI_10005296; scaffold41572 TRF Tandem_Repeat 93757 94724 1433 + . . scaffold41572 GLEAN mRNA 93757 94724 0.537079 + . ID=CGI_10005296; scaffold41572 TRF Tandem_Repeat 93757 94724 1359 + . . scaffold41572 GLEAN mRNA 93757 94724 0.537079 + . ID=CGI_10005296; scaffold41572 TRF Tandem_Repeat 93757 94724 1461 + . . scaffold41572 GLEAN mRNA 96198 96400 0.537079 + . ID=CGI_10005296; scaffold41572 TRF Tandem_Repeat 96198 96400 334 + . . scaffold41572 GLEAN mRNA 102705 103045 0.537079 + . ID=CGI_10005296; scaffold41572 TRF Tandem_Repeat 102705 103045 619 + . . scaffold41572 GLEAN mRNA 103128 103417 0.537079 + . ID=CGI_10005296; scaffold41572 TRF Tandem_Repeat 103128 103417 553 + . . scaffold41572 GLEAN mRNA 97130 98660 0.537079 + . ID=CGI_10005296; scaffold41572 TRF Tandem_Repeat 97130 98660 2433 + . . scaffold41572 GLEAN mRNA 115583 115624 1 + . ID=CGI_10005297; scaffold41572 TRF Tandem_Repeat 115583 115624 84 + . . scaffold41572 GLEAN mRNA 117695 117777 1 + . ID=CGI_10005297; scaffold41572 TRF Tandem_Repeat 117695 117777 159 + . . scaffold41568 GLEAN mRNA 69989 70378 0.618186 + . ID=CGI_10005299; scaffold41568 WUBlastX DNA_IS4EU 69899 70441 85 + . . scaffold41568 GLEAN mRNA 79618 79659 0.978007 + . ID=CGI_10005300; scaffold41568 TRF Tandem_Repeat 79618 79659 50 + . . scaffold41568 GLEAN mRNA 77737 77961 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LINE_RTE-X 77737 77961 25 - . . scaffold41568 GLEAN mRNA 75669 76832 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX DNA_Crypton 75669 76832 200 + . . scaffold41568 GLEAN mRNA 78120 78305 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LINE_RTE-X 78120 78305 76 - . . scaffold41568 GLEAN mRNA 78117 78443 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LINE_RTE-X 78117 78443 24 - . . scaffold41568 GLEAN mRNA 77939 78112 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LINE_RTE-X 77939 78112 42 - . . scaffold41568 GLEAN mRNA 77746 77895 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LINE_RTE-X 77746 77895 36 - . . scaffold41568 GLEAN mRNA 86065 86145 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 86065 86145 25 + . . scaffold41568 GLEAN mRNA 86151 88502 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 86151 88502 1891 + . . scaffold41568 GLEAN mRNA 89055 89894 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 89055 89894 605 + . . scaffold41568 GLEAN mRNA 84989 85408 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 84989 85408 266 + . . scaffold41568 GLEAN mRNA 85441 85632 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 85441 85632 98 + . . scaffold41568 GLEAN mRNA 85661 85885 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 85661 85885 50 + . . scaffold41568 GLEAN mRNA 86124 86213 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 86124 86213 29 + . . scaffold41568 GLEAN mRNA 86871 89534 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 86871 89534 636 + . . scaffold41568 GLEAN mRNA 89055 90053 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX LTR_Gypsy 89055 90053 129 + . . scaffold41568 GLEAN mRNA 118896 120300 0.555784 + . ID=CGI_10005301; scaffold41568 TRF Tandem_Repeat 118896 120429 1889 + . . scaffold41598 GLEAN mRNA 34365 34411 0.794797 - . ID=CGI_10005303; scaffold41598 TRF Tandem_Repeat 34365 34411 94 + . . scaffold41598 GLEAN mRNA 63940 64024 0.449575 - . ID=CGI_10005304; scaffold41598 TRF Tandem_Repeat 63940 64024 161 + . . scaffold41598 GLEAN mRNA 61070 61492 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_En-Spm 61070 61492 119 - . . scaffold41598 GLEAN mRNA 61492 61686 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_En-Spm 61492 61686 22 - . . scaffold41598 GLEAN mRNA 69858 69916 0.449575 - . ID=CGI_10005304; scaffold41598 TRF Tandem_Repeat 69858 69916 109 + . . scaffold41598 GLEAN mRNA 65707 65775 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_PiggyBac 65707 65775 31 - . . scaffold41598 GLEAN mRNA 66464 66574 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_PiggyBac 66464 66574 53 - . . scaffold41598 GLEAN mRNA 66808 66969 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_PiggyBac 66808 66969 36 - . . scaffold41598 GLEAN mRNA 74305 74463 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_PiggyBac 74305 74463 52 - . . scaffold41598 GLEAN mRNA 66159 66365 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_PiggyBac 66159 66365 123 - . . scaffold41598 GLEAN mRNA 65913 66404 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_PiggyBac 65913 66404 72 - . . scaffold41598 GLEAN mRNA 66865 67101 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_PiggyBac 66865 67101 51 - . . scaffold41598 GLEAN mRNA 66159 66413 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_PiggyBac 66159 66413 104 - . . scaffold41598 GLEAN mRNA 66009 66413 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_PiggyBac 66009 66413 94 - . . scaffold41598 GLEAN mRNA 66446 66586 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_PiggyBac 66446 66586 52 - . . scaffold41598 GLEAN mRNA 66380 66574 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_PiggyBac 66380 66574 40 - . . scaffold41598 GLEAN mRNA 73493 73783 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_hAT-Tip100 73493 73783 148 - . . scaffold1514 GLEAN mRNA 44424 44470 0.945059 + . ID=CGI_10005308; scaffold1514 TRF Tandem_Repeat 44424 44470 85 + . . scaffold1581 GLEAN mRNA 16436 17203 0.999661 + . ID=CGI_10005309; scaffold1581 WUBlastX LINE_L2 16436 17203 21 + . . scaffold1581 GLEAN mRNA 57718 57759 0.999605 + . ID=CGI_10005311; scaffold1581 TRF Tandem_Repeat 57718 57759 77 + . . scaffold1581 GLEAN mRNA 58622 58686 0.999605 + . ID=CGI_10005311; scaffold1581 TRF Tandem_Repeat 58622 58686 62 + . . scaffold1581 GLEAN mRNA 58598 58713 0.999605 + . ID=CGI_10005311; scaffold1581 TRF Tandem_Repeat 58598 58713 133 + . . scaffold1581 GLEAN mRNA 72693 72730 1 + . ID=CGI_10005312; scaffold1581 TRF Tandem_Repeat 72693 72730 67 + . . scaffold1581 GLEAN mRNA 72850 73589 1 + . ID=CGI_10005312; scaffold1581 TRF Tandem_Repeat 72850 73589 958 + . . scaffold1581 GLEAN mRNA 77501 78355 1 + . ID=CGI_10005312; scaffold1581 TRF Tandem_Repeat 77501 78355 1032 + . . scaffold1581 GLEAN mRNA 88093 88557 0.999064 + . ID=CGI_10005313; scaffold1581 WUBlastX LINE_L2 88093 88557 39 + . . scaffold1581 GLEAN mRNA 103916 103960 0.937847 - . ID=CGI_10005314; scaffold1581 TRF Tandem_Repeat 103916 103960 90 + . . scaffold41628 GLEAN mRNA 35368 35825 0.999676 - . ID=CGI_10005328; scaffold41628 TRF Tandem_Repeat 35368 35825 655 + . . scaffold41628 GLEAN mRNA 35692 35802 0.999676 - . ID=CGI_10005328; scaffold41628 TRF Tandem_Repeat 35692 35802 67 + . . scaffold41628 GLEAN mRNA 39838 40315 0.999676 - . ID=CGI_10005328; scaffold41628 TRF Tandem_Repeat 39838 40315 582 + . . scaffold41628 GLEAN mRNA 41673 42359 0.999676 - . ID=CGI_10005328; scaffold41628 WUBlastX DNA_TcMar-Pogo 41673 42359 262 - . . scaffold41628 GLEAN mRNA 56134 56158 0.987111 + . ID=CGI_10005329; scaffold41628 TRF Tandem_Repeat 56134 56158 50 + . . scaffold41628 GLEAN mRNA 71611 71647 0.510329 + . ID=CGI_10005331; scaffold41628 TRF Tandem_Repeat 71611 71647 74 + . . scaffold41628 GLEAN mRNA 76689 76805 0.510329 + . ID=CGI_10005331; scaffold41628 TRF Tandem_Repeat 76689 76805 105 + . . scaffold41628 GLEAN mRNA 76689 76802 0.510329 + . ID=CGI_10005331; scaffold41628 TRF Tandem_Repeat 76689 76802 115 + . . scaffold41628 GLEAN mRNA 76689 76805 0.510329 + . ID=CGI_10005331; scaffold41628 TRF Tandem_Repeat 76689 76805 106 + . . scaffold139 GLEAN mRNA 99820 99851 0.508065 + . ID=CGI_10005335; scaffold139 TRF Tandem_Repeat 99820 99851 55 + . . scaffold139 GLEAN mRNA 101781 101806 0.508065 + . ID=CGI_10005335; scaffold139 TRF Tandem_Repeat 101781 101806 52 + . . scaffold139 GLEAN mRNA 109044 109084 0.322577 + . ID=CGI_10005336; scaffold139 TRF Tandem_Repeat 109044 109084 82 + . . scaffold139 GLEAN mRNA 109218 109730 0.322577 + . ID=CGI_10005336; scaffold139 TRF Tandem_Repeat 109218 109730 785 + . . scaffold139 GLEAN mRNA 111740 112890 0.322577 + . ID=CGI_10005336; scaffold139 TRF Tandem_Repeat 111740 112890 1089 + . . scaffold139 GLEAN mRNA 111740 112890 0.322577 + . ID=CGI_10005336; scaffold139 TRF Tandem_Repeat 111740 112890 1006 + . . scaffold139 GLEAN mRNA 111740 112890 0.322577 + . ID=CGI_10005336; scaffold139 TRF Tandem_Repeat 111740 112890 1181 + . . scaffold41650 GLEAN mRNA 5029 5076 0.998592 + . ID=CGI_10005337; scaffold41650 TRF Tandem_Repeat 5029 5076 96 + . . scaffold41650 GLEAN mRNA 10857 10916 0.998592 + . ID=CGI_10005337; scaffold41650 TRF Tandem_Repeat 10857 10916 120 + . . scaffold41650 GLEAN mRNA 11762 11865 0.998592 + . ID=CGI_10005337; scaffold41650 TRF Tandem_Repeat 11762 11865 153 + . . scaffold41650 GLEAN mRNA 3844 4833 0.998592 + . ID=CGI_10005337; scaffold41650 WUBlastX LINE_L2 3844 4833 466 - . . scaffold41650 GLEAN mRNA 3940 4992 0.998592 + . ID=CGI_10005337; scaffold41650 WUBlastX LINE_CR1 3940 4992 139 - . . scaffold41650 GLEAN mRNA 4875 5015 0.998592 + . ID=CGI_10005337; scaffold41650 WUBlastX LINE_CR1-L2 4875 5015 68 - . . scaffold41650 GLEAN mRNA 5943 6074 0.998592 + . ID=CGI_10005337; scaffold41650 WUBlastX LINE_L2 5943 6074 35 - . . scaffold41650 GLEAN mRNA 3705 3839 0.998592 + . ID=CGI_10005337; scaffold41650 WUBlastX LINE_I 3705 3839 46 - . . scaffold41650 GLEAN mRNA 23434 23478 0.998592 + . ID=CGI_10005337; scaffold41650 TRF Tandem_Repeat 23434 23478 83 + . . scaffold41650 GLEAN mRNA 30961 30989 0.998592 + . ID=CGI_10005337; scaffold41650 TRF Tandem_Repeat 30961 30989 58 + . . scaffold41650 GLEAN mRNA 82358 82392 0.81078 - . ID=CGI_10005338; scaffold41650 TRF Tandem_Repeat 82358 82392 52 + . . scaffold41650 GLEAN mRNA 106180 106463 0.999974 - . ID=CGI_10005339; scaffold41650 TRF Tandem_Repeat 106180 106463 300 + . . scaffold1424 GLEAN mRNA 53883 53963 0.99939 + . ID=CGI_10005350; scaffold1424 WUBlastX LINE_R1 53883 53963 23 + . . scaffold1424 GLEAN mRNA 53871 54119 0.99939 + . ID=CGI_10005350; scaffold1424 WUBlastX LINE_I 53217 54119 22 + . . scaffold667 GLEAN mRNA 18789 18845 0.999844 - . ID=CGI_10005354; scaffold667 TRF Tandem_Repeat 18789 18845 87 + . . scaffold667 GLEAN mRNA 21448 21476 0.999844 - . ID=CGI_10005354; scaffold667 TRF Tandem_Repeat 21448 21476 58 + . . scaffold667 GLEAN mRNA 18388 18624 0.999844 - . ID=CGI_10005354; scaffold667 WUBlastX LINE_CR1-L2 18388 18624 54 + . . scaffold667 GLEAN mRNA 18430 18693 0.999844 - . ID=CGI_10005354; scaffold667 WUBlastX LINE_CR1-L2 18430 18693 100 + . . scaffold667 GLEAN mRNA 18439 18756 0.999844 - . ID=CGI_10005354; scaffold667 WUBlastX LINE_CR1 18439 18756 44 + . . scaffold1553 GLEAN mRNA 3727 3843 0.937799 + . ID=CGI_10005358; scaffold1553 TRF Tandem_Repeat 3727 3843 95 + . . scaffold1553 GLEAN mRNA 20953 20988 0.937799 + . ID=CGI_10005358; scaffold1553 TRF Tandem_Repeat 20953 20988 72 + . . scaffold1553 GLEAN mRNA 24834 24882 0.937799 + . ID=CGI_10005358; scaffold1553 TRF Tandem_Repeat 24834 24882 98 + . . scaffold1553 GLEAN mRNA 20953 20988 0.997897 - . ID=CGI_10005359; scaffold1553 TRF Tandem_Repeat 20953 20988 72 + . . scaffold1553 GLEAN mRNA 24834 24882 0.997897 - . ID=CGI_10005359; scaffold1553 TRF Tandem_Repeat 24834 24882 98 + . . scaffold1553 GLEAN mRNA 74412 74723 0.759666 - . ID=CGI_10005363; scaffold1553 WUBlastX DNA_IS4EU 74412 74723 51 - . . scaffold1553 GLEAN mRNA 84007 84064 1 + . ID=CGI_10005365; scaffold1553 TRF Tandem_Repeat 84007 84064 55 + . . scaffold484 GLEAN mRNA 104377 104435 1 - . ID=CGI_10005367; scaffold484 TRF Tandem_Repeat 104377 104435 100 + . . scaffold484 GLEAN mRNA 119390 119429 0.70702 + . ID=CGI_10005368; scaffold484 TRF Tandem_Repeat 119390 119429 80 + . . scaffold41666 GLEAN mRNA 6599 6637 0.482167 + . ID=CGI_10005374; scaffold41666 TRF Tandem_Repeat 6599 6637 51 + . . scaffold41666 GLEAN mRNA 11182 11214 0.482167 + . ID=CGI_10005374; scaffold41666 TRF Tandem_Repeat 11182 11214 66 + . . scaffold41666 GLEAN mRNA 11291 11347 0.482167 + . ID=CGI_10005374; scaffold41666 TRF Tandem_Repeat 11291 11347 114 + . . scaffold41666 GLEAN mRNA 39465 39994 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 39465 39994 554 + . . scaffold41666 GLEAN mRNA 39465 40137 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 39465 40137 569 + . . scaffold41666 GLEAN mRNA 39480 40075 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 39480 40075 111 + . . scaffold41666 GLEAN mRNA 43313 43351 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 43313 43351 71 + . . scaffold41666 GLEAN mRNA 45551 45605 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 45551 45605 110 + . . scaffold41666 GLEAN mRNA 49171 49358 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 49171 49358 128 + . . scaffold41666 GLEAN mRNA 49171 49355 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 49171 49355 149 + . . scaffold41666 GLEAN mRNA 49299 49394 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 49299 49394 106 + . . scaffold41666 GLEAN mRNA 49298 49377 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 49298 49377 97 + . . scaffold41666 GLEAN mRNA 49297 49394 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 49297 49394 90 + . . scaffold41666 GLEAN mRNA 49970 50001 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 49970 50001 55 + . . scaffold41666 GLEAN mRNA 50166 50222 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 50166 50222 114 + . . scaffold41666 GLEAN mRNA 50312 50339 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 50312 50339 56 + . . scaffold41666 GLEAN mRNA 51072 51115 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 51072 51115 88 + . . scaffold41666 GLEAN mRNA 51775 51822 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 51775 51822 87 + . . scaffold41666 GLEAN mRNA 54804 54867 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 54804 54867 128 + . . scaffold41666 GLEAN mRNA 55591 55616 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 55591 55616 52 + . . scaffold41666 GLEAN mRNA 59579 59670 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 59579 59670 145 + . . scaffold41666 GLEAN mRNA 63609 63637 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 63609 63637 58 + . . scaffold41666 GLEAN mRNA 63753 63805 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 63753 63805 88 + . . scaffold41666 GLEAN mRNA 64203 64242 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 64203 64242 80 + . . scaffold41666 GLEAN mRNA 67688 67736 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 67688 67736 89 + . . scaffold41666 GLEAN mRNA 68246 68302 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 68246 68302 114 + . . scaffold41666 GLEAN mRNA 68840 68905 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 68840 68905 96 + . . scaffold41666 GLEAN mRNA 78457 78533 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 78457 78533 147 + . . scaffold41666 GLEAN mRNA 82649 82689 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 82649 82689 64 + . . scaffold41666 GLEAN mRNA 89101 89147 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 89101 89147 87 + . . scaffold41666 GLEAN mRNA 106139 106210 0.997433 + . ID=CGI_10005376; scaffold41666 TRF Tandem_Repeat 106139 106210 73 + . . scaffold41666 GLEAN mRNA 106139 106210 0.997433 + . ID=CGI_10005376; scaffold41666 TRF Tandem_Repeat 106139 106210 90 + . . scaffold41666 GLEAN mRNA 114262 114302 0.700617 - . ID=CGI_10005377; scaffold41666 TRF Tandem_Repeat 114262 114302 82 + . . scaffold41666 GLEAN mRNA 115247 115750 0.700617 - . ID=CGI_10005377; scaffold41666 WUBlastX DNA_Harbinger 115247 115750 145 + . . scaffold41652 GLEAN mRNA 5653 6723 0.770849 - . ID=CGI_10005379; scaffold41652 WUBlastX LINE_L1-Tx1 5653 6723 119 + . . scaffold41652 GLEAN mRNA 25541 25576 0.770849 - . ID=CGI_10005379; scaffold41652 TRF Tandem_Repeat 25541 25576 54 + . . scaffold41652 GLEAN mRNA 60714 60783 0.180128 - . ID=CGI_10005382; scaffold41652 TRF Tandem_Repeat 60714 60783 140 + . . scaffold41652 GLEAN mRNA 84210 84872 0.999996 - . ID=CGI_10005384; scaffold41652 TRF Tandem_Repeat 84210 84872 898 + . . scaffold41652 GLEAN mRNA 99080 99152 1 + . ID=CGI_10005386; scaffold41652 TRF Tandem_Repeat 99080 99152 139 + . . scaffold41652 GLEAN mRNA 101324 102348 1 + . ID=CGI_10005386; scaffold41652 TRF Tandem_Repeat 101324 102348 1063 + . . scaffold41656 GLEAN mRNA 2799 2859 1 + . ID=CGI_10005388; scaffold41656 TRF Tandem_Repeat 2799 2859 122 + . . scaffold41656 GLEAN mRNA 31730 31778 0.978494 - . ID=CGI_10005390; scaffold41656 TRF Tandem_Repeat 31730 31778 98 + . . scaffold41656 GLEAN mRNA 99572 99648 1 + . ID=CGI_10005392; scaffold41656 TRF Tandem_Repeat 99572 99648 90 + . . scaffold41656 GLEAN mRNA 118378 118431 0.412686 + . ID=CGI_10005393; scaffold41656 TRF Tandem_Repeat 118378 118431 92 + . . scaffold41660 GLEAN mRNA 984 1030 1 - . ID=CGI_10005395; scaffold41660 TRF Tandem_Repeat 984 1030 94 + . . scaffold41660 GLEAN mRNA 80133 80936 0.999676 + . ID=CGI_10005399; scaffold41660 WUBlastX LINE_RTE-X 80133 80936 180 - . . scaffold41660 GLEAN mRNA 80103 81062 0.999676 + . ID=CGI_10005399; scaffold41660 WUBlastX LINE_RTE-X 80103 81062 161 - . . scaffold41660 GLEAN mRNA 100880 100923 0.645265 - . ID=CGI_10005400; scaffold41660 TRF Tandem_Repeat 100880 100923 61 + . . scaffold41660 GLEAN mRNA 101106 102286 0.645265 - . ID=CGI_10005400; scaffold41660 TRF Tandem_Repeat 101106 102286 1342 + . . scaffold41660 GLEAN mRNA 105264 105397 0.645265 - . ID=CGI_10005400; scaffold41660 TRF Tandem_Repeat 105264 105397 123 + . . scaffold41660 GLEAN mRNA 113124 113543 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 113124 113543 77 - . . scaffold41660 GLEAN mRNA 113199 113663 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1 113199 113663 53 - . . scaffold41660 GLEAN mRNA 109683 109904 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 109683 109904 64 - . . scaffold41660 GLEAN mRNA 109560 109907 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 109560 109907 33 - . . scaffold41660 GLEAN mRNA 109913 111604 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 109913 111604 943 - . . scaffold41660 GLEAN mRNA 113735 114370 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 113735 114370 131 - . . scaffold41660 GLEAN mRNA 113202 113543 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 113202 113543 151 - . . scaffold41660 GLEAN mRNA 113831 114370 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 113831 114370 240 - . . scaffold41660 GLEAN mRNA 114369 114926 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 114369 114926 263 - . . scaffold1745 GLEAN mRNA 8502 8861 0.777131 + . ID=CGI_10005402; scaffold1745 WUBlastX LINE_L1 8502 8861 43 + . . scaffold1745 GLEAN mRNA 22531 22557 0.632224 + . ID=CGI_10005403; scaffold1745 TRF Tandem_Repeat 22531 22557 54 + . . scaffold1745 GLEAN mRNA 28801 28856 0.632224 + . ID=CGI_10005403; scaffold1745 TRF Tandem_Repeat 28801 28856 67 + . . scaffold1745 GLEAN mRNA 28797 28878 0.632224 + . ID=CGI_10005403; scaffold1745 TRF Tandem_Repeat 28797 28878 56 + . . scaffold1745 GLEAN mRNA 36116 36183 0.99601 - . ID=CGI_10005404; scaffold1745 TRF Tandem_Repeat 36116 36183 136 + . . scaffold1745 GLEAN mRNA 38118 38196 0.99601 - . ID=CGI_10005404; scaffold1745 TRF Tandem_Repeat 38118 38196 158 + . . scaffold1745 GLEAN mRNA 44483 44562 0.99601 - . ID=CGI_10005404; scaffold1745 TRF Tandem_Repeat 44483 44562 151 + . . scaffold1745 GLEAN mRNA 45457 45524 0.99601 - . ID=CGI_10005404; scaffold1745 TRF Tandem_Repeat 45457 45524 82 + . . scaffold1745 GLEAN mRNA 34975 35214 0.99601 - . ID=CGI_10005404; scaffold1745 WUBlastX LINE_RTE-X 34975 35214 39 - . . scaffold1745 GLEAN mRNA 79271 79618 0.437746 + . ID=CGI_10005405; scaffold1745 WUBlastX LINE_RTE-X 79271 79618 49 - . . scaffold1745 GLEAN mRNA 79241 79411 0.437746 + . ID=CGI_10005405; scaffold1745 WUBlastX LINE_RTE-X 79241 79411 93 - . . scaffold1745 GLEAN mRNA 79268 79489 0.437746 + . ID=CGI_10005405; scaffold1745 WUBlastX LINE_RTE-X 79268 79489 66 - . . scaffold1745 GLEAN mRNA 90537 90584 0.437746 + . ID=CGI_10005405; scaffold1745 TRF Tandem_Repeat 90537 90584 60 + . . scaffold1745 GLEAN mRNA 113400 113449 0.998783 - . ID=CGI_10005406; scaffold1745 TRF Tandem_Repeat 113400 113449 100 + . . scaffold1745 GLEAN mRNA 118433 118621 0.998783 - . ID=CGI_10005406; scaffold1745 WUBlastX LTR_Ngaro 118433 118621 145 + . . scaffold1745 GLEAN mRNA 118337 118597 0.998783 - . ID=CGI_10005406; scaffold1745 WUBlastX LTR_Ngaro 118337 118597 83 + . . scaffold1745 GLEAN mRNA 118140 118388 0.998783 - . ID=CGI_10005406; scaffold1745 WUBlastX LTR_Ngaro 118140 118388 41 + . . scaffold1745 GLEAN mRNA 118382 118606 0.998783 - . ID=CGI_10005406; scaffold1745 WUBlastX LTR_Ngaro 118382 118606 137 + . . scaffold488 GLEAN mRNA 45248 45541 0.998314 - . ID=CGI_10005407; scaffold488 WUBlastX LINE_L2 45248 45541 160 - . . scaffold488 GLEAN mRNA 45161 45541 0.998314 - . ID=CGI_10005407; scaffold488 WUBlastX LINE_L2 45161 45541 89 - . . scaffold488 GLEAN mRNA 45236 45625 0.998314 - . ID=CGI_10005407; scaffold488 WUBlastX LINE_L2 45236 45625 118 - . . scaffold488 GLEAN mRNA 87887 88090 1 - . ID=CGI_10005409; scaffold488 WUBlastX LTR_Copia 87887 88090 34 - . . scaffold488 GLEAN mRNA 94722 94779 0.99942 + . ID=CGI_10005410; scaffold488 TRF Tandem_Repeat 94722 94779 116 + . . scaffold488 GLEAN mRNA 107956 108007 1 + . ID=CGI_10005412; scaffold488 TRF Tandem_Repeat 107956 108007 54 + . . scaffold488 GLEAN mRNA 107953 108014 1 + . ID=CGI_10005412; scaffold488 TRF Tandem_Repeat 107953 108014 53 + . . scaffold41664 GLEAN mRNA 37939 37990 0.880346 + . ID=CGI_10005414; scaffold41664 TRF Tandem_Repeat 37939 37990 95 + . . scaffold41664 GLEAN mRNA 38370 38816 0.880346 + . ID=CGI_10005414; scaffold41664 WUBlastX DNA_IS4EU 38370 38816 60 + . . scaffold41664 GLEAN mRNA 78131 78341 0.233482 + . ID=CGI_10005416; scaffold41664 TRF Tandem_Repeat 78131 78341 251 + . . scaffold41664 GLEAN mRNA 85750 85977 0.233482 + . ID=CGI_10005416; scaffold41664 WUBlastX LINE_Penelope 85750 85977 60 + . . scaffold41664 GLEAN mRNA 87712 87939 0.233482 + . ID=CGI_10005416; scaffold41664 WUBlastX LINE_Penelope 87712 87939 60 + . . scaffold41664 GLEAN mRNA 124575 124604 0.999999 + . ID=CGI_10005419; scaffold41664 TRF Tandem_Repeat 124575 124604 53 + . . scaffold1256 GLEAN mRNA 7492 7864 1 + . ID=CGI_10005420; scaffold1256 TRF Tandem_Repeat 7492 7864 278 + . . scaffold1256 GLEAN mRNA 7492 7864 1 + . ID=CGI_10005420; scaffold1256 TRF Tandem_Repeat 7492 7864 307 + . . scaffold1256 GLEAN mRNA 72237 72286 0.999732 - . ID=CGI_10005426; scaffold1256 TRF Tandem_Repeat 72237 72286 84 + . . scaffold1256 GLEAN mRNA 78656 79456 0.81415 + . ID=CGI_10005427; scaffold1256 WUBlastX LTR_Gypsy 78656 79456 245 + . . scaffold1256 GLEAN mRNA 93414 93573 0.997922 + . ID=CGI_10005430; scaffold1256 TRF Tandem_Repeat 93414 93573 148 + . . scaffold1256 GLEAN mRNA 94284 94578 0.997922 + . ID=CGI_10005430; scaffold1256 TRF Tandem_Repeat 94284 94578 274 + . . scaffold1256 GLEAN mRNA 90546 90797 0.997922 + . ID=CGI_10005430; scaffold1256 WUBlastX LTR_Ngaro 90546 90797 68 + . . scaffold1256 GLEAN mRNA 91579 91641 0.997922 + . ID=CGI_10005430; scaffold1256 WUBlastX LTR_Ngaro 91579 91641 26 + . . scaffold1256 GLEAN mRNA 90459 90830 0.997922 + . ID=CGI_10005430; scaffold1256 WUBlastX LTR_Ngaro 90459 90830 43 + . . scaffold1256 GLEAN mRNA 91626 91703 0.997922 + . ID=CGI_10005430; scaffold1256 WUBlastX LTR_Ngaro 91626 91703 31 + . . scaffold1256 GLEAN mRNA 112376 112409 0.999777 + . ID=CGI_10005431; scaffold1256 TRF Tandem_Repeat 112376 112409 68 + . . scaffold1256 GLEAN mRNA 112583 112635 0.999777 + . ID=CGI_10005431; scaffold1256 TRF Tandem_Repeat 112583 112635 79 + . . scaffold41684 GLEAN mRNA 34158 34182 0.93781 - . ID=CGI_10005434; scaffold41684 TRF Tandem_Repeat 34158 34182 50 + . . scaffold41684 GLEAN mRNA 47332 48124 0.93781 - . ID=CGI_10005434; scaffold41684 TRF Tandem_Repeat 47332 48124 1365 + . . scaffold41684 GLEAN mRNA 43158 43505 0.93781 - . ID=CGI_10005434; scaffold41684 WUBlastX LTR_Ngaro 43158 43505 143 + . . scaffold41684 GLEAN mRNA 42784 43164 0.93781 - . ID=CGI_10005434; scaffold41684 WUBlastX LTR_Ngaro 42784 43164 163 + . . scaffold41684 GLEAN mRNA 43155 43442 0.93781 - . ID=CGI_10005434; scaffold41684 WUBlastX LTR_Ngaro 43155 43442 176 + . . scaffold41684 GLEAN mRNA 43197 43571 0.93781 - . ID=CGI_10005434; scaffold41684 WUBlastX LTR_Ngaro 43197 43571 82 + . . scaffold41684 GLEAN mRNA 42556 43146 0.93781 - . ID=CGI_10005434; scaffold41684 WUBlastX LTR_Ngaro 42556 43146 54 + . . scaffold41684 GLEAN mRNA 42120 42767 0.93781 - . ID=CGI_10005434; scaffold41684 WUBlastX LTR_Ngaro 42120 42767 30 + . . scaffold1639 GLEAN mRNA 30174 30209 0.863535 + . ID=CGI_10005437; scaffold1639 TRF Tandem_Repeat 30174 30209 54 + . . scaffold1639 GLEAN mRNA 37584 37826 0.863535 + . ID=CGI_10005437; scaffold1639 WUBlastX DNA_TcMar-Tc1 37584 37826 120 + . . scaffold1639 GLEAN mRNA 35354 35710 0.863535 + . ID=CGI_10005437; scaffold1639 WUBlastX DNA_Harbinger 35354 35710 103 + . . scaffold1639 GLEAN mRNA 34573 35022 0.863535 + . ID=CGI_10005437; scaffold1639 WUBlastX DNA_Harbinger 34573 35022 60 + . . scaffold1639 GLEAN mRNA 34901 35188 0.863535 + . ID=CGI_10005437; scaffold1639 WUBlastX DNA_Harbinger 34901 35188 54 + . . scaffold1639 GLEAN mRNA 37452 37826 0.863535 + . ID=CGI_10005437; scaffold1639 WUBlastX DNA_TcMar-Tc1 37452 37826 106 + . . scaffold1639 GLEAN mRNA 82659 83189 1 - . ID=CGI_10005439; scaffold1639 WUBlastX DNA_Kolobok-IS4 82659 83189 42 - . . scaffold1639 GLEAN mRNA 83460 83780 1 - . ID=CGI_10005439; scaffold1639 WUBlastX DNA_IS4EU 83460 83885 86 - . . scaffold1639 GLEAN mRNA 83241 83354 1 - . ID=CGI_10005439; scaffold1639 WUBlastX DNA_IS4EU 83241 83354 38 - . . scaffold1639 GLEAN mRNA 83815 83885 1 - . ID=CGI_10005440; scaffold1639 WUBlastX DNA_IS4EU 83460 83885 86 - . . scaffold1639 GLEAN mRNA 126207 126256 1 - . ID=CGI_10005443; scaffold1639 TRF Tandem_Repeat 126207 126256 55 + . . scaffold1639 GLEAN mRNA 123984 124109 1 - . ID=CGI_10005443; scaffold1639 WUBlastX DNA_Maverick 123984 124109 38 - . . scaffold1386 GLEAN mRNA 42688 42822 0.877137 + . ID=CGI_10005449; scaffold1386 TRF Tandem_Repeat 42688 42822 225 + . . scaffold1386 GLEAN mRNA 45247 45298 0.877137 + . ID=CGI_10005449; scaffold1386 TRF Tandem_Repeat 45247 45298 104 + . . scaffold1419 GLEAN mRNA 20699 20755 0.812498 - . ID=CGI_10005452; scaffold1419 TRF Tandem_Repeat 20699 20755 114 + . . scaffold1419 GLEAN mRNA 27164 27231 0.812498 - . ID=CGI_10005452; scaffold1419 TRF Tandem_Repeat 27164 27231 82 + . . scaffold1419 GLEAN mRNA 27161 27230 0.812498 - . ID=CGI_10005452; scaffold1419 TRF Tandem_Repeat 27161 27230 131 + . . scaffold1419 GLEAN mRNA 36932 37737 0.812498 - . ID=CGI_10005452; scaffold1419 TRF Tandem_Repeat 36932 37737 731 + . . scaffold1419 GLEAN mRNA 37082 37797 0.812498 - . ID=CGI_10005452; scaffold1419 TRF Tandem_Repeat 37082 37797 512 + . . scaffold1419 GLEAN mRNA 37610 37790 0.812498 - . ID=CGI_10005452; scaffold1419 TRF Tandem_Repeat 37610 37790 143 + . . scaffold1419 GLEAN mRNA 49695 50354 0.812498 - . ID=CGI_10005452; scaffold1419 TRF Tandem_Repeat 49695 50354 581 + . . scaffold1419 GLEAN mRNA 49689 50358 0.812498 - . ID=CGI_10005452; scaffold1419 TRF Tandem_Repeat 49689 50358 695 + . . scaffold1419 GLEAN mRNA 49772 50358 0.812498 - . ID=CGI_10005452; scaffold1419 TRF Tandem_Repeat 49772 50358 661 + . . scaffold1419 GLEAN mRNA 69198 69243 0.812498 - . ID=CGI_10005452; scaffold1419 TRF Tandem_Repeat 69198 69243 65 + . . scaffold1419 GLEAN mRNA 69244 69278 0.812498 - . ID=CGI_10005452; scaffold1419 TRF Tandem_Repeat 69244 69278 70 + . . scaffold1419 GLEAN mRNA 77074 77216 0.812498 - . ID=CGI_10005452; scaffold1419 TRF Tandem_Repeat 77074 77216 94 + . . scaffold1419 GLEAN mRNA 80925 81260 0.812498 - . ID=CGI_10005452; scaffold1419 WUBlastX DNA_TcMar-Marin 80925 81260 83 + . . scaffold1419 GLEAN mRNA 86002 86048 0.812498 - . ID=CGI_10005452; scaffold1419 TRF Tandem_Repeat 86002 86048 51 + . . scaffold1419 GLEAN mRNA 107043 107072 0.492606 - . ID=CGI_10005453; scaffold1419 TRF Tandem_Repeat 107043 107072 60 + . . scaffold1371 GLEAN mRNA 28977 29045 0.999999 + . ID=CGI_10005455; scaffold1371 TRF Tandem_Repeat 28977 29045 79 + . . scaffold1371 GLEAN mRNA 29688 29923 0.999999 + . ID=CGI_10005455; scaffold1371 TRF Tandem_Repeat 29688 29923 429 + . . scaffold1371 GLEAN mRNA 34544 34650 0.999999 + . ID=CGI_10005456; scaffold1371 TRF Tandem_Repeat 34544 34650 178 + . . scaffold1371 GLEAN mRNA 34966 35578 0.999999 + . ID=CGI_10005456; scaffold1371 TRF Tandem_Repeat 34966 35578 626 + . . scaffold1371 GLEAN mRNA 45661 45938 1 + . ID=CGI_10005457; scaffold1371 TRF Tandem_Repeat 45661 45938 502 + . . scaffold41722 GLEAN mRNA 41876 42014 0.732146 + . ID=CGI_10005458; scaffold41722 TRF Tandem_Repeat 41876 42014 269 + . . scaffold41722 GLEAN mRNA 42142 42338 0.732146 + . ID=CGI_10005458; scaffold41722 TRF Tandem_Repeat 42142 42338 349 + . . scaffold41722 GLEAN mRNA 32006 32828 0.732146 + . ID=CGI_10005458; scaffold41722 TRF Tandem_Repeat 32006 32828 1131 + . . scaffold41722 GLEAN mRNA 32006 32925 0.732146 + . ID=CGI_10005458; scaffold41722 TRF Tandem_Repeat 32006 32925 1081 + . . scaffold41722 GLEAN mRNA 52310 52466 1 + . ID=CGI_10005459; scaffold41722 TRF Tandem_Repeat 52310 52466 188 + . . scaffold41722 GLEAN mRNA 77896 78127 0.990732 + . ID=CGI_10005460; scaffold41722 TRF Tandem_Repeat 77896 78127 455 + . . scaffold41722 GLEAN mRNA 99687 100068 0.98826 + . ID=CGI_10005461; scaffold41722 TRF Tandem_Repeat 99687 100068 595 + . . scaffold41722 GLEAN mRNA 104251 104333 0.999999 - . ID=CGI_10005462; scaffold41722 TRF Tandem_Repeat 104251 104333 58 + . . scaffold41722 GLEAN mRNA 104265 104349 0.999999 - . ID=CGI_10005462; scaffold41722 TRF Tandem_Repeat 104265 104349 65 + . . scaffold41722 GLEAN mRNA 104336 104538 0.999999 - . ID=CGI_10005462; scaffold41722 TRF Tandem_Repeat 104336 104538 214 + . . scaffold41722 GLEAN mRNA 110572 110791 0.999673 + . ID=CGI_10005463; scaffold41722 TRF Tandem_Repeat 110572 110791 129 + . . scaffold41722 GLEAN mRNA 111144 111326 0.999673 + . ID=CGI_10005463; scaffold41722 TRF Tandem_Repeat 111144 111326 223 + . . scaffold41722 GLEAN mRNA 111302 111589 0.999673 + . ID=CGI_10005463; scaffold41722 TRF Tandem_Repeat 111302 111589 344 + . . scaffold41722 GLEAN mRNA 111302 111589 0.999673 + . ID=CGI_10005463; scaffold41722 TRF Tandem_Repeat 111302 111589 346 + . . scaffold41722 GLEAN mRNA 115129 115381 0.999673 + . ID=CGI_10005463; scaffold41722 TRF Tandem_Repeat 115129 115381 310 + . . scaffold41722 GLEAN mRNA 114581 115091 0.999673 + . ID=CGI_10005463; scaffold41722 TRF Tandem_Repeat 114581 115091 568 + . . scaffold41722 GLEAN mRNA 114581 115384 0.999673 + . ID=CGI_10005463; scaffold41722 TRF Tandem_Repeat 114581 115384 735 + . . scaffold1052 GLEAN mRNA 3776 3841 0.980203 - . ID=CGI_10005467; scaffold1052 TRF Tandem_Repeat 3776 3841 107 + . . scaffold1052 GLEAN mRNA 3779 3840 0.980203 - . ID=CGI_10005467; scaffold1052 TRF Tandem_Repeat 3779 3840 63 + . . scaffold1052 GLEAN mRNA 3776 3834 0.980203 - . ID=CGI_10005467; scaffold1052 TRF Tandem_Repeat 3776 3834 82 + . . scaffold1052 GLEAN mRNA 35731 37764 0.980203 - . ID=CGI_10005467; scaffold1052 WUBlastX LTR_DIRS 35731 37764 1220 - . . scaffold1052 GLEAN mRNA 37764 38465 0.980203 - . ID=CGI_10005467; scaffold1052 WUBlastX LTR_DIRS 37764 38465 182 - . . scaffold1052 GLEAN mRNA 34967 35851 0.980203 - . ID=CGI_10005467; scaffold1052 WUBlastX LTR_DIRS 34967 35851 388 - . . scaffold1052 GLEAN mRNA 47243 47288 0.982141 - . ID=CGI_10005468; scaffold1052 TRF Tandem_Repeat 47243 47288 53 + . . scaffold1052 GLEAN mRNA 51503 51544 0.982141 - . ID=CGI_10005468; scaffold1052 TRF Tandem_Repeat 51503 51544 57 + . . scaffold1052 GLEAN mRNA 75979 77055 0.988141 - . ID=CGI_10005470; scaffold1052 WUBlastX LINE_RTE-X 75979 77055 367 - . . scaffold1052 GLEAN mRNA 74918 75502 0.988141 - . ID=CGI_10005470; scaffold1052 WUBlastX LINE_L2 74918 75502 53 - . . scaffold1052 GLEAN mRNA 78031 79116 0.988141 - . ID=CGI_10005470; scaffold1052 WUBlastX LINE_RTE-X 78031 79116 373 - . . scaffold1052 GLEAN mRNA 75143 75502 0.988141 - . ID=CGI_10005470; scaffold1052 WUBlastX LINE_L2 75143 75502 109 - . . scaffold1052 GLEAN mRNA 79154 79276 0.988141 - . ID=CGI_10005470; scaffold1052 WUBlastX LINE_L2 79154 79276 27 - . . scaffold1052 GLEAN mRNA 75044 75394 0.988141 - . ID=CGI_10005470; scaffold1052 WUBlastX LINE_L2 75044 75394 87 - . . scaffold1052 GLEAN mRNA 79658 79725 0.988141 - . ID=CGI_10005470; scaffold1052 WUBlastX LINE_L2 79658 80020 60 - . . scaffold1052 GLEAN mRNA 86404 86472 1 + . ID=CGI_10005471; scaffold1052 TRF Tandem_Repeat 86404 86472 52 + . . scaffold1052 GLEAN mRNA 86716 86769 1 + . ID=CGI_10005471; scaffold1052 TRF Tandem_Repeat 86716 86769 74 + . . scaffold1052 GLEAN mRNA 86715 86772 1 + . ID=CGI_10005471; scaffold1052 TRF Tandem_Repeat 86715 86772 91 + . . scaffold1052 GLEAN mRNA 89725 90410 1 + . ID=CGI_10005471; scaffold1052 TRF Tandem_Repeat 89725 90410 1051 + . . scaffold1052 GLEAN mRNA 110982 111687 0.841132 + . ID=CGI_10005472; scaffold1052 TRF Tandem_Repeat 110982 111687 1047 + . . scaffold41732 GLEAN mRNA 16726 16754 0.479705 + . ID=CGI_10005477; scaffold41732 TRF Tandem_Repeat 16726 16754 58 + . . scaffold41732 GLEAN mRNA 46045 46136 0.444801 - . ID=CGI_10005478; scaffold41732 TRF Tandem_Repeat 46045 46136 76 + . . scaffold41732 GLEAN mRNA 46078 46238 0.444801 - . ID=CGI_10005478; scaffold41732 TRF Tandem_Repeat 46078 46238 90 + . . scaffold41732 GLEAN mRNA 46041 46241 0.444801 - . ID=CGI_10005478; scaffold41732 TRF Tandem_Repeat 46041 46241 136 + . . scaffold41732 GLEAN mRNA 47628 47800 0.444801 - . ID=CGI_10005478; scaffold41732 TRF Tandem_Repeat 47628 47800 197 + . . scaffold41732 GLEAN mRNA 57906 58424 0.444801 - . ID=CGI_10005478; scaffold41732 WUBlastX LINE_RTE-X 57906 58424 303 - . . scaffold41732 GLEAN mRNA 59573 59674 0.444801 - . ID=CGI_10005478; scaffold41732 WUBlastX LINE_L1-Tx1 59573 59674 22 - . . scaffold41732 GLEAN mRNA 57329 57901 0.444801 - . ID=CGI_10005478; scaffold41732 WUBlastX LINE_RTE-X 57329 57901 169 - . . scaffold41732 GLEAN mRNA 58448 58996 0.444801 - . ID=CGI_10005478; scaffold41732 WUBlastX LINE_RTE-X 58448 58996 350 - . . scaffold41732 GLEAN mRNA 59588 59659 0.444801 - . ID=CGI_10005478; scaffold41732 WUBlastX LINE_Rex-Babar 59588 59659 26 - . . scaffold41732 GLEAN mRNA 58448 59113 0.444801 - . ID=CGI_10005478; scaffold41732 WUBlastX LINE_L2 58448 59113 56 - . . scaffold41732 GLEAN mRNA 87885 88159 0.562436 + . ID=CGI_10005483; scaffold41732 TRF Tandem_Repeat 87885 88159 246 + . . scaffold41732 GLEAN mRNA 87885 88159 0.562436 + . ID=CGI_10005483; scaffold41732 TRF Tandem_Repeat 87885 88159 361 + . . scaffold41732 GLEAN mRNA 100782 100841 0.999368 - . ID=CGI_10005484; scaffold41732 TRF Tandem_Repeat 100782 100841 120 + . . scaffold1878 GLEAN mRNA 78537 78582 0.544852 - . ID=CGI_10005491; scaffold1878 TRF Tandem_Repeat 78537 78582 92 + . . scaffold1878 GLEAN mRNA 104401 104452 0.654516 - . ID=CGI_10005493; scaffold1878 TRF Tandem_Repeat 104401 104452 104 + . . scaffold1878 GLEAN mRNA 111194 111245 0.732797 + . ID=CGI_10005494; scaffold1878 TRF Tandem_Repeat 111194 111245 104 + . . scaffold1259 GLEAN mRNA 10045 10205 0.723207 - . ID=CGI_10005496; scaffold1259 TRF Tandem_Repeat 10045 10205 159 + . . scaffold1259 GLEAN mRNA 12781 13083 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX LINE_CR1-L2 12781 13083 130 + . . scaffold1259 GLEAN mRNA 15516 15707 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX DNA_MuDR 15516 15707 44 - . . scaffold1259 GLEAN mRNA 15722 16036 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX DNA_MuDR 15722 16036 39 - . . scaffold1259 GLEAN mRNA 12676 13083 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX LINE_L2 12676 13083 125 + . . scaffold1259 GLEAN mRNA 13109 13300 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX LINE_L1 13109 13300 77 + . . scaffold1259 GLEAN mRNA 15516 15635 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX DNA 15516 15635 50 - . . scaffold1259 GLEAN mRNA 15474 15635 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX DNA_MuDR 15474 15635 42 - . . scaffold1259 GLEAN mRNA 15833 16078 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX DNA_MuDR 15833 16078 55 - . . scaffold1259 GLEAN mRNA 12574 13065 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX LINE_L2 12574 13065 91 + . . scaffold1259 GLEAN mRNA 13010 13333 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX LINE_L2 13010 13333 46 + . . scaffold1259 GLEAN mRNA 14808 15254 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX DNA_MuDR 14808 15254 62 - . . scaffold1259 GLEAN mRNA 15821 16027 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX DNA_MuDR 15821 16027 60 - . . scaffold1259 GLEAN mRNA 19306 19518 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX LINE_L1 19306 19518 133 - . . scaffold1259 GLEAN mRNA 17932 18102 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX LINE_CR1 17932 18102 40 - . . scaffold1259 GLEAN mRNA 19306 19485 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX LINE_L1-Tx1 19306 19485 147 - . . scaffold1259 GLEAN mRNA 19306 19641 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX LINE_L1 19306 19641 100 - . . scaffold1259 GLEAN mRNA 16589 16795 0.723207 - . ID=CGI_10005496; scaffold1259 WUBlastX DNA_MuDR 16589 16795 22 - . . scaffold1259 GLEAN mRNA 28592 28688 0.737922 - . ID=CGI_10005497; scaffold1259 TRF Tandem_Repeat 28592 28688 94 + . . scaffold1259 GLEAN mRNA 60350 60380 0.999878 + . ID=CGI_10005498; scaffold1259 TRF Tandem_Repeat 60350 60380 53 + . . scaffold1259 GLEAN mRNA 60447 60475 0.999878 + . ID=CGI_10005498; scaffold1259 TRF Tandem_Repeat 60447 60475 58 + . . scaffold41700 GLEAN mRNA 63979 64018 0.99493 + . ID=CGI_10005503; scaffold41700 WUBlastX LTR_Gypsy 63979 64068 22 + . . scaffold41700 GLEAN mRNA 63200 63949 0.99493 + . ID=CGI_10005503; scaffold41700 WUBlastX LTR_DIRS 63200 63949 279 + . . scaffold41700 GLEAN mRNA 111010 111399 0.6496 + . ID=CGI_10005504; scaffold41700 WUBlastX LINE_CR1 110101 111399 992 + . . scaffold1590 GLEAN mRNA 121787 122014 0.611115 - . ID=CGI_10005511; scaffold1590 WUBlastX LINE_Penelope 121787 122014 73 + . . scaffold442 GLEAN mRNA 9107 9150 0.728396 - . ID=CGI_10005512; scaffold442 TRF Tandem_Repeat 9107 9150 88 + . . scaffold442 GLEAN mRNA 79786 80058 0.999397 + . ID=CGI_10005515; scaffold442 WUBlastX LINE_CR1-L2 79702 80058 109 + . . scaffold442 GLEAN mRNA 79786 80046 0.999397 + . ID=CGI_10005515; scaffold442 WUBlastX LINE_L2 79564 80046 78 + . . scaffold389 GLEAN mRNA 86193 86249 0.999797 - . ID=CGI_10005521; scaffold389 TRF Tandem_Repeat 86193 86249 114 + . . scaffold389 GLEAN mRNA 86275 86300 0.999797 - . ID=CGI_10005521; scaffold389 TRF Tandem_Repeat 86275 86300 52 + . . scaffold389 GLEAN mRNA 102692 102980 1 - . ID=CGI_10005522; scaffold389 TRF Tandem_Repeat 102692 102980 533 + . . scaffold389 GLEAN mRNA 123697 123746 0.803007 - . ID=CGI_10005523; scaffold389 TRF Tandem_Repeat 123697 123746 100 + . . scaffold41730 GLEAN mRNA 7130 7448 0.969076 + . ID=CGI_10005525; scaffold41730 TRF Tandem_Repeat 7130 7448 446 + . . scaffold41730 GLEAN mRNA 8789 8879 0.969076 + . ID=CGI_10005525; scaffold41730 TRF Tandem_Repeat 8789 8879 78 + . . scaffold41730 GLEAN mRNA 8741 8879 0.969076 + . ID=CGI_10005525; scaffold41730 TRF Tandem_Repeat 8741 8879 100 + . . scaffold41730 GLEAN mRNA 10962 10993 0.969076 + . ID=CGI_10005525; scaffold41730 TRF Tandem_Repeat 10962 10993 50 + . . scaffold41730 GLEAN mRNA 89490 89535 0.510974 - . ID=CGI_10005529; scaffold41730 TRF Tandem_Repeat 89490 89535 83 + . . scaffold41730 GLEAN mRNA 91028 91708 0.510974 - . ID=CGI_10005529; scaffold41730 TRF Tandem_Repeat 91028 91708 724 + . . scaffold41730 GLEAN mRNA 95720 95756 0.510974 - . ID=CGI_10005529; scaffold41730 TRF Tandem_Repeat 95720 95756 74 + . . scaffold41730 GLEAN mRNA 103402 103468 0.510974 - . ID=CGI_10005529; scaffold41730 TRF Tandem_Repeat 103402 103468 134 + . . scaffold41730 GLEAN mRNA 104526 104550 0.999496 - . ID=CGI_10005530; scaffold41730 TRF Tandem_Repeat 104526 104550 50 + . . scaffold41730 GLEAN mRNA 104186 104311 0.999496 - . ID=CGI_10005530; scaffold41730 WUBlastX LINE_L2 104186 104311 27 - . . scaffold41730 GLEAN mRNA 104283 104522 0.999496 - . ID=CGI_10005530; scaffold41730 WUBlastX LINE_L2 104283 104522 36 - . . scaffold41730 GLEAN mRNA 120692 121489 0.999676 + . ID=CGI_10005531; scaffold41730 TRF Tandem_Repeat 120692 121489 1274 + . . scaffold41730 GLEAN mRNA 115227 115748 0.999676 + . ID=CGI_10005531; scaffold41730 WUBlastX DNA_Zator 115227 115748 72 - . . scaffold585 GLEAN mRNA 2734 2765 0.999618 + . ID=CGI_10005534; scaffold585 TRF Tandem_Repeat 2734 2765 64 + . . scaffold585 GLEAN mRNA 37138 37923 1 - . ID=CGI_10005536; scaffold585 TRF Tandem_Repeat 37138 37923 1136 + . . scaffold585 GLEAN mRNA 43235 43570 1 - . ID=CGI_10005536; scaffold585 TRF Tandem_Repeat 43235 43570 451 + . . scaffold585 GLEAN mRNA 84648 85414 0.575106 - . ID=CGI_10005540; scaffold585 TRF Tandem_Repeat 84648 85414 1264 + . . scaffold585 GLEAN mRNA 106932 107093 0.999351 - . ID=CGI_10005541; scaffold585 WUBlastX LINE_RTE-BovB 106932 107093 106 + . . scaffold585 GLEAN mRNA 106920 107138 0.999351 - . ID=CGI_10005541; scaffold585 WUBlastX LINE_RTE-RTE 106920 107138 91 + . . scaffold585 GLEAN mRNA 106902 107078 0.999351 - . ID=CGI_10005541; scaffold585 WUBlastX LINE_RTE-BovB 106902 107078 101 + . . scaffold585 GLEAN mRNA 106833 107093 0.999351 - . ID=CGI_10005541; scaffold585 WUBlastX LINE_RTE-BovB 106833 107093 77 + . . scaffold585 GLEAN mRNA 125140 125401 0.510732 + . ID=CGI_10005542; scaffold585 TRF Tandem_Repeat 125140 125401 362 + . . scaffold585 GLEAN mRNA 125140 125401 1 - . ID=CGI_10005544; scaffold585 TRF Tandem_Repeat 125140 125401 362 + . . scaffold585 GLEAN mRNA 127755 128516 1 - . ID=CGI_10005544; scaffold585 WUBlastX LINE_RTE-BovB 127755 128516 333 + . . scaffold585 GLEAN mRNA 127806 128669 1 - . ID=CGI_10005544; scaffold585 WUBlastX LINE_RTE-BovB 127806 128669 59 + . . scaffold268 GLEAN mRNA 18703 18839 0.910751 - . ID=CGI_10005546; scaffold268 TRF Tandem_Repeat 18703 18839 140 + . . scaffold268 GLEAN mRNA 19496 19688 0.910751 - . ID=CGI_10005546; scaffold268 TRF Tandem_Repeat 19496 19688 194 + . . scaffold268 GLEAN mRNA 20539 20799 0.910751 - . ID=CGI_10005546; scaffold268 TRF Tandem_Repeat 20539 20799 450 + . . scaffold533 GLEAN mRNA 82816 84284 0.998409 - . ID=CGI_10005555; scaffold533 TRF Tandem_Repeat 82816 84284 1806 + . . scaffold533 GLEAN mRNA 84280 84367 0.998409 - . ID=CGI_10005555; scaffold533 TRF Tandem_Repeat 84280 84367 59 + . . scaffold533 GLEAN mRNA 84684 85024 0.998409 - . ID=CGI_10005555; scaffold533 TRF Tandem_Repeat 84684 85024 371 + . . scaffold533 GLEAN mRNA 85020 85107 0.998409 - . ID=CGI_10005555; scaffold533 TRF Tandem_Repeat 85020 85107 59 + . . scaffold533 GLEAN mRNA 86154 86886 0.998409 - . ID=CGI_10005555; scaffold533 TRF Tandem_Repeat 86154 86886 851 + . . scaffold533 GLEAN mRNA 95659 95833 0.998409 - . ID=CGI_10005555; scaffold533 TRF Tandem_Repeat 95659 95833 350 + . . scaffold533 GLEAN mRNA 98043 98252 0.998409 - . ID=CGI_10005555; scaffold533 WUBlastX LINE_L1-Tx1 98043 98252 55 - . . scaffold533 GLEAN mRNA 91309 91344 0.998409 - . ID=CGI_10005555; scaffold533 WUBlastX LINE_L1 91309 91344 20 + . . scaffold533 GLEAN mRNA 92328 94181 0.998409 - . ID=CGI_10005555; scaffold533 WUBlastX LINE_L2 92328 94181 1207 + . . scaffold533 GLEAN mRNA 96089 96688 0.998409 - . ID=CGI_10005555; scaffold533 WUBlastX LINE_CR1-L2 96089 96688 201 + . . scaffold533 GLEAN mRNA 95960 96691 0.998409 - . ID=CGI_10005555; scaffold533 WUBlastX LINE_L2 95960 96691 94 + . . scaffold533 GLEAN mRNA 92187 92999 0.998409 - . ID=CGI_10005555; scaffold533 WUBlastX LINE_DRE 92187 92999 64 + . . scaffold533 GLEAN mRNA 96194 97054 0.998409 - . ID=CGI_10005555; scaffold533 WUBlastX LINE_L2 96194 97054 449 + . . scaffold533 GLEAN mRNA 98254 98535 0.998409 - . ID=CGI_10005555; scaffold533 WUBlastX LINE_L1-Tx1 98254 98535 32 - . . scaffold533 GLEAN mRNA 98269 98457 0.998409 - . ID=CGI_10005555; scaffold533 WUBlastX LINE_L1 98269 98457 67 - . . scaffold533 GLEAN mRNA 98266 98493 0.998409 - . ID=CGI_10005555; scaffold533 WUBlastX LINE_L1-Tx1 98266 98493 44 - . . scaffold533 GLEAN mRNA 116784 117079 0.411141 + . ID=CGI_10005556; scaffold533 TRF Tandem_Repeat 116784 117079 325 + . . scaffold533 GLEAN mRNA 128084 128167 0.411141 + . ID=CGI_10005556; scaffold533 TRF Tandem_Repeat 128084 128167 159 + . . scaffold41754 GLEAN mRNA 20617 20683 0.481256 - . ID=CGI_10005557; scaffold41754 TRF Tandem_Repeat 20617 20683 62 + . . scaffold41754 GLEAN mRNA 45894 45925 0.481256 - . ID=CGI_10005557; scaffold41754 TRF Tandem_Repeat 45894 45925 64 + . . scaffold41754 GLEAN mRNA 70049 70134 0.481256 - . ID=CGI_10005557; scaffold41754 TRF Tandem_Repeat 70049 70134 129 + . . scaffold41754 GLEAN mRNA 88147 88206 0.84848 - . ID=CGI_10005558; scaffold41754 TRF Tandem_Repeat 88147 88206 93 + . . scaffold41754 GLEAN mRNA 88595 88744 0.84848 - . ID=CGI_10005558; scaffold41754 WUBlastX LINE_RTE-X 88595 88744 37 + . . scaffold41754 GLEAN mRNA 88815 89123 0.84848 - . ID=CGI_10005558; scaffold41754 WUBlastX LINE_RTE-X 88815 89123 67 + . . scaffold41754 GLEAN mRNA 89090 89308 0.84848 - . ID=CGI_10005558; scaffold41754 WUBlastX LINE_RTE-X 89090 89308 30 + . . scaffold41754 GLEAN mRNA 88595 88810 0.84848 - . ID=CGI_10005558; scaffold41754 WUBlastX LINE_RTE-X 88595 88810 29 + . . scaffold41754 GLEAN mRNA 120777 120839 0.999929 - . ID=CGI_10005563; scaffold41754 TRF Tandem_Repeat 120777 120839 119 + . . scaffold278 GLEAN mRNA 43006 43285 1 - . ID=CGI_10005567; scaffold278 TRF Tandem_Repeat 43006 43285 377 + . . scaffold278 GLEAN mRNA 44228 44907 1 - . ID=CGI_10005567; scaffold278 TRF Tandem_Repeat 44228 44907 603 + . . scaffold278 GLEAN mRNA 44234 44907 1 - . ID=CGI_10005567; scaffold278 TRF Tandem_Repeat 44234 44907 573 + . . scaffold278 GLEAN mRNA 62589 62978 0.99967 - . ID=CGI_10005569; scaffold278 TRF Tandem_Repeat 62589 62978 512 + . . scaffold278 GLEAN mRNA 73592 75436 0.375299 + . ID=CGI_10005570; scaffold278 TRF Tandem_Repeat 73592 75436 1198 + . . scaffold278 GLEAN mRNA 76047 76194 0.375299 + . ID=CGI_10005570; scaffold278 TRF Tandem_Repeat 76047 76194 215 + . . scaffold278 GLEAN mRNA 80802 80939 0.375299 + . ID=CGI_10005570; scaffold278 TRF Tandem_Repeat 80802 80939 249 + . . scaffold278 GLEAN mRNA 84102 84130 0.375299 + . ID=CGI_10005570; scaffold278 TRF Tandem_Repeat 84102 84130 58 + . . scaffold278 GLEAN mRNA 96145 96240 0.92442 - . ID=CGI_10005571; scaffold278 TRF Tandem_Repeat 96145 96240 74 + . . scaffold278 GLEAN mRNA 121172 121264 0.911812 - . ID=CGI_10005572; scaffold278 TRF Tandem_Repeat 121172 121264 109 + . . scaffold1708 GLEAN mRNA 6969 8450 0.777526 + . ID=CGI_10005574; scaffold1708 WUBlastX LINE_CR1-L2 6969 8450 258 - . . scaffold1708 GLEAN mRNA 6895 6993 0.777526 + . ID=CGI_10005574; scaffold1708 WUBlastX LINE_L2 6895 6993 47 - . . scaffold1708 GLEAN mRNA 8613 8837 0.777526 + . ID=CGI_10005574; scaffold1708 WUBlastX LINE_L2 8613 8837 70 - . . scaffold1708 GLEAN mRNA 6990 8234 0.777526 + . ID=CGI_10005574; scaffold1708 WUBlastX LINE_L2 6990 8234 833 - . . scaffold1708 GLEAN mRNA 6993 8771 0.777526 + . ID=CGI_10005574; scaffold1708 WUBlastX LINE_L2 6993 8771 233 - . . scaffold1708 GLEAN mRNA 27308 27347 1 + . ID=CGI_10005577; scaffold1708 TRF Tandem_Repeat 27308 27347 53 + . . scaffold41740 GLEAN mRNA 22213 22509 0.963667 - . ID=CGI_10005584; scaffold41740 WUBlastX LINE_L2 22213 22509 20 - . . scaffold41740 GLEAN mRNA 65114 65166 1 - . ID=CGI_10005585; scaffold41740 TRF Tandem_Repeat 65114 65166 106 + . . scaffold41740 GLEAN mRNA 73923 75170 1 - . ID=CGI_10005585; scaffold41740 TRF Tandem_Repeat 73923 75170 1815 + . . scaffold41740 GLEAN mRNA 76493 76546 1 - . ID=CGI_10005585; scaffold41740 TRF Tandem_Repeat 76493 76546 74 + . . scaffold41740 GLEAN mRNA 122717 122881 0.247638 + . ID=CGI_10005588; scaffold41740 TRF Tandem_Repeat 122717 122881 213 + . . scaffold41740 GLEAN mRNA 128938 129765 0.579463 - . ID=CGI_10005589; scaffold41740 WUBlastX DNA_Sola 128938 129765 186 - . . scaffold41740 GLEAN mRNA 129202 130029 0.579463 - . ID=CGI_10005589; scaffold41740 WUBlastX DNA_Sola 129202 130029 26 - . . scaffold604 GLEAN mRNA 14278 14487 0.995797 - . ID=CGI_10005590; scaffold604 WUBlastX LINE_L1-Tx1 14278 14487 92 + . . scaffold604 GLEAN mRNA 18992 19064 0.995797 - . ID=CGI_10005590; scaffold604 TRF Tandem_Repeat 18992 19064 56 + . . scaffold604 GLEAN mRNA 33497 33540 0.995797 - . ID=CGI_10005590; scaffold604 TRF Tandem_Repeat 33497 33540 54 + . . scaffold604 GLEAN mRNA 42853 42890 0.454666 + . ID=CGI_10005591; scaffold604 TRF Tandem_Repeat 42853 42890 76 + . . scaffold604 GLEAN mRNA 44157 44194 0.454666 + . ID=CGI_10005591; scaffold604 TRF Tandem_Repeat 44157 44194 76 + . . scaffold604 GLEAN mRNA 45150 45341 0.454666 + . ID=CGI_10005591; scaffold604 WUBlastX LINE_RTE-X 45150 45341 50 - . . scaffold604 GLEAN mRNA 45198 45338 0.454666 + . ID=CGI_10005591; scaffold604 WUBlastX LINE_RTE-X 45198 45338 54 - . . scaffold604 GLEAN mRNA 45084 45341 0.454666 + . ID=CGI_10005591; scaffold604 WUBlastX LINE_RTE-X 45084 45341 43 - . . scaffold604 GLEAN mRNA 45198 45377 0.454666 + . ID=CGI_10005591; scaffold604 WUBlastX LINE_RTE-X 45198 45377 46 - . . scaffold604 GLEAN mRNA 57964 57988 0.999924 - . ID=CGI_10005592; scaffold604 TRF Tandem_Repeat 57964 57988 50 + . . scaffold604 GLEAN mRNA 59369 59438 0.999924 - . ID=CGI_10005592; scaffold604 TRF Tandem_Repeat 59369 59438 140 + . . scaffold41766 GLEAN mRNA 32206 32490 0.752559 - . ID=CGI_10005601; scaffold41766 WUBlastX LTR_Gypsy 32206 32490 69 - . . scaffold41766 GLEAN mRNA 31418 31501 0.752559 - . ID=CGI_10005601; scaffold41766 WUBlastX LTR_Gypsy 31418 31501 21 - . . scaffold41766 GLEAN mRNA 32174 32359 0.752559 - . ID=CGI_10005601; scaffold41766 WUBlastX LTR_Gypsy 32174 32359 61 - . . scaffold41766 GLEAN mRNA 32263 32484 0.752559 - . ID=CGI_10005601; scaffold41766 WUBlastX LTR_Gypsy 32263 32484 93 - . . scaffold41766 GLEAN mRNA 32111 32359 0.752559 - . ID=CGI_10005601; scaffold41766 WUBlastX LTR_Gypsy 32111 32359 36 - . . scaffold41766 GLEAN mRNA 32362 32613 0.752559 - . ID=CGI_10005601; scaffold41766 WUBlastX LTR_Gypsy 32362 32613 56 - . . scaffold41766 GLEAN mRNA 37857 37910 0.544153 + . ID=CGI_10005602; scaffold41766 TRF Tandem_Repeat 37857 37910 101 + . . scaffold41766 GLEAN mRNA 47816 47861 0.0583207 + . ID=CGI_10005603; scaffold41766 TRF Tandem_Repeat 47816 47861 74 + . . scaffold41766 GLEAN mRNA 47952 47995 0.0583207 + . ID=CGI_10005603; scaffold41766 TRF Tandem_Repeat 47952 47995 88 + . . scaffold41766 GLEAN mRNA 48379 48412 0.0583207 + . ID=CGI_10005603; scaffold41766 TRF Tandem_Repeat 48379 48412 59 + . . scaffold41766 GLEAN mRNA 55448 55521 0.0583207 + . ID=CGI_10005603; scaffold41766 TRF Tandem_Repeat 55448 55521 148 + . . scaffold41766 GLEAN mRNA 57679 57715 0.0583207 + . ID=CGI_10005603; scaffold41766 TRF Tandem_Repeat 57679 57715 74 + . . scaffold41766 GLEAN mRNA 49116 49166 0.0583207 + . ID=CGI_10005603; scaffold41766 TRF Tandem_Repeat 49116 49166 102 + . . scaffold41762 GLEAN mRNA 4508 4558 0.999975 + . ID=CGI_10005607; scaffold41762 TRF Tandem_Repeat 4508 4558 66 + . . scaffold1491 GLEAN mRNA 13855 13909 0.99909 - . ID=CGI_10005609; scaffold1491 TRF Tandem_Repeat 13855 13909 110 + . . scaffold1491 GLEAN mRNA 14498 14537 0.99909 - . ID=CGI_10005609; scaffold1491 TRF Tandem_Repeat 14498 14537 80 + . . scaffold1491 GLEAN mRNA 47351 47422 0.999372 - . ID=CGI_10005612; scaffold1491 WUBlastX LTR_Gypsy 47351 47695 52 - . . scaffold1491 GLEAN mRNA 58552 59542 0.998725 - . ID=CGI_10005614; scaffold1491 TRF Tandem_Repeat 58552 59542 914 + . . scaffold1491 GLEAN mRNA 100172 100259 0.90545 - . ID=CGI_10005615; scaffold1491 TRF Tandem_Repeat 100172 100259 114 + . . scaffold41786 GLEAN mRNA 82624 82670 0.798966 - . ID=CGI_10005624; scaffold41786 TRF Tandem_Repeat 82624 82670 94 + . . scaffold41786 GLEAN mRNA 90336 90377 0.798966 - . ID=CGI_10005624; scaffold41786 TRF Tandem_Repeat 90336 90377 84 + . . scaffold41786 GLEAN mRNA 95273 95317 0.798966 - . ID=CGI_10005624; scaffold41786 TRF Tandem_Repeat 95273 95317 90 + . . scaffold41786 GLEAN mRNA 99335 99822 0.737665 + . ID=CGI_10005625; scaffold41786 TRF Tandem_Repeat 99335 99822 832 + . . scaffold41786 GLEAN mRNA 110005 110316 0.994534 + . ID=CGI_10005626; scaffold41786 WUBlastX DNA_hAT-Tip100 110005 110316 144 + . . scaffold41786 GLEAN mRNA 111514 111771 0.994534 + . ID=CGI_10005626; scaffold41786 WUBlastX DNA_hAT-Tip100 111514 111771 42 + . . scaffold41786 GLEAN mRNA 109348 109917 0.994534 + . ID=CGI_10005626; scaffold41786 WUBlastX DNA_hAT 109348 109917 161 + . . scaffold41786 GLEAN mRNA 109063 109458 0.994534 + . ID=CGI_10005626; scaffold41786 WUBlastX DNA_hAT-Tip100 109057 109458 22 + . . scaffold41786 GLEAN mRNA 109138 109902 0.994534 + . ID=CGI_10005626; scaffold41786 WUBlastX DNA_hAT-Tip100 109138 109902 93 + . . scaffold41786 GLEAN mRNA 111550 111768 0.994534 + . ID=CGI_10005626; scaffold41786 WUBlastX DNA_hAT-Tip100 111550 111768 59 + . . scaffold41786 GLEAN mRNA 111589 111762 0.994534 + . ID=CGI_10005626; scaffold41786 WUBlastX DNA_hAT-Tip100 111589 111762 61 + . . scaffold1089 GLEAN mRNA 46054 46096 0.394146 - . ID=CGI_10005629; scaffold1089 TRF Tandem_Repeat 46054 46096 86 + . . scaffold41776 GLEAN mRNA 33685 33771 0.542101 + . ID=CGI_10005630; scaffold41776 WUBlastX DNA_P 33490 33771 93 + . . scaffold41776 GLEAN mRNA 129612 129641 0.65834 - . ID=CGI_10005631; scaffold41776 TRF Tandem_Repeat 129612 129641 60 + . . scaffold41806 GLEAN mRNA 1466 1795 0.999723 - . ID=CGI_10005641; scaffold41806 WUBlastX LINE_RTE-X 1466 1795 52 + . . scaffold41806 GLEAN mRNA 1478 1738 0.999723 - . ID=CGI_10005641; scaffold41806 WUBlastX LINE_RTE-X 1478 1738 52 + . . scaffold41806 GLEAN mRNA 81254 81303 0.937542 - . ID=CGI_10005645; scaffold41806 TRF Tandem_Repeat 81254 81303 93 + . . scaffold41806 GLEAN mRNA 84708 85075 0.937542 - . ID=CGI_10005645; scaffold41806 TRF Tandem_Repeat 84708 85075 92 + . . scaffold41806 GLEAN mRNA 84812 84880 0.937542 - . ID=CGI_10005645; scaffold41806 TRF Tandem_Repeat 84812 84880 52 + . . scaffold41806 GLEAN mRNA 84782 85005 0.937542 - . ID=CGI_10005645; scaffold41806 TRF Tandem_Repeat 84782 85005 79 + . . scaffold41806 GLEAN mRNA 84811 84884 0.937542 - . ID=CGI_10005645; scaffold41806 TRF Tandem_Repeat 84811 84884 60 + . . scaffold41806 GLEAN mRNA 84747 85132 0.937542 - . ID=CGI_10005645; scaffold41806 TRF Tandem_Repeat 84747 85132 115 + . . scaffold41806 GLEAN mRNA 85428 86201 0.937542 - . ID=CGI_10005645; scaffold41806 TRF Tandem_Repeat 85428 86201 1047 + . . scaffold41806 GLEAN mRNA 86313 86356 0.937542 - . ID=CGI_10005645; scaffold41806 TRF Tandem_Repeat 86313 86356 88 + . . scaffold41806 GLEAN mRNA 91690 92444 0.937542 - . ID=CGI_10005645; scaffold41806 TRF Tandem_Repeat 91690 92444 939 + . . scaffold41806 GLEAN mRNA 92459 92489 0.937542 - . ID=CGI_10005645; scaffold41806 TRF Tandem_Repeat 92459 92489 62 + . . scaffold41816 GLEAN mRNA 10519 10562 0.728522 - . ID=CGI_10005647; scaffold41816 TRF Tandem_Repeat 10519 10562 79 + . . scaffold41816 GLEAN mRNA 25040 25270 0.728522 - . ID=CGI_10005647; scaffold41816 WUBlastX LTR_Ngaro 25040 25270 65 - . . scaffold41816 GLEAN mRNA 24223 24567 0.728522 - . ID=CGI_10005647; scaffold41816 WUBlastX LTR_Ngaro 24223 24567 119 - . . scaffold41816 GLEAN mRNA 24995 25210 0.728522 - . ID=CGI_10005647; scaffold41816 WUBlastX LTR_Ngaro 24995 25210 50 - . . scaffold41816 GLEAN mRNA 25246 25353 0.728522 - . ID=CGI_10005647; scaffold41816 WUBlastX LTR_Ngaro 25246 25353 23 - . . scaffold41816 GLEAN mRNA 25070 25231 0.728522 - . ID=CGI_10005647; scaffold41816 WUBlastX LTR_Ngaro 25070 25231 68 - . . scaffold41816 GLEAN mRNA 25377 25496 0.728522 - . ID=CGI_10005647; scaffold41816 WUBlastX LTR_Ngaro 25377 25496 27 - . . scaffold41816 GLEAN mRNA 23906 24235 0.728522 - . ID=CGI_10005647; scaffold41816 WUBlastX LTR_Ngaro 23906 24235 111 - . . scaffold41816 GLEAN mRNA 20415 20687 0.728522 - . ID=CGI_10005647; scaffold41816 WUBlastX DNA_Academ 20415 20687 63 + . . scaffold41816 GLEAN mRNA 25246 25332 0.728522 - . ID=CGI_10005647; scaffold41816 WUBlastX LTR_Ngaro 25246 25332 24 - . . scaffold41816 GLEAN mRNA 85874 86014 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_RTE-X 85874 86014 38 - . . scaffold41816 GLEAN mRNA 88537 88686 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_L1 88537 88686 101 - . . scaffold41816 GLEAN mRNA 85953 86408 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_RTE-X 85953 86408 185 - . . scaffold41816 GLEAN mRNA 87591 88391 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_RTE-X 87591 88391 150 - . . scaffold41816 GLEAN mRNA 86411 86608 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_RTE-X 86411 86608 98 - . . scaffold41816 GLEAN mRNA 86960 87229 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_RTE-X 86960 87229 25 - . . scaffold41816 GLEAN mRNA 85301 85873 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_RTE-X 85301 85873 74 - . . scaffold41816 GLEAN mRNA 86966 87373 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_RTE-X 86966 87373 21 - . . scaffold41816 GLEAN mRNA 88683 89183 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_L2 88683 89183 149 - . . scaffold41816 GLEAN mRNA 86557 86922 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_RTE-X 86557 86922 154 - . . scaffold41816 GLEAN mRNA 86569 86988 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_RTE-BovB 86569 86988 29 - . . scaffold41816 GLEAN mRNA 87116 87289 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_CR1 87116 87289 26 - . . scaffold41816 GLEAN mRNA 88710 89267 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_L1 88710 89267 75 - . . scaffold41816 GLEAN mRNA 95357 95453 1 - . ID=CGI_10005650; scaffold41816 TRF Tandem_Repeat 95357 95453 149 + . . scaffold41816 GLEAN mRNA 95492 96805 1 - . ID=CGI_10005650; scaffold41816 TRF Tandem_Repeat 95492 96805 1449 + . . scaffold41816 GLEAN mRNA 95511 96788 1 - . ID=CGI_10005650; scaffold41816 TRF Tandem_Repeat 95511 96788 1631 + . . scaffold41798 GLEAN mRNA 114684 114851 1 - . ID=CGI_10005657; scaffold41798 WUBlastX DNA_Kolobok 114684 114851 87 - . . scaffold922 GLEAN mRNA 31238 31417 0.364166 - . ID=CGI_10005661; scaffold922 WUBlastX LINE_L2 31238 31417 60 - . . scaffold922 GLEAN mRNA 38076 38168 0.364166 - . ID=CGI_10005661; scaffold922 TRF Tandem_Repeat 38076 38168 170 + . . scaffold922 GLEAN mRNA 38683 38730 0.364166 - . ID=CGI_10005661; scaffold922 TRF Tandem_Repeat 38683 38730 96 + . . scaffold922 GLEAN mRNA 40132 40216 0.364166 - . ID=CGI_10005661; scaffold922 TRF Tandem_Repeat 40132 40216 129 + . . scaffold922 GLEAN mRNA 40417 40450 0.364166 - . ID=CGI_10005661; scaffold922 TRF Tandem_Repeat 40417 40450 59 + . . scaffold922 GLEAN mRNA 71642 71686 0.690826 - . ID=CGI_10005662; scaffold922 TRF Tandem_Repeat 71642 71686 90 + . . scaffold922 GLEAN mRNA 77465 77526 0.690826 - . ID=CGI_10005662; scaffold922 TRF Tandem_Repeat 77465 77526 124 + . . scaffold922 GLEAN mRNA 93466 93876 0.690826 - . ID=CGI_10005662; scaffold922 WUBlastX DNA_Harbinger 93466 93876 71 - . . scaffold922 GLEAN mRNA 87005 87169 0.690826 - . ID=CGI_10005662; scaffold922 WUBlastX LINE_CR1-L2 87005 87169 89 - . . scaffold922 GLEAN mRNA 93484 94032 0.690826 - . ID=CGI_10005662; scaffold922 WUBlastX DNA_Harbinger 93484 94032 55 - . . scaffold922 GLEAN mRNA 86966 87169 0.690826 - . ID=CGI_10005662; scaffold922 WUBlastX LINE_CR1-L2 86966 87169 77 - . . scaffold41828 GLEAN mRNA 19041 19074 1 - . ID=CGI_10005672; scaffold41828 TRF Tandem_Repeat 19041 19074 68 + . . scaffold41828 GLEAN mRNA 20080 21039 1 - . ID=CGI_10005672; scaffold41828 WUBlastX LINE_RTE-X 20080 21039 292 - . . scaffold41828 GLEAN mRNA 61720 61922 0.931608 - . ID=CGI_10005674; scaffold41828 TRF Tandem_Repeat 61720 61922 258 + . . scaffold41828 GLEAN mRNA 69805 69852 0.931608 - . ID=CGI_10005674; scaffold41828 TRF Tandem_Repeat 69805 69852 96 + . . scaffold41828 GLEAN mRNA 70973 71447 0.931608 - . ID=CGI_10005674; scaffold41828 TRF Tandem_Repeat 70973 71447 496 + . . scaffold41828 GLEAN mRNA 65527 65644 0.931608 - . ID=CGI_10005674; scaffold41828 TRF Tandem_Repeat 65527 65644 162 + . . scaffold41828 GLEAN mRNA 78322 78387 0.427943 + . ID=CGI_10005676; scaffold41828 TRF Tandem_Repeat 78322 78387 80 + . . scaffold41828 GLEAN mRNA 86678 86713 0.427943 + . ID=CGI_10005676; scaffold41828 TRF Tandem_Repeat 86678 86713 65 + . . scaffold41828 GLEAN mRNA 86824 86863 0.427943 + . ID=CGI_10005676; scaffold41828 TRF Tandem_Repeat 86824 86863 53 + . . scaffold41828 GLEAN mRNA 87036 89535 0.427943 + . ID=CGI_10005676; scaffold41828 TRF Tandem_Repeat 87036 89535 2571 + . . scaffold41828 GLEAN mRNA 87044 89507 0.427943 + . ID=CGI_10005676; scaffold41828 TRF Tandem_Repeat 87044 89507 2990 + . . scaffold41828 GLEAN mRNA 87037 89535 0.427943 + . ID=CGI_10005676; scaffold41828 TRF Tandem_Repeat 87037 89535 2668 + . . scaffold41828 GLEAN mRNA 131449 131563 0.983301 + . ID=CGI_10005680; scaffold41828 TRF Tandem_Repeat 131449 131563 131 + . . scaffold97 GLEAN mRNA 13571 13596 0.72876 - . ID=CGI_10005681; scaffold97 TRF Tandem_Repeat 13571 13596 52 + . . scaffold97 GLEAN mRNA 41005 41834 0.312293 + . ID=CGI_10005683; scaffold97 TRF Tandem_Repeat 41005 41834 258 + . . scaffold97 GLEAN mRNA 41014 41314 0.312293 + . ID=CGI_10005683; scaffold97 TRF Tandem_Repeat 41014 41314 347 + . . scaffold97 GLEAN mRNA 41005 41834 0.312293 + . ID=CGI_10005683; scaffold97 TRF Tandem_Repeat 41005 41834 382 + . . scaffold97 GLEAN mRNA 41005 41386 1 - . ID=CGI_10005684; scaffold97 TRF Tandem_Repeat 41005 41834 258 + . . scaffold97 GLEAN mRNA 41014 41314 1 - . ID=CGI_10005684; scaffold97 TRF Tandem_Repeat 41014 41314 347 + . . scaffold97 GLEAN mRNA 41005 41386 1 - . ID=CGI_10005684; scaffold97 TRF Tandem_Repeat 41005 41834 382 + . . scaffold97 GLEAN mRNA 80830 81444 0.60683 - . ID=CGI_10005686; scaffold97 WUBlastX LINE_L1-Tx1 80830 81444 140 + . . scaffold97 GLEAN mRNA 82277 82332 0.60683 - . ID=CGI_10005686; scaffold97 TRF Tandem_Repeat 82277 82332 112 + . . scaffold97 GLEAN mRNA 91749 91824 0.60683 - . ID=CGI_10005686; scaffold97 TRF Tandem_Repeat 91749 91824 50 + . . scaffold97 GLEAN mRNA 88684 88803 0.60683 - . ID=CGI_10005686; scaffold97 WUBlastX DNA_IS4EU 88684 88803 21 + . . scaffold97 GLEAN mRNA 88758 89123 0.60683 - . ID=CGI_10005686; scaffold97 WUBlastX DNA_IS4EU 88758 89123 145 + . . scaffold97 GLEAN mRNA 90361 90459 0.60683 - . ID=CGI_10005686; scaffold97 WUBlastX DNA_IS4EU 90361 90459 35 - . . scaffold97 GLEAN mRNA 81480 81947 0.60683 - . ID=CGI_10005686; scaffold97 WUBlastX LINE_L1-Tx1 81480 81947 127 + . . scaffold97 GLEAN mRNA 97709 97789 0.615205 - . ID=CGI_10005687; scaffold97 TRF Tandem_Repeat 97709 97789 137 + . . scaffold1561 GLEAN mRNA 13155 13190 0.999234 + . ID=CGI_10005689; scaffold1561 TRF Tandem_Repeat 13155 13190 54 + . . scaffold1561 GLEAN mRNA 14644 14919 0.999234 + . ID=CGI_10005689; scaffold1561 WUBlastX LTR_Ngaro 14644 14919 83 + . . scaffold1561 GLEAN mRNA 18291 19007 0.999234 + . ID=CGI_10005689; scaffold1561 WUBlastX LINE_RTE-X 18291 19007 32 - . . scaffold1561 GLEAN mRNA 18471 19823 0.999234 + . ID=CGI_10005689; scaffold1561 WUBlastX LINE_RTE-X 18471 19823 203 - . . scaffold1561 GLEAN mRNA 16436 17650 0.999234 + . ID=CGI_10005689; scaffold1561 WUBlastX LINE_RTE-X 16436 17650 490 - . . scaffold1561 GLEAN mRNA 17656 18228 0.999234 + . ID=CGI_10005689; scaffold1561 WUBlastX LINE_RTE-X 17656 18228 367 - . . scaffold1561 GLEAN mRNA 17689 18333 0.999234 + . ID=CGI_10005689; scaffold1561 WUBlastX LINE_L2 17689 18333 110 - . . scaffold1561 GLEAN mRNA 67801 67857 0.425742 + . ID=CGI_10005691; scaffold1561 TRF Tandem_Repeat 67801 67857 87 + . . scaffold1561 GLEAN mRNA 96333 96530 0.999946 - . ID=CGI_10005694; scaffold1561 TRF Tandem_Repeat 96333 96530 101 + . . scaffold1561 GLEAN mRNA 97671 97904 0.999946 - . ID=CGI_10005694; scaffold1561 WUBlastX LINE_RTE-X 97671 97904 81 - . . scaffold1561 GLEAN mRNA 97746 97982 0.999946 - . ID=CGI_10005694; scaffold1561 WUBlastX LINE_RTE-X 97746 97982 58 - . . scaffold1561 GLEAN mRNA 98875 99483 0.999946 - . ID=CGI_10005694; scaffold1561 WUBlastX LINE_RTE-X 98875 99483 293 - . . scaffold1561 GLEAN mRNA 98881 99909 0.999946 - . ID=CGI_10005694; scaffold1561 WUBlastX LINE_RTE-X 98881 99909 246 - . . scaffold1561 GLEAN mRNA 98806 99525 0.999946 - . ID=CGI_10005694; scaffold1561 WUBlastX LINE_RTE-X 98806 99525 260 - . . scaffold1561 GLEAN mRNA 100500 100547 0.999946 - . ID=CGI_10005694; scaffold1561 WUBlastX LINE_CR1 100500 100547 22 - . . scaffold1561 GLEAN mRNA 100353 100454 0.999946 - . ID=CGI_10005694; scaffold1561 WUBlastX LINE_RTE-BovB 100353 100454 21 - . . scaffold1561 GLEAN mRNA 109275 110062 0.678864 - . ID=CGI_10005695; scaffold1561 TRF Tandem_Repeat 109275 110062 779 + . . scaffold1561 GLEAN mRNA 109628 110062 0.678864 - . ID=CGI_10005695; scaffold1561 TRF Tandem_Repeat 109628 110062 550 + . . scaffold1561 GLEAN mRNA 110055 110086 0.678864 - . ID=CGI_10005695; scaffold1561 TRF Tandem_Repeat 110055 110086 64 + . . scaffold1561 GLEAN mRNA 110271 110385 0.678864 - . ID=CGI_10005695; scaffold1561 TRF Tandem_Repeat 110271 110385 72 + . . scaffold1561 GLEAN mRNA 110850 110907 0.678864 - . ID=CGI_10005695; scaffold1561 TRF Tandem_Repeat 110850 110907 116 + . . scaffold1561 GLEAN mRNA 112221 112252 0.678864 - . ID=CGI_10005695; scaffold1561 TRF Tandem_Repeat 112221 112252 64 + . . scaffold1561 GLEAN mRNA 112252 112288 0.678864 - . ID=CGI_10005695; scaffold1561 TRF Tandem_Repeat 112252 112288 74 + . . scaffold1561 GLEAN mRNA 125862 125889 0.678864 - . ID=CGI_10005695; scaffold1561 TRF Tandem_Repeat 125862 125889 56 + . . scaffold41834 GLEAN mRNA 49990 51777 0.346565 + . ID=CGI_10005704; scaffold41834 WUBlastX DNA_P 49990 51777 158 - . . scaffold41834 GLEAN mRNA 50050 51366 0.346565 + . ID=CGI_10005704; scaffold41834 WUBlastX DNA_P 50050 51366 225 - . . scaffold41834 GLEAN mRNA 75469 75681 0.396652 + . ID=CGI_10005705; scaffold41834 WUBlastX LINE_CR1 75469 75681 27 + . . scaffold41824 GLEAN mRNA 31460 31499 0.780965 - . ID=CGI_10005708; scaffold41824 TRF Tandem_Repeat 31460 31499 80 + . . scaffold41824 GLEAN mRNA 37970 38104 0.780965 - . ID=CGI_10005708; scaffold41824 TRF Tandem_Repeat 37970 38104 67 + . . scaffold41824 GLEAN mRNA 38021 38114 0.780965 - . ID=CGI_10005708; scaffold41824 TRF Tandem_Repeat 38021 38114 91 + . . scaffold41824 GLEAN mRNA 94372 94420 0.128684 - . ID=CGI_10005710; scaffold41824 TRF Tandem_Repeat 94372 94420 98 + . . scaffold41852 GLEAN mRNA 32953 32987 0.737892 + . ID=CGI_10005729; scaffold41852 TRF Tandem_Repeat 32953 32987 70 + . . scaffold41852 GLEAN mRNA 39765 39814 0.737892 + . ID=CGI_10005729; scaffold41852 TRF Tandem_Repeat 39765 39814 57 + . . scaffold41852 GLEAN mRNA 67764 67830 0.728198 - . ID=CGI_10005731; scaffold41852 TRF Tandem_Repeat 67764 67830 125 + . . scaffold41852 GLEAN mRNA 74361 74396 0.728198 - . ID=CGI_10005731; scaffold41852 TRF Tandem_Repeat 74361 74396 72 + . . scaffold41852 GLEAN mRNA 81941 81980 0.728198 - . ID=CGI_10005731; scaffold41852 TRF Tandem_Repeat 81941 81980 73 + . . scaffold41852 GLEAN mRNA 109091 109294 0.999855 + . ID=CGI_10005735; scaffold41852 WUBlastX DNA_Harbinger 109091 109294 98 - . . scaffold41852 GLEAN mRNA 109290 109565 0.999855 + . ID=CGI_10005735; scaffold41852 WUBlastX DNA_Harbinger 109290 109565 179 - . . scaffold1062 GLEAN mRNA 11898 11991 0.462682 - . ID=CGI_10005737; scaffold1062 TRF Tandem_Repeat 11898 11991 111 + . . scaffold1062 GLEAN mRNA 13953 14011 0.462682 - . ID=CGI_10005737; scaffold1062 TRF Tandem_Repeat 13953 14011 50 + . . scaffold1062 GLEAN mRNA 9104 9529 0.462682 - . ID=CGI_10005737; scaffold1062 WUBlastX LINE_CR1 9104 9529 129 + . . scaffold1062 GLEAN mRNA 9098 9613 0.462682 - . ID=CGI_10005737; scaffold1062 WUBlastX LINE_CR1-L2 9098 9613 31 + . . scaffold1062 GLEAN mRNA 8793 9104 0.462682 - . ID=CGI_10005737; scaffold1062 WUBlastX LINE_CR1 8793 9104 152 + . . scaffold1062 GLEAN mRNA 8650 8805 0.462682 - . ID=CGI_10005737; scaffold1062 WUBlastX LINE_CR1 8650 8805 139 + . . scaffold1062 GLEAN mRNA 8611 8805 0.462682 - . ID=CGI_10005737; scaffold1062 WUBlastX LINE_CR1 8611 8805 107 + . . scaffold1062 GLEAN mRNA 8530 8805 0.462682 - . ID=CGI_10005737; scaffold1062 WUBlastX LINE_L2 8530 8805 73 + . . scaffold1062 GLEAN mRNA 70442 70486 0.64555 + . ID=CGI_10005741; scaffold1062 TRF Tandem_Repeat 70442 70486 90 + . . scaffold1062 GLEAN mRNA 76116 76182 0.64555 + . ID=CGI_10005741; scaffold1062 TRF Tandem_Repeat 76116 76182 89 + . . scaffold1062 GLEAN mRNA 76703 76789 0.64555 + . ID=CGI_10005741; scaffold1062 TRF Tandem_Repeat 76703 76789 129 + . . scaffold1062 GLEAN mRNA 76968 77024 0.64555 + . ID=CGI_10005741; scaffold1062 TRF Tandem_Repeat 76968 77024 114 + . . scaffold1062 GLEAN mRNA 79393 79459 0.64555 + . ID=CGI_10005741; scaffold1062 TRF Tandem_Repeat 79393 79459 89 + . . scaffold1062 GLEAN mRNA 75968 76102 0.64555 + . ID=CGI_10005741; scaffold1062 WUBlastX LTR_Gypsy 75968 76102 85 + . . scaffold1062 GLEAN mRNA 100824 101606 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 100824 101606 132 - . . scaffold1062 GLEAN mRNA 107220 108275 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX DNA_Crypton 107220 108275 172 + . . scaffold1062 GLEAN mRNA 100465 100791 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 100357 100791 158 - . . scaffold1062 GLEAN mRNA 104175 104639 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 104175 104639 292 - . . scaffold1062 GLEAN mRNA 100973 101899 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 100973 101899 280 - . . scaffold1062 GLEAN mRNA 101848 103113 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 101848 103113 664 - . . scaffold1062 GLEAN mRNA 103638 104633 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 103638 104633 280 - . . scaffold1062 GLEAN mRNA 104654 104827 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 104654 104827 109 - . . scaffold1062 GLEAN mRNA 107436 108287 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX DNA_Crypton 107436 108287 188 + . . scaffold1173 GLEAN mRNA 17419 17509 0.651135 + . ID=CGI_10005744; scaffold1173 TRF Tandem_Repeat 17419 17509 164 + . . scaffold1173 GLEAN mRNA 19128 19177 0.651135 + . ID=CGI_10005744; scaffold1173 TRF Tandem_Repeat 19128 19177 75 + . . scaffold1173 GLEAN mRNA 19560 19603 0.651135 + . ID=CGI_10005744; scaffold1173 TRF Tandem_Repeat 19560 19603 88 + . . scaffold1173 GLEAN mRNA 21038 21102 0.651135 + . ID=CGI_10005744; scaffold1173 TRF Tandem_Repeat 21038 21102 121 + . . scaffold1173 GLEAN mRNA 67037 67091 1 + . ID=CGI_10005745; scaffold1173 TRF Tandem_Repeat 67037 67091 65 + . . scaffold1173 GLEAN mRNA 67033 67088 1 + . ID=CGI_10005745; scaffold1173 TRF Tandem_Repeat 67033 67088 71 + . . scaffold1173 GLEAN mRNA 68376 69146 1 + . ID=CGI_10005745; scaffold1173 WUBlastX DNA_TcMar-m44 68376 69146 453 + . . scaffold1173 GLEAN mRNA 69460 69720 1 + . ID=CGI_10005745; scaffold1173 WUBlastX DNA_TcMar-m44 69460 69720 77 + . . scaffold1173 GLEAN mRNA 69445 69603 1 + . ID=CGI_10005745; scaffold1173 WUBlastX DNA_TcMar-m44 69445 69603 78 + . . scaffold1173 GLEAN mRNA 85326 85381 0.777801 + . ID=CGI_10005746; scaffold1173 TRF Tandem_Repeat 85326 85381 58 + . . scaffold1173 GLEAN mRNA 85326 85383 0.777801 + . ID=CGI_10005746; scaffold1173 TRF Tandem_Repeat 85326 85383 64 + . . scaffold1173 GLEAN mRNA 87709 87751 0.777801 + . ID=CGI_10005746; scaffold1173 TRF Tandem_Repeat 87709 87751 86 + . . scaffold1173 GLEAN mRNA 87709 87751 0.605033 - . ID=CGI_10005747; scaffold1173 TRF Tandem_Repeat 87709 87751 86 + . . scaffold1173 GLEAN mRNA 92786 92890 0.605033 - . ID=CGI_10005747; scaffold1173 TRF Tandem_Repeat 92786 92890 119 + . . scaffold1173 GLEAN mRNA 101025 101084 0.605033 - . ID=CGI_10005747; scaffold1173 TRF Tandem_Repeat 101025 101084 120 + . . scaffold1173 GLEAN mRNA 100093 100200 0.605033 - . ID=CGI_10005747; scaffold1173 WUBlastX LINE_Penelope 100093 100200 56 + . . scaffold1173 GLEAN mRNA 100172 100672 0.605033 - . ID=CGI_10005747; scaffold1173 WUBlastX LINE_Penelope 100172 100672 129 + . . scaffold64 GLEAN mRNA 1321 1444 0.999999 - . ID=CGI_10005749; scaffold64 TRF Tandem_Repeat 1321 1444 230 + . . scaffold64 GLEAN mRNA 40024 40057 0.972109 + . ID=CGI_10005750; scaffold64 TRF Tandem_Repeat 40024 40057 68 + . . scaffold64 GLEAN mRNA 40024 40057 0.934793 - . ID=CGI_10005751; scaffold64 TRF Tandem_Repeat 40024 40057 68 + . . scaffold64 GLEAN mRNA 52960 52992 0.934793 - . ID=CGI_10005751; scaffold64 TRF Tandem_Repeat 52960 52992 57 + . . scaffold64 GLEAN mRNA 127225 127548 0.997548 - . ID=CGI_10005753; scaffold64 WUBlastX DNA_Harbinger 127225 127548 155 - . . scaffold64 GLEAN mRNA 119817 120026 0.997548 - . ID=CGI_10005753; scaffold64 WUBlastX DNA_Harbinger 119817 120026 72 + . . scaffold64 GLEAN mRNA 124610 125065 0.997548 - . ID=CGI_10005753; scaffold64 WUBlastX DNA_Harbinger 124610 125065 301 + . . scaffold41858 GLEAN mRNA 17094 17152 0.448972 - . ID=CGI_10005759; scaffold41858 TRF Tandem_Repeat 17094 17152 109 + . . scaffold41858 GLEAN mRNA 20142 20200 0.747151 - . ID=CGI_10005760; scaffold41858 TRF Tandem_Repeat 20142 20200 118 + . . scaffold41858 GLEAN mRNA 39073 39206 1 + . ID=CGI_10005763; scaffold41858 TRF Tandem_Repeat 39073 39206 155 + . . scaffold41858 GLEAN mRNA 62450 62527 0.999486 - . ID=CGI_10005765; scaffold41858 TRF Tandem_Repeat 62450 62527 156 + . . scaffold41858 GLEAN mRNA 88214 88282 0.999356 - . ID=CGI_10005768; scaffold41858 TRF Tandem_Repeat 88214 88282 129 + . . scaffold41858 GLEAN mRNA 90875 91222 0.999356 - . ID=CGI_10005768; scaffold41858 WUBlastX DNA_TcMar-Tc1 90875 91222 119 + . . scaffold41858 GLEAN mRNA 90935 91213 0.999356 - . ID=CGI_10005768; scaffold41858 WUBlastX DNA_TcMar-Tc1 90935 91213 131 + . . scaffold41858 GLEAN mRNA 101233 101808 0.998504 + . ID=CGI_10005769; scaffold41858 TRF Tandem_Repeat 101233 101808 1073 + . . scaffold41858 GLEAN mRNA 112790 112833 1 + . ID=CGI_10005770; scaffold41858 TRF Tandem_Repeat 112790 112833 61 + . . scaffold41858 GLEAN mRNA 113915 113972 1 + . ID=CGI_10005770; scaffold41858 TRF Tandem_Repeat 113915 113972 116 + . . scaffold41858 GLEAN mRNA 108923 110920 1 + . ID=CGI_10005770; scaffold41858 WUBlastX LINE_RTE-X 108923 110920 761 + . . scaffold41858 GLEAN mRNA 108590 110326 1 + . ID=CGI_10005770; scaffold41858 WUBlastX LINE_CR1 108590 110326 206 + . . scaffold41858 GLEAN mRNA 110345 111106 1 + . ID=CGI_10005770; scaffold41858 WUBlastX LINE_RTE-X 110345 111106 147 + . . scaffold41858 GLEAN mRNA 120887 121161 1 + . ID=CGI_10005770; scaffold41858 TRF Tandem_Repeat 120887 121161 288 + . . scaffold1562 GLEAN mRNA 75085 75218 0.997511 - . ID=CGI_10005776; scaffold1562 TRF Tandem_Repeat 75085 75218 67 + . . scaffold1562 GLEAN mRNA 75039 75289 0.997511 - . ID=CGI_10005776; scaffold1562 TRF Tandem_Repeat 75039 75289 225 + . . scaffold1562 GLEAN mRNA 82990 83388 0.997511 - . ID=CGI_10005776; scaffold1562 TRF Tandem_Repeat 82990 83388 397 + . . scaffold1562 GLEAN mRNA 88922 89580 0.997511 - . ID=CGI_10005776; scaffold1562 TRF Tandem_Repeat 88922 89580 964 + . . scaffold1562 GLEAN mRNA 105859 105957 0.997511 - . ID=CGI_10005776; scaffold1562 WUBlastX DNA_TcMar-Marin 105859 105957 65 - . . scaffold1562 GLEAN mRNA 105859 106077 0.997511 - . ID=CGI_10005776; scaffold1562 WUBlastX DNA_TcMar-Marin 105859 106077 48 - . . scaffold41884 GLEAN mRNA 39191 39244 0.994562 + . ID=CGI_10005779; scaffold41884 TRF Tandem_Repeat 39191 39244 108 + . . scaffold41884 GLEAN mRNA 52282 52790 0.351321 + . ID=CGI_10005780; scaffold41884 TRF Tandem_Repeat 52282 52790 790 + . . scaffold41884 GLEAN mRNA 56837 56887 0.351321 + . ID=CGI_10005780; scaffold41884 TRF Tandem_Repeat 56837 56887 102 + . . scaffold41884 GLEAN mRNA 59355 59441 0.351321 + . ID=CGI_10005780; scaffold41884 TRF Tandem_Repeat 59355 59441 174 + . . scaffold41884 GLEAN mRNA 57949 58347 0.351321 + . ID=CGI_10005780; scaffold41884 WUBlastX LINE_RTE-X 57949 58347 125 + . . scaffold41884 GLEAN mRNA 51652 52116 0.351321 + . ID=CGI_10005780; scaffold41884 WUBlastX RC_Helitron 51652 52116 81 + . . scaffold41884 GLEAN mRNA 57940 58461 0.351321 + . ID=CGI_10005780; scaffold41884 WUBlastX LINE_RTE-X 57940 58461 111 + . . scaffold893 GLEAN mRNA 42427 42482 1 - . ID=CGI_10005784; scaffold893 TRF Tandem_Repeat 42427 42482 58 + . . scaffold893 GLEAN mRNA 48765 48792 1 - . ID=CGI_10005784; scaffold893 TRF Tandem_Repeat 48765 48792 56 + . . scaffold893 GLEAN mRNA 87968 88020 0.990769 + . ID=CGI_10005786; scaffold893 TRF Tandem_Repeat 87968 88020 99 + . . scaffold893 GLEAN mRNA 89612 89642 0.990769 + . ID=CGI_10005786; scaffold893 TRF Tandem_Repeat 89612 89642 55 + . . scaffold893 GLEAN mRNA 132696 132726 0.692171 + . ID=CGI_10005788; scaffold893 TRF Tandem_Repeat 132696 132726 53 + . . scaffold75 GLEAN mRNA 43381 43518 0.980383 + . ID=CGI_10005789; scaffold75 WUBlastX DNA_Harbinger 43381 43518 89 - . . scaffold75 GLEAN mRNA 43381 43677 0.980383 + . ID=CGI_10005789; scaffold75 WUBlastX DNA_Harbinger 43381 43677 67 - . . scaffold75 GLEAN mRNA 48769 48909 0.92374 - . ID=CGI_10005790; scaffold75 WUBlastX DNA_TcMar-Marin 48769 48909 55 + . . scaffold75 GLEAN mRNA 49597 50001 0.92374 - . ID=CGI_10005790; scaffold75 WUBlastX DNA_TcMar-Marin 49597 50001 232 + . . scaffold75 GLEAN mRNA 67159 67995 0.92374 - . ID=CGI_10005790; scaffold75 WUBlastX LTR_Pao 67159 67995 70 - . . scaffold75 GLEAN mRNA 66961 67545 0.92374 - . ID=CGI_10005790; scaffold75 WUBlastX LTR_Pao 66961 67545 113 - . . scaffold75 GLEAN mRNA 48912 49421 0.92374 - . ID=CGI_10005790; scaffold75 WUBlastX DNA_TcMar-Marin 48912 49421 287 + . . scaffold75 GLEAN mRNA 121965 122141 0.811718 + . ID=CGI_10005793; scaffold75 TRF Tandem_Repeat 121965 122141 70 + . . scaffold75 GLEAN mRNA 125096 125134 0.811718 + . ID=CGI_10005793; scaffold75 TRF Tandem_Repeat 125096 125134 78 + . . scaffold75 GLEAN mRNA 121965 122141 0.990515 - . ID=CGI_10005794; scaffold75 TRF Tandem_Repeat 121965 122141 70 + . . scaffold41896 GLEAN mRNA 8836 8899 1 - . ID=CGI_10005801; scaffold41896 TRF Tandem_Repeat 8836 8899 96 + . . scaffold41896 GLEAN mRNA 52896 52923 0.999375 + . ID=CGI_10005806; scaffold41896 TRF Tandem_Repeat 52896 52923 56 + . . scaffold41896 GLEAN mRNA 81265 81594 1 - . ID=CGI_10005809; scaffold41896 TRF Tandem_Repeat 81265 81594 552 + . . scaffold41896 GLEAN mRNA 81847 81887 1 - . ID=CGI_10005809; scaffold41896 TRF Tandem_Repeat 81847 81887 82 + . . scaffold41896 GLEAN mRNA 91889 91927 0.675324 + . ID=CGI_10005811; scaffold41896 TRF Tandem_Repeat 91889 91927 78 + . . scaffold41896 GLEAN mRNA 93851 93894 0.675324 + . ID=CGI_10005811; scaffold41896 TRF Tandem_Repeat 93851 93894 88 + . . scaffold41896 GLEAN mRNA 96760 96794 0.675324 + . ID=CGI_10005811; scaffold41896 TRF Tandem_Repeat 96760 96794 70 + . . scaffold41900 GLEAN mRNA 35792 35841 0.842985 - . ID=CGI_10005815; scaffold41900 TRF Tandem_Repeat 35792 35841 82 + . . scaffold41900 GLEAN mRNA 102434 102597 1 - . ID=CGI_10005818; scaffold41900 TRF Tandem_Repeat 102434 102597 220 + . . scaffold41902 GLEAN mRNA 52809 52864 0.648556 - . ID=CGI_10005826; scaffold41902 TRF Tandem_Repeat 52809 52864 112 + . . scaffold41902 GLEAN mRNA 85307 85888 0.701656 + . ID=CGI_10005827; scaffold41902 TRF Tandem_Repeat 85307 85888 880 + . . scaffold41902 GLEAN mRNA 90865 90930 0.701656 + . ID=CGI_10005827; scaffold41902 TRF Tandem_Repeat 90865 90930 132 + . . scaffold41902 GLEAN mRNA 102965 103238 0.99995 - . ID=CGI_10005828; scaffold41902 TRF Tandem_Repeat 102965 103238 252 + . . scaffold41902 GLEAN mRNA 102965 103238 0.99995 - . ID=CGI_10005828; scaffold41902 TRF Tandem_Repeat 102965 103238 282 + . . scaffold41902 GLEAN mRNA 120589 120738 0.999988 - . ID=CGI_10005829; scaffold41902 TRF Tandem_Repeat 120589 120738 219 + . . scaffold41902 GLEAN mRNA 120589 120738 0.999988 - . ID=CGI_10005829; scaffold41902 TRF Tandem_Repeat 120589 120738 219 + . . scaffold41902 GLEAN mRNA 120589 120738 0.999988 - . ID=CGI_10005829; scaffold41902 TRF Tandem_Repeat 120589 120738 219 + . . scaffold41902 GLEAN mRNA 121220 121280 0.999988 - . ID=CGI_10005829; scaffold41902 TRF Tandem_Repeat 121220 121280 122 + . . scaffold41902 GLEAN mRNA 125106 125163 0.999988 - . ID=CGI_10005829; scaffold41902 TRF Tandem_Repeat 125106 125163 116 + . . scaffold41902 GLEAN mRNA 136471 136512 0.999988 - . ID=CGI_10005829; scaffold41902 TRF Tandem_Repeat 136471 136512 68 + . . scaffold41898 GLEAN mRNA 2008 2697 1 + . ID=CGI_10005830; scaffold41898 WUBlastX DNA_Kolobok-IS4 2008 2796 385 + . . scaffold41898 GLEAN mRNA 1777 2697 1 + . ID=CGI_10005830; scaffold41898 WUBlastX DNA_IS4EU 1777 2802 334 + . . scaffold41898 GLEAN mRNA 97951 98169 0.999846 - . ID=CGI_10005832; scaffold41898 WUBlastX LTR_Gypsy 97951 98169 33 - . . scaffold41898 GLEAN mRNA 98086 98208 0.999846 - . ID=CGI_10005832; scaffold41898 WUBlastX LTR_Gypsy 98086 98208 33 - . . scaffold41898 GLEAN mRNA 99037 99228 0.999846 - . ID=CGI_10005832; scaffold41898 WUBlastX LTR_Gypsy 99037 99657 68 - . . scaffold41898 GLEAN mRNA 98452 99228 0.999846 - . ID=CGI_10005832; scaffold41898 WUBlastX LTR_Gypsy 98452 99522 230 - . . scaffold41898 GLEAN mRNA 98848 99228 0.999846 - . ID=CGI_10005832; scaffold41898 WUBlastX LTR_Gypsy 98848 99549 243 - . . scaffold41898 GLEAN mRNA 98395 98646 0.999846 - . ID=CGI_10005832; scaffold41898 WUBlastX LTR_Gypsy 98395 98646 23 - . . scaffold41928 GLEAN mRNA 30980 31059 0.734554 - . ID=CGI_10005836; scaffold41928 TRF Tandem_Repeat 30980 31059 133 + . . scaffold41928 GLEAN mRNA 32433 32493 0.734554 - . ID=CGI_10005836; scaffold41928 TRF Tandem_Repeat 32433 32493 122 + . . scaffold41928 GLEAN mRNA 38825 38867 0.734554 - . ID=CGI_10005836; scaffold41928 TRF Tandem_Repeat 38825 38867 86 + . . scaffold41928 GLEAN mRNA 35796 36233 0.734554 - . ID=CGI_10005836; scaffold41928 WUBlastX DNA_Zator 35796 36233 42 + . . scaffold41928 GLEAN mRNA 35904 36134 0.734554 - . ID=CGI_10005836; scaffold41928 WUBlastX DNA_Zator 35904 36134 58 + . . scaffold41948 GLEAN mRNA 60865 60904 0.993262 - . ID=CGI_10005847; scaffold41948 TRF Tandem_Repeat 60865 60904 80 + . . scaffold41954 GLEAN mRNA 8432 8480 1 - . ID=CGI_10005849; scaffold41954 TRF Tandem_Repeat 8432 8480 53 + . . scaffold41954 GLEAN mRNA 87346 87383 1 - . ID=CGI_10005852; scaffold41954 TRF Tandem_Repeat 87346 87383 76 + . . scaffold41954 GLEAN mRNA 94599 94928 0.989895 + . ID=CGI_10005853; scaffold41954 TRF Tandem_Repeat 94599 94928 412 + . . scaffold41954 GLEAN mRNA 95252 95398 0.989895 + . ID=CGI_10005853; scaffold41954 TRF Tandem_Repeat 95252 95398 249 + . . scaffold41954 GLEAN mRNA 95490 95611 0.989895 + . ID=CGI_10005853; scaffold41954 TRF Tandem_Repeat 95490 95611 118 + . . scaffold41954 GLEAN mRNA 106054 106107 0.989895 + . ID=CGI_10005853; scaffold41954 TRF Tandem_Repeat 106054 106107 108 + . . scaffold41954 GLEAN mRNA 111281 111410 0.989895 + . ID=CGI_10005853; scaffold41954 TRF Tandem_Repeat 111281 111410 242 + . . scaffold41954 GLEAN mRNA 103382 103858 0.989895 + . ID=CGI_10005853; scaffold41954 WUBlastX LINE_L1-Tx1 103382 103858 24 - . . scaffold41954 GLEAN mRNA 102991 103362 0.989895 + . ID=CGI_10005853; scaffold41954 WUBlastX LINE_L1-Tx1 102991 103362 123 - . . scaffold41954 GLEAN mRNA 103382 103759 0.989895 + . ID=CGI_10005853; scaffold41954 WUBlastX LINE_L1-Tx1 103382 103759 139 - . . scaffold41954 GLEAN mRNA 102274 102354 0.989895 + . ID=CGI_10005853; scaffold41954 WUBlastX LINE_L1-Tx1 102274 102354 37 - . . scaffold41954 GLEAN mRNA 102339 102602 0.989895 + . ID=CGI_10005853; scaffold41954 WUBlastX LINE_L1 102339 102602 57 - . . scaffold41954 GLEAN mRNA 101975 102082 0.989895 + . ID=CGI_10005853; scaffold41954 WUBlastX LINE_L1 101975 102082 25 - . . scaffold41954 GLEAN mRNA 102339 102671 0.989895 + . ID=CGI_10005853; scaffold41954 WUBlastX LINE_L1 102339 102671 42 - . . scaffold41954 GLEAN mRNA 106054 106107 0.678183 - . ID=CGI_10005854; scaffold41954 TRF Tandem_Repeat 106054 106107 108 + . . scaffold41954 GLEAN mRNA 111281 111410 0.678183 - . ID=CGI_10005854; scaffold41954 TRF Tandem_Repeat 111281 111410 242 + . . scaffold41954 GLEAN mRNA 103382 103858 0.678183 - . ID=CGI_10005854; scaffold41954 WUBlastX LINE_L1-Tx1 103382 103858 24 - . . scaffold41954 GLEAN mRNA 103267 103362 0.678183 - . ID=CGI_10005854; scaffold41954 WUBlastX LINE_L1-Tx1 102991 103362 123 - . . scaffold41954 GLEAN mRNA 103382 103759 0.678183 - . ID=CGI_10005854; scaffold41954 WUBlastX LINE_L1-Tx1 103382 103759 139 - . . scaffold41954 GLEAN mRNA 118100 118198 0.678183 - . ID=CGI_10005854; scaffold41954 TRF Tandem_Repeat 118100 118198 53 + . . scaffold41954 GLEAN mRNA 118109 118210 0.678183 - . ID=CGI_10005854; scaffold41954 TRF Tandem_Repeat 118109 118210 75 + . . scaffold41954 GLEAN mRNA 130243 130335 1 + . ID=CGI_10005855; scaffold41954 WUBlastX LINE_RTE-X 130243 130335 34 - . . scaffold41954 GLEAN mRNA 130353 130460 1 + . ID=CGI_10005855; scaffold41954 WUBlastX LINE_RTE-X 130353 130460 48 - . . scaffold41954 GLEAN mRNA 130201 130344 1 + . ID=CGI_10005855; scaffold41954 WUBlastX LINE_RTE-X 130201 130344 30 - . . scaffold41954 GLEAN mRNA 130350 130490 1 + . ID=CGI_10005855; scaffold41954 WUBlastX LINE_RTE-X 130350 130490 25 - . . scaffold41954 GLEAN mRNA 130568 131029 1 + . ID=CGI_10005855; scaffold41954 WUBlastX LINE_RTE-X 130568 131029 80 - . . scaffold41954 GLEAN mRNA 130736 130936 1 + . ID=CGI_10005855; scaffold41954 WUBlastX LINE_RTE-X 130736 130936 122 - . . scaffold41954 GLEAN mRNA 136640 136685 1 + . ID=CGI_10005855; scaffold41954 TRF Tandem_Repeat 136640 136685 92 + . . scaffold41954 GLEAN mRNA 131364 132887 1 + . ID=CGI_10005855; scaffold41954 WUBlastX LINE_RTE-X 131364 132887 583 - . . scaffold41954 GLEAN mRNA 131187 133022 1 + . ID=CGI_10005855; scaffold41954 WUBlastX LINE_Rex-Babar 131187 133022 35 - . . scaffold41972 GLEAN mRNA 11006 11931 0.637196 + . ID=CGI_10005856; scaffold41972 TRF Tandem_Repeat 11006 11931 1270 + . . scaffold41972 GLEAN mRNA 28133 28198 0.483796 + . ID=CGI_10005857; scaffold41972 TRF Tandem_Repeat 28133 28198 132 + . . scaffold41972 GLEAN mRNA 28196 28227 0.483796 + . ID=CGI_10005857; scaffold41972 TRF Tandem_Repeat 28196 28227 64 + . . scaffold41972 GLEAN mRNA 34234 34678 0.737819 + . ID=CGI_10005858; scaffold41972 TRF Tandem_Repeat 34234 34678 239 + . . scaffold41972 GLEAN mRNA 80470 80562 0.89236 + . ID=CGI_10005860; scaffold41972 TRF Tandem_Repeat 80470 80562 132 + . . scaffold41972 GLEAN mRNA 85186 85228 0.89236 + . ID=CGI_10005860; scaffold41972 TRF Tandem_Repeat 85186 85228 58 + . . scaffold41972 GLEAN mRNA 97737 97892 0.620107 - . ID=CGI_10005861; scaffold41972 WUBlastX LINE_L1 97737 97892 56 - . . scaffold41972 GLEAN mRNA 97737 97892 0.240877 + . ID=CGI_10005862; scaffold41972 WUBlastX LINE_L1 97737 97892 56 - . . scaffold41972 GLEAN mRNA 107822 107932 0.240877 + . ID=CGI_10005862; scaffold41972 TRF Tandem_Repeat 107822 107932 170 + . . scaffold41972 GLEAN mRNA 127259 127295 0.240877 + . ID=CGI_10005862; scaffold41972 TRF Tandem_Repeat 127259 127295 74 + . . scaffold41972 GLEAN mRNA 127760 127825 0.240877 + . ID=CGI_10005862; scaffold41972 TRF Tandem_Repeat 127760 127825 109 + . . scaffold41972 GLEAN mRNA 130105 130318 0.240877 + . ID=CGI_10005862; scaffold41972 TRF Tandem_Repeat 130105 130318 412 + . . scaffold41972 GLEAN mRNA 131304 131986 0.240877 + . ID=CGI_10005862; scaffold41972 TRF Tandem_Repeat 131304 131986 909 + . . scaffold41972 GLEAN mRNA 138230 138270 0.240877 + . ID=CGI_10005862; scaffold41972 TRF Tandem_Repeat 138230 138270 82 + . . scaffold595 GLEAN mRNA 66630 66708 0.989948 - . ID=CGI_10005863; scaffold595 TRF Tandem_Repeat 66630 66708 158 + . . scaffold595 GLEAN mRNA 71490 71515 0.989948 - . ID=CGI_10005863; scaffold595 TRF Tandem_Repeat 71490 71515 52 + . . scaffold595 GLEAN mRNA 92576 93196 0.989948 - . ID=CGI_10005863; scaffold595 WUBlastX LTR_Ngaro 92576 93196 84 - . . scaffold595 GLEAN mRNA 91762 92733 0.989948 - . ID=CGI_10005863; scaffold595 WUBlastX LTR_Ngaro 91762 92733 432 - . . scaffold595 GLEAN mRNA 91780 92553 0.989948 - . ID=CGI_10005863; scaffold595 WUBlastX LTR_Ngaro 91780 92553 509 - . . scaffold595 GLEAN mRNA 92576 93316 0.989948 - . ID=CGI_10005863; scaffold595 WUBlastX LTR_Ngaro 92576 93316 80 - . . scaffold595 GLEAN mRNA 90722 90997 0.989948 - . ID=CGI_10005863; scaffold595 WUBlastX LTR_Ngaro 90722 90997 54 - . . scaffold595 GLEAN mRNA 90081 90806 0.989948 - . ID=CGI_10005863; scaffold595 WUBlastX LTR_Ngaro 90081 90806 302 - . . scaffold595 GLEAN mRNA 91263 91796 0.989948 - . ID=CGI_10005863; scaffold595 WUBlastX LTR_Ngaro 91263 91796 413 - . . scaffold595 GLEAN mRNA 90988 91254 0.989948 - . ID=CGI_10005863; scaffold595 WUBlastX LTR_Ngaro 90988 91254 170 - . . scaffold595 GLEAN mRNA 86308 86574 0.989948 - . ID=CGI_10005863; scaffold595 WUBlastX LINE_RTE-X 86308 86574 61 - . . scaffold41968 GLEAN mRNA 13464 13926 0.287765 + . ID=CGI_10005864; scaffold41968 TRF Tandem_Repeat 13464 13926 809 + . . scaffold41968 GLEAN mRNA 93580 93612 0.763205 + . ID=CGI_10005870; scaffold41968 TRF Tandem_Repeat 93580 93612 66 + . . scaffold41968 GLEAN mRNA 107368 107463 0.999083 + . ID=CGI_10005872; scaffold41968 TRF Tandem_Repeat 107368 107463 77 + . . scaffold41968 GLEAN mRNA 125749 125811 0.999349 - . ID=CGI_10005874; scaffold41968 TRF Tandem_Repeat 125749 125811 126 + . . scaffold41968 GLEAN mRNA 129468 129535 0.999349 - . ID=CGI_10005874; scaffold41968 TRF Tandem_Repeat 129468 129535 136 + . . scaffold41970 GLEAN mRNA 4581 4634 1 + . ID=CGI_10005881; scaffold41970 TRF Tandem_Repeat 4581 4634 108 + . . scaffold41970 GLEAN mRNA 4634 4720 1 + . ID=CGI_10005881; scaffold41970 TRF Tandem_Repeat 4634 4720 158 + . . scaffold41970 GLEAN mRNA 33181 33318 0.912364 - . ID=CGI_10005882; scaffold41970 TRF Tandem_Repeat 33181 33318 125 + . . scaffold41970 GLEAN mRNA 37629 38153 0.912364 - . ID=CGI_10005882; scaffold41970 WUBlastX LINE_L1-Tx1 37629 38153 143 - . . scaffold41970 GLEAN mRNA 37863 38303 0.912364 - . ID=CGI_10005882; scaffold41970 WUBlastX LINE_L1 37863 38303 51 - . . scaffold41970 GLEAN mRNA 59190 59360 0.833981 + . ID=CGI_10005885; scaffold41970 TRF Tandem_Repeat 59190 59360 333 + . . scaffold41970 GLEAN mRNA 67574 67634 0.863497 - . ID=CGI_10005886; scaffold41970 TRF Tandem_Repeat 67574 67634 97 + . . scaffold41970 GLEAN mRNA 70760 71140 0.996819 + . ID=CGI_10005887; scaffold41970 WUBlastX LINE_RTE-BovB 70760 71140 33 + . . scaffold41970 GLEAN mRNA 83400 83428 0.999949 - . ID=CGI_10005888; scaffold41970 TRF Tandem_Repeat 83400 83428 58 + . . scaffold41970 GLEAN mRNA 112668 112696 0.999544 - . ID=CGI_10005890; scaffold41970 TRF Tandem_Repeat 112668 112696 58 + . . scaffold41974 GLEAN mRNA 4978 5062 0.405305 - . ID=CGI_10005902; scaffold41974 TRF Tandem_Repeat 4978 5062 152 + . . scaffold41974 GLEAN mRNA 26164 26212 0.405305 - . ID=CGI_10005902; scaffold41974 TRF Tandem_Repeat 26164 26212 89 + . . scaffold41974 GLEAN mRNA 30787 30930 0.405305 - . ID=CGI_10005902; scaffold41974 WUBlastX LINE_RTE-BovB 30787 30930 79 + . . scaffold41974 GLEAN mRNA 30891 31721 0.405305 - . ID=CGI_10005902; scaffold41974 WUBlastX LINE_RTE-BovB 30891 31721 72 + . . scaffold41974 GLEAN mRNA 30903 31523 0.405305 - . ID=CGI_10005902; scaffold41974 WUBlastX LINE_RTE-BovB 30903 31523 283 + . . scaffold41974 GLEAN mRNA 49227 49259 0.792496 + . ID=CGI_10005903; scaffold41974 TRF Tandem_Repeat 49227 49259 57 + . . scaffold41974 GLEAN mRNA 55712 55766 0.792496 + . ID=CGI_10005903; scaffold41974 TRF Tandem_Repeat 55712 55766 110 + . . scaffold41974 GLEAN mRNA 83192 83255 0.300707 + . ID=CGI_10005904; scaffold41974 TRF Tandem_Repeat 83192 83255 128 + . . scaffold41974 GLEAN mRNA 88456 88511 0.300707 + . ID=CGI_10005904; scaffold41974 TRF Tandem_Repeat 88456 88511 112 + . . scaffold41974 GLEAN mRNA 89035 89088 0.300707 + . ID=CGI_10005904; scaffold41974 TRF Tandem_Repeat 89035 89088 63 + . . scaffold41974 GLEAN mRNA 95767 95820 0.987142 + . ID=CGI_10005906; scaffold41974 TRF Tandem_Repeat 95767 95820 65 + . . scaffold41974 GLEAN mRNA 100578 100639 0.987142 + . ID=CGI_10005906; scaffold41974 TRF Tandem_Repeat 100578 100639 124 + . . scaffold41974 GLEAN mRNA 97572 98467 0.987142 + . ID=CGI_10005906; scaffold41974 TRF Tandem_Repeat 97572 98467 1031 + . . scaffold41998 GLEAN mRNA 2588 2770 0.998942 - . ID=CGI_10005908; scaffold41998 TRF Tandem_Repeat 2588 2770 271 + . . scaffold41998 GLEAN mRNA 2719 2978 0.998942 - . ID=CGI_10005908; scaffold41998 TRF Tandem_Repeat 2719 2978 197 + . . scaffold41998 GLEAN mRNA 2769 2914 0.998942 - . ID=CGI_10005908; scaffold41998 TRF Tandem_Repeat 2769 2914 222 + . . scaffold41998 GLEAN mRNA 2588 3358 0.998942 - . ID=CGI_10005908; scaffold41998 TRF Tandem_Repeat 2588 3358 953 + . . scaffold41998 GLEAN mRNA 2912 3358 0.998942 - . ID=CGI_10005908; scaffold41998 TRF Tandem_Repeat 2912 3358 774 + . . scaffold41998 GLEAN mRNA 3673 3736 0.998942 - . ID=CGI_10005908; scaffold41998 TRF Tandem_Repeat 3673 3736 128 + . . scaffold41998 GLEAN mRNA 3808 3834 0.998942 - . ID=CGI_10005908; scaffold41998 TRF Tandem_Repeat 3808 3834 54 + . . scaffold41998 GLEAN mRNA 4964 4998 0.998942 - . ID=CGI_10005908; scaffold41998 TRF Tandem_Repeat 4964 4998 70 + . . scaffold41998 GLEAN mRNA 6394 6418 0.995 - . ID=CGI_10005909; scaffold41998 TRF Tandem_Repeat 6394 6418 50 + . . scaffold41998 GLEAN mRNA 41231 41262 0.999949 - . ID=CGI_10005911; scaffold41998 TRF Tandem_Repeat 41231 41262 64 + . . scaffold41998 GLEAN mRNA 41658 42056 0.999949 - . ID=CGI_10005911; scaffold41998 WUBlastX LINE_RTE-BovB 41658 42056 297 - . . scaffold41998 GLEAN mRNA 42038 44089 0.999949 - . ID=CGI_10005911; scaffold41998 WUBlastX LINE_RTE-BovB 42038 44089 1798 - . . scaffold41998 GLEAN mRNA 94177 94239 0.648527 - . ID=CGI_10005914; scaffold41998 TRF Tandem_Repeat 94177 94239 126 + . . scaffold41998 GLEAN mRNA 116075 116112 0.544402 + . ID=CGI_10005915; scaffold41998 TRF Tandem_Repeat 116075 116112 51 + . . scaffold41998 GLEAN mRNA 120320 120344 0.544402 + . ID=CGI_10005915; scaffold41998 TRF Tandem_Repeat 120320 120344 50 + . . scaffold41998 GLEAN mRNA 120320 120344 0.683375 - . ID=CGI_10005916; scaffold41998 TRF Tandem_Repeat 120320 120344 50 + . . scaffold1199 GLEAN mRNA 47715 47879 0.592263 - . ID=CGI_10005923; scaffold1199 WUBlastX RC_Helitron 47715 47879 35 - . . scaffold1199 GLEAN mRNA 48449 49108 0.592263 - . ID=CGI_10005923; scaffold1199 WUBlastX DNA_Kolobok 48449 49108 67 - . . scaffold1199 GLEAN mRNA 46728 46946 0.592263 - . ID=CGI_10005923; scaffold1199 WUBlastX RC_Helitron 46728 46946 48 - . . scaffold1199 GLEAN mRNA 47908 48087 0.592263 - . ID=CGI_10005923; scaffold1199 WUBlastX RC_Helitron 47908 48087 29 - . . scaffold1199 GLEAN mRNA 52606 52663 0.636686 - . ID=CGI_10005924; scaffold1199 TRF Tandem_Repeat 52606 52663 116 + . . scaffold1199 GLEAN mRNA 106604 107008 0.490912 + . ID=CGI_10005927; scaffold1199 WUBlastX DNA_IS4EU 106604 107008 62 + . . scaffold1199 GLEAN mRNA 122042 122097 0.255033 - . ID=CGI_10005928; scaffold1199 TRF Tandem_Repeat 122042 122097 112 + . . scaffold1199 GLEAN mRNA 133279 133315 0.999826 + . ID=CGI_10005931; scaffold1199 TRF Tandem_Repeat 133279 133315 74 + . . scaffold1199 GLEAN mRNA 137995 138056 0.999826 + . ID=CGI_10005931; scaffold1199 TRF Tandem_Repeat 137995 138056 124 + . . scaffold1199 GLEAN mRNA 141064 141372 0.573317 - . ID=CGI_10005932; scaffold1199 WUBlastX DNA_IS4EU 141064 141450 59 - . . scaffold1519 GLEAN mRNA 15367 15427 0.999942 + . ID=CGI_10005933; scaffold1519 TRF Tandem_Repeat 15367 15427 113 + . . scaffold1519 GLEAN mRNA 15518 15550 0.999942 + . ID=CGI_10005933; scaffold1519 TRF Tandem_Repeat 15518 15550 57 + . . scaffold1519 GLEAN mRNA 19055 19088 0.999942 + . ID=CGI_10005933; scaffold1519 TRF Tandem_Repeat 19055 19088 52 + . . scaffold42060 GLEAN mRNA 25138 25189 0.999624 + . ID=CGI_10005937; scaffold42060 TRF Tandem_Repeat 25138 25189 95 + . . scaffold42060 GLEAN mRNA 87534 87638 0.999949 - . ID=CGI_10005940; scaffold42060 TRF Tandem_Repeat 87534 87638 192 + . . scaffold42060 GLEAN mRNA 87933 87975 0.999949 - . ID=CGI_10005940; scaffold42060 TRF Tandem_Repeat 87933 87975 86 + . . scaffold42060 GLEAN mRNA 88905 89671 0.999949 - . ID=CGI_10005940; scaffold42060 TRF Tandem_Repeat 88905 89671 961 + . . scaffold42060 GLEAN mRNA 95641 95680 0.999949 - . ID=CGI_10005940; scaffold42060 TRF Tandem_Repeat 95641 95680 53 + . . scaffold42060 GLEAN mRNA 96274 96666 0.999949 - . ID=CGI_10005940; scaffold42060 TRF Tandem_Repeat 96274 96666 354 + . . scaffold42060 GLEAN mRNA 96274 96666 0.999949 - . ID=CGI_10005940; scaffold42060 TRF Tandem_Repeat 96274 96666 464 + . . scaffold42060 GLEAN mRNA 96274 96657 0.999949 - . ID=CGI_10005940; scaffold42060 TRF Tandem_Repeat 96274 96657 498 + . . scaffold42060 GLEAN mRNA 97315 97573 0.999949 - . ID=CGI_10005940; scaffold42060 TRF Tandem_Repeat 97315 97573 304 + . . scaffold42060 GLEAN mRNA 97315 97573 0.999949 - . ID=CGI_10005940; scaffold42060 TRF Tandem_Repeat 97315 97573 340 + . . scaffold42060 GLEAN mRNA 97315 97573 0.999949 - . ID=CGI_10005940; scaffold42060 TRF Tandem_Repeat 97315 97573 322 + . . scaffold42060 GLEAN mRNA 112350 112393 0.999949 - . ID=CGI_10005940; scaffold42060 TRF Tandem_Repeat 112350 112393 88 + . . scaffold42060 GLEAN mRNA 137269 137308 0.999949 - . ID=CGI_10005940; scaffold42060 TRF Tandem_Repeat 137269 137308 80 + . . scaffold1260 GLEAN mRNA 101169 101205 1 + . ID=CGI_10005943; scaffold1260 TRF Tandem_Repeat 101169 101205 74 + . . scaffold1260 GLEAN mRNA 101529 101876 1 + . ID=CGI_10005943; scaffold1260 WUBlastX DNA_Academ 101529 101876 27 - . . scaffold1260 GLEAN mRNA 101737 102108 1 + . ID=CGI_10005943; scaffold1260 WUBlastX DNA_Academ 101737 102108 77 - . . scaffold1260 GLEAN mRNA 101833 102240 1 + . ID=CGI_10005943; scaffold1260 WUBlastX DNA_Academ 101833 102240 134 - . . scaffold1260 GLEAN mRNA 101818 102102 1 + . ID=CGI_10005943; scaffold1260 WUBlastX DNA_Academ 101818 102102 144 - . . scaffold1260 GLEAN mRNA 102082 102618 1 + . ID=CGI_10005943; scaffold1260 WUBlastX DNA_Academ 102082 102618 91 - . . scaffold1260 GLEAN mRNA 103026 103310 1 + . ID=CGI_10005943; scaffold1260 WUBlastX DNA_Academ 103026 103310 62 - . . scaffold1260 GLEAN mRNA 101529 101876 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 101529 101876 27 - . . scaffold1260 GLEAN mRNA 101737 102108 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 101737 102108 77 - . . scaffold1260 GLEAN mRNA 101833 102240 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 101833 102240 134 - . . scaffold1260 GLEAN mRNA 101818 102102 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 101818 102102 144 - . . scaffold1260 GLEAN mRNA 102082 102618 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 102082 102618 91 - . . scaffold1260 GLEAN mRNA 103026 103310 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 103026 103310 62 - . . scaffold1475 GLEAN mRNA 66447 66495 0.668023 - . ID=CGI_10005952; scaffold1475 TRF Tandem_Repeat 66447 66495 98 + . . scaffold1475 GLEAN mRNA 109002 109889 0.650413 - . ID=CGI_10005953; scaffold1475 WUBlastX LINE_L1-Tx1 109002 109889 72 - . . scaffold1475 GLEAN mRNA 136341 136397 0.551268 - . ID=CGI_10005954; scaffold1475 TRF Tandem_Repeat 136341 136397 107 + . . scaffold1475 GLEAN mRNA 137228 137278 0.551268 - . ID=CGI_10005954; scaffold1475 TRF Tandem_Repeat 137228 137278 50 + . . scaffold1396 GLEAN mRNA 73172 73211 0.703487 - . ID=CGI_10005961; scaffold1396 TRF Tandem_Repeat 73172 73211 80 + . . scaffold944 GLEAN mRNA 53351 53421 0.999957 + . ID=CGI_10005967; scaffold944 TRF Tandem_Repeat 53351 53421 135 + . . scaffold41982 GLEAN mRNA 10259 10286 0.634216 + . ID=CGI_10005969; scaffold41982 TRF Tandem_Repeat 10259 10286 56 + . . scaffold41982 GLEAN mRNA 20250 20284 0.634216 + . ID=CGI_10005969; scaffold41982 TRF Tandem_Repeat 20250 20284 54 + . . scaffold41982 GLEAN mRNA 28693 28913 0.634216 + . ID=CGI_10005969; scaffold41982 TRF Tandem_Repeat 28693 28913 193 + . . scaffold41982 GLEAN mRNA 61533 62231 0.998699 + . ID=CGI_10005971; scaffold41982 TRF Tandem_Repeat 61533 62231 439 + . . scaffold41982 GLEAN mRNA 61525 62231 0.998699 + . ID=CGI_10005971; scaffold41982 TRF Tandem_Repeat 61525 62231 484 + . . scaffold41982 GLEAN mRNA 63794 63823 0.998699 + . ID=CGI_10005971; scaffold41982 TRF Tandem_Repeat 63794 63823 51 + . . scaffold41982 GLEAN mRNA 68195 68196 0.820931 - . ID=CGI_10005972; scaffold41982 TRF Tandem_Repeat 68157 68196 80 + . . scaffold41982 GLEAN mRNA 72054 72091 0.820931 - . ID=CGI_10005972; scaffold41982 TRF Tandem_Repeat 72054 72091 76 + . . scaffold41982 GLEAN mRNA 91501 91552 1 + . ID=CGI_10005974; scaffold41982 TRF Tandem_Repeat 91501 91552 104 + . . scaffold41982 GLEAN mRNA 109470 109518 0.999351 + . ID=CGI_10005976; scaffold41982 TRF Tandem_Repeat 109470 109518 98 + . . scaffold1180 GLEAN mRNA 16762 17959 0.485788 + . ID=CGI_10005979; scaffold1180 TRF Tandem_Repeat 16762 17959 1607 + . . scaffold1180 GLEAN mRNA 23575 23790 0.485788 + . ID=CGI_10005979; scaffold1180 WUBlastX LTR_DIRS 23575 23790 44 + . . scaffold1180 GLEAN mRNA 23834 23986 0.485788 + . ID=CGI_10005979; scaffold1180 WUBlastX LTR_DIRS 23834 23986 22 + . . scaffold1180 GLEAN mRNA 25797 26234 0.485788 + . ID=CGI_10005979; scaffold1180 WUBlastX LTR_DIRS 25797 26234 101 + . . scaffold1180 GLEAN mRNA 24209 24349 0.485788 + . ID=CGI_10005979; scaffold1180 WUBlastX LTR_DIRS 24209 24349 66 + . . scaffold1180 GLEAN mRNA 25043 25417 0.485788 + . ID=CGI_10005979; scaffold1180 WUBlastX LTR_DIRS 25043 25417 90 + . . scaffold1180 GLEAN mRNA 24610 24945 0.485788 + . ID=CGI_10005979; scaffold1180 WUBlastX LTR_DIRS 24610 24945 171 + . . scaffold1180 GLEAN mRNA 25727 25783 0.485788 + . ID=CGI_10005979; scaffold1180 WUBlastX LTR_DIRS 25727 25783 40 + . . scaffold1180 GLEAN mRNA 24369 24659 0.485788 + . ID=CGI_10005979; scaffold1180 WUBlastX LTR_DIRS 24369 24659 93 + . . scaffold1180 GLEAN mRNA 38282 38309 0.485788 + . ID=CGI_10005979; scaffold1180 TRF Tandem_Repeat 38282 38309 56 + . . scaffold1180 GLEAN mRNA 38311 38420 0.485788 + . ID=CGI_10005979; scaffold1180 TRF Tandem_Repeat 38311 38420 184 + . . scaffold1180 GLEAN mRNA 41040 41075 0.485788 + . ID=CGI_10005979; scaffold1180 TRF Tandem_Repeat 41040 41075 63 + . . scaffold1180 GLEAN mRNA 48241 49037 0.998657 + . ID=CGI_10005980; scaffold1180 TRF Tandem_Repeat 48241 49037 1398 + . . scaffold1180 GLEAN mRNA 78909 78942 1 - . ID=CGI_10005983; scaffold1180 TRF Tandem_Repeat 78909 78942 68 + . . scaffold1180 GLEAN mRNA 102505 102539 0.99843 - . ID=CGI_10005985; scaffold1180 TRF Tandem_Repeat 102505 102539 61 + . . scaffold1180 GLEAN mRNA 106913 107622 0.99843 - . ID=CGI_10005985; scaffold1180 TRF Tandem_Repeat 106913 107622 1119 + . . scaffold1813 GLEAN mRNA 10963 11013 0.869721 + . ID=CGI_10005987; scaffold1813 TRF Tandem_Repeat 10963 11013 102 + . . scaffold1813 GLEAN mRNA 18318 18470 0.392215 + . ID=CGI_10005988; scaffold1813 TRF Tandem_Repeat 18318 18470 200 + . . scaffold1813 GLEAN mRNA 20718 20753 0.392215 + . ID=CGI_10005988; scaffold1813 TRF Tandem_Repeat 20718 20753 63 + . . scaffold1813 GLEAN mRNA 40869 40941 0.702385 + . ID=CGI_10005990; scaffold1813 TRF Tandem_Repeat 40869 40941 101 + . . scaffold1813 GLEAN mRNA 41352 41464 0.702385 + . ID=CGI_10005990; scaffold1813 TRF Tandem_Repeat 41352 41464 174 + . . scaffold1813 GLEAN mRNA 39487 40065 0.702385 + . ID=CGI_10005990; scaffold1813 WUBlastX LINE_L1 39487 40065 42 + . . scaffold1813 GLEAN mRNA 112669 113073 0.957305 + . ID=CGI_10005994; scaffold1813 WUBlastX LINE_RTE-X 112669 113073 27 - . . scaffold1813 GLEAN mRNA 113159 113311 0.957305 + . ID=CGI_10005994; scaffold1813 WUBlastX LINE_RTE-X 113159 113311 22 - . . scaffold1813 GLEAN mRNA 113251 113511 0.957305 + . ID=CGI_10005994; scaffold1813 WUBlastX LINE_RTE-X 113251 113511 28 - . . scaffold1813 GLEAN mRNA 113201 113461 0.957305 + . ID=CGI_10005994; scaffold1813 WUBlastX LINE_RTE-X 113201 113461 27 - . . scaffold1813 GLEAN mRNA 113302 113505 0.957305 + . ID=CGI_10005994; scaffold1813 WUBlastX LINE_L2 113302 113505 35 - . . scaffold1813 GLEAN mRNA 112714 113055 0.957305 + . ID=CGI_10005994; scaffold1813 WUBlastX LINE_RTE-X 112714 113055 60 - . . scaffold42046 GLEAN mRNA 20888 20917 1 - . ID=CGI_10005999; scaffold42046 TRF Tandem_Repeat 20888 20917 60 + . . scaffold42046 GLEAN mRNA 55211 56147 1 + . ID=CGI_10006002; scaffold42046 TRF Tandem_Repeat 55211 56147 1142 + . . scaffold42046 GLEAN mRNA 55211 56147 1 + . ID=CGI_10006002; scaffold42046 TRF Tandem_Repeat 55211 56147 1086 + . . scaffold42046 GLEAN mRNA 60825 60885 1 + . ID=CGI_10006002; scaffold42046 TRF Tandem_Repeat 60825 60885 61 + . . scaffold42046 GLEAN mRNA 60824 60885 1 + . ID=CGI_10006002; scaffold42046 TRF Tandem_Repeat 60824 60885 54 + . . scaffold42046 GLEAN mRNA 61055 62232 1 + . ID=CGI_10006002; scaffold42046 TRF Tandem_Repeat 61055 62232 1728 + . . scaffold42046 GLEAN mRNA 63829 64083 1 + . ID=CGI_10006002; scaffold42046 TRF Tandem_Repeat 63829 64083 280 + . . scaffold42046 GLEAN mRNA 57816 58520 1 + . ID=CGI_10006002; scaffold42046 WUBlastX LINE_RTE-BovB 57816 58520 61 + . . scaffold42046 GLEAN mRNA 57960 59843 1 + . ID=CGI_10006002; scaffold42046 WUBlastX LINE_L1-Tx1 57960 59843 592 + . . scaffold42046 GLEAN mRNA 80825 81088 0.352028 - . ID=CGI_10006003; scaffold42046 WUBlastX DNA_Crypton 80825 81088 110 - . . scaffold42046 GLEAN mRNA 81096 81380 0.352028 - . ID=CGI_10006003; scaffold42046 WUBlastX DNA_Crypton 81096 81380 95 - . . scaffold42046 GLEAN mRNA 82160 82221 0.352028 - . ID=CGI_10006003; scaffold42046 TRF Tandem_Repeat 82160 82221 124 + . . scaffold42046 GLEAN mRNA 83334 83391 0.352028 - . ID=CGI_10006003; scaffold42046 TRF Tandem_Repeat 83334 83391 116 + . . scaffold42046 GLEAN mRNA 84494 84679 0.352028 - . ID=CGI_10006003; scaffold42046 TRF Tandem_Repeat 84494 84679 246 + . . scaffold42046 GLEAN mRNA 86003 86099 0.352028 - . ID=CGI_10006003; scaffold42046 TRF Tandem_Repeat 86003 86099 78 + . . scaffold42046 GLEAN mRNA 87456 87623 0.352028 - . ID=CGI_10006003; scaffold42046 TRF Tandem_Repeat 87456 87623 207 + . . scaffold42046 GLEAN mRNA 91512 91846 0.352028 - . ID=CGI_10006003; scaffold42046 TRF Tandem_Repeat 91512 91846 609 + . . scaffold42046 GLEAN mRNA 95288 95337 0.352028 - . ID=CGI_10006003; scaffold42046 TRF Tandem_Repeat 95288 95337 100 + . . scaffold700 GLEAN mRNA 95685 95733 0.999674 - . ID=CGI_10006011; scaffold700 TRF Tandem_Repeat 95685 95733 98 + . . scaffold700 GLEAN mRNA 99214 99916 0.999674 - . ID=CGI_10006011; scaffold700 TRF Tandem_Repeat 99214 99916 585 + . . scaffold700 GLEAN mRNA 99341 99913 0.999674 - . ID=CGI_10006011; scaffold700 TRF Tandem_Repeat 99341 99913 713 + . . scaffold700 GLEAN mRNA 99355 99910 0.999674 - . ID=CGI_10006011; scaffold700 TRF Tandem_Repeat 99355 99910 785 + . . scaffold700 GLEAN mRNA 102476 102888 0.999674 - . ID=CGI_10006011; scaffold700 TRF Tandem_Repeat 102476 102888 718 + . . scaffold42032 GLEAN mRNA 40627 40834 0.999526 + . ID=CGI_10006014; scaffold42032 TRF Tandem_Repeat 40627 40834 335 + . . scaffold42032 GLEAN mRNA 45503 45678 0.999526 + . ID=CGI_10006014; scaffold42032 TRF Tandem_Repeat 45503 45678 129 + . . scaffold42032 GLEAN mRNA 50710 50800 0.999526 + . ID=CGI_10006014; scaffold42032 TRF Tandem_Repeat 50710 50800 146 + . . scaffold42032 GLEAN mRNA 50766 50855 0.999526 + . ID=CGI_10006014; scaffold42032 TRF Tandem_Repeat 50766 50855 99 + . . scaffold42032 GLEAN mRNA 52298 52404 0.999526 + . ID=CGI_10006014; scaffold42032 TRF Tandem_Repeat 52298 52404 142 + . . scaffold42032 GLEAN mRNA 55253 55313 0.999526 + . ID=CGI_10006014; scaffold42032 TRF Tandem_Repeat 55253 55313 122 + . . scaffold42032 GLEAN mRNA 66408 66469 0.999526 + . ID=CGI_10006014; scaffold42032 TRF Tandem_Repeat 66408 66469 124 + . . scaffold42032 GLEAN mRNA 68808 68856 0.999526 + . ID=CGI_10006014; scaffold42032 TRF Tandem_Repeat 68808 68856 91 + . . scaffold42032 GLEAN mRNA 89616 89672 0.999676 - . ID=CGI_10006015; scaffold42032 TRF Tandem_Repeat 89616 89672 114 + . . scaffold42032 GLEAN mRNA 90013 90062 0.999676 - . ID=CGI_10006015; scaffold42032 TRF Tandem_Repeat 90013 90062 100 + . . scaffold42032 GLEAN mRNA 91407 91452 0.999676 - . ID=CGI_10006015; scaffold42032 TRF Tandem_Repeat 91407 91452 83 + . . scaffold42032 GLEAN mRNA 93541 93598 0.999676 - . ID=CGI_10006015; scaffold42032 TRF Tandem_Repeat 93541 93598 98 + . . scaffold42032 GLEAN mRNA 94631 94670 0.999676 - . ID=CGI_10006015; scaffold42032 TRF Tandem_Repeat 94631 94670 80 + . . scaffold42032 GLEAN mRNA 94819 94871 0.999676 - . ID=CGI_10006015; scaffold42032 TRF Tandem_Repeat 94819 94871 106 + . . scaffold42032 GLEAN mRNA 100106 100157 1 - . ID=CGI_10006016; scaffold42032 TRF Tandem_Repeat 100106 100157 63 + . . scaffold42032 GLEAN mRNA 101606 101635 1 - . ID=CGI_10006016; scaffold42032 TRF Tandem_Repeat 101606 101635 60 + . . scaffold42040 GLEAN mRNA 17454 17485 0.999409 - . ID=CGI_10006020; scaffold42040 TRF Tandem_Repeat 17454 17485 64 + . . scaffold42040 GLEAN mRNA 50257 50591 0.693728 + . ID=CGI_10006023; scaffold42040 TRF Tandem_Repeat 50257 50591 257 + . . scaffold42040 GLEAN mRNA 51834 51896 0.693728 + . ID=CGI_10006023; scaffold42040 TRF Tandem_Repeat 51834 51896 56 + . . scaffold42040 GLEAN mRNA 85968 85999 1 - . ID=CGI_10006025; scaffold42040 TRF Tandem_Repeat 85968 85999 55 + . . scaffold42040 GLEAN mRNA 88198 88539 1 - . ID=CGI_10006025; scaffold42040 TRF Tandem_Repeat 88198 88539 283 + . . scaffold42040 GLEAN mRNA 89596 89739 1 - . ID=CGI_10006025; scaffold42040 TRF Tandem_Repeat 89596 89739 164 + . . scaffold42040 GLEAN mRNA 89580 89731 1 - . ID=CGI_10006025; scaffold42040 TRF Tandem_Repeat 89580 89731 90 + . . scaffold42040 GLEAN mRNA 89571 89743 1 - . ID=CGI_10006025; scaffold42040 TRF Tandem_Repeat 89571 89743 195 + . . scaffold42030 GLEAN mRNA 14680 14823 0.965896 + . ID=CGI_10006041; scaffold42030 WUBlastX LTR_Gypsy 14680 14823 26 + . . scaffold42030 GLEAN mRNA 14224 14346 0.965896 + . ID=CGI_10006041; scaffold42030 WUBlastX LTR_Gypsy 14224 14346 31 + . . scaffold42030 GLEAN mRNA 30487 30532 0.672352 + . ID=CGI_10006042; scaffold42030 TRF Tandem_Repeat 30487 30532 92 + . . scaffold42030 GLEAN mRNA 36524 36576 0.672352 + . ID=CGI_10006043; scaffold42030 TRF Tandem_Repeat 36524 36576 106 + . . scaffold42030 GLEAN mRNA 78965 80656 0.98897 + . ID=CGI_10006046; scaffold42030 WUBlastX LINE_RTE-X 78965 80656 719 + . . scaffold42030 GLEAN mRNA 78914 79243 0.98897 + . ID=CGI_10006046; scaffold42030 WUBlastX LINE_CR1 78914 79243 80 + . . scaffold42030 GLEAN mRNA 77178 77630 0.98897 + . ID=CGI_10006046; scaffold42030 WUBlastX LINE_CR1 77178 77630 79 + . . scaffold42030 GLEAN mRNA 78622 78963 0.98897 + . ID=CGI_10006046; scaffold42030 WUBlastX LINE_RTE-X 78622 78963 52 + . . scaffold42030 GLEAN mRNA 77289 78563 0.98897 + . ID=CGI_10006046; scaffold42030 WUBlastX LINE_RTE-X 77289 78563 223 + . . scaffold42030 GLEAN mRNA 82142 82308 0.98897 + . ID=CGI_10006046; scaffold42030 TRF Tandem_Repeat 82142 82308 145 + . . scaffold42030 GLEAN mRNA 82142 82288 0.98897 + . ID=CGI_10006046; scaffold42030 TRF Tandem_Repeat 82142 82288 156 + . . scaffold42030 GLEAN mRNA 82945 83201 0.98897 + . ID=CGI_10006046; scaffold42030 TRF Tandem_Repeat 82945 83201 212 + . . scaffold42030 GLEAN mRNA 82953 83229 0.98897 + . ID=CGI_10006046; scaffold42030 TRF Tandem_Repeat 82953 83229 396 + . . scaffold42030 GLEAN mRNA 85038 85123 0.98897 + . ID=CGI_10006046; scaffold42030 TRF Tandem_Repeat 85038 85123 91 + . . scaffold42030 GLEAN mRNA 86585 86712 0.98897 + . ID=CGI_10006046; scaffold42030 TRF Tandem_Repeat 86585 86712 94 + . . scaffold42030 GLEAN mRNA 86640 86730 0.98897 + . ID=CGI_10006046; scaffold42030 TRF Tandem_Repeat 86640 86730 137 + . . scaffold42030 GLEAN mRNA 93703 93748 0.98897 + . ID=CGI_10006046; scaffold42030 TRF Tandem_Repeat 93703 93748 92 + . . scaffold42022 GLEAN mRNA 6406 6454 0.998223 + . ID=CGI_10006048; scaffold42022 TRF Tandem_Repeat 6406 6454 98 + . . scaffold42022 GLEAN mRNA 6950 6998 0.998223 + . ID=CGI_10006048; scaffold42022 TRF Tandem_Repeat 6950 6998 98 + . . scaffold42022 GLEAN mRNA 11296 11338 0.998223 + . ID=CGI_10006048; scaffold42022 TRF Tandem_Repeat 11296 11338 86 + . . scaffold42022 GLEAN mRNA 34090 34206 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX LINE_L2 34090 34206 22 + . . scaffold42022 GLEAN mRNA 45207 45335 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX DNA_IS4EU 45207 45335 29 - . . scaffold42022 GLEAN mRNA 44969 45058 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX DNA_IS4EU 44969 45058 30 - . . scaffold42022 GLEAN mRNA 45151 45198 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX DNA_IS4EU 45151 45198 21 - . . scaffold42022 GLEAN mRNA 44622 44783 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX DNA_Kolobok-IS4 44622 44783 53 - . . scaffold42022 GLEAN mRNA 33701 34054 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX LINE_L2 33701 34054 106 + . . scaffold42022 GLEAN mRNA 34057 34272 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX LINE_L2 34057 34272 22 + . . scaffold42022 GLEAN mRNA 43036 43983 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX DNA_IS4EU 43036 43983 218 + . . scaffold42022 GLEAN mRNA 43979 44179 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX DNA_IS4EU 43979 44179 111 + . . scaffold42022 GLEAN mRNA 44176 44361 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX DNA_IS4EU 44176 44361 141 + . . scaffold42022 GLEAN mRNA 45207 45305 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX DNA_IS4EU 45207 45305 32 - . . scaffold42022 GLEAN mRNA 68572 68625 0.996805 - . ID=CGI_10006051; scaffold42022 TRF Tandem_Repeat 68572 68625 56 + . . scaffold1317 GLEAN mRNA 12422 12475 0.999842 - . ID=CGI_10006053; scaffold1317 TRF Tandem_Repeat 12422 12475 108 + . . scaffold1317 GLEAN mRNA 13362 13999 0.999842 - . ID=CGI_10006053; scaffold1317 TRF Tandem_Repeat 13362 13999 956 + . . scaffold1317 GLEAN mRNA 17308 17808 0.999842 - . ID=CGI_10006053; scaffold1317 TRF Tandem_Repeat 17308 17808 356 + . . scaffold1317 GLEAN mRNA 17308 17765 0.999842 - . ID=CGI_10006053; scaffold1317 TRF Tandem_Repeat 17308 17765 647 + . . scaffold1317 GLEAN mRNA 41036 41126 0.999949 + . ID=CGI_10006054; scaffold1317 TRF Tandem_Repeat 41036 41126 146 + . . scaffold1317 GLEAN mRNA 41092 41181 0.999949 + . ID=CGI_10006054; scaffold1317 TRF Tandem_Repeat 41092 41181 99 + . . scaffold1317 GLEAN mRNA 42667 42773 0.999949 + . ID=CGI_10006054; scaffold1317 TRF Tandem_Repeat 42667 42773 142 + . . scaffold1317 GLEAN mRNA 43464 43490 0.999949 + . ID=CGI_10006054; scaffold1317 TRF Tandem_Repeat 43464 43490 54 + . . scaffold1317 GLEAN mRNA 43929 43974 0.999949 + . ID=CGI_10006054; scaffold1317 TRF Tandem_Repeat 43929 43974 92 + . . scaffold1317 GLEAN mRNA 47354 47409 0.999949 + . ID=CGI_10006054; scaffold1317 TRF Tandem_Repeat 47354 47409 87 + . . scaffold1317 GLEAN mRNA 47671 47706 0.999949 + . ID=CGI_10006054; scaffold1317 TRF Tandem_Repeat 47671 47706 63 + . . scaffold1317 GLEAN mRNA 48100 48125 0.999949 + . ID=CGI_10006054; scaffold1317 TRF Tandem_Repeat 48100 48125 52 + . . scaffold1317 GLEAN mRNA 48601 48625 0.999949 + . ID=CGI_10006054; scaffold1317 TRF Tandem_Repeat 48601 48625 50 + . . scaffold1317 GLEAN mRNA 48776 48820 0.999949 + . ID=CGI_10006054; scaffold1317 TRF Tandem_Repeat 48776 48820 90 + . . scaffold1317 GLEAN mRNA 48938 48979 0.999949 + . ID=CGI_10006054; scaffold1317 TRF Tandem_Repeat 48938 48979 75 + . . scaffold1317 GLEAN mRNA 63271 63528 0.481188 + . ID=CGI_10006055; scaffold1317 WUBlastX DNA_Crypton 63076 63528 39 + . . scaffold1317 GLEAN mRNA 116259 116348 0.99481 + . ID=CGI_10006057; scaffold1317 TRF Tandem_Repeat 116259 116348 117 + . . scaffold1317 GLEAN mRNA 117722 117809 0.99481 + . ID=CGI_10006057; scaffold1317 TRF Tandem_Repeat 117722 117809 95 + . . scaffold1317 GLEAN mRNA 125375 125405 0.99481 + . ID=CGI_10006057; scaffold1317 TRF Tandem_Repeat 125375 125405 53 + . . scaffold1317 GLEAN mRNA 129889 130046 0.99481 + . ID=CGI_10006057; scaffold1317 TRF Tandem_Repeat 129889 130046 316 + . . scaffold1317 GLEAN mRNA 133007 133248 0.99481 + . ID=CGI_10006057; scaffold1317 TRF Tandem_Repeat 133007 133248 346 + . . scaffold1317 GLEAN mRNA 134448 134541 0.99481 + . ID=CGI_10006057; scaffold1317 TRF Tandem_Repeat 134448 134541 87 + . . scaffold42062 GLEAN mRNA 18461 18956 0.999363 - . ID=CGI_10006059; scaffold42062 TRF Tandem_Repeat 18461 18956 411 + . . scaffold42062 GLEAN mRNA 18594 18974 0.999363 - . ID=CGI_10006059; scaffold42062 TRF Tandem_Repeat 18594 18974 408 + . . scaffold42062 GLEAN mRNA 28405 28445 0.999363 - . ID=CGI_10006059; scaffold42062 TRF Tandem_Repeat 28405 28445 82 + . . scaffold42062 GLEAN mRNA 63943 64000 0.593391 + . ID=CGI_10006063; scaffold42062 TRF Tandem_Repeat 63943 64000 116 + . . scaffold42062 GLEAN mRNA 78296 78854 1 - . ID=CGI_10006065; scaffold42062 TRF Tandem_Repeat 78296 78854 527 + . . scaffold42062 GLEAN mRNA 82856 84851 1 - . ID=CGI_10006065; scaffold42062 TRF Tandem_Repeat 82856 84851 3272 + . . scaffold42062 GLEAN mRNA 84941 84975 1 - . ID=CGI_10006065; scaffold42062 TRF Tandem_Repeat 84941 84975 70 + . . scaffold42062 GLEAN mRNA 85702 86251 1 - . ID=CGI_10006065; scaffold42062 TRF Tandem_Repeat 85702 86251 829 + . . scaffold42062 GLEAN mRNA 94284 94334 0.442026 - . ID=CGI_10006066; scaffold42062 TRF Tandem_Repeat 94284 94334 102 + . . scaffold42062 GLEAN mRNA 94464 94509 0.442026 - . ID=CGI_10006066; scaffold42062 TRF Tandem_Repeat 94464 94509 92 + . . scaffold42062 GLEAN mRNA 95249 96509 0.442026 - . ID=CGI_10006066; scaffold42062 TRF Tandem_Repeat 95249 96509 1348 + . . scaffold42062 GLEAN mRNA 99779 100981 0.396182 - . ID=CGI_10006067; scaffold42062 TRF Tandem_Repeat 99779 100981 1648 + . . scaffold42062 GLEAN mRNA 103514 104629 0.396182 - . ID=CGI_10006067; scaffold42062 TRF Tandem_Repeat 103514 104629 1497 + . . scaffold42062 GLEAN mRNA 105620 105651 0.396182 - . ID=CGI_10006067; scaffold42062 TRF Tandem_Repeat 105620 105651 64 + . . scaffold1840 GLEAN mRNA 21167 21194 0.999351 + . ID=CGI_10006070; scaffold1840 TRF Tandem_Repeat 21167 21194 56 + . . scaffold1840 GLEAN mRNA 33202 33237 0.999351 + . ID=CGI_10006070; scaffold1840 TRF Tandem_Repeat 33202 33237 72 + . . scaffold1840 GLEAN mRNA 101484 101530 0.937773 - . ID=CGI_10006072; scaffold1840 TRF Tandem_Repeat 101484 101530 94 + . . scaffold42086 GLEAN mRNA 79049 79766 0.990956 + . ID=CGI_10006073; scaffold42086 TRF Tandem_Repeat 79049 79766 971 + . . scaffold42086 GLEAN mRNA 132031 132068 0.997945 - . ID=CGI_10006074; scaffold42086 WUBlastX LINE_RTE-BovB 131919 132068 79 + . . scaffold42070 GLEAN mRNA 7535 7576 0.45561 + . ID=CGI_10006075; scaffold42070 TRF Tandem_Repeat 7535 7576 84 + . . scaffold42070 GLEAN mRNA 7906 8743 0.45561 + . ID=CGI_10006075; scaffold42070 TRF Tandem_Repeat 7906 8743 1304 + . . scaffold42070 GLEAN mRNA 9224 9985 0.45561 + . ID=CGI_10006075; scaffold42070 TRF Tandem_Repeat 9224 9985 969 + . . scaffold42070 GLEAN mRNA 15182 15270 0.45561 + . ID=CGI_10006075; scaffold42070 TRF Tandem_Repeat 15182 15270 58 + . . scaffold42070 GLEAN mRNA 22095 22130 0.45561 + . ID=CGI_10006075; scaffold42070 TRF Tandem_Repeat 22095 22130 72 + . . scaffold42070 GLEAN mRNA 23770 23932 0.45561 + . ID=CGI_10006075; scaffold42070 TRF Tandem_Repeat 23770 23932 211 + . . scaffold42070 GLEAN mRNA 39211 39262 0.999897 + . ID=CGI_10006076; scaffold42070 TRF Tandem_Repeat 39211 39262 95 + . . scaffold42070 GLEAN mRNA 42016 43372 0.999897 + . ID=CGI_10006076; scaffold42070 TRF Tandem_Repeat 42016 43372 1431 + . . scaffold42070 GLEAN mRNA 42458 43301 0.999897 + . ID=CGI_10006076; scaffold42070 TRF Tandem_Repeat 42458 43301 978 + . . scaffold42070 GLEAN mRNA 50037 50074 0.999084 + . ID=CGI_10006077; scaffold42070 TRF Tandem_Repeat 50037 50074 76 + . . scaffold42070 GLEAN mRNA 67705 68070 0.466285 + . ID=CGI_10006078; scaffold42070 WUBlastX LINE_L1 67705 68070 70 - . . scaffold42070 GLEAN mRNA 67594 68067 0.466285 + . ID=CGI_10006078; scaffold42070 WUBlastX LINE_L1 67594 68067 28 - . . scaffold42070 GLEAN mRNA 67837 68091 0.466285 + . ID=CGI_10006078; scaffold42070 WUBlastX LINE_L1-Tx1 67837 68091 190 - . . scaffold42070 GLEAN mRNA 67834 68277 0.466285 + . ID=CGI_10006078; scaffold42070 WUBlastX LINE_L1 67834 68277 37 - . . scaffold42070 GLEAN mRNA 83677 83717 1 + . ID=CGI_10006079; scaffold42070 TRF Tandem_Repeat 83677 83717 73 + . . scaffold42076 GLEAN mRNA 29210 29497 0.941371 + . ID=CGI_10006082; scaffold42076 WUBlastX DNA_TcMar-Tc1 29210 29497 31 + . . scaffold42076 GLEAN mRNA 29547 30230 0.941371 + . ID=CGI_10006082; scaffold42076 WUBlastX DNA_TcMar-Tc1 29547 30230 326 + . . scaffold42076 GLEAN mRNA 101230 101405 0.589285 - . ID=CGI_10006084; scaffold42076 TRF Tandem_Repeat 101230 101405 133 + . . scaffold42076 GLEAN mRNA 101353 101447 0.589285 - . ID=CGI_10006084; scaffold42076 TRF Tandem_Repeat 101353 101447 93 + . . scaffold42076 GLEAN mRNA 144347 144736 1 - . ID=CGI_10006087; scaffold42076 WUBlastX DNA_Harbinger 144347 144736 106 + . . scaffold42076 GLEAN mRNA 144395 144664 1 - . ID=CGI_10006087; scaffold42076 WUBlastX DNA_Harbinger 144395 144664 109 + . . scaffold775 GLEAN mRNA 71405 71449 1 + . ID=CGI_10006088; scaffold775 TRF Tandem_Repeat 71405 71449 72 + . . scaffold775 GLEAN mRNA 71409 71458 1 + . ID=CGI_10006088; scaffold775 TRF Tandem_Repeat 71409 71458 52 + . . scaffold775 GLEAN mRNA 81535 82087 1 - . ID=CGI_10006089; scaffold775 TRF Tandem_Repeat 81535 82087 687 + . . scaffold775 GLEAN mRNA 81535 82087 1 - . ID=CGI_10006089; scaffold775 TRF Tandem_Repeat 81535 82087 765 + . . scaffold775 GLEAN mRNA 81535 82087 1 - . ID=CGI_10006089; scaffold775 TRF Tandem_Repeat 81535 82087 826 + . . scaffold775 GLEAN mRNA 115529 116176 0.999137 - . ID=CGI_10006091; scaffold775 WUBlastX DNA_Kolobok-Hyd 115529 116221 49 - . . scaffold775 GLEAN mRNA 115961 116176 0.999137 - . ID=CGI_10006091; scaffold775 WUBlastX DNA_Kolobok-Hyd 115961 116317 44 - . . scaffold775 GLEAN mRNA 115529 115843 0.999137 - . ID=CGI_10006091; scaffold775 WUBlastX DNA_Kolobok-Hyd 115529 115843 64 - . . scaffold775 GLEAN mRNA 128605 129036 0.997009 + . ID=CGI_10006094; scaffold775 WUBlastX DNA_Merlin 128605 129036 140 + . . scaffold775 GLEAN mRNA 127917 128264 0.997009 + . ID=CGI_10006094; scaffold775 WUBlastX DNA_Merlin 127917 128264 47 + . . scaffold775 GLEAN mRNA 131840 131854 0.775544 + . ID=CGI_10006095; scaffold775 WUBlastX LINE_L1-Tx1 131495 131854 56 + . . scaffold775 GLEAN mRNA 131840 131860 0.775544 + . ID=CGI_10006095; scaffold775 WUBlastX LINE_L1 131576 131860 70 + . . scaffold42090 GLEAN mRNA 34672 34713 0.999607 + . ID=CGI_10006104; scaffold42090 TRF Tandem_Repeat 34672 34713 68 + . . scaffold42090 GLEAN mRNA 34675 34712 0.999607 + . ID=CGI_10006104; scaffold42090 TRF Tandem_Repeat 34675 34712 51 + . . scaffold42090 GLEAN mRNA 32539 33284 0.999607 + . ID=CGI_10006104; scaffold42090 TRF Tandem_Repeat 32539 33284 946 + . . scaffold42090 GLEAN mRNA 51305 51485 0.999612 - . ID=CGI_10006106; scaffold42090 TRF Tandem_Repeat 51305 51485 198 + . . scaffold42090 GLEAN mRNA 79602 79638 0.999674 - . ID=CGI_10006107; scaffold42090 TRF Tandem_Repeat 79602 79638 67 + . . scaffold42090 GLEAN mRNA 86462 86511 0.999674 - . ID=CGI_10006107; scaffold42090 TRF Tandem_Repeat 86462 86511 100 + . . scaffold42112 GLEAN mRNA 28154 28940 0.999823 - . ID=CGI_10006114; scaffold42112 TRF Tandem_Repeat 28154 28940 925 + . . scaffold42112 GLEAN mRNA 51304 51669 0.999673 - . ID=CGI_10006116; scaffold42112 WUBlastX DNA_hAT-hATw 51304 51669 21 - . . scaffold42112 GLEAN mRNA 81346 81376 0.819024 + . ID=CGI_10006120; scaffold42112 TRF Tandem_Repeat 81346 81376 53 + . . scaffold42112 GLEAN mRNA 81581 82672 0.819024 + . ID=CGI_10006120; scaffold42112 TRF Tandem_Repeat 81581 82672 1657 + . . scaffold42112 GLEAN mRNA 116470 116594 0.999598 - . ID=CGI_10006123; scaffold42112 TRF Tandem_Repeat 116470 116594 101 + . . scaffold42112 GLEAN mRNA 117613 118482 0.999598 - . ID=CGI_10006123; scaffold42112 TRF Tandem_Repeat 117613 118482 1243 + . . scaffold42112 GLEAN mRNA 135602 135666 1 - . ID=CGI_10006125; scaffold42112 TRF Tandem_Repeat 135602 135666 130 + . . scaffold1881 GLEAN mRNA 15309 15346 1 + . ID=CGI_10006127; scaffold1881 TRF Tandem_Repeat 15309 15346 76 + . . scaffold1881 GLEAN mRNA 22180 23010 0.999998 + . ID=CGI_10006128; scaffold1881 TRF Tandem_Repeat 22180 23010 934 + . . scaffold1881 GLEAN mRNA 41009 41087 0.934445 - . ID=CGI_10006129; scaffold1881 TRF Tandem_Repeat 41009 41087 113 + . . scaffold1881 GLEAN mRNA 125119 125187 0.865841 + . ID=CGI_10006138; scaffold1881 TRF Tandem_Repeat 125119 125187 138 + . . scaffold1656 GLEAN mRNA 60834 60875 0.308617 - . ID=CGI_10006142; scaffold1656 TRF Tandem_Repeat 60834 60875 59 + . . scaffold1656 GLEAN mRNA 62642 62836 0.308617 - . ID=CGI_10006142; scaffold1656 WUBlastX LTR_DIRS 62642 62836 47 + . . scaffold1656 GLEAN mRNA 62997 63104 0.308617 - . ID=CGI_10006142; scaffold1656 WUBlastX LTR_DIRS 62997 63104 41 + . . scaffold1656 GLEAN mRNA 73541 73825 0.308617 - . ID=CGI_10006142; scaffold1656 WUBlastX LINE_RTE-BovB 73541 73825 75 + . . scaffold1656 GLEAN mRNA 76323 76371 0.912224 + . ID=CGI_10006143; scaffold1656 TRF Tandem_Repeat 76323 76371 98 + . . scaffold1656 GLEAN mRNA 74783 76264 0.912224 + . ID=CGI_10006143; scaffold1656 WUBlastX LTR_Gypsy-Troyk 74783 76264 75 + . . scaffold1656 GLEAN mRNA 74818 75384 0.912224 + . ID=CGI_10006143; scaffold1656 WUBlastX LTR_Gypsy-Troyk 74818 75384 117 + . . scaffold1656 GLEAN mRNA 75390 75638 0.912224 + . ID=CGI_10006143; scaffold1656 WUBlastX LTR_Gypsy-Troyk 75390 75638 87 + . . scaffold1656 GLEAN mRNA 124340 124383 0.949613 - . ID=CGI_10006145; scaffold1656 TRF Tandem_Repeat 124340 124383 88 + . . scaffold1656 GLEAN mRNA 125026 125054 0.949613 - . ID=CGI_10006145; scaffold1656 TRF Tandem_Repeat 125026 125054 58 + . . scaffold1656 GLEAN mRNA 122252 122476 0.949613 - . ID=CGI_10006145; scaffold1656 WUBlastX LTR_Ngaro 122252 122476 58 - . . scaffold1656 GLEAN mRNA 122733 122861 0.949613 - . ID=CGI_10006145; scaffold1656 WUBlastX LTR_Ngaro 122733 122861 78 - . . scaffold1656 GLEAN mRNA 122733 122897 0.949613 - . ID=CGI_10006145; scaffold1656 WUBlastX LTR_Ngaro 122733 122897 72 - . . scaffold1656 GLEAN mRNA 122947 123090 0.949613 - . ID=CGI_10006145; scaffold1656 WUBlastX LTR_Ngaro 122947 123090 28 - . . scaffold1656 GLEAN mRNA 122631 122903 0.949613 - . ID=CGI_10006145; scaffold1656 WUBlastX LTR_Ngaro 122631 122903 50 - . . scaffold426 GLEAN mRNA 87559 87592 0.325429 - . ID=CGI_10006150; scaffold426 TRF Tandem_Repeat 87559 87592 59 + . . scaffold426 GLEAN mRNA 99607 99653 0.6259 + . ID=CGI_10006151; scaffold426 TRF Tandem_Repeat 99607 99653 94 + . . scaffold1806 GLEAN mRNA 9623 9661 0.738373 - . ID=CGI_10006153; scaffold1806 TRF Tandem_Repeat 9623 9661 64 + . . scaffold1806 GLEAN mRNA 13701 13734 0.921324 + . ID=CGI_10006154; scaffold1806 TRF Tandem_Repeat 13701 13734 68 + . . scaffold1806 GLEAN mRNA 17059 17455 0.921324 + . ID=CGI_10006154; scaffold1806 TRF Tandem_Repeat 17059 17455 378 + . . scaffold1806 GLEAN mRNA 17059 17455 0.921324 + . ID=CGI_10006154; scaffold1806 TRF Tandem_Repeat 17059 17455 340 + . . scaffold1806 GLEAN mRNA 23698 23736 0.675076 + . ID=CGI_10006155; scaffold1806 TRF Tandem_Repeat 23698 23736 53 + . . scaffold1806 GLEAN mRNA 26623 26673 0.675076 + . ID=CGI_10006155; scaffold1806 TRF Tandem_Repeat 26623 26673 102 + . . scaffold1806 GLEAN mRNA 34721 35031 0.675076 + . ID=CGI_10006155; scaffold1806 TRF Tandem_Repeat 34721 35031 378 + . . scaffold1806 GLEAN mRNA 57726 57817 0.994674 + . ID=CGI_10006156; scaffold1806 TRF Tandem_Repeat 57726 57817 175 + . . scaffold1806 GLEAN mRNA 53072 54319 0.994674 + . ID=CGI_10006156; scaffold1806 WUBlastX LTR_Gypsy 53072 54319 207 - . . scaffold1806 GLEAN mRNA 55439 57166 0.994674 + . ID=CGI_10006156; scaffold1806 WUBlastX LTR_Gypsy 55439 57166 954 - . . scaffold1806 GLEAN mRNA 53261 56743 0.994674 + . ID=CGI_10006156; scaffold1806 WUBlastX LTR_Gypsy 53261 56743 2768 - . . scaffold1806 GLEAN mRNA 66350 66391 0.994674 + . ID=CGI_10006156; scaffold1806 TRF Tandem_Repeat 66350 66391 50 + . . scaffold1806 GLEAN mRNA 84394 84693 0.54485 - . ID=CGI_10006158; scaffold1806 WUBlastX LTR_Gypsy 84394 84693 160 - . . scaffold1806 GLEAN mRNA 84650 85675 0.54485 - . ID=CGI_10006158; scaffold1806 WUBlastX LTR_Gypsy 84650 85675 575 - . . scaffold1806 GLEAN mRNA 86367 87068 0.54485 - . ID=CGI_10006158; scaffold1806 WUBlastX LTR_Gypsy 86367 87068 287 - . . scaffold1806 GLEAN mRNA 86256 87182 0.54485 - . ID=CGI_10006158; scaffold1806 WUBlastX LTR_Gypsy 86256 87182 201 - . . scaffold1806 GLEAN mRNA 84677 86050 0.54485 - . ID=CGI_10006158; scaffold1806 WUBlastX LTR_Gypsy 84677 86050 509 - . . scaffold1806 GLEAN mRNA 84665 86323 0.54485 - . ID=CGI_10006158; scaffold1806 WUBlastX LTR_Gypsy 84665 86323 474 - . . scaffold1806 GLEAN mRNA 84280 84666 0.54485 - . ID=CGI_10006158; scaffold1806 WUBlastX LTR_Gypsy 84280 84666 117 - . . scaffold1806 GLEAN mRNA 88937 89122 0.54485 - . ID=CGI_10006158; scaffold1806 WUBlastX LINE_Penelope 88937 89194 21 + . . scaffold42096 GLEAN mRNA 68229 69252 0.987952 + . ID=CGI_10006164; scaffold42096 TRF Tandem_Repeat 68229 69252 1514 + . . scaffold42096 GLEAN mRNA 89150 89260 0.987952 + . ID=CGI_10006164; scaffold42096 TRF Tandem_Repeat 89150 89260 73 + . . scaffold42096 GLEAN mRNA 89150 89246 0.987952 + . ID=CGI_10006164; scaffold42096 TRF Tandem_Repeat 89150 89246 81 + . . scaffold42096 GLEAN mRNA 89150 89309 0.987952 + . ID=CGI_10006164; scaffold42096 TRF Tandem_Repeat 89150 89309 108 + . . scaffold42096 GLEAN mRNA 111099 111139 0.947295 - . ID=CGI_10006165; scaffold42096 TRF Tandem_Repeat 111099 111139 73 + . . scaffold42096 GLEAN mRNA 105776 105844 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_CR1 105776 105844 23 + . . scaffold42096 GLEAN mRNA 107437 107574 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX DNA_Harbinger 107437 107574 24 + . . scaffold42096 GLEAN mRNA 106707 107078 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX DNA_Harbinger 106707 107078 196 + . . scaffold42096 GLEAN mRNA 105186 105578 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_RTE-X 105186 105578 199 + . . scaffold42096 GLEAN mRNA 108923 109411 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 108923 109411 154 + . . scaffold42096 GLEAN mRNA 105183 105710 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_RTE-X 105183 105710 112 + . . scaffold42096 GLEAN mRNA 109040 109399 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 109040 109399 308 + . . scaffold42096 GLEAN mRNA 109431 109763 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 109431 109763 245 + . . scaffold42096 GLEAN mRNA 109765 110340 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 109765 110340 336 + . . scaffold42096 GLEAN mRNA 110328 110705 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_L2 110328 110705 94 + . . scaffold42096 GLEAN mRNA 107935 108855 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX DNA_Harbinger 107935 108855 586 - . . scaffold42096 GLEAN mRNA 105249 105821 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_RTE-X 105249 105821 37 + . . scaffold42096 GLEAN mRNA 111099 111139 0.999659 + . ID=CGI_10006166; scaffold42096 TRF Tandem_Repeat 111099 111139 73 + . . scaffold42096 GLEAN mRNA 107437 107574 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX DNA_Harbinger 107437 107574 24 + . . scaffold42096 GLEAN mRNA 106707 107078 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX DNA_Harbinger 106707 107078 196 + . . scaffold42096 GLEAN mRNA 108923 109411 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_L2 108923 109411 154 + . . scaffold42096 GLEAN mRNA 109040 109399 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_L2 109040 109399 308 + . . scaffold42096 GLEAN mRNA 109431 109763 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_L2 109431 109763 245 + . . scaffold42096 GLEAN mRNA 109765 110340 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_L2 109765 110340 336 + . . scaffold42096 GLEAN mRNA 110328 110705 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_L2 110328 110705 94 + . . scaffold42096 GLEAN mRNA 107935 108855 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX DNA_Harbinger 107935 108855 586 - . . scaffold42096 GLEAN mRNA 136046 136081 0.998561 - . ID=CGI_10006168; scaffold42096 TRF Tandem_Repeat 136046 136081 63 + . . scaffold932 GLEAN mRNA 82050 82798 0.972553 - . ID=CGI_10006173; scaffold932 TRF Tandem_Repeat 82050 82798 526 + . . scaffold932 GLEAN mRNA 82144 82798 0.972553 - . ID=CGI_10006173; scaffold932 TRF Tandem_Repeat 82144 82798 576 + . . scaffold932 GLEAN mRNA 82097 82798 0.972553 - . ID=CGI_10006173; scaffold932 TRF Tandem_Repeat 82097 82798 644 + . . scaffold932 GLEAN mRNA 84270 84446 0.972553 - . ID=CGI_10006173; scaffold932 TRF Tandem_Repeat 84270 84446 300 + . . scaffold932 GLEAN mRNA 100070 100325 0.394107 + . ID=CGI_10006174; scaffold932 TRF Tandem_Repeat 100070 100325 485 + . . scaffold932 GLEAN mRNA 100456 100666 0.394107 + . ID=CGI_10006174; scaffold932 TRF Tandem_Repeat 100456 100666 323 + . . scaffold932 GLEAN mRNA 109318 109693 0.394107 + . ID=CGI_10006174; scaffold932 TRF Tandem_Repeat 109318 109693 468 + . . scaffold932 GLEAN mRNA 109732 109863 0.394107 + . ID=CGI_10006174; scaffold932 TRF Tandem_Repeat 109732 109863 194 + . . scaffold932 GLEAN mRNA 111959 112676 0.394107 + . ID=CGI_10006174; scaffold932 TRF Tandem_Repeat 111959 112676 1116 + . . scaffold932 GLEAN mRNA 118130 118519 0.394107 + . ID=CGI_10006174; scaffold932 TRF Tandem_Repeat 118130 118519 619 + . . scaffold932 GLEAN mRNA 120040 121557 0.394107 + . ID=CGI_10006174; scaffold932 TRF Tandem_Repeat 120040 121557 1339 + . . scaffold932 GLEAN mRNA 120875 121099 0.394107 + . ID=CGI_10006174; scaffold932 TRF Tandem_Repeat 120875 121099 59 + . . scaffold932 GLEAN mRNA 121035 121459 0.394107 + . ID=CGI_10006174; scaffold932 TRF Tandem_Repeat 121035 121459 71 + . . scaffold932 GLEAN mRNA 97995 98815 0.394107 + . ID=CGI_10006174; scaffold932 TRF Tandem_Repeat 97995 98815 1115 + . . scaffold1526 GLEAN mRNA 33098 33133 0.993907 + . ID=CGI_10006180; scaffold1526 TRF Tandem_Repeat 33098 33133 54 + . . scaffold1526 GLEAN mRNA 33098 33133 0.996884 - . ID=CGI_10006181; scaffold1526 TRF Tandem_Repeat 33098 33133 54 + . . scaffold1526 GLEAN mRNA 51630 51666 0.999989 - . ID=CGI_10006183; scaffold1526 TRF Tandem_Repeat 51630 51666 56 + . . scaffold1526 GLEAN mRNA 51666 51693 0.999989 - . ID=CGI_10006183; scaffold1526 TRF Tandem_Repeat 51666 51693 56 + . . scaffold1526 GLEAN mRNA 52395 52554 0.999989 - . ID=CGI_10006183; scaffold1526 TRF Tandem_Repeat 52395 52554 248 + . . scaffold1526 GLEAN mRNA 58942 59087 0.514346 - . ID=CGI_10006185; scaffold1526 TRF Tandem_Repeat 58942 59087 274 + . . scaffold1526 GLEAN mRNA 60172 60218 0.514346 - . ID=CGI_10006185; scaffold1526 TRF Tandem_Repeat 60172 60218 94 + . . scaffold1526 GLEAN mRNA 71869 71923 0.514346 - . ID=CGI_10006185; scaffold1526 TRF Tandem_Repeat 71869 71923 110 + . . scaffold1526 GLEAN mRNA 75293 75325 0.991676 + . ID=CGI_10006186; scaffold1526 TRF Tandem_Repeat 75293 75325 66 + . . scaffold1526 GLEAN mRNA 87180 87317 0.632332 - . ID=CGI_10006187; scaffold1526 TRF Tandem_Repeat 87180 87317 175 + . . scaffold1526 GLEAN mRNA 88175 89098 0.632332 - . ID=CGI_10006187; scaffold1526 WUBlastX DNA_TcMar-Tc2 88175 89098 436 - . . scaffold1526 GLEAN mRNA 89085 89255 0.632332 - . ID=CGI_10006187; scaffold1526 WUBlastX DNA_TcMar-Tc2 89085 89255 52 - . . scaffold66 GLEAN mRNA 14137 14170 0.979626 - . ID=CGI_10006190; scaffold66 TRF Tandem_Repeat 14137 14170 50 + . . scaffold66 GLEAN mRNA 14861 14944 0.979626 - . ID=CGI_10006190; scaffold66 TRF Tandem_Repeat 14861 14944 107 + . . scaffold66 GLEAN mRNA 16330 16361 0.979626 - . ID=CGI_10006190; scaffold66 TRF Tandem_Repeat 16330 16361 64 + . . scaffold66 GLEAN mRNA 17613 17647 0.979626 - . ID=CGI_10006190; scaffold66 TRF Tandem_Repeat 17613 17647 70 + . . scaffold66 GLEAN mRNA 114281 114337 0.445669 + . ID=CGI_10006192; scaffold66 TRF Tandem_Repeat 114281 114337 51 + . . scaffold66 GLEAN mRNA 112338 112442 0.445669 + . ID=CGI_10006192; scaffold66 WUBlastX DNA_IS4EU 112338 112442 48 + . . scaffold66 GLEAN mRNA 112472 112600 0.445669 + . ID=CGI_10006192; scaffold66 WUBlastX DNA_IS4EU 112472 112600 27 + . . scaffold66 GLEAN mRNA 114281 114337 0.991828 - . ID=CGI_10006193; scaffold66 TRF Tandem_Repeat 114281 114337 51 + . . scaffold66 GLEAN mRNA 118819 118864 0.991828 - . ID=CGI_10006193; scaffold66 TRF Tandem_Repeat 118819 118864 92 + . . scaffold42128 GLEAN mRNA 12002 12727 0.99078 + . ID=CGI_10006194; scaffold42128 WUBlastX DNA_TcMar-Tc1 12002 12727 193 + . . scaffold42128 GLEAN mRNA 12784 12948 0.99078 + . ID=CGI_10006194; scaffold42128 WUBlastX DNA_TcMar-Tc1 12784 12948 53 + . . scaffold42128 GLEAN mRNA 11706 12173 0.99078 + . ID=CGI_10006194; scaffold42128 WUBlastX DNA_TcMar-Tc1 11706 12173 123 + . . scaffold42128 GLEAN mRNA 12170 12727 0.99078 + . ID=CGI_10006194; scaffold42128 WUBlastX DNA_TcMar-Tc1 12170 12727 278 + . . scaffold42128 GLEAN mRNA 12811 12948 0.99078 + . ID=CGI_10006194; scaffold42128 WUBlastX DNA_TcMar-Tc1 12811 12948 78 + . . scaffold42128 GLEAN mRNA 53564 54388 0.838265 + . ID=CGI_10006196; scaffold42128 TRF Tandem_Repeat 53564 54388 1154 + . . scaffold42128 GLEAN mRNA 116568 116616 0.954298 - . ID=CGI_10006199; scaffold42128 TRF Tandem_Repeat 116568 116616 98 + . . scaffold42128 GLEAN mRNA 114954 115412 0.954298 - . ID=CGI_10006199; scaffold42128 WUBlastX LINE_L2 114954 115412 133 - . . scaffold42128 GLEAN mRNA 137897 137935 0.702204 - . ID=CGI_10006201; scaffold42128 TRF Tandem_Repeat 137897 137935 55 + . . scaffold42128 GLEAN mRNA 136918 137238 0.702204 - . ID=CGI_10006201; scaffold42128 WUBlastX LINE_CR1 136918 137238 62 - . . scaffold200 GLEAN mRNA 14773 14812 0.697892 - . ID=CGI_10006218; scaffold200 TRF Tandem_Repeat 14773 14812 80 + . . scaffold200 GLEAN mRNA 14970 15257 0.697892 - . ID=CGI_10006218; scaffold200 WUBlastX LINE_RTE-BovB 14970 15257 45 + . . scaffold200 GLEAN mRNA 15084 15263 0.697892 - . ID=CGI_10006218; scaffold200 WUBlastX LINE_RTE-BovB 15084 15263 77 + . . scaffold200 GLEAN mRNA 33546 33800 0.644312 + . ID=CGI_10006223; scaffold200 TRF Tandem_Repeat 33546 33800 321 + . . scaffold200 GLEAN mRNA 34551 35714 0.644312 + . ID=CGI_10006223; scaffold200 TRF Tandem_Repeat 34551 35714 1251 + . . scaffold200 GLEAN mRNA 35767 35819 0.644312 + . ID=CGI_10006223; scaffold200 TRF Tandem_Repeat 35767 35819 106 + . . scaffold200 GLEAN mRNA 36684 36712 0.644312 + . ID=CGI_10006223; scaffold200 TRF Tandem_Repeat 36684 36712 58 + . . scaffold200 GLEAN mRNA 37031 37071 0.644312 + . ID=CGI_10006223; scaffold200 TRF Tandem_Repeat 37031 37071 82 + . . scaffold200 GLEAN mRNA 37191 37260 0.644312 + . ID=CGI_10006223; scaffold200 TRF Tandem_Repeat 37191 37260 131 + . . scaffold200 GLEAN mRNA 48797 48842 0.999107 + . ID=CGI_10006224; scaffold200 TRF Tandem_Repeat 48797 48842 74 + . . scaffold200 GLEAN mRNA 46242 46961 0.999107 + . ID=CGI_10006224; scaffold200 WUBlastX LTR_Gypsy 46242 46961 64 + . . scaffold200 GLEAN mRNA 136330 136396 0.991362 - . ID=CGI_10006229; scaffold200 TRF Tandem_Repeat 136330 136396 89 + . . scaffold42124 GLEAN mRNA 34144 34194 0.69411 + . ID=CGI_10006230; scaffold42124 TRF Tandem_Repeat 34144 34194 50 + . . scaffold42124 GLEAN mRNA 34286 34419 0.69411 + . ID=CGI_10006230; scaffold42124 TRF Tandem_Repeat 34286 34419 72 + . . scaffold42124 GLEAN mRNA 38482 38537 0.69411 + . ID=CGI_10006230; scaffold42124 TRF Tandem_Repeat 38482 38537 112 + . . scaffold42124 GLEAN mRNA 42762 42965 0.69411 + . ID=CGI_10006230; scaffold42124 WUBlastX DNA_MuDR 42762 42965 74 - . . scaffold42124 GLEAN mRNA 42702 42965 0.69411 + . ID=CGI_10006230; scaffold42124 WUBlastX DNA_MuDR 42702 42965 48 - . . scaffold42124 GLEAN mRNA 65190 65876 0.99926 + . ID=CGI_10006232; scaffold42124 WUBlastX LTR_Gypsy 65190 65876 61 + . . scaffold42124 GLEAN mRNA 110278 110318 0.998311 - . ID=CGI_10006238; scaffold42124 TRF Tandem_Repeat 110278 110318 82 + . . scaffold42124 GLEAN mRNA 111544 111568 0.998311 - . ID=CGI_10006238; scaffold42124 TRF Tandem_Repeat 111544 111568 50 + . . scaffold42124 GLEAN mRNA 139768 139834 1 + . ID=CGI_10006240; scaffold42124 TRF Tandem_Repeat 139768 139834 134 + . . scaffold1826 GLEAN mRNA 40951 41145 0.756838 + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy-Cigr 40951 41145 91 + . . scaffold1826 GLEAN mRNA 41151 41345 0.756838 + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 41151 41345 102 + . . scaffold1826 GLEAN mRNA 40152 40280 0.756838 + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 40152 40280 29 + . . scaffold1826 GLEAN mRNA 39953 40141 0.756838 + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 39953 40141 44 + . . scaffold1826 GLEAN mRNA 40984 41181 0.756838 + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 40984 41181 107 + . . scaffold1826 GLEAN mRNA 47881 48165 0.756838 + . ID=CGI_10006241; scaffold1826 WUBlastX DNA_Harbinger 47881 48165 164 - . . scaffold1826 GLEAN mRNA 40861 41163 0.756838 + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 40861 41163 72 + . . scaffold1826 GLEAN mRNA 40984 41142 0.756838 + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 40984 41142 113 + . . scaffold1826 GLEAN mRNA 41160 41411 0.756838 + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 41160 41411 60 + . . scaffold1826 GLEAN mRNA 40912 41145 0.756838 + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 40912 41145 82 + . . scaffold1826 GLEAN mRNA 98153 98206 0.987779 + . ID=CGI_10006242; scaffold1826 TRF Tandem_Repeat 98153 98206 74 + . . scaffold1826 GLEAN mRNA 99613 100530 0.987779 + . ID=CGI_10006242; scaffold1826 TRF Tandem_Repeat 99613 100530 1339 + . . scaffold1826 GLEAN mRNA 130465 130508 0.999926 + . ID=CGI_10006243; scaffold1826 TRF Tandem_Repeat 130465 130508 52 + . . scaffold1826 GLEAN mRNA 145184 145208 1 + . ID=CGI_10006244; scaffold1826 TRF Tandem_Repeat 145184 145208 50 + . . scaffold42144 GLEAN mRNA 30057 30095 0.946894 + . ID=CGI_10006246; scaffold42144 TRF Tandem_Repeat 30057 30095 78 + . . scaffold42144 GLEAN mRNA 40479 40518 0.946894 + . ID=CGI_10006246; scaffold42144 TRF Tandem_Repeat 40479 40518 80 + . . scaffold42144 GLEAN mRNA 50486 50525 0.946894 + . ID=CGI_10006246; scaffold42144 TRF Tandem_Repeat 50486 50525 80 + . . scaffold42144 GLEAN mRNA 71034 71135 0.999343 - . ID=CGI_10006247; scaffold42144 TRF Tandem_Repeat 71034 71135 89 + . . scaffold42144 GLEAN mRNA 75187 75238 0.999343 - . ID=CGI_10006247; scaffold42144 TRF Tandem_Repeat 75187 75238 97 + . . scaffold42144 GLEAN mRNA 108436 109431 0.993907 - . ID=CGI_10006248; scaffold42144 WUBlastX DNA_TcMar-Tc1 108436 109431 244 + . . scaffold42144 GLEAN mRNA 108183 108281 0.993907 - . ID=CGI_10006248; scaffold42144 WUBlastX DNA_TcMar-Marin 108183 108281 20 + . . scaffold42144 GLEAN mRNA 116427 116602 0.993907 - . ID=CGI_10006248; scaffold42144 TRF Tandem_Repeat 116427 116602 352 + . . scaffold42144 GLEAN mRNA 122450 122485 0.993907 - . ID=CGI_10006248; scaffold42144 TRF Tandem_Repeat 122450 122485 63 + . . scaffold42144 GLEAN mRNA 122694 122838 0.993907 - . ID=CGI_10006248; scaffold42144 TRF Tandem_Repeat 122694 122838 112 + . . scaffold42144 GLEAN mRNA 124336 124779 0.993907 - . ID=CGI_10006248; scaffold42144 WUBlastX LINE_RTE-X 124336 124779 118 + . . scaffold42144 GLEAN mRNA 124408 124779 0.993907 - . ID=CGI_10006248; scaffold42144 WUBlastX LINE_RTE-X 124408 124779 156 + . . scaffold42144 GLEAN mRNA 128028 128801 0.937847 + . ID=CGI_10006249; scaffold42144 WUBlastX LTR_Gypsy 128028 128801 131 - . . scaffold42144 GLEAN mRNA 135811 135879 0.937847 + . ID=CGI_10006249; scaffold42144 TRF Tandem_Repeat 135811 135879 138 + . . scaffold42144 GLEAN mRNA 140529 140585 0.937847 + . ID=CGI_10006249; scaffold42144 TRF Tandem_Repeat 140529 140585 114 + . . scaffold770 GLEAN mRNA 64964 65104 0.520804 - . ID=CGI_10006265; scaffold770 WUBlastX DNA_Kolobok 64964 65104 33 + . . scaffold770 GLEAN mRNA 65292 65447 0.520804 - . ID=CGI_10006265; scaffold770 WUBlastX DNA_Kolobok 65292 65447 44 + . . scaffold770 GLEAN mRNA 65570 65725 0.520804 - . ID=CGI_10006265; scaffold770 WUBlastX DNA_Kolobok 65570 65725 38 + . . scaffold1766 GLEAN mRNA 9533 9582 0.999906 - . ID=CGI_10006270; scaffold1766 TRF Tandem_Repeat 9533 9582 82 + . . scaffold1766 GLEAN mRNA 11633 11797 0.999906 - . ID=CGI_10006270; scaffold1766 WUBlastX LTR_DIRS 11633 11797 78 + . . scaffold1766 GLEAN mRNA 11788 11886 0.999906 - . ID=CGI_10006270; scaffold1766 WUBlastX LTR_DIRS 11788 11886 30 + . . scaffold1766 GLEAN mRNA 73818 73937 0.999735 - . ID=CGI_10006273; scaffold1766 TRF Tandem_Repeat 73818 73937 222 + . . scaffold1766 GLEAN mRNA 73991 74482 0.999735 - . ID=CGI_10006273; scaffold1766 TRF Tandem_Repeat 73991 74482 824 + . . scaffold1766 GLEAN mRNA 77780 77828 0.999735 - . ID=CGI_10006273; scaffold1766 TRF Tandem_Repeat 77780 77828 91 + . . scaffold1766 GLEAN mRNA 89094 89153 0.810571 + . ID=CGI_10006274; scaffold1766 TRF Tandem_Repeat 89094 89153 111 + . . scaffold1766 GLEAN mRNA 111761 111821 0.669853 + . ID=CGI_10006276; scaffold1766 TRF Tandem_Repeat 111761 111821 122 + . . scaffold1766 GLEAN mRNA 115809 115905 0.669853 + . ID=CGI_10006276; scaffold1766 TRF Tandem_Repeat 115809 115905 107 + . . scaffold1766 GLEAN mRNA 126024 126111 0.996199 - . ID=CGI_10006278; scaffold1766 TRF Tandem_Repeat 126024 126111 54 + . . scaffold1766 GLEAN mRNA 126871 127626 0.996199 - . ID=CGI_10006278; scaffold1766 TRF Tandem_Repeat 126871 127626 856 + . . scaffold1766 GLEAN mRNA 126962 127701 0.996199 - . ID=CGI_10006278; scaffold1766 TRF Tandem_Repeat 126962 127701 659 + . . scaffold1766 GLEAN mRNA 129062 130176 0.996199 - . ID=CGI_10006278; scaffold1766 TRF Tandem_Repeat 129062 130176 552 + . . scaffold1766 GLEAN mRNA 130282 130338 0.996199 - . ID=CGI_10006278; scaffold1766 TRF Tandem_Repeat 130282 130338 96 + . . scaffold1766 GLEAN mRNA 134296 134337 0.996199 - . ID=CGI_10006278; scaffold1766 TRF Tandem_Repeat 134296 134337 84 + . . scaffold1766 GLEAN mRNA 138415 139010 0.996199 - . ID=CGI_10006278; scaffold1766 TRF Tandem_Repeat 138415 139010 1111 + . . scaffold1766 GLEAN mRNA 139956 140061 0.996199 - . ID=CGI_10006278; scaffold1766 TRF Tandem_Repeat 139956 140061 176 + . . scaffold1766 GLEAN mRNA 140518 140569 0.996199 - . ID=CGI_10006278; scaffold1766 TRF Tandem_Repeat 140518 140569 104 + . . scaffold1766 GLEAN mRNA 142394 142787 0.996199 - . ID=CGI_10006278; scaffold1766 TRF Tandem_Repeat 142394 142787 563 + . . scaffold1766 GLEAN mRNA 143280 143364 0.996199 - . ID=CGI_10006278; scaffold1766 TRF Tandem_Repeat 143280 143364 86 + . . scaffold1766 GLEAN mRNA 146082 146255 0.996199 - . ID=CGI_10006278; scaffold1766 WUBlastX DNA_hAT-hAT5 146082 146255 26 - . . scaffold42166 GLEAN mRNA 111362 111412 0.62602 - . ID=CGI_10006280; scaffold42166 TRF Tandem_Repeat 111362 111412 102 + . . scaffold1166 GLEAN mRNA 9942 9988 0.883594 + . ID=CGI_10006284; scaffold1166 TRF Tandem_Repeat 9942 9988 85 + . . scaffold1166 GLEAN mRNA 13547 14914 0.883594 + . ID=CGI_10006284; scaffold1166 WUBlastX LINE_RTE-X 13547 14914 401 - . . scaffold1166 GLEAN mRNA 13288 13353 0.883594 + . ID=CGI_10006284; scaffold1166 WUBlastX LINE_CR1 13288 13353 23 - . . scaffold1166 GLEAN mRNA 23465 23516 0.999993 + . ID=CGI_10006285; scaffold1166 TRF Tandem_Repeat 23465 23516 88 + . . scaffold968 GLEAN mRNA 571 598 0.999998 - . ID=CGI_10006288; scaffold968 TRF Tandem_Repeat 571 598 56 + . . scaffold968 GLEAN mRNA 62993 63048 0.525344 - . ID=CGI_10006294; scaffold968 TRF Tandem_Repeat 62993 63048 112 + . . scaffold968 GLEAN mRNA 63054 63079 0.525344 - . ID=CGI_10006294; scaffold968 TRF Tandem_Repeat 63054 63079 52 + . . scaffold968 GLEAN mRNA 68445 68469 0.525344 - . ID=CGI_10006294; scaffold968 TRF Tandem_Repeat 68445 68469 50 + . . scaffold968 GLEAN mRNA 73749 73775 0.662952 - . ID=CGI_10006295; scaffold968 TRF Tandem_Repeat 73749 73775 54 + . . scaffold968 GLEAN mRNA 73749 73775 0.999675 + . ID=CGI_10006296; scaffold968 TRF Tandem_Repeat 73749 73775 54 + . . scaffold968 GLEAN mRNA 80016 80075 0.999675 + . ID=CGI_10006296; scaffold968 TRF Tandem_Repeat 80016 80075 66 + . . scaffold968 GLEAN mRNA 80007 80074 0.999675 + . ID=CGI_10006296; scaffold968 TRF Tandem_Repeat 80007 80074 55 + . . scaffold968 GLEAN mRNA 80007 80066 0.999675 + . ID=CGI_10006296; scaffold968 TRF Tandem_Repeat 80007 80066 75 + . . scaffold968 GLEAN mRNA 111134 111208 0.425641 + . ID=CGI_10006297; scaffold968 TRF Tandem_Repeat 111134 111208 143 + . . scaffold968 GLEAN mRNA 114040 114100 0.425641 + . ID=CGI_10006297; scaffold968 TRF Tandem_Repeat 114040 114100 122 + . . scaffold968 GLEAN mRNA 116880 116939 0.425641 + . ID=CGI_10006297; scaffold968 TRF Tandem_Repeat 116880 116939 57 + . . scaffold968 GLEAN mRNA 118348 118708 0.425641 + . ID=CGI_10006297; scaffold968 TRF Tandem_Repeat 118348 118708 332 + . . scaffold968 GLEAN mRNA 118496 118708 0.425641 + . ID=CGI_10006297; scaffold968 TRF Tandem_Repeat 118496 118708 318 + . . scaffold968 GLEAN mRNA 118826 118946 0.425641 + . ID=CGI_10006297; scaffold968 TRF Tandem_Repeat 118826 118946 143 + . . scaffold968 GLEAN mRNA 119373 120161 0.425641 + . ID=CGI_10006297; scaffold968 WUBlastX LINE_CR1 119373 120161 201 + . . scaffold968 GLEAN mRNA 119628 120638 0.425641 + . ID=CGI_10006297; scaffold968 WUBlastX LINE_I 119628 120638 27 + . . scaffold968 GLEAN mRNA 114560 116770 0.425641 + . ID=CGI_10006297; scaffold968 WUBlastX LINE_RTE-X 114560 116770 765 + . . scaffold968 GLEAN mRNA 114350 115366 0.425641 + . ID=CGI_10006297; scaffold968 WUBlastX LINE_RTE-X 114350 115366 249 + . . scaffold42158 GLEAN mRNA 15037 15064 1 - . ID=CGI_10006299; scaffold42158 TRF Tandem_Repeat 15037 15064 56 + . . scaffold42158 GLEAN mRNA 41587 41953 0.98357 + . ID=CGI_10006300; scaffold42158 TRF Tandem_Repeat 41587 41953 671 + . . scaffold42158 GLEAN mRNA 52245 52439 0.99967 - . ID=CGI_10006301; scaffold42158 TRF Tandem_Repeat 52245 52439 273 + . . scaffold42158 GLEAN mRNA 53144 53183 0.99967 - . ID=CGI_10006301; scaffold42158 TRF Tandem_Repeat 53144 53183 80 + . . scaffold42158 GLEAN mRNA 55439 56124 0.99967 - . ID=CGI_10006301; scaffold42158 TRF Tandem_Repeat 55439 56124 1146 + . . scaffold42158 GLEAN mRNA 55439 56124 0.99967 - . ID=CGI_10006301; scaffold42158 TRF Tandem_Repeat 55439 56124 1200 + . . scaffold42158 GLEAN mRNA 57746 58119 0.99967 - . ID=CGI_10006301; scaffold42158 TRF Tandem_Repeat 57746 58119 396 + . . scaffold42158 GLEAN mRNA 60043 61587 0.99967 - . ID=CGI_10006301; scaffold42158 TRF Tandem_Repeat 60043 61587 2586 + . . scaffold42158 GLEAN mRNA 60399 60669 0.99967 - . ID=CGI_10006301; scaffold42158 TRF Tandem_Repeat 60399 60669 72 + . . scaffold42158 GLEAN mRNA 61584 61756 0.99967 - . ID=CGI_10006301; scaffold42158 TRF Tandem_Repeat 61584 61756 292 + . . scaffold42158 GLEAN mRNA 73735 73740 1 - . ID=CGI_10006303; scaffold42158 TRF Tandem_Repeat 73637 73740 199 + . . scaffold42158 GLEAN mRNA 87505 87577 0.312053 + . ID=CGI_10006305; scaffold42158 TRF Tandem_Repeat 87505 87577 146 + . . scaffold42164 GLEAN mRNA 33979 34018 1 + . ID=CGI_10006315; scaffold42164 TRF Tandem_Repeat 33979 34018 80 + . . scaffold42164 GLEAN mRNA 122254 122297 0.999899 - . ID=CGI_10006322; scaffold42164 TRF Tandem_Repeat 122254 122297 88 + . . scaffold42164 GLEAN mRNA 123380 123432 0.999899 - . ID=CGI_10006322; scaffold42164 TRF Tandem_Repeat 123380 123432 97 + . . scaffold42184 GLEAN mRNA 5461 5511 0.90117 - . ID=CGI_10006326; scaffold42184 TRF Tandem_Repeat 5461 5511 66 + . . scaffold42184 GLEAN mRNA 5468 5510 0.90117 - . ID=CGI_10006326; scaffold42184 TRF Tandem_Repeat 5468 5510 50 + . . scaffold42184 GLEAN mRNA 12935 12980 0.90117 - . ID=CGI_10006326; scaffold42184 TRF Tandem_Repeat 12935 12980 57 + . . scaffold42184 GLEAN mRNA 12936 12977 0.90117 - . ID=CGI_10006326; scaffold42184 TRF Tandem_Repeat 12936 12977 50 + . . scaffold42184 GLEAN mRNA 14201 15452 0.90117 - . ID=CGI_10006326; scaffold42184 TRF Tandem_Repeat 14201 15452 1728 + . . scaffold42184 GLEAN mRNA 21938 22142 0.90117 - . ID=CGI_10006326; scaffold42184 TRF Tandem_Repeat 21938 22142 392 + . . scaffold42184 GLEAN mRNA 32017 32205 0.549691 + . ID=CGI_10006327; scaffold42184 TRF Tandem_Repeat 32017 32205 162 + . . scaffold42184 GLEAN mRNA 32060 32217 0.549691 + . ID=CGI_10006327; scaffold42184 TRF Tandem_Repeat 32060 32217 226 + . . scaffold42184 GLEAN mRNA 32899 33051 0.549691 + . ID=CGI_10006327; scaffold42184 TRF Tandem_Repeat 32899 33051 234 + . . scaffold42184 GLEAN mRNA 35163 35526 0.549691 + . ID=CGI_10006327; scaffold42184 TRF Tandem_Repeat 35163 35526 469 + . . scaffold42184 GLEAN mRNA 36491 36958 0.549691 + . ID=CGI_10006327; scaffold42184 TRF Tandem_Repeat 36491 36958 343 + . . scaffold42184 GLEAN mRNA 43622 43993 0.998779 - . ID=CGI_10006328; scaffold42184 TRF Tandem_Repeat 43622 43993 564 + . . scaffold42184 GLEAN mRNA 43622 43993 0.998779 - . ID=CGI_10006328; scaffold42184 TRF Tandem_Repeat 43622 43993 568 + . . scaffold42184 GLEAN mRNA 43920 44179 0.998779 - . ID=CGI_10006328; scaffold42184 TRF Tandem_Repeat 43920 44179 245 + . . scaffold42184 GLEAN mRNA 77919 77949 0.999734 + . ID=CGI_10006329; scaffold42184 TRF Tandem_Repeat 77919 77949 62 + . . scaffold42184 GLEAN mRNA 79655 79702 0.999734 + . ID=CGI_10006329; scaffold42184 TRF Tandem_Repeat 79655 79702 87 + . . scaffold42184 GLEAN mRNA 80606 80794 0.999734 + . ID=CGI_10006329; scaffold42184 TRF Tandem_Repeat 80606 80794 301 + . . scaffold42184 GLEAN mRNA 100199 100226 1 - . ID=CGI_10006331; scaffold42184 TRF Tandem_Repeat 100199 100226 56 + . . scaffold42172 GLEAN mRNA 130372 130447 0.98803 - . ID=CGI_10006334; scaffold42172 TRF Tandem_Repeat 130372 130447 152 + . . scaffold42190 GLEAN mRNA 75246 75306 0.965588 - . ID=CGI_10006336; scaffold42190 TRF Tandem_Repeat 75246 75306 95 + . . scaffold42190 GLEAN mRNA 75243 75306 0.965588 - . ID=CGI_10006336; scaffold42190 TRF Tandem_Repeat 75243 75306 101 + . . scaffold42190 GLEAN mRNA 97999 98075 1 - . ID=CGI_10006338; scaffold42190 TRF Tandem_Repeat 97999 98075 154 + . . scaffold42190 GLEAN mRNA 97999 98075 0.456305 + . ID=CGI_10006339; scaffold42190 TRF Tandem_Repeat 97999 98075 154 + . . scaffold42190 GLEAN mRNA 110767 110803 0.456305 + . ID=CGI_10006339; scaffold42190 TRF Tandem_Repeat 110767 110803 65 + . . scaffold42190 GLEAN mRNA 110767 110806 0.456305 + . ID=CGI_10006339; scaffold42190 TRF Tandem_Repeat 110767 110806 53 + . . scaffold42190 GLEAN mRNA 117136 117358 0.456305 + . ID=CGI_10006339; scaffold42190 TRF Tandem_Repeat 117136 117358 322 + . . scaffold929 GLEAN mRNA 124656 125306 0.987262 + . ID=CGI_10006345; scaffold929 WUBlastX LINE_CR1-L2 124656 125306 26 + . . scaffold929 GLEAN mRNA 124599 124916 0.987262 + . ID=CGI_10006345; scaffold929 WUBlastX LINE_CR1-L2 124599 124916 43 + . . scaffold929 GLEAN mRNA 124656 124916 0.987262 + . ID=CGI_10006345; scaffold929 WUBlastX LINE_CR1-L2 124656 124916 69 + . . scaffold929 GLEAN mRNA 147723 147778 1 + . ID=CGI_10006347; scaffold929 TRF Tandem_Repeat 147723 147778 112 + . . scaffold42208 GLEAN mRNA 23742 23856 0.558382 + . ID=CGI_10006349; scaffold42208 TRF Tandem_Repeat 23742 23856 83 + . . scaffold42208 GLEAN mRNA 43172 43205 0.99733 - . ID=CGI_10006350; scaffold42208 TRF Tandem_Repeat 43172 43205 68 + . . scaffold42208 GLEAN mRNA 42531 42701 0.99733 - . ID=CGI_10006350; scaffold42208 WUBlastX LINE_CR1-L2 42531 42701 50 + . . scaffold42208 GLEAN mRNA 64771 64832 1 + . ID=CGI_10006351; scaffold42208 TRF Tandem_Repeat 64771 64832 117 + . . scaffold868 GLEAN mRNA 11488 11521 0.558382 + . ID=CGI_10006353; scaffold868 TRF Tandem_Repeat 11488 11521 68 + . . scaffold868 GLEAN mRNA 11519 11555 0.558382 + . ID=CGI_10006353; scaffold868 TRF Tandem_Repeat 11519 11555 74 + . . scaffold868 GLEAN mRNA 11607 11636 0.558382 + . ID=CGI_10006353; scaffold868 TRF Tandem_Repeat 11607 11636 60 + . . scaffold868 GLEAN mRNA 49630 49691 0.999797 - . ID=CGI_10006356; scaffold868 TRF Tandem_Repeat 49630 49691 117 + . . scaffold868 GLEAN mRNA 58495 59142 0.992348 - . ID=CGI_10006358; scaffold868 TRF Tandem_Repeat 58495 59142 888 + . . scaffold868 GLEAN mRNA 93312 94011 0.999096 - . ID=CGI_10006359; scaffold868 TRF Tandem_Repeat 93312 94011 869 + . . scaffold868 GLEAN mRNA 94022 94076 0.999096 - . ID=CGI_10006359; scaffold868 TRF Tandem_Repeat 94022 94076 92 + . . scaffold868 GLEAN mRNA 94015 94077 0.999096 - . ID=CGI_10006359; scaffold868 TRF Tandem_Repeat 94015 94077 81 + . . scaffold868 GLEAN mRNA 95858 96607 0.999096 - . ID=CGI_10006359; scaffold868 TRF Tandem_Repeat 95858 96607 1279 + . . scaffold868 GLEAN mRNA 106993 107575 0.999096 - . ID=CGI_10006359; scaffold868 TRF Tandem_Repeat 106993 107575 380 + . . scaffold868 GLEAN mRNA 107057 107552 0.999096 - . ID=CGI_10006359; scaffold868 TRF Tandem_Repeat 107057 107552 437 + . . scaffold868 GLEAN mRNA 108142 108233 0.999096 - . ID=CGI_10006359; scaffold868 TRF Tandem_Repeat 108142 108233 105 + . . scaffold868 GLEAN mRNA 108592 108631 0.999096 - . ID=CGI_10006359; scaffold868 TRF Tandem_Repeat 108592 108631 62 + . . scaffold42226 GLEAN mRNA 22318 22361 0.902884 - . ID=CGI_10006360; scaffold42226 TRF Tandem_Repeat 22318 22361 52 + . . scaffold42226 GLEAN mRNA 24683 24740 0.902884 - . ID=CGI_10006360; scaffold42226 TRF Tandem_Repeat 24683 24740 107 + . . scaffold42226 GLEAN mRNA 25284 25329 0.902884 - . ID=CGI_10006360; scaffold42226 TRF Tandem_Repeat 25284 25329 92 + . . scaffold42226 GLEAN mRNA 33494 33624 0.902884 - . ID=CGI_10006360; scaffold42226 TRF Tandem_Repeat 33494 33624 246 + . . scaffold42226 GLEAN mRNA 34785 34884 0.902884 - . ID=CGI_10006360; scaffold42226 TRF Tandem_Repeat 34785 34884 191 + . . scaffold42226 GLEAN mRNA 37139 37893 0.902884 - . ID=CGI_10006360; scaffold42226 TRF Tandem_Repeat 37139 37893 340 + . . scaffold42226 GLEAN mRNA 37139 37893 0.902884 - . ID=CGI_10006360; scaffold42226 TRF Tandem_Repeat 37139 37893 568 + . . scaffold42226 GLEAN mRNA 37139 37893 0.902884 - . ID=CGI_10006360; scaffold42226 TRF Tandem_Repeat 37139 37893 477 + . . scaffold42226 GLEAN mRNA 37464 37893 0.902884 - . ID=CGI_10006360; scaffold42226 TRF Tandem_Repeat 37464 37893 577 + . . scaffold42226 GLEAN mRNA 39006 39202 0.902884 - . ID=CGI_10006360; scaffold42226 TRF Tandem_Repeat 39006 39202 170 + . . scaffold42226 GLEAN mRNA 15269 17011 0.902884 - . ID=CGI_10006360; scaffold42226 TRF Tandem_Repeat 15269 17011 2521 + . . scaffold42226 GLEAN mRNA 44503 44728 0.999993 + . ID=CGI_10006361; scaffold42226 TRF Tandem_Repeat 44503 44728 389 + . . scaffold42226 GLEAN mRNA 57296 57697 0.999993 + . ID=CGI_10006361; scaffold42226 TRF Tandem_Repeat 57296 57697 544 + . . scaffold42226 GLEAN mRNA 58841 59531 0.999993 + . ID=CGI_10006361; scaffold42226 TRF Tandem_Repeat 58841 59531 622 + . . scaffold42226 GLEAN mRNA 59185 59506 0.999993 + . ID=CGI_10006361; scaffold42226 TRF Tandem_Repeat 59185 59506 365 + . . scaffold42226 GLEAN mRNA 58867 59506 0.999993 + . ID=CGI_10006361; scaffold42226 TRF Tandem_Repeat 58867 59506 462 + . . scaffold42226 GLEAN mRNA 75585 76289 0.880293 - . ID=CGI_10006362; scaffold42226 TRF Tandem_Repeat 75585 76289 265 + . . scaffold42226 GLEAN mRNA 75593 76289 0.880293 - . ID=CGI_10006362; scaffold42226 TRF Tandem_Repeat 75593 76289 821 + . . scaffold42226 GLEAN mRNA 77713 78163 0.880293 - . ID=CGI_10006362; scaffold42226 TRF Tandem_Repeat 77713 78163 595 + . . scaffold42226 GLEAN mRNA 78522 78662 0.880293 - . ID=CGI_10006362; scaffold42226 TRF Tandem_Repeat 78522 78662 208 + . . scaffold42226 GLEAN mRNA 81252 81403 0.880293 - . ID=CGI_10006362; scaffold42226 TRF Tandem_Repeat 81252 81403 208 + . . scaffold42226 GLEAN mRNA 82647 82730 0.880293 - . ID=CGI_10006362; scaffold42226 TRF Tandem_Repeat 82647 82730 64 + . . scaffold42226 GLEAN mRNA 82915 83180 0.880293 - . ID=CGI_10006362; scaffold42226 TRF Tandem_Repeat 82915 83180 198 + . . scaffold42226 GLEAN mRNA 83046 83130 0.880293 - . ID=CGI_10006362; scaffold42226 TRF Tandem_Repeat 83046 83130 80 + . . scaffold42226 GLEAN mRNA 84150 84187 0.880293 - . ID=CGI_10006362; scaffold42226 TRF Tandem_Repeat 84150 84187 58 + . . scaffold42226 GLEAN mRNA 81260 82284 0.880293 - . ID=CGI_10006362; scaffold42226 TRF Tandem_Repeat 81260 82284 1088 + . . scaffold42226 GLEAN mRNA 81483 82354 0.880293 - . ID=CGI_10006362; scaffold42226 TRF Tandem_Repeat 81483 82354 814 + . . scaffold42226 GLEAN mRNA 81499 82373 0.880293 - . ID=CGI_10006362; scaffold42226 TRF Tandem_Repeat 81499 82373 766 + . . scaffold42226 GLEAN mRNA 101683 101825 0.999648 + . ID=CGI_10006363; scaffold42226 TRF Tandem_Repeat 101683 101825 153 + . . scaffold42226 GLEAN mRNA 112804 113028 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX LINE_RTE-X 112804 113028 53 + . . scaffold42226 GLEAN mRNA 121725 121985 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX DNA_Kolobok 121725 121985 148 - . . scaffold42226 GLEAN mRNA 119075 119317 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX DNA_Kolobok 119075 119317 139 + . . scaffold42226 GLEAN mRNA 121366 121638 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX DNA_Kolobok 121366 121638 87 - . . scaffold42226 GLEAN mRNA 120356 120592 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX DNA_Kolobok 120356 120592 100 - . . scaffold42226 GLEAN mRNA 120758 120952 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX DNA_Kolobok 120758 120952 72 - . . scaffold42226 GLEAN mRNA 121087 121302 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX DNA_Kolobok 121087 121302 41 - . . scaffold42226 GLEAN mRNA 122100 122381 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX DNA_Kolobok 122100 122381 96 - . . scaffold1586 GLEAN mRNA 17712 17765 0.651135 + . ID=CGI_10006366; scaffold1586 TRF Tandem_Repeat 17712 17765 58 + . . scaffold1586 GLEAN mRNA 17892 17936 0.651135 + . ID=CGI_10006366; scaffold1586 TRF Tandem_Repeat 17892 17936 90 + . . scaffold1586 GLEAN mRNA 22411 22462 0.651135 + . ID=CGI_10006366; scaffold1586 TRF Tandem_Repeat 22411 22462 95 + . . scaffold1586 GLEAN mRNA 43723 43771 0.790901 + . ID=CGI_10006367; scaffold1586 TRF Tandem_Repeat 43723 43771 98 + . . scaffold1586 GLEAN mRNA 45109 45157 0.790901 + . ID=CGI_10006367; scaffold1586 TRF Tandem_Repeat 45109 45157 98 + . . scaffold1586 GLEAN mRNA 48124 48175 0.790901 + . ID=CGI_10006367; scaffold1586 TRF Tandem_Repeat 48124 48175 52 + . . scaffold1586 GLEAN mRNA 128473 128476 1 - . ID=CGI_10006373; scaffold1586 TRF Tandem_Repeat 128437 128476 80 + . . scaffold1586 GLEAN mRNA 133489 133721 1 - . ID=CGI_10006373; scaffold1586 TRF Tandem_Repeat 133489 133721 315 + . . scaffold1586 GLEAN mRNA 133938 134083 1 - . ID=CGI_10006373; scaffold1586 TRF Tandem_Repeat 133938 134083 249 + . . scaffold1586 GLEAN mRNA 134780 134814 1 - . ID=CGI_10006373; scaffold1586 TRF Tandem_Repeat 134780 134814 54 + . . scaffold1586 GLEAN mRNA 134761 134817 1 - . ID=CGI_10006373; scaffold1586 TRF Tandem_Repeat 134761 134817 54 + . . scaffold1586 GLEAN mRNA 134762 134825 1 - . ID=CGI_10006373; scaffold1586 TRF Tandem_Repeat 134762 134825 56 + . . scaffold1586 GLEAN mRNA 145040 145096 0.999999 - . ID=CGI_10006374; scaffold1586 TRF Tandem_Repeat 145040 145096 55 + . . scaffold1586 GLEAN mRNA 147164 147221 0.999999 - . ID=CGI_10006374; scaffold1586 TRF Tandem_Repeat 147164 147221 107 + . . scaffold1586 GLEAN mRNA 149131 149292 0.999999 - . ID=CGI_10006374; scaffold1586 TRF Tandem_Repeat 149131 149292 274 + . . scaffold1774 GLEAN mRNA 47754 47813 0.563353 + . ID=CGI_10006376; scaffold1774 WUBlastX DNA_Kolobok 47754 47813 25 + . . scaffold1774 GLEAN mRNA 48204 49013 0.563353 + . ID=CGI_10006376; scaffold1774 WUBlastX DNA_Kolobok 48204 49013 75 + . . scaffold1774 GLEAN mRNA 48375 49025 0.563353 + . ID=CGI_10006376; scaffold1774 WUBlastX DNA_Kolobok 48375 49025 120 + . . scaffold1774 GLEAN mRNA 49875 50021 0.563353 + . ID=CGI_10006376; scaffold1774 WUBlastX DNA_Kolobok 49875 50021 32 + . . scaffold1774 GLEAN mRNA 49027 49986 0.563353 + . ID=CGI_10006376; scaffold1774 WUBlastX DNA_Kolobok 49027 49986 578 + . . scaffold1774 GLEAN mRNA 75205 75258 0.962777 - . ID=CGI_10006381; scaffold1774 TRF Tandem_Repeat 75205 75258 108 + . . scaffold1774 GLEAN mRNA 75258 75309 0.962777 - . ID=CGI_10006381; scaffold1774 TRF Tandem_Repeat 75258 75309 104 + . . scaffold1774 GLEAN mRNA 80532 80936 0.999675 + . ID=CGI_10006382; scaffold1774 TRF Tandem_Repeat 80532 80936 418 + . . scaffold1774 GLEAN mRNA 88016 88146 0.615403 + . ID=CGI_10006383; scaffold1774 TRF Tandem_Repeat 88016 88146 151 + . . scaffold1774 GLEAN mRNA 88387 88419 0.615403 + . ID=CGI_10006383; scaffold1774 TRF Tandem_Repeat 88387 88419 66 + . . scaffold1774 GLEAN mRNA 88477 88510 0.615403 + . ID=CGI_10006383; scaffold1774 TRF Tandem_Repeat 88477 88510 50 + . . scaffold1774 GLEAN mRNA 88512 88537 0.615403 + . ID=CGI_10006383; scaffold1774 TRF Tandem_Repeat 88512 88537 52 + . . scaffold1774 GLEAN mRNA 89062 89110 0.615403 + . ID=CGI_10006383; scaffold1774 TRF Tandem_Repeat 89062 89110 89 + . . scaffold1774 GLEAN mRNA 89335 89465 0.615403 + . ID=CGI_10006383; scaffold1774 TRF Tandem_Repeat 89335 89465 142 + . . scaffold1774 GLEAN mRNA 89336 89465 0.615403 + . ID=CGI_10006383; scaffold1774 TRF Tandem_Repeat 89336 89465 158 + . . scaffold1774 GLEAN mRNA 95063 95133 0.9628 - . ID=CGI_10006384; scaffold1774 TRF Tandem_Repeat 95063 95133 142 + . . scaffold1774 GLEAN mRNA 96534 96580 0.9628 - . ID=CGI_10006384; scaffold1774 TRF Tandem_Repeat 96534 96580 94 + . . scaffold1774 GLEAN mRNA 96580 96612 0.9628 - . ID=CGI_10006384; scaffold1774 TRF Tandem_Repeat 96580 96612 57 + . . scaffold1774 GLEAN mRNA 95063 95133 0.724541 + . ID=CGI_10006385; scaffold1774 TRF Tandem_Repeat 95063 95133 142 + . . scaffold1774 GLEAN mRNA 96534 96580 0.724541 + . ID=CGI_10006385; scaffold1774 TRF Tandem_Repeat 96534 96580 94 + . . scaffold1774 GLEAN mRNA 96580 96612 0.724541 + . ID=CGI_10006385; scaffold1774 TRF Tandem_Repeat 96580 96612 57 + . . scaffold1774 GLEAN mRNA 130990 131042 0.913863 + . ID=CGI_10006387; scaffold1774 TRF Tandem_Repeat 130990 131042 54 + . . scaffold1774 GLEAN mRNA 142476 142542 0.9993 - . ID=CGI_10006388; scaffold1774 TRF Tandem_Repeat 142476 142542 89 + . . scaffold1774 GLEAN mRNA 143037 143070 0.9993 - . ID=CGI_10006388; scaffold1774 TRF Tandem_Repeat 143037 143070 68 + . . scaffold1774 GLEAN mRNA 143271 143336 0.9993 - . ID=CGI_10006388; scaffold1774 TRF Tandem_Repeat 143271 143336 123 + . . scaffold1774 GLEAN mRNA 147971 148037 0.9993 - . ID=CGI_10006388; scaffold1774 TRF Tandem_Repeat 147971 148037 80 + . . scaffold42210 GLEAN mRNA 99548 99573 0.591926 + . ID=CGI_10006389; scaffold42210 TRF Tandem_Repeat 99548 99573 52 + . . scaffold42210 GLEAN mRNA 106792 106842 0.591926 + . ID=CGI_10006389; scaffold42210 TRF Tandem_Repeat 106792 106842 50 + . . scaffold42210 GLEAN mRNA 106799 106842 0.591926 + . ID=CGI_10006389; scaffold42210 TRF Tandem_Repeat 106799 106842 54 + . . scaffold42210 GLEAN mRNA 101065 101865 0.591926 + . ID=CGI_10006389; scaffold42210 WUBlastX LINE_L1-Tx1 101065 101865 254 + . . scaffold42210 GLEAN mRNA 103393 103527 0.591926 + . ID=CGI_10006389; scaffold42210 WUBlastX LINE_L1 103393 103527 28 + . . scaffold42210 GLEAN mRNA 99791 99952 0.591926 + . ID=CGI_10006389; scaffold42210 WUBlastX LINE_L1-Tx1 99791 99952 22 + . . scaffold42210 GLEAN mRNA 100191 100421 0.591926 + . ID=CGI_10006389; scaffold42210 WUBlastX LINE_L1-Tx1 100191 100421 72 + . . scaffold42210 GLEAN mRNA 100436 101128 0.591926 + . ID=CGI_10006389; scaffold42210 WUBlastX LINE_L1-Tx1 100436 101128 161 + . . scaffold42210 GLEAN mRNA 101356 101904 0.591926 + . ID=CGI_10006389; scaffold42210 WUBlastX LINE_L1-Tx1 101356 101904 381 + . . scaffold42210 GLEAN mRNA 101869 103503 0.591926 + . ID=CGI_10006389; scaffold42210 WUBlastX LINE_L1-Tx1 101869 103503 433 + . . scaffold42210 GLEAN mRNA 138908 139128 1 + . ID=CGI_10006390; scaffold42210 TRF Tandem_Repeat 138908 139128 194 + . . scaffold42210 GLEAN mRNA 139155 139347 1 + . ID=CGI_10006390; scaffold42210 TRF Tandem_Repeat 139155 139347 192 + . . scaffold42210 GLEAN mRNA 139155 139347 1 + . ID=CGI_10006390; scaffold42210 TRF Tandem_Repeat 139155 139347 170 + . . scaffold42210 GLEAN mRNA 139413 139498 1 + . ID=CGI_10006390; scaffold42210 TRF Tandem_Repeat 139413 139498 91 + . . scaffold42210 GLEAN mRNA 140551 140597 1 + . ID=CGI_10006390; scaffold42210 TRF Tandem_Repeat 140551 140597 94 + . . scaffold42210 GLEAN mRNA 141418 141473 1 + . ID=CGI_10006390; scaffold42210 TRF Tandem_Repeat 141418 141473 112 + . . scaffold42198 GLEAN mRNA 65263 65490 0.481188 + . ID=CGI_10006393; scaffold42198 WUBlastX LINE_RTE-BovB 65206 65490 27 + . . scaffold42236 GLEAN mRNA 32269 32412 0.500069 - . ID=CGI_10006397; scaffold42236 TRF Tandem_Repeat 32269 32412 53 + . . scaffold42236 GLEAN mRNA 32291 32413 0.500069 - . ID=CGI_10006397; scaffold42236 TRF Tandem_Repeat 32291 32413 108 + . . scaffold42236 GLEAN mRNA 20969 21355 0.500069 - . ID=CGI_10006397; scaffold42236 WUBlastX LINE_L1 20969 21355 34 + . . scaffold42236 GLEAN mRNA 20969 21355 0.783967 + . ID=CGI_10006398; scaffold42236 WUBlastX LINE_L1 20969 21355 34 + . . scaffold42236 GLEAN mRNA 60153 60218 0.999655 + . ID=CGI_10006401; scaffold42236 TRF Tandem_Repeat 60153 60218 123 + . . scaffold42236 GLEAN mRNA 115782 115822 0.999117 + . ID=CGI_10006406; scaffold42236 TRF Tandem_Repeat 115782 115822 82 + . . scaffold42236 GLEAN mRNA 126361 126456 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 126361 126456 54 + . . scaffold42236 GLEAN mRNA 126644 127126 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 126644 127126 127 + . . scaffold42236 GLEAN mRNA 119031 119102 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 119031 119102 35 + . . scaffold42236 GLEAN mRNA 119339 119560 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 119339 119560 160 + . . scaffold42236 GLEAN mRNA 127381 127524 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 127381 127524 47 + . . scaffold42236 GLEAN mRNA 129454 129585 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 129454 129585 56 + . . scaffold42236 GLEAN mRNA 129699 129764 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 129699 129764 23 + . . scaffold42236 GLEAN mRNA 129980 130369 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 129980 130369 289 + . . scaffold42236 GLEAN mRNA 132561 132698 0.999117 + . ID=CGI_10006406; scaffold42236 WUBlastX DNA_hAT 132561 132698 68 + . . scaffold42214 GLEAN mRNA 111376 111424 0.999424 + . ID=CGI_10006416; scaffold42214 TRF Tandem_Repeat 111376 111424 89 + . . scaffold42214 GLEAN mRNA 132647 132700 0.593342 + . ID=CGI_10006419; scaffold42214 TRF Tandem_Repeat 132647 132700 101 + . . scaffold1848 GLEAN mRNA 60596 60647 0.497688 - . ID=CGI_10006425; scaffold1848 TRF Tandem_Repeat 60596 60647 70 + . . scaffold1848 GLEAN mRNA 77231 77833 0.748182 - . ID=CGI_10006426; scaffold1848 TRF Tandem_Repeat 77231 77833 620 + . . scaffold1848 GLEAN mRNA 92165 94351 0.748182 - . ID=CGI_10006426; scaffold1848 TRF Tandem_Repeat 92165 94351 2733 + . . scaffold1848 GLEAN mRNA 77231 77833 0.499408 + . ID=CGI_10006427; scaffold1848 TRF Tandem_Repeat 77231 77833 620 + . . scaffold1848 GLEAN mRNA 92165 94351 0.499408 + . ID=CGI_10006427; scaffold1848 TRF Tandem_Repeat 92165 94351 2733 + . . scaffold65 GLEAN mRNA 75805 76063 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 75805 76063 293 + . . scaffold65 GLEAN mRNA 75950 76037 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 75950 76037 50 + . . scaffold65 GLEAN mRNA 76523 76564 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 76523 76564 84 + . . scaffold65 GLEAN mRNA 82708 82742 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 82708 82742 70 + . . scaffold65 GLEAN mRNA 82893 82942 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 82893 82942 64 + . . scaffold65 GLEAN mRNA 84936 85032 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 84936 85032 104 + . . scaffold65 GLEAN mRNA 86875 87024 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 86875 87024 89 + . . scaffold65 GLEAN mRNA 86891 87016 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 86891 87016 108 + . . scaffold65 GLEAN mRNA 100048 100549 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 100048 100549 782 + . . scaffold65 GLEAN mRNA 100048 100545 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 100048 100545 763 + . . scaffold65 GLEAN mRNA 101712 101969 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 101712 101969 275 + . . scaffold65 GLEAN mRNA 104490 105018 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 104490 105018 871 + . . scaffold65 GLEAN mRNA 106233 106819 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 106233 106819 961 + . . scaffold65 GLEAN mRNA 144372 144418 0.996591 - . ID=CGI_10006431; scaffold65 TRF Tandem_Repeat 144372 144418 94 + . . scaffold276 GLEAN mRNA 8430 8470 0.648919 + . ID=CGI_10006433; scaffold276 TRF Tandem_Repeat 8430 8470 73 + . . scaffold276 GLEAN mRNA 24790 24924 0.999985 + . ID=CGI_10006434; scaffold276 WUBlastX DNA_IS4EU 24790 24924 54 + . . scaffold276 GLEAN mRNA 25631 25855 0.999985 + . ID=CGI_10006434; scaffold276 WUBlastX DNA_IS4EU 25631 25855 23 + . . scaffold276 GLEAN mRNA 29613 29945 0.425332 - . ID=CGI_10006435; scaffold276 WUBlastX DNA_P 29613 29945 42 - . . scaffold276 GLEAN mRNA 27408 28088 0.425332 - . ID=CGI_10006435; scaffold276 WUBlastX DNA_Kolobok-IS4 27408 28088 388 - . . scaffold276 GLEAN mRNA 30469 30549 0.425332 - . ID=CGI_10006435; scaffold276 WUBlastX DNA_IS4EU 30469 30549 20 - . . scaffold276 GLEAN mRNA 29781 29948 0.425332 - . ID=CGI_10006435; scaffold276 WUBlastX DNA_P 29781 29948 50 - . . scaffold276 GLEAN mRNA 28500 28679 0.425332 - . ID=CGI_10006435; scaffold276 WUBlastX DNA_IS4EU 28500 28679 36 - . . scaffold276 GLEAN mRNA 29838 29954 0.425332 - . ID=CGI_10006435; scaffold276 WUBlastX DNA_P 29838 29954 53 - . . scaffold276 GLEAN mRNA 29685 29957 0.425332 - . ID=CGI_10006435; scaffold276 WUBlastX DNA_P 29685 29957 45 - . . scaffold276 GLEAN mRNA 33883 34017 0.425332 - . ID=CGI_10006435; scaffold276 WUBlastX DNA_Harbinger 33883 34017 32 - . . scaffold276 GLEAN mRNA 38469 39899 0.597584 - . ID=CGI_10006436; scaffold276 TRF Tandem_Repeat 38469 39899 2214 + . . scaffold276 GLEAN mRNA 43393 43443 0.597584 - . ID=CGI_10006436; scaffold276 TRF Tandem_Repeat 43393 43443 95 + . . scaffold276 GLEAN mRNA 80441 80481 1 + . ID=CGI_10006438; scaffold276 TRF Tandem_Repeat 80441 80481 82 + . . scaffold276 GLEAN mRNA 92941 92988 0.999674 - . ID=CGI_10006439; scaffold276 TRF Tandem_Repeat 92941 92988 96 + . . scaffold276 GLEAN mRNA 118433 118468 0.998077 + . ID=CGI_10006440; scaffold276 TRF Tandem_Repeat 118433 118468 54 + . . scaffold276 GLEAN mRNA 118601 118649 0.998077 + . ID=CGI_10006440; scaffold276 TRF Tandem_Repeat 118601 118649 89 + . . scaffold1867 GLEAN mRNA 23584 23625 0.498633 - . ID=CGI_10006442; scaffold1867 TRF Tandem_Repeat 23584 23625 84 + . . scaffold1867 GLEAN mRNA 52432 53503 0.805639 - . ID=CGI_10006445; scaffold1867 TRF Tandem_Repeat 52432 53503 1307 + . . scaffold1867 GLEAN mRNA 52432 53503 0.805639 - . ID=CGI_10006445; scaffold1867 TRF Tandem_Repeat 52432 53503 1451 + . . scaffold1867 GLEAN mRNA 54031 54358 0.805639 - . ID=CGI_10006445; scaffold1867 TRF Tandem_Repeat 54031 54358 512 + . . scaffold1867 GLEAN mRNA 60234 60296 0.805639 - . ID=CGI_10006445; scaffold1867 TRF Tandem_Repeat 60234 60296 126 + . . scaffold1867 GLEAN mRNA 73390 73421 0.805639 - . ID=CGI_10006445; scaffold1867 TRF Tandem_Repeat 73390 73421 64 + . . scaffold1867 GLEAN mRNA 75512 75592 0.805639 - . ID=CGI_10006445; scaffold1867 TRF Tandem_Repeat 75512 75592 162 + . . scaffold1867 GLEAN mRNA 77484 77516 0.805639 - . ID=CGI_10006445; scaffold1867 TRF Tandem_Repeat 77484 77516 66 + . . scaffold1867 GLEAN mRNA 103225 103316 0.989687 + . ID=CGI_10006446; scaffold1867 TRF Tandem_Repeat 103225 103316 112 + . . scaffold1867 GLEAN mRNA 105219 105260 0.989687 + . ID=CGI_10006446; scaffold1867 WUBlastX DNA_Kolobok-Hyd 105219 105260 30 + . . scaffold1867 GLEAN mRNA 105528 106283 0.989687 + . ID=CGI_10006446; scaffold1867 WUBlastX DNA_Kolobok-Hyd 105528 106283 84 + . . scaffold1867 GLEAN mRNA 106707 106868 0.989687 + . ID=CGI_10006446; scaffold1867 WUBlastX DNA_Kolobok-Hyd 106707 106868 21 + . . scaffold1096 GLEAN mRNA 8966 8997 0.999259 + . ID=CGI_10006447; scaffold1096 TRF Tandem_Repeat 8966 8997 64 + . . scaffold1096 GLEAN mRNA 9258 9286 0.999259 + . ID=CGI_10006447; scaffold1096 TRF Tandem_Repeat 9258 9699 683 + . . scaffold1096 GLEAN mRNA 76822 76853 0.788854 + . ID=CGI_10006453; scaffold1096 TRF Tandem_Repeat 76822 76853 55 + . . scaffold1096 GLEAN mRNA 77477 77516 0.788854 + . ID=CGI_10006453; scaffold1096 TRF Tandem_Repeat 77477 77516 80 + . . scaffold1096 GLEAN mRNA 66561 67166 0.788854 + . ID=CGI_10006453; scaffold1096 WUBlastX LTR_Gypsy 66561 67166 525 - . . scaffold1096 GLEAN mRNA 67166 67405 0.788854 + . ID=CGI_10006453; scaffold1096 WUBlastX LTR_Gypsy 67166 67405 102 - . . scaffold1096 GLEAN mRNA 68116 68997 0.788854 + . ID=CGI_10006453; scaffold1096 WUBlastX LTR_Gypsy 68116 68997 157 - . . scaffold1096 GLEAN mRNA 67330 67506 0.788854 + . ID=CGI_10006453; scaffold1096 WUBlastX LTR_Gypsy 67330 67506 61 - . . scaffold1096 GLEAN mRNA 66076 66705 0.788854 + . ID=CGI_10006453; scaffold1096 WUBlastX LTR_Gypsy 66076 66705 128 - . . scaffold1096 GLEAN mRNA 100112 100173 0.688093 - . ID=CGI_10006455; scaffold1096 TRF Tandem_Repeat 100112 100173 73 + . . scaffold1096 GLEAN mRNA 100104 100173 0.688093 - . ID=CGI_10006455; scaffold1096 TRF Tandem_Repeat 100104 100173 122 + . . scaffold1096 GLEAN mRNA 100110 100173 0.688093 - . ID=CGI_10006455; scaffold1096 TRF Tandem_Repeat 100110 100173 63 + . . scaffold1096 GLEAN mRNA 101788 101847 0.688093 - . ID=CGI_10006455; scaffold1096 TRF Tandem_Repeat 101788 101847 120 + . . scaffold1096 GLEAN mRNA 108489 108543 0.688093 - . ID=CGI_10006455; scaffold1096 TRF Tandem_Repeat 108489 108543 83 + . . scaffold1096 GLEAN mRNA 110637 110678 0.688093 - . ID=CGI_10006455; scaffold1096 TRF Tandem_Repeat 110637 110678 84 + . . scaffold1096 GLEAN mRNA 127259 127393 0.984969 + . ID=CGI_10006456; scaffold1096 WUBlastX DNA_TcMar-Fot1 127259 127393 71 + . . scaffold1096 GLEAN mRNA 127313 127426 0.984969 + . ID=CGI_10006456; scaffold1096 WUBlastX DNA_TcMar-Fot1 127313 127426 51 + . . scaffold1096 GLEAN mRNA 147183 147232 0.818675 + . ID=CGI_10006457; scaffold1096 TRF Tandem_Repeat 147183 147232 100 + . . scaffold1096 GLEAN mRNA 151253 151327 0.818675 + . ID=CGI_10006457; scaffold1096 TRF Tandem_Repeat 151253 151327 107 + . . scaffold998 GLEAN mRNA 6657 6926 0.410057 + . ID=CGI_10006458; scaffold998 TRF Tandem_Repeat 6657 6926 285 + . . scaffold998 GLEAN mRNA 7688 8149 0.410057 + . ID=CGI_10006458; scaffold998 TRF Tandem_Repeat 7688 8149 453 + . . scaffold998 GLEAN mRNA 8334 8738 0.410057 + . ID=CGI_10006458; scaffold998 TRF Tandem_Repeat 8334 8738 463 + . . scaffold998 GLEAN mRNA 46907 46999 0.812368 + . ID=CGI_10006460; scaffold998 TRF Tandem_Repeat 46907 46999 117 + . . scaffold998 GLEAN mRNA 50460 50504 0.812368 + . ID=CGI_10006460; scaffold998 WUBlastX LINE_RTE-BovB 50460 50504 34 + . . scaffold998 GLEAN mRNA 50500 50601 0.812368 + . ID=CGI_10006460; scaffold998 WUBlastX LINE_RTE-BovB 50500 50601 87 + . . scaffold998 GLEAN mRNA 78274 78315 0.721465 + . ID=CGI_10006462; scaffold998 TRF Tandem_Repeat 78274 78315 68 + . . scaffold998 GLEAN mRNA 79147 79217 0.721465 + . ID=CGI_10006462; scaffold998 TRF Tandem_Repeat 79147 79217 142 + . . scaffold998 GLEAN mRNA 80321 80437 0.721465 + . ID=CGI_10006462; scaffold998 TRF Tandem_Repeat 80321 80437 74 + . . scaffold998 GLEAN mRNA 92516 92559 0.99895 - . ID=CGI_10006464; scaffold998 TRF Tandem_Repeat 92516 92559 70 + . . scaffold998 GLEAN mRNA 102797 102828 0.99895 - . ID=CGI_10006464; scaffold998 TRF Tandem_Repeat 102797 102828 64 + . . scaffold998 GLEAN mRNA 103109 103153 0.99895 - . ID=CGI_10006464; scaffold998 TRF Tandem_Repeat 103109 103153 90 + . . scaffold998 GLEAN mRNA 127657 128046 0.996071 - . ID=CGI_10006465; scaffold998 WUBlastX LINE_L2 127657 128046 25 + . . scaffold998 GLEAN mRNA 123552 123821 0.996071 - . ID=CGI_10006465; scaffold998 WUBlastX LINE_L2 123552 123821 62 + . . scaffold998 GLEAN mRNA 125880 126593 0.996071 - . ID=CGI_10006465; scaffold998 WUBlastX LINE_L1-Tx1 125880 126593 71 + . . scaffold998 GLEAN mRNA 126571 127287 0.996071 - . ID=CGI_10006465; scaffold998 WUBlastX LINE_L1-Tx1 126571 127287 140 + . . scaffold42252 GLEAN mRNA 79910 80616 0.811055 - . ID=CGI_10006467; scaffold42252 TRF Tandem_Repeat 79910 80616 914 + . . scaffold42252 GLEAN mRNA 80621 80670 0.811055 - . ID=CGI_10006467; scaffold42252 TRF Tandem_Repeat 80621 80670 64 + . . scaffold42252 GLEAN mRNA 80624 80675 0.811055 - . ID=CGI_10006467; scaffold42252 TRF Tandem_Repeat 80624 80675 59 + . . scaffold42252 GLEAN mRNA 141342 141426 1 + . ID=CGI_10006471; scaffold42252 TRF Tandem_Repeat 141342 141426 154 + . . scaffold42252 GLEAN mRNA 145734 145801 0.996445 - . ID=CGI_10006472; scaffold42252 TRF Tandem_Repeat 145734 145801 136 + . . scaffold42252 GLEAN mRNA 145913 145937 0.996445 - . ID=CGI_10006472; scaffold42252 TRF Tandem_Repeat 145913 145937 50 + . . scaffold42252 GLEAN mRNA 148532 148657 0.996445 - . ID=CGI_10006472; scaffold42252 TRF Tandem_Repeat 148532 148657 82 + . . scaffold42246 GLEAN mRNA 11598 11718 0.65558 + . ID=CGI_10006474; scaffold42246 TRF Tandem_Repeat 11598 11718 138 + . . scaffold42246 GLEAN mRNA 13583 13635 0.65558 + . ID=CGI_10006474; scaffold42246 TRF Tandem_Repeat 13583 13635 90 + . . scaffold42246 GLEAN mRNA 19369 19565 0.65558 + . ID=CGI_10006474; scaffold42246 TRF Tandem_Repeat 19369 19565 148 + . . scaffold42246 GLEAN mRNA 45098 45452 0.65558 + . ID=CGI_10006474; scaffold42246 TRF Tandem_Repeat 45098 45452 264 + . . scaffold42246 GLEAN mRNA 46676 46780 0.65558 + . ID=CGI_10006474; scaffold42246 WUBlastX DNA_hAT 46676 46780 33 + . . scaffold42246 GLEAN mRNA 47144 47350 0.65558 + . ID=CGI_10006474; scaffold42246 WUBlastX DNA_hAT 47144 47350 47 + . . scaffold42246 GLEAN mRNA 43911 44600 0.65558 + . ID=CGI_10006474; scaffold42246 WUBlastX DNA_hAT 43911 44600 139 + . . scaffold42246 GLEAN mRNA 53625 53669 0.99004 + . ID=CGI_10006475; scaffold42246 TRF Tandem_Repeat 53625 53669 90 + . . scaffold42246 GLEAN mRNA 55460 55515 0.99004 + . ID=CGI_10006475; scaffold42246 TRF Tandem_Repeat 55460 55515 62 + . . scaffold42246 GLEAN mRNA 57309 57345 0.99004 + . ID=CGI_10006475; scaffold42246 TRF Tandem_Repeat 57309 57345 58 + . . scaffold42246 GLEAN mRNA 62939 62981 0.722497 - . ID=CGI_10006476; scaffold42246 TRF Tandem_Repeat 62939 62981 77 + . . scaffold42246 GLEAN mRNA 75688 75739 0.722497 - . ID=CGI_10006476; scaffold42246 TRF Tandem_Repeat 75688 75739 104 + . . scaffold42246 GLEAN mRNA 80065 80117 0.722497 - . ID=CGI_10006476; scaffold42246 TRF Tandem_Repeat 80065 80117 106 + . . scaffold42246 GLEAN mRNA 83912 83960 0.722497 - . ID=CGI_10006476; scaffold42246 TRF Tandem_Repeat 83912 83960 98 + . . scaffold42246 GLEAN mRNA 87393 87423 0.722497 - . ID=CGI_10006476; scaffold42246 TRF Tandem_Repeat 87393 87423 62 + . . scaffold42246 GLEAN mRNA 118060 118091 0.810146 - . ID=CGI_10006478; scaffold42246 TRF Tandem_Repeat 118060 118091 55 + . . scaffold42246 GLEAN mRNA 128260 128285 0.810146 - . ID=CGI_10006478; scaffold42246 TRF Tandem_Repeat 128260 128285 52 + . . scaffold42246 GLEAN mRNA 134037 134088 0.810146 - . ID=CGI_10006478; scaffold42246 TRF Tandem_Repeat 134037 134088 68 + . . scaffold809 GLEAN mRNA 104078 104104 0.991748 + . ID=CGI_10006490; scaffold809 TRF Tandem_Repeat 104078 104104 54 + . . scaffold809 GLEAN mRNA 111672 111765 0.991748 + . ID=CGI_10006490; scaffold809 TRF Tandem_Repeat 111672 111765 118 + . . scaffold809 GLEAN mRNA 111928 112066 0.991748 + . ID=CGI_10006490; scaffold809 TRF Tandem_Repeat 111928 112066 109 + . . scaffold809 GLEAN mRNA 112143 112234 0.991748 + . ID=CGI_10006490; scaffold809 TRF Tandem_Repeat 112143 112234 150 + . . scaffold809 GLEAN mRNA 106439 107998 0.991748 + . ID=CGI_10006490; scaffold809 WUBlastX LTR_Ngaro 106439 107998 1103 + . . scaffold809 GLEAN mRNA 105673 106461 0.991748 + . ID=CGI_10006490; scaffold809 WUBlastX LTR_Ngaro 105673 106461 198 + . . scaffold809 GLEAN mRNA 105379 106455 0.991748 + . ID=CGI_10006490; scaffold809 WUBlastX LTR_Ngaro 105379 106455 183 + . . scaffold809 GLEAN mRNA 107974 108255 0.991748 + . ID=CGI_10006490; scaffold809 WUBlastX LTR_Ngaro 107974 108255 85 + . . scaffold809 GLEAN mRNA 102954 103313 0.991748 + . ID=CGI_10006490; scaffold809 WUBlastX LINE_RTE-X 102954 103313 60 + . . scaffold809 GLEAN mRNA 128277 128359 0.553857 + . ID=CGI_10006493; scaffold809 TRF Tandem_Repeat 128277 128359 166 + . . scaffold809 GLEAN mRNA 121558 121674 0.553857 + . ID=CGI_10006493; scaffold809 WUBlastX LTR_Gypsy 121558 121674 66 + . . scaffold809 GLEAN mRNA 139266 139330 0.997448 + . ID=CGI_10006495; scaffold809 TRF Tandem_Repeat 139266 139330 85 + . . scaffold809 GLEAN mRNA 140752 140789 0.997448 + . ID=CGI_10006495; scaffold809 TRF Tandem_Repeat 140752 140789 76 + . . scaffold809 GLEAN mRNA 141064 141114 0.997448 + . ID=CGI_10006495; scaffold809 TRF Tandem_Repeat 141064 141114 57 + . . scaffold809 GLEAN mRNA 143941 143969 0.997448 + . ID=CGI_10006495; scaffold809 TRF Tandem_Repeat 143941 143969 51 + . . scaffold1121 GLEAN mRNA 35365 35413 0.999674 - . ID=CGI_10006498; scaffold1121 TRF Tandem_Repeat 35365 35413 98 + . . scaffold1121 GLEAN mRNA 47616 47645 0.999674 - . ID=CGI_10006498; scaffold1121 TRF Tandem_Repeat 47616 47645 60 + . . scaffold1121 GLEAN mRNA 51497 51567 0.999674 - . ID=CGI_10006498; scaffold1121 TRF Tandem_Repeat 51497 51567 142 + . . scaffold1121 GLEAN mRNA 55099 55125 0.999674 - . ID=CGI_10006498; scaffold1121 TRF Tandem_Repeat 55099 55125 54 + . . scaffold1121 GLEAN mRNA 88738 89065 0.915985 + . ID=CGI_10006501; scaffold1121 TRF Tandem_Repeat 88738 89065 500 + . . scaffold1121 GLEAN mRNA 97692 97737 0.996894 - . ID=CGI_10006502; scaffold1121 TRF Tandem_Repeat 97692 97737 92 + . . scaffold1121 GLEAN mRNA 110547 110636 0.863777 + . ID=CGI_10006504; scaffold1121 TRF Tandem_Repeat 110547 110636 153 + . . scaffold1121 GLEAN mRNA 110547 110636 0.863777 + . ID=CGI_10006504; scaffold1121 TRF Tandem_Repeat 110547 110636 153 + . . scaffold1121 GLEAN mRNA 132669 132817 0.9996 + . ID=CGI_10006506; scaffold1121 TRF Tandem_Repeat 132669 132817 201 + . . scaffold1121 GLEAN mRNA 144251 144638 0.722367 - . ID=CGI_10006507; scaffold1121 TRF Tandem_Repeat 144251 144638 425 + . . scaffold1121 GLEAN mRNA 140644 140964 0.722367 - . ID=CGI_10006507; scaffold1121 WUBlastX DNA_hAT-Tip100 140644 140964 46 - . . scaffold1121 GLEAN mRNA 140767 140970 0.722367 - . ID=CGI_10006507; scaffold1121 WUBlastX DNA_hAT-Tip100 140767 140970 98 - . . scaffold1121 GLEAN mRNA 140752 140997 0.722367 - . ID=CGI_10006507; scaffold1121 WUBlastX DNA_hAT-Tip100 140752 140997 94 - . . scaffold42274 GLEAN mRNA 10945 11100 0.722974 - . ID=CGI_10006509; scaffold42274 WUBlastX DNA_hAT 10945 11100 131 - . . scaffold42274 GLEAN mRNA 10319 10537 0.722974 - . ID=CGI_10006509; scaffold42274 WUBlastX DNA_hAT 10319 10537 121 - . . scaffold42274 GLEAN mRNA 12507 12635 0.722974 - . ID=CGI_10006509; scaffold42274 WUBlastX DNA_hAT 12507 12635 86 - . . scaffold42274 GLEAN mRNA 12912 13658 0.722974 - . ID=CGI_10006509; scaffold42274 WUBlastX DNA_hAT 12912 13658 518 - . . scaffold42274 GLEAN mRNA 11875 11988 0.722974 - . ID=CGI_10006509; scaffold42274 WUBlastX DNA_hAT 11875 11988 79 - . . scaffold42274 GLEAN mRNA 11459 11650 0.722974 - . ID=CGI_10006509; scaffold42274 WUBlastX DNA_hAT 11459 11650 82 - . . scaffold42274 GLEAN mRNA 11905 12012 0.722974 - . ID=CGI_10006509; scaffold42274 WUBlastX DNA_hAT 11905 12012 71 - . . scaffold42274 GLEAN mRNA 58010 58055 0.998895 + . ID=CGI_10006512; scaffold42274 TRF Tandem_Repeat 58010 58055 65 + . . scaffold42274 GLEAN mRNA 62498 62626 0.998895 + . ID=CGI_10006512; scaffold42274 WUBlastX LINE_RTE-BovB 62498 62626 38 - . . scaffold42264 GLEAN mRNA 6609 6663 0.999998 - . ID=CGI_10006516; scaffold42264 TRF Tandem_Repeat 6609 6663 110 + . . scaffold42264 GLEAN mRNA 8485 8691 0.999998 - . ID=CGI_10006516; scaffold42264 TRF Tandem_Repeat 8485 8691 414 + . . scaffold42264 GLEAN mRNA 9944 9969 0.999998 - . ID=CGI_10006516; scaffold42264 TRF Tandem_Repeat 9944 9969 52 + . . scaffold42264 GLEAN mRNA 10264 10298 0.999998 - . ID=CGI_10006516; scaffold42264 TRF Tandem_Repeat 10264 10298 70 + . . scaffold42264 GLEAN mRNA 77375 77872 0.999917 + . ID=CGI_10006519; scaffold42264 WUBlastX LINE_L2 77375 77872 76 + . . scaffold42264 GLEAN mRNA 77495 77944 0.999917 + . ID=CGI_10006519; scaffold42264 WUBlastX LINE_L2 77495 77944 47 + . . scaffold1064 GLEAN mRNA 21181 21221 0.999949 - . ID=CGI_10006532; scaffold1064 TRF Tandem_Repeat 21181 21221 50 + . . scaffold1064 GLEAN mRNA 23245 23450 0.999949 - . ID=CGI_10006532; scaffold1064 TRF Tandem_Repeat 23245 23450 304 + . . scaffold1064 GLEAN mRNA 47561 47619 1 + . ID=CGI_10006535; scaffold1064 TRF Tandem_Repeat 47561 47619 118 + . . scaffold1064 GLEAN mRNA 48262 48295 1 + . ID=CGI_10006535; scaffold1064 TRF Tandem_Repeat 48262 48295 54 + . . scaffold1064 GLEAN mRNA 55420 55660 0.999014 - . ID=CGI_10006536; scaffold1064 TRF Tandem_Repeat 55420 55660 313 + . . scaffold1064 GLEAN mRNA 56528 56768 0.999014 - . ID=CGI_10006536; scaffold1064 TRF Tandem_Repeat 56528 56768 311 + . . scaffold1064 GLEAN mRNA 69641 70024 0.999372 + . ID=CGI_10006537; scaffold1064 WUBlastX LTR_Gypsy 69545 70189 25 + . . scaffold1064 GLEAN mRNA 92327 92366 0.84036 - . ID=CGI_10006539; scaffold1064 TRF Tandem_Repeat 92327 92366 71 + . . scaffold42372 GLEAN mRNA 145779 145828 0.728721 + . ID=CGI_10006546; scaffold42372 TRF Tandem_Repeat 145779 145828 100 + . . scaffold42328 GLEAN mRNA 4007 5455 0.843872 - . ID=CGI_10006547; scaffold42328 TRF Tandem_Repeat 4007 5455 2109 + . . scaffold42328 GLEAN mRNA 30699 30887 0.777732 + . ID=CGI_10006549; scaffold42328 WUBlastX LINE_RTE-X 30699 30887 82 - . . scaffold42328 GLEAN mRNA 30738 30893 0.777732 + . ID=CGI_10006549; scaffold42328 WUBlastX LINE_RTE-X 30738 30893 98 - . . scaffold42328 GLEAN mRNA 30735 30935 0.777732 + . ID=CGI_10006549; scaffold42328 WUBlastX LINE_RTE-X 30735 30935 43 - . . scaffold42328 GLEAN mRNA 47530 47581 0.378009 - . ID=CGI_10006551; scaffold42328 TRF Tandem_Repeat 47530 47581 52 + . . scaffold42328 GLEAN mRNA 47818 47890 0.378009 - . ID=CGI_10006551; scaffold42328 TRF Tandem_Repeat 47818 47890 146 + . . scaffold42328 GLEAN mRNA 60134 60213 0.999221 + . ID=CGI_10006553; scaffold42328 TRF Tandem_Repeat 60134 60213 151 + . . scaffold42328 GLEAN mRNA 61534 61576 0.999221 + . ID=CGI_10006553; scaffold42328 TRF Tandem_Repeat 61534 61576 59 + . . scaffold42328 GLEAN mRNA 61534 61576 0.999221 + . ID=CGI_10006553; scaffold42328 TRF Tandem_Repeat 61534 61576 50 + . . scaffold42328 GLEAN mRNA 78855 79613 0.999612 + . ID=CGI_10006554; scaffold42328 WUBlastX LINE_RTE-X 78855 79613 141 - . . scaffold42328 GLEAN mRNA 90697 91155 0.997014 + . ID=CGI_10006555; scaffold42328 TRF Tandem_Repeat 90697 91155 756 + . . scaffold42328 GLEAN mRNA 92644 93694 0.997014 + . ID=CGI_10006555; scaffold42328 TRF Tandem_Repeat 92644 93694 879 + . . scaffold42328 GLEAN mRNA 92644 93521 0.997014 + . ID=CGI_10006555; scaffold42328 TRF Tandem_Repeat 92644 93521 1035 + . . scaffold42328 GLEAN mRNA 92644 93691 0.997014 + . ID=CGI_10006555; scaffold42328 TRF Tandem_Repeat 92644 93691 1271 + . . scaffold42328 GLEAN mRNA 93647 93706 0.997014 + . ID=CGI_10006555; scaffold42328 TRF Tandem_Repeat 93647 93706 61 + . . scaffold42328 GLEAN mRNA 100382 100543 0.997014 + . ID=CGI_10006555; scaffold42328 TRF Tandem_Repeat 100382 100543 261 + . . scaffold42328 GLEAN mRNA 114055 114254 0.988829 - . ID=CGI_10006556; scaffold42328 TRF Tandem_Repeat 114055 114254 343 + . . scaffold42328 GLEAN mRNA 117143 118393 0.988829 - . ID=CGI_10006556; scaffold42328 TRF Tandem_Repeat 117143 118393 999 + . . scaffold42328 GLEAN mRNA 117160 117681 0.988829 - . ID=CGI_10006556; scaffold42328 TRF Tandem_Repeat 117160 117681 486 + . . scaffold42328 GLEAN mRNA 117143 118393 0.988829 - . ID=CGI_10006556; scaffold42328 TRF Tandem_Repeat 117143 118393 871 + . . scaffold42328 GLEAN mRNA 117643 118388 0.988829 - . ID=CGI_10006556; scaffold42328 TRF Tandem_Repeat 117643 118388 835 + . . scaffold42328 GLEAN mRNA 120472 121005 0.988829 - . ID=CGI_10006556; scaffold42328 TRF Tandem_Repeat 120472 121005 753 + . . scaffold42328 GLEAN mRNA 122821 122870 0.988829 - . ID=CGI_10006556; scaffold42328 TRF Tandem_Repeat 122821 122870 100 + . . scaffold42328 GLEAN mRNA 129057 129145 0.988829 - . ID=CGI_10006556; scaffold42328 TRF Tandem_Repeat 129057 129145 79 + . . scaffold42328 GLEAN mRNA 138468 138634 0.999195 + . ID=CGI_10006557; scaffold42328 TRF Tandem_Repeat 138468 138634 228 + . . scaffold42268 GLEAN mRNA 1927 2006 0.998831 - . ID=CGI_10006558; scaffold42268 TRF Tandem_Repeat 1927 2006 112 + . . scaffold42268 GLEAN mRNA 1934 2002 0.998831 - . ID=CGI_10006558; scaffold42268 TRF Tandem_Repeat 1934 2002 74 + . . scaffold42268 GLEAN mRNA 1930 2007 0.998831 - . ID=CGI_10006558; scaffold42268 TRF Tandem_Repeat 1930 2007 76 + . . scaffold42268 GLEAN mRNA 127878 128183 0.955691 + . ID=CGI_10006563; scaffold42268 WUBlastX DNA_TcMar-Tc1 127878 128183 42 + . . scaffold42302 GLEAN mRNA 18884 18918 1 - . ID=CGI_10006565; scaffold42302 TRF Tandem_Repeat 18884 18918 52 + . . scaffold42302 GLEAN mRNA 39094 39138 0.985331 - . ID=CGI_10006567; scaffold42302 TRF Tandem_Repeat 39094 39138 72 + . . scaffold42302 GLEAN mRNA 42078 42248 0.986322 - . ID=CGI_10006568; scaffold42302 WUBlastX DNA_PiggyBac 42078 42248 36 - . . scaffold42302 GLEAN mRNA 74754 74789 0.59335 + . ID=CGI_10006570; scaffold42302 TRF Tandem_Repeat 74754 74789 72 + . . scaffold42302 GLEAN mRNA 147949 148295 0.999952 - . ID=CGI_10006575; scaffold42302 TRF Tandem_Repeat 147949 148295 369 + . . scaffold141 GLEAN mRNA 15284 15318 0.833265 - . ID=CGI_10006577; scaffold141 TRF Tandem_Repeat 15284 15318 70 + . . scaffold141 GLEAN mRNA 15284 15318 0.989677 + . ID=CGI_10006578; scaffold141 TRF Tandem_Repeat 15284 15318 70 + . . scaffold141 GLEAN mRNA 37060 37352 0.989288 + . ID=CGI_10006580; scaffold141 TRF Tandem_Repeat 37060 37352 453 + . . scaffold141 GLEAN mRNA 40147 40842 0.989288 + . ID=CGI_10006580; scaffold141 WUBlastX LINE_L1 40147 40842 197 - . . scaffold141 GLEAN mRNA 40123 40971 0.989288 + . ID=CGI_10006580; scaffold141 WUBlastX LINE_L1 40123 40971 25 - . . scaffold1592 GLEAN mRNA 17522 18012 0.660889 + . ID=CGI_10006584; scaffold1592 TRF Tandem_Repeat 17522 18012 684 + . . scaffold1592 GLEAN mRNA 21434 21493 0.660889 + . ID=CGI_10006584; scaffold1592 TRF Tandem_Repeat 21434 21493 111 + . . scaffold1592 GLEAN mRNA 22886 23188 0.660889 + . ID=CGI_10006584; scaffold1592 TRF Tandem_Repeat 22886 23188 245 + . . scaffold1592 GLEAN mRNA 23434 23581 0.660889 + . ID=CGI_10006584; scaffold1592 TRF Tandem_Repeat 23434 23581 172 + . . scaffold1592 GLEAN mRNA 40219 40260 0.999997 + . ID=CGI_10006586; scaffold1592 TRF Tandem_Repeat 40219 40260 84 + . . scaffold1592 GLEAN mRNA 40519 40806 0.999997 + . ID=CGI_10006586; scaffold1592 TRF Tandem_Repeat 40519 40806 319 + . . scaffold1592 GLEAN mRNA 46559 46595 0.999997 + . ID=CGI_10006586; scaffold1592 TRF Tandem_Repeat 46559 46595 74 + . . scaffold1592 GLEAN mRNA 51168 51323 0.774411 - . ID=CGI_10006587; scaffold1592 TRF Tandem_Repeat 51168 51323 258 + . . scaffold1592 GLEAN mRNA 61057 61109 0.774411 - . ID=CGI_10006587; scaffold1592 TRF Tandem_Repeat 61057 61109 74 + . . scaffold1592 GLEAN mRNA 65266 65324 0.774411 - . ID=CGI_10006587; scaffold1592 TRF Tandem_Repeat 65266 65324 118 + . . scaffold1592 GLEAN mRNA 67711 67811 0.774411 - . ID=CGI_10006587; scaffold1592 TRF Tandem_Repeat 67711 67811 130 + . . scaffold1592 GLEAN mRNA 69611 69647 0.774411 - . ID=CGI_10006587; scaffold1592 TRF Tandem_Repeat 69611 69647 65 + . . scaffold1592 GLEAN mRNA 69721 69761 0.774411 - . ID=CGI_10006587; scaffold1592 TRF Tandem_Repeat 69721 69761 64 + . . scaffold1592 GLEAN mRNA 75173 75236 0.774411 - . ID=CGI_10006587; scaffold1592 TRF Tandem_Repeat 75173 75236 128 + . . scaffold1592 GLEAN mRNA 76138 76170 0.774411 - . ID=CGI_10006587; scaffold1592 TRF Tandem_Repeat 76138 76170 66 + . . scaffold1592 GLEAN mRNA 77430 77458 0.774411 - . ID=CGI_10006587; scaffold1592 TRF Tandem_Repeat 77430 77458 58 + . . scaffold1592 GLEAN mRNA 77456 77505 0.774411 - . ID=CGI_10006587; scaffold1592 TRF Tandem_Repeat 77456 77505 100 + . . scaffold1592 GLEAN mRNA 113471 113682 0.999999 + . ID=CGI_10006588; scaffold1592 TRF Tandem_Repeat 113471 113682 222 + . . scaffold1592 GLEAN mRNA 146612 148173 1 - . ID=CGI_10006592; scaffold1592 TRF Tandem_Repeat 146612 148173 2040 + . . scaffold1592 GLEAN mRNA 147027 148173 1 - . ID=CGI_10006592; scaffold1592 TRF Tandem_Repeat 147027 148173 1814 + . . scaffold715 GLEAN mRNA 8054 8528 0.49851 + . ID=CGI_10006595; scaffold715 TRF Tandem_Repeat 8054 8528 812 + . . scaffold715 GLEAN mRNA 11685 12605 0.49851 + . ID=CGI_10006595; scaffold715 TRF Tandem_Repeat 11685 12605 713 + . . scaffold715 GLEAN mRNA 78767 80389 0.503753 - . ID=CGI_10006598; scaffold715 TRF Tandem_Repeat 78767 80389 1436 + . . scaffold715 GLEAN mRNA 136337 136372 0.672245 + . ID=CGI_10006600; scaffold715 TRF Tandem_Repeat 136337 136372 72 + . . scaffold715 GLEAN mRNA 137576 138537 0.672245 + . ID=CGI_10006600; scaffold715 TRF Tandem_Repeat 137576 138537 1408 + . . scaffold715 GLEAN mRNA 141301 142250 0.672245 + . ID=CGI_10006600; scaffold715 TRF Tandem_Repeat 141301 142250 1119 + . . scaffold273 GLEAN mRNA 108657 108692 0.694752 - . ID=CGI_10006605; scaffold273 TRF Tandem_Repeat 108657 108692 63 + . . scaffold273 GLEAN mRNA 108740 108831 0.694752 - . ID=CGI_10006605; scaffold273 TRF Tandem_Repeat 108740 108831 150 + . . scaffold273 GLEAN mRNA 113784 113946 0.694752 - . ID=CGI_10006605; scaffold273 TRF Tandem_Repeat 113784 113946 210 + . . scaffold273 GLEAN mRNA 145415 145649 0.777738 - . ID=CGI_10006606; scaffold273 TRF Tandem_Repeat 145415 145649 195 + . . scaffold273 GLEAN mRNA 146163 146547 0.777738 - . ID=CGI_10006606; scaffold273 TRF Tandem_Repeat 146163 146547 646 + . . scaffold273 GLEAN mRNA 148698 148787 0.777738 - . ID=CGI_10006606; scaffold273 TRF Tandem_Repeat 148698 148787 137 + . . scaffold42306 GLEAN mRNA 59202 59619 0.997439 + . ID=CGI_10006607; scaffold42306 TRF Tandem_Repeat 59202 59619 487 + . . scaffold42306 GLEAN mRNA 71329 71793 0.997439 + . ID=CGI_10006607; scaffold42306 TRF Tandem_Repeat 71329 71793 750 + . . scaffold42306 GLEAN mRNA 92243 92350 0.999676 - . ID=CGI_10006610; scaffold42306 TRF Tandem_Repeat 92243 92350 94 + . . scaffold42306 GLEAN mRNA 92239 92350 0.999676 - . ID=CGI_10006610; scaffold42306 TRF Tandem_Repeat 92239 92350 116 + . . scaffold42306 GLEAN mRNA 93827 94085 0.999676 - . ID=CGI_10006610; scaffold42306 TRF Tandem_Repeat 93827 94085 421 + . . scaffold42306 GLEAN mRNA 101357 101432 0.999676 - . ID=CGI_10006610; scaffold42306 TRF Tandem_Repeat 101357 101432 116 + . . scaffold42306 GLEAN mRNA 101782 102182 0.999676 - . ID=CGI_10006610; scaffold42306 TRF Tandem_Repeat 101782 102182 721 + . . scaffold42306 GLEAN mRNA 124428 124484 0.855145 + . ID=CGI_10006611; scaffold42306 TRF Tandem_Repeat 124428 124484 114 + . . scaffold42306 GLEAN mRNA 123483 123761 0.855145 + . ID=CGI_10006611; scaffold42306 WUBlastX LTR_DIRS 123483 123761 52 - . . scaffold42306 GLEAN mRNA 123483 123716 0.855145 + . ID=CGI_10006611; scaffold42306 WUBlastX LTR_DIRS 123483 123716 69 - . . scaffold42306 GLEAN mRNA 137611 137641 0.855145 + . ID=CGI_10006611; scaffold42306 TRF Tandem_Repeat 137611 137641 62 + . . scaffold42306 GLEAN mRNA 146298 146338 0.855145 + . ID=CGI_10006611; scaffold42306 TRF Tandem_Repeat 146298 146338 55 + . . scaffold1844 GLEAN mRNA 3587 3810 1 + . ID=CGI_10006612; scaffold1844 TRF Tandem_Repeat 3587 3810 412 + . . scaffold1844 GLEAN mRNA 101313 101433 0.999947 + . ID=CGI_10006617; scaffold1844 TRF Tandem_Repeat 101313 101433 118 + . . scaffold1844 GLEAN mRNA 101671 101705 0.999947 + . ID=CGI_10006617; scaffold1844 TRF Tandem_Repeat 101671 101705 70 + . . scaffold1844 GLEAN mRNA 101792 101819 0.999947 + . ID=CGI_10006617; scaffold1844 TRF Tandem_Repeat 101792 101819 56 + . . scaffold1844 GLEAN mRNA 102672 102703 0.999947 + . ID=CGI_10006617; scaffold1844 TRF Tandem_Repeat 102672 102703 55 + . . scaffold1844 GLEAN mRNA 102919 103024 0.999947 + . ID=CGI_10006617; scaffold1844 TRF Tandem_Repeat 102919 103024 99 + . . scaffold1844 GLEAN mRNA 125717 125818 0.924542 + . ID=CGI_10006619; scaffold1844 WUBlastX LINE_RTE-BovB 125717 125818 29 + . . scaffold1844 GLEAN mRNA 125702 125800 0.924542 + . ID=CGI_10006619; scaffold1844 WUBlastX LINE_RTE-X 125702 125800 56 + . . scaffold1844 GLEAN mRNA 125437 125562 0.924542 + . ID=CGI_10006619; scaffold1844 WUBlastX LINE_L1 125437 125562 27 + . . scaffold1844 GLEAN mRNA 125630 125794 0.924542 + . ID=CGI_10006619; scaffold1844 WUBlastX LINE_RTE-X 125630 125794 30 + . . scaffold1844 GLEAN mRNA 125499 125591 0.924542 + . ID=CGI_10006619; scaffold1844 WUBlastX LINE_RTE-X 125499 125591 25 + . . scaffold1844 GLEAN mRNA 125818 126459 0.924542 + . ID=CGI_10006619; scaffold1844 WUBlastX LINE_RTE-X 125818 126459 350 + . . scaffold1844 GLEAN mRNA 126422 126712 0.924542 + . ID=CGI_10006619; scaffold1844 WUBlastX LINE_RTE-X 126422 126712 114 + . . scaffold1844 GLEAN mRNA 126669 127493 0.924542 + . ID=CGI_10006619; scaffold1844 WUBlastX LINE_RTE-X 126669 127493 161 + . . scaffold1844 GLEAN mRNA 150973 151159 0.232183 + . ID=CGI_10006620; scaffold1844 TRF Tandem_Repeat 150973 151159 311 + . . scaffold1875 GLEAN mRNA 28236 28353 0.35214 + . ID=CGI_10006624; scaffold1875 TRF Tandem_Repeat 28236 28353 227 + . . scaffold1875 GLEAN mRNA 22328 22483 0.35214 + . ID=CGI_10006624; scaffold1875 WUBlastX DNA_Zator 22328 22483 61 - . . scaffold1875 GLEAN mRNA 22658 22921 0.35214 + . ID=CGI_10006624; scaffold1875 WUBlastX DNA_Zator 22658 22921 67 - . . scaffold1875 GLEAN mRNA 23429 23635 0.35214 + . ID=CGI_10006624; scaffold1875 WUBlastX DNA_Zator 23429 23635 57 - . . scaffold1875 GLEAN mRNA 23709 25169 0.35214 + . ID=CGI_10006624; scaffold1875 WUBlastX DNA_Zator 23709 25169 676 - . . scaffold1875 GLEAN mRNA 22328 22483 1 - . ID=CGI_10006625; scaffold1875 WUBlastX DNA_Zator 22328 22483 61 - . . scaffold1875 GLEAN mRNA 22658 22768 1 - . ID=CGI_10006625; scaffold1875 WUBlastX DNA_Zator 22658 22921 67 - . . scaffold1875 GLEAN mRNA 23429 23635 1 - . ID=CGI_10006626; scaffold1875 WUBlastX DNA_Zator 23429 23635 57 - . . scaffold1875 GLEAN mRNA 23709 24929 1 - . ID=CGI_10006626; scaffold1875 WUBlastX DNA_Zator 23709 25169 676 - . . scaffold1875 GLEAN mRNA 46310 46343 0.999999 + . ID=CGI_10006627; scaffold1875 TRF Tandem_Repeat 46310 46343 68 + . . scaffold1875 GLEAN mRNA 47315 47383 0.999999 + . ID=CGI_10006627; scaffold1875 TRF Tandem_Repeat 47315 47383 131 + . . scaffold1875 GLEAN mRNA 59280 59312 0.997947 + . ID=CGI_10006628; scaffold1875 TRF Tandem_Repeat 59280 59312 66 + . . scaffold1875 GLEAN mRNA 64869 64960 0.997947 + . ID=CGI_10006628; scaffold1875 TRF Tandem_Repeat 64869 64960 147 + . . scaffold1875 GLEAN mRNA 64869 64960 0.997947 + . ID=CGI_10006628; scaffold1875 TRF Tandem_Repeat 64869 64960 159 + . . scaffold1875 GLEAN mRNA 112792 112838 0.998262 + . ID=CGI_10006630; scaffold1875 TRF Tandem_Repeat 112792 112838 94 + . . scaffold1875 GLEAN mRNA 112836 112870 0.998262 + . ID=CGI_10006630; scaffold1875 TRF Tandem_Repeat 112836 112870 70 + . . scaffold1875 GLEAN mRNA 121849 121890 0.998262 + . ID=CGI_10006630; scaffold1875 TRF Tandem_Repeat 121849 121890 84 + . . scaffold1875 GLEAN mRNA 143017 143051 0.998262 + . ID=CGI_10006630; scaffold1875 TRF Tandem_Repeat 143017 143051 63 + . . scaffold1875 GLEAN mRNA 144025 144172 0.998262 + . ID=CGI_10006630; scaffold1875 WUBlastX LINE_CR1-L2 144025 144279 57 + . . scaffold215 GLEAN mRNA 79347 79434 0.542835 - . ID=CGI_10006639; scaffold215 TRF Tandem_Repeat 79347 79434 126 + . . scaffold215 GLEAN mRNA 91685 91756 0.999988 - . ID=CGI_10006640; scaffold215 TRF Tandem_Repeat 91685 91756 117 + . . scaffold215 GLEAN mRNA 109969 110006 0.272728 + . ID=CGI_10006643; scaffold215 TRF Tandem_Repeat 109969 110006 76 + . . scaffold215 GLEAN mRNA 109434 109844 0.272728 + . ID=CGI_10006643; scaffold215 WUBlastX DNA_Maverick 109434 109844 59 + . . scaffold215 GLEAN mRNA 144165 144222 0.702348 + . ID=CGI_10006646; scaffold215 TRF Tandem_Repeat 144165 144222 116 + . . scaffold215 GLEAN mRNA 145504 145572 0.702348 + . ID=CGI_10006646; scaffold215 TRF Tandem_Repeat 145504 145572 138 + . . scaffold215 GLEAN mRNA 145626 145661 0.702348 + . ID=CGI_10006646; scaffold215 TRF Tandem_Repeat 145626 145661 63 + . . scaffold215 GLEAN mRNA 146651 146794 0.702348 + . ID=CGI_10006646; scaffold215 WUBlastX LINE_RTE-X 146651 146794 30 - . . scaffold215 GLEAN mRNA 151193 151251 0.354656 - . ID=CGI_10006647; scaffold215 TRF Tandem_Repeat 151193 151251 64 + . . scaffold215 GLEAN mRNA 152592 152630 0.354656 - . ID=CGI_10006647; scaffold215 TRF Tandem_Repeat 152592 152630 78 + . . scaffold215 GLEAN mRNA 153400 153496 0.354656 - . ID=CGI_10006647; scaffold215 TRF Tandem_Repeat 153400 153496 171 + . . scaffold215 GLEAN mRNA 156686 156731 0.354656 - . ID=CGI_10006647; scaffold215 TRF Tandem_Repeat 156686 156731 58 + . . scaffold215 GLEAN mRNA 156729 156778 0.354656 - . ID=CGI_10006647; scaffold215 TRF Tandem_Repeat 156729 156778 100 + . . scaffold215 GLEAN mRNA 156390 156479 0.354656 - . ID=CGI_10006647; scaffold215 WUBlastX LINE_RTE-BovB 156390 156479 87 - . . scaffold215 GLEAN mRNA 155968 156450 0.354656 - . ID=CGI_10006647; scaffold215 WUBlastX LINE_RTE-BovB 155968 156450 178 - . . scaffold215 GLEAN mRNA 155436 155600 0.354656 - . ID=CGI_10006647; scaffold215 WUBlastX LINE_RTE-BovB 155436 155600 29 - . . scaffold215 GLEAN mRNA 155549 155965 0.354656 - . ID=CGI_10006647; scaffold215 WUBlastX LINE_RTE-BovB 155549 155965 206 - . . scaffold215 GLEAN mRNA 156121 156411 0.354656 - . ID=CGI_10006647; scaffold215 WUBlastX LINE_RTE-BovB 156121 156411 234 - . . scaffold215 GLEAN mRNA 156479 156604 0.354656 - . ID=CGI_10006647; scaffold215 WUBlastX LINE_RTE-BovB 156479 156604 128 - . . scaffold491 GLEAN mRNA 20712 21191 0.994918 - . ID=CGI_10006648; scaffold491 WUBlastX LTR_Ngaro 20712 21191 166 - . . scaffold491 GLEAN mRNA 39541 39589 0.304389 + . ID=CGI_10006649; scaffold491 TRF Tandem_Repeat 39541 39589 62 + . . scaffold491 GLEAN mRNA 45833 46468 0.304389 + . ID=CGI_10006649; scaffold491 WUBlastX LTR_Pao 45833 46468 22 + . . scaffold491 GLEAN mRNA 71737 72488 0.999025 - . ID=CGI_10006653; scaffold491 TRF Tandem_Repeat 71737 72488 1024 + . . scaffold491 GLEAN mRNA 73397 73442 0.999025 - . ID=CGI_10006653; scaffold491 TRF Tandem_Repeat 73397 73442 92 + . . scaffold491 GLEAN mRNA 75744 75773 0.999025 - . ID=CGI_10006653; scaffold491 TRF Tandem_Repeat 75744 75773 51 + . . scaffold491 GLEAN mRNA 77832 78224 0.999025 - . ID=CGI_10006653; scaffold491 TRF Tandem_Repeat 77832 78224 579 + . . scaffold491 GLEAN mRNA 94557 94595 0.839439 + . ID=CGI_10006654; scaffold491 TRF Tandem_Repeat 94557 94595 78 + . . scaffold491 GLEAN mRNA 97194 98088 0.839439 + . ID=CGI_10006654; scaffold491 TRF Tandem_Repeat 97194 98088 1188 + . . scaffold427 GLEAN mRNA 22108 22152 1 + . ID=CGI_10006658; scaffold427 TRF Tandem_Repeat 22108 22152 90 + . . scaffold427 GLEAN mRNA 60926 61007 0.934376 - . ID=CGI_10006659; scaffold427 TRF Tandem_Repeat 60926 61007 55 + . . scaffold427 GLEAN mRNA 60967 60999 0.934376 - . ID=CGI_10006659; scaffold427 TRF Tandem_Repeat 60967 60999 52 + . . scaffold427 GLEAN mRNA 62884 63742 0.934376 - . ID=CGI_10006659; scaffold427 TRF Tandem_Repeat 62884 63742 1202 + . . scaffold427 GLEAN mRNA 62884 63742 0.934376 - . ID=CGI_10006659; scaffold427 TRF Tandem_Repeat 62884 63742 1211 + . . scaffold427 GLEAN mRNA 76749 79736 0.777732 - . ID=CGI_10006661; scaffold427 WUBlastX LTR_Gypsy 76749 79736 2135 + . . scaffold427 GLEAN mRNA 78177 80045 0.777732 - . ID=CGI_10006661; scaffold427 WUBlastX LTR_Gypsy 78177 80045 1070 + . . scaffold536 GLEAN mRNA 68697 68736 0.999348 + . ID=CGI_10006670; scaffold536 TRF Tandem_Repeat 68697 68736 80 + . . scaffold536 GLEAN mRNA 86189 86617 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_RTE-X 86189 86617 50 - . . scaffold536 GLEAN mRNA 89611 89673 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_CR1-L2 89611 89673 20 + . . scaffold536 GLEAN mRNA 88249 88494 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_RTE-X 88249 88494 48 + . . scaffold536 GLEAN mRNA 86304 86513 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_RTE-X 86304 86513 97 - . . scaffold536 GLEAN mRNA 85517 85687 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_RTE-X 85517 85687 23 - . . scaffold536 GLEAN mRNA 85795 86067 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_RTE-X 85795 86067 21 - . . scaffold536 GLEAN mRNA 86298 86546 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_RTE-X 86298 86546 93 - . . scaffold536 GLEAN mRNA 88569 88640 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_RTE-X 88569 88640 33 + . . scaffold536 GLEAN mRNA 85710 85781 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_RTE-X 85710 85781 22 - . . scaffold536 GLEAN mRNA 88636 88749 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_CR1-L2 88636 88749 47 + . . scaffold536 GLEAN mRNA 88327 88494 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_RTE-X 88327 88494 56 + . . scaffold536 GLEAN mRNA 85992 86513 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_RTE-X 85992 86513 66 - . . scaffold536 GLEAN mRNA 88669 88875 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_L2 88669 88875 70 + . . scaffold536 GLEAN mRNA 85710 85763 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_RTE-X 85710 85763 31 - . . scaffold536 GLEAN mRNA 88776 89441 0.999348 + . ID=CGI_10006670; scaffold536 WUBlastX LINE_L2 88776 89441 93 + . . scaffold536 GLEAN mRNA 96710 96736 1 + . ID=CGI_10006672; scaffold536 TRF Tandem_Repeat 96710 96736 54 + . . scaffold536 GLEAN mRNA 127320 127383 0.651045 - . ID=CGI_10006674; scaffold536 TRF Tandem_Repeat 127320 127383 128 + . . scaffold536 GLEAN mRNA 128386 128431 0.651045 - . ID=CGI_10006674; scaffold536 TRF Tandem_Repeat 128386 128431 65 + . . scaffold42348 GLEAN mRNA 48922 49119 0.96594 + . ID=CGI_10006678; scaffold42348 WUBlastX LTR_Gypsy 48922 49119 28 - . . scaffold42348 GLEAN mRNA 50442 50498 0.96594 + . ID=CGI_10006678; scaffold42348 TRF Tandem_Repeat 50442 50498 50 + . . scaffold42348 GLEAN mRNA 61908 61948 1 - . ID=CGI_10006680; scaffold42348 TRF Tandem_Repeat 61908 61948 59 + . . scaffold42348 GLEAN mRNA 82277 82350 0.997293 + . ID=CGI_10006682; scaffold42348 TRF Tandem_Repeat 82277 82350 116 + . . scaffold42348 GLEAN mRNA 86619 86652 0.997293 + . ID=CGI_10006682; scaffold42348 TRF Tandem_Repeat 86619 86652 52 + . . scaffold42348 GLEAN mRNA 97789 97855 0.643244 - . ID=CGI_10006683; scaffold42348 TRF Tandem_Repeat 97789 97855 80 + . . scaffold42348 GLEAN mRNA 100244 100292 0.643244 - . ID=CGI_10006683; scaffold42348 TRF Tandem_Repeat 100244 100292 98 + . . scaffold42348 GLEAN mRNA 100480 100512 0.643244 - . ID=CGI_10006683; scaffold42348 TRF Tandem_Repeat 100480 100512 66 + . . scaffold42348 GLEAN mRNA 100510 100543 0.643244 - . ID=CGI_10006683; scaffold42348 TRF Tandem_Repeat 100510 100543 68 + . . scaffold42348 GLEAN mRNA 101038 101104 0.643244 - . ID=CGI_10006683; scaffold42348 TRF Tandem_Repeat 101038 101104 89 + . . scaffold42348 GLEAN mRNA 106886 106928 0.643244 - . ID=CGI_10006683; scaffold42348 TRF Tandem_Repeat 106886 106928 86 + . . scaffold42348 GLEAN mRNA 101640 101801 0.643244 - . ID=CGI_10006683; scaffold42348 WUBlastX LINE_RTE-X 101640 101801 70 - . . scaffold42348 GLEAN mRNA 101933 102739 0.643244 - . ID=CGI_10006683; scaffold42348 WUBlastX LINE_RTE-X 101933 102739 84 - . . scaffold42348 GLEAN mRNA 101837 102529 0.643244 - . ID=CGI_10006683; scaffold42348 WUBlastX LINE_RTE-X 101837 102529 305 - . . scaffold42348 GLEAN mRNA 101741 102616 0.643244 - . ID=CGI_10006683; scaffold42348 WUBlastX LINE_RTE-X 101741 102616 224 - . . scaffold42348 GLEAN mRNA 101194 101268 0.643244 - . ID=CGI_10006683; scaffold42348 WUBlastX LINE_RTE-X 101194 101268 27 - . . scaffold42348 GLEAN mRNA 145193 145292 0.998987 - . ID=CGI_10006686; scaffold42348 TRF Tandem_Repeat 145193 145292 173 + . . scaffold42348 GLEAN mRNA 146895 146933 0.998987 - . ID=CGI_10006686; scaffold42348 TRF Tandem_Repeat 146895 146933 78 + . . scaffold42348 GLEAN mRNA 148266 148294 0.998987 - . ID=CGI_10006686; scaffold42348 TRF Tandem_Repeat 148266 148294 58 + . . scaffold42348 GLEAN mRNA 151280 151309 0.998987 - . ID=CGI_10006686; scaffold42348 TRF Tandem_Repeat 151280 151309 60 + . . scaffold42348 GLEAN mRNA 147382 147495 0.998987 - . ID=CGI_10006686; scaffold42348 TRF Tandem_Repeat 147382 147495 201 + . . scaffold9 GLEAN mRNA 95410 95451 0.999934 + . ID=CGI_10006688; scaffold9 WUBlastX LINE_CR1 94480 95451 237 + . . scaffold9 GLEAN mRNA 113263 113658 0.999027 - . ID=CGI_10006689; scaffold9 TRF Tandem_Repeat 113263 113658 260 + . . scaffold42326 GLEAN mRNA 72088 72285 1 + . ID=CGI_10006692; scaffold42326 WUBlastX LINE_RTE-BovB 72088 72285 106 - . . scaffold42326 GLEAN mRNA 88790 88824 0.544838 - . ID=CGI_10006693; scaffold42326 TRF Tandem_Repeat 88790 88824 70 + . . scaffold42326 GLEAN mRNA 88822 88893 0.544838 - . ID=CGI_10006693; scaffold42326 TRF Tandem_Repeat 88822 88893 144 + . . scaffold42326 GLEAN mRNA 127936 127979 0.498922 - . ID=CGI_10006698; scaffold42326 TRF Tandem_Repeat 127936 127979 88 + . . scaffold42326 GLEAN mRNA 139428 139454 0.498922 - . ID=CGI_10006698; scaffold42326 TRF Tandem_Repeat 139428 139454 54 + . . scaffold42366 GLEAN mRNA 34084 34134 0.245386 + . ID=CGI_10006699; scaffold42366 TRF Tandem_Repeat 34084 34134 93 + . . scaffold42366 GLEAN mRNA 34535 34577 0.245386 + . ID=CGI_10006699; scaffold42366 TRF Tandem_Repeat 34535 34577 86 + . . scaffold42366 GLEAN mRNA 36496 36741 0.245386 + . ID=CGI_10006699; scaffold42366 WUBlastX LINE_L1-Tx1 36496 36741 34 - . . scaffold42366 GLEAN mRNA 36538 36741 0.245386 + . ID=CGI_10006699; scaffold42366 WUBlastX LINE_L1-Tx1 36538 36741 47 - . . scaffold42366 GLEAN mRNA 50024 50094 0.245386 + . ID=CGI_10006699; scaffold42366 TRF Tandem_Repeat 50024 50094 142 + . . scaffold42366 GLEAN mRNA 67468 67755 0.245386 + . ID=CGI_10006699; scaffold42366 TRF Tandem_Repeat 67468 67755 495 + . . scaffold42366 GLEAN mRNA 75976 76083 0.245386 + . ID=CGI_10006699; scaffold42366 WUBlastX DNA_hAT 75976 76083 25 + . . scaffold42366 GLEAN mRNA 72798 73394 0.245386 + . ID=CGI_10006699; scaffold42366 WUBlastX DNA_hAT 72798 73394 394 + . . scaffold42366 GLEAN mRNA 74654 74950 0.245386 + . ID=CGI_10006699; scaffold42366 WUBlastX DNA_hAT 74654 74950 144 + . . scaffold42366 GLEAN mRNA 75580 75822 0.245386 + . ID=CGI_10006699; scaffold42366 WUBlastX DNA_hAT 75580 75822 45 + . . scaffold42366 GLEAN mRNA 71295 71453 0.245386 + . ID=CGI_10006699; scaffold42366 WUBlastX DNA_hAT 71295 71453 88 + . . scaffold42366 GLEAN mRNA 93714 93817 0.807514 + . ID=CGI_10006701; scaffold42366 TRF Tandem_Repeat 93714 93817 163 + . . scaffold42366 GLEAN mRNA 106157 106205 0.999271 + . ID=CGI_10006702; scaffold42366 TRF Tandem_Repeat 106157 106205 98 + . . scaffold42366 GLEAN mRNA 110514 110539 0.999271 + . ID=CGI_10006702; scaffold42366 TRF Tandem_Repeat 110514 110539 52 + . . scaffold42366 GLEAN mRNA 131892 131935 0.998845 + . ID=CGI_10006704; scaffold42366 TRF Tandem_Repeat 131892 131935 88 + . . scaffold42366 GLEAN mRNA 155359 155411 0.998845 + . ID=CGI_10006704; scaffold42366 TRF Tandem_Repeat 155359 155411 88 + . . scaffold42366 GLEAN mRNA 155359 155414 0.998845 + . ID=CGI_10006704; scaffold42366 TRF Tandem_Repeat 155359 155414 58 + . . scaffold42366 GLEAN mRNA 155365 155414 0.998845 + . ID=CGI_10006704; scaffold42366 TRF Tandem_Repeat 155365 155414 73 + . . scaffold42364 GLEAN mRNA 22971 23945 0.523615 - . ID=CGI_10006717; scaffold42364 WUBlastX DNA_TcMar-Tc1 22971 23945 432 - . . scaffold42364 GLEAN mRNA 48243 48988 0.650511 - . ID=CGI_10006721; scaffold42364 TRF Tandem_Repeat 48243 48988 488 + . . scaffold42364 GLEAN mRNA 55022 55176 0.650511 - . ID=CGI_10006721; scaffold42364 TRF Tandem_Repeat 55022 55176 118 + . . scaffold42364 GLEAN mRNA 64773 64814 0.650511 - . ID=CGI_10006721; scaffold42364 TRF Tandem_Repeat 64773 64814 84 + . . scaffold42364 GLEAN mRNA 71835 71873 0.650511 - . ID=CGI_10006721; scaffold42364 TRF Tandem_Repeat 71835 71873 78 + . . scaffold42364 GLEAN mRNA 72030 72085 0.650511 - . ID=CGI_10006721; scaffold42364 TRF Tandem_Repeat 72030 72085 112 + . . scaffold42364 GLEAN mRNA 48243 48988 0.61511 + . ID=CGI_10006722; scaffold42364 TRF Tandem_Repeat 48243 48988 488 + . . scaffold42364 GLEAN mRNA 55022 55176 0.61511 + . ID=CGI_10006722; scaffold42364 TRF Tandem_Repeat 55022 55176 118 + . . scaffold42364 GLEAN mRNA 74783 74808 0.999923 + . ID=CGI_10006723; scaffold42364 TRF Tandem_Repeat 74783 74808 52 + . . scaffold42364 GLEAN mRNA 78047 78082 0.999923 + . ID=CGI_10006723; scaffold42364 TRF Tandem_Repeat 78047 78082 72 + . . scaffold42364 GLEAN mRNA 76019 76240 0.999923 + . ID=CGI_10006723; scaffold42364 WUBlastX LINE_CR1-L2 76019 76240 106 - . . scaffold42364 GLEAN mRNA 74842 76011 0.999923 + . ID=CGI_10006723; scaffold42364 WUBlastX LINE_L2 74842 76011 277 - . . scaffold42364 GLEAN mRNA 76007 76186 0.999923 + . ID=CGI_10006723; scaffold42364 WUBlastX LINE_L2 76007 76186 110 - . . scaffold42364 GLEAN mRNA 76004 76306 0.999923 + . ID=CGI_10006723; scaffold42364 WUBlastX LINE_CR1-L2 76004 76306 85 - . . scaffold42364 GLEAN mRNA 74217 75479 0.999923 + . ID=CGI_10006723; scaffold42364 WUBlastX LINE_L2 74217 75479 188 - . . scaffold42364 GLEAN mRNA 76010 76390 0.999923 + . ID=CGI_10006723; scaffold42364 WUBlastX LINE_Rex-Babar 76010 76390 35 - . . scaffold42364 GLEAN mRNA 74166 74375 0.999923 + . ID=CGI_10006723; scaffold42364 WUBlastX LINE_L2 74166 74375 31 - . . scaffold42364 GLEAN mRNA 73859 74110 0.999923 + . ID=CGI_10006723; scaffold42364 WUBlastX LINE_CR1-L2 73859 74110 36 - . . scaffold42364 GLEAN mRNA 74590 76053 0.999923 + . ID=CGI_10006723; scaffold42364 WUBlastX LINE_CR1-L2 74590 76053 189 - . . scaffold42364 GLEAN mRNA 85787 85823 0.999923 + . ID=CGI_10006723; scaffold42364 TRF Tandem_Repeat 85787 85823 74 + . . scaffold42364 GLEAN mRNA 87164 87188 0.999923 + . ID=CGI_10006723; scaffold42364 TRF Tandem_Repeat 87164 87188 50 + . . scaffold42364 GLEAN mRNA 87258 87298 0.999923 + . ID=CGI_10006723; scaffold42364 TRF Tandem_Repeat 87258 87298 82 + . . scaffold42364 GLEAN mRNA 124459 124494 0.999675 + . ID=CGI_10006727; scaffold42364 TRF Tandem_Repeat 124459 124494 63 + . . scaffold42364 GLEAN mRNA 134203 134617 0.841136 - . ID=CGI_10006728; scaffold42364 TRF Tandem_Repeat 134203 134617 568 + . . scaffold42364 GLEAN mRNA 141456 142567 0.841136 - . ID=CGI_10006728; scaffold42364 TRF Tandem_Repeat 141456 142567 1763 + . . scaffold42364 GLEAN mRNA 145231 145290 0.841136 - . ID=CGI_10006728; scaffold42364 TRF Tandem_Repeat 145231 145290 52 + . . scaffold42380 GLEAN mRNA 3838 3904 0.346437 + . ID=CGI_10006729; scaffold42380 TRF Tandem_Repeat 3838 3904 89 + . . scaffold42380 GLEAN mRNA 4368 4403 0.346437 + . ID=CGI_10006729; scaffold42380 TRF Tandem_Repeat 4368 4403 63 + . . scaffold42380 GLEAN mRNA 4401 4429 0.346437 + . ID=CGI_10006729; scaffold42380 TRF Tandem_Repeat 4401 4429 58 + . . scaffold42380 GLEAN mRNA 6899 6951 0.346437 + . ID=CGI_10006729; scaffold42380 TRF Tandem_Repeat 6899 6951 79 + . . scaffold42380 GLEAN mRNA 24819 24864 0.346437 + . ID=CGI_10006729; scaffold42380 TRF Tandem_Repeat 24819 24864 92 + . . scaffold42380 GLEAN mRNA 24868 24918 0.346437 + . ID=CGI_10006729; scaffold42380 TRF Tandem_Repeat 24868 24918 68 + . . scaffold42380 GLEAN mRNA 27683 27921 0.346437 + . ID=CGI_10006729; scaffold42380 TRF Tandem_Repeat 27683 27921 289 + . . scaffold42380 GLEAN mRNA 27683 27921 0.346437 + . ID=CGI_10006729; scaffold42380 TRF Tandem_Repeat 27683 27921 289 + . . scaffold42380 GLEAN mRNA 28567 28765 0.346437 + . ID=CGI_10006729; scaffold42380 TRF Tandem_Repeat 28567 28765 238 + . . scaffold42380 GLEAN mRNA 29442 29567 0.346437 + . ID=CGI_10006729; scaffold42380 TRF Tandem_Repeat 29442 29567 171 + . . scaffold42380 GLEAN mRNA 29450 29551 0.346437 + . ID=CGI_10006729; scaffold42380 TRF Tandem_Repeat 29450 29551 127 + . . scaffold42380 GLEAN mRNA 32279 32322 0.346437 + . ID=CGI_10006729; scaffold42380 TRF Tandem_Repeat 32279 32322 79 + . . scaffold42380 GLEAN mRNA 83871 83924 1 + . ID=CGI_10006731; scaffold42380 TRF Tandem_Repeat 83871 83924 90 + . . scaffold42380 GLEAN mRNA 86051 86094 1 + . ID=CGI_10006731; scaffold42380 TRF Tandem_Repeat 86051 86094 88 + . . scaffold42380 GLEAN mRNA 89006 89049 1 + . ID=CGI_10006731; scaffold42380 TRF Tandem_Repeat 89006 89049 88 + . . scaffold42380 GLEAN mRNA 96160 96234 1 + . ID=CGI_10006731; scaffold42380 TRF Tandem_Repeat 96160 96234 127 + . . scaffold42380 GLEAN mRNA 92802 93017 1 + . ID=CGI_10006731; scaffold42380 WUBlastX LINE_RTE-X 92802 93017 53 - . . scaffold42380 GLEAN mRNA 106800 106853 1 + . ID=CGI_10006731; scaffold42380 TRF Tandem_Repeat 106800 106853 108 + . . scaffold42380 GLEAN mRNA 129068 129512 0.906077 - . ID=CGI_10006733; scaffold42380 TRF Tandem_Repeat 129068 129512 505 + . . scaffold1493 GLEAN mRNA 26752 28045 1 - . ID=CGI_10006737; scaffold1493 TRF Tandem_Repeat 26752 28045 1883 + . . scaffold1493 GLEAN mRNA 28069 28126 1 - . ID=CGI_10006737; scaffold1493 TRF Tandem_Repeat 28069 28126 71 + . . scaffold1493 GLEAN mRNA 28069 28130 1 - . ID=CGI_10006737; scaffold1493 TRF Tandem_Repeat 28069 28130 97 + . . scaffold1493 GLEAN mRNA 28069 28134 1 - . ID=CGI_10006737; scaffold1493 TRF Tandem_Repeat 28069 28134 105 + . . scaffold1493 GLEAN mRNA 28076 28135 1 - . ID=CGI_10006737; scaffold1493 TRF Tandem_Repeat 28076 28135 57 + . . scaffold1493 GLEAN mRNA 40762 41086 0.999351 + . ID=CGI_10006738; scaffold1493 TRF Tandem_Repeat 40762 41086 569 + . . scaffold1493 GLEAN mRNA 93831 93877 0.99155 + . ID=CGI_10006742; scaffold1493 TRF Tandem_Repeat 93831 93877 94 + . . scaffold1493 GLEAN mRNA 94283 94336 0.99155 + . ID=CGI_10006742; scaffold1493 WUBlastX DNA_Harbinger 94283 94336 21 + . . scaffold1493 GLEAN mRNA 92973 93449 0.99155 + . ID=CGI_10006742; scaffold1493 WUBlastX DNA_Harbinger 92973 93449 153 + . . scaffold1493 GLEAN mRNA 140798 140839 0.414594 - . ID=CGI_10006743; scaffold1493 TRF Tandem_Repeat 140798 140839 84 + . . scaffold1493 GLEAN mRNA 153581 153626 1 + . ID=CGI_10006744; scaffold1493 TRF Tandem_Repeat 153581 153626 85 + . . scaffold42408 GLEAN mRNA 112779 113108 0.832978 - . ID=CGI_10006751; scaffold42408 WUBlastX LINE_L1-Tx1 112779 113108 91 + . . scaffold42408 GLEAN mRNA 113418 113525 0.832978 - . ID=CGI_10006751; scaffold42408 WUBlastX LINE_L1-Tx1 113418 113525 22 + . . scaffold42408 GLEAN mRNA 112982 113233 0.832978 - . ID=CGI_10006751; scaffold42408 WUBlastX LINE_L1 112982 113233 71 + . . scaffold42408 GLEAN mRNA 112851 113072 0.832978 - . ID=CGI_10006751; scaffold42408 WUBlastX LINE_L1-Tx1 112851 113072 94 + . . scaffold42408 GLEAN mRNA 113436 113525 0.832978 - . ID=CGI_10006751; scaffold42408 WUBlastX LINE_L1-Tx1 113436 113525 31 + . . scaffold42408 GLEAN mRNA 112656 113069 0.832978 - . ID=CGI_10006751; scaffold42408 WUBlastX LINE_L1 112656 113069 54 + . . scaffold42408 GLEAN mRNA 113084 113272 0.832978 - . ID=CGI_10006751; scaffold42408 WUBlastX LINE_L1-Tx1 113084 113272 60 + . . scaffold42408 GLEAN mRNA 113042 113380 0.832978 - . ID=CGI_10006751; scaffold42408 WUBlastX LINE_L1-Tx1 113042 113380 46 + . . scaffold42390 GLEAN mRNA 9196 9236 0.836238 - . ID=CGI_10006753; scaffold42390 TRF Tandem_Repeat 9196 9236 82 + . . scaffold503 GLEAN mRNA 81613 82444 0.999769 + . ID=CGI_10006762; scaffold503 TRF Tandem_Repeat 81613 82444 985 + . . scaffold503 GLEAN mRNA 155719 155887 0.999509 + . ID=CGI_10006766; scaffold503 TRF Tandem_Repeat 155719 155887 162 + . . scaffold1468 GLEAN mRNA 53913 54506 0.734544 - . ID=CGI_10006770; scaffold1468 TRF Tandem_Repeat 53913 54506 713 + . . scaffold1468 GLEAN mRNA 53925 54506 0.734544 - . ID=CGI_10006770; scaffold1468 TRF Tandem_Repeat 53925 54506 832 + . . scaffold1468 GLEAN mRNA 53913 54506 0.734544 - . ID=CGI_10006770; scaffold1468 TRF Tandem_Repeat 53913 54506 750 + . . scaffold1468 GLEAN mRNA 142167 142193 0.815837 + . ID=CGI_10006780; scaffold1468 TRF Tandem_Repeat 142167 142193 54 + . . scaffold42392 GLEAN mRNA 77852 77907 0.648545 - . ID=CGI_10006782; scaffold42392 TRF Tandem_Repeat 77852 77907 112 + . . scaffold42392 GLEAN mRNA 93184 93236 0.999674 + . ID=CGI_10006784; scaffold42392 TRF Tandem_Repeat 93184 93236 97 + . . scaffold42392 GLEAN mRNA 94061 94104 0.999674 + . ID=CGI_10006784; scaffold42392 TRF Tandem_Repeat 94061 94104 88 + . . scaffold42392 GLEAN mRNA 109732 109804 0.476918 + . ID=CGI_10006785; scaffold42392 TRF Tandem_Repeat 109732 109804 68 + . . scaffold42392 GLEAN mRNA 109734 109804 0.476918 + . ID=CGI_10006785; scaffold42392 TRF Tandem_Repeat 109734 109804 78 + . . scaffold42392 GLEAN mRNA 114159 114221 0.476918 + . ID=CGI_10006785; scaffold42392 TRF Tandem_Repeat 114159 114221 90 + . . scaffold42392 GLEAN mRNA 114378 114668 0.476918 + . ID=CGI_10006785; scaffold42392 WUBlastX LINE_L2 114378 114668 35 - . . scaffold42392 GLEAN mRNA 114330 114722 0.476918 + . ID=CGI_10006785; scaffold42392 WUBlastX LINE_CR1-L2 114330 114722 30 - . . scaffold42392 GLEAN mRNA 148067 148840 0.782062 + . ID=CGI_10006786; scaffold42392 WUBlastX LTR_Gypsy-Cigr 148067 148840 292 - . . scaffold42392 GLEAN mRNA 147507 148058 0.782062 + . ID=CGI_10006786; scaffold42392 WUBlastX LTR_Gypsy-Cigr 147507 148058 150 - . . scaffold42392 GLEAN mRNA 147606 148058 0.782062 + . ID=CGI_10006786; scaffold42392 WUBlastX LTR_Gypsy 147606 148058 170 - . . scaffold42392 GLEAN mRNA 148208 149065 0.782062 + . ID=CGI_10006786; scaffold42392 WUBlastX LTR_Gypsy 148208 149065 23 - . . scaffold42402 GLEAN mRNA 41258 41516 0.999675 - . ID=CGI_10006790; scaffold42402 TRF Tandem_Repeat 41258 41516 245 + . . scaffold42402 GLEAN mRNA 43149 43722 0.999675 - . ID=CGI_10006790; scaffold42402 TRF Tandem_Repeat 43149 43722 837 + . . scaffold42402 GLEAN mRNA 44617 44922 0.999675 - . ID=CGI_10006790; scaffold42402 TRF Tandem_Repeat 44617 44922 277 + . . scaffold42402 GLEAN mRNA 48917 49838 0.999675 - . ID=CGI_10006790; scaffold42402 TRF Tandem_Repeat 48917 49838 1251 + . . scaffold42402 GLEAN mRNA 53896 54295 0.999913 + . ID=CGI_10006791; scaffold42402 TRF Tandem_Repeat 53896 54295 349 + . . scaffold42402 GLEAN mRNA 55754 55893 0.999913 + . ID=CGI_10006791; scaffold42402 TRF Tandem_Repeat 55754 55893 217 + . . scaffold42402 GLEAN mRNA 70611 71140 0.81141 - . ID=CGI_10006792; scaffold42402 TRF Tandem_Repeat 70611 71140 851 + . . scaffold42402 GLEAN mRNA 77971 78293 0.81141 - . ID=CGI_10006792; scaffold42402 TRF Tandem_Repeat 77971 78293 592 + . . scaffold42402 GLEAN mRNA 96245 96438 0.915589 + . ID=CGI_10006793; scaffold42402 TRF Tandem_Repeat 96245 96438 222 + . . scaffold42402 GLEAN mRNA 97568 97722 0.915589 + . ID=CGI_10006793; scaffold42402 TRF Tandem_Repeat 97568 97722 199 + . . scaffold42402 GLEAN mRNA 99443 99509 0.915589 + . ID=CGI_10006793; scaffold42402 TRF Tandem_Repeat 99443 99509 120 + . . scaffold42402 GLEAN mRNA 101526 101742 0.915589 + . ID=CGI_10006793; scaffold42402 TRF Tandem_Repeat 101526 101742 368 + . . scaffold42402 GLEAN mRNA 104326 104749 0.915589 + . ID=CGI_10006793; scaffold42402 TRF Tandem_Repeat 104326 104749 512 + . . scaffold42402 GLEAN mRNA 104326 104719 0.915589 + . ID=CGI_10006793; scaffold42402 TRF Tandem_Repeat 104326 104719 465 + . . scaffold42402 GLEAN mRNA 116507 116729 1 - . ID=CGI_10006794; scaffold42402 TRF Tandem_Repeat 116507 116729 306 + . . scaffold42402 GLEAN mRNA 120113 121867 1 - . ID=CGI_10006794; scaffold42402 TRF Tandem_Repeat 120113 121867 1944 + . . scaffold42402 GLEAN mRNA 121178 121484 1 - . ID=CGI_10006794; scaffold42402 TRF Tandem_Repeat 121178 121484 186 + . . scaffold42402 GLEAN mRNA 130059 130262 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 130059 130262 68 + . . scaffold42402 GLEAN mRNA 129965 130099 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 129965 130099 39 + . . scaffold42402 GLEAN mRNA 131188 131244 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 131188 131244 28 + . . scaffold42402 GLEAN mRNA 131167 131223 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 131167 131223 44 + . . scaffold42402 GLEAN mRNA 131009 131158 0.999027 - . ID=CGI_10006795; scaffold42402 WUBlastX LINE_RTE-X 131009 131158 86 + . . scaffold42402 GLEAN mRNA 130059 130262 1 + . ID=CGI_10006796; scaffold42402 WUBlastX LINE_RTE-X 130059 130262 68 + . . scaffold42402 GLEAN mRNA 129965 130099 1 + . ID=CGI_10006796; scaffold42402 WUBlastX LINE_RTE-X 129965 130099 39 + . . scaffold42402 GLEAN mRNA 131188 131244 1 + . ID=CGI_10006796; scaffold42402 WUBlastX LINE_RTE-X 131188 131244 28 + . . scaffold42402 GLEAN mRNA 131167 131223 1 + . ID=CGI_10006796; scaffold42402 WUBlastX LINE_RTE-X 131167 131223 44 + . . scaffold42402 GLEAN mRNA 131009 131158 1 + . ID=CGI_10006796; scaffold42402 WUBlastX LINE_RTE-X 131009 131158 86 + . . scaffold1220 GLEAN mRNA 17455 17506 1 - . ID=CGI_10006798; scaffold1220 TRF Tandem_Repeat 17455 17506 97 + . . scaffold1220 GLEAN mRNA 17701 17733 1 - . ID=CGI_10006798; scaffold1220 TRF Tandem_Repeat 17701 17733 66 + . . scaffold1220 GLEAN mRNA 19693 19760 1 - . ID=CGI_10006798; scaffold1220 TRF Tandem_Repeat 19693 19760 127 + . . scaffold1220 GLEAN mRNA 19693 19760 0.650854 + . ID=CGI_10006799; scaffold1220 TRF Tandem_Repeat 19693 19760 127 + . . scaffold1220 GLEAN mRNA 20411 20448 0.650854 + . ID=CGI_10006799; scaffold1220 TRF Tandem_Repeat 20411 20448 76 + . . scaffold1220 GLEAN mRNA 32753 32790 0.738573 - . ID=CGI_10006800; scaffold1220 TRF Tandem_Repeat 32753 32790 76 + . . scaffold1220 GLEAN mRNA 68880 68915 0.99949 - . ID=CGI_10006801; scaffold1220 TRF Tandem_Repeat 68880 68915 72 + . . scaffold1220 GLEAN mRNA 92299 92326 0.999675 - . ID=CGI_10006803; scaffold1220 TRF Tandem_Repeat 92299 92326 56 + . . scaffold1220 GLEAN mRNA 92433 92481 0.999675 - . ID=CGI_10006803; scaffold1220 TRF Tandem_Repeat 92433 92481 98 + . . scaffold1220 GLEAN mRNA 92551 92614 0.999675 - . ID=CGI_10006803; scaffold1220 TRF Tandem_Repeat 92551 92614 103 + . . scaffold1220 GLEAN mRNA 98355 98827 0.999676 + . ID=CGI_10006804; scaffold1220 TRF Tandem_Repeat 98355 98827 795 + . . scaffold1220 GLEAN mRNA 100708 100805 0.999676 + . ID=CGI_10006804; scaffold1220 TRF Tandem_Repeat 100708 100805 171 + . . scaffold1220 GLEAN mRNA 101488 101573 0.999676 + . ID=CGI_10006804; scaffold1220 TRF Tandem_Repeat 101488 101573 108 + . . scaffold1220 GLEAN mRNA 155678 155707 1 - . ID=CGI_10006808; scaffold1220 TRF Tandem_Repeat 155678 155707 51 + . . scaffold243 GLEAN mRNA 13481 13903 0.981358 - . ID=CGI_10006809; scaffold243 WUBlastX RC_Helitron 13481 13903 384 - . . scaffold243 GLEAN mRNA 16661 16687 0.981358 - . ID=CGI_10006809; scaffold243 TRF Tandem_Repeat 16661 16687 54 + . . scaffold243 GLEAN mRNA 37101 37157 0.608898 - . ID=CGI_10006812; scaffold243 TRF Tandem_Repeat 37101 37157 114 + . . scaffold243 GLEAN mRNA 37101 37157 0.996041 + . ID=CGI_10006813; scaffold243 TRF Tandem_Repeat 37101 37157 114 + . . scaffold243 GLEAN mRNA 43015 43761 0.996041 + . ID=CGI_10006813; scaffold243 WUBlastX DNA_hAT-Tip100 43015 43761 291 + . . scaffold243 GLEAN mRNA 43902 44114 0.996041 + . ID=CGI_10006813; scaffold243 WUBlastX DNA_hAT-Tip100 43902 44114 42 + . . scaffold243 GLEAN mRNA 44457 44495 0.996041 + . ID=CGI_10006813; scaffold243 WUBlastX DNA_hAT-Tip100 44457 44495 20 + . . scaffold243 GLEAN mRNA 46617 46823 0.518363 - . ID=CGI_10006814; scaffold243 WUBlastX DNA_Kolobok 46617 46901 151 - . . scaffold243 GLEAN mRNA 45931 46275 0.518363 - . ID=CGI_10006814; scaffold243 WUBlastX DNA_Kolobok 45931 46275 159 - . . scaffold243 GLEAN mRNA 45771 45845 0.518363 - . ID=CGI_10006814; scaffold243 WUBlastX DNA_Kolobok 45771 45845 34 - . . scaffold243 GLEAN mRNA 45931 46206 0.518363 - . ID=CGI_10006814; scaffold243 WUBlastX DNA_Kolobok 45931 46206 165 - . . scaffold243 GLEAN mRNA 108387 108593 0.913043 + . ID=CGI_10006817; scaffold243 WUBlastX LINE_RTE-BovB 108387 108593 118 - . . scaffold243 GLEAN mRNA 121564 121590 0.913043 + . ID=CGI_10006817; scaffold243 TRF Tandem_Repeat 121564 121590 54 + . . scaffold243 GLEAN mRNA 118838 119242 0.913043 + . ID=CGI_10006817; scaffold243 WUBlastX LTR_Gypsy 118838 119242 38 - . . scaffold243 GLEAN mRNA 116919 116960 0.913043 + . ID=CGI_10006817; scaffold243 WUBlastX LTR_Gypsy 116919 116960 20 - . . scaffold243 GLEAN mRNA 117568 117699 0.913043 + . ID=CGI_10006817; scaffold243 WUBlastX LTR_Gypsy 117568 117699 75 - . . scaffold243 GLEAN mRNA 117674 118318 0.913043 + . ID=CGI_10006817; scaffold243 WUBlastX LTR_Gypsy 117674 118318 474 - . . scaffold243 GLEAN mRNA 119476 119916 0.913043 + . ID=CGI_10006817; scaffold243 WUBlastX LTR_Gypsy 119476 119916 48 - . . scaffold243 GLEAN mRNA 117632 119119 0.913043 + . ID=CGI_10006817; scaffold243 WUBlastX LTR_Gypsy-Cigr 117632 119119 380 - . . scaffold243 GLEAN mRNA 119766 119916 0.777732 - . ID=CGI_10006818; scaffold243 WUBlastX LTR_Gypsy 119476 119916 48 - . . scaffold275 GLEAN mRNA 56605 56698 0.544684 + . ID=CGI_10006824; scaffold275 TRF Tandem_Repeat 56605 56698 118 + . . scaffold275 GLEAN mRNA 136602 136677 0.354636 - . ID=CGI_10006826; scaffold275 TRF Tandem_Repeat 136602 136677 107 + . . scaffold971 GLEAN mRNA 32557 32602 0.450997 + . ID=CGI_10006831; scaffold971 TRF Tandem_Repeat 32557 32602 92 + . . scaffold971 GLEAN mRNA 20060 20194 0.450997 + . ID=CGI_10006831; scaffold971 WUBlastX LINE_L2 20060 20194 49 - . . scaffold971 GLEAN mRNA 141778 141984 0.999776 + . ID=CGI_10006835; scaffold971 TRF Tandem_Repeat 141778 141984 168 + . . scaffold971 GLEAN mRNA 142071 142279 0.999776 + . ID=CGI_10006835; scaffold971 TRF Tandem_Repeat 142071 142279 214 + . . scaffold971 GLEAN mRNA 158161 158274 0.999999 + . ID=CGI_10006837; scaffold971 TRF Tandem_Repeat 158161 158274 140 + . . scaffold971 GLEAN mRNA 159553 159749 0.999999 + . ID=CGI_10006837; scaffold971 TRF Tandem_Repeat 159553 159749 163 + . . scaffold971 GLEAN mRNA 159536 159753 0.999999 + . ID=CGI_10006837; scaffold971 TRF Tandem_Repeat 159536 159753 184 + . . scaffold924 GLEAN mRNA 39924 40019 0.322694 + . ID=CGI_10006838; scaffold924 WUBlastX DNA_Sola 39477 40019 74 + . . scaffold924 GLEAN mRNA 40732 40965 0.322694 + . ID=CGI_10006838; scaffold924 WUBlastX DNA_Sola 40732 40965 34 + . . scaffold924 GLEAN mRNA 39924 40133 0.322694 + . ID=CGI_10006838; scaffold924 WUBlastX DNA_Sola 39540 40133 48 + . . scaffold42422 GLEAN mRNA 15003 15099 0.860881 + . ID=CGI_10006848; scaffold42422 TRF Tandem_Repeat 15003 15099 180 + . . scaffold42422 GLEAN mRNA 43421 43467 0.805775 + . ID=CGI_10006849; scaffold42422 TRF Tandem_Repeat 43421 43467 85 + . . scaffold42422 GLEAN mRNA 53381 53414 1 - . ID=CGI_10006850; scaffold42422 TRF Tandem_Repeat 53381 53414 50 + . . scaffold42422 GLEAN mRNA 104516 104559 1 + . ID=CGI_10006853; scaffold42422 TRF Tandem_Repeat 104516 104559 79 + . . scaffold42422 GLEAN mRNA 106103 106170 1 + . ID=CGI_10006853; scaffold42422 TRF Tandem_Repeat 106103 106170 70 + . . scaffold42422 GLEAN mRNA 159643 159669 0.875625 - . ID=CGI_10006856; scaffold42422 TRF Tandem_Repeat 159643 159669 54 + . . scaffold456 GLEAN mRNA 68419 68461 0.998379 - . ID=CGI_10006860; scaffold456 TRF Tandem_Repeat 68419 68461 86 + . . scaffold456 GLEAN mRNA 68541 68576 0.998379 - . ID=CGI_10006860; scaffold456 TRF Tandem_Repeat 68541 68576 72 + . . scaffold456 GLEAN mRNA 120079 120355 0.577611 + . ID=CGI_10006863; scaffold456 TRF Tandem_Repeat 120079 120355 266 + . . scaffold456 GLEAN mRNA 120087 120337 0.577611 + . ID=CGI_10006863; scaffold456 TRF Tandem_Repeat 120087 120337 333 + . . scaffold456 GLEAN mRNA 120079 120392 0.577611 + . ID=CGI_10006863; scaffold456 TRF Tandem_Repeat 120079 120392 301 + . . scaffold456 GLEAN mRNA 121932 122026 0.577611 + . ID=CGI_10006863; scaffold456 TRF Tandem_Repeat 121932 122026 59 + . . scaffold456 GLEAN mRNA 127715 127740 0.577611 + . ID=CGI_10006863; scaffold456 TRF Tandem_Repeat 127715 127740 52 + . . scaffold456 GLEAN mRNA 141504 141767 0.577611 + . ID=CGI_10006863; scaffold456 WUBlastX LTR_Gypsy 141504 141767 105 + . . scaffold456 GLEAN mRNA 140570 140617 0.577611 + . ID=CGI_10006863; scaffold456 WUBlastX LTR_Gypsy 140570 140617 24 + . . scaffold456 GLEAN mRNA 141968 142741 0.577611 + . ID=CGI_10006863; scaffold456 WUBlastX LTR_Gypsy 141968 142741 220 + . . scaffold456 GLEAN mRNA 141585 141992 0.577611 + . ID=CGI_10006863; scaffold456 WUBlastX LTR_Gypsy 141585 141992 152 + . . scaffold456 GLEAN mRNA 141567 141818 0.577611 + . ID=CGI_10006863; scaffold456 WUBlastX LTR_Gypsy 141567 141818 207 + . . scaffold456 GLEAN mRNA 141573 141899 0.577611 + . ID=CGI_10006863; scaffold456 WUBlastX LTR_Gypsy 141573 141899 174 + . . scaffold456 GLEAN mRNA 138959 139087 0.577611 + . ID=CGI_10006863; scaffold456 WUBlastX LTR_Ngaro 138959 139087 38 + . . scaffold456 GLEAN mRNA 141402 141776 0.577611 + . ID=CGI_10006863; scaffold456 WUBlastX LTR_Gypsy 141402 141776 73 + . . scaffold456 GLEAN mRNA 137942 138583 0.577611 + . ID=CGI_10006863; scaffold456 WUBlastX LTR_Ngaro 137942 138583 187 + . . scaffold456 GLEAN mRNA 142031 142684 0.577611 + . ID=CGI_10006863; scaffold456 WUBlastX LTR_Gypsy 142031 142684 605 + . . scaffold837 GLEAN mRNA 76106 76192 1 - . ID=CGI_10006869; scaffold837 TRF Tandem_Repeat 76106 76192 138 + . . scaffold837 GLEAN mRNA 91328 92250 1 - . ID=CGI_10006870; scaffold837 TRF Tandem_Repeat 91328 92250 1471 + . . scaffold837 GLEAN mRNA 95333 95420 1 - . ID=CGI_10006870; scaffold837 TRF Tandem_Repeat 95333 95420 131 + . . scaffold837 GLEAN mRNA 107124 107367 0.99915 + . ID=CGI_10006871; scaffold837 TRF Tandem_Repeat 107124 107367 142 + . . scaffold837 GLEAN mRNA 111711 111769 0.99915 + . ID=CGI_10006871; scaffold837 TRF Tandem_Repeat 111711 111769 111 + . . scaffold837 GLEAN mRNA 112531 112621 0.99915 + . ID=CGI_10006871; scaffold837 TRF Tandem_Repeat 112531 112621 128 + . . scaffold837 GLEAN mRNA 113197 113495 0.99915 + . ID=CGI_10006871; scaffold837 TRF Tandem_Repeat 113197 113495 291 + . . scaffold837 GLEAN mRNA 124484 124529 0.330154 - . ID=CGI_10006872; scaffold837 TRF Tandem_Repeat 124484 124529 92 + . . scaffold837 GLEAN mRNA 125507 125616 0.330154 - . ID=CGI_10006872; scaffold837 TRF Tandem_Repeat 125507 125616 65 + . . scaffold837 GLEAN mRNA 125776 125867 0.330154 - . ID=CGI_10006872; scaffold837 TRF Tandem_Repeat 125776 125867 72 + . . scaffold837 GLEAN mRNA 126212 126326 0.330154 - . ID=CGI_10006872; scaffold837 TRF Tandem_Repeat 126212 126326 83 + . . scaffold837 GLEAN mRNA 129775 130464 0.330154 - . ID=CGI_10006872; scaffold837 TRF Tandem_Repeat 129775 130464 988 + . . scaffold837 GLEAN mRNA 132877 133969 0.330154 - . ID=CGI_10006872; scaffold837 TRF Tandem_Repeat 132877 133969 1672 + . . scaffold837 GLEAN mRNA 132877 133963 0.330154 - . ID=CGI_10006872; scaffold837 TRF Tandem_Repeat 132877 133963 1587 + . . scaffold837 GLEAN mRNA 152171 152959 0.330154 - . ID=CGI_10006872; scaffold837 TRF Tandem_Repeat 152171 152959 1007 + . . scaffold837 GLEAN mRNA 161916 161969 0.330154 - . ID=CGI_10006872; scaffold837 TRF Tandem_Repeat 161916 161969 63 + . . scaffold837 GLEAN mRNA 161916 161963 0.330154 - . ID=CGI_10006872; scaffold837 TRF Tandem_Repeat 161916 161963 69 + . . scaffold42448 GLEAN mRNA 40803 40865 0.839335 + . ID=CGI_10006877; scaffold42448 TRF Tandem_Repeat 40803 40865 54 + . . scaffold42448 GLEAN mRNA 43120 43216 0.839335 + . ID=CGI_10006877; scaffold42448 TRF Tandem_Repeat 43120 43216 59 + . . scaffold42448 GLEAN mRNA 43277 43345 0.839335 + . ID=CGI_10006877; scaffold42448 TRF Tandem_Repeat 43277 43345 57 + . . scaffold42448 GLEAN mRNA 43120 43216 0.999393 - . ID=CGI_10006878; scaffold42448 TRF Tandem_Repeat 43120 43216 59 + . . scaffold42448 GLEAN mRNA 43277 43345 0.999393 - . ID=CGI_10006878; scaffold42448 TRF Tandem_Repeat 43277 43345 57 + . . scaffold42448 GLEAN mRNA 126029 126211 0.638734 - . ID=CGI_10006884; scaffold42448 TRF Tandem_Repeat 126029 126211 280 + . . scaffold42448 GLEAN mRNA 126019 126227 0.638734 - . ID=CGI_10006884; scaffold42448 TRF Tandem_Repeat 126019 126227 201 + . . scaffold42448 GLEAN mRNA 134463 134929 0.660675 - . ID=CGI_10006885; scaffold42448 TRF Tandem_Repeat 134463 134929 727 + . . scaffold42448 GLEAN mRNA 149348 150229 0.761236 + . ID=CGI_10006886; scaffold42448 TRF Tandem_Repeat 149348 150229 1281 + . . scaffold587 GLEAN mRNA 5030 5076 0.999375 - . ID=CGI_10006887; scaffold587 TRF Tandem_Repeat 5030 5076 67 + . . scaffold587 GLEAN mRNA 3017 3547 0.999375 - . ID=CGI_10006887; scaffold587 WUBlastX DNA_TcMar-ISRm1 3017 3547 113 + . . scaffold587 GLEAN mRNA 2789 3472 0.999375 - . ID=CGI_10006887; scaffold587 WUBlastX DNA_TcMar-ISRm1 2789 3472 104 + . . scaffold587 GLEAN mRNA 2562 2816 0.999375 - . ID=CGI_10006887; scaffold587 WUBlastX DNA_TcMar-Stowa 2562 2816 60 + . . scaffold587 GLEAN mRNA 8536 8581 0.999675 - . ID=CGI_10006888; scaffold587 TRF Tandem_Repeat 8536 8581 92 + . . scaffold587 GLEAN mRNA 10230 10282 0.999675 - . ID=CGI_10006888; scaffold587 TRF Tandem_Repeat 10230 10282 88 + . . scaffold587 GLEAN mRNA 10553 10592 0.999675 - . ID=CGI_10006888; scaffold587 TRF Tandem_Repeat 10553 10592 80 + . . scaffold587 GLEAN mRNA 13487 14261 0.999675 - . ID=CGI_10006888; scaffold587 TRF Tandem_Repeat 13487 14261 1234 + . . scaffold587 GLEAN mRNA 15300 15412 0.999675 - . ID=CGI_10006888; scaffold587 TRF Tandem_Repeat 15300 15412 172 + . . scaffold587 GLEAN mRNA 16462 17055 0.999675 - . ID=CGI_10006888; scaffold587 TRF Tandem_Repeat 16462 17055 565 + . . scaffold587 GLEAN mRNA 21067 21111 0.999675 - . ID=CGI_10006888; scaffold587 TRF Tandem_Repeat 21067 21111 90 + . . scaffold587 GLEAN mRNA 21783 22486 0.999675 - . ID=CGI_10006888; scaffold587 TRF Tandem_Repeat 21783 22486 989 + . . scaffold587 GLEAN mRNA 68640 68685 0.999436 + . ID=CGI_10006890; scaffold587 TRF Tandem_Repeat 68640 68685 92 + . . scaffold587 GLEAN mRNA 108158 108188 0.701684 + . ID=CGI_10006892; scaffold587 TRF Tandem_Repeat 108158 108188 53 + . . scaffold587 GLEAN mRNA 110464 110498 0.701684 + . ID=CGI_10006892; scaffold587 TRF Tandem_Repeat 110464 110498 70 + . . scaffold587 GLEAN mRNA 110704 110871 0.701684 + . ID=CGI_10006892; scaffold587 WUBlastX LINE_L2 110704 110871 77 - . . scaffold587 GLEAN mRNA 115477 115520 0.701684 + . ID=CGI_10006892; scaffold587 TRF Tandem_Repeat 115477 115520 88 + . . scaffold587 GLEAN mRNA 122479 122534 0.701684 + . ID=CGI_10006892; scaffold587 TRF Tandem_Repeat 122479 122534 112 + . . scaffold587 GLEAN mRNA 162681 162804 0.999899 + . ID=CGI_10006894; scaffold587 TRF Tandem_Repeat 162681 162804 59 + . . scaffold42450 GLEAN mRNA 5199 6219 0.999948 - . ID=CGI_10006895; scaffold42450 TRF Tandem_Repeat 5199 6219 1141 + . . scaffold42450 GLEAN mRNA 22363 22416 0.999948 - . ID=CGI_10006895; scaffold42450 TRF Tandem_Repeat 22363 22416 92 + . . scaffold42450 GLEAN mRNA 75304 75350 0.999598 - . ID=CGI_10006899; scaffold42450 TRF Tandem_Repeat 75304 75350 94 + . . scaffold42440 GLEAN mRNA 62122 62168 0.517399 + . ID=CGI_10006902; scaffold42440 TRF Tandem_Repeat 62122 62168 76 + . . scaffold42440 GLEAN mRNA 64221 64254 0.517399 + . ID=CGI_10006902; scaffold42440 TRF Tandem_Repeat 64221 64254 59 + . . scaffold42440 GLEAN mRNA 75369 75458 0.517399 + . ID=CGI_10006902; scaffold42440 TRF Tandem_Repeat 75369 75458 144 + . . scaffold42440 GLEAN mRNA 85667 85706 0.517399 + . ID=CGI_10006902; scaffold42440 TRF Tandem_Repeat 85667 85706 80 + . . scaffold42440 GLEAN mRNA 89562 89602 0.517399 + . ID=CGI_10006902; scaffold42440 TRF Tandem_Repeat 89562 89602 82 + . . scaffold42440 GLEAN mRNA 98446 98495 0.517399 + . ID=CGI_10006902; scaffold42440 TRF Tandem_Repeat 98446 98495 100 + . . scaffold42440 GLEAN mRNA 104999 105214 0.517399 + . ID=CGI_10006902; scaffold42440 TRF Tandem_Repeat 104999 105214 143 + . . scaffold42440 GLEAN mRNA 105005 105247 0.517399 + . ID=CGI_10006902; scaffold42440 TRF Tandem_Repeat 105005 105247 215 + . . scaffold42440 GLEAN mRNA 106949 107011 0.517399 + . ID=CGI_10006902; scaffold42440 TRF Tandem_Repeat 106949 107011 54 + . . scaffold42440 GLEAN mRNA 106949 107073 0.517399 + . ID=CGI_10006902; scaffold42440 TRF Tandem_Repeat 106949 107073 80 + . . scaffold42440 GLEAN mRNA 110159 110212 0.517399 + . ID=CGI_10006902; scaffold42440 TRF Tandem_Repeat 110159 110212 56 + . . scaffold42440 GLEAN mRNA 110144 110212 0.517399 + . ID=CGI_10006902; scaffold42440 TRF Tandem_Repeat 110144 110212 50 + . . scaffold1172 GLEAN mRNA 48057 48134 0.999903 - . ID=CGI_10006905; scaffold1172 TRF Tandem_Repeat 48057 48134 113 + . . scaffold1172 GLEAN mRNA 67175 67213 1 - . ID=CGI_10006907; scaffold1172 TRF Tandem_Repeat 67175 67213 51 + . . scaffold1172 GLEAN mRNA 67761 67793 1 - . ID=CGI_10006907; scaffold1172 TRF Tandem_Repeat 67761 67793 66 + . . scaffold1172 GLEAN mRNA 70765 71342 1 - . ID=CGI_10006907; scaffold1172 TRF Tandem_Repeat 70765 71342 696 + . . scaffold1172 GLEAN mRNA 72739 72763 1 - . ID=CGI_10006907; scaffold1172 TRF Tandem_Repeat 72739 72763 50 + . . scaffold1172 GLEAN mRNA 73209 73976 1 - . ID=CGI_10006907; scaffold1172 TRF Tandem_Repeat 73209 73976 1335 + . . scaffold1172 GLEAN mRNA 74146 74187 1 - . ID=CGI_10006907; scaffold1172 TRF Tandem_Repeat 74146 74187 56 + . . scaffold1172 GLEAN mRNA 74305 74752 1 - . ID=CGI_10006907; scaffold1172 TRF Tandem_Repeat 74305 74752 772 + . . scaffold1172 GLEAN mRNA 76250 76426 1 - . ID=CGI_10006907; scaffold1172 TRF Tandem_Repeat 76250 76426 95 + . . scaffold1172 GLEAN mRNA 77588 77629 1 - . ID=CGI_10006907; scaffold1172 TRF Tandem_Repeat 77588 77629 84 + . . scaffold1172 GLEAN mRNA 85540 85635 0.88765 + . ID=CGI_10006908; scaffold1172 TRF Tandem_Repeat 85540 85635 113 + . . scaffold1172 GLEAN mRNA 87822 87913 0.88765 + . ID=CGI_10006908; scaffold1172 TRF Tandem_Repeat 87822 87913 139 + . . scaffold1172 GLEAN mRNA 95595 95677 0.88765 + . ID=CGI_10006908; scaffold1172 TRF Tandem_Repeat 95595 95677 96 + . . scaffold1172 GLEAN mRNA 95600 95672 0.88765 + . ID=CGI_10006908; scaffold1172 TRF Tandem_Repeat 95600 95672 98 + . . scaffold1172 GLEAN mRNA 139394 139451 0.99998 + . ID=CGI_10006909; scaffold1172 TRF Tandem_Repeat 139394 139451 116 + . . scaffold1172 GLEAN mRNA 143064 143109 0.99998 + . ID=CGI_10006909; scaffold1172 TRF Tandem_Repeat 143064 143109 92 + . . scaffold1172 GLEAN mRNA 135381 135518 0.99998 + . ID=CGI_10006909; scaffold1172 WUBlastX DNA_Kolobok 135381 135518 73 + . . scaffold1172 GLEAN mRNA 135333 135521 0.99998 + . ID=CGI_10006909; scaffold1172 WUBlastX DNA_Kolobok 135333 135521 45 + . . scaffold1172 GLEAN mRNA 136367 136552 0.99998 + . ID=CGI_10006909; scaffold1172 WUBlastX DNA_Kolobok 136367 136552 85 - . . scaffold1172 GLEAN mRNA 134147 134389 0.99998 + . ID=CGI_10006909; scaffold1172 WUBlastX DNA_Kolobok 134147 134389 89 + . . scaffold1172 GLEAN mRNA 136337 136528 0.99998 + . ID=CGI_10006909; scaffold1172 WUBlastX DNA_Kolobok 136337 136528 68 - . . scaffold1172 GLEAN mRNA 136367 136552 0.533411 - . ID=CGI_10006910; scaffold1172 WUBlastX DNA_Kolobok 136367 136552 85 - . . scaffold1172 GLEAN mRNA 136358 136528 0.533411 - . ID=CGI_10006910; scaffold1172 WUBlastX DNA_Kolobok 136337 136528 68 - . . scaffold78 GLEAN mRNA 37269 37350 0.504298 + . ID=CGI_10006914; scaffold78 TRF Tandem_Repeat 37269 37350 164 + . . scaffold78 GLEAN mRNA 41628 41734 0.504298 + . ID=CGI_10006914; scaffold78 TRF Tandem_Repeat 41628 41734 124 + . . scaffold78 GLEAN mRNA 38878 38982 0.504298 + . ID=CGI_10006914; scaffold78 WUBlastX LTR_Gypsy 38878 38982 28 + . . scaffold78 GLEAN mRNA 38648 38926 0.504298 + . ID=CGI_10006914; scaffold78 WUBlastX LTR_Gypsy 38648 38926 69 + . . scaffold78 GLEAN mRNA 38648 38788 0.504298 + . ID=CGI_10006914; scaffold78 WUBlastX LTR_Gypsy 38648 38788 115 + . . scaffold78 GLEAN mRNA 38648 38881 0.504298 + . ID=CGI_10006914; scaffold78 WUBlastX LTR_Gypsy-Cigr 38648 38881 111 + . . scaffold78 GLEAN mRNA 38495 38755 0.504298 + . ID=CGI_10006914; scaffold78 WUBlastX LTR_Gypsy 38495 38755 84 + . . scaffold78 GLEAN mRNA 128337 128474 0.999992 - . ID=CGI_10006916; scaffold78 WUBlastX LINE_RTE-X 128337 128474 29 + . . scaffold647 GLEAN mRNA 48170 48205 0.988865 + . ID=CGI_10006923; scaffold647 TRF Tandem_Repeat 48170 48205 72 + . . scaffold647 GLEAN mRNA 58696 58793 0.614411 - . ID=CGI_10006924; scaffold647 TRF Tandem_Repeat 58696 58793 178 + . . scaffold647 GLEAN mRNA 86359 86420 0.843182 - . ID=CGI_10006925; scaffold647 TRF Tandem_Repeat 86359 86420 65 + . . scaffold647 GLEAN mRNA 101607 101674 0.777888 - . ID=CGI_10006928; scaffold647 TRF Tandem_Repeat 101607 101674 102 + . . scaffold647 GLEAN mRNA 104880 104910 0.988703 + . ID=CGI_10006929; scaffold647 TRF Tandem_Repeat 104880 104910 62 + . . scaffold647 GLEAN mRNA 126241 126734 0.631256 + . ID=CGI_10006931; scaffold647 TRF Tandem_Repeat 126241 126734 988 + . . scaffold647 GLEAN mRNA 127188 127221 0.631256 + . ID=CGI_10006931; scaffold647 TRF Tandem_Repeat 127188 127221 68 + . . scaffold647 GLEAN mRNA 130403 130768 0.631256 + . ID=CGI_10006931; scaffold647 TRF Tandem_Repeat 130403 130768 405 + . . scaffold647 GLEAN mRNA 133417 133472 0.631256 + . ID=CGI_10006931; scaffold647 TRF Tandem_Repeat 133417 133472 55 + . . scaffold647 GLEAN mRNA 135235 135284 0.631256 + . ID=CGI_10006931; scaffold647 TRF Tandem_Repeat 135235 135284 100 + . . scaffold647 GLEAN mRNA 136568 137107 0.631256 + . ID=CGI_10006931; scaffold647 WUBlastX LINE_L1-Tx1 136568 137107 248 - . . scaffold647 GLEAN mRNA 135378 135710 0.631256 + . ID=CGI_10006931; scaffold647 WUBlastX LINE_L1-Tx1 135378 135710 32 - . . scaffold647 GLEAN mRNA 136466 137089 0.631256 + . ID=CGI_10006931; scaffold647 WUBlastX LINE_L1-Tx1 136466 137089 129 - . . scaffold42466 GLEAN mRNA 11257 12275 0.99557 - . ID=CGI_10006933; scaffold42466 TRF Tandem_Repeat 11257 12275 1040 + . . scaffold42466 GLEAN mRNA 17331 17807 0.99557 - . ID=CGI_10006933; scaffold42466 TRF Tandem_Repeat 17331 17807 664 + . . scaffold42466 GLEAN mRNA 26906 27365 0.99557 - . ID=CGI_10006933; scaffold42466 TRF Tandem_Repeat 26906 27365 787 + . . scaffold42466 GLEAN mRNA 29864 30306 0.99557 - . ID=CGI_10006933; scaffold42466 TRF Tandem_Repeat 29864 30306 635 + . . scaffold42466 GLEAN mRNA 38011 38806 0.996819 + . ID=CGI_10006935; scaffold42466 TRF Tandem_Repeat 38011 38806 1240 + . . scaffold42466 GLEAN mRNA 42212 42500 0.999375 - . ID=CGI_10006936; scaffold42466 TRF Tandem_Repeat 42212 42500 170 + . . scaffold42466 GLEAN mRNA 57919 58381 1 - . ID=CGI_10006937; scaffold42466 TRF Tandem_Repeat 57919 58381 521 + . . scaffold42466 GLEAN mRNA 87093 87143 0.999949 - . ID=CGI_10006938; scaffold42466 TRF Tandem_Repeat 87093 87143 102 + . . scaffold42466 GLEAN mRNA 87187 87236 0.999949 - . ID=CGI_10006938; scaffold42466 TRF Tandem_Repeat 87187 87236 100 + . . scaffold42466 GLEAN mRNA 123339 124010 0.500645 + . ID=CGI_10006942; scaffold42466 TRF Tandem_Repeat 123339 124010 977 + . . scaffold42466 GLEAN mRNA 124369 124575 0.500645 + . ID=CGI_10006942; scaffold42466 TRF Tandem_Repeat 124369 124575 360 + . . scaffold42466 GLEAN mRNA 114798 115046 0.500645 + . ID=CGI_10006942; scaffold42466 WUBlastX LINE_RTE-X 114798 115046 62 + . . scaffold42466 GLEAN mRNA 114795 115088 0.500645 + . ID=CGI_10006942; scaffold42466 WUBlastX LINE_RTE-X 114795 115088 48 + . . scaffold42466 GLEAN mRNA 114642 115049 0.500645 + . ID=CGI_10006942; scaffold42466 WUBlastX LINE_RTE-X 114642 115049 23 + . . scaffold42466 GLEAN mRNA 142017 142100 0.999968 - . ID=CGI_10006943; scaffold42466 TRF Tandem_Repeat 142017 142100 84 + . . scaffold42466 GLEAN mRNA 163700 163755 1 + . ID=CGI_10006945; scaffold42466 TRF Tandem_Repeat 163700 163755 53 + . . scaffold369 GLEAN mRNA 77348 77415 0.893641 - . ID=CGI_10006952; scaffold369 TRF Tandem_Repeat 77348 77415 86 + . . scaffold369 GLEAN mRNA 83418 83451 0.893641 - . ID=CGI_10006952; scaffold369 TRF Tandem_Repeat 83418 83451 68 + . . scaffold369 GLEAN mRNA 98983 99018 0.999995 + . ID=CGI_10006953; scaffold369 TRF Tandem_Repeat 98983 99018 72 + . . scaffold369 GLEAN mRNA 106838 106946 0.811509 + . ID=CGI_10006955; scaffold369 TRF Tandem_Repeat 106838 106946 154 + . . scaffold369 GLEAN mRNA 108498 108530 0.811509 + . ID=CGI_10006955; scaffold369 TRF Tandem_Repeat 108498 108530 66 + . . scaffold369 GLEAN mRNA 128305 128404 0.392199 + . ID=CGI_10006957; scaffold369 TRF Tandem_Repeat 128305 128404 150 + . . scaffold369 GLEAN mRNA 128367 128412 0.392199 + . ID=CGI_10006957; scaffold369 TRF Tandem_Repeat 128367 128412 67 + . . scaffold369 GLEAN mRNA 149938 150074 0.70167 + . ID=CGI_10006958; scaffold369 TRF Tandem_Repeat 149938 150074 148 + . . scaffold369 GLEAN mRNA 151237 151284 0.70167 + . ID=CGI_10006958; scaffold369 TRF Tandem_Repeat 151237 151284 69 + . . scaffold369 GLEAN mRNA 162038 162084 0.70167 + . ID=CGI_10006958; scaffold369 TRF Tandem_Repeat 162038 162084 94 + . . scaffold369 GLEAN mRNA 161627 161860 0.70167 + . ID=CGI_10006958; scaffold369 WUBlastX LINE_Penelope 161627 161860 42 + . . scaffold369 GLEAN mRNA 162613 163017 0.70167 + . ID=CGI_10006958; scaffold369 WUBlastX LINE_Penelope 162613 163017 21 + . . scaffold369 GLEAN mRNA 161507 161893 0.70167 + . ID=CGI_10006958; scaffold369 WUBlastX LINE_Penelope 161507 161893 31 + . . scaffold369 GLEAN mRNA 161489 161947 0.70167 + . ID=CGI_10006958; scaffold369 WUBlastX LINE_Penelope 161489 161947 30 + . . scaffold369 GLEAN mRNA 162595 162900 0.70167 + . ID=CGI_10006958; scaffold369 WUBlastX LINE_Penelope 162595 162900 123 + . . scaffold1497 GLEAN mRNA 17476 17527 0.836332 + . ID=CGI_10006959; scaffold1497 TRF Tandem_Repeat 17476 17527 104 + . . scaffold1497 GLEAN mRNA 17642 17689 0.836332 + . ID=CGI_10006959; scaffold1497 TRF Tandem_Repeat 17642 17689 96 + . . scaffold1497 GLEAN mRNA 22418 22447 0.836332 + . ID=CGI_10006959; scaffold1497 TRF Tandem_Repeat 22418 22447 51 + . . scaffold1497 GLEAN mRNA 24907 25080 0.836332 + . ID=CGI_10006959; scaffold1497 WUBlastX DNA_Kolobok 24907 25080 53 + . . scaffold1497 GLEAN mRNA 24509 24751 0.836332 + . ID=CGI_10006959; scaffold1497 WUBlastX DNA_Kolobok 24509 24751 68 + . . scaffold1497 GLEAN mRNA 39727 40815 0.927373 + . ID=CGI_10006963; scaffold1497 WUBlastX LINE_RTE-X 39727 40815 318 - . . scaffold1497 GLEAN mRNA 40766 41113 0.927373 + . ID=CGI_10006963; scaffold1497 WUBlastX LINE_RTE-X 40766 41113 204 - . . scaffold1497 GLEAN mRNA 40967 41155 0.927373 + . ID=CGI_10006963; scaffold1497 WUBlastX LINE_RTE-BovB 40967 41155 57 - . . scaffold1497 GLEAN mRNA 110573 110614 0.600834 - . ID=CGI_10006965; scaffold1497 TRF Tandem_Repeat 110573 110614 84 + . . scaffold1497 GLEAN mRNA 134740 134784 0.478498 + . ID=CGI_10006966; scaffold1497 TRF Tandem_Repeat 134740 134784 90 + . . scaffold1497 GLEAN mRNA 136097 136140 0.478498 + . ID=CGI_10006966; scaffold1497 TRF Tandem_Repeat 136097 136140 79 + . . scaffold1497 GLEAN mRNA 134740 134784 0.988357 - . ID=CGI_10006967; scaffold1497 TRF Tandem_Repeat 134740 134784 90 + . . scaffold1497 GLEAN mRNA 136097 136140 0.988357 - . ID=CGI_10006967; scaffold1497 TRF Tandem_Repeat 136097 136140 79 + . . scaffold1497 GLEAN mRNA 155177 155757 0.749146 - . ID=CGI_10006968; scaffold1497 TRF Tandem_Repeat 155177 155757 858 + . . scaffold1497 GLEAN mRNA 153377 153457 0.749146 - . ID=CGI_10006968; scaffold1497 WUBlastX LINE_I 153377 153457 22 - . . scaffold999 GLEAN mRNA 48131 48161 0.937649 - . ID=CGI_10006971; scaffold999 TRF Tandem_Repeat 48131 48161 53 + . . scaffold999 GLEAN mRNA 49124 49149 0.937649 - . ID=CGI_10006971; scaffold999 TRF Tandem_Repeat 49124 49149 52 + . . scaffold999 GLEAN mRNA 55958 56395 0.937649 - . ID=CGI_10006971; scaffold999 TRF Tandem_Repeat 55958 56395 120 + . . scaffold999 GLEAN mRNA 55950 56397 0.937649 - . ID=CGI_10006971; scaffold999 TRF Tandem_Repeat 55950 56397 130 + . . scaffold999 GLEAN mRNA 56008 56119 0.937649 - . ID=CGI_10006971; scaffold999 TRF Tandem_Repeat 56008 56119 75 + . . scaffold999 GLEAN mRNA 55958 56349 0.937649 - . ID=CGI_10006971; scaffold999 TRF Tandem_Repeat 55958 56349 86 + . . scaffold999 GLEAN mRNA 56196 56397 0.937649 - . ID=CGI_10006971; scaffold999 TRF Tandem_Repeat 56196 56397 291 + . . scaffold999 GLEAN mRNA 56181 56395 0.937649 - . ID=CGI_10006971; scaffold999 TRF Tandem_Repeat 56181 56395 92 + . . scaffold999 GLEAN mRNA 89084 89118 0.482874 - . ID=CGI_10006972; scaffold999 TRF Tandem_Repeat 89084 89118 61 + . . scaffold999 GLEAN mRNA 89088 89129 0.482874 - . ID=CGI_10006972; scaffold999 TRF Tandem_Repeat 89088 89129 57 + . . scaffold999 GLEAN mRNA 95259 95356 0.482874 - . ID=CGI_10006972; scaffold999 TRF Tandem_Repeat 95259 95356 178 + . . scaffold999 GLEAN mRNA 98584 98802 0.482874 - . ID=CGI_10006972; scaffold999 TRF Tandem_Repeat 98584 98802 54 + . . scaffold999 GLEAN mRNA 99507 99570 0.482874 - . ID=CGI_10006972; scaffold999 TRF Tandem_Repeat 99507 99570 128 + . . scaffold999 GLEAN mRNA 112611 112662 0.391684 + . ID=CGI_10006973; scaffold999 TRF Tandem_Repeat 112611 112662 104 + . . scaffold42486 GLEAN mRNA 20823 21010 0.999999 - . ID=CGI_10006975; scaffold42486 TRF Tandem_Repeat 20823 21010 145 + . . scaffold42486 GLEAN mRNA 26255 26425 0.999999 - . ID=CGI_10006975; scaffold42486 TRF Tandem_Repeat 26255 26425 173 + . . scaffold42486 GLEAN mRNA 26255 26425 0.999999 - . ID=CGI_10006975; scaffold42486 TRF Tandem_Repeat 26255 26425 191 + . . scaffold42486 GLEAN mRNA 26425 26562 0.999999 - . ID=CGI_10006975; scaffold42486 TRF Tandem_Repeat 26425 26562 104 + . . scaffold42486 GLEAN mRNA 26752 26886 0.999999 - . ID=CGI_10006975; scaffold42486 TRF Tandem_Repeat 26752 26886 118 + . . scaffold42486 GLEAN mRNA 35221 35295 0.999999 - . ID=CGI_10006975; scaffold42486 TRF Tandem_Repeat 35221 35295 143 + . . scaffold42486 GLEAN mRNA 38347 39010 0.999999 - . ID=CGI_10006975; scaffold42486 TRF Tandem_Repeat 38347 39010 755 + . . scaffold42486 GLEAN mRNA 39238 39437 0.999999 - . ID=CGI_10006975; scaffold42486 TRF Tandem_Repeat 39238 39437 262 + . . scaffold42486 GLEAN mRNA 39239 39462 0.999999 - . ID=CGI_10006975; scaffold42486 TRF Tandem_Repeat 39239 39462 256 + . . scaffold42486 GLEAN mRNA 43668 43730 0.999999 - . ID=CGI_10006975; scaffold42486 TRF Tandem_Repeat 43668 43730 126 + . . scaffold42486 GLEAN mRNA 54989 55257 1 - . ID=CGI_10006976; scaffold42486 TRF Tandem_Repeat 54989 55257 529 + . . scaffold42486 GLEAN mRNA 84003 84184 0.996974 + . ID=CGI_10006978; scaffold42486 TRF Tandem_Repeat 84003 84184 166 + . . scaffold42486 GLEAN mRNA 85795 85836 0.996974 + . ID=CGI_10006978; scaffold42486 TRF Tandem_Repeat 85795 85836 84 + . . scaffold42486 GLEAN mRNA 94557 95702 1 - . ID=CGI_10006979; scaffold42486 TRF Tandem_Repeat 94557 95702 1021 + . . scaffold42486 GLEAN mRNA 94557 95888 1 - . ID=CGI_10006979; scaffold42486 TRF Tandem_Repeat 94557 95888 1015 + . . scaffold42486 GLEAN mRNA 139368 139409 0.777025 - . ID=CGI_10006981; scaffold42486 TRF Tandem_Repeat 139368 139409 84 + . . scaffold42486 GLEAN mRNA 139490 139517 0.777025 - . ID=CGI_10006981; scaffold42486 TRF Tandem_Repeat 139490 139517 56 + . . scaffold42486 GLEAN mRNA 139593 139624 0.777025 - . ID=CGI_10006981; scaffold42486 TRF Tandem_Repeat 139593 139624 55 + . . scaffold42486 GLEAN mRNA 148449 149078 0.998251 - . ID=CGI_10006982; scaffold42486 WUBlastX DNA_TcMar-Tc1 148449 149078 228 + . . scaffold42486 GLEAN mRNA 149068 149301 0.998251 - . ID=CGI_10006982; scaffold42486 WUBlastX DNA_TcMar-Tc1 149068 149301 165 + . . scaffold42486 GLEAN mRNA 153670 153948 0.998251 - . ID=CGI_10006982; scaffold42486 WUBlastX DNA_Academ 153670 153948 44 - . . scaffold42486 GLEAN mRNA 148336 148434 0.998251 - . ID=CGI_10006982; scaffold42486 WUBlastX DNA_TcMar-Tc1 148336 148434 29 + . . scaffold401 GLEAN mRNA 9882 10649 0.998672 + . ID=CGI_10006983; scaffold401 WUBlastX DNA_TcMar-Tc1 9882 10649 83 + . . scaffold401 GLEAN mRNA 10503 10676 0.998672 + . ID=CGI_10006983; scaffold401 WUBlastX DNA_TcMar-Tc1 10503 10676 60 + . . scaffold401 GLEAN mRNA 64283 64310 0.624608 + . ID=CGI_10006988; scaffold401 TRF Tandem_Repeat 64283 64310 56 + . . scaffold401 GLEAN mRNA 64437 64502 0.624608 + . ID=CGI_10006988; scaffold401 TRF Tandem_Repeat 64437 64502 123 + . . scaffold401 GLEAN mRNA 143932 143988 0.958767 + . ID=CGI_10006992; scaffold401 TRF Tandem_Repeat 143932 143988 114 + . . scaffold401 GLEAN mRNA 156135 156413 0.728444 + . ID=CGI_10006994; scaffold401 WUBlastX LINE_RTE-X 156135 156413 99 - . . scaffold401 GLEAN mRNA 155825 156112 0.728444 + . ID=CGI_10006994; scaffold401 WUBlastX LINE_RTE-BovB 155825 156112 77 - . . scaffold401 GLEAN mRNA 156382 156465 0.728444 + . ID=CGI_10006994; scaffold401 WUBlastX LINE_RTE-X 156382 156465 35 - . . scaffold401 GLEAN mRNA 156382 156531 0.728444 + . ID=CGI_10006994; scaffold401 WUBlastX LINE_RTE-X 156382 156531 33 - . . scaffold401 GLEAN mRNA 156159 156374 0.728444 + . ID=CGI_10006994; scaffold401 WUBlastX LINE_RTE-X 156159 156374 102 - . . scaffold575 GLEAN mRNA 15487 15702 0.920529 + . ID=CGI_10006995; scaffold575 TRF Tandem_Repeat 15487 15702 267 + . . scaffold575 GLEAN mRNA 15678 15832 0.920529 + . ID=CGI_10006995; scaffold575 TRF Tandem_Repeat 15678 15832 81 + . . scaffold575 GLEAN mRNA 15487 15786 0.920529 + . ID=CGI_10006995; scaffold575 TRF Tandem_Repeat 15487 15786 98 + . . scaffold575 GLEAN mRNA 15888 16026 0.920529 + . ID=CGI_10006995; scaffold575 TRF Tandem_Repeat 15888 16026 197 + . . scaffold575 GLEAN mRNA 43420 43448 0.990447 - . ID=CGI_10006996; scaffold575 TRF Tandem_Repeat 43420 43448 51 + . . scaffold575 GLEAN mRNA 114263 114311 0.999676 - . ID=CGI_10006998; scaffold575 TRF Tandem_Repeat 114263 114311 98 + . . scaffold575 GLEAN mRNA 133482 133526 0.998259 + . ID=CGI_10007000; scaffold575 TRF Tandem_Repeat 133482 133526 90 + . . scaffold575 GLEAN mRNA 151729 151773 0.486824 - . ID=CGI_10007002; scaffold575 TRF Tandem_Repeat 151729 151773 81 + . . scaffold575 GLEAN mRNA 153831 153871 0.486824 - . ID=CGI_10007002; scaffold575 TRF Tandem_Repeat 153831 153871 82 + . . scaffold575 GLEAN mRNA 158866 158928 0.486824 - . ID=CGI_10007002; scaffold575 WUBlastX DNA_Sola 158866 158928 26 - . . scaffold575 GLEAN mRNA 159430 159567 0.486824 - . ID=CGI_10007002; scaffold575 WUBlastX DNA_Sola 159430 159567 32 - . . scaffold575 GLEAN mRNA 158464 158607 0.486824 - . ID=CGI_10007002; scaffold575 WUBlastX DNA_Sola 158464 158607 49 - . . scaffold575 GLEAN mRNA 159123 159185 0.486824 - . ID=CGI_10007002; scaffold575 WUBlastX DNA_Sola 159123 159185 25 - . . scaffold575 GLEAN mRNA 159108 159179 0.486824 - . ID=CGI_10007002; scaffold575 WUBlastX DNA_Sola 159108 159179 25 - . . scaffold575 GLEAN mRNA 159454 159531 0.486824 - . ID=CGI_10007002; scaffold575 WUBlastX DNA_Sola 159454 159531 41 - . . scaffold42490 GLEAN mRNA 90255 90286 0.999675 - . ID=CGI_10007004; scaffold42490 TRF Tandem_Repeat 90255 90286 55 + . . scaffold42490 GLEAN mRNA 90315 90364 0.999675 - . ID=CGI_10007004; scaffold42490 TRF Tandem_Repeat 90315 90364 66 + . . scaffold42490 GLEAN mRNA 126951 127000 0.999661 + . ID=CGI_10007005; scaffold42490 TRF Tandem_Repeat 126951 127000 100 + . . scaffold827 GLEAN mRNA 49030 49060 0.615967 - . ID=CGI_10007009; scaffold827 WUBlastX LINE_I 49004 49060 21 - . . scaffold827 GLEAN mRNA 73671 73719 0.73088 - . ID=CGI_10007011; scaffold827 TRF Tandem_Repeat 73671 73719 64 + . . scaffold827 GLEAN mRNA 73676 73718 0.73088 - . ID=CGI_10007011; scaffold827 TRF Tandem_Repeat 73676 73718 50 + . . scaffold827 GLEAN mRNA 109961 110010 0.999674 + . ID=CGI_10007012; scaffold827 TRF Tandem_Repeat 109961 110010 91 + . . scaffold827 GLEAN mRNA 111518 111561 0.999674 + . ID=CGI_10007012; scaffold827 TRF Tandem_Repeat 111518 111561 70 + . . scaffold827 GLEAN mRNA 149607 150395 0.778909 - . ID=CGI_10007013; scaffold827 TRF Tandem_Repeat 149607 150395 1106 + . . scaffold1828 GLEAN mRNA 60957 61098 0.999998 + . ID=CGI_10007019; scaffold1828 TRF Tandem_Repeat 60957 61098 131 + . . scaffold1828 GLEAN mRNA 67080 67150 0.999998 + . ID=CGI_10007019; scaffold1828 TRF Tandem_Repeat 67080 67150 142 + . . scaffold1828 GLEAN mRNA 69172 69235 0.999998 + . ID=CGI_10007019; scaffold1828 TRF Tandem_Repeat 69172 69235 96 + . . scaffold1828 GLEAN mRNA 69785 69840 0.999998 + . ID=CGI_10007019; scaffold1828 TRF Tandem_Repeat 69785 69840 112 + . . scaffold1828 GLEAN mRNA 74608 74806 0.999998 + . ID=CGI_10007019; scaffold1828 TRF Tandem_Repeat 74608 74806 366 + . . scaffold1828 GLEAN mRNA 75063 75113 0.999998 + . ID=CGI_10007019; scaffold1828 TRF Tandem_Repeat 75063 75113 75 + . . scaffold1828 GLEAN mRNA 107083 107134 0.565552 - . ID=CGI_10007021; scaffold1828 TRF Tandem_Repeat 107083 107134 77 + . . scaffold1828 GLEAN mRNA 116043 116101 0.565552 - . ID=CGI_10007021; scaffold1828 TRF Tandem_Repeat 116043 116101 109 + . . scaffold1828 GLEAN mRNA 119894 119943 0.565552 - . ID=CGI_10007021; scaffold1828 TRF Tandem_Repeat 119894 119943 100 + . . scaffold1828 GLEAN mRNA 123466 123509 0.565552 - . ID=CGI_10007021; scaffold1828 TRF Tandem_Repeat 123466 123509 88 + . . scaffold1828 GLEAN mRNA 123532 123581 0.565552 - . ID=CGI_10007021; scaffold1828 TRF Tandem_Repeat 123532 123581 100 + . . scaffold1828 GLEAN mRNA 130466 130536 0.565552 - . ID=CGI_10007021; scaffold1828 TRF Tandem_Repeat 130466 130536 69 + . . scaffold1828 GLEAN mRNA 135163 135213 0.565552 - . ID=CGI_10007021; scaffold1828 TRF Tandem_Repeat 135163 135213 84 + . . scaffold1828 GLEAN mRNA 137520 137572 0.565552 - . ID=CGI_10007021; scaffold1828 TRF Tandem_Repeat 137520 137572 97 + . . scaffold42508 GLEAN mRNA 16738 16797 1 - . ID=CGI_10007022; scaffold42508 TRF Tandem_Repeat 16738 16797 120 + . . scaffold42508 GLEAN mRNA 55308 56509 0.924244 - . ID=CGI_10007026; scaffold42508 TRF Tandem_Repeat 55308 56509 1839 + . . scaffold42508 GLEAN mRNA 68988 69043 0.999922 + . ID=CGI_10007027; scaffold42508 TRF Tandem_Repeat 68988 69043 112 + . . scaffold42508 GLEAN mRNA 73201 73250 0.999922 + . ID=CGI_10007027; scaffold42508 TRF Tandem_Repeat 73201 73250 100 + . . scaffold42508 GLEAN mRNA 104764 104837 0.993544 - . ID=CGI_10007030; scaffold42508 TRF Tandem_Repeat 104764 104837 148 + . . scaffold42508 GLEAN mRNA 134329 134508 0.99201 - . ID=CGI_10007033; scaffold42508 WUBlastX LTR_Copia 134329 134508 87 + . . scaffold42508 GLEAN mRNA 135483 135812 0.99201 - . ID=CGI_10007033; scaffold42508 WUBlastX LTR_Copia 135483 135812 169 + . . scaffold42508 GLEAN mRNA 152905 152980 0.176732 + . ID=CGI_10007034; scaffold42508 TRF Tandem_Repeat 152905 152980 152 + . . scaffold42508 GLEAN mRNA 154197 154309 0.176732 + . ID=CGI_10007034; scaffold42508 TRF Tandem_Repeat 154197 154309 111 + . . scaffold1399 GLEAN mRNA 22231 22393 0.996608 + . ID=CGI_10007047; scaffold1399 TRF Tandem_Repeat 22231 22393 125 + . . scaffold1399 GLEAN mRNA 29035 29088 0.996608 + . ID=CGI_10007047; scaffold1399 TRF Tandem_Repeat 29035 29088 65 + . . scaffold1399 GLEAN mRNA 33517 33738 0.996608 + . ID=CGI_10007047; scaffold1399 WUBlastX LINE_L1-Tx1 33517 33738 25 - . . scaffold1399 GLEAN mRNA 33397 33723 0.996608 + . ID=CGI_10007047; scaffold1399 WUBlastX LINE_L1 33397 33723 24 - . . scaffold1399 GLEAN mRNA 33929 34096 0.996608 + . ID=CGI_10007047; scaffold1399 WUBlastX LINE_L1 33929 34096 31 - . . scaffold1399 GLEAN mRNA 47507 47597 0.575752 + . ID=CGI_10007048; scaffold1399 TRF Tandem_Repeat 47507 47597 182 + . . scaffold1399 GLEAN mRNA 56157 56182 0.575752 + . ID=CGI_10007048; scaffold1399 TRF Tandem_Repeat 56157 56182 52 + . . scaffold1399 GLEAN mRNA 67046 67426 0.728009 + . ID=CGI_10007049; scaffold1399 TRF Tandem_Repeat 67046 67426 509 + . . scaffold1399 GLEAN mRNA 67061 67490 0.728009 + . ID=CGI_10007049; scaffold1399 TRF Tandem_Repeat 67061 67490 331 + . . scaffold1399 GLEAN mRNA 67068 67490 0.728009 + . ID=CGI_10007049; scaffold1399 TRF Tandem_Repeat 67068 67490 402 + . . scaffold1399 GLEAN mRNA 68167 68412 0.728009 + . ID=CGI_10007049; scaffold1399 TRF Tandem_Repeat 68167 68412 361 + . . scaffold1399 GLEAN mRNA 74857 76104 0.728009 + . ID=CGI_10007049; scaffold1399 TRF Tandem_Repeat 74857 76104 1898 + . . scaffold1399 GLEAN mRNA 101779 101824 0.470575 + . ID=CGI_10007050; scaffold1399 TRF Tandem_Repeat 101779 101824 92 + . . scaffold1399 GLEAN mRNA 105779 107504 0.470575 + . ID=CGI_10007050; scaffold1399 TRF Tandem_Repeat 105779 107504 2416 + . . scaffold1399 GLEAN mRNA 105779 107504 0.470575 + . ID=CGI_10007050; scaffold1399 TRF Tandem_Repeat 105779 107504 2377 + . . scaffold1399 GLEAN mRNA 109416 109946 0.470575 + . ID=CGI_10007050; scaffold1399 TRF Tandem_Repeat 109416 109946 794 + . . scaffold1399 GLEAN mRNA 111135 111175 0.470575 + . ID=CGI_10007050; scaffold1399 TRF Tandem_Repeat 111135 111175 82 + . . scaffold1399 GLEAN mRNA 117515 118438 0.470575 + . ID=CGI_10007050; scaffold1399 WUBlastX LTR_DIRS 117515 118438 596 - . . scaffold1399 GLEAN mRNA 119512 120546 0.470575 + . ID=CGI_10007050; scaffold1399 WUBlastX LTR_Gypsy 119512 120546 87 - . . scaffold1399 GLEAN mRNA 118333 120354 0.470575 + . ID=CGI_10007050; scaffold1399 WUBlastX LTR_DIRS 118333 120354 1398 - . . scaffold1399 GLEAN mRNA 120730 121098 0.470575 + . ID=CGI_10007050; scaffold1399 WUBlastX LTR_DIRS 120730 121098 84 - . . scaffold1399 GLEAN mRNA 148857 148891 0.65061 + . ID=CGI_10007057; scaffold1399 TRF Tandem_Repeat 148857 148891 70 + . . scaffold1399 GLEAN mRNA 151473 151508 0.65061 + . ID=CGI_10007057; scaffold1399 TRF Tandem_Repeat 151473 151508 72 + . . scaffold1399 GLEAN mRNA 152326 153121 0.65061 + . ID=CGI_10007057; scaffold1399 TRF Tandem_Repeat 152326 153121 1177 + . . scaffold1399 GLEAN mRNA 158737 158776 0.65061 + . ID=CGI_10007057; scaffold1399 TRF Tandem_Repeat 158737 158776 80 + . . scaffold1758 GLEAN mRNA 13264 13316 0.999955 + . ID=CGI_10007060; scaffold1758 TRF Tandem_Repeat 13264 13316 106 + . . scaffold1758 GLEAN mRNA 18497 18802 0.999955 + . ID=CGI_10007060; scaffold1758 TRF Tandem_Repeat 18497 18802 167 + . . scaffold1758 GLEAN mRNA 19362 19432 0.999955 + . ID=CGI_10007060; scaffold1758 TRF Tandem_Repeat 19362 19432 70 + . . scaffold1758 GLEAN mRNA 70617 70652 0.748948 + . ID=CGI_10007061; scaffold1758 TRF Tandem_Repeat 70617 70652 72 + . . scaffold1758 GLEAN mRNA 70654 70706 0.748948 + . ID=CGI_10007061; scaffold1758 TRF Tandem_Repeat 70654 70706 61 + . . scaffold1758 GLEAN mRNA 70617 70678 0.748948 + . ID=CGI_10007061; scaffold1758 TRF Tandem_Repeat 70617 70678 56 + . . scaffold1758 GLEAN mRNA 87700 87746 0.748948 + . ID=CGI_10007061; scaffold1758 TRF Tandem_Repeat 87700 88033 335 + . . scaffold1758 GLEAN mRNA 113004 113053 0.999352 - . ID=CGI_10007062; scaffold1758 TRF Tandem_Repeat 113004 113053 55 + . . scaffold1758 GLEAN mRNA 125338 125466 0.791435 + . ID=CGI_10007063; scaffold1758 WUBlastX LTR_Gypsy 125338 125466 24 + . . scaffold242 GLEAN mRNA 75832 76443 0.771995 + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 75754 76443 35 + . . scaffold242 GLEAN mRNA 76722 77186 0.771995 + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 76722 77186 194 + . . scaffold242 GLEAN mRNA 76093 76755 0.771995 + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 76093 76755 150 + . . scaffold242 GLEAN mRNA 76737 77306 0.771995 + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 76737 77306 48 + . . scaffold242 GLEAN mRNA 78145 78513 0.771995 + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 78145 78513 237 + . . scaffold242 GLEAN mRNA 75970 76335 0.771995 + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 75970 76335 84 + . . scaffold242 GLEAN mRNA 79099 80460 0.771995 + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 79099 80460 314 + . . scaffold242 GLEAN mRNA 76722 77108 0.771995 + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 76722 77108 203 + . . scaffold242 GLEAN mRNA 79405 80487 0.771995 + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 79405 80487 992 + . . scaffold242 GLEAN mRNA 78512 79093 0.771995 + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 78512 79093 397 + . . scaffold242 GLEAN mRNA 78064 78513 0.771995 + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 78064 78513 64 + . . scaffold242 GLEAN mRNA 121521 121565 0.999674 - . ID=CGI_10007085; scaffold242 TRF Tandem_Repeat 121521 121565 90 + . . scaffold242 GLEAN mRNA 128787 128966 0.931496 + . ID=CGI_10007086; scaffold242 WUBlastX LTR_Gypsy 128787 128966 33 + . . scaffold242 GLEAN mRNA 150987 151164 0.532389 + . ID=CGI_10007087; scaffold242 TRF Tandem_Repeat 150987 151164 230 + . . scaffold242 GLEAN mRNA 164615 165262 0.999994 + . ID=CGI_10007088; scaffold242 TRF Tandem_Repeat 164615 165262 772 + . . scaffold174 GLEAN mRNA 76211 76266 0.999949 + . ID=CGI_10007097; scaffold174 TRF Tandem_Repeat 76211 76266 112 + . . scaffold174 GLEAN mRNA 76858 76891 0.999949 + . ID=CGI_10007097; scaffold174 TRF Tandem_Repeat 76858 76891 52 + . . scaffold174 GLEAN mRNA 80014 80061 0.999949 + . ID=CGI_10007097; scaffold174 TRF Tandem_Repeat 80014 80061 96 + . . scaffold174 GLEAN mRNA 112970 113032 0.999745 + . ID=CGI_10007098; scaffold174 TRF Tandem_Repeat 112970 113032 126 + . . scaffold42516 GLEAN mRNA 17654 17686 0.649911 + . ID=CGI_10007103; scaffold42516 TRF Tandem_Repeat 17654 17686 66 + . . scaffold42516 GLEAN mRNA 71914 72471 0.495617 - . ID=CGI_10007107; scaffold42516 WUBlastX DNA_hAT 71914 72471 236 - . . scaffold42516 GLEAN mRNA 89148 89185 1 + . ID=CGI_10007109; scaffold42516 TRF Tandem_Repeat 89148 89185 76 + . . scaffold42516 GLEAN mRNA 100559 101478 1 + . ID=CGI_10007109; scaffold42516 TRF Tandem_Repeat 100559 101478 1373 + . . scaffold42516 GLEAN mRNA 130024 130388 0.981254 + . ID=CGI_10007112; scaffold42516 TRF Tandem_Repeat 130024 130388 447 + . . scaffold42516 GLEAN mRNA 131979 132290 0.981254 + . ID=CGI_10007112; scaffold42516 TRF Tandem_Repeat 131979 132290 404 + . . scaffold1001 GLEAN mRNA 11372 11531 0.672255 - . ID=CGI_10007116; scaffold1001 TRF Tandem_Repeat 11372 11531 205 + . . scaffold1001 GLEAN mRNA 12110 12846 0.672255 - . ID=CGI_10007116; scaffold1001 TRF Tandem_Repeat 12110 12846 1028 + . . scaffold1001 GLEAN mRNA 16768 16799 0.672255 - . ID=CGI_10007116; scaffold1001 TRF Tandem_Repeat 16768 16799 57 + . . scaffold1001 GLEAN mRNA 25884 26021 0.672255 - . ID=CGI_10007116; scaffold1001 WUBlastX LINE_CR1 25884 26021 26 + . . scaffold1001 GLEAN mRNA 26698 27627 0.672255 - . ID=CGI_10007116; scaffold1001 WUBlastX LINE_L2 26698 27627 239 + . . scaffold1001 GLEAN mRNA 26515 27636 0.672255 - . ID=CGI_10007116; scaffold1001 WUBlastX LINE_L2 26515 27636 131 + . . scaffold1001 GLEAN mRNA 50360 50412 0.488754 - . ID=CGI_10007117; scaffold1001 TRF Tandem_Repeat 50360 50412 54 + . . scaffold1001 GLEAN mRNA 52029 52158 0.488754 - . ID=CGI_10007117; scaffold1001 TRF Tandem_Repeat 52029 52158 93 + . . scaffold1001 GLEAN mRNA 52074 52220 0.488754 - . ID=CGI_10007117; scaffold1001 TRF Tandem_Repeat 52074 52220 73 + . . scaffold1001 GLEAN mRNA 56542 56625 0.488754 - . ID=CGI_10007117; scaffold1001 TRF Tandem_Repeat 56542 56625 123 + . . scaffold1001 GLEAN mRNA 57057 57462 0.488754 - . ID=CGI_10007117; scaffold1001 TRF Tandem_Repeat 57057 57462 607 + . . scaffold1001 GLEAN mRNA 71449 71499 0.998017 - . ID=CGI_10007118; scaffold1001 TRF Tandem_Repeat 71449 71499 102 + . . scaffold1001 GLEAN mRNA 112140 112680 0.433806 + . ID=CGI_10007119; scaffold1001 TRF Tandem_Repeat 112140 112680 682 + . . scaffold1001 GLEAN mRNA 112140 112680 0.433806 + . ID=CGI_10007119; scaffold1001 TRF Tandem_Repeat 112140 112680 657 + . . scaffold1001 GLEAN mRNA 115143 115865 0.433806 + . ID=CGI_10007119; scaffold1001 TRF Tandem_Repeat 115143 115865 959 + . . scaffold1001 GLEAN mRNA 129944 131035 0.433806 + . ID=CGI_10007119; scaffold1001 TRF Tandem_Repeat 129944 131035 1625 + . . scaffold1001 GLEAN mRNA 129058 129174 0.433806 + . ID=CGI_10007119; scaffold1001 WUBlastX LINE_RTE-X 129058 129174 29 - . . scaffold1001 GLEAN mRNA 129275 129733 0.433806 + . ID=CGI_10007119; scaffold1001 WUBlastX LINE_RTE-X 129275 129733 193 - . . scaffold1001 GLEAN mRNA 129242 129790 0.433806 + . ID=CGI_10007119; scaffold1001 WUBlastX LINE_RTE-X 129242 129790 139 - . . scaffold1001 GLEAN mRNA 129079 129180 0.433806 + . ID=CGI_10007119; scaffold1001 WUBlastX LINE_RTE-X 129079 129180 40 - . . scaffold1001 GLEAN mRNA 136467 136500 0.433806 + . ID=CGI_10007119; scaffold1001 TRF Tandem_Repeat 136467 136500 52 + . . scaffold1001 GLEAN mRNA 136670 137356 0.433806 + . ID=CGI_10007119; scaffold1001 TRF Tandem_Repeat 136670 137356 866 + . . scaffold222 GLEAN mRNA 31801 32340 0.659955 + . ID=CGI_10007121; scaffold222 WUBlastX DNA_hAT 31801 32340 90 + . . scaffold222 GLEAN mRNA 59214 59269 0.850121 + . ID=CGI_10007122; scaffold222 TRF Tandem_Repeat 59214 59269 94 + . . scaffold222 GLEAN mRNA 61601 61634 0.850121 + . ID=CGI_10007122; scaffold222 TRF Tandem_Repeat 61601 61634 50 + . . scaffold222 GLEAN mRNA 140062 140090 0.626444 - . ID=CGI_10007124; scaffold222 TRF Tandem_Repeat 140062 140090 58 + . . scaffold222 GLEAN mRNA 137985 139706 0.626444 - . ID=CGI_10007124; scaffold222 WUBlastX LINE_L2 137985 139706 1199 - . . scaffold222 GLEAN mRNA 139578 139772 0.626444 - . ID=CGI_10007124; scaffold222 WUBlastX LINE_RTE-BovB 139578 139772 25 - . . scaffold222 GLEAN mRNA 137512 137652 0.626444 - . ID=CGI_10007124; scaffold222 WUBlastX LINE_L2 137512 137652 26 - . . scaffold222 GLEAN mRNA 140198 140767 0.626444 - . ID=CGI_10007124; scaffold222 WUBlastX DNA_Crypton 140198 140767 75 - . . scaffold1802 GLEAN mRNA 22722 22753 0.931729 + . ID=CGI_10007147; scaffold1802 TRF Tandem_Repeat 22722 22753 57 + . . scaffold1802 GLEAN mRNA 37460 37501 0.931729 + . ID=CGI_10007147; scaffold1802 TRF Tandem_Repeat 37460 37501 84 + . . scaffold1802 GLEAN mRNA 59959 59961 0.641801 + . ID=CGI_10007148; scaffold1802 TRF Tandem_Repeat 59959 60758 1255 + . . scaffold1802 GLEAN mRNA 80256 80393 0.999761 + . ID=CGI_10007150; scaffold1802 WUBlastX LINE_RTE-RTE 80256 80393 24 + . . scaffold1802 GLEAN mRNA 80609 80707 0.999761 + . ID=CGI_10007150; scaffold1802 WUBlastX LINE_L1-Tx1 80609 80707 24 + . . scaffold1802 GLEAN mRNA 142755 142802 0.996452 + . ID=CGI_10007154; scaffold1802 TRF Tandem_Repeat 142755 142802 96 + . . scaffold1802 GLEAN mRNA 158182 158289 1 + . ID=CGI_10007156; scaffold1802 TRF Tandem_Repeat 158182 158289 128 + . . scaffold1802 GLEAN mRNA 159300 159347 1 + . ID=CGI_10007156; scaffold1802 TRF Tandem_Repeat 159300 159347 87 + . . scaffold1802 GLEAN mRNA 160873 160921 1 + . ID=CGI_10007156; scaffold1802 TRF Tandem_Repeat 160873 160921 98 + . . scaffold42530 GLEAN mRNA 20207 20246 0.832603 - . ID=CGI_10007158; scaffold42530 TRF Tandem_Repeat 20207 20246 71 + . . scaffold42530 GLEAN mRNA 40786 40956 0.518164 - . ID=CGI_10007160; scaffold42530 WUBlastX LTR_Pao 40786 40956 37 - . . scaffold42530 GLEAN mRNA 48526 48564 0.966018 + . ID=CGI_10007161; scaffold42530 TRF Tandem_Repeat 48526 48564 78 + . . scaffold42530 GLEAN mRNA 47785 47979 0.966018 + . ID=CGI_10007161; scaffold42530 WUBlastX LINE_L2 47785 47979 86 + . . scaffold42530 GLEAN mRNA 46387 46458 0.966018 + . ID=CGI_10007161; scaffold42530 WUBlastX LINE_L2 46387 46458 27 + . . scaffold42530 GLEAN mRNA 46393 46533 0.966018 + . ID=CGI_10007161; scaffold42530 WUBlastX LINE_L2 46393 46533 22 + . . scaffold42530 GLEAN mRNA 46545 47180 0.966018 + . ID=CGI_10007161; scaffold42530 WUBlastX LINE_L2 46545 47180 153 + . . scaffold42530 GLEAN mRNA 46647 47783 0.966018 + . ID=CGI_10007161; scaffold42530 WUBlastX LINE_L2 46647 47783 426 + . . scaffold42530 GLEAN mRNA 156852 156985 1 - . ID=CGI_10007167; scaffold42530 TRF Tandem_Repeat 156852 156985 89 + . . scaffold42530 GLEAN mRNA 166227 166286 1 - . ID=CGI_10007168; scaffold42530 TRF Tandem_Repeat 166227 166286 120 + . . scaffold1264 GLEAN mRNA 37249 37773 0.612594 + . ID=CGI_10007170; scaffold1264 WUBlastX LINE_L1 37249 37773 38 + . . scaffold1264 GLEAN mRNA 37129 37626 0.612594 + . ID=CGI_10007170; scaffold1264 WUBlastX LINE_L1-Tx1 37129 37626 42 + . . scaffold1264 GLEAN mRNA 53155 53194 0.959625 + . ID=CGI_10007171; scaffold1264 TRF Tandem_Repeat 53155 53194 53 + . . scaffold1264 GLEAN mRNA 84433 84481 0.354771 - . ID=CGI_10007172; scaffold1264 TRF Tandem_Repeat 84433 84481 98 + . . scaffold1264 GLEAN mRNA 91754 91806 0.354771 - . ID=CGI_10007172; scaffold1264 TRF Tandem_Repeat 91754 91806 106 + . . scaffold1264 GLEAN mRNA 110069 110129 0.592998 + . ID=CGI_10007173; scaffold1264 TRF Tandem_Repeat 110069 110129 50 + . . scaffold1264 GLEAN mRNA 110201 110264 0.592998 + . ID=CGI_10007173; scaffold1264 TRF Tandem_Repeat 110201 110264 58 + . . scaffold1264 GLEAN mRNA 110201 110287 0.592998 + . ID=CGI_10007173; scaffold1264 TRF Tandem_Repeat 110201 110287 77 + . . scaffold1264 GLEAN mRNA 111838 111872 0.592998 + . ID=CGI_10007173; scaffold1264 TRF Tandem_Repeat 111838 111872 70 + . . scaffold1264 GLEAN mRNA 112060 112132 0.592998 + . ID=CGI_10007173; scaffold1264 TRF Tandem_Repeat 112060 112132 137 + . . scaffold1264 GLEAN mRNA 112858 112946 0.592998 + . ID=CGI_10007173; scaffold1264 TRF Tandem_Repeat 112858 112946 81 + . . scaffold1264 GLEAN mRNA 113019 113079 0.592998 + . ID=CGI_10007173; scaffold1264 TRF Tandem_Repeat 113019 113079 50 + . . scaffold1264 GLEAN mRNA 110069 110129 0.702372 - . ID=CGI_10007174; scaffold1264 TRF Tandem_Repeat 110069 110129 50 + . . scaffold1264 GLEAN mRNA 110201 110264 0.702372 - . ID=CGI_10007174; scaffold1264 TRF Tandem_Repeat 110201 110264 58 + . . scaffold1264 GLEAN mRNA 110201 110287 0.702372 - . ID=CGI_10007174; scaffold1264 TRF Tandem_Repeat 110201 110287 77 + . . scaffold1264 GLEAN mRNA 111838 111872 0.702372 - . ID=CGI_10007174; scaffold1264 TRF Tandem_Repeat 111838 111872 70 + . . scaffold1264 GLEAN mRNA 112060 112132 0.702372 - . ID=CGI_10007174; scaffold1264 TRF Tandem_Repeat 112060 112132 137 + . . scaffold1264 GLEAN mRNA 112858 112946 0.702372 - . ID=CGI_10007174; scaffold1264 TRF Tandem_Repeat 112858 112946 81 + . . scaffold1264 GLEAN mRNA 113019 113079 0.702372 - . ID=CGI_10007174; scaffold1264 TRF Tandem_Repeat 113019 113079 50 + . . scaffold1264 GLEAN mRNA 140064 140116 0.5 - . ID=CGI_10007176; scaffold1264 TRF Tandem_Repeat 140064 140116 97 + . . scaffold1264 GLEAN mRNA 137531 139060 0.5 - . ID=CGI_10007176; scaffold1264 WUBlastX LINE_L1-Tx1 137531 139060 328 + . . scaffold1264 GLEAN mRNA 136179 137522 0.5 - . ID=CGI_10007176; scaffold1264 WUBlastX LINE_L1 136179 137522 839 + . . scaffold1264 GLEAN mRNA 135433 136242 0.5 - . ID=CGI_10007176; scaffold1264 WUBlastX LINE_L1 135433 136242 326 + . . scaffold1264 GLEAN mRNA 147879 147939 0.5 - . ID=CGI_10007176; scaffold1264 TRF Tandem_Repeat 147879 147939 122 + . . scaffold1264 GLEAN mRNA 149477 149534 0.5 - . ID=CGI_10007176; scaffold1264 TRF Tandem_Repeat 149477 149534 107 + . . scaffold1264 GLEAN mRNA 147879 147939 1 + . ID=CGI_10007177; scaffold1264 TRF Tandem_Repeat 147879 147939 122 + . . scaffold1264 GLEAN mRNA 149477 149534 1 + . ID=CGI_10007177; scaffold1264 TRF Tandem_Repeat 149477 149534 107 + . . scaffold42566 GLEAN mRNA 17338 17396 0.979438 + . ID=CGI_10007178; scaffold42566 TRF Tandem_Repeat 17338 17396 109 + . . scaffold1872 GLEAN mRNA 36109 36177 0.778075 + . ID=CGI_10007181; scaffold1872 TRF Tandem_Repeat 36109 36177 56 + . . scaffold1872 GLEAN mRNA 41770 42007 0.778075 + . ID=CGI_10007181; scaffold1872 TRF Tandem_Repeat 41770 42007 146 + . . scaffold1872 GLEAN mRNA 51968 52305 0.997888 - . ID=CGI_10007182; scaffold1872 TRF Tandem_Repeat 51968 52305 257 + . . scaffold1872 GLEAN mRNA 52053 52462 0.997888 - . ID=CGI_10007182; scaffold1872 TRF Tandem_Repeat 52053 52462 222 + . . scaffold1872 GLEAN mRNA 85425 86331 0.586599 + . ID=CGI_10007184; scaffold1872 TRF Tandem_Repeat 85425 86331 940 + . . scaffold1872 GLEAN mRNA 87627 87666 0.586599 + . ID=CGI_10007184; scaffold1872 TRF Tandem_Repeat 87627 87666 62 + . . scaffold1872 GLEAN mRNA 89560 89857 0.586599 + . ID=CGI_10007184; scaffold1872 TRF Tandem_Repeat 89560 89857 207 + . . scaffold1872 GLEAN mRNA 89651 89867 0.586599 + . ID=CGI_10007184; scaffold1872 TRF Tandem_Repeat 89651 89867 226 + . . scaffold1872 GLEAN mRNA 92139 92189 0.586599 + . ID=CGI_10007184; scaffold1872 TRF Tandem_Repeat 92139 92189 102 + . . scaffold1872 GLEAN mRNA 97596 98108 0.586599 + . ID=CGI_10007184; scaffold1872 WUBlastX LINE_RTE-X 97596 98108 41 - . . scaffold1872 GLEAN mRNA 97629 97961 0.586599 + . ID=CGI_10007184; scaffold1872 WUBlastX LINE_RTE-X 97629 97961 99 - . . scaffold1872 GLEAN mRNA 101176 101206 0.586599 + . ID=CGI_10007184; scaffold1872 TRF Tandem_Repeat 101176 101206 62 + . . scaffold1872 GLEAN mRNA 109485 109927 0.586599 + . ID=CGI_10007184; scaffold1872 TRF Tandem_Repeat 109485 109927 583 + . . scaffold1872 GLEAN mRNA 109485 109927 0.586599 + . ID=CGI_10007184; scaffold1872 TRF Tandem_Repeat 109485 109927 590 + . . scaffold1872 GLEAN mRNA 113121 113232 0.586599 + . ID=CGI_10007184; scaffold1872 TRF Tandem_Repeat 113121 113232 122 + . . scaffold1872 GLEAN mRNA 113121 113232 0.586599 + . ID=CGI_10007184; scaffold1872 TRF Tandem_Repeat 113121 113232 142 + . . scaffold1872 GLEAN mRNA 117786 117823 0.651133 - . ID=CGI_10007185; scaffold1872 TRF Tandem_Repeat 117786 117823 76 + . . scaffold1872 GLEAN mRNA 134956 134994 0.991823 - . ID=CGI_10007186; scaffold1872 TRF Tandem_Repeat 134956 134994 78 + . . scaffold1872 GLEAN mRNA 160571 160644 0.999297 + . ID=CGI_10007188; scaffold1872 TRF Tandem_Repeat 160571 160644 121 + . . scaffold1872 GLEAN mRNA 162515 162629 0.999297 + . ID=CGI_10007188; scaffold1872 TRF Tandem_Repeat 162515 162629 69 + . . scaffold42556 GLEAN mRNA 44605 44649 0.999478 + . ID=CGI_10007190; scaffold42556 TRF Tandem_Repeat 44605 44649 90 + . . scaffold42556 GLEAN mRNA 58095 58240 0.868889 + . ID=CGI_10007191; scaffold42556 TRF Tandem_Repeat 58095 58240 93 + . . scaffold42556 GLEAN mRNA 58050 58229 0.868889 + . ID=CGI_10007191; scaffold42556 TRF Tandem_Repeat 58050 58229 163 + . . scaffold42556 GLEAN mRNA 65771 65829 0.868889 + . ID=CGI_10007191; scaffold42556 TRF Tandem_Repeat 65771 65829 118 + . . scaffold42556 GLEAN mRNA 65947 65995 0.868889 + . ID=CGI_10007191; scaffold42556 TRF Tandem_Repeat 65947 65995 80 + . . scaffold42556 GLEAN mRNA 89597 90009 1 + . ID=CGI_10007192; scaffold42556 TRF Tandem_Repeat 89597 90009 327 + . . scaffold42556 GLEAN mRNA 89597 90009 1 + . ID=CGI_10007192; scaffold42556 TRF Tandem_Repeat 89597 90009 348 + . . scaffold42556 GLEAN mRNA 169448 169570 0.664201 + . ID=CGI_10007198; scaffold42556 TRF Tandem_Repeat 169448 169570 219 + . . scaffold1631 GLEAN mRNA 132007 132052 0.997836 - . ID=CGI_10007201; scaffold1631 TRF Tandem_Repeat 132007 132052 92 + . . scaffold1631 GLEAN mRNA 137286 137344 0.997836 - . ID=CGI_10007201; scaffold1631 TRF Tandem_Repeat 137286 137344 109 + . . scaffold1631 GLEAN mRNA 139126 139224 0.997836 - . ID=CGI_10007201; scaffold1631 TRF Tandem_Repeat 139126 139224 110 + . . scaffold1631 GLEAN mRNA 166002 167453 0.969546 - . ID=CGI_10007204; scaffold1631 WUBlastX LTR_Pao 166002 167453 1164 - . . scaffold1631 GLEAN mRNA 167350 168267 0.969546 - . ID=CGI_10007204; scaffold1631 WUBlastX LTR_Pao 167350 168267 610 - . . scaffold42528 GLEAN mRNA 42174 42267 0.862454 - . ID=CGI_10007205; scaffold42528 TRF Tandem_Repeat 42174 42267 57 + . . scaffold42528 GLEAN mRNA 132706 133209 0.451859 - . ID=CGI_10007209; scaffold42528 WUBlastX LINE_CR1-L2 132706 133209 55 - . . scaffold42528 GLEAN mRNA 132697 133080 0.451859 - . ID=CGI_10007209; scaffold42528 WUBlastX LINE_CR1-L2 132697 133080 112 - . . scaffold42528 GLEAN mRNA 132544 133080 0.451859 - . ID=CGI_10007209; scaffold42528 WUBlastX LINE_CR1-L2 132544 133080 67 - . . scaffold42528 GLEAN mRNA 144171 144251 0.889923 + . ID=CGI_10007210; scaffold42528 WUBlastX LTR_ERV1 144171 144251 44 + . . scaffold42528 GLEAN mRNA 144407 144577 0.889923 + . ID=CGI_10007210; scaffold42528 WUBlastX LTR_ERV1 144407 144577 26 + . . scaffold42528 GLEAN mRNA 144177 144242 0.889923 + . ID=CGI_10007210; scaffold42528 WUBlastX LTR_ERV1 144177 144242 54 + . . scaffold42528 GLEAN mRNA 144410 144526 0.889923 + . ID=CGI_10007210; scaffold42528 WUBlastX LTR_Copia 144410 144526 49 + . . scaffold42528 GLEAN mRNA 162442 162530 0.989219 + . ID=CGI_10007212; scaffold42528 TRF Tandem_Repeat 162442 162530 90 + . . scaffold42528 GLEAN mRNA 166787 166915 0.734569 + . ID=CGI_10007213; scaffold42528 TRF Tandem_Repeat 166787 166915 80 + . . scaffold42528 GLEAN mRNA 166992 167135 0.734569 + . ID=CGI_10007213; scaffold42528 TRF Tandem_Repeat 166992 167135 164 + . . scaffold42528 GLEAN mRNA 166950 167135 0.734569 + . ID=CGI_10007213; scaffold42528 TRF Tandem_Repeat 166950 167135 194 + . . scaffold42558 GLEAN mRNA 33130 33207 0.996172 + . ID=CGI_10007217; scaffold42558 TRF Tandem_Repeat 33130 33207 156 + . . scaffold42558 GLEAN mRNA 41031 41084 0.996172 + . ID=CGI_10007217; scaffold42558 TRF Tandem_Repeat 41031 41084 108 + . . scaffold42558 GLEAN mRNA 42282 42321 0.996172 + . ID=CGI_10007217; scaffold42558 TRF Tandem_Repeat 42282 42321 80 + . . scaffold42558 GLEAN mRNA 88952 89029 0.979088 + . ID=CGI_10007220; scaffold42558 WUBlastX LINE_L1 88952 89029 28 + . . scaffold42558 GLEAN mRNA 105237 106777 0.814097 + . ID=CGI_10007221; scaffold42558 TRF Tandem_Repeat 105237 106777 2106 + . . scaffold42558 GLEAN mRNA 109219 109258 0.814097 + . ID=CGI_10007221; scaffold42558 TRF Tandem_Repeat 109219 109258 62 + . . scaffold42558 GLEAN mRNA 171386 171731 0.999935 + . ID=CGI_10007223; scaffold42558 TRF Tandem_Repeat 171386 171731 483 + . . scaffold1859 GLEAN mRNA 3921 3963 0.999623 + . ID=CGI_10007224; scaffold1859 TRF Tandem_Repeat 3921 3963 86 + . . scaffold1859 GLEAN mRNA 7722 8457 0.999623 + . ID=CGI_10007224; scaffold1859 TRF Tandem_Repeat 7722 8457 580 + . . scaffold1859 GLEAN mRNA 11539 11872 0.999623 + . ID=CGI_10007224; scaffold1859 TRF Tandem_Repeat 11539 11872 463 + . . scaffold1859 GLEAN mRNA 21359 21388 0.999623 + . ID=CGI_10007224; scaffold1859 TRF Tandem_Repeat 21359 21388 53 + . . scaffold1859 GLEAN mRNA 61600 62774 0.980385 - . ID=CGI_10007226; scaffold1859 TRF Tandem_Repeat 61600 62774 1942 + . . scaffold1859 GLEAN mRNA 71241 71285 0.980385 - . ID=CGI_10007226; scaffold1859 TRF Tandem_Repeat 71241 71285 90 + . . scaffold1859 GLEAN mRNA 75759 76019 0.980385 - . ID=CGI_10007226; scaffold1859 WUBlastX DNA_TcMar-Tc1 75759 76019 64 + . . scaffold1859 GLEAN mRNA 75759 76019 0.863497 + . ID=CGI_10007227; scaffold1859 WUBlastX DNA_TcMar-Tc1 75759 76019 64 + . . scaffold1859 GLEAN mRNA 88513 88543 0.863497 + . ID=CGI_10007227; scaffold1859 TRF Tandem_Repeat 88513 88543 62 + . . scaffold1859 GLEAN mRNA 117900 117938 0.499812 + . ID=CGI_10007229; scaffold1859 TRF Tandem_Repeat 117900 117938 69 + . . scaffold1859 GLEAN mRNA 148689 148727 0.840087 - . ID=CGI_10007230; scaffold1859 TRF Tandem_Repeat 148689 148727 78 + . . scaffold1859 GLEAN mRNA 162661 162712 0.999497 - . ID=CGI_10007232; scaffold1859 TRF Tandem_Repeat 162661 162712 50 + . . scaffold1859 GLEAN mRNA 162900 162958 0.999497 - . ID=CGI_10007232; scaffold1859 TRF Tandem_Repeat 162900 162958 55 + . . scaffold42570 GLEAN mRNA 15287 15418 0.949085 + . ID=CGI_10007233; scaffold42570 WUBlastX LINE_CR1 15287 15418 29 + . . scaffold42570 GLEAN mRNA 16578 17018 0.949085 + . ID=CGI_10007233; scaffold42570 WUBlastX LINE_CR1 16578 17018 39 + . . scaffold42570 GLEAN mRNA 16542 16592 0.949085 + . ID=CGI_10007233; scaffold42570 WUBlastX LINE_CR1-L2 16542 16592 21 + . . scaffold42570 GLEAN mRNA 16572 16847 0.949085 + . ID=CGI_10007233; scaffold42570 WUBlastX LINE_CR1-L2 16572 16847 93 + . . scaffold42570 GLEAN mRNA 16554 16694 0.949085 + . ID=CGI_10007233; scaffold42570 WUBlastX LINE_CR1 16554 16694 100 + . . scaffold42570 GLEAN mRNA 16551 16760 0.949085 + . ID=CGI_10007233; scaffold42570 WUBlastX LINE_CR1 16551 16760 94 + . . scaffold42570 GLEAN mRNA 16581 16922 0.949085 + . ID=CGI_10007233; scaffold42570 WUBlastX LINE_L2 16581 16922 60 + . . scaffold42570 GLEAN mRNA 16325 16465 0.949085 + . ID=CGI_10007233; scaffold42570 WUBlastX LINE_CR1 16325 16465 106 + . . scaffold42570 GLEAN mRNA 16343 16501 0.949085 + . ID=CGI_10007233; scaffold42570 WUBlastX LINE_CR1 16343 16501 99 + . . scaffold42570 GLEAN mRNA 16343 16540 0.949085 + . ID=CGI_10007233; scaffold42570 WUBlastX LINE_CR1-L2 16343 16540 97 + . . scaffold42570 GLEAN mRNA 41539 41583 0.460783 - . ID=CGI_10007234; scaffold42570 TRF Tandem_Repeat 41539 41583 63 + . . scaffold42570 GLEAN mRNA 47795 48030 0.460783 - . ID=CGI_10007234; scaffold42570 TRF Tandem_Repeat 47795 48030 463 + . . scaffold42570 GLEAN mRNA 169335 169365 1 - . ID=CGI_10007239; scaffold42570 TRF Tandem_Repeat 169335 169365 62 + . . scaffold1509 GLEAN mRNA 29731 29891 0.990769 - . ID=CGI_10007240; scaffold1509 TRF Tandem_Repeat 29731 29891 85 + . . scaffold1509 GLEAN mRNA 29981 30068 0.990769 - . ID=CGI_10007240; scaffold1509 TRF Tandem_Repeat 29981 30068 167 + . . scaffold1509 GLEAN mRNA 30810 30992 0.990769 - . ID=CGI_10007240; scaffold1509 TRF Tandem_Repeat 30810 30992 89 + . . scaffold1509 GLEAN mRNA 32553 32621 0.990769 - . ID=CGI_10007240; scaffold1509 TRF Tandem_Repeat 32553 32621 122 + . . scaffold1509 GLEAN mRNA 34287 34335 0.990769 - . ID=CGI_10007240; scaffold1509 TRF Tandem_Repeat 34287 34335 89 + . . scaffold1509 GLEAN mRNA 109214 109255 0.885266 - . ID=CGI_10007241; scaffold1509 TRF Tandem_Repeat 109214 109255 77 + . . scaffold1509 GLEAN mRNA 111055 111108 0.885266 - . ID=CGI_10007241; scaffold1509 TRF Tandem_Repeat 111055 111108 99 + . . scaffold1509 GLEAN mRNA 112564 112613 0.885266 - . ID=CGI_10007241; scaffold1509 TRF Tandem_Repeat 112564 112613 100 + . . scaffold1509 GLEAN mRNA 115789 115867 0.885266 - . ID=CGI_10007241; scaffold1509 TRF Tandem_Repeat 115789 115867 144 + . . scaffold1509 GLEAN mRNA 121037 121097 0.885266 - . ID=CGI_10007241; scaffold1509 TRF Tandem_Repeat 121037 121097 122 + . . scaffold1509 GLEAN mRNA 126890 126938 0.885266 - . ID=CGI_10007241; scaffold1509 TRF Tandem_Repeat 126890 126938 89 + . . scaffold1509 GLEAN mRNA 132692 132767 0.885266 - . ID=CGI_10007241; scaffold1509 TRF Tandem_Repeat 132692 132767 145 + . . scaffold1509 GLEAN mRNA 138207 138483 0.885266 - . ID=CGI_10007241; scaffold1509 TRF Tandem_Repeat 138207 138483 374 + . . scaffold493 GLEAN mRNA 22688 23272 0.890452 + . ID=CGI_10007244; scaffold493 TRF Tandem_Repeat 22688 23272 449 + . . scaffold493 GLEAN mRNA 22688 23272 0.890452 + . ID=CGI_10007244; scaffold493 TRF Tandem_Repeat 22688 23272 644 + . . scaffold493 GLEAN mRNA 22707 23272 0.890452 + . ID=CGI_10007244; scaffold493 TRF Tandem_Repeat 22707 23272 701 + . . scaffold493 GLEAN mRNA 31535 31738 1 - . ID=CGI_10007245; scaffold493 TRF Tandem_Repeat 31535 31738 103 + . . scaffold493 GLEAN mRNA 36214 36402 0.999595 + . ID=CGI_10007246; scaffold493 WUBlastX LINE_RTE-X 36214 36402 34 + . . scaffold493 GLEAN mRNA 36106 36345 0.999595 + . ID=CGI_10007246; scaffold493 WUBlastX LINE_RTE-X 36106 36345 44 + . . scaffold493 GLEAN mRNA 36214 36360 0.999595 + . ID=CGI_10007246; scaffold493 WUBlastX LINE_RTE-X 36214 36360 48 + . . scaffold493 GLEAN mRNA 36208 36336 0.999595 + . ID=CGI_10007246; scaffold493 WUBlastX LINE_RTE-X 36208 36336 79 + . . scaffold493 GLEAN mRNA 62919 62968 0.916759 + . ID=CGI_10007247; scaffold493 TRF Tandem_Repeat 62919 62968 100 + . . scaffold493 GLEAN mRNA 64043 64090 0.916759 + . ID=CGI_10007247; scaffold493 TRF Tandem_Repeat 64043 64090 96 + . . scaffold493 GLEAN mRNA 79420 79461 0.916759 + . ID=CGI_10007247; scaffold493 TRF Tandem_Repeat 79420 79461 59 + . . scaffold493 GLEAN mRNA 79631 80477 0.916759 + . ID=CGI_10007247; scaffold493 TRF Tandem_Repeat 79631 80477 1273 + . . scaffold493 GLEAN mRNA 74273 74779 0.916759 + . ID=CGI_10007247; scaffold493 WUBlastX LINE_RTE-X 74273 74779 43 - . . scaffold493 GLEAN mRNA 74384 74767 0.916759 + . ID=CGI_10007247; scaffold493 WUBlastX LINE_RTE-X 74384 74767 67 - . . scaffold493 GLEAN mRNA 82969 83106 0.916759 + . ID=CGI_10007247; scaffold493 TRF Tandem_Repeat 82969 83106 75 + . . scaffold493 GLEAN mRNA 83114 83293 0.916759 + . ID=CGI_10007247; scaffold493 TRF Tandem_Repeat 83114 83293 148 + . . scaffold493 GLEAN mRNA 96803 96944 0.916759 + . ID=CGI_10007247; scaffold493 TRF Tandem_Repeat 96803 96944 92 + . . scaffold493 GLEAN mRNA 96948 97130 0.916759 + . ID=CGI_10007247; scaffold493 TRF Tandem_Repeat 96948 97130 188 + . . scaffold493 GLEAN mRNA 96948 97148 0.916759 + . ID=CGI_10007247; scaffold493 TRF Tandem_Repeat 96948 97148 154 + . . scaffold493 GLEAN mRNA 100298 100332 0.916759 + . ID=CGI_10007247; scaffold493 TRF Tandem_Repeat 100298 100332 70 + . . scaffold493 GLEAN mRNA 113812 113847 0.99385 + . ID=CGI_10007248; scaffold493 TRF Tandem_Repeat 113812 113847 72 + . . scaffold493 GLEAN mRNA 131877 131970 0.634779 - . ID=CGI_10007249; scaffold493 TRF Tandem_Repeat 131877 131970 74 + . . scaffold493 GLEAN mRNA 131826 131971 0.634779 - . ID=CGI_10007249; scaffold493 TRF Tandem_Repeat 131826 131971 211 + . . scaffold493 GLEAN mRNA 158591 158965 0.999991 + . ID=CGI_10007250; scaffold493 WUBlastX LINE_L1-Tx1 158591 158965 46 + . . scaffold493 GLEAN mRNA 158597 158860 0.999991 + . ID=CGI_10007250; scaffold493 WUBlastX LINE_L1-Tx1 158597 158860 76 + . . scaffold42592 GLEAN mRNA 37804 38095 0.805998 + . ID=CGI_10007255; scaffold42592 TRF Tandem_Repeat 37804 38095 453 + . . scaffold42592 GLEAN mRNA 43559 43588 0.805998 + . ID=CGI_10007255; scaffold42592 TRF Tandem_Repeat 43559 43588 60 + . . scaffold42592 GLEAN mRNA 37804 38095 0.937129 - . ID=CGI_10007256; scaffold42592 TRF Tandem_Repeat 37804 38095 453 + . . scaffold42592 GLEAN mRNA 48229 48275 0.998724 - . ID=CGI_10007257; scaffold42592 TRF Tandem_Repeat 48229 48275 94 + . . scaffold42592 GLEAN mRNA 55230 55278 0.903274 - . ID=CGI_10007259; scaffold42592 TRF Tandem_Repeat 55230 55278 62 + . . scaffold42592 GLEAN mRNA 57940 57989 0.903274 - . ID=CGI_10007259; scaffold42592 TRF Tandem_Repeat 57940 57989 91 + . . scaffold42592 GLEAN mRNA 58638 58683 0.903274 - . ID=CGI_10007259; scaffold42592 TRF Tandem_Repeat 58638 58683 92 + . . scaffold42592 GLEAN mRNA 68673 68724 0.903274 - . ID=CGI_10007259; scaffold42592 TRF Tandem_Repeat 68673 68724 104 + . . scaffold42568 GLEAN mRNA 9819 9847 0.999372 + . ID=CGI_10007264; scaffold42568 WUBlastX LINE_L1 9819 10289 24 - . . scaffold42568 GLEAN mRNA 39860 39928 0.50892 + . ID=CGI_10007265; scaffold42568 TRF Tandem_Repeat 39860 39928 129 + . . scaffold42568 GLEAN mRNA 35044 35496 0.50892 + . ID=CGI_10007265; scaffold42568 WUBlastX DNA_IS4EU 35044 35496 142 + . . scaffold42568 GLEAN mRNA 35035 35700 0.50892 + . ID=CGI_10007265; scaffold42568 WUBlastX DNA_NOF? 35035 35700 128 + . . scaffold42568 GLEAN mRNA 72629 73457 0.2702 - . ID=CGI_10007267; scaffold42568 TRF Tandem_Repeat 72629 73457 1073 + . . scaffold42596 GLEAN mRNA 1550 1615 1 + . ID=CGI_10007272; scaffold42596 TRF Tandem_Repeat 1550 1615 132 + . . scaffold42596 GLEAN mRNA 2204 2244 1 + . ID=CGI_10007272; scaffold42596 TRF Tandem_Repeat 2204 2244 82 + . . scaffold42596 GLEAN mRNA 9279 9331 1 + . ID=CGI_10007272; scaffold42596 TRF Tandem_Repeat 9279 9331 88 + . . scaffold42596 GLEAN mRNA 9279 9334 1 + . ID=CGI_10007272; scaffold42596 TRF Tandem_Repeat 9279 9334 58 + . . scaffold42596 GLEAN mRNA 9279 9334 1 + . ID=CGI_10007272; scaffold42596 TRF Tandem_Repeat 9279 9334 76 + . . scaffold42596 GLEAN mRNA 33933 34164 0.611644 - . ID=CGI_10007274; scaffold42596 TRF Tandem_Repeat 33933 34164 176 + . . scaffold42596 GLEAN mRNA 55543 55596 0.611644 - . ID=CGI_10007274; scaffold42596 TRF Tandem_Repeat 55543 55596 74 + . . scaffold42596 GLEAN mRNA 124290 124336 0.999563 + . ID=CGI_10007275; scaffold42596 TRF Tandem_Repeat 124290 124927 1051 + . . scaffold42596 GLEAN mRNA 132237 132500 0.990768 - . ID=CGI_10007276; scaffold42596 TRF Tandem_Repeat 132237 132500 422 + . . scaffold42596 GLEAN mRNA 134747 134926 0.990768 - . ID=CGI_10007276; scaffold42596 TRF Tandem_Repeat 134747 134926 306 + . . scaffold42596 GLEAN mRNA 136180 136267 0.990768 - . ID=CGI_10007276; scaffold42596 TRF Tandem_Repeat 136180 136267 66 + . . scaffold42596 GLEAN mRNA 136174 136312 0.990768 - . ID=CGI_10007276; scaffold42596 TRF Tandem_Repeat 136174 136312 260 + . . scaffold42596 GLEAN mRNA 137218 137243 0.990768 - . ID=CGI_10007276; scaffold42596 TRF Tandem_Repeat 137218 137243 52 + . . scaffold1746 GLEAN mRNA 48210 48623 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 48210 48623 666 + . . scaffold1746 GLEAN mRNA 50603 50982 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 50603 50982 543 + . . scaffold1746 GLEAN mRNA 54853 54954 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 54853 54954 127 + . . scaffold1746 GLEAN mRNA 56570 57421 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 56570 57421 961 + . . scaffold1746 GLEAN mRNA 64702 65149 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 64702 65149 589 + . . scaffold1746 GLEAN mRNA 66485 66755 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 66485 66755 428 + . . scaffold1746 GLEAN mRNA 72302 72471 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 72302 72471 200 + . . scaffold1746 GLEAN mRNA 72382 72489 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 72382 72489 126 + . . scaffold1746 GLEAN mRNA 74319 74755 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 74319 74755 743 + . . scaffold1746 GLEAN mRNA 83304 83332 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 83304 83332 58 + . . scaffold1746 GLEAN mRNA 84789 84837 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 84789 84837 98 + . . scaffold1746 GLEAN mRNA 88518 88562 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 88518 88562 90 + . . scaffold1746 GLEAN mRNA 91868 91914 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 91868 91914 94 + . . scaffold1746 GLEAN mRNA 99689 100668 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 99689 100668 1220 + . . scaffold1746 GLEAN mRNA 106756 107819 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 106756 107819 1611 + . . scaffold1746 GLEAN mRNA 116347 117455 1 + . ID=CGI_10007281; scaffold1746 TRF Tandem_Repeat 116347 117455 1330 + . . scaffold1746 GLEAN mRNA 116347 117455 1 + . ID=CGI_10007281; scaffold1746 TRF Tandem_Repeat 116347 117455 1097 + . . scaffold1819 GLEAN mRNA 106096 106138 0.535448 - . ID=CGI_10007292; scaffold1819 WUBlastX LINE_L1 106073 106138 22 - . . scaffold1819 GLEAN mRNA 141024 141412 0.528508 + . ID=CGI_10007295; scaffold1819 TRF Tandem_Repeat 141024 141412 232 + . . scaffold1819 GLEAN mRNA 141120 141238 0.528508 + . ID=CGI_10007295; scaffold1819 TRF Tandem_Repeat 141120 141238 220 + . . scaffold1833 GLEAN mRNA 18040 18591 0.776794 - . ID=CGI_10007297; scaffold1833 WUBlastX LINE_RTE-X 18040 18675 195 - . . scaffold1833 GLEAN mRNA 20582 20648 1 - . ID=CGI_10007298; scaffold1833 TRF Tandem_Repeat 20582 20648 70 + . . scaffold1833 GLEAN mRNA 24294 24350 1 - . ID=CGI_10007298; scaffold1833 TRF Tandem_Repeat 24294 24350 114 + . . scaffold1833 GLEAN mRNA 27343 27493 1 - . ID=CGI_10007298; scaffold1833 TRF Tandem_Repeat 27343 27493 125 + . . scaffold1833 GLEAN mRNA 18617 18675 1 - . ID=CGI_10007298; scaffold1833 WUBlastX LINE_RTE-X 18040 18675 195 - . . scaffold1833 GLEAN mRNA 43874 43936 0.99915 + . ID=CGI_10007299; scaffold1833 TRF Tandem_Repeat 43874 43936 126 + . . scaffold1833 GLEAN mRNA 56015 56165 0.917044 + . ID=CGI_10007300; scaffold1833 TRF Tandem_Repeat 56015 56165 100 + . . scaffold1833 GLEAN mRNA 57544 57612 0.917044 + . ID=CGI_10007300; scaffold1833 TRF Tandem_Repeat 57544 57612 138 + . . scaffold1833 GLEAN mRNA 60844 61527 0.917044 + . ID=CGI_10007300; scaffold1833 WUBlastX RC_Helitron 60844 61527 36 + . . scaffold1833 GLEAN mRNA 61726 63102 0.917044 + . ID=CGI_10007300; scaffold1833 WUBlastX RC_Helitron 61726 63102 363 + . . scaffold1833 GLEAN mRNA 57902 58120 0.917044 + . ID=CGI_10007300; scaffold1833 WUBlastX LINE_L1 57902 58120 42 - . . scaffold1833 GLEAN mRNA 60976 63237 0.917044 + . ID=CGI_10007300; scaffold1833 WUBlastX RC_Helitron 60976 63237 349 + . . scaffold1833 GLEAN mRNA 62251 68409 0.917044 + . ID=CGI_10007300; scaffold1833 WUBlastX RC_Helitron 62251 68409 3041 + . . scaffold1833 GLEAN mRNA 132895 132944 0.286477 - . ID=CGI_10007301; scaffold1833 TRF Tandem_Repeat 132895 132944 75 + . . scaffold1833 GLEAN mRNA 143389 143422 0.286477 - . ID=CGI_10007301; scaffold1833 TRF Tandem_Repeat 143389 143422 50 + . . scaffold1833 GLEAN mRNA 150498 150558 0.286477 - . ID=CGI_10007301; scaffold1833 TRF Tandem_Repeat 150498 150558 115 + . . scaffold1833 GLEAN mRNA 157573 157678 0.286477 - . ID=CGI_10007301; scaffold1833 TRF Tandem_Repeat 157573 157678 133 + . . scaffold42584 GLEAN mRNA 62616 62654 0.999415 - . ID=CGI_10007306; scaffold42584 TRF Tandem_Repeat 62616 62654 78 + . . scaffold42584 GLEAN mRNA 76687 76722 0.592742 + . ID=CGI_10007308; scaffold42584 TRF Tandem_Repeat 76687 76722 63 + . . scaffold42584 GLEAN mRNA 72799 73317 0.592742 + . ID=CGI_10007308; scaffold42584 WUBlastX LTR_DIRS 72799 73317 125 + . . scaffold42584 GLEAN mRNA 73436 73783 0.592742 + . ID=CGI_10007308; scaffold42584 WUBlastX LTR_DIRS 73436 73783 172 + . . scaffold42584 GLEAN mRNA 95489 95995 0.998677 + . ID=CGI_10007309; scaffold42584 WUBlastX DNA_Crypton 95489 95995 71 - . . scaffold42584 GLEAN mRNA 96465 97043 0.998677 + . ID=CGI_10007309; scaffold42584 WUBlastX DNA_Crypton 96465 97043 71 - . . scaffold42584 GLEAN mRNA 95483 95896 0.998677 + . ID=CGI_10007309; scaffold42584 WUBlastX DNA_Crypton 95483 95896 87 - . . scaffold42584 GLEAN mRNA 104520 104756 0.998677 + . ID=CGI_10007309; scaffold42584 TRF Tandem_Repeat 104520 104756 145 + . . scaffold42584 GLEAN mRNA 104520 104631 0.998677 + . ID=CGI_10007309; scaffold42584 TRF Tandem_Repeat 104520 104631 134 + . . scaffold42584 GLEAN mRNA 104548 104772 0.998677 + . ID=CGI_10007309; scaffold42584 TRF Tandem_Repeat 104548 104772 172 + . . scaffold42584 GLEAN mRNA 104548 104772 0.998677 + . ID=CGI_10007309; scaffold42584 TRF Tandem_Repeat 104548 104772 145 + . . scaffold42584 GLEAN mRNA 104609 104772 0.998677 + . ID=CGI_10007309; scaffold42584 TRF Tandem_Repeat 104609 104772 160 + . . scaffold42584 GLEAN mRNA 100564 100887 0.998677 + . ID=CGI_10007309; scaffold42584 WUBlastX LINE_L2 100564 100887 48 + . . scaffold42584 GLEAN mRNA 100558 100734 0.998677 + . ID=CGI_10007309; scaffold42584 WUBlastX LINE_L2 100558 100734 84 + . . scaffold42584 GLEAN mRNA 100746 100991 0.998677 + . ID=CGI_10007309; scaffold42584 WUBlastX LINE_CR1-L2 100746 100991 24 + . . scaffold42584 GLEAN mRNA 100207 100683 0.998677 + . ID=CGI_10007309; scaffold42584 WUBlastX LINE_CR1-L2 100207 100683 39 + . . scaffold42584 GLEAN mRNA 100564 100701 0.998677 + . ID=CGI_10007309; scaffold42584 WUBlastX LINE_CR1 100564 100701 93 + . . scaffold42584 GLEAN mRNA 100330 100734 0.998677 + . ID=CGI_10007309; scaffold42584 WUBlastX LINE_L2 100330 100734 47 + . . scaffold42584 GLEAN mRNA 100408 100683 0.998677 + . ID=CGI_10007309; scaffold42584 WUBlastX LINE_CR1 100408 100683 62 + . . scaffold42584 GLEAN mRNA 100573 100803 0.998677 + . ID=CGI_10007309; scaffold42584 WUBlastX LINE_L2 100573 100803 65 + . . scaffold42604 GLEAN mRNA 31096 31149 1 + . ID=CGI_10007312; scaffold42604 TRF Tandem_Repeat 31096 31149 74 + . . scaffold42604 GLEAN mRNA 31104 31149 1 + . ID=CGI_10007312; scaffold42604 TRF Tandem_Repeat 31104 31149 56 + . . scaffold42604 GLEAN mRNA 28589 29245 1 + . ID=CGI_10007312; scaffold42604 WUBlastX LTR_DIRS 28589 29245 22 + . . scaffold42604 GLEAN mRNA 29126 29245 1 + . ID=CGI_10007312; scaffold42604 WUBlastX LTR_DIRS 29126 29245 54 + . . scaffold42604 GLEAN mRNA 45836 45866 0.9993 - . ID=CGI_10007313; scaffold42604 TRF Tandem_Repeat 45836 45866 55 + . . scaffold42604 GLEAN mRNA 45978 46032 0.9993 - . ID=CGI_10007313; scaffold42604 TRF Tandem_Repeat 45978 46032 96 + . . scaffold42604 GLEAN mRNA 55304 55329 0.9993 - . ID=CGI_10007313; scaffold42604 TRF Tandem_Repeat 55304 55329 52 + . . scaffold42604 GLEAN mRNA 59526 59686 0.9993 - . ID=CGI_10007313; scaffold42604 TRF Tandem_Repeat 59526 59686 115 + . . scaffold42604 GLEAN mRNA 59526 59686 0.9993 - . ID=CGI_10007313; scaffold42604 TRF Tandem_Repeat 59526 59686 151 + . . scaffold42604 GLEAN mRNA 65256 65903 0.9993 - . ID=CGI_10007313; scaffold42604 TRF Tandem_Repeat 65256 65903 847 + . . scaffold42604 GLEAN mRNA 65256 65903 0.9993 - . ID=CGI_10007313; scaffold42604 TRF Tandem_Repeat 65256 65903 996 + . . scaffold42604 GLEAN mRNA 65256 65906 0.9993 - . ID=CGI_10007313; scaffold42604 TRF Tandem_Repeat 65256 65906 885 + . . scaffold42604 GLEAN mRNA 85104 85153 0.998973 - . ID=CGI_10007314; scaffold42604 TRF Tandem_Repeat 85104 85153 100 + . . scaffold42604 GLEAN mRNA 88956 89130 0.998973 - . ID=CGI_10007314; scaffold42604 TRF Tandem_Repeat 88956 89130 305 + . . scaffold42604 GLEAN mRNA 91706 91751 0.998973 - . ID=CGI_10007314; scaffold42604 TRF Tandem_Repeat 91706 91751 92 + . . scaffold42604 GLEAN mRNA 93045 93092 0.998973 - . ID=CGI_10007314; scaffold42604 TRF Tandem_Repeat 93045 93092 96 + . . scaffold1856 GLEAN mRNA 8664 8720 0.991888 + . ID=CGI_10007316; scaffold1856 TRF Tandem_Repeat 8664 8720 107 + . . scaffold1856 GLEAN mRNA 25600 25626 0.991888 + . ID=CGI_10007316; scaffold1856 TRF Tandem_Repeat 25600 25626 54 + . . scaffold1856 GLEAN mRNA 26924 26960 0.991888 + . ID=CGI_10007316; scaffold1856 TRF Tandem_Repeat 26924 26960 65 + . . scaffold1856 GLEAN mRNA 28489 28515 0.991888 + . ID=CGI_10007316; scaffold1856 TRF Tandem_Repeat 28489 28515 54 + . . scaffold1856 GLEAN mRNA 61471 61665 0.497882 + . ID=CGI_10007317; scaffold1856 TRF Tandem_Repeat 61471 61665 363 + . . scaffold1856 GLEAN mRNA 70065 70226 0.497882 + . ID=CGI_10007317; scaffold1856 TRF Tandem_Repeat 70065 70226 297 + . . scaffold1856 GLEAN mRNA 77295 77396 0.503436 - . ID=CGI_10007318; scaffold1856 TRF Tandem_Repeat 77295 77396 127 + . . scaffold1856 GLEAN mRNA 84847 84897 0.992164 + . ID=CGI_10007320; scaffold1856 TRF Tandem_Repeat 84847 84897 102 + . . scaffold1856 GLEAN mRNA 91738 91764 0.76904 - . ID=CGI_10007321; scaffold1856 TRF Tandem_Repeat 91738 91764 54 + . . scaffold1856 GLEAN mRNA 100651 100687 0.998256 - . ID=CGI_10007322; scaffold1856 TRF Tandem_Repeat 100651 100687 65 + . . scaffold1856 GLEAN mRNA 101614 101692 0.998256 - . ID=CGI_10007322; scaffold1856 TRF Tandem_Repeat 101614 101692 54 + . . scaffold1856 GLEAN mRNA 102524 102594 0.998256 - . ID=CGI_10007322; scaffold1856 TRF Tandem_Repeat 102524 102594 70 + . . scaffold1856 GLEAN mRNA 105804 105835 0.998256 - . ID=CGI_10007322; scaffold1856 TRF Tandem_Repeat 105804 105835 64 + . . scaffold1856 GLEAN mRNA 116113 116198 0.992668 - . ID=CGI_10007323; scaffold1856 TRF Tandem_Repeat 116113 116198 165 + . . scaffold1856 GLEAN mRNA 138945 139197 0.999547 - . ID=CGI_10007324; scaffold1856 TRF Tandem_Repeat 138945 139197 314 + . . scaffold1856 GLEAN mRNA 152855 152896 0.999993 - . ID=CGI_10007326; scaffold1856 TRF Tandem_Repeat 152855 152896 84 + . . scaffold1856 GLEAN mRNA 159611 160566 1 + . ID=CGI_10007328; scaffold1856 TRF Tandem_Repeat 159611 160566 1370 + . . scaffold1856 GLEAN mRNA 160590 160643 1 + . ID=CGI_10007328; scaffold1856 TRF Tandem_Repeat 160590 160643 63 + . . scaffold1856 GLEAN mRNA 160593 160652 1 + . ID=CGI_10007328; scaffold1856 TRF Tandem_Repeat 160593 160652 66 + . . scaffold1856 GLEAN mRNA 160590 160652 1 + . ID=CGI_10007328; scaffold1856 TRF Tandem_Repeat 160590 160652 54 + . . scaffold1856 GLEAN mRNA 169496 169527 0.999991 - . ID=CGI_10007329; scaffold1856 TRF Tandem_Repeat 169496 169527 50 + . . scaffold1856 GLEAN mRNA 172807 172859 0.999991 - . ID=CGI_10007329; scaffold1856 TRF Tandem_Repeat 172807 172859 106 + . . scaffold1856 GLEAN mRNA 172860 172886 0.999991 - . ID=CGI_10007329; scaffold1856 TRF Tandem_Repeat 172860 172886 54 + . . scaffold42598 GLEAN mRNA 14855 14895 0.999957 - . ID=CGI_10007331; scaffold42598 TRF Tandem_Repeat 14855 14895 61 + . . scaffold42598 GLEAN mRNA 16936 16989 0.999957 - . ID=CGI_10007331; scaffold42598 TRF Tandem_Repeat 16936 16989 74 + . . scaffold42598 GLEAN mRNA 52516 53160 0.0124996 + . ID=CGI_10007333; scaffold42598 WUBlastX LINE_RTE-X 52516 53160 346 - . . scaffold42598 GLEAN mRNA 53232 54407 0.0124996 + . ID=CGI_10007333; scaffold42598 WUBlastX LINE_RTE-X 53232 54407 626 - . . scaffold42598 GLEAN mRNA 52378 53160 0.0124996 + . ID=CGI_10007333; scaffold42598 WUBlastX LINE_RTE-X 52378 53160 200 - . . scaffold42598 GLEAN mRNA 97325 97358 0.534867 + . ID=CGI_10007334; scaffold42598 TRF Tandem_Repeat 97325 97358 50 + . . scaffold42598 GLEAN mRNA 98715 98791 0.534867 + . ID=CGI_10007334; scaffold42598 TRF Tandem_Repeat 98715 98791 118 + . . scaffold42598 GLEAN mRNA 109523 109566 0.37076 - . ID=CGI_10007335; scaffold42598 TRF Tandem_Repeat 109523 109566 56 + . . scaffold42598 GLEAN mRNA 148274 148984 0.8437 + . ID=CGI_10007337; scaffold42598 TRF Tandem_Repeat 148274 148984 563 + . . scaffold42598 GLEAN mRNA 148277 148954 0.8437 + . ID=CGI_10007337; scaffold42598 TRF Tandem_Repeat 148277 148954 209 + . . scaffold42598 GLEAN mRNA 151528 151582 0.8437 + . ID=CGI_10007337; scaffold42598 TRF Tandem_Repeat 151528 151582 92 + . . scaffold42598 GLEAN mRNA 151593 152283 0.8437 + . ID=CGI_10007337; scaffold42598 TRF Tandem_Repeat 151593 152283 1000 + . . scaffold42618 GLEAN mRNA 64395 64442 0.510041 + . ID=CGI_10007340; scaffold42618 TRF Tandem_Repeat 64395 64442 96 + . . scaffold42618 GLEAN mRNA 72521 72570 0.510041 + . ID=CGI_10007340; scaffold42618 TRF Tandem_Repeat 72521 72570 91 + . . scaffold42618 GLEAN mRNA 156679 156731 1 - . ID=CGI_10007341; scaffold42618 TRF Tandem_Repeat 156679 156731 106 + . . scaffold42634 GLEAN mRNA 21562 21620 0.889922 - . ID=CGI_10007345; scaffold42634 TRF Tandem_Repeat 21562 21620 118 + . . scaffold42634 GLEAN mRNA 34378 34746 0.250055 + . ID=CGI_10007347; scaffold42634 TRF Tandem_Repeat 34378 34746 459 + . . scaffold42634 GLEAN mRNA 49855 49889 0.250055 + . ID=CGI_10007347; scaffold42634 TRF Tandem_Repeat 49855 49889 52 + . . scaffold42634 GLEAN mRNA 61437 61498 0.250055 + . ID=CGI_10007347; scaffold42634 TRF Tandem_Repeat 61437 61498 81 + . . scaffold1871 GLEAN mRNA 5331 5360 0.975361 - . ID=CGI_10007352; scaffold1871 TRF Tandem_Repeat 5331 5360 60 + . . scaffold1871 GLEAN mRNA 9186 9226 0.975361 - . ID=CGI_10007352; scaffold1871 TRF Tandem_Repeat 9186 9226 82 + . . scaffold1871 GLEAN mRNA 15324 15382 0.975361 - . ID=CGI_10007352; scaffold1871 TRF Tandem_Repeat 15324 15382 102 + . . scaffold1871 GLEAN mRNA 37395 38009 0.975361 - . ID=CGI_10007352; scaffold1871 TRF Tandem_Repeat 37395 38009 575 + . . scaffold1871 GLEAN mRNA 37587 38009 0.975361 - . ID=CGI_10007352; scaffold1871 TRF Tandem_Repeat 37587 38009 328 + . . scaffold1871 GLEAN mRNA 37417 38006 0.975361 - . ID=CGI_10007352; scaffold1871 TRF Tandem_Repeat 37417 38006 294 + . . scaffold1871 GLEAN mRNA 38022 38376 0.975361 - . ID=CGI_10007352; scaffold1871 TRF Tandem_Repeat 38022 38376 240 + . . scaffold1871 GLEAN mRNA 38122 38376 0.975361 - . ID=CGI_10007352; scaffold1871 TRF Tandem_Repeat 38122 38376 214 + . . scaffold1871 GLEAN mRNA 38006 38376 0.975361 - . ID=CGI_10007352; scaffold1871 TRF Tandem_Repeat 38006 38376 271 + . . scaffold1871 GLEAN mRNA 48758 48790 0.982597 - . ID=CGI_10007353; scaffold1871 TRF Tandem_Repeat 48758 48790 66 + . . scaffold1871 GLEAN mRNA 62580 62629 0.99324 + . ID=CGI_10007354; scaffold1871 TRF Tandem_Repeat 62580 62629 91 + . . scaffold1871 GLEAN mRNA 74316 74552 0.99324 + . ID=CGI_10007354; scaffold1871 TRF Tandem_Repeat 74316 74552 402 + . . scaffold1871 GLEAN mRNA 84116 84176 0.99324 + . ID=CGI_10007354; scaffold1871 TRF Tandem_Repeat 84116 84176 104 + . . scaffold1871 GLEAN mRNA 119269 119365 0.999557 + . ID=CGI_10007357; scaffold1871 TRF Tandem_Repeat 119269 119365 106 + . . scaffold1871 GLEAN mRNA 160696 160730 0.999998 - . ID=CGI_10007359; scaffold1871 TRF Tandem_Repeat 160696 160730 70 + . . scaffold828 GLEAN mRNA 4086 4236 0.999675 - . ID=CGI_10007361; scaffold828 TRF Tandem_Repeat 4086 4236 142 + . . scaffold828 GLEAN mRNA 4140 4384 0.999675 - . ID=CGI_10007361; scaffold828 TRF Tandem_Repeat 4140 4384 308 + . . scaffold828 GLEAN mRNA 13856 13856 1 + . ID=CGI_10007362; scaffold828 TRF Tandem_Repeat 13856 14065 375 + . . scaffold828 GLEAN mRNA 17095 17237 0.999674 + . ID=CGI_10007363; scaffold828 TRF Tandem_Repeat 17095 17237 162 + . . scaffold828 GLEAN mRNA 17232 17332 0.999674 + . ID=CGI_10007363; scaffold828 TRF Tandem_Repeat 17232 17332 103 + . . scaffold828 GLEAN mRNA 18002 18146 0.999674 + . ID=CGI_10007363; scaffold828 TRF Tandem_Repeat 18002 18146 114 + . . scaffold828 GLEAN mRNA 17966 18177 0.999674 + . ID=CGI_10007363; scaffold828 TRF Tandem_Repeat 17966 18177 157 + . . scaffold828 GLEAN mRNA 18563 18923 0.999674 + . ID=CGI_10007363; scaffold828 TRF Tandem_Repeat 18563 18923 106 + . . scaffold828 GLEAN mRNA 18533 18923 0.999674 + . ID=CGI_10007363; scaffold828 TRF Tandem_Repeat 18533 18923 284 + . . scaffold828 GLEAN mRNA 24214 24249 0.999674 + . ID=CGI_10007363; scaffold828 TRF Tandem_Repeat 24214 24249 54 + . . scaffold828 GLEAN mRNA 21183 22046 0.999674 + . ID=CGI_10007363; scaffold828 WUBlastX LINE_L1-Tx1 21183 22046 90 - . . scaffold828 GLEAN mRNA 17095 17237 0.596994 - . ID=CGI_10007364; scaffold828 TRF Tandem_Repeat 17095 17237 162 + . . scaffold828 GLEAN mRNA 17232 17332 0.596994 - . ID=CGI_10007364; scaffold828 TRF Tandem_Repeat 17232 17332 103 + . . scaffold828 GLEAN mRNA 18002 18146 0.596994 - . ID=CGI_10007364; scaffold828 TRF Tandem_Repeat 18002 18146 114 + . . scaffold828 GLEAN mRNA 17966 18177 0.596994 - . ID=CGI_10007364; scaffold828 TRF Tandem_Repeat 17966 18177 157 + . . scaffold828 GLEAN mRNA 18563 18923 0.596994 - . ID=CGI_10007364; scaffold828 TRF Tandem_Repeat 18563 18923 106 + . . scaffold828 GLEAN mRNA 18533 18923 0.596994 - . ID=CGI_10007364; scaffold828 TRF Tandem_Repeat 18533 18923 284 + . . scaffold828 GLEAN mRNA 24214 24249 0.596994 - . ID=CGI_10007364; scaffold828 TRF Tandem_Repeat 24214 24249 54 + . . scaffold828 GLEAN mRNA 21183 22046 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX LINE_L1-Tx1 21183 22046 90 - . . scaffold828 GLEAN mRNA 35597 35639 0.596994 - . ID=CGI_10007364; scaffold828 TRF Tandem_Repeat 35597 35639 86 + . . scaffold828 GLEAN mRNA 48383 48534 0.596994 - . ID=CGI_10007364; scaffold828 TRF Tandem_Repeat 48383 48534 65 + . . scaffold828 GLEAN mRNA 52812 52843 0.596994 - . ID=CGI_10007364; scaffold828 TRF Tandem_Repeat 52812 52843 55 + . . scaffold828 GLEAN mRNA 53717 53971 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX LINE_L2 53717 53971 76 + . . scaffold828 GLEAN mRNA 54463 54657 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX LINE_L1 54463 54657 116 + . . scaffold828 GLEAN mRNA 58582 59598 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX DNA_TcMar-Tc2 58582 59598 196 - . . scaffold828 GLEAN mRNA 58405 59322 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX DNA_TcMar-Tc2 58405 59322 143 - . . scaffold828 GLEAN mRNA 58591 59280 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX DNA_TcMar-Tc2 58591 59280 197 - . . scaffold828 GLEAN mRNA 53732 53923 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX LINE_L2 53732 53923 76 + . . scaffold828 GLEAN mRNA 53549 53971 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX LINE_L2 53549 53971 45 + . . scaffold828 GLEAN mRNA 53762 54010 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX LINE_L2 53762 54010 43 + . . scaffold828 GLEAN mRNA 75713 77839 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX LINE_L1-Tx1 75713 77839 341 + . . scaffold828 GLEAN mRNA 75632 76267 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX LINE_L1-Tx1 75632 76267 344 + . . scaffold828 GLEAN mRNA 76766 77839 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX LINE_L1-Tx1 76766 77839 777 + . . scaffold828 GLEAN mRNA 74830 75552 0.596994 - . ID=CGI_10007364; scaffold828 WUBlastX LINE_L2 74830 75552 97 + . . scaffold828 GLEAN mRNA 80573 80601 0.986584 - . ID=CGI_10007365; scaffold828 TRF Tandem_Repeat 80573 80601 51 + . . scaffold828 GLEAN mRNA 80933 81091 0.986584 - . ID=CGI_10007365; scaffold828 WUBlastX LINE_L1-Tx1 80933 81091 22 - . . scaffold828 GLEAN mRNA 89965 90016 0.986584 - . ID=CGI_10007365; scaffold828 TRF Tandem_Repeat 89965 90016 86 + . . scaffold828 GLEAN mRNA 90081 90281 0.986584 - . ID=CGI_10007365; scaffold828 WUBlastX LINE_RTE-X 90081 90281 86 + . . scaffold828 GLEAN mRNA 81917 82186 0.986584 - . ID=CGI_10007365; scaffold828 WUBlastX LINE_L1-Tx1 81917 82186 145 - . . scaffold828 GLEAN mRNA 81866 82183 0.986584 - . ID=CGI_10007365; scaffold828 WUBlastX LINE_L1-Tx1 81866 82183 93 - . . scaffold828 GLEAN mRNA 81920 82477 0.986584 - . ID=CGI_10007365; scaffold828 WUBlastX LINE_L1-Tx1 81920 82477 47 - . . scaffold828 GLEAN mRNA 97448 97972 0.999999 - . ID=CGI_10007366; scaffold828 WUBlastX LTR_Gypsy 97448 97972 81 - . . scaffold828 GLEAN mRNA 95908 95973 0.999999 - . ID=CGI_10007366; scaffold828 WUBlastX LTR_Gypsy 95908 95973 32 - . . scaffold828 GLEAN mRNA 96257 97891 0.999999 - . ID=CGI_10007366; scaffold828 WUBlastX LTR_Gypsy 96257 97891 216 - . . scaffold828 GLEAN mRNA 95925 96194 0.999999 - . ID=CGI_10007366; scaffold828 WUBlastX LTR_Copia 95925 96194 62 - . . scaffold828 GLEAN mRNA 95826 96260 0.999999 - . ID=CGI_10007366; scaffold828 WUBlastX LTR_Gypsy 95826 96260 31 - . . scaffold828 GLEAN mRNA 95976 97124 0.999999 - . ID=CGI_10007366; scaffold828 WUBlastX LTR_Gypsy 95976 97124 212 - . . scaffold828 GLEAN mRNA 97448 97891 0.999999 - . ID=CGI_10007366; scaffold828 WUBlastX LTR_Gypsy 97448 97891 222 - . . scaffold828 GLEAN mRNA 99761 100455 0.999999 - . ID=CGI_10007366; scaffold828 TRF Tandem_Repeat 99761 100455 1049 + . . scaffold828 GLEAN mRNA 107537 107753 0.999999 - . ID=CGI_10007366; scaffold828 TRF Tandem_Repeat 107537 107753 208 + . . scaffold828 GLEAN mRNA 159435 159525 0.980372 + . ID=CGI_10007369; scaffold828 TRF Tandem_Repeat 159435 159525 71 + . . scaffold828 GLEAN mRNA 159732 159822 0.980372 + . ID=CGI_10007369; scaffold828 TRF Tandem_Repeat 159732 159822 71 + . . scaffold828 GLEAN mRNA 171714 172358 0.999415 - . ID=CGI_10007370; scaffold828 WUBlastX DNA_TcMar-Fot1 171714 172358 199 - . . scaffold828 GLEAN mRNA 172390 172923 0.999415 - . ID=CGI_10007370; scaffold828 WUBlastX DNA_TcMar-Fot1 172390 172923 149 - . . scaffold828 GLEAN mRNA 171103 171381 0.999415 - . ID=CGI_10007370; scaffold828 WUBlastX DNA_IS4EU 171103 171381 20 - . . scaffold828 GLEAN mRNA 171297 172394 0.999415 - . ID=CGI_10007370; scaffold828 WUBlastX DNA_TcMar-Fot1 171297 172394 158 - . . scaffold42640 GLEAN mRNA 20282 20321 0.479902 + . ID=CGI_10007371; scaffold42640 TRF Tandem_Repeat 20282 20321 71 + . . scaffold42640 GLEAN mRNA 40677 40743 0.999998 - . ID=CGI_10007374; scaffold42640 TRF Tandem_Repeat 40677 40743 89 + . . scaffold42640 GLEAN mRNA 78058 78129 1 + . ID=CGI_10007377; scaffold42640 TRF Tandem_Repeat 78058 78129 121 + . . scaffold42640 GLEAN mRNA 149985 150029 0.993369 - . ID=CGI_10007380; scaffold42640 TRF Tandem_Repeat 149985 150029 90 + . . scaffold42640 GLEAN mRNA 150163 150207 0.993369 - . ID=CGI_10007380; scaffold42640 TRF Tandem_Repeat 150163 150207 90 + . . scaffold42640 GLEAN mRNA 159300 159384 1 + . ID=CGI_10007381; scaffold42640 TRF Tandem_Repeat 159300 159384 83 + . . scaffold42640 GLEAN mRNA 161562 161625 1 + . ID=CGI_10007381; scaffold42640 TRF Tandem_Repeat 161562 161625 128 + . . scaffold42640 GLEAN mRNA 170429 170464 0.999351 + . ID=CGI_10007382; scaffold42640 TRF Tandem_Repeat 170429 170464 72 + . . scaffold42640 GLEAN mRNA 172008 172054 0.999351 + . ID=CGI_10007382; scaffold42640 TRF Tandem_Repeat 172008 172054 94 + . . scaffold42640 GLEAN mRNA 172124 172181 0.999351 + . ID=CGI_10007382; scaffold42640 TRF Tandem_Repeat 172124 172181 107 + . . scaffold42640 GLEAN mRNA 173084 173137 0.999351 + . ID=CGI_10007382; scaffold42640 TRF Tandem_Repeat 173084 173137 65 + . . scaffold42648 GLEAN mRNA 9573 9620 1 + . ID=CGI_10007383; scaffold42648 TRF Tandem_Repeat 9573 9620 51 + . . scaffold42648 GLEAN mRNA 9573 9617 1 + . ID=CGI_10007383; scaffold42648 TRF Tandem_Repeat 9573 9617 72 + . . scaffold42648 GLEAN mRNA 33561 33721 0.999351 + . ID=CGI_10007385; scaffold42648 TRF Tandem_Repeat 33561 33721 77 + . . scaffold42648 GLEAN mRNA 33625 33740 0.999351 + . ID=CGI_10007385; scaffold42648 TRF Tandem_Repeat 33625 33740 187 + . . scaffold42648 GLEAN mRNA 43558 43577 0.648316 - . ID=CGI_10007386; scaffold42648 TRF Tandem_Repeat 43339 43577 167 + . . scaffold42648 GLEAN mRNA 87260 87299 0.999998 - . ID=CGI_10007388; scaffold42648 TRF Tandem_Repeat 87260 87299 80 + . . scaffold42648 GLEAN mRNA 90898 90961 0.999998 - . ID=CGI_10007388; scaffold42648 TRF Tandem_Repeat 90898 90961 87 + . . scaffold42648 GLEAN mRNA 91599 91721 0.999998 - . ID=CGI_10007388; scaffold42648 TRF Tandem_Repeat 91599 91721 131 + . . scaffold42648 GLEAN mRNA 91813 91880 0.999998 - . ID=CGI_10007388; scaffold42648 TRF Tandem_Repeat 91813 91880 82 + . . scaffold42648 GLEAN mRNA 93394 93456 0.999998 - . ID=CGI_10007388; scaffold42648 TRF Tandem_Repeat 93394 93456 62 + . . scaffold42648 GLEAN mRNA 114025 114126 0.999968 - . ID=CGI_10007391; scaffold42648 WUBlastX DNA_Harbinger 114025 114477 233 - . . scaffold42648 GLEAN mRNA 168524 169135 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Gypsy 168524 169135 80 - . . scaffold42648 GLEAN mRNA 172099 172266 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Pao 172099 172266 141 - . . scaffold42648 GLEAN mRNA 173318 174499 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Pao 173318 174499 37 - . . scaffold42648 GLEAN mRNA 172245 172892 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Pao 172245 172892 263 - . . scaffold42648 GLEAN mRNA 172245 172646 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Pao 172245 172646 281 - . . scaffold42648 GLEAN mRNA 170554 171708 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Pao 170554 171708 785 - . . scaffold42648 GLEAN mRNA 172892 174289 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Pao 172892 174289 686 - . . scaffold42648 GLEAN mRNA 170554 172209 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Pao 170554 172209 443 - . . scaffold42648 GLEAN mRNA 169155 169784 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Gypsy 169155 169784 244 - . . scaffold42648 GLEAN mRNA 168725 169135 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Gypsy-Cigr 168725 169135 236 - . . scaffold42648 GLEAN mRNA 168626 169135 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Gypsy 168626 169135 98 - . . scaffold42648 GLEAN mRNA 170521 170718 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Pao 170521 170718 94 - . . scaffold42648 GLEAN mRNA 169155 169568 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Gypsy 169155 169568 409 - . . scaffold42648 GLEAN mRNA 170105 170170 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Pao 170105 170170 21 - . . scaffold1524 GLEAN mRNA 66549 66590 0.999999 + . ID=CGI_10007401; scaffold1524 TRF Tandem_Repeat 66549 66590 75 + . . scaffold670 GLEAN mRNA 1029 1847 0.999481 - . ID=CGI_10007406; scaffold670 TRF Tandem_Repeat 1029 1847 930 + . . scaffold670 GLEAN mRNA 25479 26354 1 + . ID=CGI_10007407; scaffold670 TRF Tandem_Repeat 25479 26354 722 + . . scaffold670 GLEAN mRNA 25482 26246 1 + . ID=CGI_10007407; scaffold670 TRF Tandem_Repeat 25482 26246 740 + . . scaffold670 GLEAN mRNA 25536 26320 1 + . ID=CGI_10007407; scaffold670 TRF Tandem_Repeat 25536 26320 909 + . . scaffold670 GLEAN mRNA 41988 42015 0.999673 - . ID=CGI_10007408; scaffold670 TRF Tandem_Repeat 41988 42015 56 + . . scaffold670 GLEAN mRNA 41988 42015 0.55783 + . ID=CGI_10007409; scaffold670 TRF Tandem_Repeat 41988 42015 56 + . . scaffold670 GLEAN mRNA 129513 129546 0.999932 + . ID=CGI_10007410; scaffold670 TRF Tandem_Repeat 129513 129546 61 + . . scaffold670 GLEAN mRNA 131774 131810 0.999932 + . ID=CGI_10007410; scaffold670 TRF Tandem_Repeat 131774 131810 74 + . . scaffold670 GLEAN mRNA 134285 134710 0.999932 + . ID=CGI_10007410; scaffold670 WUBlastX LINE_CR1-L2 134285 134710 70 + . . scaffold670 GLEAN mRNA 134387 134704 0.999932 + . ID=CGI_10007410; scaffold670 WUBlastX LINE_CR1-L2 134387 134704 94 + . . scaffold670 GLEAN mRNA 139982 140038 1 + . ID=CGI_10007411; scaffold670 TRF Tandem_Repeat 139982 140038 107 + . . scaffold42656 GLEAN mRNA 65017 65064 1 - . ID=CGI_10007413; scaffold42656 TRF Tandem_Repeat 65017 65064 96 + . . scaffold42656 GLEAN mRNA 64408 64662 1 - . ID=CGI_10007413; scaffold42656 WUBlastX LINE_L1-Tx1 64408 64662 82 - . . scaffold42656 GLEAN mRNA 62604 62951 1 - . ID=CGI_10007413; scaffold42656 WUBlastX LINE_L1-Tx1 62604 62951 38 - . . scaffold42656 GLEAN mRNA 63248 63796 1 - . ID=CGI_10007413; scaffold42656 WUBlastX LINE_L1-Tx1 63248 63796 119 - . . scaffold42656 GLEAN mRNA 63780 63860 1 - . ID=CGI_10007413; scaffold42656 WUBlastX LINE_L1-Tx1 63780 63860 25 - . . scaffold42656 GLEAN mRNA 62733 62993 1 - . ID=CGI_10007413; scaffold42656 WUBlastX LINE_L1-Tx1 62733 62993 40 - . . scaffold42656 GLEAN mRNA 100474 101340 1 - . ID=CGI_10007415; scaffold42656 WUBlastX LINE_L1-Tx1 100474 101340 70 + . . scaffold42656 GLEAN mRNA 99827 100378 1 - . ID=CGI_10007415; scaffold42656 WUBlastX LINE_L1-Tx1 99827 100378 246 + . . scaffold42656 GLEAN mRNA 99827 100510 1 - . ID=CGI_10007415; scaffold42656 WUBlastX LINE_L1 99827 100510 223 + . . scaffold42656 GLEAN mRNA 113806 113855 1 - . ID=CGI_10007417; scaffold42656 TRF Tandem_Repeat 113806 113855 100 + . . scaffold42656 GLEAN mRNA 168729 168771 0.417801 - . ID=CGI_10007419; scaffold42656 TRF Tandem_Repeat 168729 168771 77 + . . scaffold42656 GLEAN mRNA 170111 171339 0.417801 - . ID=CGI_10007419; scaffold42656 TRF Tandem_Repeat 170111 171339 1639 + . . scaffold42656 GLEAN mRNA 172547 172588 0.417801 - . ID=CGI_10007419; scaffold42656 TRF Tandem_Repeat 172547 172588 59 + . . scaffold42656 GLEAN mRNA 174935 176428 0.417801 - . ID=CGI_10007419; scaffold42656 TRF Tandem_Repeat 174935 176428 1436 + . . scaffold42656 GLEAN mRNA 174928 176428 0.417801 - . ID=CGI_10007419; scaffold42656 TRF Tandem_Repeat 174928 176428 1536 + . . scaffold42656 GLEAN mRNA 174935 176428 0.417801 - . ID=CGI_10007419; scaffold42656 TRF Tandem_Repeat 174935 176428 1610 + . . scaffold42656 GLEAN mRNA 167056 167313 0.417801 - . ID=CGI_10007419; scaffold42656 WUBlastX DNA_Harbinger 167056 167313 56 + . . scaffold1638 GLEAN mRNA 67884 67926 1 + . ID=CGI_10007421; scaffold1638 TRF Tandem_Repeat 67884 67926 86 + . . scaffold1638 GLEAN mRNA 76304 76342 0.999996 - . ID=CGI_10007422; scaffold1638 TRF Tandem_Repeat 76304 76342 78 + . . scaffold1638 GLEAN mRNA 79813 79865 0.999996 - . ID=CGI_10007422; scaffold1638 TRF Tandem_Repeat 79813 79865 92 + . . scaffold1638 GLEAN mRNA 129138 129665 0.999676 + . ID=CGI_10007425; scaffold1638 WUBlastX LTR_Gypsy 129138 129665 25 + . . scaffold1638 GLEAN mRNA 131145 131672 0.999984 + . ID=CGI_10007426; scaffold1638 WUBlastX LTR_Gypsy 131145 131672 25 + . . scaffold170 GLEAN mRNA 17169 17201 0.558378 + . ID=CGI_10007430; scaffold170 TRF Tandem_Repeat 17169 17201 57 + . . scaffold170 GLEAN mRNA 17520 18370 0.558378 + . ID=CGI_10007430; scaffold170 TRF Tandem_Repeat 17520 18370 1341 + . . scaffold170 GLEAN mRNA 25731 25788 0.558378 + . ID=CGI_10007430; scaffold170 TRF Tandem_Repeat 25731 25788 98 + . . scaffold170 GLEAN mRNA 57872 57918 0.952643 - . ID=CGI_10007431; scaffold170 TRF Tandem_Repeat 57872 57918 94 + . . scaffold170 GLEAN mRNA 69821 69849 0.952643 - . ID=CGI_10007431; scaffold170 TRF Tandem_Repeat 69821 69849 58 + . . scaffold170 GLEAN mRNA 71601 71653 0.952643 - . ID=CGI_10007431; scaffold170 TRF Tandem_Repeat 71601 71653 61 + . . scaffold170 GLEAN mRNA 69232 69495 0.952643 - . ID=CGI_10007431; scaffold170 WUBlastX DNA_MuDR 69232 69495 58 - . . scaffold170 GLEAN mRNA 84920 85047 0.728463 - . ID=CGI_10007434; scaffold170 TRF Tandem_Repeat 84920 85047 114 + . . scaffold170 GLEAN mRNA 84974 85097 0.728463 - . ID=CGI_10007434; scaffold170 TRF Tandem_Repeat 84974 85097 73 + . . scaffold42674 GLEAN mRNA 41461 41485 0.991247 + . ID=CGI_10007438; scaffold42674 TRF Tandem_Repeat 41461 41485 50 + . . scaffold42674 GLEAN mRNA 55225 56189 1 + . ID=CGI_10007440; scaffold42674 TRF Tandem_Repeat 55225 56189 1587 + . . scaffold42674 GLEAN mRNA 58013 58136 1 + . ID=CGI_10007440; scaffold42674 TRF Tandem_Repeat 58013 58136 166 + . . scaffold42674 GLEAN mRNA 76604 76647 0.488756 + . ID=CGI_10007441; scaffold42674 TRF Tandem_Repeat 76604 76647 88 + . . scaffold42674 GLEAN mRNA 89208 89600 0.488756 + . ID=CGI_10007441; scaffold42674 WUBlastX LINE_L1-Tx1 89208 89600 73 + . . scaffold42674 GLEAN mRNA 88754 89440 0.488756 + . ID=CGI_10007441; scaffold42674 WUBlastX LINE_L1-Tx1 88754 89440 319 + . . scaffold42674 GLEAN mRNA 88622 89416 0.488756 + . ID=CGI_10007441; scaffold42674 WUBlastX LINE_L1-Tx1 88622 89416 168 + . . scaffold42674 GLEAN mRNA 89427 89645 0.488756 + . ID=CGI_10007441; scaffold42674 WUBlastX LINE_L1 89427 89645 45 + . . scaffold42674 GLEAN mRNA 107300 107457 0.998989 - . ID=CGI_10007442; scaffold42674 TRF Tandem_Repeat 107300 107457 246 + . . scaffold42674 GLEAN mRNA 129070 129119 1 - . ID=CGI_10007444; scaffold42674 TRF Tandem_Repeat 129070 129119 100 + . . scaffold42674 GLEAN mRNA 131923 131978 1 - . ID=CGI_10007444; scaffold42674 TRF Tandem_Repeat 131923 131978 112 + . . scaffold42674 GLEAN mRNA 142406 142450 1 - . ID=CGI_10007447; scaffold42674 TRF Tandem_Repeat 142406 142450 90 + . . scaffold42674 GLEAN mRNA 178767 178979 0.544647 + . ID=CGI_10007448; scaffold42674 WUBlastX LINE_RTE-X 178767 178979 20 + . . scaffold42674 GLEAN mRNA 175725 176180 0.544647 + . ID=CGI_10007448; scaffold42674 WUBlastX LINE_RTE-X 175725 176180 287 - . . scaffold42674 GLEAN mRNA 173170 173325 0.544647 + . ID=CGI_10007448; scaffold42674 WUBlastX LINE_RTE-X 173170 173325 41 - . . scaffold42674 GLEAN mRNA 177974 178741 0.544647 + . ID=CGI_10007448; scaffold42674 WUBlastX LINE_RTE-X 177974 178741 206 + . . scaffold42674 GLEAN mRNA 172423 173298 0.544647 + . ID=CGI_10007448; scaffold42674 WUBlastX LINE_RTE-X 172423 173298 112 - . . scaffold42674 GLEAN mRNA 172558 173247 0.544647 + . ID=CGI_10007448; scaffold42674 WUBlastX LINE_RTE-X 172558 173247 266 - . . scaffold42674 GLEAN mRNA 175716 176267 0.544647 + . ID=CGI_10007448; scaffold42674 WUBlastX LINE_RTE-BovB 175716 176267 49 - . . scaffold42662 GLEAN mRNA 283 342 1 - . ID=CGI_10007449; scaffold42662 TRF Tandem_Repeat 1 342 585 + . . scaffold42662 GLEAN mRNA 2179 2236 1 - . ID=CGI_10007449; scaffold42662 TRF Tandem_Repeat 2179 2236 116 + . . scaffold42662 GLEAN mRNA 29847 29871 0.998868 + . ID=CGI_10007454; scaffold42662 TRF Tandem_Repeat 29847 29871 50 + . . scaffold42662 GLEAN mRNA 36754 36904 0.998868 + . ID=CGI_10007454; scaffold42662 TRF Tandem_Repeat 36754 36904 225 + . . scaffold42662 GLEAN mRNA 36929 37107 0.998868 + . ID=CGI_10007454; scaffold42662 TRF Tandem_Repeat 36929 37107 261 + . . scaffold42662 GLEAN mRNA 49057 49102 0.492762 - . ID=CGI_10007455; scaffold42662 TRF Tandem_Repeat 49057 49102 65 + . . scaffold42662 GLEAN mRNA 128186 128320 1 - . ID=CGI_10007460; scaffold42662 TRF Tandem_Repeat 128186 128320 157 + . . scaffold42662 GLEAN mRNA 167340 167393 0.999913 + . ID=CGI_10007463; scaffold42662 TRF Tandem_Repeat 167340 167393 108 + . . scaffold42662 GLEAN mRNA 169512 169555 0.999913 + . ID=CGI_10007463; scaffold42662 TRF Tandem_Repeat 169512 169555 72 + . . scaffold42662 GLEAN mRNA 169895 169938 0.999913 + . ID=CGI_10007463; scaffold42662 TRF Tandem_Repeat 169895 169938 88 + . . scaffold42662 GLEAN mRNA 170003 170049 0.999913 + . ID=CGI_10007463; scaffold42662 TRF Tandem_Repeat 170003 170049 85 + . . scaffold1705 GLEAN mRNA 18915 18997 0.996603 + . ID=CGI_10007464; scaffold1705 TRF Tandem_Repeat 18915 18997 166 + . . scaffold1705 GLEAN mRNA 23664 23718 0.996603 + . ID=CGI_10007464; scaffold1705 TRF Tandem_Repeat 23664 23718 110 + . . scaffold1705 GLEAN mRNA 25469 25510 0.996603 + . ID=CGI_10007464; scaffold1705 TRF Tandem_Repeat 25469 25510 84 + . . scaffold1705 GLEAN mRNA 39217 39467 1 - . ID=CGI_10007465; scaffold1705 TRF Tandem_Repeat 39217 39467 430 + . . scaffold1705 GLEAN mRNA 41958 41989 0.999999 - . ID=CGI_10007466; scaffold1705 TRF Tandem_Repeat 41958 41989 64 + . . scaffold1705 GLEAN mRNA 42543 42750 0.999999 - . ID=CGI_10007466; scaffold1705 TRF Tandem_Repeat 42543 42750 134 + . . scaffold1705 GLEAN mRNA 62370 62443 0.999997 - . ID=CGI_10007467; scaffold1705 TRF Tandem_Repeat 62370 62443 59 + . . scaffold1705 GLEAN mRNA 70519 70571 0.343232 + . ID=CGI_10007468; scaffold1705 TRF Tandem_Repeat 70519 70571 97 + . . scaffold1705 GLEAN mRNA 72724 72755 0.343232 + . ID=CGI_10007468; scaffold1705 TRF Tandem_Repeat 72724 72755 64 + . . scaffold1705 GLEAN mRNA 86998 87053 0.343232 + . ID=CGI_10007468; scaffold1705 TRF Tandem_Repeat 86998 87053 112 + . . scaffold1705 GLEAN mRNA 87193 87283 0.343232 + . ID=CGI_10007468; scaffold1705 TRF Tandem_Repeat 87193 87283 182 + . . scaffold1705 GLEAN mRNA 94478 95860 0.343232 + . ID=CGI_10007468; scaffold1705 WUBlastX LTR_Gypsy 94478 95860 94 - . . scaffold1705 GLEAN mRNA 91115 92638 0.343232 + . ID=CGI_10007468; scaffold1705 WUBlastX LTR_Gypsy-Cigr 91115 92638 822 - . . scaffold1705 GLEAN mRNA 91067 91141 0.343232 + . ID=CGI_10007468; scaffold1705 WUBlastX LTR_Copia 91067 91141 20 - . . scaffold1705 GLEAN mRNA 95273 95989 0.343232 + . ID=CGI_10007468; scaffold1705 WUBlastX LTR_Gypsy 95273 95989 46 - . . scaffold1705 GLEAN mRNA 94904 95674 0.343232 + . ID=CGI_10007468; scaffold1705 WUBlastX LTR_Gypsy 94904 95674 171 - . . scaffold1705 GLEAN mRNA 96786 98054 0.343232 + . ID=CGI_10007468; scaffold1705 WUBlastX LTR_Gypsy-Cigr 96786 98054 712 + . . scaffold1705 GLEAN mRNA 96747 96947 0.343232 + . ID=CGI_10007468; scaffold1705 WUBlastX LTR_Gypsy 96747 96947 72 + . . scaffold1705 GLEAN mRNA 91481 94249 0.343232 + . ID=CGI_10007468; scaffold1705 WUBlastX LTR_Gypsy 91481 94249 2036 - . . scaffold1705 GLEAN mRNA 91376 94810 0.343232 + . ID=CGI_10007468; scaffold1705 WUBlastX LTR_Gypsy 91376 94810 1925 - . . scaffold1705 GLEAN mRNA 99602 99725 0.343232 + . ID=CGI_10007468; scaffold1705 TRF Tandem_Repeat 99602 99725 81 + . . scaffold1705 GLEAN mRNA 80165 83153 0.343232 + . ID=CGI_10007468; scaffold1705 TRF Tandem_Repeat 80165 83153 3661 + . . scaffold1705 GLEAN mRNA 97738 98613 0.343232 + . ID=CGI_10007468; scaffold1705 WUBlastX LTR_Gypsy 97738 98613 89 + . . scaffold1705 GLEAN mRNA 98101 98499 0.343232 + . ID=CGI_10007468; scaffold1705 WUBlastX LTR_Gypsy-Cigr 98101 98499 166 + . . scaffold1705 GLEAN mRNA 72724 72755 0.999676 - . ID=CGI_10007469; scaffold1705 TRF Tandem_Repeat 72724 72755 64 + . . scaffold1705 GLEAN mRNA 121657 122031 0.866433 - . ID=CGI_10007472; scaffold1705 WUBlastX LTR_Gypsy-Troyk 121528 122148 188 - . . scaffold1705 GLEAN mRNA 166679 166714 1 + . ID=CGI_10007473; scaffold1705 TRF Tandem_Repeat 166679 166714 54 + . . scaffold1705 GLEAN mRNA 178119 178283 0.810172 - . ID=CGI_10007474; scaffold1705 WUBlastX LINE_RTE-BovB 178119 178283 113 + . . scaffold1705 GLEAN mRNA 177890 178147 0.810172 - . ID=CGI_10007474; scaffold1705 WUBlastX LINE_RTE-BovB 177890 178147 79 + . . scaffold42684 GLEAN mRNA 13986 14010 0.999907 + . ID=CGI_10007476; scaffold42684 TRF Tandem_Repeat 13986 14010 50 + . . scaffold42684 GLEAN mRNA 16716 16741 0.999907 + . ID=CGI_10007476; scaffold42684 TRF Tandem_Repeat 16716 16741 52 + . . scaffold42684 GLEAN mRNA 23450 23492 0.999999 - . ID=CGI_10007477; scaffold42684 TRF Tandem_Repeat 23450 23492 86 + . . scaffold42684 GLEAN mRNA 23668 23703 0.999999 - . ID=CGI_10007477; scaffold42684 TRF Tandem_Repeat 23668 23703 72 + . . scaffold42684 GLEAN mRNA 82635 82719 0.996563 + . ID=CGI_10007481; scaffold42684 TRF Tandem_Repeat 82635 82719 84 + . . scaffold42684 GLEAN mRNA 82629 82717 0.996563 + . ID=CGI_10007481; scaffold42684 TRF Tandem_Repeat 82629 82717 81 + . . scaffold42684 GLEAN mRNA 112664 113369 0.999676 + . ID=CGI_10007483; scaffold42684 TRF Tandem_Repeat 112664 113369 1130 + . . scaffold42684 GLEAN mRNA 152111 152468 0.909301 + . ID=CGI_10007485; scaffold42684 TRF Tandem_Repeat 152111 152468 217 + . . scaffold42684 GLEAN mRNA 177979 178188 0.86189 + . ID=CGI_10007488; scaffold42684 TRF Tandem_Repeat 177979 178188 330 + . . scaffold42684 GLEAN mRNA 179422 179588 0.86189 + . ID=CGI_10007488; scaffold42684 TRF Tandem_Repeat 179422 179588 128 + . . scaffold42684 GLEAN mRNA 179398 179597 0.86189 + . ID=CGI_10007488; scaffold42684 TRF Tandem_Repeat 179398 179597 283 + . . scaffold42684 GLEAN mRNA 181026 181278 0.86189 + . ID=CGI_10007488; scaffold42684 TRF Tandem_Repeat 181026 181278 164 + . . scaffold42684 GLEAN mRNA 181026 181279 0.86189 + . ID=CGI_10007488; scaffold42684 TRF Tandem_Repeat 181026 181279 235 + . . scaffold870 GLEAN mRNA 47456 47710 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 47456 47710 102 + . . scaffold870 GLEAN mRNA 48117 48317 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 48117 48317 143 + . . scaffold870 GLEAN mRNA 48777 48923 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 48777 48923 73 + . . scaffold870 GLEAN mRNA 48506 48700 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 48506 48700 57 + . . scaffold870 GLEAN mRNA 47739 47879 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 47739 47879 61 + . . scaffold870 GLEAN mRNA 48885 49019 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 48885 49019 20 + . . scaffold870 GLEAN mRNA 49379 49433 0.999949 + . ID=CGI_10007493; scaffold870 TRF Tandem_Repeat 49379 49433 110 + . . scaffold870 GLEAN mRNA 52423 52791 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 52423 52791 195 + . . scaffold870 GLEAN mRNA 49901 50056 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 49901 50056 52 + . . scaffold870 GLEAN mRNA 49162 49272 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 49162 49272 46 + . . scaffold870 GLEAN mRNA 49590 49703 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 49590 49703 79 + . . scaffold870 GLEAN mRNA 49117 49275 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 49117 49275 38 + . . scaffold870 GLEAN mRNA 140599 141330 0.423462 + . ID=CGI_10007496; scaffold870 WUBlastX LTR_Gypsy 140599 141330 267 - . . scaffold870 GLEAN mRNA 140458 141402 0.423462 + . ID=CGI_10007496; scaffold870 WUBlastX LTR_Gypsy 140458 141402 223 - . . scaffold870 GLEAN mRNA 149909 149933 0.423462 + . ID=CGI_10007496; scaffold870 TRF Tandem_Repeat 149909 149933 50 + . . scaffold870 GLEAN mRNA 154255 154300 0.423462 + . ID=CGI_10007496; scaffold870 TRF Tandem_Repeat 154255 154300 76 + . . scaffold870 GLEAN mRNA 154250 154303 0.423462 + . ID=CGI_10007496; scaffold870 TRF Tandem_Repeat 154250 154303 76 + . . scaffold870 GLEAN mRNA 155651 155694 0.423462 + . ID=CGI_10007496; scaffold870 TRF Tandem_Repeat 155651 155694 88 + . . scaffold870 GLEAN mRNA 160754 160800 0.423462 + . ID=CGI_10007496; scaffold870 TRF Tandem_Repeat 160754 160800 94 + . . scaffold870 GLEAN mRNA 162876 162931 0.423462 + . ID=CGI_10007496; scaffold870 TRF Tandem_Repeat 162876 162931 112 + . . scaffold992 GLEAN mRNA 17159 17212 0.967342 + . ID=CGI_10007502; scaffold992 TRF Tandem_Repeat 17159 17212 99 + . . scaffold992 GLEAN mRNA 19755 20267 0.967342 + . ID=CGI_10007502; scaffold992 WUBlastX LINE_I-Nimb 19755 20267 38 + . . scaffold992 GLEAN mRNA 32497 32706 0.937041 - . ID=CGI_10007504; scaffold992 WUBlastX LINE_RTE-X 32497 32706 108 + . . scaffold992 GLEAN mRNA 32455 32685 0.937041 - . ID=CGI_10007504; scaffold992 WUBlastX LINE_RTE-X 32455 32685 65 + . . scaffold992 GLEAN mRNA 36575 36955 0.937041 - . ID=CGI_10007504; scaffold992 TRF Tandem_Repeat 36575 36955 539 + . . scaffold992 GLEAN mRNA 42157 42192 0.937041 - . ID=CGI_10007504; scaffold992 TRF Tandem_Repeat 42157 42192 54 + . . scaffold992 GLEAN mRNA 32524 32829 0.937041 - . ID=CGI_10007504; scaffold992 WUBlastX LINE_RTE-X 32524 32829 23 + . . scaffold992 GLEAN mRNA 62439 63005 0.654733 - . ID=CGI_10007507; scaffold992 TRF Tandem_Repeat 62439 63005 598 + . . scaffold992 GLEAN mRNA 63166 63466 0.654733 - . ID=CGI_10007507; scaffold992 TRF Tandem_Repeat 63166 63466 235 + . . scaffold992 GLEAN mRNA 89186 89252 0.895342 + . ID=CGI_10007508; scaffold992 TRF Tandem_Repeat 89186 89252 134 + . . scaffold992 GLEAN mRNA 92862 93773 0.895342 + . ID=CGI_10007508; scaffold992 TRF Tandem_Repeat 92862 93773 1161 + . . scaffold992 GLEAN mRNA 93155 93773 0.895342 + . ID=CGI_10007508; scaffold992 TRF Tandem_Repeat 93155 93773 981 + . . scaffold992 GLEAN mRNA 93155 93773 0.895342 + . ID=CGI_10007508; scaffold992 TRF Tandem_Repeat 93155 93773 990 + . . scaffold992 GLEAN mRNA 115081 115108 0.999411 - . ID=CGI_10007510; scaffold992 TRF Tandem_Repeat 115081 115108 56 + . . scaffold992 GLEAN mRNA 115106 115130 0.999411 - . ID=CGI_10007510; scaffold992 TRF Tandem_Repeat 115106 115130 50 + . . scaffold992 GLEAN mRNA 116291 116421 0.999411 - . ID=CGI_10007510; scaffold992 TRF Tandem_Repeat 116291 116421 129 + . . scaffold992 GLEAN mRNA 116246 116385 0.999411 - . ID=CGI_10007510; scaffold992 TRF Tandem_Repeat 116246 116385 128 + . . scaffold992 GLEAN mRNA 125741 125971 0.999411 - . ID=CGI_10007510; scaffold992 TRF Tandem_Repeat 125741 125971 270 + . . scaffold992 GLEAN mRNA 125741 125971 0.999411 - . ID=CGI_10007510; scaffold992 TRF Tandem_Repeat 125741 125971 331 + . . scaffold992 GLEAN mRNA 126822 127047 0.999411 - . ID=CGI_10007510; scaffold992 TRF Tandem_Repeat 126822 127047 193 + . . scaffold992 GLEAN mRNA 156312 156343 0.999998 + . ID=CGI_10007514; scaffold992 TRF Tandem_Repeat 156312 156343 55 + . . scaffold1646 GLEAN mRNA 61073 61144 0.32768 - . ID=CGI_10007519; scaffold1646 TRF Tandem_Repeat 61073 61144 101 + . . scaffold1625 GLEAN mRNA 51548 51767 1 + . ID=CGI_10007528; scaffold1625 TRF Tandem_Repeat 51548 51767 368 + . . scaffold1625 GLEAN mRNA 51950 52263 1 + . ID=CGI_10007528; scaffold1625 TRF Tandem_Repeat 51950 52263 171 + . . scaffold1625 GLEAN mRNA 52039 52659 1 + . ID=CGI_10007528; scaffold1625 TRF Tandem_Repeat 52039 52659 394 + . . scaffold1625 GLEAN mRNA 52276 52564 1 + . ID=CGI_10007528; scaffold1625 TRF Tandem_Repeat 52276 52564 200 + . . scaffold1625 GLEAN mRNA 52546 52681 1 + . ID=CGI_10007528; scaffold1625 TRF Tandem_Repeat 52546 52681 202 + . . scaffold1625 GLEAN mRNA 154987 155445 0.999064 - . ID=CGI_10007531; scaffold1625 WUBlastX LTR_Gypsy-Cigr 154987 155445 70 - . . scaffold1625 GLEAN mRNA 154798 155040 0.999064 - . ID=CGI_10007531; scaffold1625 WUBlastX LTR_Copia 154798 155040 43 - . . scaffold1625 GLEAN mRNA 169501 169567 0.999993 - . ID=CGI_10007533; scaffold1625 TRF Tandem_Repeat 169501 169567 116 + . . scaffold1625 GLEAN mRNA 169606 169696 0.999993 - . ID=CGI_10007533; scaffold1625 TRF Tandem_Repeat 169606 169696 141 + . . scaffold1625 GLEAN mRNA 170269 170391 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 170269 170391 40 - . . scaffold1625 GLEAN mRNA 169785 170144 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 169785 170144 40 - . . scaffold1625 GLEAN mRNA 169773 170072 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 169773 170072 54 - . . scaffold1625 GLEAN mRNA 170448 170879 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 170448 170879 189 - . . scaffold1625 GLEAN mRNA 171968 172018 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 171968 172018 28 - . . scaffold1625 GLEAN mRNA 170379 170801 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 170379 170801 71 - . . scaffold1625 GLEAN mRNA 171688 171828 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 171688 171828 34 - . . scaffold1625 GLEAN mRNA 170255 170308 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 170255 170308 39 - . . scaffold1625 GLEAN mRNA 165742 166722 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX DNA_TcMar-Tc1 165742 166722 416 - . . scaffold1625 GLEAN mRNA 170191 170367 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 170191 170367 20 - . . scaffold1625 GLEAN mRNA 169737 169952 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 169737 169952 26 - . . scaffold1625 GLEAN mRNA 170448 171479 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX LINE_RTE-X 170448 171479 57 - . . scaffold42704 GLEAN mRNA 17806 17838 0.358102 + . ID=CGI_10007536; scaffold42704 TRF Tandem_Repeat 17806 17838 59 + . . scaffold42704 GLEAN mRNA 18816 18875 0.358102 + . ID=CGI_10007536; scaffold42704 TRF Tandem_Repeat 18816 18875 113 + . . scaffold42704 GLEAN mRNA 39757 40085 1 - . ID=CGI_10007538; scaffold42704 TRF Tandem_Repeat 39757 40085 383 + . . scaffold314 GLEAN mRNA 59680 59745 0.999669 + . ID=CGI_10007542; scaffold314 TRF Tandem_Repeat 59680 59745 132 + . . scaffold314 GLEAN mRNA 65373 65410 0.999669 + . ID=CGI_10007542; scaffold314 TRF Tandem_Repeat 65373 65410 76 + . . scaffold314 GLEAN mRNA 85865 86634 0.491167 - . ID=CGI_10007543; scaffold314 TRF Tandem_Repeat 85865 86634 1004 + . . scaffold314 GLEAN mRNA 101231 102177 0.996071 - . ID=CGI_10007544; scaffold314 TRF Tandem_Repeat 101231 102177 1316 + . . scaffold314 GLEAN mRNA 102311 102340 0.996071 - . ID=CGI_10007544; scaffold314 TRF Tandem_Repeat 102311 102340 51 + . . scaffold314 GLEAN mRNA 178552 179052 0.777732 + . ID=CGI_10007548; scaffold314 TRF Tandem_Repeat 178552 179052 306 + . . scaffold213 GLEAN mRNA 8305 8560 0.3911 - . ID=CGI_10007550; scaffold213 TRF Tandem_Repeat 8305 8560 311 + . . scaffold213 GLEAN mRNA 16986 17010 0.3911 - . ID=CGI_10007550; scaffold213 TRF Tandem_Repeat 16986 17010 50 + . . scaffold213 GLEAN mRNA 19552 19596 0.3911 - . ID=CGI_10007550; scaffold213 TRF Tandem_Repeat 19552 19596 90 + . . scaffold213 GLEAN mRNA 20628 20713 0.3911 - . ID=CGI_10007550; scaffold213 TRF Tandem_Repeat 20628 20713 172 + . . scaffold213 GLEAN mRNA 21551 21840 0.3911 - . ID=CGI_10007550; scaffold213 TRF Tandem_Repeat 21551 21840 159 + . . scaffold213 GLEAN mRNA 21667 21832 0.3911 - . ID=CGI_10007550; scaffold213 TRF Tandem_Repeat 21667 21832 273 + . . scaffold213 GLEAN mRNA 21653 21846 0.3911 - . ID=CGI_10007550; scaffold213 TRF Tandem_Repeat 21653 21846 78 + . . scaffold213 GLEAN mRNA 23277 23407 0.3911 - . ID=CGI_10007550; scaffold213 TRF Tandem_Repeat 23277 23407 88 + . . scaffold213 GLEAN mRNA 23212 23382 0.3911 - . ID=CGI_10007550; scaffold213 TRF Tandem_Repeat 23212 23382 127 + . . scaffold213 GLEAN mRNA 24597 24846 0.3911 - . ID=CGI_10007550; scaffold213 TRF Tandem_Repeat 24597 24846 369 + . . scaffold213 GLEAN mRNA 32065 32101 0.3911 - . ID=CGI_10007550; scaffold213 TRF Tandem_Repeat 32065 32101 65 + . . scaffold213 GLEAN mRNA 44965 46059 0.707949 + . ID=CGI_10007551; scaffold213 TRF Tandem_Repeat 44965 46059 1530 + . . scaffold213 GLEAN mRNA 46264 46308 0.707949 + . ID=CGI_10007551; scaffold213 TRF Tandem_Repeat 46264 46308 72 + . . scaffold213 GLEAN mRNA 53023 53089 0.707949 + . ID=CGI_10007551; scaffold213 TRF Tandem_Repeat 53023 53089 134 + . . scaffold213 GLEAN mRNA 56631 56688 0.707949 + . ID=CGI_10007551; scaffold213 TRF Tandem_Repeat 56631 56688 91 + . . scaffold213 GLEAN mRNA 59234 59274 0.707949 + . ID=CGI_10007551; scaffold213 TRF Tandem_Repeat 59234 59274 82 + . . scaffold213 GLEAN mRNA 168001 168036 0.877289 - . ID=CGI_10007552; scaffold213 TRF Tandem_Repeat 168001 168036 54 + . . scaffold213 GLEAN mRNA 174318 174628 0.877289 - . ID=CGI_10007552; scaffold213 TRF Tandem_Repeat 174318 174628 209 + . . scaffold213 GLEAN mRNA 175921 176052 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_TcMar-Tc1 175921 176052 80 - . . scaffold213 GLEAN mRNA 176097 176726 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_TcMar-Tc1 176097 176726 222 - . . scaffold213 GLEAN mRNA 172887 173165 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 172887 173165 119 - . . scaffold213 GLEAN mRNA 171846 172484 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 171846 172484 100 - . . scaffold213 GLEAN mRNA 169221 169460 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_hAT-Tip100 169221 169460 152 + . . scaffold213 GLEAN mRNA 169465 169827 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_hAT-Tip100 169465 169827 162 + . . scaffold213 GLEAN mRNA 169866 170030 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_hAT-Tip100 169866 170030 87 + . . scaffold213 GLEAN mRNA 170041 170355 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 170041 170355 133 - . . scaffold213 GLEAN mRNA 170357 170542 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 170357 170542 158 - . . scaffold213 GLEAN mRNA 170565 170981 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 170565 170981 326 - . . scaffold213 GLEAN mRNA 170998 171831 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 170998 171831 614 - . . scaffold213 GLEAN mRNA 172213 172881 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 172213 172881 91 - . . scaffold213 GLEAN mRNA 171846 172214 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_Maverick 171846 172214 189 - . . scaffold213 GLEAN mRNA 176046 176096 0.877289 - . ID=CGI_10007552; scaffold213 WUBlastX DNA_TcMar-Tc1 176046 176096 48 - . . scaffold1810 GLEAN mRNA 7444 7536 0.979898 + . ID=CGI_10007553; scaffold1810 WUBlastX DNA_Sola 7444 7536 20 + . . scaffold1810 GLEAN mRNA 8123 8248 0.979898 + . ID=CGI_10007553; scaffold1810 WUBlastX DNA_Sola 8123 8248 86 + . . scaffold1810 GLEAN mRNA 13683 13841 1 - . ID=CGI_10007554; scaffold1810 WUBlastX DNA_Harbinger 13683 13898 65 - . . scaffold1810 GLEAN mRNA 21543 21630 0.837152 - . ID=CGI_10007555; scaffold1810 TRF Tandem_Repeat 21543 21630 115 + . . scaffold1810 GLEAN mRNA 30983 31146 0.667672 + . ID=CGI_10007556; scaffold1810 TRF Tandem_Repeat 30983 31146 89 + . . scaffold1810 GLEAN mRNA 35404 35715 0.59015 + . ID=CGI_10007557; scaffold1810 WUBlastX LINE_Proto2 35404 35715 88 + . . scaffold1810 GLEAN mRNA 73614 73847 0.893433 + . ID=CGI_10007558; scaffold1810 TRF Tandem_Repeat 73614 73847 161 + . . scaffold1810 GLEAN mRNA 73668 73971 0.893433 + . ID=CGI_10007558; scaffold1810 TRF Tandem_Repeat 73668 73971 179 + . . scaffold1810 GLEAN mRNA 144911 145747 1 + . ID=CGI_10007560; scaffold1810 TRF Tandem_Repeat 144911 145747 977 + . . scaffold42726 GLEAN mRNA 4948 5036 0.648556 - . ID=CGI_10007566; scaffold42726 TRF Tandem_Repeat 4948 5036 65 + . . scaffold42726 GLEAN mRNA 5861 5933 0.648556 - . ID=CGI_10007566; scaffold42726 TRF Tandem_Repeat 5861 5933 146 + . . scaffold42726 GLEAN mRNA 6222 6516 0.648556 - . ID=CGI_10007566; scaffold42726 TRF Tandem_Repeat 6222 6516 373 + . . scaffold42726 GLEAN mRNA 8298 8925 0.648556 - . ID=CGI_10007566; scaffold42726 TRF Tandem_Repeat 8298 8925 897 + . . scaffold42726 GLEAN mRNA 13436 13493 0.648556 - . ID=CGI_10007566; scaffold42726 TRF Tandem_Repeat 13436 13493 116 + . . scaffold42726 GLEAN mRNA 21844 21883 0.535681 - . ID=CGI_10007567; scaffold42726 TRF Tandem_Repeat 21844 21883 80 + . . scaffold42726 GLEAN mRNA 25659 25693 0.535681 - . ID=CGI_10007567; scaffold42726 TRF Tandem_Repeat 25659 25693 52 + . . scaffold42726 GLEAN mRNA 150377 150548 0.999646 - . ID=CGI_10007570; scaffold42726 TRF Tandem_Repeat 150377 150548 101 + . . scaffold42726 GLEAN mRNA 150413 150643 0.999646 - . ID=CGI_10007570; scaffold42726 TRF Tandem_Repeat 150413 150643 232 + . . scaffold42726 GLEAN mRNA 150396 150689 0.999646 - . ID=CGI_10007570; scaffold42726 TRF Tandem_Repeat 150396 150689 256 + . . scaffold42726 GLEAN mRNA 150429 150687 0.999646 - . ID=CGI_10007570; scaffold42726 TRF Tandem_Repeat 150429 150687 225 + . . scaffold42726 GLEAN mRNA 183529 183778 0.593391 - . ID=CGI_10007572; scaffold42726 TRF Tandem_Repeat 183529 183778 65 + . . scaffold879 GLEAN mRNA 84182 84211 0.946613 - . ID=CGI_10007573; scaffold879 TRF Tandem_Repeat 84182 84211 51 + . . scaffold879 GLEAN mRNA 95470 97410 0.946613 - . ID=CGI_10007573; scaffold879 WUBlastX LINE_RTE-BovB 95470 97410 1677 + . . scaffold879 GLEAN mRNA 101305 101359 0.946613 - . ID=CGI_10007573; scaffold879 TRF Tandem_Repeat 101305 101359 110 + . . scaffold879 GLEAN mRNA 107028 107058 0.946613 - . ID=CGI_10007573; scaffold879 TRF Tandem_Repeat 107028 107058 62 + . . scaffold879 GLEAN mRNA 107917 107974 0.946613 - . ID=CGI_10007573; scaffold879 TRF Tandem_Repeat 107917 107974 64 + . . scaffold879 GLEAN mRNA 107914 107975 0.946613 - . ID=CGI_10007573; scaffold879 TRF Tandem_Repeat 107914 107975 72 + . . scaffold879 GLEAN mRNA 116716 116774 0.946613 - . ID=CGI_10007573; scaffold879 TRF Tandem_Repeat 116716 116774 118 + . . scaffold879 GLEAN mRNA 123108 123161 0.946613 - . ID=CGI_10007573; scaffold879 TRF Tandem_Repeat 123108 123161 99 + . . scaffold879 GLEAN mRNA 124665 124732 0.946613 - . ID=CGI_10007573; scaffold879 TRF Tandem_Repeat 124665 124732 127 + . . scaffold1299 GLEAN mRNA 28550 28593 0.593391 + . ID=CGI_10007576; scaffold1299 TRF Tandem_Repeat 28550 28593 88 + . . scaffold1299 GLEAN mRNA 31538 31639 0.593391 + . ID=CGI_10007576; scaffold1299 TRF Tandem_Repeat 31538 31639 188 + . . scaffold1299 GLEAN mRNA 59675 59779 0.999654 - . ID=CGI_10007577; scaffold1299 TRF Tandem_Repeat 59675 59779 56 + . . scaffold1299 GLEAN mRNA 59701 59765 0.999654 - . ID=CGI_10007577; scaffold1299 TRF Tandem_Repeat 59701 59765 67 + . . scaffold1299 GLEAN mRNA 105662 105707 0.814101 - . ID=CGI_10007582; scaffold1299 TRF Tandem_Repeat 105662 105707 51 + . . scaffold1299 GLEAN mRNA 124854 124928 0.662391 - . ID=CGI_10007583; scaffold1299 TRF Tandem_Repeat 124854 124928 150 + . . scaffold1299 GLEAN mRNA 125332 125391 0.662391 - . ID=CGI_10007583; scaffold1299 TRF Tandem_Repeat 125332 125391 111 + . . scaffold1299 GLEAN mRNA 133678 133713 0.923911 + . ID=CGI_10007586; scaffold1299 TRF Tandem_Repeat 133678 133713 72 + . . scaffold1299 GLEAN mRNA 137018 137091 0.923911 + . ID=CGI_10007586; scaffold1299 TRF Tandem_Repeat 137018 137091 148 + . . scaffold1299 GLEAN mRNA 141262 141357 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 141262 141357 69 - . . scaffold1299 GLEAN mRNA 141478 141612 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 141478 141612 81 - . . scaffold1299 GLEAN mRNA 141478 141657 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 141478 141657 58 - . . scaffold1299 GLEAN mRNA 139911 140441 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 139911 140441 234 - . . scaffold1299 GLEAN mRNA 140527 140601 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 140527 140601 33 - . . scaffold1299 GLEAN mRNA 141360 141473 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 141360 141473 71 - . . scaffold1299 GLEAN mRNA 139259 139771 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 139259 139771 137 - . . scaffold1299 GLEAN mRNA 140606 141202 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 140606 141202 162 - . . scaffold1299 GLEAN mRNA 139995 140450 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 139995 140450 296 - . . scaffold1299 GLEAN mRNA 139253 139909 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_RTE-BovB 139253 139909 42 - . . scaffold1299 GLEAN mRNA 138494 138661 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_L1 138494 138661 60 - . . scaffold1299 GLEAN mRNA 140007 140579 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_L1 140007 140579 95 - . . scaffold1299 GLEAN mRNA 138488 138685 0.923911 + . ID=CGI_10007586; scaffold1299 WUBlastX LINE_L1-Tx1 138488 138685 47 - . . scaffold1299 GLEAN mRNA 156208 156246 0.923911 + . ID=CGI_10007586; scaffold1299 TRF Tandem_Repeat 156208 156246 53 + . . scaffold1299 GLEAN mRNA 164930 164963 0.923911 + . ID=CGI_10007586; scaffold1299 TRF Tandem_Repeat 164930 164963 59 + . . scaffold474 GLEAN mRNA 41849 42388 0.711345 + . ID=CGI_10007591; scaffold474 WUBlastX LTR_Pao 41849 42388 249 - . . scaffold474 GLEAN mRNA 41714 42400 0.711345 + . ID=CGI_10007591; scaffold474 WUBlastX LTR_Pao 41714 42400 237 - . . scaffold474 GLEAN mRNA 111648 111840 0.993584 + . ID=CGI_10007593; scaffold474 TRF Tandem_Repeat 111648 111840 167 + . . scaffold474 GLEAN mRNA 111987 112261 0.993584 + . ID=CGI_10007593; scaffold474 TRF Tandem_Repeat 111987 112261 185 + . . scaffold474 GLEAN mRNA 111956 112290 0.993584 + . ID=CGI_10007593; scaffold474 TRF Tandem_Repeat 111956 112290 235 + . . scaffold474 GLEAN mRNA 119373 120131 0.993584 + . ID=CGI_10007593; scaffold474 TRF Tandem_Repeat 119373 120131 1222 + . . scaffold474 GLEAN mRNA 177252 177930 0.256829 - . ID=CGI_10007598; scaffold474 TRF Tandem_Repeat 177252 177930 729 + . . scaffold474 GLEAN mRNA 175833 176375 0.256829 - . ID=CGI_10007598; scaffold474 WUBlastX LINE_RTE-BovB 175833 176375 81 + . . scaffold474 GLEAN mRNA 176800 176931 0.256829 - . ID=CGI_10007598; scaffold474 WUBlastX LINE_RTE-BovB 176800 176931 56 + . . scaffold474 GLEAN mRNA 176392 176556 0.256829 - . ID=CGI_10007598; scaffold474 WUBlastX LINE_RTE-BovB 176392 176556 95 + . . scaffold474 GLEAN mRNA 176621 176896 0.256829 - . ID=CGI_10007598; scaffold474 WUBlastX LINE_RTE-BovB 176621 176896 20 + . . scaffold474 GLEAN mRNA 184675 184746 0.59015 - . ID=CGI_10007599; scaffold474 WUBlastX LTR_Copia 184675 184746 24 - . . scaffold42740 GLEAN mRNA 37196 37238 0.522616 + . ID=CGI_10007607; scaffold42740 TRF Tandem_Repeat 37196 37238 68 + . . scaffold42740 GLEAN mRNA 41845 41904 0.522616 + . ID=CGI_10007607; scaffold42740 TRF Tandem_Repeat 41845 41904 70 + . . scaffold42740 GLEAN mRNA 48759 48794 0.522616 + . ID=CGI_10007607; scaffold42740 TRF Tandem_Repeat 48759 48794 72 + . . scaffold42740 GLEAN mRNA 65875 65943 0.999494 + . ID=CGI_10007608; scaffold42740 TRF Tandem_Repeat 65875 65943 138 + . . scaffold42740 GLEAN mRNA 67093 67119 0.999494 + . ID=CGI_10007608; scaffold42740 TRF Tandem_Repeat 67093 67119 54 + . . scaffold42740 GLEAN mRNA 76946 76992 0.999494 + . ID=CGI_10007608; scaffold42740 TRF Tandem_Repeat 76946 76992 94 + . . scaffold42740 GLEAN mRNA 77231 77321 0.999494 + . ID=CGI_10007608; scaffold42740 TRF Tandem_Repeat 77231 77321 146 + . . scaffold42740 GLEAN mRNA 77287 77377 0.999494 + . ID=CGI_10007608; scaffold42740 TRF Tandem_Repeat 77287 77377 98 + . . scaffold42740 GLEAN mRNA 78865 78973 0.999494 + . ID=CGI_10007608; scaffold42740 TRF Tandem_Repeat 78865 78973 146 + . . scaffold42740 GLEAN mRNA 76121 76294 0.999494 + . ID=CGI_10007608; scaffold42740 WUBlastX DNA_Harbinger 76121 76294 22 - . . scaffold42740 GLEAN mRNA 77045 77107 0.999494 + . ID=CGI_10007608; scaffold42740 WUBlastX DNA_Harbinger 77045 77107 24 - . . scaffold42740 GLEAN mRNA 75309 76163 0.999494 + . ID=CGI_10007608; scaffold42740 WUBlastX DNA_Harbinger 75309 76163 323 - . . scaffold42740 GLEAN mRNA 81923 81961 0.999494 + . ID=CGI_10007608; scaffold42740 TRF Tandem_Repeat 81923 81961 78 + . . scaffold42740 GLEAN mRNA 76946 76992 0.249736 - . ID=CGI_10007609; scaffold42740 TRF Tandem_Repeat 76946 76992 94 + . . scaffold42740 GLEAN mRNA 77231 77321 0.249736 - . ID=CGI_10007609; scaffold42740 TRF Tandem_Repeat 77231 77321 146 + . . scaffold42740 GLEAN mRNA 77287 77377 0.249736 - . ID=CGI_10007609; scaffold42740 TRF Tandem_Repeat 77287 77377 98 + . . scaffold42740 GLEAN mRNA 78865 78973 0.249736 - . ID=CGI_10007609; scaffold42740 TRF Tandem_Repeat 78865 78973 146 + . . scaffold42740 GLEAN mRNA 76121 76294 0.249736 - . ID=CGI_10007609; scaffold42740 WUBlastX DNA_Harbinger 76121 76294 22 - . . scaffold42740 GLEAN mRNA 77045 77107 0.249736 - . ID=CGI_10007609; scaffold42740 WUBlastX DNA_Harbinger 77045 77107 24 - . . scaffold42740 GLEAN mRNA 75816 76163 0.249736 - . ID=CGI_10007609; scaffold42740 WUBlastX DNA_Harbinger 75309 76163 323 - . . scaffold42740 GLEAN mRNA 81923 81961 0.249736 - . ID=CGI_10007609; scaffold42740 TRF Tandem_Repeat 81923 81961 78 + . . scaffold1200 GLEAN mRNA 3503 3659 0.646718 - . ID=CGI_10007614; scaffold1200 TRF Tandem_Repeat 3503 3659 143 + . . scaffold1200 GLEAN mRNA 6758 6786 0.646718 - . ID=CGI_10007614; scaffold1200 TRF Tandem_Repeat 6758 6786 51 + . . scaffold1200 GLEAN mRNA 102057 102242 0.618241 + . ID=CGI_10007618; scaffold1200 WUBlastX LINE_CR1-L2 102057 102242 116 + . . scaffold1200 GLEAN mRNA 114700 115593 1 + . ID=CGI_10007620; scaffold1200 TRF Tandem_Repeat 114700 115593 1068 + . . scaffold1200 GLEAN mRNA 151663 151689 0.941626 + . ID=CGI_10007621; scaffold1200 TRF Tandem_Repeat 151663 151689 54 + . . scaffold1200 GLEAN mRNA 155672 155730 0.941626 + . ID=CGI_10007621; scaffold1200 TRF Tandem_Repeat 155672 155730 118 + . . scaffold1200 GLEAN mRNA 156223 156259 0.941626 + . ID=CGI_10007621; scaffold1200 TRF Tandem_Repeat 156223 156259 74 + . . scaffold1200 GLEAN mRNA 164405 164557 0.983119 - . ID=CGI_10007622; scaffold1200 WUBlastX DNA_IS4EU 164405 164557 52 - . . scaffold42760 GLEAN mRNA 7169 7231 1 + . ID=CGI_10007625; scaffold42760 TRF Tandem_Repeat 7169 7231 119 + . . scaffold42760 GLEAN mRNA 59167 59224 0.975137 - . ID=CGI_10007628; scaffold42760 TRF Tandem_Repeat 59167 59224 73 + . . scaffold42760 GLEAN mRNA 59167 59224 0.975137 - . ID=CGI_10007628; scaffold42760 TRF Tandem_Repeat 59167 59224 73 + . . scaffold42760 GLEAN mRNA 59170 59223 0.975137 - . ID=CGI_10007628; scaffold42760 TRF Tandem_Repeat 59170 59223 56 + . . scaffold42760 GLEAN mRNA 88228 88256 0.574357 - . ID=CGI_10007629; scaffold42760 TRF Tandem_Repeat 88228 88256 58 + . . scaffold42760 GLEAN mRNA 107995 108042 1 - . ID=CGI_10007631; scaffold42760 TRF Tandem_Repeat 107995 108042 96 + . . scaffold42760 GLEAN mRNA 126423 126453 0.999575 + . ID=CGI_10007632; scaffold42760 TRF Tandem_Repeat 126423 126453 62 + . . scaffold640 GLEAN mRNA 15227 15288 0.673322 - . ID=CGI_10007636; scaffold640 TRF Tandem_Repeat 15227 15288 115 + . . scaffold640 GLEAN mRNA 15286 15315 0.673322 - . ID=CGI_10007636; scaffold640 TRF Tandem_Repeat 15286 15315 60 + . . scaffold640 GLEAN mRNA 28391 28433 0.673322 - . ID=CGI_10007636; scaffold640 TRF Tandem_Repeat 28391 28433 86 + . . scaffold640 GLEAN mRNA 31192 31232 0.673322 - . ID=CGI_10007636; scaffold640 TRF Tandem_Repeat 31192 31232 82 + . . scaffold452 GLEAN mRNA 66051 66347 0.999624 + . ID=CGI_10007651; scaffold452 TRF Tandem_Repeat 66051 66347 475 + . . scaffold452 GLEAN mRNA 79855 80103 0.973843 + . ID=CGI_10007652; scaffold452 TRF Tandem_Repeat 79855 80103 169 + . . scaffold452 GLEAN mRNA 79881 80103 0.973843 + . ID=CGI_10007652; scaffold452 TRF Tandem_Repeat 79881 80103 200 + . . scaffold452 GLEAN mRNA 80438 80967 0.973843 + . ID=CGI_10007652; scaffold452 TRF Tandem_Repeat 80438 80967 410 + . . scaffold452 GLEAN mRNA 80442 80967 0.973843 + . ID=CGI_10007652; scaffold452 TRF Tandem_Repeat 80442 80967 384 + . . scaffold452 GLEAN mRNA 80407 80967 0.973843 + . ID=CGI_10007652; scaffold452 TRF Tandem_Repeat 80407 80967 529 + . . scaffold452 GLEAN mRNA 92519 93992 0.999993 - . ID=CGI_10007654; scaffold452 TRF Tandem_Repeat 92519 93992 2462 + . . scaffold452 GLEAN mRNA 95661 95854 0.992435 - . ID=CGI_10007655; scaffold452 TRF Tandem_Repeat 95661 95854 324 + . . scaffold452 GLEAN mRNA 96106 96365 0.992435 - . ID=CGI_10007655; scaffold452 TRF Tandem_Repeat 96106 96365 475 + . . scaffold452 GLEAN mRNA 97109 98231 0.992435 - . ID=CGI_10007655; scaffold452 TRF Tandem_Repeat 97109 98231 2039 + . . scaffold452 GLEAN mRNA 102854 102886 0.992435 - . ID=CGI_10007655; scaffold452 TRF Tandem_Repeat 102854 102886 57 + . . scaffold452 GLEAN mRNA 125807 125808 1 - . ID=CGI_10007657; scaffold452 TRF Tandem_Repeat 125750 125808 118 + . . scaffold452 GLEAN mRNA 130313 130352 1 - . ID=CGI_10007657; scaffold452 TRF Tandem_Repeat 130313 130352 71 + . . scaffold452 GLEAN mRNA 130420 130964 1 - . ID=CGI_10007657; scaffold452 TRF Tandem_Repeat 130420 130964 614 + . . scaffold452 GLEAN mRNA 131051 131153 1 - . ID=CGI_10007657; scaffold452 TRF Tandem_Repeat 131051 131153 206 + . . scaffold452 GLEAN mRNA 171150 171247 0.717692 - . ID=CGI_10007659; scaffold452 TRF Tandem_Repeat 171150 171247 54 + . . scaffold452 GLEAN mRNA 172787 172844 0.717692 - . ID=CGI_10007659; scaffold452 TRF Tandem_Repeat 172787 172844 72 + . . scaffold452 GLEAN mRNA 172788 172844 0.717692 - . ID=CGI_10007659; scaffold452 TRF Tandem_Repeat 172788 172844 82 + . . scaffold42766 GLEAN mRNA 601 645 0.982593 - . ID=CGI_10007660; scaffold42766 TRF Tandem_Repeat 601 645 81 + . . scaffold42766 GLEAN mRNA 887 1034 0.982593 - . ID=CGI_10007660; scaffold42766 TRF Tandem_Repeat 887 1034 87 + . . scaffold42766 GLEAN mRNA 2226 2934 0.982593 - . ID=CGI_10007660; scaffold42766 TRF Tandem_Repeat 2226 2934 971 + . . scaffold42766 GLEAN mRNA 2945 2995 0.982593 - . ID=CGI_10007660; scaffold42766 TRF Tandem_Repeat 2945 2995 75 + . . scaffold42766 GLEAN mRNA 2938 2987 0.982593 - . ID=CGI_10007660; scaffold42766 TRF Tandem_Repeat 2938 2987 55 + . . scaffold42766 GLEAN mRNA 3287 3574 0.982593 - . ID=CGI_10007660; scaffold42766 WUBlastX DNA_hAT-Tip100 3287 3574 97 - . . scaffold42766 GLEAN mRNA 3338 4870 0.982593 - . ID=CGI_10007660; scaffold42766 WUBlastX DNA_hAT-Tip100 3338 4870 337 - . . scaffold42766 GLEAN mRNA 4016 5185 0.982593 - . ID=CGI_10007660; scaffold42766 WUBlastX DNA_hAT-Charlie 4016 5185 33 - . . scaffold42766 GLEAN mRNA 5309 5530 0.982593 - . ID=CGI_10007660; scaffold42766 WUBlastX DNA_hAT-Tip100 5309 5530 34 - . . scaffold42766 GLEAN mRNA 140448 140491 0.999999 + . ID=CGI_10007664; scaffold42766 TRF Tandem_Repeat 140448 140491 79 + . . scaffold42766 GLEAN mRNA 140815 140857 0.999999 + . ID=CGI_10007664; scaffold42766 TRF Tandem_Repeat 140815 140857 86 + . . scaffold42766 GLEAN mRNA 176891 176932 0.725198 + . ID=CGI_10007667; scaffold42766 TRF Tandem_Repeat 176891 176932 52 + . . scaffold42754 GLEAN mRNA 2070 2105 0.999249 + . ID=CGI_10007669; scaffold42754 TRF Tandem_Repeat 2070 2105 54 + . . scaffold42754 GLEAN mRNA 25847 26064 0.899307 - . ID=CGI_10007671; scaffold42754 TRF Tandem_Repeat 25847 26064 391 + . . scaffold42754 GLEAN mRNA 38223 38363 0.999991 - . ID=CGI_10007672; scaffold42754 TRF Tandem_Repeat 38223 38363 255 + . . scaffold42754 GLEAN mRNA 41000 41051 0.999991 - . ID=CGI_10007672; scaffold42754 TRF Tandem_Repeat 41000 41051 104 + . . scaffold42754 GLEAN mRNA 43840 44140 0.999988 - . ID=CGI_10007673; scaffold42754 TRF Tandem_Repeat 43840 44140 541 + . . scaffold42754 GLEAN mRNA 45962 46087 0.999988 - . ID=CGI_10007673; scaffold42754 TRF Tandem_Repeat 45962 46087 80 + . . scaffold42754 GLEAN mRNA 46314 46368 0.999988 - . ID=CGI_10007673; scaffold42754 TRF Tandem_Repeat 46314 46368 110 + . . scaffold42754 GLEAN mRNA 46768 46849 0.999988 - . ID=CGI_10007673; scaffold42754 TRF Tandem_Repeat 46768 46849 92 + . . scaffold42754 GLEAN mRNA 47007 47123 0.999988 - . ID=CGI_10007673; scaffold42754 TRF Tandem_Repeat 47007 47123 112 + . . scaffold42754 GLEAN mRNA 47029 47123 0.999988 - . ID=CGI_10007673; scaffold42754 TRF Tandem_Repeat 47029 47123 127 + . . scaffold42754 GLEAN mRNA 48699 49077 0.999988 - . ID=CGI_10007673; scaffold42754 TRF Tandem_Repeat 48699 49077 435 + . . scaffold42754 GLEAN mRNA 48699 49077 0.999988 - . ID=CGI_10007673; scaffold42754 TRF Tandem_Repeat 48699 49077 468 + . . scaffold42754 GLEAN mRNA 52413 52466 0.999988 - . ID=CGI_10007673; scaffold42754 TRF Tandem_Repeat 52413 52466 73 + . . scaffold42754 GLEAN mRNA 52406 52460 0.999988 - . ID=CGI_10007673; scaffold42754 TRF Tandem_Repeat 52406 52460 65 + . . scaffold42754 GLEAN mRNA 73523 73907 0.999997 - . ID=CGI_10007674; scaffold42754 TRF Tandem_Repeat 73523 73907 598 + . . scaffold42754 GLEAN mRNA 135198 135382 0.656628 - . ID=CGI_10007679; scaffold42754 TRF Tandem_Repeat 135198 135382 155 + . . scaffold42754 GLEAN mRNA 135166 135380 0.656628 - . ID=CGI_10007679; scaffold42754 TRF Tandem_Repeat 135166 135380 141 + . . scaffold42754 GLEAN mRNA 137328 137891 0.656628 - . ID=CGI_10007679; scaffold42754 TRF Tandem_Repeat 137328 137891 536 + . . scaffold42754 GLEAN mRNA 137329 137891 0.656628 - . ID=CGI_10007679; scaffold42754 TRF Tandem_Repeat 137329 137891 748 + . . scaffold42754 GLEAN mRNA 144880 144997 0.656628 - . ID=CGI_10007679; scaffold42754 TRF Tandem_Repeat 144880 144997 218 + . . scaffold42754 GLEAN mRNA 148693 148744 0.656628 - . ID=CGI_10007679; scaffold42754 TRF Tandem_Repeat 148693 148744 104 + . . scaffold42754 GLEAN mRNA 152143 152193 0.656628 - . ID=CGI_10007679; scaffold42754 TRF Tandem_Repeat 152143 152193 75 + . . scaffold42754 GLEAN mRNA 154149 154770 0.656628 - . ID=CGI_10007679; scaffold42754 TRF Tandem_Repeat 154149 154770 617 + . . scaffold42754 GLEAN mRNA 160143 160421 0.656628 - . ID=CGI_10007679; scaffold42754 TRF Tandem_Repeat 160143 160421 513 + . . scaffold42754 GLEAN mRNA 160478 160665 0.656628 - . ID=CGI_10007679; scaffold42754 TRF Tandem_Repeat 160478 160665 286 + . . scaffold42754 GLEAN mRNA 161869 161894 0.998261 + . ID=CGI_10007680; scaffold42754 TRF Tandem_Repeat 161869 161894 52 + . . scaffold1081 GLEAN mRNA 90962 91000 0.999493 + . ID=CGI_10007683; scaffold1081 TRF Tandem_Repeat 90962 91000 51 + . . scaffold1081 GLEAN mRNA 90966 91016 0.999493 + . ID=CGI_10007683; scaffold1081 TRF Tandem_Repeat 90966 91016 50 + . . scaffold1081 GLEAN mRNA 105110 105166 0.989219 + . ID=CGI_10007684; scaffold1081 TRF Tandem_Repeat 105110 105166 80 + . . scaffold1081 GLEAN mRNA 164298 164504 0.603491 + . ID=CGI_10007686; scaffold1081 WUBlastX LTR_Gypsy 164298 164504 44 + . . scaffold1081 GLEAN mRNA 164358 164564 0.603491 + . ID=CGI_10007686; scaffold1081 WUBlastX LTR_Gypsy 164358 164564 50 + . . scaffold1081 GLEAN mRNA 164346 164606 0.603491 + . ID=CGI_10007686; scaffold1081 WUBlastX LTR_Gypsy 164346 164606 33 + . . scaffold1081 GLEAN mRNA 165703 166212 0.603491 + . ID=CGI_10007686; scaffold1081 WUBlastX LINE_Penelope 165703 166212 44 + . . scaffold42770 GLEAN mRNA 27848 28860 0.562742 - . ID=CGI_10007687; scaffold42770 TRF Tandem_Repeat 27848 28860 991 + . . scaffold42770 GLEAN mRNA 30240 30294 0.562742 - . ID=CGI_10007687; scaffold42770 TRF Tandem_Repeat 30240 30294 83 + . . scaffold42770 GLEAN mRNA 31890 31921 0.562742 - . ID=CGI_10007687; scaffold42770 TRF Tandem_Repeat 31890 31921 50 + . . scaffold42770 GLEAN mRNA 26034 26216 0.562742 - . ID=CGI_10007687; scaffold42770 WUBlastX LINE_L1-Tx1 26034 26216 55 - . . scaffold42770 GLEAN mRNA 25983 26174 0.562742 - . ID=CGI_10007687; scaffold42770 WUBlastX LINE_L1-Tx1 25983 26174 92 - . . scaffold42770 GLEAN mRNA 16701 16877 0.562742 - . ID=CGI_10007687; scaffold42770 WUBlastX LINE_L1 16701 16877 68 - . . scaffold42770 GLEAN mRNA 16943 17152 0.562742 - . ID=CGI_10007687; scaffold42770 WUBlastX LINE_L1 16943 17152 35 - . . scaffold42770 GLEAN mRNA 16555 16707 0.562742 - . ID=CGI_10007687; scaffold42770 WUBlastX LINE_L1 16555 16707 35 - . . scaffold42770 GLEAN mRNA 16692 16916 0.562742 - . ID=CGI_10007687; scaffold42770 WUBlastX LINE_L1-Tx1 16692 16916 43 - . . scaffold42770 GLEAN mRNA 16979 17152 0.562742 - . ID=CGI_10007687; scaffold42770 WUBlastX LINE_L1-Tx1 16979 17152 40 - . . scaffold42770 GLEAN mRNA 25923 26180 0.562742 - . ID=CGI_10007687; scaffold42770 WUBlastX LINE_L1-Tx1 25923 26180 74 - . . scaffold42770 GLEAN mRNA 16273 16968 0.562742 - . ID=CGI_10007687; scaffold42770 WUBlastX LINE_L1-Tx1 16273 16968 29 - . . scaffold42770 GLEAN mRNA 53330 53608 0.618185 + . ID=CGI_10007689; scaffold42770 WUBlastX DNA_Harbinger 53330 53608 88 + . . scaffold42770 GLEAN mRNA 53297 53331 0.618185 + . ID=CGI_10007689; scaffold42770 WUBlastX DNA_Harbinger 53254 53331 22 + . . scaffold42770 GLEAN mRNA 53297 53668 0.618185 + . ID=CGI_10007689; scaffold42770 WUBlastX DNA_Harbinger 53294 53908 24 + . . scaffold42770 GLEAN mRNA 186726 186880 1 - . ID=CGI_10007692; scaffold42770 TRF Tandem_Repeat 186726 186880 143 + . . scaffold42794 GLEAN mRNA 55986 56860 0.504718 + . ID=CGI_10007695; scaffold42794 TRF Tandem_Repeat 55986 56860 1174 + . . scaffold42794 GLEAN mRNA 58436 60859 0.504718 + . ID=CGI_10007695; scaffold42794 TRF Tandem_Repeat 58436 60859 3508 + . . scaffold42794 GLEAN mRNA 58436 60859 0.504718 + . ID=CGI_10007695; scaffold42794 TRF Tandem_Repeat 58436 60859 3585 + . . scaffold42794 GLEAN mRNA 68457 68533 0.999569 + . ID=CGI_10007697; scaffold42794 TRF Tandem_Repeat 68457 68533 131 + . . scaffold42794 GLEAN mRNA 70312 70365 0.999569 + . ID=CGI_10007697; scaffold42794 TRF Tandem_Repeat 70312 70365 108 + . . scaffold42794 GLEAN mRNA 74686 74727 0.999569 + . ID=CGI_10007697; scaffold42794 TRF Tandem_Repeat 74686 74727 84 + . . scaffold42794 GLEAN mRNA 83511 83562 0.999569 + . ID=CGI_10007697; scaffold42794 TRF Tandem_Repeat 83511 83562 104 + . . scaffold42794 GLEAN mRNA 119192 119232 0.999999 + . ID=CGI_10007698; scaffold42794 TRF Tandem_Repeat 119192 119232 82 + . . scaffold42794 GLEAN mRNA 139529 139837 1 + . ID=CGI_10007699; scaffold42794 TRF Tandem_Repeat 139529 139837 514 + . . scaffold42794 GLEAN mRNA 175104 175153 1 - . ID=CGI_10007702; scaffold42794 TRF Tandem_Repeat 175104 175153 100 + . . scaffold42794 GLEAN mRNA 178130 178181 1 - . ID=CGI_10007702; scaffold42794 TRF Tandem_Repeat 178130 178181 104 + . . scaffold42794 GLEAN mRNA 179468 179517 1 - . ID=CGI_10007702; scaffold42794 TRF Tandem_Repeat 179468 179517 100 + . . scaffold42776 GLEAN mRNA 25373 25429 0.727377 + . ID=CGI_10007705; scaffold42776 TRF Tandem_Repeat 25373 25429 114 + . . scaffold42776 GLEAN mRNA 49354 50060 0.937542 - . ID=CGI_10007707; scaffold42776 TRF Tandem_Repeat 49354 50060 849 + . . scaffold42776 GLEAN mRNA 52027 52091 0.937542 - . ID=CGI_10007707; scaffold42776 TRF Tandem_Repeat 52027 52091 66 + . . scaffold42776 GLEAN mRNA 123966 124017 0.999676 + . ID=CGI_10007712; scaffold42776 TRF Tandem_Repeat 123966 124017 104 + . . scaffold42776 GLEAN mRNA 136251 136294 0.990126 + . ID=CGI_10007713; scaffold42776 TRF Tandem_Repeat 136251 136294 88 + . . scaffold42776 GLEAN mRNA 156682 156727 0.990126 + . ID=CGI_10007713; scaffold42776 TRF Tandem_Repeat 156682 156727 92 + . . scaffold42776 GLEAN mRNA 159491 159553 0.990126 + . ID=CGI_10007713; scaffold42776 TRF Tandem_Repeat 159491 159553 126 + . . scaffold42790 GLEAN mRNA 23443 23502 0.999944 - . ID=CGI_10007716; scaffold42790 TRF Tandem_Repeat 23443 23502 120 + . . scaffold42790 GLEAN mRNA 30015 30455 0.764018 - . ID=CGI_10007717; scaffold42790 TRF Tandem_Repeat 30015 30455 571 + . . scaffold42790 GLEAN mRNA 31363 31619 0.764018 - . ID=CGI_10007717; scaffold42790 TRF Tandem_Repeat 31363 31619 273 + . . scaffold42790 GLEAN mRNA 51085 51128 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 51085 51128 88 + . . scaffold42790 GLEAN mRNA 51647 51907 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 51647 51907 267 + . . scaffold42790 GLEAN mRNA 52515 52894 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 52515 52894 584 + . . scaffold42790 GLEAN mRNA 52810 53143 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 52810 53143 252 + . . scaffold42790 GLEAN mRNA 54668 54978 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 54668 54978 333 + . . scaffold42790 GLEAN mRNA 54655 54939 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 54655 54939 448 + . . scaffold42790 GLEAN mRNA 54810 54978 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 54810 54978 278 + . . scaffold42790 GLEAN mRNA 55532 55959 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 55532 55959 667 + . . scaffold42790 GLEAN mRNA 56412 56450 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 56412 56450 78 + . . scaffold42790 GLEAN mRNA 56809 56886 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 56809 56886 120 + . . scaffold42790 GLEAN mRNA 56792 56881 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 56792 56881 98 + . . scaffold42790 GLEAN mRNA 60146 60197 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 60146 60197 68 + . . scaffold42790 GLEAN mRNA 60298 60325 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 60298 60325 56 + . . scaffold42790 GLEAN mRNA 62832 62873 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 62832 62873 84 + . . scaffold42790 GLEAN mRNA 67777 67821 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 67777 67821 90 + . . scaffold42790 GLEAN mRNA 69759 70339 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 69759 70339 689 + . . scaffold42790 GLEAN mRNA 69760 70339 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 69760 70339 688 + . . scaffold42790 GLEAN mRNA 71641 71799 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 71641 71799 126 + . . scaffold42790 GLEAN mRNA 72771 72904 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 72771 72904 250 + . . scaffold42790 GLEAN mRNA 78256 78354 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 78256 78354 180 + . . scaffold42790 GLEAN mRNA 79229 79561 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 79229 79561 477 + . . scaffold42790 GLEAN mRNA 79229 79561 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 79229 79561 463 + . . scaffold42790 GLEAN mRNA 79229 79502 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 79229 79502 431 + . . scaffold42790 GLEAN mRNA 84725 84772 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 84725 84772 96 + . . scaffold42790 GLEAN mRNA 87622 87736 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 87622 87736 63 + . . scaffold42790 GLEAN mRNA 93232 93549 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 93232 93549 618 + . . scaffold42790 GLEAN mRNA 94316 94457 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 94316 94457 152 + . . scaffold42790 GLEAN mRNA 94914 95169 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 94914 95169 431 + . . scaffold42790 GLEAN mRNA 183727 183973 0.999947 - . ID=CGI_10007719; scaffold42790 TRF Tandem_Repeat 183727 183973 381 + . . scaffold42790 GLEAN mRNA 186125 186961 0.999947 - . ID=CGI_10007719; scaffold42790 WUBlastX LINE_Penelope 186125 186961 191 - . . scaffold42790 GLEAN mRNA 186970 187524 0.999947 - . ID=CGI_10007719; scaffold42790 WUBlastX LINE_Penelope 186970 187524 312 - . . scaffold42790 GLEAN mRNA 184363 184527 0.999947 - . ID=CGI_10007719; scaffold42790 WUBlastX DNA_Harbinger 184363 184527 58 - . . scaffold42790 GLEAN mRNA 186985 187620 0.999947 - . ID=CGI_10007719; scaffold42790 WUBlastX LINE_Penelope 186985 187620 100 - . . scaffold42790 GLEAN mRNA 186985 187767 0.999947 - . ID=CGI_10007719; scaffold42790 WUBlastX LINE_Penelope 186985 187767 81 - . . scaffold707 GLEAN mRNA 48251 48412 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Harbinger 48251 48412 40 - . . scaffold707 GLEAN mRNA 40871 41041 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX LTR_Gypsy 40871 41041 125 - . . scaffold707 GLEAN mRNA 43628 43801 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Harbinger 43628 43801 52 + . . scaffold707 GLEAN mRNA 47451 47711 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Harbinger 47451 47711 102 - . . scaffold707 GLEAN mRNA 48493 48606 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Harbinger 48493 48606 110 - . . scaffold707 GLEAN mRNA 48490 48645 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Harbinger 48490 48645 72 - . . scaffold707 GLEAN mRNA 37243 37593 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Sola 37243 37593 90 + . . scaffold707 GLEAN mRNA 37267 37560 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Sola 37267 37560 96 + . . scaffold707 GLEAN mRNA 48230 48385 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Harbinger 48230 48385 79 - . . scaffold707 GLEAN mRNA 40844 41017 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX LTR_Gypsy 40844 41017 109 - . . scaffold707 GLEAN mRNA 47981 48094 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Harbinger 47981 48094 61 - . . scaffold707 GLEAN mRNA 49201 49659 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Harbinger 49201 49659 107 - . . scaffold707 GLEAN mRNA 49261 49629 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Harbinger 49261 49629 157 - . . scaffold707 GLEAN mRNA 113150 113716 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 113150 113716 526 + . . scaffold707 GLEAN mRNA 113150 113716 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 113150 113716 634 + . . scaffold707 GLEAN mRNA 118435 118472 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 118435 118472 76 + . . scaffold707 GLEAN mRNA 118588 118630 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 118588 118630 59 + . . scaffold707 GLEAN mRNA 127244 127765 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 127244 127765 614 + . . scaffold707 GLEAN mRNA 129094 129166 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 129094 129166 146 + . . scaffold707 GLEAN mRNA 129211 129254 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 129211 129254 88 + . . scaffold707 GLEAN mRNA 129958 130693 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 129958 130693 836 + . . scaffold707 GLEAN mRNA 129956 130836 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 129956 130836 1045 + . . scaffold707 GLEAN mRNA 129956 130859 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 129956 130859 1227 + . . scaffold707 GLEAN mRNA 130696 130836 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 130696 130836 210 + . . scaffold707 GLEAN mRNA 129958 130836 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 129958 130836 1023 + . . scaffold707 GLEAN mRNA 130696 130859 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 130696 130859 202 + . . scaffold707 GLEAN mRNA 130899 131006 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 130899 131006 116 + . . scaffold707 GLEAN mRNA 132795 132897 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 132795 132897 50 + . . scaffold707 GLEAN mRNA 132795 132897 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 132795 132897 98 + . . scaffold707 GLEAN mRNA 133833 133892 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 133833 133892 120 + . . scaffold707 GLEAN mRNA 148030 148068 0.998094 + . ID=CGI_10007725; scaffold707 TRF Tandem_Repeat 148030 148068 69 + . . scaffold707 GLEAN mRNA 148260 148394 0.998094 + . ID=CGI_10007725; scaffold707 WUBlastX LTR_Gypsy 148260 148394 39 + . . scaffold707 GLEAN mRNA 162232 162452 0.99219 - . ID=CGI_10007726; scaffold707 TRF Tandem_Repeat 162232 162452 200 + . . scaffold707 GLEAN mRNA 170586 170868 0.99219 - . ID=CGI_10007726; scaffold707 TRF Tandem_Repeat 170586 170868 381 + . . scaffold707 GLEAN mRNA 170586 170866 0.99219 - . ID=CGI_10007726; scaffold707 TRF Tandem_Repeat 170586 170866 433 + . . scaffold707 GLEAN mRNA 171243 171284 0.99219 - . ID=CGI_10007726; scaffold707 TRF Tandem_Repeat 171243 171284 66 + . . scaffold42784 GLEAN mRNA 59740 59788 0.526003 + . ID=CGI_10007732; scaffold42784 TRF Tandem_Repeat 59740 59788 89 + . . scaffold42784 GLEAN mRNA 59788 59820 0.526003 + . ID=CGI_10007732; scaffold42784 TRF Tandem_Repeat 59788 59820 66 + . . scaffold42784 GLEAN mRNA 59850 59880 0.526003 + . ID=CGI_10007732; scaffold42784 TRF Tandem_Repeat 59850 59880 62 + . . scaffold42784 GLEAN mRNA 54848 55336 0.526003 + . ID=CGI_10007732; scaffold42784 WUBlastX DNA_hAT-hATw 54848 55336 47 - . . scaffold42784 GLEAN mRNA 70501 70592 0.999998 + . ID=CGI_10007733; scaffold42784 TRF Tandem_Repeat 70501 70592 175 + . . scaffold42784 GLEAN mRNA 73714 73789 0.999998 + . ID=CGI_10007733; scaffold42784 TRF Tandem_Repeat 73714 73789 107 + . . scaffold42784 GLEAN mRNA 73715 73789 0.999998 + . ID=CGI_10007733; scaffold42784 TRF Tandem_Repeat 73715 73789 123 + . . scaffold42784 GLEAN mRNA 80185 80458 1 - . ID=CGI_10007734; scaffold42784 TRF Tandem_Repeat 80185 80458 347 + . . scaffold42784 GLEAN mRNA 120613 120683 0.999675 + . ID=CGI_10007739; scaffold42784 TRF Tandem_Repeat 120613 120683 142 + . . scaffold42784 GLEAN mRNA 125679 125752 0.999675 + . ID=CGI_10007739; scaffold42784 TRF Tandem_Repeat 125679 125752 148 + . . scaffold42784 GLEAN mRNA 128599 129077 0.999675 + . ID=CGI_10007739; scaffold42784 TRF Tandem_Repeat 128599 129077 527 + . . scaffold42784 GLEAN mRNA 140944 141002 1 - . ID=CGI_10007740; scaffold42784 TRF Tandem_Repeat 140944 141002 118 + . . scaffold42784 GLEAN mRNA 141282 141331 1 - . ID=CGI_10007740; scaffold42784 TRF Tandem_Repeat 141282 141331 91 + . . scaffold42784 GLEAN mRNA 157282 157314 0.999027 - . ID=CGI_10007742; scaffold42784 TRF Tandem_Repeat 157282 157314 66 + . . scaffold42784 GLEAN mRNA 158127 158194 0.999027 - . ID=CGI_10007742; scaffold42784 TRF Tandem_Repeat 158127 158194 136 + . . scaffold42784 GLEAN mRNA 175669 176255 0.462643 + . ID=CGI_10007744; scaffold42784 TRF Tandem_Repeat 175669 176255 586 + . . scaffold42784 GLEAN mRNA 175669 176255 0.462643 + . ID=CGI_10007744; scaffold42784 TRF Tandem_Repeat 175669 176255 739 + . . scaffold42784 GLEAN mRNA 175669 176255 0.462643 + . ID=CGI_10007744; scaffold42784 TRF Tandem_Repeat 175669 176255 739 + . . scaffold42784 GLEAN mRNA 183272 183296 0.462643 + . ID=CGI_10007744; scaffold42784 TRF Tandem_Repeat 183272 183296 50 + . . scaffold42784 GLEAN mRNA 188091 188151 0.462643 + . ID=CGI_10007744; scaffold42784 TRF Tandem_Repeat 188091 188151 122 + . . scaffold483 GLEAN mRNA 10790 11158 0.823526 + . ID=CGI_10007746; scaffold483 WUBlastX DNA_Harbinger 10790 11158 128 - . . scaffold483 GLEAN mRNA 73997 74033 1 + . ID=CGI_10007747; scaffold483 TRF Tandem_Repeat 73997 74033 74 + . . scaffold483 GLEAN mRNA 87212 87270 0.378101 - . ID=CGI_10007748; scaffold483 TRF Tandem_Repeat 87212 87270 54 + . . scaffold483 GLEAN mRNA 88764 88912 0.378101 - . ID=CGI_10007748; scaffold483 TRF Tandem_Repeat 88764 88912 138 + . . scaffold483 GLEAN mRNA 81866 82110 0.378101 - . ID=CGI_10007748; scaffold483 TRF Tandem_Repeat 81866 82110 355 + . . scaffold483 GLEAN mRNA 143037 143070 0.998273 + . ID=CGI_10007751; scaffold483 TRF Tandem_Repeat 143037 143070 68 + . . scaffold483 GLEAN mRNA 160705 160911 0.98402 - . ID=CGI_10007752; scaffold483 WUBlastX LINE_RTE-X 160705 160911 24 - . . scaffold483 GLEAN mRNA 160777 160947 0.98402 - . ID=CGI_10007752; scaffold483 WUBlastX LINE_RTE-X 160777 160947 41 - . . scaffold42788 GLEAN mRNA 26088 26396 0.998319 - . ID=CGI_10007754; scaffold42788 WUBlastX LINE_L2 26088 26396 110 - . . scaffold42788 GLEAN mRNA 26127 26471 0.998319 - . ID=CGI_10007754; scaffold42788 WUBlastX LINE_CR1-L2 26127 26471 21 - . . scaffold42788 GLEAN mRNA 40622 40680 0.998319 - . ID=CGI_10007754; scaffold42788 TRF Tandem_Repeat 40622 40680 59 + . . scaffold42788 GLEAN mRNA 40881 40965 0.998319 - . ID=CGI_10007754; scaffold42788 TRF Tandem_Repeat 40881 40965 170 + . . scaffold42788 GLEAN mRNA 55891 55923 0.998319 - . ID=CGI_10007754; scaffold42788 TRF Tandem_Repeat 55891 55923 66 + . . scaffold42788 GLEAN mRNA 61136 61176 0.998319 - . ID=CGI_10007754; scaffold42788 TRF Tandem_Repeat 61136 61176 82 + . . scaffold42788 GLEAN mRNA 61286 61597 0.998319 - . ID=CGI_10007754; scaffold42788 TRF Tandem_Repeat 61286 61597 244 + . . scaffold42788 GLEAN mRNA 67707 68066 0.998319 - . ID=CGI_10007754; scaffold42788 WUBlastX DNA_TcMar-Tc1 67707 68066 83 + . . scaffold42788 GLEAN mRNA 67237 67758 0.998319 - . ID=CGI_10007754; scaffold42788 WUBlastX DNA_TcMar-Tc1 67237 67758 49 + . . scaffold42788 GLEAN mRNA 67803 68123 0.998319 - . ID=CGI_10007754; scaffold42788 WUBlastX DNA_TcMar-Tc1 67803 68123 53 + . . scaffold42788 GLEAN mRNA 67803 68186 0.998319 - . ID=CGI_10007754; scaffold42788 WUBlastX DNA_TcMar-Tc1 67803 68186 32 + . . scaffold42788 GLEAN mRNA 84468 84501 0.998319 - . ID=CGI_10007754; scaffold42788 TRF Tandem_Repeat 84468 84501 50 + . . scaffold42788 GLEAN mRNA 104893 104980 0.339426 + . ID=CGI_10007755; scaffold42788 TRF Tandem_Repeat 104893 104980 81 + . . scaffold42788 GLEAN mRNA 105912 106076 0.339426 + . ID=CGI_10007755; scaffold42788 WUBlastX LINE_L1-Tx1 105912 106076 43 + . . scaffold42788 GLEAN mRNA 106079 106843 0.339426 + . ID=CGI_10007755; scaffold42788 WUBlastX LINE_L1-Tx1 106079 106843 60 + . . scaffold42788 GLEAN mRNA 106343 106813 0.339426 + . ID=CGI_10007755; scaffold42788 WUBlastX LINE_L1-Tx1 106343 106813 102 + . . scaffold42788 GLEAN mRNA 118044 118114 0.339426 + . ID=CGI_10007755; scaffold42788 TRF Tandem_Repeat 118044 118114 142 + . . scaffold42788 GLEAN mRNA 123893 124243 0.339426 + . ID=CGI_10007755; scaffold42788 WUBlastX LINE_L1-Tx1 123893 124243 89 - . . scaffold42788 GLEAN mRNA 132895 132929 0.339426 + . ID=CGI_10007755; scaffold42788 TRF Tandem_Repeat 132895 132929 70 + . . scaffold42788 GLEAN mRNA 138499 138524 0.339426 + . ID=CGI_10007755; scaffold42788 TRF Tandem_Repeat 138499 138524 52 + . . scaffold218 GLEAN mRNA 5854 5882 0.999922 + . ID=CGI_10007758; scaffold218 TRF Tandem_Repeat 5854 5882 58 + . . scaffold218 GLEAN mRNA 5916 5970 0.999922 + . ID=CGI_10007758; scaffold218 TRF Tandem_Repeat 5916 5970 110 + . . scaffold218 GLEAN mRNA 39668 39702 0.890688 - . ID=CGI_10007761; scaffold218 TRF Tandem_Repeat 39668 39702 52 + . . scaffold218 GLEAN mRNA 86859 86901 0.614409 + . ID=CGI_10007762; scaffold218 TRF Tandem_Repeat 86859 86901 86 + . . scaffold218 GLEAN mRNA 108950 109002 0.658717 - . ID=CGI_10007764; scaffold218 TRF Tandem_Repeat 108950 109002 70 + . . scaffold218 GLEAN mRNA 108950 109002 0.658717 - . ID=CGI_10007764; scaffold218 TRF Tandem_Repeat 108950 109002 70 + . . scaffold218 GLEAN mRNA 127022 127366 0.658717 - . ID=CGI_10007764; scaffold218 TRF Tandem_Repeat 127022 127366 384 + . . scaffold218 GLEAN mRNA 127020 127366 0.658717 - . ID=CGI_10007764; scaffold218 TRF Tandem_Repeat 127020 127366 464 + . . scaffold218 GLEAN mRNA 127022 127366 0.658717 - . ID=CGI_10007764; scaffold218 TRF Tandem_Repeat 127022 127366 384 + . . scaffold218 GLEAN mRNA 128011 128398 0.658717 - . ID=CGI_10007764; scaffold218 TRF Tandem_Repeat 128011 128398 488 + . . scaffold218 GLEAN mRNA 128011 128398 0.658717 - . ID=CGI_10007764; scaffold218 TRF Tandem_Repeat 128011 128398 488 + . . scaffold218 GLEAN mRNA 128011 128398 0.658717 - . ID=CGI_10007764; scaffold218 TRF Tandem_Repeat 128011 128398 488 + . . scaffold218 GLEAN mRNA 131244 131473 0.658717 - . ID=CGI_10007764; scaffold218 TRF Tandem_Repeat 131244 131473 262 + . . scaffold218 GLEAN mRNA 131346 131446 0.658717 - . ID=CGI_10007764; scaffold218 TRF Tandem_Repeat 131346 131446 66 + . . scaffold218 GLEAN mRNA 108950 109002 0.998821 + . ID=CGI_10007765; scaffold218 TRF Tandem_Repeat 108950 109002 70 + . . scaffold218 GLEAN mRNA 108950 109002 0.998821 + . ID=CGI_10007765; scaffold218 TRF Tandem_Repeat 108950 109002 70 + . . scaffold366 GLEAN mRNA 10694 10732 0.308663 - . ID=CGI_10007770; scaffold366 TRF Tandem_Repeat 10694 10732 53 + . . scaffold366 GLEAN mRNA 11619 11789 0.308663 - . ID=CGI_10007770; scaffold366 WUBlastX DNA_Novosib 11619 11789 30 + . . scaffold366 GLEAN mRNA 11652 11804 0.308663 - . ID=CGI_10007770; scaffold366 WUBlastX LTR_Gypsy 11652 11804 89 + . . scaffold366 GLEAN mRNA 10694 10732 1 + . ID=CGI_10007771; scaffold366 TRF Tandem_Repeat 10694 10732 53 + . . scaffold366 GLEAN mRNA 13994 14081 1 + . ID=CGI_10007771; scaffold366 TRF Tandem_Repeat 13994 14081 118 + . . scaffold366 GLEAN mRNA 11619 11789 1 + . ID=CGI_10007771; scaffold366 WUBlastX DNA_Novosib 11619 11789 30 + . . scaffold366 GLEAN mRNA 11652 11804 1 + . ID=CGI_10007771; scaffold366 WUBlastX LTR_Gypsy 11652 11804 89 + . . scaffold366 GLEAN mRNA 18636 18662 1 + . ID=CGI_10007771; scaffold366 TRF Tandem_Repeat 18636 18662 54 + . . scaffold366 GLEAN mRNA 25495 25695 1 + . ID=CGI_10007771; scaffold366 WUBlastX LTR_Pao 25495 25695 36 + . . scaffold366 GLEAN mRNA 41247 41750 0.999676 - . ID=CGI_10007772; scaffold366 TRF Tandem_Repeat 41247 41750 536 + . . scaffold366 GLEAN mRNA 42011 42387 0.999676 - . ID=CGI_10007772; scaffold366 TRF Tandem_Repeat 42011 42387 337 + . . scaffold366 GLEAN mRNA 68170 70871 0.99068 + . ID=CGI_10007774; scaffold366 TRF Tandem_Repeat 68170 70871 1280 + . . scaffold366 GLEAN mRNA 68170 69450 0.99068 + . ID=CGI_10007774; scaffold366 TRF Tandem_Repeat 68170 69450 1270 + . . scaffold366 GLEAN mRNA 69765 71016 0.99068 + . ID=CGI_10007774; scaffold366 TRF Tandem_Repeat 69765 71016 2359 + . . scaffold366 GLEAN mRNA 77213 78152 0.99068 + . ID=CGI_10007774; scaffold366 TRF Tandem_Repeat 77213 78152 1023 + . . scaffold366 GLEAN mRNA 88146 88880 0.99068 + . ID=CGI_10007774; scaffold366 TRF Tandem_Repeat 88146 88880 1149 + . . scaffold366 GLEAN mRNA 109346 109398 0.490969 + . ID=CGI_10007776; scaffold366 TRF Tandem_Repeat 109346 109398 106 + . . scaffold366 GLEAN mRNA 108543 109022 0.490969 + . ID=CGI_10007776; scaffold366 WUBlastX DNA_Harbinger 108543 109022 212 - . . scaffold366 GLEAN mRNA 107351 107827 0.490969 + . ID=CGI_10007776; scaffold366 WUBlastX DNA_Harbinger 107351 107827 419 + . . scaffold366 GLEAN mRNA 106924 107355 0.490969 + . ID=CGI_10007776; scaffold366 WUBlastX DNA_Harbinger 106924 107355 193 + . . scaffold366 GLEAN mRNA 117912 117958 0.490969 + . ID=CGI_10007776; scaffold366 TRF Tandem_Repeat 117912 117958 85 + . . scaffold366 GLEAN mRNA 119128 119361 0.490969 + . ID=CGI_10007776; scaffold366 WUBlastX DNA_Harbinger 119128 119361 82 - . . scaffold366 GLEAN mRNA 119340 119579 0.490969 + . ID=CGI_10007776; scaffold366 WUBlastX DNA_Harbinger 119340 119579 92 - . . scaffold366 GLEAN mRNA 117429 117698 0.490969 + . ID=CGI_10007776; scaffold366 WUBlastX DNA_Harbinger 117429 117698 107 + . . scaffold366 GLEAN mRNA 119074 119382 0.490969 + . ID=CGI_10007776; scaffold366 WUBlastX DNA_Harbinger 119074 119382 79 - . . scaffold366 GLEAN mRNA 119188 119361 0.490969 + . ID=CGI_10007776; scaffold366 WUBlastX DNA_Harbinger 119188 119361 92 - . . scaffold366 GLEAN mRNA 124177 124227 0.990718 + . ID=CGI_10007777; scaffold366 TRF Tandem_Repeat 124177 124227 102 + . . scaffold366 GLEAN mRNA 127152 127231 0.990718 + . ID=CGI_10007777; scaffold366 TRF Tandem_Repeat 127152 127231 160 + . . scaffold366 GLEAN mRNA 128542 128660 0.990718 + . ID=CGI_10007777; scaffold366 TRF Tandem_Repeat 128542 128660 168 + . . scaffold42804 GLEAN mRNA 79734 80054 0.910125 + . ID=CGI_10007779; scaffold42804 WUBlastX LTR_Gypsy-Cigr 79734 80054 69 - . . scaffold42804 GLEAN mRNA 83228 83320 0.910125 + . ID=CGI_10007779; scaffold42804 TRF Tandem_Repeat 83228 83320 143 + . . scaffold42804 GLEAN mRNA 84054 84187 0.910125 + . ID=CGI_10007779; scaffold42804 TRF Tandem_Repeat 84054 84187 112 + . . scaffold42804 GLEAN mRNA 158850 159218 0.799839 - . ID=CGI_10007780; scaffold42804 WUBlastX LINE_L1-Tx1 158850 159218 61 - . . scaffold42804 GLEAN mRNA 158829 159371 0.799839 - . ID=CGI_10007780; scaffold42804 WUBlastX LINE_L1 158829 159371 39 - . . scaffold42804 GLEAN mRNA 173383 173417 0.970009 + . ID=CGI_10007781; scaffold42804 TRF Tandem_Repeat 173383 173417 61 + . . scaffold1456 GLEAN mRNA 143729 144156 0.999855 + . ID=CGI_10007784; scaffold1456 TRF Tandem_Repeat 143729 144156 676 + . . scaffold1456 GLEAN mRNA 147292 147321 0.499837 - . ID=CGI_10007785; scaffold1456 TRF Tandem_Repeat 147292 147321 60 + . . scaffold1456 GLEAN mRNA 188071 188291 1 - . ID=CGI_10007787; scaffold1456 TRF Tandem_Repeat 188071 188291 302 + . . scaffold1456 GLEAN mRNA 189077 189216 1 - . ID=CGI_10007787; scaffold1456 TRF Tandem_Repeat 189077 189216 122 + . . scaffold1155 GLEAN mRNA 5093 5137 1 + . ID=CGI_10007788; scaffold1155 TRF Tandem_Repeat 5093 5137 81 + . . scaffold1155 GLEAN mRNA 17336 17402 0.999925 - . ID=CGI_10007790; scaffold1155 TRF Tandem_Repeat 17336 17402 134 + . . scaffold1155 GLEAN mRNA 30239 30309 1 - . ID=CGI_10007791; scaffold1155 TRF Tandem_Repeat 30239 30309 115 + . . scaffold1155 GLEAN mRNA 30239 30309 0.998855 + . ID=CGI_10007792; scaffold1155 TRF Tandem_Repeat 30239 30309 115 + . . scaffold1155 GLEAN mRNA 36401 36538 0.998855 + . ID=CGI_10007792; scaffold1155 TRF Tandem_Repeat 36401 36538 66 + . . scaffold1155 GLEAN mRNA 42945 43006 0.998855 + . ID=CGI_10007792; scaffold1155 TRF Tandem_Repeat 42945 43006 124 + . . scaffold1155 GLEAN mRNA 44160 45286 0.998855 + . ID=CGI_10007792; scaffold1155 TRF Tandem_Repeat 44160 45286 1670 + . . scaffold1155 GLEAN mRNA 54526 54583 0.998855 + . ID=CGI_10007792; scaffold1155 TRF Tandem_Repeat 54526 54583 91 + . . scaffold1155 GLEAN mRNA 54526 54583 0.998855 + . ID=CGI_10007792; scaffold1155 TRF Tandem_Repeat 54526 54583 73 + . . scaffold1155 GLEAN mRNA 54538 54583 0.998855 + . ID=CGI_10007792; scaffold1155 TRF Tandem_Repeat 54538 54583 65 + . . scaffold1155 GLEAN mRNA 57046 57116 0.998855 + . ID=CGI_10007792; scaffold1155 TRF Tandem_Repeat 57046 57116 142 + . . scaffold1155 GLEAN mRNA 183866 183943 0.838121 + . ID=CGI_10007798; scaffold1155 WUBlastX LTR_Gypsy 183866 183943 22 + . . scaffold1155 GLEAN mRNA 183540 183689 0.838121 + . ID=CGI_10007798; scaffold1155 WUBlastX LTR_Gypsy 183540 183689 26 + . . scaffold1508 GLEAN mRNA 33105 33160 0.813369 - . ID=CGI_10007801; scaffold1508 TRF Tandem_Repeat 33105 33160 78 + . . scaffold1508 GLEAN mRNA 42742 42967 0.813369 - . ID=CGI_10007801; scaffold1508 TRF Tandem_Repeat 42742 42967 337 + . . scaffold1508 GLEAN mRNA 67372 67430 0.813369 - . ID=CGI_10007801; scaffold1508 TRF Tandem_Repeat 67372 67430 118 + . . scaffold1508 GLEAN mRNA 97198 97240 0.989894 + . ID=CGI_10007803; scaffold1508 TRF Tandem_Repeat 97198 97240 86 + . . scaffold1508 GLEAN mRNA 98520 98572 0.989894 + . ID=CGI_10007803; scaffold1508 TRF Tandem_Repeat 98520 98572 97 + . . scaffold1508 GLEAN mRNA 110634 110688 1 + . ID=CGI_10007804; scaffold1508 TRF Tandem_Repeat 110634 110688 110 + . . scaffold1508 GLEAN mRNA 117132 117228 0.499376 - . ID=CGI_10007806; scaffold1508 TRF Tandem_Repeat 117132 117228 103 + . . scaffold1508 GLEAN mRNA 117146 117216 0.499376 - . ID=CGI_10007806; scaffold1508 TRF Tandem_Repeat 117146 117216 87 + . . scaffold1508 GLEAN mRNA 119156 119203 0.499376 - . ID=CGI_10007806; scaffold1508 TRF Tandem_Repeat 119156 119203 51 + . . scaffold1508 GLEAN mRNA 119159 119203 0.499376 - . ID=CGI_10007806; scaffold1508 TRF Tandem_Repeat 119159 119203 72 + . . scaffold1508 GLEAN mRNA 132588 132649 0.499376 - . ID=CGI_10007806; scaffold1508 TRF Tandem_Repeat 132588 132649 124 + . . scaffold1508 GLEAN mRNA 141328 142078 0.499376 - . ID=CGI_10007806; scaffold1508 TRF Tandem_Repeat 141328 142078 1020 + . . scaffold1508 GLEAN mRNA 143699 144730 0.499376 - . ID=CGI_10007806; scaffold1508 WUBlastX DNA_TcMar-Tc1 143699 144730 417 + . . scaffold1508 GLEAN mRNA 132588 132649 0.871056 + . ID=CGI_10007807; scaffold1508 TRF Tandem_Repeat 132588 132649 124 + . . scaffold1508 GLEAN mRNA 141328 142078 0.871056 + . ID=CGI_10007807; scaffold1508 TRF Tandem_Repeat 141328 142078 1020 + . . scaffold1508 GLEAN mRNA 155653 155723 0.989916 + . ID=CGI_10007809; scaffold1508 TRF Tandem_Repeat 155653 155723 88 + . . scaffold1508 GLEAN mRNA 155653 155714 0.989916 + . ID=CGI_10007809; scaffold1508 TRF Tandem_Repeat 155653 155714 70 + . . scaffold1508 GLEAN mRNA 156554 156602 0.989916 + . ID=CGI_10007809; scaffold1508 TRF Tandem_Repeat 156554 156602 82 + . . scaffold1508 GLEAN mRNA 160161 160204 0.989916 + . ID=CGI_10007809; scaffold1508 TRF Tandem_Repeat 160161 160204 88 + . . scaffold1572 GLEAN mRNA 4679 4737 1 + . ID=CGI_10007810; scaffold1572 TRF Tandem_Repeat 4679 4737 50 + . . scaffold1572 GLEAN mRNA 47202 47440 0.999943 - . ID=CGI_10007811; scaffold1572 TRF Tandem_Repeat 47202 47440 424 + . . scaffold1572 GLEAN mRNA 60419 60456 0.99996 + . ID=CGI_10007812; scaffold1572 TRF Tandem_Repeat 60419 60456 58 + . . scaffold1572 GLEAN mRNA 80559 80609 1 + . ID=CGI_10007816; scaffold1572 TRF Tandem_Repeat 80559 80609 75 + . . scaffold1572 GLEAN mRNA 105144 106012 1 + . ID=CGI_10007819; scaffold1572 TRF Tandem_Repeat 105144 106012 1038 + . . scaffold1572 GLEAN mRNA 109526 109782 1 + . ID=CGI_10007819; scaffold1572 TRF Tandem_Repeat 109526 109782 180 + . . scaffold1572 GLEAN mRNA 109492 109798 1 + . ID=CGI_10007819; scaffold1572 TRF Tandem_Repeat 109492 109798 157 + . . scaffold1572 GLEAN mRNA 113384 114076 1 + . ID=CGI_10007819; scaffold1572 TRF Tandem_Repeat 113384 114076 621 + . . scaffold1572 GLEAN mRNA 113415 114076 1 + . ID=CGI_10007819; scaffold1572 TRF Tandem_Repeat 113415 114076 447 + . . scaffold1572 GLEAN mRNA 113383 114076 1 + . ID=CGI_10007819; scaffold1572 TRF Tandem_Repeat 113383 114076 449 + . . scaffold1572 GLEAN mRNA 123431 123577 0.973001 + . ID=CGI_10007820; scaffold1572 TRF Tandem_Repeat 123431 123577 161 + . . scaffold1572 GLEAN mRNA 136012 136770 1 + . ID=CGI_10007822; scaffold1572 TRF Tandem_Repeat 136012 136770 1134 + . . scaffold1572 GLEAN mRNA 138468 138520 1 + . ID=CGI_10007822; scaffold1572 TRF Tandem_Repeat 138468 138520 106 + . . scaffold1572 GLEAN mRNA 140730 141086 1 + . ID=CGI_10007822; scaffold1572 TRF Tandem_Repeat 140730 141086 187 + . . scaffold1572 GLEAN mRNA 141151 141277 1 + . ID=CGI_10007822; scaffold1572 TRF Tandem_Repeat 141151 141277 139 + . . scaffold1572 GLEAN mRNA 141150 141292 1 + . ID=CGI_10007822; scaffold1572 TRF Tandem_Repeat 141150 141292 109 + . . scaffold1572 GLEAN mRNA 157354 157405 0.999144 - . ID=CGI_10007823; scaffold1572 TRF Tandem_Repeat 157354 157405 104 + . . scaffold42840 GLEAN mRNA 3697 4022 0.998904 + . ID=CGI_10007830; scaffold42840 TRF Tandem_Repeat 3697 4022 517 + . . scaffold42840 GLEAN mRNA 2609 3058 0.998904 + . ID=CGI_10007830; scaffold42840 WUBlastX LINE_RTE-X 2609 3058 126 + . . scaffold42840 GLEAN mRNA 2606 3184 0.998904 + . ID=CGI_10007830; scaffold42840 WUBlastX LINE_RTE-X 2606 3184 103 + . . scaffold42840 GLEAN mRNA 63700 65076 0.754681 + . ID=CGI_10007833; scaffold42840 WUBlastX LINE_L2 63700 65076 42 - . . scaffold42840 GLEAN mRNA 62469 63494 0.754681 + . ID=CGI_10007833; scaffold42840 WUBlastX LINE_RTE-X 62469 63494 437 - . . scaffold42840 GLEAN mRNA 63487 64734 0.754681 + . ID=CGI_10007833; scaffold42840 WUBlastX LINE_RTE-X 63487 64734 644 - . . scaffold42840 GLEAN mRNA 72680 72961 0.999689 + . ID=CGI_10007834; scaffold42840 TRF Tandem_Repeat 72680 72961 485 + . . scaffold42840 GLEAN mRNA 72818 72927 0.999689 + . ID=CGI_10007834; scaffold42840 TRF Tandem_Repeat 72818 72927 61 + . . scaffold42840 GLEAN mRNA 104078 104231 0.994857 - . ID=CGI_10007835; scaffold42840 TRF Tandem_Repeat 104078 104231 68 + . . scaffold42840 GLEAN mRNA 120166 120570 0.994857 - . ID=CGI_10007835; scaffold42840 WUBlastX DNA_Crypton 120166 120570 88 - . . scaffold42840 GLEAN mRNA 120298 120549 0.994857 - . ID=CGI_10007835; scaffold42840 WUBlastX DNA_Crypton 120298 120549 98 - . . scaffold42840 GLEAN mRNA 139279 139791 0.999472 - . ID=CGI_10007836; scaffold42840 WUBlastX LINE_RTE-X 139279 139791 161 + . . scaffold42840 GLEAN mRNA 139411 139779 0.999472 - . ID=CGI_10007836; scaffold42840 WUBlastX LINE_RTE-X 139411 139779 180 + . . scaffold42840 GLEAN mRNA 153196 153223 0.783335 - . ID=CGI_10007837; scaffold42840 TRF Tandem_Repeat 153196 153223 56 + . . scaffold42840 GLEAN mRNA 180682 180729 0.833079 - . ID=CGI_10007840; scaffold42840 TRF Tandem_Repeat 180682 180729 96 + . . scaffold42840 GLEAN mRNA 188273 188380 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX LINE_L2 188273 188380 70 + . . scaffold42840 GLEAN mRNA 188219 188365 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX LINE_L2 188219 188365 34 + . . scaffold42840 GLEAN mRNA 190885 191133 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX LINE_CR1 190885 191133 103 + . . scaffold42840 GLEAN mRNA 188383 188742 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX LINE_L2 188383 188742 201 + . . scaffold42840 GLEAN mRNA 190822 191133 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX LINE_CR1 190822 191133 55 + . . scaffold42840 GLEAN mRNA 188246 188380 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX LINE_L2 188246 188380 61 + . . scaffold42840 GLEAN mRNA 188371 189366 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX LINE_L2 188371 189366 105 + . . scaffold42840 GLEAN mRNA 191157 191456 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX LINE_CR1 191157 191456 119 + . . scaffold42840 GLEAN mRNA 190796 190918 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX LINE_CR1 190796 190918 46 + . . scaffold42840 GLEAN mRNA 190754 190870 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX LINE_CR1 190754 190870 23 + . . scaffold42840 GLEAN mRNA 187971 188168 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX LINE_CR1 187971 188168 24 + . . scaffold42840 GLEAN mRNA 186057 186464 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX DNA_TcMar-Marin 186057 186464 87 - . . scaffold42840 GLEAN mRNA 185706 185801 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX DNA_TcMar-Marin 185706 185801 45 - . . scaffold42840 GLEAN mRNA 185845 185991 0.833079 - . ID=CGI_10007840; scaffold42840 WUBlastX DNA_TcMar-Marin 185845 185991 32 - . . scaffold240 GLEAN mRNA 159931 160113 0.999253 - . ID=CGI_10007850; scaffold240 WUBlastX LINE_CR1-L2 159931 160113 65 - . . scaffold240 GLEAN mRNA 164141 164185 0.999253 - . ID=CGI_10007850; scaffold240 TRF Tandem_Repeat 164141 164185 72 + . . scaffold240 GLEAN mRNA 164141 164188 0.999253 - . ID=CGI_10007850; scaffold240 TRF Tandem_Repeat 164141 164188 51 + . . scaffold240 GLEAN mRNA 170609 170725 1 + . ID=CGI_10007851; scaffold240 WUBlastX LINE_Penelope 170609 170725 28 + . . scaffold240 GLEAN mRNA 170763 171167 1 + . ID=CGI_10007851; scaffold240 WUBlastX LINE_Penelope 170763 171167 106 + . . scaffold240 GLEAN mRNA 170639 170818 1 + . ID=CGI_10007851; scaffold240 WUBlastX LINE_Penelope 170639 170818 58 + . . scaffold42836 GLEAN mRNA 38877 38921 0.999927 - . ID=CGI_10007855; scaffold42836 TRF Tandem_Repeat 38877 38921 90 + . . scaffold42836 GLEAN mRNA 72601 72669 0.999133 + . ID=CGI_10007859; scaffold42836 TRF Tandem_Repeat 72601 72669 138 + . . scaffold42836 GLEAN mRNA 73566 73614 0.999133 + . ID=CGI_10007859; scaffold42836 TRF Tandem_Repeat 73566 73614 50 + . . scaffold42836 GLEAN mRNA 78666 78712 0.999133 + . ID=CGI_10007859; scaffold42836 TRF Tandem_Repeat 78666 78712 85 + . . scaffold42836 GLEAN mRNA 106777 106942 0.986039 + . ID=CGI_10007860; scaffold42836 TRF Tandem_Repeat 106777 106942 296 + . . scaffold42836 GLEAN mRNA 111618 111669 0.986039 + . ID=CGI_10007860; scaffold42836 TRF Tandem_Repeat 111618 111669 68 + . . scaffold42836 GLEAN mRNA 107168 107269 0.986039 + . ID=CGI_10007860; scaffold42836 WUBlastX LTR_Gypsy 107168 107269 25 + . . scaffold42836 GLEAN mRNA 114514 114642 0.986039 + . ID=CGI_10007860; scaffold42836 WUBlastX LTR_Gypsy 114514 114642 31 + . . scaffold42836 GLEAN mRNA 111934 111987 0.986039 + . ID=CGI_10007860; scaffold42836 WUBlastX LTR_Gypsy 111934 111987 28 + . . scaffold42836 GLEAN mRNA 117467 117529 0.986039 + . ID=CGI_10007860; scaffold42836 TRF Tandem_Repeat 117467 117529 126 + . . scaffold42836 GLEAN mRNA 132007 132066 0.238545 + . ID=CGI_10007861; scaffold42836 TRF Tandem_Repeat 132007 132066 61 + . . scaffold42836 GLEAN mRNA 135631 135671 0.238545 + . ID=CGI_10007861; scaffold42836 TRF Tandem_Repeat 135631 135671 82 + . . scaffold42836 GLEAN mRNA 135721 135770 0.238545 + . ID=CGI_10007861; scaffold42836 TRF Tandem_Repeat 135721 135770 91 + . . scaffold42836 GLEAN mRNA 144342 144387 1 + . ID=CGI_10007862; scaffold42836 TRF Tandem_Repeat 144342 144387 92 + . . scaffold42836 GLEAN mRNA 151034 151707 1 + . ID=CGI_10007862; scaffold42836 TRF Tandem_Repeat 151034 151707 1143 + . . scaffold42836 GLEAN mRNA 155717 155758 1 + . ID=CGI_10007862; scaffold42836 TRF Tandem_Repeat 155717 155758 75 + . . scaffold42836 GLEAN mRNA 157976 158023 1 + . ID=CGI_10007862; scaffold42836 TRF Tandem_Repeat 157976 158023 96 + . . scaffold42836 GLEAN mRNA 160479 160659 1 + . ID=CGI_10007862; scaffold42836 TRF Tandem_Repeat 160479 160659 132 + . . scaffold42836 GLEAN mRNA 160479 160863 1 + . ID=CGI_10007862; scaffold42836 TRF Tandem_Repeat 160479 160863 413 + . . scaffold42836 GLEAN mRNA 160951 161413 1 + . ID=CGI_10007862; scaffold42836 TRF Tandem_Repeat 160951 161413 719 + . . scaffold42836 GLEAN mRNA 161416 161508 1 + . ID=CGI_10007862; scaffold42836 WUBlastX LTR_Gypsy 161416 161508 21 + . . scaffold42836 GLEAN mRNA 172684 172727 1 + . ID=CGI_10007862; scaffold42836 TRF Tandem_Repeat 172684 172727 52 + . . scaffold42836 GLEAN mRNA 179501 179537 1 + . ID=CGI_10007862; scaffold42836 TRF Tandem_Repeat 179501 179537 74 + . . scaffold42836 GLEAN mRNA 167153 168379 1 + . ID=CGI_10007862; scaffold42836 WUBlastX LINE_RTE-X 167153 168379 392 + . . scaffold42836 GLEAN mRNA 168758 168832 1 + . ID=CGI_10007862; scaffold42836 WUBlastX LINE_CR1 168758 168832 21 + . . scaffold42836 GLEAN mRNA 189264 189335 1 + . ID=CGI_10007863; scaffold42836 TRF Tandem_Repeat 189264 189335 108 + . . scaffold42836 GLEAN mRNA 189264 189332 1 + . ID=CGI_10007863; scaffold42836 TRF Tandem_Repeat 189264 189332 102 + . . scaffold1791 GLEAN mRNA 28373 28434 0.405413 + . ID=CGI_10007865; scaffold1791 TRF Tandem_Repeat 28373 28434 115 + . . scaffold1791 GLEAN mRNA 33419 33595 0.405413 + . ID=CGI_10007865; scaffold1791 TRF Tandem_Repeat 33419 33595 156 + . . scaffold1791 GLEAN mRNA 34009 34279 0.405413 + . ID=CGI_10007865; scaffold1791 TRF Tandem_Repeat 34009 34279 116 + . . scaffold1791 GLEAN mRNA 34008 34278 0.405413 + . ID=CGI_10007865; scaffold1791 TRF Tandem_Repeat 34008 34278 233 + . . scaffold1791 GLEAN mRNA 34060 34169 0.405413 + . ID=CGI_10007865; scaffold1791 TRF Tandem_Repeat 34060 34169 104 + . . scaffold1791 GLEAN mRNA 67577 67939 0.835531 + . ID=CGI_10007866; scaffold1791 WUBlastX LINE_L1 67577 67939 32 + . . scaffold1791 GLEAN mRNA 91662 91764 0.896369 - . ID=CGI_10007868; scaffold1791 TRF Tandem_Repeat 91662 91764 161 + . . scaffold1791 GLEAN mRNA 91662 91764 0.896369 - . ID=CGI_10007868; scaffold1791 TRF Tandem_Repeat 91662 91764 161 + . . scaffold1791 GLEAN mRNA 91662 91764 0.896369 - . ID=CGI_10007868; scaffold1791 TRF Tandem_Repeat 91662 91764 161 + . . scaffold1791 GLEAN mRNA 93524 93560 0.896369 - . ID=CGI_10007868; scaffold1791 TRF Tandem_Repeat 93524 93560 74 + . . scaffold1791 GLEAN mRNA 97092 97958 0.896369 - . ID=CGI_10007868; scaffold1791 WUBlastX LTR_Ngaro 97092 97958 114 + . . scaffold1791 GLEAN mRNA 97305 97916 0.896369 - . ID=CGI_10007868; scaffold1791 WUBlastX LTR_Ngaro 97305 97916 185 + . . scaffold1791 GLEAN mRNA 97278 97706 0.896369 - . ID=CGI_10007868; scaffold1791 WUBlastX LTR_Ngaro 97278 97706 196 + . . scaffold1791 GLEAN mRNA 100562 100831 0.896369 - . ID=CGI_10007868; scaffold1791 WUBlastX LTR_Ngaro 100562 100831 100 + . . scaffold1791 GLEAN mRNA 99465 100451 0.896369 - . ID=CGI_10007868; scaffold1791 WUBlastX LTR_Ngaro 99465 100451 362 + . . scaffold1791 GLEAN mRNA 97930 99558 0.896369 - . ID=CGI_10007868; scaffold1791 WUBlastX LTR_Ngaro 97930 99558 997 + . . scaffold1697 GLEAN mRNA 12856 13128 0.983491 + . ID=CGI_10007876; scaffold1697 WUBlastX LTR_Copia 12856 13128 52 + . . scaffold1697 GLEAN mRNA 12451 13140 0.983491 + . ID=CGI_10007876; scaffold1697 WUBlastX LTR_Gypsy-Cigr 12451 13140 41 + . . scaffold1697 GLEAN mRNA 12913 13116 0.983491 + . ID=CGI_10007876; scaffold1697 WUBlastX LTR_ERV1 12913 13116 53 + . . scaffold1697 GLEAN mRNA 64296 64347 0.512292 - . ID=CGI_10007878; scaffold1697 TRF Tandem_Repeat 64296 64347 97 + . . scaffold1697 GLEAN mRNA 67270 67316 0.512292 - . ID=CGI_10007878; scaffold1697 TRF Tandem_Repeat 67270 67316 69 + . . scaffold1697 GLEAN mRNA 106039 106102 0.999861 - . ID=CGI_10007879; scaffold1697 TRF Tandem_Repeat 106039 106102 128 + . . scaffold1697 GLEAN mRNA 106096 106145 0.999861 - . ID=CGI_10007879; scaffold1697 TRF Tandem_Repeat 106096 106145 93 + . . scaffold1651 GLEAN mRNA 2748 2797 0.886062 - . ID=CGI_10007883; scaffold1651 TRF Tandem_Repeat 2748 2797 84 + . . scaffold1651 GLEAN mRNA 2940 2983 0.886062 - . ID=CGI_10007883; scaffold1651 TRF Tandem_Repeat 2940 2983 88 + . . scaffold1651 GLEAN mRNA 4076 5133 0.886062 - . ID=CGI_10007883; scaffold1651 TRF Tandem_Repeat 4076 5133 1153 + . . scaffold1651 GLEAN mRNA 53554 53636 1 + . ID=CGI_10007887; scaffold1651 TRF Tandem_Repeat 53554 53636 66 + . . scaffold1651 GLEAN mRNA 53536 53635 1 + . ID=CGI_10007887; scaffold1651 TRF Tandem_Repeat 53536 53635 67 + . . scaffold1651 GLEAN mRNA 53557 53607 1 + . ID=CGI_10007887; scaffold1651 TRF Tandem_Repeat 53557 53607 66 + . . scaffold1651 GLEAN mRNA 65256 65534 0.999027 + . ID=CGI_10007888; scaffold1651 WUBlastX DNA_TcMar-Tc1 65256 65534 79 - . . scaffold1651 GLEAN mRNA 66802 66867 0.999027 + . ID=CGI_10007888; scaffold1651 WUBlastX DNA_TcMar-Tc1 66802 66867 22 - . . scaffold1651 GLEAN mRNA 67261 67590 0.999027 + . ID=CGI_10007888; scaffold1651 WUBlastX DNA_TcMar-Tc1 67261 67590 91 - . . scaffold1651 GLEAN mRNA 73961 74479 0.997685 - . ID=CGI_10007889; scaffold1651 WUBlastX DNA_Kolobok-IS4 73961 74479 94 - . . scaffold1651 GLEAN mRNA 78770 79376 1 + . ID=CGI_10007890; scaffold1651 TRF Tandem_Repeat 78770 79376 1061 + . . scaffold1651 GLEAN mRNA 88813 89289 0.99961 - . ID=CGI_10007891; scaffold1651 TRF Tandem_Repeat 88813 89289 526 + . . scaffold1651 GLEAN mRNA 103502 103594 1 - . ID=CGI_10007892; scaffold1651 TRF Tandem_Repeat 103502 103594 73 + . . scaffold1500 GLEAN mRNA 120102 120159 0.987163 + . ID=CGI_10007897; scaffold1500 TRF Tandem_Repeat 120102 120159 107 + . . scaffold1500 GLEAN mRNA 131253 131303 0.987163 + . ID=CGI_10007897; scaffold1500 TRF Tandem_Repeat 131253 131303 72 + . . scaffold1500 GLEAN mRNA 177829 177864 0.692586 - . ID=CGI_10007900; scaffold1500 TRF Tandem_Repeat 177829 177864 72 + . . scaffold1500 GLEAN mRNA 187786 187825 0.692586 - . ID=CGI_10007900; scaffold1500 TRF Tandem_Repeat 187786 187825 80 + . . scaffold1500 GLEAN mRNA 185375 185680 0.692586 - . ID=CGI_10007900; scaffold1500 WUBlastX LTR_Gypsy 185375 185680 156 - . . scaffold1500 GLEAN mRNA 185661 186290 0.692586 - . ID=CGI_10007900; scaffold1500 WUBlastX LTR_Gypsy 185661 186290 506 - . . scaffold1500 GLEAN mRNA 185276 185683 0.692586 - . ID=CGI_10007900; scaffold1500 WUBlastX LTR_Gypsy 185276 185683 147 - . . scaffold1500 GLEAN mRNA 185685 186218 0.692586 - . ID=CGI_10007900; scaffold1500 WUBlastX LTR_Gypsy 185685 186218 509 - . . scaffold1373 GLEAN mRNA 4984 5246 1 - . ID=CGI_10007903; scaffold1373 TRF Tandem_Repeat 4984 5246 384 + . . scaffold1373 GLEAN mRNA 1285 1884 1 - . ID=CGI_10007903; scaffold1373 WUBlastX LINE_RTE-X 1285 1884 147 + . . scaffold1373 GLEAN mRNA 1297 2019 1 - . ID=CGI_10007903; scaffold1373 WUBlastX LINE_RTE-X 1297 2019 107 + . . scaffold1373 GLEAN mRNA 29613 29682 0.488375 - . ID=CGI_10007904; scaffold1373 TRF Tandem_Repeat 29613 29682 78 + . . scaffold1373 GLEAN mRNA 29773 29804 0.488375 - . ID=CGI_10007904; scaffold1373 TRF Tandem_Repeat 29773 29804 55 + . . scaffold1373 GLEAN mRNA 29889 29965 0.488375 - . ID=CGI_10007904; scaffold1373 TRF Tandem_Repeat 29889 29965 136 + . . scaffold1373 GLEAN mRNA 20958 22133 0.488375 - . ID=CGI_10007904; scaffold1373 WUBlastX LTR_Pao 20958 22133 1135 + . . scaffold1373 GLEAN mRNA 20958 22133 0.999368 + . ID=CGI_10007905; scaffold1373 WUBlastX LTR_Pao 20958 22133 1135 + . . scaffold1373 GLEAN mRNA 56110 56146 0.996819 + . ID=CGI_10007907; scaffold1373 TRF Tandem_Repeat 56110 56146 74 + . . scaffold1373 GLEAN mRNA 61144 61187 0.996819 + . ID=CGI_10007907; scaffold1373 TRF Tandem_Repeat 61144 61187 88 + . . scaffold1373 GLEAN mRNA 106291 106406 0.995871 + . ID=CGI_10007909; scaffold1373 TRF Tandem_Repeat 106291 106406 68 + . . scaffold1373 GLEAN mRNA 106216 106671 0.995871 + . ID=CGI_10007909; scaffold1373 TRF Tandem_Repeat 106216 106671 736 + . . scaffold1373 GLEAN mRNA 107805 107890 0.995871 + . ID=CGI_10007909; scaffold1373 TRF Tandem_Repeat 107805 107890 127 + . . scaffold1373 GLEAN mRNA 107805 107890 0.995871 + . ID=CGI_10007909; scaffold1373 TRF Tandem_Repeat 107805 107890 145 + . . scaffold1373 GLEAN mRNA 111771 112071 0.995871 + . ID=CGI_10007909; scaffold1373 TRF Tandem_Repeat 111771 112071 239 + . . scaffold1373 GLEAN mRNA 111699 112040 0.995871 + . ID=CGI_10007909; scaffold1373 TRF Tandem_Repeat 111699 112040 252 + . . scaffold1373 GLEAN mRNA 114457 114859 0.995871 + . ID=CGI_10007909; scaffold1373 TRF Tandem_Repeat 114457 114859 533 + . . scaffold1373 GLEAN mRNA 137435 137779 0.465822 + . ID=CGI_10007910; scaffold1373 WUBlastX DNA_hAT-Tip100 137435 137779 101 + . . scaffold1373 GLEAN mRNA 166900 167478 0.544675 - . ID=CGI_10007913; scaffold1373 WUBlastX LINE_Penelope 166900 167478 32 - . . scaffold42850 GLEAN mRNA 10738 11187 0.999996 + . ID=CGI_10007918; scaffold42850 WUBlastX LINE_RTE-X 10738 11187 73 + . . scaffold42850 GLEAN mRNA 10831 11076 0.999996 + . ID=CGI_10007918; scaffold42850 WUBlastX LINE_RTE-X 10831 11076 120 + . . scaffold42850 GLEAN mRNA 10726 11046 0.999996 + . ID=CGI_10007918; scaffold42850 WUBlastX LINE_RTE-X 10726 11046 105 + . . scaffold42850 GLEAN mRNA 23244 23593 1 - . ID=CGI_10007919; scaffold42850 TRF Tandem_Repeat 23244 23593 551 + . . scaffold42850 GLEAN mRNA 46347 47313 0.998379 - . ID=CGI_10007921; scaffold42850 TRF Tandem_Repeat 46347 47313 1569 + . . scaffold42850 GLEAN mRNA 47300 47524 0.998379 - . ID=CGI_10007921; scaffold42850 TRF Tandem_Repeat 47300 47524 409 + . . scaffold42850 GLEAN mRNA 47780 47842 0.998379 - . ID=CGI_10007921; scaffold42850 TRF Tandem_Repeat 47780 47842 126 + . . scaffold42850 GLEAN mRNA 52422 52453 0.998379 - . ID=CGI_10007921; scaffold42850 TRF Tandem_Repeat 52422 52453 64 + . . scaffold42850 GLEAN mRNA 65430 65456 0.998379 - . ID=CGI_10007921; scaffold42850 TRF Tandem_Repeat 65430 65456 54 + . . scaffold42850 GLEAN mRNA 66751 67044 0.998379 - . ID=CGI_10007921; scaffold42850 TRF Tandem_Repeat 66751 67044 66 + . . scaffold42850 GLEAN mRNA 66746 67593 0.998379 - . ID=CGI_10007921; scaffold42850 TRF Tandem_Repeat 66746 67593 1326 + . . scaffold42850 GLEAN mRNA 67876 67913 0.998379 - . ID=CGI_10007921; scaffold42850 TRF Tandem_Repeat 67876 67913 69 + . . scaffold42850 GLEAN mRNA 52422 52453 0.999668 + . ID=CGI_10007922; scaffold42850 TRF Tandem_Repeat 52422 52453 64 + . . scaffold42850 GLEAN mRNA 106323 106487 0.999999 + . ID=CGI_10007926; scaffold42850 TRF Tandem_Repeat 106323 106487 226 + . . scaffold42850 GLEAN mRNA 117309 117452 0.222296 - . ID=CGI_10007927; scaffold42850 TRF Tandem_Repeat 117309 117452 85 + . . scaffold42850 GLEAN mRNA 118463 119257 0.222296 - . ID=CGI_10007927; scaffold42850 TRF Tandem_Repeat 118463 119257 774 + . . scaffold42850 GLEAN mRNA 119303 119340 0.222296 - . ID=CGI_10007927; scaffold42850 TRF Tandem_Repeat 119303 119340 60 + . . scaffold42850 GLEAN mRNA 121536 121691 0.222296 - . ID=CGI_10007927; scaffold42850 TRF Tandem_Repeat 121536 121691 264 + . . scaffold42850 GLEAN mRNA 123863 123916 0.222296 - . ID=CGI_10007927; scaffold42850 TRF Tandem_Repeat 123863 123916 63 + . . scaffold42850 GLEAN mRNA 123864 123907 0.222296 - . ID=CGI_10007927; scaffold42850 TRF Tandem_Repeat 123864 123907 88 + . . scaffold42850 GLEAN mRNA 124988 125510 0.222296 - . ID=CGI_10007927; scaffold42850 TRF Tandem_Repeat 124988 125510 331 + . . scaffold42850 GLEAN mRNA 149650 149904 0.726799 + . ID=CGI_10007928; scaffold42850 TRF Tandem_Repeat 149650 149904 198 + . . scaffold42850 GLEAN mRNA 182504 182817 0.441004 + . ID=CGI_10007930; scaffold42850 TRF Tandem_Repeat 182504 182817 628 + . . scaffold42850 GLEAN mRNA 187706 187744 0.441004 + . ID=CGI_10007930; scaffold42850 TRF Tandem_Repeat 187706 187744 51 + . . scaffold42850 GLEAN mRNA 187707 187744 0.441004 + . ID=CGI_10007930; scaffold42850 TRF Tandem_Repeat 187707 187744 67 + . . scaffold42850 GLEAN mRNA 187914 188775 0.441004 + . ID=CGI_10007930; scaffold42850 TRF Tandem_Repeat 187914 188775 1400 + . . scaffold42850 GLEAN mRNA 190025 190447 0.441004 + . ID=CGI_10007930; scaffold42850 TRF Tandem_Repeat 190025 190447 524 + . . scaffold42850 GLEAN mRNA 193070 193545 0.441004 + . ID=CGI_10007930; scaffold42850 TRF Tandem_Repeat 193070 193545 717 + . . scaffold42850 GLEAN mRNA 182504 182817 0.973064 - . ID=CGI_10007931; scaffold42850 TRF Tandem_Repeat 182504 182817 628 + . . scaffold309 GLEAN mRNA 30808 30848 0.840268 + . ID=CGI_10007935; scaffold309 TRF Tandem_Repeat 30808 30848 82 + . . scaffold309 GLEAN mRNA 36067 36105 0.840268 + . ID=CGI_10007935; scaffold309 TRF Tandem_Repeat 36067 36105 69 + . . scaffold309 GLEAN mRNA 38758 38792 0.840268 + . ID=CGI_10007935; scaffold309 TRF Tandem_Repeat 38758 38792 52 + . . scaffold309 GLEAN mRNA 178525 178770 0.835602 - . ID=CGI_10007938; scaffold309 WUBlastX LINE_L2 178525 178770 45 - . . scaffold309 GLEAN mRNA 182982 183015 0.999353 + . ID=CGI_10007939; scaffold309 TRF Tandem_Repeat 182982 183015 50 + . . scaffold309 GLEAN mRNA 184855 184915 0.999353 + . ID=CGI_10007939; scaffold309 TRF Tandem_Repeat 184855 184915 106 + . . scaffold309 GLEAN mRNA 186473 186523 0.999353 + . ID=CGI_10007939; scaffold309 TRF Tandem_Repeat 186473 186523 84 + . . scaffold1033 GLEAN mRNA 24913 24943 0.99964 + . ID=CGI_10007943; scaffold1033 TRF Tandem_Repeat 24913 24943 62 + . . scaffold1033 GLEAN mRNA 41954 42036 0.999223 + . ID=CGI_10007944; scaffold1033 TRF Tandem_Repeat 41954 42036 62 + . . scaffold1033 GLEAN mRNA 49443 49485 0.999223 + . ID=CGI_10007944; scaffold1033 TRF Tandem_Repeat 49443 49485 58 + . . scaffold1033 GLEAN mRNA 49444 49498 0.999223 + . ID=CGI_10007944; scaffold1033 TRF Tandem_Repeat 49444 49498 55 + . . scaffold1033 GLEAN mRNA 49984 50030 0.999223 + . ID=CGI_10007944; scaffold1033 TRF Tandem_Repeat 49984 50030 94 + . . scaffold1033 GLEAN mRNA 136508 136563 0.945243 + . ID=CGI_10007949; scaffold1033 TRF Tandem_Repeat 136508 136563 112 + . . scaffold1033 GLEAN mRNA 139463 139501 0.945243 + . ID=CGI_10007949; scaffold1033 TRF Tandem_Repeat 139463 139501 78 + . . scaffold1033 GLEAN mRNA 140130 140182 0.945243 + . ID=CGI_10007949; scaffold1033 TRF Tandem_Repeat 140130 140182 106 + . . scaffold1879 GLEAN mRNA 23808 23854 0.327022 + . ID=CGI_10007952; scaffold1879 TRF Tandem_Repeat 23808 23854 51 + . . scaffold1879 GLEAN mRNA 18987 19676 0.327022 + . ID=CGI_10007952; scaffold1879 WUBlastX LTR_Gypsy 18987 19676 81 + . . scaffold1879 GLEAN mRNA 38310 38422 0.804824 - . ID=CGI_10007953; scaffold1879 TRF Tandem_Repeat 38310 38422 81 + . . scaffold1879 GLEAN mRNA 38348 38470 0.804824 - . ID=CGI_10007953; scaffold1879 TRF Tandem_Repeat 38348 38470 131 + . . scaffold1879 GLEAN mRNA 79467 79522 1 + . ID=CGI_10007954; scaffold1879 TRF Tandem_Repeat 79467 79522 105 + . . scaffold1879 GLEAN mRNA 105217 105248 0.803871 - . ID=CGI_10007957; scaffold1879 TRF Tandem_Repeat 105217 105248 57 + . . scaffold1879 GLEAN mRNA 120064 120471 1 - . ID=CGI_10007960; scaffold1879 WUBlastX LINE_CR1-L2 120064 120471 147 - . . scaffold1879 GLEAN mRNA 120512 122272 1 - . ID=CGI_10007960; scaffold1879 WUBlastX LINE_CR1 120512 122272 357 - . . scaffold1879 GLEAN mRNA 120136 120504 1 - . ID=CGI_10007960; scaffold1879 WUBlastX LINE_CR1-L2 120136 120504 183 - . . scaffold1879 GLEAN mRNA 120506 121999 1 - . ID=CGI_10007960; scaffold1879 WUBlastX LINE_CR1-L2 120506 121999 737 - . . scaffold1879 GLEAN mRNA 179078 179219 0.766349 + . ID=CGI_10007962; scaffold1879 TRF Tandem_Repeat 179078 179219 146 + . . scaffold1879 GLEAN mRNA 183276 183321 0.766349 + . ID=CGI_10007962; scaffold1879 TRF Tandem_Repeat 183276 183321 92 + . . scaffold1879 GLEAN mRNA 185157 185194 0.766349 + . ID=CGI_10007962; scaffold1879 TRF Tandem_Repeat 185157 185194 67 + . . scaffold1209 GLEAN mRNA 18907 18960 0.961312 - . ID=CGI_10007964; scaffold1209 TRF Tandem_Repeat 18907 18960 73 + . . scaffold1209 GLEAN mRNA 18910 18959 0.961312 - . ID=CGI_10007964; scaffold1209 TRF Tandem_Repeat 18910 18959 57 + . . scaffold1209 GLEAN mRNA 20840 21403 0.961312 - . ID=CGI_10007964; scaffold1209 WUBlastX LINE_L1 20840 21403 65 - . . scaffold1209 GLEAN mRNA 20640 20810 0.961312 - . ID=CGI_10007964; scaffold1209 WUBlastX LINE_L1 20640 20810 99 - . . scaffold1209 GLEAN mRNA 26308 27849 0.961312 - . ID=CGI_10007964; scaffold1209 WUBlastX LINE_L1-Tx1 26308 27849 369 - . . scaffold1209 GLEAN mRNA 20229 20642 0.961312 - . ID=CGI_10007964; scaffold1209 WUBlastX LINE_RTE-X 20229 20642 45 - . . scaffold1209 GLEAN mRNA 20117 20191 0.961312 - . ID=CGI_10007964; scaffold1209 WUBlastX LINE_RTE-X 20117 20191 27 - . . scaffold1209 GLEAN mRNA 20265 20609 0.961312 - . ID=CGI_10007964; scaffold1209 WUBlastX LINE_RTE-X 20265 20609 99 - . . scaffold1209 GLEAN mRNA 20810 21298 0.961312 - . ID=CGI_10007964; scaffold1209 WUBlastX LINE_L2 20810 21298 122 - . . scaffold1209 GLEAN mRNA 101578 101712 0.999661 - . ID=CGI_10007965; scaffold1209 WUBlastX LTR_Pao 101578 101712 20 - . . scaffold1209 GLEAN mRNA 112071 112589 0.38603 - . ID=CGI_10007967; scaffold1209 WUBlastX DNA_En-Spm 112071 112589 250 + . . scaffold1209 GLEAN mRNA 118920 119602 0.38603 - . ID=CGI_10007967; scaffold1209 TRF Tandem_Repeat 118920 119602 969 + . . scaffold1209 GLEAN mRNA 121094 121453 0.38603 - . ID=CGI_10007967; scaffold1209 WUBlastX DNA_MuDR 121094 121453 58 - . . scaffold1209 GLEAN mRNA 121133 121561 0.38603 - . ID=CGI_10007967; scaffold1209 WUBlastX DNA_MuDR 121133 121561 45 - . . scaffold1209 GLEAN mRNA 121891 122082 0.38603 - . ID=CGI_10007967; scaffold1209 WUBlastX DNA_MuDR 121891 122082 52 - . . scaffold1209 GLEAN mRNA 117200 118390 0.38603 - . ID=CGI_10007967; scaffold1209 WUBlastX LTR_Gypsy 117200 118390 461 - . . scaffold1159 GLEAN mRNA 97267 97621 1 + . ID=CGI_10007975; scaffold1159 TRF Tandem_Repeat 97267 97621 379 + . . scaffold1159 GLEAN mRNA 100465 100888 1 + . ID=CGI_10007975; scaffold1159 TRF Tandem_Repeat 100465 100888 453 + . . scaffold1159 GLEAN mRNA 100515 100888 1 + . ID=CGI_10007975; scaffold1159 TRF Tandem_Repeat 100515 100888 565 + . . scaffold1159 GLEAN mRNA 109423 111683 0.999351 - . ID=CGI_10007976; scaffold1159 TRF Tandem_Repeat 109423 111683 2651 + . . scaffold1159 GLEAN mRNA 109423 111683 0.999351 - . ID=CGI_10007976; scaffold1159 TRF Tandem_Repeat 109423 111683 2973 + . . scaffold1159 GLEAN mRNA 109423 111683 0.999351 - . ID=CGI_10007976; scaffold1159 TRF Tandem_Repeat 109423 111683 2991 + . . scaffold1159 GLEAN mRNA 112998 113937 0.999351 - . ID=CGI_10007976; scaffold1159 TRF Tandem_Repeat 112998 113937 1137 + . . scaffold1159 GLEAN mRNA 112997 113937 0.999351 - . ID=CGI_10007976; scaffold1159 TRF Tandem_Repeat 112997 113937 1248 + . . scaffold1159 GLEAN mRNA 118395 118942 0.999351 - . ID=CGI_10007976; scaffold1159 TRF Tandem_Repeat 118395 118942 690 + . . scaffold1159 GLEAN mRNA 122927 123249 0.999351 - . ID=CGI_10007976; scaffold1159 TRF Tandem_Repeat 122927 123249 290 + . . scaffold1159 GLEAN mRNA 124065 124977 0.999351 - . ID=CGI_10007976; scaffold1159 TRF Tandem_Repeat 124065 124977 512 + . . scaffold1159 GLEAN mRNA 125181 126173 0.999351 - . ID=CGI_10007976; scaffold1159 TRF Tandem_Repeat 125181 126173 1415 + . . scaffold1159 GLEAN mRNA 126240 126717 0.999351 - . ID=CGI_10007976; scaffold1159 TRF Tandem_Repeat 126240 126717 282 + . . scaffold1159 GLEAN mRNA 150528 151759 0.966335 + . ID=CGI_10007977; scaffold1159 TRF Tandem_Repeat 150528 151759 1764 + . . scaffold1159 GLEAN mRNA 155813 156008 0.966335 + . ID=CGI_10007977; scaffold1159 TRF Tandem_Repeat 155813 156008 338 + . . scaffold1159 GLEAN mRNA 159431 159460 0.966335 + . ID=CGI_10007977; scaffold1159 TRF Tandem_Repeat 159431 159460 60 + . . scaffold1159 GLEAN mRNA 160374 160580 0.966335 + . ID=CGI_10007977; scaffold1159 WUBlastX LINE_CR1 160374 160580 33 + . . scaffold1159 GLEAN mRNA 161360 161767 0.966335 + . ID=CGI_10007977; scaffold1159 WUBlastX LINE_L2 161360 161767 82 + . . scaffold1159 GLEAN mRNA 160407 160583 0.966335 + . ID=CGI_10007977; scaffold1159 WUBlastX LINE_L2 160407 160583 60 + . . scaffold1159 GLEAN mRNA 160410 160634 0.966335 + . ID=CGI_10007977; scaffold1159 WUBlastX LINE_L2 160410 160634 35 + . . scaffold1159 GLEAN mRNA 161555 161818 0.966335 + . ID=CGI_10007977; scaffold1159 WUBlastX LINE_L2 161555 161818 91 + . . scaffold1159 GLEAN mRNA 161555 161920 0.966335 + . ID=CGI_10007977; scaffold1159 WUBlastX LINE_L2 161555 161920 54 + . . scaffold1159 GLEAN mRNA 160930 161028 0.966335 + . ID=CGI_10007977; scaffold1159 WUBlastX LINE_L2 160930 161028 24 + . . scaffold446 GLEAN mRNA 67771 67813 0.936933 + . ID=CGI_10007979; scaffold446 TRF Tandem_Repeat 67771 67813 86 + . . scaffold446 GLEAN mRNA 79159 79372 0.936933 + . ID=CGI_10007979; scaffold446 TRF Tandem_Repeat 79159 79372 392 + . . scaffold446 GLEAN mRNA 83821 83853 0.936933 + . ID=CGI_10007979; scaffold446 TRF Tandem_Repeat 83821 83853 57 + . . scaffold446 GLEAN mRNA 85797 85837 0.936933 + . ID=CGI_10007979; scaffold446 TRF Tandem_Repeat 85797 85837 73 + . . scaffold446 GLEAN mRNA 104819 104857 0.936933 + . ID=CGI_10007979; scaffold446 TRF Tandem_Repeat 104819 104857 60 + . . scaffold446 GLEAN mRNA 122858 122912 0.936933 + . ID=CGI_10007979; scaffold446 TRF Tandem_Repeat 122858 122912 65 + . . scaffold446 GLEAN mRNA 122858 122903 0.936933 + . ID=CGI_10007979; scaffold446 TRF Tandem_Repeat 122858 122903 65 + . . scaffold446 GLEAN mRNA 126389 127708 0.936933 + . ID=CGI_10007979; scaffold446 TRF Tandem_Repeat 126389 127708 1261 + . . scaffold1868 GLEAN mRNA 4297 4328 0.883452 + . ID=CGI_10007980; scaffold1868 TRF Tandem_Repeat 4297 4328 64 + . . scaffold1868 GLEAN mRNA 4805 4837 0.883452 + . ID=CGI_10007980; scaffold1868 TRF Tandem_Repeat 4805 4837 66 + . . scaffold1868 GLEAN mRNA 11216 11241 0.883452 + . ID=CGI_10007980; scaffold1868 TRF Tandem_Repeat 11216 11241 52 + . . scaffold1868 GLEAN mRNA 37404 37550 0.326951 + . ID=CGI_10007981; scaffold1868 TRF Tandem_Repeat 37404 37550 114 + . . scaffold1868 GLEAN mRNA 40736 40767 0.326951 + . ID=CGI_10007981; scaffold1868 TRF Tandem_Repeat 40736 40767 64 + . . scaffold1868 GLEAN mRNA 44882 44920 0.326951 + . ID=CGI_10007981; scaffold1868 TRF Tandem_Repeat 44882 44920 78 + . . scaffold1868 GLEAN mRNA 144493 144900 0.993839 - . ID=CGI_10007983; scaffold1868 WUBlastX LINE_RTE-X 144493 144900 53 - . . scaffold1868 GLEAN mRNA 151403 152032 1 + . ID=CGI_10007984; scaffold1868 WUBlastX LTR_DIRS 151403 152032 132 + . . scaffold1868 GLEAN mRNA 173056 173179 0.984982 - . ID=CGI_10007985; scaffold1868 TRF Tandem_Repeat 173056 173179 214 + . . scaffold1868 GLEAN mRNA 173441 173499 0.984982 - . ID=CGI_10007985; scaffold1868 TRF Tandem_Repeat 173441 173499 118 + . . scaffold1868 GLEAN mRNA 169431 169607 0.984982 - . ID=CGI_10007985; scaffold1868 WUBlastX LINE_RTE-X 169431 169607 25 + . . scaffold1868 GLEAN mRNA 168900 169007 0.984982 - . ID=CGI_10007985; scaffold1868 WUBlastX LINE_RTE-X 168900 169007 44 + . . scaffold1868 GLEAN mRNA 169015 169434 0.984982 - . ID=CGI_10007985; scaffold1868 WUBlastX LINE_RTE-X 169015 169434 38 + . . scaffold1868 GLEAN mRNA 168873 168995 0.984982 - . ID=CGI_10007985; scaffold1868 WUBlastX LINE_RTE-X 168873 168995 42 + . . scaffold42866 GLEAN mRNA 5097 5465 0.99967 + . ID=CGI_10007989; scaffold42866 WUBlastX LTR_Pao 5097 5465 314 - . . scaffold42866 GLEAN mRNA 5100 5678 0.99967 + . ID=CGI_10007989; scaffold42866 WUBlastX LTR_Pao 5100 5678 286 - . . scaffold42866 GLEAN mRNA 5031 5417 0.99967 + . ID=CGI_10007989; scaffold42866 WUBlastX LTR_Pao 5031 5417 64 - . . scaffold42866 GLEAN mRNA 20210 20241 0.99967 + . ID=CGI_10007989; scaffold42866 TRF Tandem_Repeat 20210 20241 64 + . . scaffold42866 GLEAN mRNA 34492 34521 0.999502 + . ID=CGI_10007990; scaffold42866 TRF Tandem_Repeat 34492 34521 53 + . . scaffold42866 GLEAN mRNA 39883 39929 0.999502 + . ID=CGI_10007990; scaffold42866 TRF Tandem_Repeat 39883 39929 51 + . . scaffold42866 GLEAN mRNA 73095 73158 0.871395 + . ID=CGI_10007991; scaffold42866 TRF Tandem_Repeat 73095 73158 128 + . . scaffold42866 GLEAN mRNA 71251 72201 0.871395 + . ID=CGI_10007991; scaffold42866 WUBlastX DNA_IS4EU 71251 72201 102 - . . scaffold42866 GLEAN mRNA 71332 71997 0.871395 + . ID=CGI_10007991; scaffold42866 WUBlastX DNA_IS4EU 71332 71997 105 - . . scaffold42866 GLEAN mRNA 71251 71763 0.871395 + . ID=CGI_10007991; scaffold42866 WUBlastX DNA_IS4EU 71251 71763 113 - . . scaffold42866 GLEAN mRNA 124480 124532 0.945167 + . ID=CGI_10007992; scaffold42866 TRF Tandem_Repeat 124480 124532 106 + . . scaffold42866 GLEAN mRNA 130219 130310 0.945167 + . ID=CGI_10007992; scaffold42866 TRF Tandem_Repeat 130219 130310 78 + . . scaffold42866 GLEAN mRNA 130612 130705 0.945167 + . ID=CGI_10007992; scaffold42866 TRF Tandem_Repeat 130612 130705 125 + . . scaffold42866 GLEAN mRNA 132061 132718 0.945167 + . ID=CGI_10007992; scaffold42866 TRF Tandem_Repeat 132061 132718 775 + . . scaffold42866 GLEAN mRNA 145790 145843 0.999026 + . ID=CGI_10007993; scaffold42866 TRF Tandem_Repeat 145790 145843 99 + . . scaffold42866 GLEAN mRNA 149030 149139 0.999026 + . ID=CGI_10007993; scaffold42866 TRF Tandem_Repeat 149030 149139 122 + . . scaffold42880 GLEAN mRNA 29340 29522 0.999999 - . ID=CGI_10007997; scaffold42880 WUBlastX LTR_Ngaro 29340 29783 219 - . . scaffold42880 GLEAN mRNA 29244 29522 0.999999 - . ID=CGI_10007997; scaffold42880 WUBlastX LTR_Ngaro 29244 29876 61 - . . scaffold42880 GLEAN mRNA 29364 29522 0.999999 - . ID=CGI_10007997; scaffold42880 WUBlastX LTR_Ngaro 29364 30206 97 - . . scaffold42880 GLEAN mRNA 191584 191653 1 - . ID=CGI_10007998; scaffold42880 TRF Tandem_Repeat 191584 191653 50 + . . scaffold42880 GLEAN mRNA 191551 192166 1 - . ID=CGI_10007998; scaffold42880 TRF Tandem_Repeat 191551 192166 894 + . . scaffold42880 GLEAN mRNA 185430 185675 1 - . ID=CGI_10007998; scaffold42880 WUBlastX LINE_RTE-BovB 185430 185675 99 + . . scaffold42880 GLEAN mRNA 185992 188925 1 - . ID=CGI_10007998; scaffold42880 WUBlastX LINE_L1 185992 188925 1100 + . . scaffold42880 GLEAN mRNA 186826 188925 1 - . ID=CGI_10007998; scaffold42880 WUBlastX LINE_L1-Tx1 186826 188925 1176 + . . scaffold42892 GLEAN mRNA 94411 94542 0.997921 + . ID=CGI_10008004; scaffold42892 TRF Tandem_Repeat 94411 94542 51 + . . scaffold42892 GLEAN mRNA 94396 94554 0.997921 + . ID=CGI_10008004; scaffold42892 TRF Tandem_Repeat 94396 94554 63 + . . scaffold42892 GLEAN mRNA 94496 94550 0.997921 + . ID=CGI_10008004; scaffold42892 TRF Tandem_Repeat 94496 94550 58 + . . scaffold42892 GLEAN mRNA 176556 176611 0.654238 - . ID=CGI_10008009; scaffold42892 TRF Tandem_Repeat 176556 176611 112 + . . scaffold42894 GLEAN mRNA 16771 17498 1 + . ID=CGI_10008012; scaffold42894 TRF Tandem_Repeat 16771 17498 581 + . . scaffold42894 GLEAN mRNA 16784 17331 1 + . ID=CGI_10008012; scaffold42894 TRF Tandem_Repeat 16784 17331 503 + . . scaffold42894 GLEAN mRNA 86742 86794 0.999676 + . ID=CGI_10008020; scaffold42894 TRF Tandem_Repeat 86742 86794 70 + . . scaffold42894 GLEAN mRNA 113054 113130 0.933917 + . ID=CGI_10008021; scaffold42894 TRF Tandem_Repeat 113054 113130 127 + . . scaffold1277 GLEAN mRNA 82675 82872 0.765999 - . ID=CGI_10008022; scaffold1277 WUBlastX LINE_RTE-X 82675 82872 75 + . . scaffold1277 GLEAN mRNA 82953 83873 0.765999 - . ID=CGI_10008022; scaffold1277 WUBlastX LINE_RTE-X 82953 83873 277 + . . scaffold1277 GLEAN mRNA 82723 82893 0.765999 - . ID=CGI_10008022; scaffold1277 WUBlastX LINE_RTE-X 82723 82893 78 + . . scaffold1277 GLEAN mRNA 82874 83008 0.765999 - . ID=CGI_10008022; scaffold1277 WUBlastX LINE_RTE-X 82874 83008 59 + . . scaffold1277 GLEAN mRNA 157629 157661 0.999825 + . ID=CGI_10008023; scaffold1277 TRF Tandem_Repeat 157629 157661 66 + . . scaffold1277 GLEAN mRNA 161661 161790 0.999825 + . ID=CGI_10008023; scaffold1277 TRF Tandem_Repeat 161661 161790 95 + . . scaffold1277 GLEAN mRNA 161776 162017 0.999825 + . ID=CGI_10008023; scaffold1277 TRF Tandem_Repeat 161776 162017 161 + . . scaffold1277 GLEAN mRNA 161836 162017 0.999825 + . ID=CGI_10008023; scaffold1277 TRF Tandem_Repeat 161836 162017 166 + . . scaffold1277 GLEAN mRNA 163470 163657 0.999825 + . ID=CGI_10008023; scaffold1277 TRF Tandem_Repeat 163470 163657 257 + . . scaffold1277 GLEAN mRNA 163516 163657 0.999825 + . ID=CGI_10008023; scaffold1277 TRF Tandem_Repeat 163516 163657 112 + . . scaffold1277 GLEAN mRNA 163525 163583 0.999825 + . ID=CGI_10008023; scaffold1277 TRF Tandem_Repeat 163525 163583 64 + . . scaffold1277 GLEAN mRNA 169842 169901 0.999825 + . ID=CGI_10008023; scaffold1277 TRF Tandem_Repeat 169842 169901 120 + . . scaffold1277 GLEAN mRNA 170318 170373 0.999825 + . ID=CGI_10008023; scaffold1277 TRF Tandem_Repeat 170318 170373 94 + . . scaffold1277 GLEAN mRNA 186010 186351 1 + . ID=CGI_10008024; scaffold1277 TRF Tandem_Repeat 186010 186351 316 + . . scaffold1277 GLEAN mRNA 186027 186352 1 + . ID=CGI_10008024; scaffold1277 TRF Tandem_Repeat 186027 186352 372 + . . scaffold1277 GLEAN mRNA 191892 192899 1 + . ID=CGI_10008024; scaffold1277 WUBlastX LTR_Gypsy 191892 192899 366 - . . scaffold1277 GLEAN mRNA 192015 193082 1 + . ID=CGI_10008024; scaffold1277 WUBlastX LTR_Gypsy 192015 193082 228 - . . scaffold1277 GLEAN mRNA 192063 192755 1 + . ID=CGI_10008024; scaffold1277 WUBlastX LTR_Gypsy 192063 192755 433 - . . scaffold1808 GLEAN mRNA 13996 14074 0.999995 + . ID=CGI_10008026; scaffold1808 TRF Tandem_Repeat 13996 14074 151 + . . scaffold1808 GLEAN mRNA 17522 17586 0.999995 + . ID=CGI_10008026; scaffold1808 TRF Tandem_Repeat 17522 17586 130 + . . scaffold1808 GLEAN mRNA 78245 78282 0.947424 - . ID=CGI_10008029; scaffold1808 TRF Tandem_Repeat 78245 78282 51 + . . scaffold1808 GLEAN mRNA 120548 120594 0.574175 + . ID=CGI_10008030; scaffold1808 TRF Tandem_Repeat 120548 120594 85 + . . scaffold1808 GLEAN mRNA 114813 115403 0.574175 + . ID=CGI_10008030; scaffold1808 WUBlastX LINE_CR1-L2 114813 115403 24 + . . scaffold1808 GLEAN mRNA 131304 131363 0.574175 + . ID=CGI_10008030; scaffold1808 TRF Tandem_Repeat 131304 131363 111 + . . scaffold1808 GLEAN mRNA 131367 131478 0.574175 + . ID=CGI_10008030; scaffold1808 TRF Tandem_Repeat 131367 131478 89 + . . scaffold1808 GLEAN mRNA 131385 131478 0.574175 + . ID=CGI_10008030; scaffold1808 TRF Tandem_Repeat 131385 131478 107 + . . scaffold1808 GLEAN mRNA 136802 137083 1 + . ID=CGI_10008031; scaffold1808 WUBlastX DNA_Kolobok-IS4 136802 137083 71 + . . scaffold1808 GLEAN mRNA 162275 162360 1 + . ID=CGI_10008033; scaffold1808 TRF Tandem_Repeat 162275 162360 172 + . . scaffold42890 GLEAN mRNA 7232 7277 0.987092 - . ID=CGI_10008034; scaffold42890 TRF Tandem_Repeat 7232 7277 92 + . . scaffold42890 GLEAN mRNA 40751 40803 0.660882 + . ID=CGI_10008038; scaffold42890 TRF Tandem_Repeat 40751 40803 97 + . . scaffold42890 GLEAN mRNA 41000 41532 0.660882 + . ID=CGI_10008038; scaffold42890 TRF Tandem_Repeat 41000 41532 868 + . . scaffold42890 GLEAN mRNA 46865 46912 0.660882 + . ID=CGI_10008038; scaffold42890 TRF Tandem_Repeat 46865 46912 87 + . . scaffold42890 GLEAN mRNA 77126 77731 0.99612 + . ID=CGI_10008039; scaffold42890 TRF Tandem_Repeat 77126 77731 184 + . . scaffold42890 GLEAN mRNA 77138 77413 0.99612 + . ID=CGI_10008039; scaffold42890 TRF Tandem_Repeat 77138 77413 254 + . . scaffold42890 GLEAN mRNA 80297 81070 0.99612 + . ID=CGI_10008039; scaffold42890 WUBlastX LTR_Gypsy 80297 81070 402 - . . scaffold42890 GLEAN mRNA 90010 90111 0.99612 + . ID=CGI_10008039; scaffold42890 TRF Tandem_Repeat 90010 90111 77 + . . scaffold42890 GLEAN mRNA 90483 90666 0.99612 + . ID=CGI_10008039; scaffold42890 TRF Tandem_Repeat 90483 90666 117 + . . scaffold42890 GLEAN mRNA 82380 82724 0.99612 + . ID=CGI_10008039; scaffold42890 WUBlastX LTR_Gypsy 82380 82724 354 - . . scaffold42890 GLEAN mRNA 86014 86139 0.99612 + . ID=CGI_10008039; scaffold42890 WUBlastX LINE_RTE-X 86014 86139 45 + . . scaffold42890 GLEAN mRNA 82709 84166 0.99612 + . ID=CGI_10008039; scaffold42890 WUBlastX LTR_Gypsy 82709 84166 606 - . . scaffold42890 GLEAN mRNA 86432 86557 0.99612 + . ID=CGI_10008039; scaffold42890 WUBlastX LINE_RTE-X 86432 86557 47 + . . scaffold42890 GLEAN mRNA 81943 82377 0.99612 + . ID=CGI_10008039; scaffold42890 WUBlastX LTR_Gypsy 81943 82377 367 - . . scaffold42890 GLEAN mRNA 85984 86151 0.99612 + . ID=CGI_10008039; scaffold42890 WUBlastX LINE_RTE-X 85984 86151 38 + . . scaffold42890 GLEAN mRNA 85531 85602 0.99612 + . ID=CGI_10008039; scaffold42890 WUBlastX LINE_RTE-X 85531 85602 33 + . . scaffold42890 GLEAN mRNA 80453 81937 0.99612 + . ID=CGI_10008039; scaffold42890 WUBlastX LTR_Gypsy 80453 81937 534 - . . scaffold42890 GLEAN mRNA 90010 90111 0.716263 - . ID=CGI_10008040; scaffold42890 TRF Tandem_Repeat 90010 90111 77 + . . scaffold42890 GLEAN mRNA 90483 90666 0.716263 - . ID=CGI_10008040; scaffold42890 TRF Tandem_Repeat 90483 90666 117 + . . scaffold42890 GLEAN mRNA 82665 82724 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LTR_Gypsy 82380 82724 354 - . . scaffold42890 GLEAN mRNA 86014 86139 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LINE_RTE-X 86014 86139 45 + . . scaffold42890 GLEAN mRNA 82709 84166 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LTR_Gypsy 82709 84166 606 - . . scaffold42890 GLEAN mRNA 86432 86557 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LINE_RTE-X 86432 86557 47 + . . scaffold42890 GLEAN mRNA 85984 86151 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LINE_RTE-X 85984 86151 38 + . . scaffold42890 GLEAN mRNA 85531 85602 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LINE_RTE-X 85531 85602 33 + . . scaffold42890 GLEAN mRNA 104177 104290 1 + . ID=CGI_10008041; scaffold42890 TRF Tandem_Repeat 104177 104290 210 + . . scaffold42890 GLEAN mRNA 110183 110459 0.999676 - . ID=CGI_10008042; scaffold42890 TRF Tandem_Repeat 110183 110459 527 + . . scaffold42890 GLEAN mRNA 110851 111054 0.999676 - . ID=CGI_10008042; scaffold42890 TRF Tandem_Repeat 110851 111054 354 + . . scaffold42890 GLEAN mRNA 111589 111761 0.999676 - . ID=CGI_10008042; scaffold42890 TRF Tandem_Repeat 111589 111761 140 + . . scaffold42890 GLEAN mRNA 117281 118029 0.999676 - . ID=CGI_10008042; scaffold42890 TRF Tandem_Repeat 117281 118029 683 + . . scaffold42890 GLEAN mRNA 119438 119733 0.999676 - . ID=CGI_10008042; scaffold42890 TRF Tandem_Repeat 119438 119733 432 + . . scaffold42890 GLEAN mRNA 119661 119733 0.999676 - . ID=CGI_10008042; scaffold42890 TRF Tandem_Repeat 119661 119733 59 + . . scaffold42890 GLEAN mRNA 121701 122267 0.999676 - . ID=CGI_10008042; scaffold42890 TRF Tandem_Repeat 121701 122267 440 + . . scaffold42890 GLEAN mRNA 121726 121897 0.999676 - . ID=CGI_10008042; scaffold42890 TRF Tandem_Repeat 121726 121897 206 + . . scaffold42890 GLEAN mRNA 121701 121999 0.999676 - . ID=CGI_10008042; scaffold42890 TRF Tandem_Repeat 121701 121999 179 + . . scaffold42890 GLEAN mRNA 140657 141390 0.999999 - . ID=CGI_10008044; scaffold42890 TRF Tandem_Repeat 140657 141390 985 + . . scaffold42890 GLEAN mRNA 142266 142864 0.999999 - . ID=CGI_10008044; scaffold42890 TRF Tandem_Repeat 142266 142864 966 + . . scaffold42890 GLEAN mRNA 184025 185131 0.438528 - . ID=CGI_10008045; scaffold42890 WUBlastX DNA_Sola 184025 185131 339 - . . scaffold42890 GLEAN mRNA 183876 184016 0.438528 - . ID=CGI_10008045; scaffold42890 WUBlastX DNA_Sola 183876 184016 26 - . . scaffold42890 GLEAN mRNA 196453 196599 0.438528 - . ID=CGI_10008045; scaffold42890 WUBlastX LINE_L1 196453 196599 79 + . . scaffold42890 GLEAN mRNA 182355 182765 0.438528 - . ID=CGI_10008045; scaffold42890 WUBlastX DNA_hAT-hATw 182355 182765 41 - . . scaffold42890 GLEAN mRNA 183992 185536 0.438528 - . ID=CGI_10008045; scaffold42890 WUBlastX DNA_Sola 183992 185536 274 - . . scaffold42890 GLEAN mRNA 197032 197091 0.438528 - . ID=CGI_10008045; scaffold42890 WUBlastX LINE_L1-Tx1 197032 197091 61 + . . scaffold42890 GLEAN mRNA 196577 197038 0.438528 - . ID=CGI_10008045; scaffold42890 WUBlastX LINE_L1-Tx1 196577 197038 171 + . . scaffold42890 GLEAN mRNA 196493 197026 0.438528 - . ID=CGI_10008045; scaffold42890 WUBlastX LINE_L1 196493 197026 125 + . . scaffold1632 GLEAN mRNA 171154 171188 0.999947 - . ID=CGI_10008053; scaffold1632 TRF Tandem_Repeat 171154 171188 70 + . . scaffold1632 GLEAN mRNA 178419 178462 0.999947 - . ID=CGI_10008053; scaffold1632 TRF Tandem_Repeat 178419 178462 72 + . . scaffold1632 GLEAN mRNA 181555 181888 0.999947 - . ID=CGI_10008053; scaffold1632 TRF Tandem_Repeat 181555 181888 515 + . . scaffold1632 GLEAN mRNA 193219 193268 0.999947 - . ID=CGI_10008053; scaffold1632 TRF Tandem_Repeat 193219 193268 55 + . . scaffold1632 GLEAN mRNA 193219 193272 0.999947 - . ID=CGI_10008053; scaffold1632 TRF Tandem_Repeat 193219 193272 60 + . . scaffold1348 GLEAN mRNA 44244 44288 0.986255 + . ID=CGI_10008064; scaffold1348 TRF Tandem_Repeat 44244 44288 90 + . . scaffold1348 GLEAN mRNA 45931 45977 0.986255 + . ID=CGI_10008064; scaffold1348 TRF Tandem_Repeat 45931 45977 94 + . . scaffold1348 GLEAN mRNA 169486 169572 0.994745 + . ID=CGI_10008093; scaffold1348 TRF Tandem_Repeat 169486 169572 104 + . . scaffold1348 GLEAN mRNA 186927 187455 0.990558 + . ID=CGI_10008094; scaffold1348 TRF Tandem_Repeat 186927 187455 470 + . . scaffold1348 GLEAN mRNA 186943 187458 0.990558 + . ID=CGI_10008094; scaffold1348 TRF Tandem_Repeat 186943 187458 543 + . . scaffold42904 GLEAN mRNA 31502 31618 0.999919 + . ID=CGI_10008097; scaffold42904 TRF Tandem_Repeat 31502 31618 128 + . . scaffold42904 GLEAN mRNA 31501 31700 0.999919 + . ID=CGI_10008097; scaffold42904 TRF Tandem_Repeat 31501 31700 104 + . . scaffold42904 GLEAN mRNA 31701 31872 0.999919 + . ID=CGI_10008097; scaffold42904 TRF Tandem_Repeat 31701 31872 164 + . . scaffold42904 GLEAN mRNA 43592 43687 0.830856 + . ID=CGI_10008098; scaffold42904 WUBlastX LTR_DIRS? 43592 43687 35 + . . scaffold42904 GLEAN mRNA 43690 43869 0.830856 + . ID=CGI_10008098; scaffold42904 WUBlastX LTR_DIRS 43690 43869 88 + . . scaffold42904 GLEAN mRNA 43881 44162 0.830856 + . ID=CGI_10008098; scaffold42904 WUBlastX LTR_DIRS 43881 44162 177 + . . scaffold42904 GLEAN mRNA 50263 50375 0.650923 - . ID=CGI_10008099; scaffold42904 TRF Tandem_Repeat 50263 50375 65 + . . scaffold42904 GLEAN mRNA 74423 74450 0.945642 - . ID=CGI_10008100; scaffold42904 TRF Tandem_Repeat 74423 74450 56 + . . scaffold42904 GLEAN mRNA 94472 95047 0.944676 - . ID=CGI_10008103; scaffold42904 WUBlastX LTR_Copia 94472 95047 32 - . . scaffold42904 GLEAN mRNA 101959 102522 0.944676 - . ID=CGI_10008103; scaffold42904 WUBlastX DNA_Kolobok 101959 102522 77 + . . scaffold42904 GLEAN mRNA 103409 103585 0.944676 - . ID=CGI_10008103; scaffold42904 WUBlastX LINE_RTE-X 103409 103585 33 + . . scaffold42904 GLEAN mRNA 103388 103537 0.944676 - . ID=CGI_10008103; scaffold42904 WUBlastX LINE_RTE-X 103388 103537 35 + . . scaffold42904 GLEAN mRNA 157392 157444 0.999338 + . ID=CGI_10008106; scaffold42904 TRF Tandem_Repeat 157392 157444 52 + . . scaffold42904 GLEAN mRNA 162254 163243 0.999338 + . ID=CGI_10008106; scaffold42904 TRF Tandem_Repeat 162254 163243 848 + . . scaffold42904 GLEAN mRNA 166686 167347 0.999338 + . ID=CGI_10008106; scaffold42904 TRF Tandem_Repeat 166686 167347 946 + . . scaffold42904 GLEAN mRNA 193971 194020 0.996819 + . ID=CGI_10008107; scaffold42904 TRF Tandem_Repeat 193971 194020 100 + . . scaffold694 GLEAN mRNA 23753 23805 0.741618 + . ID=CGI_10008108; scaffold694 TRF Tandem_Repeat 23753 23805 74 + . . scaffold694 GLEAN mRNA 35106 35151 0.741618 + . ID=CGI_10008108; scaffold694 TRF Tandem_Repeat 35106 35151 92 + . . scaffold694 GLEAN mRNA 40061 40110 0.741618 + . ID=CGI_10008108; scaffold694 TRF Tandem_Repeat 40061 40110 100 + . . scaffold694 GLEAN mRNA 42323 42370 0.741618 + . ID=CGI_10008108; scaffold694 TRF Tandem_Repeat 42323 42370 96 + . . scaffold694 GLEAN mRNA 52080 52148 0.741618 + . ID=CGI_10008108; scaffold694 TRF Tandem_Repeat 52080 52148 129 + . . scaffold694 GLEAN mRNA 130740 130787 0.544847 + . ID=CGI_10008109; scaffold694 TRF Tandem_Repeat 130740 130787 96 + . . scaffold694 GLEAN mRNA 131743 132578 0.544847 + . ID=CGI_10008109; scaffold694 TRF Tandem_Repeat 131743 132578 1090 + . . scaffold694 GLEAN mRNA 150682 150706 0.806778 + . ID=CGI_10008110; scaffold694 TRF Tandem_Repeat 150682 150706 50 + . . scaffold694 GLEAN mRNA 150839 150954 0.806778 + . ID=CGI_10008110; scaffold694 TRF Tandem_Repeat 150839 150954 117 + . . scaffold42930 GLEAN mRNA 27906 27985 0.791418 - . ID=CGI_10008123; scaffold42930 TRF Tandem_Repeat 27906 27985 151 + . . scaffold42930 GLEAN mRNA 30041 30074 0.791418 - . ID=CGI_10008123; scaffold42930 TRF Tandem_Repeat 30041 30074 68 + . . scaffold42930 GLEAN mRNA 31133 31189 0.791418 - . ID=CGI_10008123; scaffold42930 TRF Tandem_Repeat 31133 31189 107 + . . scaffold42930 GLEAN mRNA 31133 31183 0.791418 - . ID=CGI_10008123; scaffold42930 TRF Tandem_Repeat 31133 31183 66 + . . scaffold42930 GLEAN mRNA 36305 36580 0.791418 - . ID=CGI_10008123; scaffold42930 TRF Tandem_Repeat 36305 36580 516 + . . scaffold42930 GLEAN mRNA 36558 36671 0.791418 - . ID=CGI_10008123; scaffold42930 TRF Tandem_Repeat 36558 36671 228 + . . scaffold42930 GLEAN mRNA 42590 43275 0.791418 - . ID=CGI_10008123; scaffold42930 TRF Tandem_Repeat 42590 43275 958 + . . scaffold42930 GLEAN mRNA 43642 43830 0.791418 - . ID=CGI_10008123; scaffold42930 TRF Tandem_Repeat 43642 43830 117 + . . scaffold42930 GLEAN mRNA 98062 98101 0.999676 + . ID=CGI_10008125; scaffold42930 TRF Tandem_Repeat 98062 98101 80 + . . scaffold42930 GLEAN mRNA 98101 98142 0.999676 + . ID=CGI_10008125; scaffold42930 TRF Tandem_Repeat 98101 98142 84 + . . scaffold923 GLEAN mRNA 51965 52303 0.776207 - . ID=CGI_10008128; scaffold923 TRF Tandem_Repeat 51965 52303 360 + . . scaffold923 GLEAN mRNA 53734 53858 0.776207 - . ID=CGI_10008128; scaffold923 TRF Tandem_Repeat 53734 53858 74 + . . scaffold923 GLEAN mRNA 54634 54691 0.776207 - . ID=CGI_10008128; scaffold923 TRF Tandem_Repeat 54634 54691 89 + . . scaffold923 GLEAN mRNA 57659 57711 0.776207 - . ID=CGI_10008128; scaffold923 TRF Tandem_Repeat 57659 57711 79 + . . scaffold923 GLEAN mRNA 172274 172338 0.695008 - . ID=CGI_10008130; scaffold923 TRF Tandem_Repeat 172274 172338 130 + . . scaffold42896 GLEAN mRNA 164867 164913 0.527325 - . ID=CGI_10008138; scaffold42896 TRF Tandem_Repeat 164867 164913 94 + . . scaffold42896 GLEAN mRNA 168438 168475 0.527325 - . ID=CGI_10008138; scaffold42896 TRF Tandem_Repeat 168438 168475 76 + . . scaffold1647 GLEAN mRNA 159665 159695 0.957006 - . ID=CGI_10008141; scaffold1647 TRF Tandem_Repeat 159665 159695 53 + . . scaffold1647 GLEAN mRNA 161021 161056 0.957006 - . ID=CGI_10008141; scaffold1647 TRF Tandem_Repeat 161021 161056 54 + . . scaffold1647 GLEAN mRNA 161332 161817 0.957006 - . ID=CGI_10008141; scaffold1647 WUBlastX DNA_En-Spm 161332 161817 134 + . . scaffold1647 GLEAN mRNA 159261 159440 0.957006 - . ID=CGI_10008141; scaffold1647 WUBlastX DNA_En-Spm 159261 159440 132 + . . scaffold1647 GLEAN mRNA 159439 159855 0.957006 - . ID=CGI_10008141; scaffold1647 WUBlastX DNA_En-Spm 159439 159855 204 + . . scaffold1647 GLEAN mRNA 190593 190713 0.525082 + . ID=CGI_10008148; scaffold1647 TRF Tandem_Repeat 190593 190713 172 + . . scaffold1647 GLEAN mRNA 188357 188800 0.525082 + . ID=CGI_10008148; scaffold1647 WUBlastX LINE_Penelope 188357 188800 22 - . . scaffold1647 GLEAN mRNA 198300 198336 0.525082 + . ID=CGI_10008148; scaffold1647 TRF Tandem_Repeat 198300 198336 74 + . . scaffold1647 GLEAN mRNA 199044 199100 0.525082 + . ID=CGI_10008148; scaffold1647 TRF Tandem_Repeat 199044 199100 105 + . . scaffold1647 GLEAN mRNA 199143 199276 0.525082 + . ID=CGI_10008148; scaffold1647 TRF Tandem_Repeat 199143 199276 119 + . . scaffold42922 GLEAN mRNA 17979 18029 0.730139 + . ID=CGI_10008150; scaffold42922 TRF Tandem_Repeat 17979 18029 102 + . . scaffold42922 GLEAN mRNA 34593 34918 0.593188 - . ID=CGI_10008151; scaffold42922 TRF Tandem_Repeat 34593 34918 459 + . . scaffold42922 GLEAN mRNA 49022 49110 0.999676 - . ID=CGI_10008153; scaffold42922 TRF Tandem_Repeat 49022 49110 79 + . . scaffold42922 GLEAN mRNA 48959 49107 0.999676 - . ID=CGI_10008153; scaffold42922 TRF Tandem_Repeat 48959 49107 235 + . . scaffold42922 GLEAN mRNA 52215 52252 0.999676 - . ID=CGI_10008153; scaffold42922 TRF Tandem_Repeat 52215 52252 76 + . . scaffold42922 GLEAN mRNA 53520 53587 0.999676 - . ID=CGI_10008153; scaffold42922 TRF Tandem_Repeat 53520 53587 59 + . . scaffold42922 GLEAN mRNA 52215 52252 0.971785 + . ID=CGI_10008154; scaffold42922 TRF Tandem_Repeat 52215 52252 76 + . . scaffold42922 GLEAN mRNA 53520 53587 0.971785 + . ID=CGI_10008154; scaffold42922 TRF Tandem_Repeat 53520 53587 59 + . . scaffold42922 GLEAN mRNA 125306 125569 0.999243 - . ID=CGI_10008155; scaffold42922 TRF Tandem_Repeat 125306 125569 258 + . . scaffold42922 GLEAN mRNA 126118 126302 0.999243 - . ID=CGI_10008155; scaffold42922 TRF Tandem_Repeat 126118 126302 352 + . . scaffold42922 GLEAN mRNA 126330 126478 0.999243 - . ID=CGI_10008155; scaffold42922 TRF Tandem_Repeat 126330 126478 271 + . . scaffold42922 GLEAN mRNA 165215 165329 0.770846 - . ID=CGI_10008158; scaffold42922 TRF Tandem_Repeat 165215 165329 105 + . . scaffold42922 GLEAN mRNA 166040 166435 0.770846 - . ID=CGI_10008158; scaffold42922 TRF Tandem_Repeat 166040 166435 294 + . . scaffold1578 GLEAN mRNA 62452 62522 0.998909 - . ID=CGI_10008160; scaffold1578 TRF Tandem_Repeat 62452 62522 117 + . . scaffold1578 GLEAN mRNA 65362 65520 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 65362 65520 23 + . . scaffold1578 GLEAN mRNA 63793 64236 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LINE_L1-Tx1 63793 64236 91 - . . scaffold1578 GLEAN mRNA 56008 56547 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Ngaro 56008 56547 183 - . . scaffold1578 GLEAN mRNA 66072 66479 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 66072 66479 328 + . . scaffold1578 GLEAN mRNA 67321 67578 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 67321 67578 220 + . . scaffold1578 GLEAN mRNA 66502 66636 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 66502 66636 56 + . . scaffold1578 GLEAN mRNA 68314 68400 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 68314 68400 25 + . . scaffold1578 GLEAN mRNA 66571 66681 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 66571 66681 21 + . . scaffold1578 GLEAN mRNA 66479 66550 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 66479 66550 47 + . . scaffold1578 GLEAN mRNA 65811 65909 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 65811 65909 34 + . . scaffold1578 GLEAN mRNA 66976 67035 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 66976 67035 26 + . . scaffold1578 GLEAN mRNA 65862 66473 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 65862 66473 116 + . . scaffold1578 GLEAN mRNA 66526 66654 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 66526 66654 74 + . . scaffold1578 GLEAN mRNA 67258 67575 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 67258 67575 114 + . . scaffold1578 GLEAN mRNA 65439 65573 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Pao 65439 65573 21 + . . scaffold1578 GLEAN mRNA 73651 73729 0.711447 + . ID=CGI_10008161; scaffold1578 TRF Tandem_Repeat 73651 73729 158 + . . scaffold1578 GLEAN mRNA 107358 107519 0.618108 + . ID=CGI_10008163; scaffold1578 WUBlastX LINE_L2 107271 107519 78 + . . scaffold1578 GLEAN mRNA 168355 168387 0.677651 - . ID=CGI_10008165; scaffold1578 TRF Tandem_Repeat 168355 168387 66 + . . scaffold42946 GLEAN mRNA 20912 21494 0.638186 + . ID=CGI_10008169; scaffold42946 TRF Tandem_Repeat 20912 21494 402 + . . scaffold42946 GLEAN mRNA 33612 33646 0.459933 + . ID=CGI_10008170; scaffold42946 TRF Tandem_Repeat 33612 33646 61 + . . scaffold42946 GLEAN mRNA 35659 35988 0.459933 + . ID=CGI_10008170; scaffold42946 WUBlastX LINE_L1-Tx1 35659 35988 124 - . . scaffold42946 GLEAN mRNA 35404 36003 0.459933 + . ID=CGI_10008170; scaffold42946 WUBlastX LINE_L1 35404 36003 51 - . . scaffold42946 GLEAN mRNA 35515 35988 0.459933 + . ID=CGI_10008170; scaffold42946 WUBlastX LINE_L1 35515 35988 98 - . . scaffold42946 GLEAN mRNA 53859 53894 0.459933 + . ID=CGI_10008170; scaffold42946 TRF Tandem_Repeat 53859 53894 63 + . . scaffold42946 GLEAN mRNA 116950 117000 1 + . ID=CGI_10008177; scaffold42946 TRF Tandem_Repeat 116950 117000 102 + . . scaffold42946 GLEAN mRNA 119358 119472 1 + . ID=CGI_10008177; scaffold42946 TRF Tandem_Repeat 119358 119472 83 + . . scaffold42946 GLEAN mRNA 192339 192417 0.388265 - . ID=CGI_10008183; scaffold42946 TRF Tandem_Repeat 192339 192417 81 + . . scaffold42946 GLEAN mRNA 192346 192417 0.388265 - . ID=CGI_10008183; scaffold42946 TRF Tandem_Repeat 192346 192417 75 + . . scaffold42924 GLEAN mRNA 28318 28361 0.999998 - . ID=CGI_10008184; scaffold42924 TRF Tandem_Repeat 28318 28361 52 + . . scaffold42924 GLEAN mRNA 29973 30034 0.999998 - . ID=CGI_10008184; scaffold42924 TRF Tandem_Repeat 29973 30034 63 + . . scaffold42924 GLEAN mRNA 37348 37384 0.434676 - . ID=CGI_10008185; scaffold42924 TRF Tandem_Repeat 37348 37384 74 + . . scaffold42924 GLEAN mRNA 39629 40861 0.434676 - . ID=CGI_10008185; scaffold42924 WUBlastX LINE_L1-Tx1 39629 40861 647 - . . scaffold42924 GLEAN mRNA 53122 53157 0.434676 - . ID=CGI_10008185; scaffold42924 TRF Tandem_Repeat 53122 53157 56 + . . scaffold42924 GLEAN mRNA 64464 64533 0.434676 - . ID=CGI_10008185; scaffold42924 TRF Tandem_Repeat 64464 64533 140 + . . scaffold42924 GLEAN mRNA 102633 103548 0.999676 - . ID=CGI_10008189; scaffold42924 TRF Tandem_Repeat 102633 103548 1153 + . . scaffold42924 GLEAN mRNA 105301 105370 0.999676 - . ID=CGI_10008189; scaffold42924 TRF Tandem_Repeat 105301 105370 88 + . . scaffold42924 GLEAN mRNA 163567 163607 0.999229 - . ID=CGI_10008191; scaffold42924 TRF Tandem_Repeat 163567 163607 73 + . . scaffold42924 GLEAN mRNA 169965 170013 0.999229 - . ID=CGI_10008191; scaffold42924 TRF Tandem_Repeat 169965 170013 89 + . . scaffold42924 GLEAN mRNA 170563 170619 0.999229 - . ID=CGI_10008191; scaffold42924 TRF Tandem_Repeat 170563 170619 53 + . . scaffold42924 GLEAN mRNA 171030 171062 0.999229 - . ID=CGI_10008191; scaffold42924 TRF Tandem_Repeat 171030 171062 66 + . . scaffold814 GLEAN mRNA 30326 30431 0.46577 + . ID=CGI_10008192; scaffold814 TRF Tandem_Repeat 30326 30431 158 + . . scaffold814 GLEAN mRNA 86488 87855 0.997298 + . ID=CGI_10008194; scaffold814 WUBlastX LTR_Ngaro 86488 87855 949 - . . scaffold814 GLEAN mRNA 86503 88095 0.997298 + . ID=CGI_10008194; scaffold814 WUBlastX LTR_Ngaro 86503 88095 813 - . . scaffold814 GLEAN mRNA 85526 86416 0.997298 + . ID=CGI_10008194; scaffold814 WUBlastX LTR_Ngaro 85526 86416 290 - . . scaffold814 GLEAN mRNA 86461 86604 0.997298 + . ID=CGI_10008194; scaffold814 WUBlastX LTR_Gypsy 86461 86604 27 - . . scaffold814 GLEAN mRNA 112744 112857 0.86536 + . ID=CGI_10008197; scaffold814 TRF Tandem_Repeat 112744 112857 180 + . . scaffold814 GLEAN mRNA 118135 118176 0.579076 - . ID=CGI_10008198; scaffold814 TRF Tandem_Repeat 118135 118176 66 + . . scaffold814 GLEAN mRNA 118122 118173 0.579076 - . ID=CGI_10008198; scaffold814 TRF Tandem_Repeat 118122 118173 77 + . . scaffold814 GLEAN mRNA 118122 118176 0.579076 - . ID=CGI_10008198; scaffold814 TRF Tandem_Repeat 118122 118176 83 + . . scaffold814 GLEAN mRNA 120737 120839 0.579076 - . ID=CGI_10008198; scaffold814 TRF Tandem_Repeat 120737 120839 91 + . . scaffold814 GLEAN mRNA 126235 126260 1 - . ID=CGI_10008199; scaffold814 WUBlastX LINE_CR1 126180 126260 22 - . . scaffold814 GLEAN mRNA 135984 136043 0.91229 - . ID=CGI_10008201; scaffold814 TRF Tandem_Repeat 135984 136043 120 + . . scaffold814 GLEAN mRNA 150508 150543 0.91229 - . ID=CGI_10008201; scaffold814 TRF Tandem_Repeat 150508 150543 72 + . . scaffold814 GLEAN mRNA 151885 151985 0.91229 - . ID=CGI_10008201; scaffold814 TRF Tandem_Repeat 151885 151985 60 + . . scaffold814 GLEAN mRNA 151453 152044 0.91229 - . ID=CGI_10008201; scaffold814 TRF Tandem_Repeat 151453 152044 963 + . . scaffold814 GLEAN mRNA 153119 153333 0.91229 - . ID=CGI_10008201; scaffold814 TRF Tandem_Repeat 153119 153333 178 + . . scaffold814 GLEAN mRNA 171211 171268 0.91229 - . ID=CGI_10008201; scaffold814 TRF Tandem_Repeat 171211 171268 107 + . . scaffold1880 GLEAN mRNA 42796 42841 0.383639 - . ID=CGI_10008204; scaffold1880 TRF Tandem_Repeat 42796 42841 92 + . . scaffold1880 GLEAN mRNA 51497 51853 0.383639 - . ID=CGI_10008204; scaffold1880 WUBlastX LINE_L2 51497 51853 52 + . . scaffold1880 GLEAN mRNA 51551 54814 0.383639 - . ID=CGI_10008204; scaffold1880 WUBlastX LINE_RTE-X 51551 54814 926 + . . scaffold1880 GLEAN mRNA 52502 54811 0.383639 - . ID=CGI_10008204; scaffold1880 WUBlastX LINE_RTE-X 52502 54811 1112 + . . scaffold1880 GLEAN mRNA 69764 69817 0.383639 - . ID=CGI_10008204; scaffold1880 TRF Tandem_Repeat 69764 69817 108 + . . scaffold1880 GLEAN mRNA 110509 110562 0.994137 - . ID=CGI_10008206; scaffold1880 TRF Tandem_Repeat 110509 110562 108 + . . scaffold1880 GLEAN mRNA 113798 113858 0.994137 - . ID=CGI_10008206; scaffold1880 TRF Tandem_Repeat 113798 113858 122 + . . scaffold1880 GLEAN mRNA 128659 128698 0.811393 - . ID=CGI_10008207; scaffold1880 TRF Tandem_Repeat 128659 128698 53 + . . scaffold1880 GLEAN mRNA 130606 130640 0.811393 - . ID=CGI_10008207; scaffold1880 TRF Tandem_Repeat 130606 130640 70 + . . scaffold1880 GLEAN mRNA 151783 151811 1 - . ID=CGI_10008210; scaffold1880 TRF Tandem_Repeat 151783 151811 58 + . . scaffold1880 GLEAN mRNA 174939 175067 1 - . ID=CGI_10008213; scaffold1880 TRF Tandem_Repeat 174939 175067 132 + . . scaffold1880 GLEAN mRNA 178245 178287 1 - . ID=CGI_10008213; scaffold1880 TRF Tandem_Repeat 178245 178287 86 + . . scaffold1880 GLEAN mRNA 180402 181815 1 - . ID=CGI_10008213; scaffold1880 TRF Tandem_Repeat 180402 181815 2006 + . . scaffold1880 GLEAN mRNA 191335 191913 1 - . ID=CGI_10008214; scaffold1880 WUBlastX LTR_Pao 191335 191913 196 + . . scaffold1880 GLEAN mRNA 191440 191916 1 - . ID=CGI_10008214; scaffold1880 WUBlastX LTR_Pao 191440 191916 364 + . . scaffold1880 GLEAN mRNA 200053 200083 0.999988 + . ID=CGI_10008216; scaffold1880 TRF Tandem_Repeat 200053 200083 62 + . . scaffold42948 GLEAN mRNA 3120 3179 1 - . ID=CGI_10008217; scaffold42948 TRF Tandem_Repeat 3120 3179 84 + . . scaffold42948 GLEAN mRNA 14184 14242 0.999989 + . ID=CGI_10008219; scaffold42948 TRF Tandem_Repeat 14184 14242 118 + . . scaffold42948 GLEAN mRNA 26805 26841 0.913626 + . ID=CGI_10008222; scaffold42948 TRF Tandem_Repeat 26805 26841 74 + . . scaffold42948 GLEAN mRNA 28676 28713 0.913626 + . ID=CGI_10008222; scaffold42948 TRF Tandem_Repeat 28676 28713 51 + . . scaffold42948 GLEAN mRNA 31421 31459 0.913626 + . ID=CGI_10008222; scaffold42948 TRF Tandem_Repeat 31421 31459 78 + . . scaffold42948 GLEAN mRNA 33362 33394 0.913626 + . ID=CGI_10008222; scaffold42948 TRF Tandem_Repeat 33362 33394 66 + . . scaffold42948 GLEAN mRNA 33638 33690 0.913626 + . ID=CGI_10008222; scaffold42948 TRF Tandem_Repeat 33638 33690 106 + . . scaffold42948 GLEAN mRNA 34952 35001 0.913626 + . ID=CGI_10008222; scaffold42948 TRF Tandem_Repeat 34952 35001 91 + . . scaffold42948 GLEAN mRNA 35872 37212 0.913626 + . ID=CGI_10008222; scaffold42948 WUBlastX DNA_hAT 35872 37212 387 + . . scaffold42948 GLEAN mRNA 173266 173363 0.999923 + . ID=CGI_10008235; scaffold42948 TRF Tandem_Repeat 173266 173363 196 + . . scaffold42948 GLEAN mRNA 195557 195640 0.150089 + . ID=CGI_10008236; scaffold42948 WUBlastX DNA_TcMar-Marin 195557 195640 48 + . . scaffold42948 GLEAN mRNA 195377 195592 0.150089 + . ID=CGI_10008236; scaffold42948 WUBlastX DNA_TcMar-Marin 195377 195592 51 + . . scaffold42948 GLEAN mRNA 195581 195661 0.150089 + . ID=CGI_10008236; scaffold42948 WUBlastX DNA_TcMar-Marin 195581 195661 27 + . . scaffold42960 GLEAN mRNA 54749 54831 0.989491 - . ID=CGI_10008239; scaffold42960 TRF Tandem_Repeat 54749 54831 125 + . . scaffold42960 GLEAN mRNA 65662 65809 0.99959 + . ID=CGI_10008240; scaffold42960 TRF Tandem_Repeat 65662 65809 156 + . . scaffold42960 GLEAN mRNA 148047 148075 1 - . ID=CGI_10008242; scaffold42960 TRF Tandem_Repeat 148047 148075 58 + . . scaffold42960 GLEAN mRNA 155430 155496 0.651111 - . ID=CGI_10008243; scaffold42960 TRF Tandem_Repeat 155430 155496 134 + . . scaffold42960 GLEAN mRNA 155430 155496 0.451172 + . ID=CGI_10008244; scaffold42960 TRF Tandem_Repeat 155430 155496 134 + . . scaffold42960 GLEAN mRNA 171547 171624 1 - . ID=CGI_10008245; scaffold42960 TRF Tandem_Repeat 171547 171624 138 + . . scaffold42960 GLEAN mRNA 178464 178500 1 - . ID=CGI_10008245; scaffold42960 TRF Tandem_Repeat 178464 178500 74 + . . scaffold1148 GLEAN mRNA 70513 70885 0.920529 - . ID=CGI_10008246; scaffold1148 TRF Tandem_Repeat 70513 70885 369 + . . scaffold1148 GLEAN mRNA 75958 76466 0.920529 - . ID=CGI_10008246; scaffold1148 TRF Tandem_Repeat 75958 76466 295 + . . scaffold1148 GLEAN mRNA 75958 76466 0.920529 - . ID=CGI_10008246; scaffold1148 TRF Tandem_Repeat 75958 76466 262 + . . scaffold1148 GLEAN mRNA 75951 76486 0.920529 - . ID=CGI_10008246; scaffold1148 TRF Tandem_Repeat 75951 76486 481 + . . scaffold1148 GLEAN mRNA 75978 76486 0.920529 - . ID=CGI_10008246; scaffold1148 TRF Tandem_Repeat 75978 76486 517 + . . scaffold1148 GLEAN mRNA 78010 78034 0.920529 - . ID=CGI_10008246; scaffold1148 TRF Tandem_Repeat 78010 78034 50 + . . scaffold1148 GLEAN mRNA 79896 79932 0.920529 - . ID=CGI_10008246; scaffold1148 TRF Tandem_Repeat 79896 79932 74 + . . scaffold1148 GLEAN mRNA 65530 65555 0.920529 - . ID=CGI_10008246; scaffold1148 TRF Tandem_Repeat 65530 65555 52 + . . scaffold1148 GLEAN mRNA 134594 134660 0.989295 + . ID=CGI_10008248; scaffold1148 TRF Tandem_Repeat 134594 134660 134 + . . scaffold1148 GLEAN mRNA 136784 136821 0.989295 + . ID=CGI_10008248; scaffold1148 TRF Tandem_Repeat 136784 136821 58 + . . scaffold1148 GLEAN mRNA 161604 161711 0.858513 + . ID=CGI_10008249; scaffold1148 WUBlastX DNA_TcMar-Tc1 161604 161711 35 - . . scaffold1148 GLEAN mRNA 160710 161027 0.858513 + . ID=CGI_10008249; scaffold1148 WUBlastX DNA_TcMar-Tc1 160710 161027 76 - . . scaffold1148 GLEAN mRNA 161051 161644 0.858513 + . ID=CGI_10008249; scaffold1148 WUBlastX DNA_TcMar-Tc1 161051 161644 218 - . . scaffold1749 GLEAN mRNA 93935 94162 0.876214 - . ID=CGI_10008254; scaffold1749 WUBlastX LTR_DIRS 93935 94162 124 - . . scaffold1749 GLEAN mRNA 94233 94463 0.876214 - . ID=CGI_10008254; scaffold1749 WUBlastX LTR_DIRS 94233 94463 76 - . . scaffold1749 GLEAN mRNA 93875 94213 0.876214 - . ID=CGI_10008254; scaffold1749 WUBlastX LTR_DIRS 93875 94213 115 - . . scaffold1749 GLEAN mRNA 93800 94207 0.876214 - . ID=CGI_10008254; scaffold1749 WUBlastX LTR_DIRS 93800 94207 109 - . . scaffold1749 GLEAN mRNA 94233 94514 0.876214 - . ID=CGI_10008254; scaffold1749 WUBlastX LTR_DIRS 94233 94514 31 - . . scaffold1749 GLEAN mRNA 109577 109813 0.57225 + . ID=CGI_10008256; scaffold1749 WUBlastX DNA_Maverick 109577 109813 130 + . . scaffold1749 GLEAN mRNA 108579 108878 0.57225 + . ID=CGI_10008256; scaffold1749 WUBlastX DNA_Maverick 108579 108878 197 + . . scaffold1749 GLEAN mRNA 108963 109409 0.57225 + . ID=CGI_10008256; scaffold1749 WUBlastX DNA_Maverick 108963 109409 334 + . . scaffold1749 GLEAN mRNA 106725 106877 0.57225 + . ID=CGI_10008256; scaffold1749 WUBlastX DNA_Maverick 106725 106877 88 - . . scaffold1749 GLEAN mRNA 109465 109620 0.57225 + . ID=CGI_10008256; scaffold1749 WUBlastX DNA_Maverick 109465 109620 66 + . . scaffold1749 GLEAN mRNA 106322 106669 0.57225 + . ID=CGI_10008256; scaffold1749 WUBlastX DNA_Maverick 106322 106669 208 - . . scaffold1749 GLEAN mRNA 109495 109620 0.57225 + . ID=CGI_10008256; scaffold1749 WUBlastX DNA_Maverick 109495 109620 68 + . . scaffold1749 GLEAN mRNA 114626 114915 0.57225 + . ID=CGI_10008256; scaffold1749 TRF Tandem_Repeat 114626 114915 492 + . . scaffold1749 GLEAN mRNA 164160 164213 0.429059 + . ID=CGI_10008259; scaffold1749 TRF Tandem_Repeat 164160 164213 90 + . . scaffold1749 GLEAN mRNA 173784 174224 0.428785 + . ID=CGI_10008260; scaffold1749 WUBlastX LINE_RTE-X 173784 174224 65 - . . scaffold1749 GLEAN mRNA 173871 174233 0.428785 + . ID=CGI_10008260; scaffold1749 WUBlastX LINE_RTE-X 173871 174233 79 - . . scaffold1749 GLEAN mRNA 174445 174771 0.428785 + . ID=CGI_10008260; scaffold1749 WUBlastX LINE_RTE-X 174445 174771 52 - . . scaffold1749 GLEAN mRNA 173910 174092 0.428785 + . ID=CGI_10008260; scaffold1749 WUBlastX LINE_RTE-X 173910 174092 81 - . . scaffold1749 GLEAN mRNA 174232 174705 0.428785 + . ID=CGI_10008260; scaffold1749 WUBlastX LINE_RTE-X 174232 174705 205 - . . scaffold1749 GLEAN mRNA 173919 174215 0.428785 + . ID=CGI_10008260; scaffold1749 WUBlastX LINE_RTE-X 173919 174215 81 - . . scaffold1749 GLEAN mRNA 188669 189363 0.702743 + . ID=CGI_10008262; scaffold1749 TRF Tandem_Repeat 188669 189363 839 + . . scaffold1749 GLEAN mRNA 196652 196707 0.702743 + . ID=CGI_10008262; scaffold1749 TRF Tandem_Repeat 196652 196707 103 + . . scaffold1841 GLEAN mRNA 20074 20148 0.701023 - . ID=CGI_10008265; scaffold1841 TRF Tandem_Repeat 20074 20148 141 + . . scaffold1841 GLEAN mRNA 87073 87127 0.932026 - . ID=CGI_10008271; scaffold1841 TRF Tandem_Repeat 87073 87127 74 + . . scaffold1841 GLEAN mRNA 106478 106569 0.525288 - . ID=CGI_10008273; scaffold1841 TRF Tandem_Repeat 106478 106569 175 + . . scaffold1841 GLEAN mRNA 108623 108666 0.525288 - . ID=CGI_10008273; scaffold1841 TRF Tandem_Repeat 108623 108666 72 + . . scaffold1841 GLEAN mRNA 104019 104447 0.525288 - . ID=CGI_10008273; scaffold1841 WUBlastX LTR_Pao 104019 104447 34 - . . scaffold1841 GLEAN mRNA 157870 157929 0.99815 + . ID=CGI_10008277; scaffold1841 TRF Tandem_Repeat 157870 157929 111 + . . scaffold574 GLEAN mRNA 109012 109037 0.728739 + . ID=CGI_10008283; scaffold574 TRF Tandem_Repeat 109012 109037 52 + . . scaffold574 GLEAN mRNA 111654 111678 0.728739 + . ID=CGI_10008283; scaffold574 TRF Tandem_Repeat 111654 111678 50 + . . scaffold665 GLEAN mRNA 13847 13936 0.19964 - . ID=CGI_10008287; scaffold665 TRF Tandem_Repeat 13847 13936 72 + . . scaffold665 GLEAN mRNA 71860 72066 0.997991 - . ID=CGI_10008293; scaffold665 TRF Tandem_Repeat 71860 72066 301 + . . scaffold665 GLEAN mRNA 72494 72529 0.997991 - . ID=CGI_10008293; scaffold665 TRF Tandem_Repeat 72494 72529 63 + . . scaffold665 GLEAN mRNA 84813 85417 0.997991 - . ID=CGI_10008293; scaffold665 TRF Tandem_Repeat 84813 85417 755 + . . scaffold665 GLEAN mRNA 132964 133176 1 + . ID=CGI_10008297; scaffold665 TRF Tandem_Repeat 132964 133176 408 + . . scaffold665 GLEAN mRNA 133693 133837 1 + . ID=CGI_10008297; scaffold665 TRF Tandem_Repeat 133693 133837 128 + . . scaffold665 GLEAN mRNA 133797 133975 1 + . ID=CGI_10008297; scaffold665 TRF Tandem_Repeat 133797 133975 139 + . . scaffold665 GLEAN mRNA 141413 141630 0.835163 + . ID=CGI_10008298; scaffold665 TRF Tandem_Repeat 141413 141630 373 + . . scaffold665 GLEAN mRNA 144131 144834 0.835163 + . ID=CGI_10008298; scaffold665 TRF Tandem_Repeat 144131 144834 768 + . . scaffold665 GLEAN mRNA 144952 144985 0.835163 + . ID=CGI_10008298; scaffold665 TRF Tandem_Repeat 144952 144985 50 + . . scaffold665 GLEAN mRNA 145245 146427 0.835163 + . ID=CGI_10008298; scaffold665 TRF Tandem_Repeat 145245 146427 807 + . . scaffold665 GLEAN mRNA 145245 146416 0.835163 + . ID=CGI_10008298; scaffold665 TRF Tandem_Repeat 145245 146416 1275 + . . scaffold665 GLEAN mRNA 189088 189168 0.990769 + . ID=CGI_10008302; scaffold665 TRF Tandem_Repeat 189088 189168 162 + . . scaffold665 GLEAN mRNA 197449 197550 0.999855 + . ID=CGI_10008303; scaffold665 TRF Tandem_Repeat 197449 197550 168 + . . scaffold1272 GLEAN mRNA 23662 23701 0.551444 - . ID=CGI_10008304; scaffold1272 TRF Tandem_Repeat 23662 23701 53 + . . scaffold1272 GLEAN mRNA 31988 32032 0.889748 + . ID=CGI_10008305; scaffold1272 TRF Tandem_Repeat 31988 32032 54 + . . scaffold1272 GLEAN mRNA 71736 71788 0.861711 + . ID=CGI_10008307; scaffold1272 TRF Tandem_Repeat 71736 71788 106 + . . scaffold1272 GLEAN mRNA 73393 73467 0.861711 + . ID=CGI_10008307; scaffold1272 TRF Tandem_Repeat 73393 73467 105 + . . scaffold1272 GLEAN mRNA 73393 73464 0.861711 + . ID=CGI_10008307; scaffold1272 TRF Tandem_Repeat 73393 73464 117 + . . scaffold1272 GLEAN mRNA 74008 74284 0.861711 + . ID=CGI_10008307; scaffold1272 TRF Tandem_Repeat 74008 74284 455 + . . scaffold1272 GLEAN mRNA 76450 77046 0.861711 + . ID=CGI_10008307; scaffold1272 TRF Tandem_Repeat 76450 77046 685 + . . scaffold1272 GLEAN mRNA 80684 80727 0.861711 + . ID=CGI_10008307; scaffold1272 TRF Tandem_Repeat 80684 80727 88 + . . scaffold1272 GLEAN mRNA 91091 91145 0.861711 + . ID=CGI_10008307; scaffold1272 TRF Tandem_Repeat 91091 91145 53 + . . scaffold1272 GLEAN mRNA 94606 94648 0.861711 + . ID=CGI_10008307; scaffold1272 TRF Tandem_Repeat 94606 94648 86 + . . scaffold1272 GLEAN mRNA 90154 90681 0.861711 + . ID=CGI_10008307; scaffold1272 WUBlastX LINE_Penelope 90154 90681 61 + . . scaffold1272 GLEAN mRNA 161385 162092 0.324986 - . ID=CGI_10008310; scaffold1272 WUBlastX DNA_Harbinger 161385 162092 373 - . . scaffold1272 GLEAN mRNA 167145 168152 0.324986 - . ID=CGI_10008310; scaffold1272 WUBlastX LTR_Ngaro 167145 168152 468 - . . scaffold1272 GLEAN mRNA 166458 166871 0.324986 - . ID=CGI_10008310; scaffold1272 WUBlastX LTR_Ngaro 166458 166871 27 - . . scaffold1272 GLEAN mRNA 166458 166682 0.324986 - . ID=CGI_10008310; scaffold1272 WUBlastX LTR_Ngaro 166458 166682 50 - . . scaffold1272 GLEAN mRNA 167091 168374 0.324986 - . ID=CGI_10008310; scaffold1272 WUBlastX LTR_Ngaro 167091 168374 353 - . . scaffold1272 GLEAN mRNA 192715 192762 0.324986 - . ID=CGI_10008310; scaffold1272 TRF Tandem_Repeat 192715 192762 96 + . . scaffold1272 GLEAN mRNA 192763 192793 0.324986 - . ID=CGI_10008310; scaffold1272 TRF Tandem_Repeat 192763 192793 62 + . . scaffold1272 GLEAN mRNA 181120 181392 0.324986 - . ID=CGI_10008310; scaffold1272 WUBlastX LTR_Ngaro 181120 181392 81 - . . scaffold42994 GLEAN mRNA 5441 5569 0.836758 + . ID=CGI_10008312; scaffold42994 WUBlastX LINE_RTE-BovB 5336 5569 64 + . . scaffold42994 GLEAN mRNA 5441 5566 0.836758 + . ID=CGI_10008312; scaffold42994 WUBlastX LINE_RTE-BovB 5249 5566 44 + . . scaffold42994 GLEAN mRNA 5441 5572 0.836758 + . ID=CGI_10008312; scaffold42994 WUBlastX LINE_RTE-BovB 5405 5572 69 + . . scaffold42994 GLEAN mRNA 20435 21175 0.999999 + . ID=CGI_10008314; scaffold42994 WUBlastX DNA_hAT 20435 21175 157 + . . scaffold42994 GLEAN mRNA 46803 46828 1 - . ID=CGI_10008315; scaffold42994 TRF Tandem_Repeat 46803 46828 52 + . . scaffold42994 GLEAN mRNA 69570 69619 0.648556 - . ID=CGI_10008316; scaffold42994 TRF Tandem_Repeat 69570 69619 91 + . . scaffold42994 GLEAN mRNA 86764 86942 1 - . ID=CGI_10008318; scaffold42994 TRF Tandem_Repeat 86764 86942 225 + . . scaffold42994 GLEAN mRNA 95870 96369 1 + . ID=CGI_10008319; scaffold42994 TRF Tandem_Repeat 95870 96369 334 + . . scaffold42994 GLEAN mRNA 101597 101665 1 + . ID=CGI_10008319; scaffold42994 TRF Tandem_Repeat 101597 101665 75 + . . scaffold42994 GLEAN mRNA 101597 101665 1 + . ID=CGI_10008319; scaffold42994 TRF Tandem_Repeat 101597 101665 75 + . . scaffold42994 GLEAN mRNA 101597 101665 1 + . ID=CGI_10008319; scaffold42994 TRF Tandem_Repeat 101597 101665 75 + . . scaffold42994 GLEAN mRNA 112871 112926 1 + . ID=CGI_10008321; scaffold42994 TRF Tandem_Repeat 112871 112926 53 + . . scaffold221 GLEAN mRNA 80067 80156 0.999137 - . ID=CGI_10008344; scaffold221 WUBlastX DNA_Harbinger 80067 80156 26 - . . scaffold221 GLEAN mRNA 80246 80425 0.999137 - . ID=CGI_10008344; scaffold221 WUBlastX DNA_Harbinger 80246 80638 140 - . . scaffold221 GLEAN mRNA 79166 79528 0.999137 - . ID=CGI_10008344; scaffold221 WUBlastX DNA_Harbinger 78728 79528 281 - . . scaffold221 GLEAN mRNA 82988 83215 0.999661 + . ID=CGI_10008345; scaffold221 WUBlastX LTR_Gypsy 82757 83215 66 + . . scaffold221 GLEAN mRNA 82988 83629 0.999661 + . ID=CGI_10008345; scaffold221 WUBlastX LTR_Copia 82832 83680 39 + . . scaffold221 GLEAN mRNA 82988 83374 0.999661 + . ID=CGI_10008345; scaffold221 WUBlastX LTR_Gypsy 82832 83374 63 + . . scaffold1440 GLEAN mRNA 39282 40409 1 - . ID=CGI_10008353; scaffold1440 WUBlastX LTR_Pao 39282 40409 506 + . . scaffold1440 GLEAN mRNA 39483 40415 1 - . ID=CGI_10008353; scaffold1440 WUBlastX LTR_Pao 39483 40415 877 + . . scaffold1440 GLEAN mRNA 48557 49144 0.667435 - . ID=CGI_10008354; scaffold1440 WUBlastX DNA_Maverick 48557 49144 175 - . . scaffold1440 GLEAN mRNA 48557 49042 0.667435 - . ID=CGI_10008354; scaffold1440 WUBlastX DNA_Maverick 48557 49042 218 - . . scaffold1440 GLEAN mRNA 56275 57236 0.667435 - . ID=CGI_10008354; scaffold1440 TRF Tandem_Repeat 56275 57236 1286 + . . scaffold1440 GLEAN mRNA 57984 58439 0.667435 - . ID=CGI_10008354; scaffold1440 TRF Tandem_Repeat 57984 58439 556 + . . scaffold1440 GLEAN mRNA 63093 63273 0.667435 - . ID=CGI_10008354; scaffold1440 TRF Tandem_Repeat 63093 63273 80 + . . scaffold1440 GLEAN mRNA 68146 68172 0.667435 - . ID=CGI_10008354; scaffold1440 TRF Tandem_Repeat 68146 68172 54 + . . scaffold1440 GLEAN mRNA 49099 49173 0.667435 - . ID=CGI_10008354; scaffold1440 WUBlastX DNA_Maverick 49099 49173 23 - . . scaffold1440 GLEAN mRNA 177908 177954 0.333291 + . ID=CGI_10008358; scaffold1440 TRF Tandem_Repeat 177908 177954 94 + . . scaffold1440 GLEAN mRNA 178622 178655 0.333291 + . ID=CGI_10008358; scaffold1440 TRF Tandem_Repeat 178622 178655 68 + . . scaffold1440 GLEAN mRNA 186870 186903 0.333291 + . ID=CGI_10008358; scaffold1440 TRF Tandem_Repeat 186870 186903 50 + . . scaffold1440 GLEAN mRNA 187051 187094 0.333291 + . ID=CGI_10008358; scaffold1440 TRF Tandem_Repeat 187051 187094 61 + . . scaffold1440 GLEAN mRNA 188584 189777 0.333291 + . ID=CGI_10008358; scaffold1440 WUBlastX DNA_Sola 188584 189777 232 + . . scaffold1440 GLEAN mRNA 188827 189789 0.333291 + . ID=CGI_10008358; scaffold1440 WUBlastX DNA_Sola 188827 189789 284 + . . scaffold1440 GLEAN mRNA 189782 190339 0.333291 + . ID=CGI_10008358; scaffold1440 WUBlastX DNA_Sola 189782 190339 361 + . . scaffold1643 GLEAN mRNA 19005 19044 1 - . ID=CGI_10008361; scaffold1643 TRF Tandem_Repeat 19005 19044 80 + . . scaffold1643 GLEAN mRNA 105628 105996 0.99993 + . ID=CGI_10008364; scaffold1643 WUBlastX LTR_Pao 105628 105996 219 + . . scaffold1643 GLEAN mRNA 105040 106002 0.99993 + . ID=CGI_10008364; scaffold1643 WUBlastX LTR_Pao 105040 106002 190 + . . scaffold1643 GLEAN mRNA 104920 105513 0.99993 + . ID=CGI_10008364; scaffold1643 WUBlastX LTR_Pao 104920 105513 35 + . . scaffold1643 GLEAN mRNA 105568 106125 0.99993 + . ID=CGI_10008364; scaffold1643 WUBlastX LTR_Pao 105568 106125 204 + . . scaffold1643 GLEAN mRNA 191847 191913 0.99935 - . ID=CGI_10008368; scaffold1643 TRF Tandem_Repeat 191847 191913 57 + . . scaffold1643 GLEAN mRNA 191850 191891 0.99935 - . ID=CGI_10008368; scaffold1643 TRF Tandem_Repeat 191850 191891 52 + . . scaffold42990 GLEAN mRNA 30031 30202 0.648545 - . ID=CGI_10008373; scaffold42990 TRF Tandem_Repeat 30031 30202 263 + . . scaffold42990 GLEAN mRNA 30031 30337 0.648545 - . ID=CGI_10008373; scaffold42990 TRF Tandem_Repeat 30031 30337 375 + . . scaffold42990 GLEAN mRNA 30207 30337 0.648545 - . ID=CGI_10008373; scaffold42990 TRF Tandem_Repeat 30207 30337 165 + . . scaffold42990 GLEAN mRNA 30080 30777 0.648545 - . ID=CGI_10008373; scaffold42990 TRF Tandem_Repeat 30080 30777 619 + . . scaffold42990 GLEAN mRNA 30413 30810 0.648545 - . ID=CGI_10008373; scaffold42990 TRF Tandem_Repeat 30413 30810 521 + . . scaffold42990 GLEAN mRNA 30412 31028 0.648545 - . ID=CGI_10008373; scaffold42990 TRF Tandem_Repeat 30412 31028 677 + . . scaffold42990 GLEAN mRNA 30887 31028 0.648545 - . ID=CGI_10008373; scaffold42990 TRF Tandem_Repeat 30887 31028 241 + . . scaffold42990 GLEAN mRNA 30413 31022 0.648545 - . ID=CGI_10008373; scaffold42990 TRF Tandem_Repeat 30413 31022 690 + . . scaffold42990 GLEAN mRNA 31517 31582 0.648545 - . ID=CGI_10008373; scaffold42990 TRF Tandem_Repeat 31517 31582 118 + . . scaffold42990 GLEAN mRNA 49702 49739 0.999997 - . ID=CGI_10008374; scaffold42990 TRF Tandem_Repeat 49702 49739 76 + . . scaffold42990 GLEAN mRNA 66738 66792 0.52864 + . ID=CGI_10008375; scaffold42990 TRF Tandem_Repeat 66738 66792 56 + . . scaffold42990 GLEAN mRNA 69319 69385 0.52864 + . ID=CGI_10008375; scaffold42990 TRF Tandem_Repeat 69319 69385 116 + . . scaffold42990 GLEAN mRNA 80919 81132 0.276547 + . ID=CGI_10008376; scaffold42990 TRF Tandem_Repeat 80919 81132 302 + . . scaffold42990 GLEAN mRNA 81528 81562 0.276547 + . ID=CGI_10008376; scaffold42990 TRF Tandem_Repeat 81528 81562 63 + . . scaffold42990 GLEAN mRNA 81618 81655 0.276547 + . ID=CGI_10008376; scaffold42990 TRF Tandem_Repeat 81618 81655 76 + . . scaffold42990 GLEAN mRNA 83077 83618 0.276547 + . ID=CGI_10008376; scaffold42990 TRF Tandem_Repeat 83077 83618 688 + . . scaffold42990 GLEAN mRNA 83077 83601 0.276547 + . ID=CGI_10008376; scaffold42990 TRF Tandem_Repeat 83077 83601 658 + . . scaffold42990 GLEAN mRNA 86268 86651 0.276547 + . ID=CGI_10008376; scaffold42990 WUBlastX LINE_RTE-X 86268 86651 111 + . . scaffold42990 GLEAN mRNA 86277 86528 0.276547 + . ID=CGI_10008376; scaffold42990 WUBlastX LINE_RTE-X 86277 86528 157 + . . scaffold42990 GLEAN mRNA 123139 123178 0.530543 - . ID=CGI_10008381; scaffold42990 TRF Tandem_Repeat 123139 123178 71 + . . scaffold42990 GLEAN mRNA 126553 126617 0.530543 - . ID=CGI_10008381; scaffold42990 TRF Tandem_Repeat 126553 126617 130 + . . scaffold42990 GLEAN mRNA 126730 126792 0.530543 - . ID=CGI_10008381; scaffold42990 TRF Tandem_Repeat 126730 126792 126 + . . scaffold42990 GLEAN mRNA 135634 135687 0.530543 - . ID=CGI_10008381; scaffold42990 TRF Tandem_Repeat 135634 135687 108 + . . scaffold42990 GLEAN mRNA 136547 136593 0.530543 - . ID=CGI_10008381; scaffold42990 TRF Tandem_Repeat 136547 136593 94 + . . scaffold42990 GLEAN mRNA 136702 136753 0.530543 - . ID=CGI_10008381; scaffold42990 TRF Tandem_Repeat 136702 136753 77 + . . scaffold42990 GLEAN mRNA 141106 141169 0.530543 - . ID=CGI_10008381; scaffold42990 TRF Tandem_Repeat 141106 141169 56 + . . scaffold42990 GLEAN mRNA 141130 141169 0.530543 - . ID=CGI_10008381; scaffold42990 TRF Tandem_Repeat 141130 141169 62 + . . scaffold42990 GLEAN mRNA 141785 141818 0.530543 - . ID=CGI_10008381; scaffold42990 TRF Tandem_Repeat 141785 141818 68 + . . scaffold42990 GLEAN mRNA 142265 142295 0.530543 - . ID=CGI_10008381; scaffold42990 TRF Tandem_Repeat 142265 142295 62 + . . scaffold42990 GLEAN mRNA 151037 151298 0.999524 + . ID=CGI_10008382; scaffold42990 TRF Tandem_Repeat 151037 151298 371 + . . scaffold42990 GLEAN mRNA 151033 151296 0.999524 + . ID=CGI_10008382; scaffold42990 TRF Tandem_Repeat 151033 151296 303 + . . scaffold42990 GLEAN mRNA 152604 152989 0.999524 + . ID=CGI_10008382; scaffold42990 TRF Tandem_Repeat 152604 152989 583 + . . scaffold42990 GLEAN mRNA 152602 152989 0.999524 + . ID=CGI_10008382; scaffold42990 TRF Tandem_Repeat 152602 152989 749 + . . scaffold42990 GLEAN mRNA 187350 187417 0.999676 + . ID=CGI_10008386; scaffold42990 TRF Tandem_Repeat 187350 187417 104 + . . scaffold42990 GLEAN mRNA 191328 191886 0.999676 + . ID=CGI_10008386; scaffold42990 TRF Tandem_Repeat 191328 191886 765 + . . scaffold42990 GLEAN mRNA 191619 191986 0.999676 + . ID=CGI_10008386; scaffold42990 TRF Tandem_Repeat 191619 191986 258 + . . scaffold42990 GLEAN mRNA 192409 192779 0.999676 + . ID=CGI_10008386; scaffold42990 TRF Tandem_Repeat 192409 192779 600 + . . scaffold42990 GLEAN mRNA 188578 188760 0.999676 + . ID=CGI_10008386; scaffold42990 WUBlastX LINE_RTE-X 188578 188760 20 - . . scaffold42990 GLEAN mRNA 188641 188769 0.999676 + . ID=CGI_10008386; scaffold42990 WUBlastX LINE_RTE-X 188641 188769 45 - . . scaffold42990 GLEAN mRNA 188762 188941 0.999676 + . ID=CGI_10008386; scaffold42990 WUBlastX LINE_RTE-X 188762 188941 56 - . . scaffold42990 GLEAN mRNA 201486 201522 1 - . ID=CGI_10008387; scaffold42990 TRF Tandem_Repeat 201486 201522 74 + . . scaffold42990 GLEAN mRNA 205124 205175 1 - . ID=CGI_10008387; scaffold42990 TRF Tandem_Repeat 205124 205175 104 + . . scaffold1687 GLEAN mRNA 12714 12758 0.999555 - . ID=CGI_10008388; scaffold1687 TRF Tandem_Repeat 12714 12758 74 + . . scaffold1687 GLEAN mRNA 87700 87748 0.699738 + . ID=CGI_10008391; scaffold1687 TRF Tandem_Repeat 87700 87748 98 + . . scaffold1687 GLEAN mRNA 90227 90343 0.699738 + . ID=CGI_10008391; scaffold1687 TRF Tandem_Repeat 90227 90343 109 + . . scaffold1687 GLEAN mRNA 90229 90343 0.699738 + . ID=CGI_10008391; scaffold1687 TRF Tandem_Repeat 90229 90343 107 + . . scaffold1687 GLEAN mRNA 108554 108759 0.813408 + . ID=CGI_10008392; scaffold1687 TRF Tandem_Repeat 108554 108759 121 + . . scaffold1687 GLEAN mRNA 137781 137815 0.489156 + . ID=CGI_10008393; scaffold1687 TRF Tandem_Repeat 137781 137815 52 + . . scaffold1687 GLEAN mRNA 138876 138931 0.489156 + . ID=CGI_10008393; scaffold1687 TRF Tandem_Repeat 138876 138931 103 + . . scaffold1687 GLEAN mRNA 175921 176232 0.898283 + . ID=CGI_10008394; scaffold1687 WUBlastX DNA_IS4EU 175921 176232 33 + . . scaffold1687 GLEAN mRNA 178891 179523 0.898283 + . ID=CGI_10008394; scaffold1687 WUBlastX DNA_Kolobok-IS4 178891 179523 168 - . . scaffold1687 GLEAN mRNA 176920 177084 0.898283 + . ID=CGI_10008394; scaffold1687 WUBlastX DNA_IS4EU 176920 177084 52 + . . scaffold1687 GLEAN mRNA 177195 177815 0.898283 + . ID=CGI_10008394; scaffold1687 WUBlastX DNA_IS4EU 177195 177815 361 + . . scaffold1687 GLEAN mRNA 178375 178560 0.898283 + . ID=CGI_10008394; scaffold1687 WUBlastX DNA_IS4EU 178375 178560 98 + . . scaffold1687 GLEAN mRNA 179567 179776 0.898283 + . ID=CGI_10008394; scaffold1687 WUBlastX DNA_IS4EU 179567 179776 46 - . . scaffold1687 GLEAN mRNA 175933 176172 0.898283 + . ID=CGI_10008394; scaffold1687 WUBlastX DNA_P 175933 176172 38 + . . scaffold1687 GLEAN mRNA 178903 179430 0.898283 + . ID=CGI_10008394; scaffold1687 WUBlastX DNA_IS4EU 178903 179430 177 - . . scaffold1687 GLEAN mRNA 207152 207340 0.325365 + . ID=CGI_10008398; scaffold1687 TRF Tandem_Repeat 207152 207340 279 + . . scaffold1687 GLEAN mRNA 207180 207415 0.325365 + . ID=CGI_10008398; scaffold1687 TRF Tandem_Repeat 207180 207415 168 + . . scaffold718 GLEAN mRNA 88371 88412 1 - . ID=CGI_10008418; scaffold718 TRF Tandem_Repeat 88371 88412 68 + . . scaffold718 GLEAN mRNA 89185 89245 1 - . ID=CGI_10008418; scaffold718 TRF Tandem_Repeat 89185 89245 108 + . . scaffold718 GLEAN mRNA 90391 90432 1 - . ID=CGI_10008418; scaffold718 TRF Tandem_Repeat 90391 90432 84 + . . scaffold718 GLEAN mRNA 129052 129088 0.999871 - . ID=CGI_10008421; scaffold718 TRF Tandem_Repeat 129052 129088 67 + . . scaffold718 GLEAN mRNA 150778 150818 0.322607 - . ID=CGI_10008422; scaffold718 TRF Tandem_Repeat 150778 150818 82 + . . scaffold138 GLEAN mRNA 2601 2648 0.879441 + . ID=CGI_10008423; scaffold138 TRF Tandem_Repeat 2601 2648 87 + . . scaffold138 GLEAN mRNA 3324 3365 0.879441 + . ID=CGI_10008423; scaffold138 TRF Tandem_Repeat 3324 3365 84 + . . scaffold138 GLEAN mRNA 12438 12485 0.879441 + . ID=CGI_10008423; scaffold138 TRF Tandem_Repeat 12438 12485 96 + . . scaffold138 GLEAN mRNA 28047 28466 0.879441 + . ID=CGI_10008423; scaffold138 WUBlastX LINE_L1-Tx1 28047 28466 42 - . . scaffold138 GLEAN mRNA 26233 26649 0.879441 + . ID=CGI_10008423; scaffold138 WUBlastX LINE_L1-Tx1 26233 26649 96 - . . scaffold138 GLEAN mRNA 26070 26207 0.879441 + . ID=CGI_10008423; scaffold138 WUBlastX LINE_L1-Tx1 26070 26207 37 - . . scaffold138 GLEAN mRNA 27886 28029 0.879441 + . ID=CGI_10008423; scaffold138 WUBlastX LINE_L1-Tx1 27886 28029 90 - . . scaffold138 GLEAN mRNA 26236 26535 0.879441 + . ID=CGI_10008423; scaffold138 WUBlastX LINE_L1-Tx1 26236 26535 140 - . . scaffold138 GLEAN mRNA 28032 28358 0.879441 + . ID=CGI_10008423; scaffold138 WUBlastX LINE_L1-Tx1 28032 28358 63 - . . scaffold138 GLEAN mRNA 27853 28038 0.879441 + . ID=CGI_10008423; scaffold138 WUBlastX LINE_L1-Tx1 27853 28038 85 - . . scaffold138 GLEAN mRNA 26103 26240 0.879441 + . ID=CGI_10008423; scaffold138 WUBlastX LINE_L1-Tx1 26103 26240 40 - . . scaffold138 GLEAN mRNA 27793 28029 0.879441 + . ID=CGI_10008423; scaffold138 WUBlastX LINE_L1-Tx1 27793 28029 57 - . . scaffold138 GLEAN mRNA 28047 28154 0.879441 + . ID=CGI_10008423; scaffold138 WUBlastX LINE_L1 28047 28154 64 - . . scaffold138 GLEAN mRNA 29658 29897 0.879441 + . ID=CGI_10008423; scaffold138 WUBlastX LINE_L1-Tx1 29658 29897 22 - . . scaffold138 GLEAN mRNA 28319 28582 0.879441 + . ID=CGI_10008423; scaffold138 WUBlastX LINE_L1 28319 28582 41 - . . scaffold138 GLEAN mRNA 29733 29906 0.879441 + . ID=CGI_10008423; scaffold138 WUBlastX LINE_L1-Tx1 29733 29906 43 - . . scaffold138 GLEAN mRNA 45463 46054 1 + . ID=CGI_10008424; scaffold138 TRF Tandem_Repeat 45463 46054 586 + . . scaffold138 GLEAN mRNA 46822 47266 1 + . ID=CGI_10008424; scaffold138 TRF Tandem_Repeat 46822 47266 511 + . . scaffold138 GLEAN mRNA 46822 47266 1 + . ID=CGI_10008424; scaffold138 TRF Tandem_Repeat 46822 47266 574 + . . scaffold138 GLEAN mRNA 48687 49744 1 + . ID=CGI_10008424; scaffold138 TRF Tandem_Repeat 48687 49744 1072 + . . scaffold138 GLEAN mRNA 55650 55688 0.998993 - . ID=CGI_10008425; scaffold138 TRF Tandem_Repeat 55650 55688 78 + . . scaffold138 GLEAN mRNA 75704 75919 0.998636 - . ID=CGI_10008427; scaffold138 WUBlastX LINE_L1-Tx1 75704 75919 49 - . . scaffold138 GLEAN mRNA 75918 76130 0.998636 - . ID=CGI_10008427; scaffold138 WUBlastX LINE_L1-Tx1 75918 76130 70 - . . scaffold138 GLEAN mRNA 76008 76190 0.998636 - . ID=CGI_10008427; scaffold138 WUBlastX LINE_L1-Tx1 76008 76190 33 - . . scaffold138 GLEAN mRNA 75421 75717 0.998636 - . ID=CGI_10008427; scaffold138 WUBlastX LINE_L1 75421 75717 49 - . . scaffold138 GLEAN mRNA 86697 86882 1 + . ID=CGI_10008428; scaffold138 WUBlastX LINE_RTE-X 86697 86882 70 - . . scaffold138 GLEAN mRNA 86482 86679 1 + . ID=CGI_10008428; scaffold138 WUBlastX LINE_RTE-X 86482 86679 41 - . . scaffold138 GLEAN mRNA 86694 86969 1 + . ID=CGI_10008428; scaffold138 WUBlastX LINE_RTE-X 86694 86969 66 - . . scaffold138 GLEAN mRNA 164292 164687 0.989024 - . ID=CGI_10008431; scaffold138 WUBlastX LINE_CR1-L2 164292 164687 50 - . . scaffold138 GLEAN mRNA 164292 164621 0.989024 - . ID=CGI_10008431; scaffold138 WUBlastX LINE_L2 164292 164621 100 - . . scaffold43038 GLEAN mRNA 21907 21945 0.734735 + . ID=CGI_10008439; scaffold43038 TRF Tandem_Repeat 21907 21945 78 + . . scaffold43038 GLEAN mRNA 32407 32456 0.654973 + . ID=CGI_10008440; scaffold43038 TRF Tandem_Repeat 32407 32456 73 + . . scaffold43038 GLEAN mRNA 39586 40992 0.654973 + . ID=CGI_10008440; scaffold43038 TRF Tandem_Repeat 39586 40992 1475 + . . scaffold43038 GLEAN mRNA 39586 40966 0.654973 + . ID=CGI_10008440; scaffold43038 TRF Tandem_Repeat 39586 40966 1685 + . . scaffold43038 GLEAN mRNA 48354 48397 0.654973 + . ID=CGI_10008440; scaffold43038 TRF Tandem_Repeat 48354 48397 88 + . . scaffold43038 GLEAN mRNA 89278 89334 0.999351 - . ID=CGI_10008443; scaffold43038 TRF Tandem_Repeat 89278 89334 105 + . . scaffold43038 GLEAN mRNA 96721 96762 0.999351 - . ID=CGI_10008443; scaffold43038 TRF Tandem_Repeat 96721 96762 57 + . . scaffold43038 GLEAN mRNA 97316 98347 0.999351 - . ID=CGI_10008443; scaffold43038 WUBlastX LINE_RTE-X 97316 98347 77 - . . scaffold43038 GLEAN mRNA 97661 98347 0.999351 - . ID=CGI_10008443; scaffold43038 WUBlastX LINE_RTE-X 97661 98347 109 - . . scaffold43038 GLEAN mRNA 96721 96762 0.999027 + . ID=CGI_10008444; scaffold43038 TRF Tandem_Repeat 96721 96762 57 + . . scaffold43038 GLEAN mRNA 97316 98347 0.999027 + . ID=CGI_10008444; scaffold43038 WUBlastX LINE_RTE-X 97316 98347 77 - . . scaffold43038 GLEAN mRNA 97661 98347 0.999027 + . ID=CGI_10008444; scaffold43038 WUBlastX LINE_RTE-X 97661 98347 109 - . . scaffold43038 GLEAN mRNA 123837 123884 0.999283 + . ID=CGI_10008447; scaffold43038 TRF Tandem_Repeat 123837 123884 78 + . . scaffold43038 GLEAN mRNA 131066 131691 0.999283 + . ID=CGI_10008447; scaffold43038 TRF Tandem_Repeat 131066 131691 813 + . . scaffold43038 GLEAN mRNA 165033 165259 1 + . ID=CGI_10008448; scaffold43038 TRF Tandem_Repeat 165033 165259 167 + . . scaffold43038 GLEAN mRNA 165024 165255 1 + . ID=CGI_10008448; scaffold43038 TRF Tandem_Repeat 165024 165255 177 + . . scaffold43038 GLEAN mRNA 165670 165697 1 + . ID=CGI_10008448; scaffold43038 TRF Tandem_Repeat 165670 165697 56 + . . scaffold43008 GLEAN mRNA 4664 4703 0.982229 + . ID=CGI_10008457; scaffold43008 TRF Tandem_Repeat 4664 4703 53 + . . scaffold43008 GLEAN mRNA 4665 4707 0.982229 + . ID=CGI_10008457; scaffold43008 TRF Tandem_Repeat 4665 4707 59 + . . scaffold43008 GLEAN mRNA 4734 5529 0.982229 + . ID=CGI_10008457; scaffold43008 TRF Tandem_Repeat 4734 5529 1084 + . . scaffold43008 GLEAN mRNA 14755 14810 0.982229 + . ID=CGI_10008457; scaffold43008 TRF Tandem_Repeat 14755 14810 105 + . . scaffold43008 GLEAN mRNA 4122 4568 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 4122 4568 48 + . . scaffold43008 GLEAN mRNA 3650 3841 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 3650 3841 59 + . . scaffold43008 GLEAN mRNA 4122 4418 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 4122 4418 84 + . . scaffold43008 GLEAN mRNA 11610 12017 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX DNA_Harbinger 11610 12017 183 - . . scaffold43008 GLEAN mRNA 2896 3642 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 2896 3642 148 + . . scaffold43008 GLEAN mRNA 2603 2764 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_L1 2603 2764 42 + . . scaffold43008 GLEAN mRNA 2579 2701 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_L2 2579 2701 30 + . . scaffold43008 GLEAN mRNA 2462 2701 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 2462 2701 28 + . . scaffold43008 GLEAN mRNA 10969 11262 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX DNA_Harbinger 10969 11262 86 + . . scaffold43008 GLEAN mRNA 2760 2891 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 2760 2891 78 + . . scaffold43008 GLEAN mRNA 2896 3327 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 2896 3327 197 + . . scaffold43008 GLEAN mRNA 3315 4439 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 3315 4439 55 + . . scaffold43008 GLEAN mRNA 2736 2888 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_L2 2736 2888 44 + . . scaffold43008 GLEAN mRNA 4122 4487 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 4122 4487 68 + . . scaffold43008 GLEAN mRNA 20891 21109 0.999674 - . ID=CGI_10008458; scaffold43008 WUBlastX LINE_Jockey 20891 21109 52 - . . scaffold43008 GLEAN mRNA 33294 33351 0.999674 - . ID=CGI_10008458; scaffold43008 TRF Tandem_Repeat 33294 33351 73 + . . scaffold43008 GLEAN mRNA 33463 33588 0.999674 - . ID=CGI_10008458; scaffold43008 WUBlastX LTR_Gypsy 33463 33588 22 - . . scaffold43008 GLEAN mRNA 33794 33811 0.999674 - . ID=CGI_10008458; scaffold43008 WUBlastX DNA_Kolobok-Hyd 33794 34570 53 - . . scaffold43008 GLEAN mRNA 32769 33134 0.999674 - . ID=CGI_10008458; scaffold43008 WUBlastX LTR_Gypsy 32769 33134 72 - . . scaffold43008 GLEAN mRNA 29007 33062 0.999674 - . ID=CGI_10008458; scaffold43008 WUBlastX LTR_Gypsy 29007 33062 2124 - . . scaffold43008 GLEAN mRNA 50828 51052 0.543138 - . ID=CGI_10008460; scaffold43008 WUBlastX DNA_Sola 50828 51052 52 - . . scaffold43008 GLEAN mRNA 51598 51714 0.543138 - . ID=CGI_10008460; scaffold43008 WUBlastX DNA_Sola 51598 51723 39 - . . scaffold43008 GLEAN mRNA 56168 56299 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 56168 56299 25 - . . scaffold43008 GLEAN mRNA 54820 55011 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 54820 55011 86 + . . scaffold43008 GLEAN mRNA 55418 55597 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 55418 55597 63 - . . scaffold43008 GLEAN mRNA 55669 55911 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 55669 55911 61 - . . scaffold43008 GLEAN mRNA 56103 56174 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 56103 56174 37 - . . scaffold43008 GLEAN mRNA 56195 56305 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 56195 56305 72 - . . scaffold43008 GLEAN mRNA 56498 57094 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 56498 57094 136 - . . scaffold43008 GLEAN mRNA 54859 55020 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 54859 55020 89 + . . scaffold43008 GLEAN mRNA 56501 56917 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 56501 56917 150 - . . scaffold43008 GLEAN mRNA 84633 84791 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1 84633 84791 67 - . . scaffold43008 GLEAN mRNA 84603 84791 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 84603 84791 54 - . . scaffold43008 GLEAN mRNA 84721 85107 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 84721 85107 67 - . . scaffold43008 GLEAN mRNA 85380 86333 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 85380 86333 193 - . . scaffold43008 GLEAN mRNA 86135 86671 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 86135 86671 77 - . . scaffold43008 GLEAN mRNA 84262 84363 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 84262 84363 27 - . . scaffold43008 GLEAN mRNA 84205 84414 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 84205 84414 22 - . . scaffold43008 GLEAN mRNA 85383 86114 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 85383 86114 249 - . . scaffold43008 GLEAN mRNA 86135 86500 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 86135 86500 99 - . . scaffold43008 GLEAN mRNA 85037 85351 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1 85037 85351 138 - . . scaffold43008 GLEAN mRNA 85100 85351 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 85100 85351 176 - . . scaffold43008 GLEAN mRNA 84238 84402 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 84238 84402 24 - . . scaffold43008 GLEAN mRNA 84265 84522 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1 84265 84522 24 - . . scaffold43008 GLEAN mRNA 166788 166837 0.990448 - . ID=CGI_10008464; scaffold43008 TRF Tandem_Repeat 166788 166837 82 + . . scaffold1729 GLEAN mRNA 53353 55116 0.999674 + . ID=CGI_10008485; scaffold1729 WUBlastX DNA_En-Spm 53353 55116 334 + . . scaffold1729 GLEAN mRNA 53461 54555 0.999674 + . ID=CGI_10008485; scaffold1729 WUBlastX DNA_En-Spm 53461 54555 345 + . . scaffold1729 GLEAN mRNA 136771 136806 1 - . ID=CGI_10008488; scaffold1729 TRF Tandem_Repeat 136771 136806 72 + . . scaffold1729 GLEAN mRNA 139824 139898 1 - . ID=CGI_10008488; scaffold1729 TRF Tandem_Repeat 139824 139898 141 + . . scaffold1729 GLEAN mRNA 140542 140594 1 - . ID=CGI_10008488; scaffold1729 TRF Tandem_Repeat 140542 140594 97 + . . scaffold1729 GLEAN mRNA 156679 156717 0.650963 - . ID=CGI_10008489; scaffold1729 TRF Tandem_Repeat 156679 156717 53 + . . scaffold1729 GLEAN mRNA 157883 157935 0.650963 - . ID=CGI_10008489; scaffold1729 TRF Tandem_Repeat 157883 157935 106 + . . scaffold1729 GLEAN mRNA 159032 159059 0.650963 - . ID=CGI_10008489; scaffold1729 TRF Tandem_Repeat 159032 159059 56 + . . scaffold1729 GLEAN mRNA 156679 156717 0.961106 + . ID=CGI_10008490; scaffold1729 TRF Tandem_Repeat 156679 156717 53 + . . scaffold1729 GLEAN mRNA 157883 157935 0.961106 + . ID=CGI_10008490; scaffold1729 TRF Tandem_Repeat 157883 157935 106 + . . scaffold1729 GLEAN mRNA 159032 159059 0.961106 + . ID=CGI_10008490; scaffold1729 TRF Tandem_Repeat 159032 159059 56 + . . scaffold1729 GLEAN mRNA 163036 163061 0.961106 + . ID=CGI_10008490; scaffold1729 TRF Tandem_Repeat 163036 163061 52 + . . scaffold1729 GLEAN mRNA 197998 198885 0.822484 + . ID=CGI_10008492; scaffold1729 WUBlastX LTR_Ngaro 197998 198885 490 + . . scaffold1729 GLEAN mRNA 197242 197319 0.822484 + . ID=CGI_10008492; scaffold1729 WUBlastX LTR_Ngaro 197242 197319 26 + . . scaffold1729 GLEAN mRNA 197260 197319 0.822484 + . ID=CGI_10008492; scaffold1729 WUBlastX LTR_Ngaro 197260 197319 35 + . . scaffold43036 GLEAN mRNA 27045 27152 1 - . ID=CGI_10008493; scaffold43036 WUBlastX LTR_Pao 27045 27152 123 - . . scaffold43036 GLEAN mRNA 27048 27152 1 - . ID=CGI_10008493; scaffold43036 WUBlastX LTR_Pao 27048 27182 104 - . . scaffold43036 GLEAN mRNA 26859 26960 1 - . ID=CGI_10008493; scaffold43036 WUBlastX LTR_Pao 26859 26960 115 - . . scaffold43036 GLEAN mRNA 78666 78724 0.963004 + . ID=CGI_10008495; scaffold43036 TRF Tandem_Repeat 78666 78724 118 + . . scaffold43036 GLEAN mRNA 90060 90086 0.963004 + . ID=CGI_10008495; scaffold43036 TRF Tandem_Repeat 90060 90086 54 + . . scaffold43036 GLEAN mRNA 97955 98022 1 + . ID=CGI_10008496; scaffold43036 TRF Tandem_Repeat 97955 98022 136 + . . scaffold43036 GLEAN mRNA 98059 98086 1 + . ID=CGI_10008496; scaffold43036 TRF Tandem_Repeat 98059 98086 56 + . . scaffold43036 GLEAN mRNA 105237 105307 1 + . ID=CGI_10008496; scaffold43036 TRF Tandem_Repeat 105237 105307 52 + . . scaffold43036 GLEAN mRNA 126200 126225 1 - . ID=CGI_10008497; scaffold43036 TRF Tandem_Repeat 126200 126225 52 + . . scaffold43036 GLEAN mRNA 159421 159462 0.999804 + . ID=CGI_10008498; scaffold43036 TRF Tandem_Repeat 159421 159462 50 + . . scaffold43036 GLEAN mRNA 160749 161567 0.999804 + . ID=CGI_10008498; scaffold43036 TRF Tandem_Repeat 160749 161567 980 + . . scaffold43036 GLEAN mRNA 149188 149373 0.999804 + . ID=CGI_10008498; scaffold43036 WUBlastX DNA_hAT-hAT5 149188 149373 38 + . . scaffold43036 GLEAN mRNA 150595 150807 0.999804 + . ID=CGI_10008498; scaffold43036 WUBlastX DNA_hAT-Blackja 150595 150807 106 + . . scaffold43036 GLEAN mRNA 150806 151774 0.999804 + . ID=CGI_10008498; scaffold43036 WUBlastX DNA_hAT-Blackja 150806 151774 322 + . . scaffold43036 GLEAN mRNA 149711 149761 0.999804 + . ID=CGI_10008498; scaffold43036 WUBlastX DNA_hAT-Blackja 149711 149761 25 + . . scaffold43036 GLEAN mRNA 151848 152153 0.999804 + . ID=CGI_10008498; scaffold43036 WUBlastX DNA_hAT-Blackja 151848 152153 73 + . . scaffold43036 GLEAN mRNA 151466 151843 0.999804 + . ID=CGI_10008498; scaffold43036 WUBlastX DNA_hAT-Blackja 151466 151843 69 + . . scaffold43036 GLEAN mRNA 167431 167512 0.999804 + . ID=CGI_10008498; scaffold43036 TRF Tandem_Repeat 167431 167512 155 + . . scaffold43036 GLEAN mRNA 171647 171790 0.999804 + . ID=CGI_10008498; scaffold43036 WUBlastX LINE_CR1-L2 171647 171790 45 + . . scaffold43028 GLEAN mRNA 3547 3599 0.811456 - . ID=CGI_10008500; scaffold43028 TRF Tandem_Repeat 3547 3599 106 + . . scaffold43028 GLEAN mRNA 17106 17261 0.998274 + . ID=CGI_10008502; scaffold43028 WUBlastX LINE_RTE-BovB 17106 17261 37 - . . scaffold43028 GLEAN mRNA 69706 70002 1 + . ID=CGI_10008504; scaffold43028 WUBlastX LINE_I 69706 70002 38 + . . scaffold43028 GLEAN mRNA 112715 112768 0.470116 + . ID=CGI_10008507; scaffold43028 TRF Tandem_Repeat 112715 112768 108 + . . scaffold43028 GLEAN mRNA 126010 126081 0.470116 + . ID=CGI_10008507; scaffold43028 TRF Tandem_Repeat 126010 126081 137 + . . scaffold43028 GLEAN mRNA 128424 129549 0.470116 + . ID=CGI_10008507; scaffold43028 TRF Tandem_Repeat 128424 129549 1252 + . . scaffold43028 GLEAN mRNA 114515 115446 0.470116 + . ID=CGI_10008507; scaffold43028 TRF Tandem_Repeat 114515 115446 1291 + . . scaffold43028 GLEAN mRNA 149921 149973 1 - . ID=CGI_10008510; scaffold43028 TRF Tandem_Repeat 149921 149973 106 + . . scaffold148 GLEAN mRNA 166882 166931 0.999375 - . ID=CGI_10008521; scaffold148 TRF Tandem_Repeat 166882 166931 100 + . . scaffold148 GLEAN mRNA 166961 167007 0.999375 - . ID=CGI_10008521; scaffold148 TRF Tandem_Repeat 166961 167007 94 + . . scaffold148 GLEAN mRNA 177351 177487 0.544852 + . ID=CGI_10008522; scaffold148 TRF Tandem_Repeat 177351 177487 199 + . . scaffold1142 GLEAN mRNA 23967 24007 0.998343 + . ID=CGI_10008525; scaffold1142 TRF Tandem_Repeat 23967 24007 68 + . . scaffold1142 GLEAN mRNA 32324 32356 0.998343 + . ID=CGI_10008525; scaffold1142 TRF Tandem_Repeat 32324 32356 66 + . . scaffold1142 GLEAN mRNA 27786 28511 0.998343 + . ID=CGI_10008525; scaffold1142 WUBlastX LINE_L1-Tx1 27786 28511 67 + . . scaffold1142 GLEAN mRNA 27897 28544 0.998343 + . ID=CGI_10008525; scaffold1142 WUBlastX LINE_L1 27897 28544 108 + . . scaffold1142 GLEAN mRNA 38638 38708 0.998343 + . ID=CGI_10008525; scaffold1142 TRF Tandem_Repeat 38638 38708 142 + . . scaffold1142 GLEAN mRNA 50952 51041 0.998343 + . ID=CGI_10008525; scaffold1142 TRF Tandem_Repeat 50952 51041 153 + . . scaffold1142 GLEAN mRNA 62620 62664 1 - . ID=CGI_10008527; scaffold1142 TRF Tandem_Repeat 62620 62664 90 + . . scaffold1142 GLEAN mRNA 200397 200440 0.544674 + . ID=CGI_10008535; scaffold1142 TRF Tandem_Repeat 200397 200440 88 + . . scaffold894 GLEAN mRNA 16621 16666 0.650867 + . ID=CGI_10008537; scaffold894 TRF Tandem_Repeat 16621 16666 92 + . . scaffold894 GLEAN mRNA 22727 22876 0.650867 + . ID=CGI_10008537; scaffold894 TRF Tandem_Repeat 22727 22876 158 + . . scaffold894 GLEAN mRNA 26518 26578 0.650867 + . ID=CGI_10008537; scaffold894 TRF Tandem_Repeat 26518 26578 58 + . . scaffold894 GLEAN mRNA 31200 31255 0.650867 + . ID=CGI_10008537; scaffold894 TRF Tandem_Repeat 31200 31255 76 + . . scaffold894 GLEAN mRNA 31209 31256 0.650867 + . ID=CGI_10008537; scaffold894 TRF Tandem_Repeat 31209 31256 69 + . . scaffold894 GLEAN mRNA 31537 31622 0.650867 + . ID=CGI_10008537; scaffold894 TRF Tandem_Repeat 31537 31622 145 + . . scaffold894 GLEAN mRNA 43998 44079 0.999999 + . ID=CGI_10008538; scaffold894 TRF Tandem_Repeat 43998 44079 123 + . . scaffold894 GLEAN mRNA 44472 44533 0.999999 + . ID=CGI_10008538; scaffold894 TRF Tandem_Repeat 44472 44533 124 + . . scaffold894 GLEAN mRNA 55541 55586 0.999999 + . ID=CGI_10008538; scaffold894 TRF Tandem_Repeat 55541 55586 92 + . . scaffold894 GLEAN mRNA 59738 59784 0.642558 - . ID=CGI_10008539; scaffold894 TRF Tandem_Repeat 59738 59784 94 + . . scaffold894 GLEAN mRNA 61351 61404 0.642558 - . ID=CGI_10008539; scaffold894 TRF Tandem_Repeat 61351 61404 108 + . . scaffold894 GLEAN mRNA 71865 72085 0.282644 + . ID=CGI_10008541; scaffold894 TRF Tandem_Repeat 71865 72085 158 + . . scaffold894 GLEAN mRNA 72487 73237 0.282644 + . ID=CGI_10008541; scaffold894 TRF Tandem_Repeat 72487 73237 1118 + . . scaffold894 GLEAN mRNA 95592 95662 0.923835 - . ID=CGI_10008542; scaffold894 TRF Tandem_Repeat 95592 95662 78 + . . scaffold894 GLEAN mRNA 95592 95662 0.923835 - . ID=CGI_10008542; scaffold894 TRF Tandem_Repeat 95592 95662 67 + . . scaffold894 GLEAN mRNA 95593 95659 0.923835 - . ID=CGI_10008542; scaffold894 TRF Tandem_Repeat 95593 95659 68 + . . scaffold894 GLEAN mRNA 96369 96404 0.923835 - . ID=CGI_10008542; scaffold894 TRF Tandem_Repeat 96369 96404 56 + . . scaffold894 GLEAN mRNA 130093 130657 0.568904 + . ID=CGI_10008544; scaffold894 TRF Tandem_Repeat 130093 130657 887 + . . scaffold894 GLEAN mRNA 131075 131296 0.568904 + . ID=CGI_10008544; scaffold894 TRF Tandem_Repeat 131075 131296 444 + . . scaffold894 GLEAN mRNA 131573 132045 0.568904 + . ID=CGI_10008544; scaffold894 TRF Tandem_Repeat 131573 132045 777 + . . scaffold894 GLEAN mRNA 152465 153283 0.544755 - . ID=CGI_10008547; scaffold894 WUBlastX DNA_hAT-Tip100 152465 153283 198 - . . scaffold894 GLEAN mRNA 152465 153079 0.544755 - . ID=CGI_10008547; scaffold894 WUBlastX DNA_hAT-Tip100 152465 153079 303 - . . scaffold894 GLEAN mRNA 183566 184030 0.999624 + . ID=CGI_10008548; scaffold894 WUBlastX LINE_L1-Tx1 183566 184030 35 + . . scaffold894 GLEAN mRNA 181413 181877 0.999624 + . ID=CGI_10008548; scaffold894 WUBlastX LINE_L1-Tx1 181413 181877 35 + . . scaffold894 GLEAN mRNA 181431 181766 0.999624 + . ID=CGI_10008548; scaffold894 WUBlastX LINE_L1-Tx1 181431 181766 96 + . . scaffold894 GLEAN mRNA 183584 183919 0.999624 + . ID=CGI_10008548; scaffold894 WUBlastX LINE_L1-Tx1 183584 183919 96 + . . scaffold43026 GLEAN mRNA 143672 143926 0.699088 + . ID=CGI_10008550; scaffold43026 WUBlastX LINE_RTE-BovB 143672 143926 58 - . . scaffold43026 GLEAN mRNA 143678 143830 0.699088 + . ID=CGI_10008550; scaffold43026 WUBlastX LINE_RTE-BovB 143678 143830 94 - . . scaffold43024 GLEAN mRNA 92771 93677 0.558395 + . ID=CGI_10008556; scaffold43024 TRF Tandem_Repeat 92771 93677 1485 + . . scaffold43024 GLEAN mRNA 132840 133245 0.47027 + . ID=CGI_10008557; scaffold43024 TRF Tandem_Repeat 132840 133245 374 + . . scaffold43024 GLEAN mRNA 133028 133337 0.47027 + . ID=CGI_10008557; scaffold43024 TRF Tandem_Repeat 133028 133337 250 + . . scaffold43024 GLEAN mRNA 133668 133717 0.47027 + . ID=CGI_10008557; scaffold43024 TRF Tandem_Repeat 133668 133717 100 + . . scaffold43024 GLEAN mRNA 134460 134507 0.47027 + . ID=CGI_10008557; scaffold43024 TRF Tandem_Repeat 134460 134507 96 + . . scaffold43024 GLEAN mRNA 184383 184458 0.754583 + . ID=CGI_10008561; scaffold43024 TRF Tandem_Repeat 184383 184458 152 + . . scaffold43024 GLEAN mRNA 190183 190232 0.999218 - . ID=CGI_10008562; scaffold43024 TRF Tandem_Repeat 190183 190232 100 + . . scaffold43084 GLEAN mRNA 2887 3426 0.988218 - . ID=CGI_10008563; scaffold43084 WUBlastX LINE_Penelope 2887 3426 258 - . . scaffold43084 GLEAN mRNA 3387 4136 0.988218 - . ID=CGI_10008563; scaffold43084 WUBlastX LINE_Penelope 3387 4136 497 - . . scaffold43084 GLEAN mRNA 79531 79571 0.998756 + . ID=CGI_10008564; scaffold43084 TRF Tandem_Repeat 79531 79571 82 + . . scaffold43084 GLEAN mRNA 101283 101457 0.998741 + . ID=CGI_10008565; scaffold43084 TRF Tandem_Repeat 101283 101457 187 + . . scaffold43084 GLEAN mRNA 127766 127826 0.298679 + . ID=CGI_10008568; scaffold43084 TRF Tandem_Repeat 127766 127826 122 + . . scaffold43084 GLEAN mRNA 129878 129937 0.298679 + . ID=CGI_10008568; scaffold43084 TRF Tandem_Repeat 129878 129937 75 + . . scaffold43084 GLEAN mRNA 130683 130734 0.298679 + . ID=CGI_10008568; scaffold43084 TRF Tandem_Repeat 130683 130734 50 + . . scaffold43084 GLEAN mRNA 140341 140643 0.298679 + . ID=CGI_10008568; scaffold43084 TRF Tandem_Repeat 140341 140643 561 + . . scaffold43084 GLEAN mRNA 142652 142945 0.298679 + . ID=CGI_10008568; scaffold43084 WUBlastX DNA_hAT-Tip100 142652 142945 61 + . . scaffold43084 GLEAN mRNA 130905 132237 0.298679 + . ID=CGI_10008568; scaffold43084 TRF Tandem_Repeat 130905 132237 1402 + . . scaffold43084 GLEAN mRNA 179038 179093 0.999676 - . ID=CGI_10008570; scaffold43084 TRF Tandem_Repeat 179038 179093 112 + . . scaffold43084 GLEAN mRNA 179551 179606 0.999676 - . ID=CGI_10008570; scaffold43084 TRF Tandem_Repeat 179551 179606 112 + . . scaffold43084 GLEAN mRNA 180064 180098 0.999676 - . ID=CGI_10008570; scaffold43084 TRF Tandem_Repeat 180064 180098 70 + . . scaffold43084 GLEAN mRNA 192165 192458 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 192165 192458 165 + . . scaffold43084 GLEAN mRNA 192188 192386 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 192188 192386 117 + . . scaffold43084 GLEAN mRNA 192265 192324 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 192265 192324 61 + . . scaffold43084 GLEAN mRNA 192367 192431 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 192367 192431 53 + . . scaffold43084 GLEAN mRNA 192487 192548 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 192487 192548 79 + . . scaffold43084 GLEAN mRNA 193861 194186 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 193861 194186 571 + . . scaffold43084 GLEAN mRNA 196319 196344 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 196319 196344 52 + . . scaffold43084 GLEAN mRNA 199304 199342 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 199304 199342 78 + . . scaffold43084 GLEAN mRNA 199340 199371 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 199340 199371 64 + . . scaffold43084 GLEAN mRNA 200126 200666 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 200126 200666 665 + . . scaffold43084 GLEAN mRNA 200126 200666 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 200126 200666 665 + . . scaffold43084 GLEAN mRNA 203407 203464 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 203407 203464 82 + . . scaffold43084 GLEAN mRNA 205599 205785 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 205599 205785 203 + . . scaffold43084 GLEAN mRNA 205784 205971 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 205784 205971 214 + . . scaffold43084 GLEAN mRNA 205784 205920 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 205784 205920 112 + . . scaffold43084 GLEAN mRNA 205862 205973 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 205862 205973 109 + . . scaffold43084 GLEAN mRNA 206058 206144 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 206058 206144 113 + . . scaffold43084 GLEAN mRNA 206410 206463 0.811128 - . ID=CGI_10008571; scaffold43084 TRF Tandem_Repeat 206410 206463 90 + . . scaffold525 GLEAN mRNA 58891 59064 0.665804 + . ID=CGI_10008573; scaffold525 WUBlastX DNA_IS4EU 58891 59064 23 + . . scaffold525 GLEAN mRNA 59853 60392 0.665804 + . ID=CGI_10008573; scaffold525 WUBlastX DNA_Kolobok-IS4 59853 60392 269 + . . scaffold525 GLEAN mRNA 58957 59064 0.665804 + . ID=CGI_10008573; scaffold525 WUBlastX DNA_IS4EU 58957 59064 33 + . . scaffold525 GLEAN mRNA 156860 156900 0.279546 - . ID=CGI_10008575; scaffold525 TRF Tandem_Repeat 156860 156900 59 + . . scaffold525 GLEAN mRNA 165519 165552 0.279546 - . ID=CGI_10008575; scaffold525 TRF Tandem_Repeat 165519 165552 59 + . . scaffold525 GLEAN mRNA 168400 168436 0.279546 - . ID=CGI_10008575; scaffold525 TRF Tandem_Repeat 168400 168436 74 + . . scaffold525 GLEAN mRNA 172936 173283 0.279546 - . ID=CGI_10008575; scaffold525 WUBlastX LINE_L2 172936 173283 247 - . . scaffold1786 GLEAN mRNA 145154 145196 0.999676 - . ID=CGI_10008580; scaffold1786 TRF Tandem_Repeat 145154 145196 77 + . . scaffold161 GLEAN mRNA 37325 37828 0.722266 + . ID=CGI_10008584; scaffold161 TRF Tandem_Repeat 37325 37828 543 + . . scaffold161 GLEAN mRNA 38793 38829 0.722266 + . ID=CGI_10008584; scaffold161 TRF Tandem_Repeat 38793 38829 74 + . . scaffold161 GLEAN mRNA 43213 43250 0.722266 + . ID=CGI_10008584; scaffold161 TRF Tandem_Repeat 43213 43250 58 + . . scaffold161 GLEAN mRNA 47762 47887 0.722266 + . ID=CGI_10008584; scaffold161 TRF Tandem_Repeat 47762 47887 143 + . . scaffold161 GLEAN mRNA 49515 49615 0.722266 + . ID=CGI_10008584; scaffold161 TRF Tandem_Repeat 49515 49615 109 + . . scaffold161 GLEAN mRNA 58324 58465 0.722266 + . ID=CGI_10008584; scaffold161 TRF Tandem_Repeat 58324 58465 223 + . . scaffold161 GLEAN mRNA 69343 69670 0.998916 + . ID=CGI_10008585; scaffold161 TRF Tandem_Repeat 69343 69670 236 + . . scaffold161 GLEAN mRNA 69438 69583 0.998916 + . ID=CGI_10008585; scaffold161 TRF Tandem_Repeat 69438 69583 111 + . . scaffold161 GLEAN mRNA 73139 73185 0.998916 + . ID=CGI_10008585; scaffold161 TRF Tandem_Repeat 73139 73185 94 + . . scaffold161 GLEAN mRNA 98760 98889 0.500316 - . ID=CGI_10008587; scaffold161 TRF Tandem_Repeat 98760 98889 233 + . . scaffold161 GLEAN mRNA 98921 99484 0.500316 - . ID=CGI_10008587; scaffold161 TRF Tandem_Repeat 98921 99484 950 + . . scaffold161 GLEAN mRNA 100283 100590 0.500316 - . ID=CGI_10008587; scaffold161 TRF Tandem_Repeat 100283 100590 249 + . . scaffold161 GLEAN mRNA 100386 100520 0.500316 - . ID=CGI_10008587; scaffold161 TRF Tandem_Repeat 100386 100520 91 + . . scaffold161 GLEAN mRNA 100589 100756 0.500316 - . ID=CGI_10008587; scaffold161 TRF Tandem_Repeat 100589 100756 266 + . . scaffold161 GLEAN mRNA 100913 101027 0.500316 - . ID=CGI_10008587; scaffold161 TRF Tandem_Repeat 100913 101027 88 + . . scaffold161 GLEAN mRNA 110303 111367 0.832376 + . ID=CGI_10008589; scaffold161 WUBlastX LTR_Gypsy 110303 111367 139 + . . scaffold161 GLEAN mRNA 110020 110184 0.832376 + . ID=CGI_10008589; scaffold161 WUBlastX LTR_Gypsy 110020 110184 26 + . . scaffold161 GLEAN mRNA 110495 112582 0.832376 + . ID=CGI_10008589; scaffold161 WUBlastX LTR_DIRS 110495 112582 1405 + . . scaffold161 GLEAN mRNA 112465 112689 0.832376 + . ID=CGI_10008589; scaffold161 WUBlastX LTR_DIRS 112465 112689 133 + . . scaffold161 GLEAN mRNA 187499 188370 0.451001 + . ID=CGI_10008593; scaffold161 TRF Tandem_Repeat 187499 188370 908 + . . scaffold161 GLEAN mRNA 189690 190982 0.451001 + . ID=CGI_10008593; scaffold161 TRF Tandem_Repeat 189690 190982 1726 + . . scaffold43054 GLEAN mRNA 48007 48060 0.989033 + . ID=CGI_10008595; scaffold43054 TRF Tandem_Repeat 48007 48060 69 + . . scaffold43054 GLEAN mRNA 64221 64290 0.67191 - . ID=CGI_10008596; scaffold43054 TRF Tandem_Repeat 64221 64290 140 + . . scaffold43054 GLEAN mRNA 64598 64657 0.67191 - . ID=CGI_10008596; scaffold43054 TRF Tandem_Repeat 64598 64657 113 + . . scaffold43054 GLEAN mRNA 70949 71257 0.990615 + . ID=CGI_10008597; scaffold43054 WUBlastX LINE_RTE-X 70949 71257 89 - . . scaffold43054 GLEAN mRNA 70889 71248 0.990615 + . ID=CGI_10008597; scaffold43054 WUBlastX LINE_RTE-X 70889 71248 65 - . . scaffold43054 GLEAN mRNA 70823 71251 0.990615 + . ID=CGI_10008597; scaffold43054 WUBlastX LINE_RTE-X 70823 71251 40 - . . scaffold43054 GLEAN mRNA 123218 123278 0.934576 - . ID=CGI_10008599; scaffold43054 TRF Tandem_Repeat 123218 123278 122 + . . scaffold43054 GLEAN mRNA 125092 125189 0.934576 - . ID=CGI_10008599; scaffold43054 TRF Tandem_Repeat 125092 125189 105 + . . scaffold43054 GLEAN mRNA 126709 127079 0.934576 - . ID=CGI_10008599; scaffold43054 TRF Tandem_Repeat 126709 127079 627 + . . scaffold743 GLEAN mRNA 1219 1546 1 + . ID=CGI_10008608; scaffold743 TRF Tandem_Repeat 1219 1546 452 + . . scaffold743 GLEAN mRNA 1219 1539 1 + . ID=CGI_10008608; scaffold743 TRF Tandem_Repeat 1219 1539 459 + . . scaffold743 GLEAN mRNA 1525 1723 1 + . ID=CGI_10008608; scaffold743 TRF Tandem_Repeat 1525 1723 170 + . . scaffold743 GLEAN mRNA 7808 7937 0.988021 - . ID=CGI_10008609; scaffold743 TRF Tandem_Repeat 7808 7937 224 + . . scaffold743 GLEAN mRNA 7938 8476 0.988021 - . ID=CGI_10008609; scaffold743 TRF Tandem_Repeat 7938 8476 981 + . . scaffold743 GLEAN mRNA 8477 8637 0.988021 - . ID=CGI_10008609; scaffold743 TRF Tandem_Repeat 8477 8637 268 + . . scaffold743 GLEAN mRNA 8320 9764 0.988021 - . ID=CGI_10008609; scaffold743 TRF Tandem_Repeat 8320 9764 2777 + . . scaffold743 GLEAN mRNA 8638 8798 0.988021 - . ID=CGI_10008609; scaffold743 TRF Tandem_Repeat 8638 8798 277 + . . scaffold743 GLEAN mRNA 8799 8959 0.988021 - . ID=CGI_10008609; scaffold743 TRF Tandem_Repeat 8799 8959 277 + . . scaffold743 GLEAN mRNA 8960 9120 0.988021 - . ID=CGI_10008609; scaffold743 TRF Tandem_Repeat 8960 9120 277 + . . scaffold743 GLEAN mRNA 9121 9281 0.988021 - . ID=CGI_10008609; scaffold743 TRF Tandem_Repeat 9121 9281 277 + . . scaffold743 GLEAN mRNA 9282 9442 0.988021 - . ID=CGI_10008609; scaffold743 TRF Tandem_Repeat 9282 9442 277 + . . scaffold743 GLEAN mRNA 9443 9603 0.988021 - . ID=CGI_10008609; scaffold743 TRF Tandem_Repeat 9443 9603 277 + . . scaffold743 GLEAN mRNA 9604 9774 0.988021 - . ID=CGI_10008609; scaffold743 TRF Tandem_Repeat 9604 9774 301 + . . scaffold743 GLEAN mRNA 16095 16141 0.988021 - . ID=CGI_10008609; scaffold743 TRF Tandem_Repeat 16095 16141 94 + . . scaffold743 GLEAN mRNA 19208 19276 0.50162 + . ID=CGI_10008610; scaffold743 TRF Tandem_Repeat 19208 19276 129 + . . scaffold743 GLEAN mRNA 26701 26730 0.50162 + . ID=CGI_10008610; scaffold743 TRF Tandem_Repeat 26701 26730 60 + . . scaffold743 GLEAN mRNA 26768 26825 0.50162 + . ID=CGI_10008610; scaffold743 TRF Tandem_Repeat 26768 26825 116 + . . scaffold743 GLEAN mRNA 98319 98529 0.449406 + . ID=CGI_10008614; scaffold743 TRF Tandem_Repeat 98319 98529 298 + . . scaffold743 GLEAN mRNA 108226 108909 0.449406 + . ID=CGI_10008614; scaffold743 WUBlastX LINE_Tad1? 108226 108909 66 - . . scaffold743 GLEAN mRNA 108946 109134 0.449406 + . ID=CGI_10008614; scaffold743 WUBlastX LINE_RTE-X 108946 110001 484 + . . scaffold743 GLEAN mRNA 106816 107253 0.449406 + . ID=CGI_10008614; scaffold743 WUBlastX LINE_RTE-X 106816 107253 126 - . . scaffold743 GLEAN mRNA 107835 108218 0.449406 + . ID=CGI_10008614; scaffold743 WUBlastX LINE_RTE-X 107835 108218 87 - . . scaffold743 GLEAN mRNA 107342 107767 0.449406 + . ID=CGI_10008614; scaffold743 WUBlastX LINE_RTE-X 107342 107767 221 - . . scaffold743 GLEAN mRNA 107204 107767 0.449406 + . ID=CGI_10008614; scaffold743 WUBlastX LINE_RTE-X 107204 107767 69 - . . scaffold743 GLEAN mRNA 108840 108926 0.449406 + . ID=CGI_10008614; scaffold743 WUBlastX LINE_RTE-X 108840 108926 63 + . . scaffold743 GLEAN mRNA 108867 108947 0.449406 + . ID=CGI_10008614; scaffold743 WUBlastX LINE_RTE-BovB 108867 108947 25 + . . scaffold743 GLEAN mRNA 108940 109134 0.449406 + . ID=CGI_10008614; scaffold743 WUBlastX LINE_RTE-X 108940 110628 304 + . . scaffold743 GLEAN mRNA 107775 108152 0.449406 + . ID=CGI_10008614; scaffold743 WUBlastX LINE_RTE-X 107775 108152 203 - . . scaffold743 GLEAN mRNA 108211 108702 0.449406 + . ID=CGI_10008614; scaffold743 WUBlastX LINE_RTE-X 108211 108702 351 - . . scaffold743 GLEAN mRNA 210546 210758 0.715666 - . ID=CGI_10008616; scaffold743 WUBlastX DNA_Harbinger 210546 210758 81 - . . scaffold743 GLEAN mRNA 208832 209416 0.715666 - . ID=CGI_10008616; scaffold743 WUBlastX DNA_Harbinger 208832 209416 302 + . . scaffold743 GLEAN mRNA 209430 209765 0.715666 - . ID=CGI_10008616; scaffold743 WUBlastX DNA_Harbinger 209430 209765 85 + . . scaffold1377 GLEAN mRNA 5107 5171 0.99195 + . ID=CGI_10008617; scaffold1377 TRF Tandem_Repeat 5107 5171 130 + . . scaffold1377 GLEAN mRNA 13524 13578 0.99195 + . ID=CGI_10008617; scaffold1377 TRF Tandem_Repeat 13524 13578 65 + . . scaffold1377 GLEAN mRNA 13522 13575 0.99195 + . ID=CGI_10008617; scaffold1377 TRF Tandem_Repeat 13522 13575 67 + . . scaffold1377 GLEAN mRNA 14571 14611 0.99195 + . ID=CGI_10008617; scaffold1377 TRF Tandem_Repeat 14571 14611 82 + . . scaffold1377 GLEAN mRNA 14733 14794 0.99195 + . ID=CGI_10008617; scaffold1377 TRF Tandem_Repeat 14733 14794 97 + . . scaffold1377 GLEAN mRNA 7970 8221 0.99195 + . ID=CGI_10008617; scaffold1377 WUBlastX LTR_DIRS 7970 8221 98 - . . scaffold1377 GLEAN mRNA 8057 8824 0.99195 + . ID=CGI_10008617; scaffold1377 WUBlastX LTR_DIRS 8057 8824 35 - . . scaffold1377 GLEAN mRNA 7737 7973 0.99195 + . ID=CGI_10008617; scaffold1377 WUBlastX LTR_DIRS 7737 7973 24 - . . scaffold1377 GLEAN mRNA 18488 18532 0.99195 + . ID=CGI_10008617; scaffold1377 TRF Tandem_Repeat 18488 18532 54 + . . scaffold1377 GLEAN mRNA 106879 107070 0.962665 + . ID=CGI_10008620; scaffold1377 WUBlastX LINE_L1 106366 107070 139 + . . scaffold1377 GLEAN mRNA 106879 107109 0.962665 + . ID=CGI_10008620; scaffold1377 WUBlastX LINE_L1 106231 107109 36 + . . scaffold1377 GLEAN mRNA 127636 127800 0.64366 + . ID=CGI_10008621; scaffold1377 WUBlastX DNA_Crypton 127636 127800 64 + . . scaffold1377 GLEAN mRNA 127781 128170 0.64366 + . ID=CGI_10008621; scaffold1377 WUBlastX DNA_Crypton 127781 128170 138 + . . scaffold1377 GLEAN mRNA 128161 128331 0.64366 + . ID=CGI_10008621; scaffold1377 WUBlastX DNA_Crypton 128161 128331 78 + . . scaffold1377 GLEAN mRNA 135413 135445 0.64366 + . ID=CGI_10008621; scaffold1377 TRF Tandem_Repeat 135413 135445 66 + . . scaffold1377 GLEAN mRNA 146354 146531 0.64366 + . ID=CGI_10008621; scaffold1377 TRF Tandem_Repeat 146354 146531 80 + . . scaffold1377 GLEAN mRNA 148295 148423 0.64366 + . ID=CGI_10008621; scaffold1377 TRF Tandem_Repeat 148295 148423 77 + . . scaffold1377 GLEAN mRNA 150089 150118 0.64366 + . ID=CGI_10008621; scaffold1377 WUBlastX LTR_Gypsy 150089 150118 24 + . . scaffold1377 GLEAN mRNA 149943 150026 0.64366 + . ID=CGI_10008621; scaffold1377 WUBlastX LTR_Gypsy 149943 150026 21 + . . scaffold1377 GLEAN mRNA 148773 149675 0.64366 + . ID=CGI_10008621; scaffold1377 WUBlastX LTR_Gypsy 148773 149675 244 + . . scaffold1377 GLEAN mRNA 149001 149828 0.64366 + . ID=CGI_10008621; scaffold1377 WUBlastX LTR_Gypsy 149001 149828 232 + . . scaffold1377 GLEAN mRNA 150098 150220 0.64366 + . ID=CGI_10008621; scaffold1377 WUBlastX LTR_Gypsy 150098 150220 27 + . . scaffold1377 GLEAN mRNA 172994 173000 0.999572 + . ID=CGI_10008622; scaffold1377 WUBlastX LINE_L1 172764 173000 30 + . . scaffold1377 GLEAN mRNA 172994 173335 0.999572 + . ID=CGI_10008622; scaffold1377 WUBlastX LINE_L1 172991 173335 80 + . . scaffold1377 GLEAN mRNA 186566 186871 0.456444 + . ID=CGI_10008623; scaffold1377 WUBlastX DNA_IS4EU 186566 186871 96 + . . scaffold1377 GLEAN mRNA 185293 185904 0.456444 + . ID=CGI_10008623; scaffold1377 WUBlastX DNA_Kolobok-IS4 185293 185904 259 - . . scaffold1377 GLEAN mRNA 185897 186310 0.456444 + . ID=CGI_10008623; scaffold1377 WUBlastX DNA_Kolobok-IS4 185897 186310 48 - . . scaffold1377 GLEAN mRNA 186856 187200 0.456444 + . ID=CGI_10008623; scaffold1377 WUBlastX DNA_IS4EU 186856 187200 124 + . . scaffold1377 GLEAN mRNA 186422 186883 0.456444 + . ID=CGI_10008623; scaffold1377 WUBlastX DNA_IS4EU 186422 186883 53 + . . scaffold1377 GLEAN mRNA 183339 183527 0.456444 + . ID=CGI_10008623; scaffold1377 WUBlastX DNA_IS4EU 183339 183527 47 + . . scaffold1377 GLEAN mRNA 183939 184094 0.456444 + . ID=CGI_10008623; scaffold1377 WUBlastX DNA_IS4EU 183939 184094 33 + . . scaffold1377 GLEAN mRNA 201851 201879 0.323307 - . ID=CGI_10008624; scaffold1377 TRF Tandem_Repeat 201851 201879 58 + . . scaffold1377 GLEAN mRNA 204850 204899 0.323307 - . ID=CGI_10008624; scaffold1377 TRF Tandem_Repeat 204850 204899 57 + . . scaffold1377 GLEAN mRNA 206166 206225 0.323307 - . ID=CGI_10008624; scaffold1377 TRF Tandem_Repeat 206166 206225 75 + . . scaffold43064 GLEAN mRNA 4069 4115 0.292417 + . ID=CGI_10008625; scaffold43064 TRF Tandem_Repeat 4069 4115 94 + . . scaffold43064 GLEAN mRNA 19461 20441 0.292417 + . ID=CGI_10008625; scaffold43064 WUBlastX LINE_RTE-X 19461 20441 440 - . . scaffold43064 GLEAN mRNA 21283 21540 0.292417 + . ID=CGI_10008625; scaffold43064 WUBlastX LINE_RTE-X 21283 21540 35 - . . scaffold43064 GLEAN mRNA 21277 21408 0.292417 + . ID=CGI_10008625; scaffold43064 WUBlastX LINE_RTE-X 21277 21408 55 - . . scaffold43064 GLEAN mRNA 21274 21432 0.292417 + . ID=CGI_10008625; scaffold43064 WUBlastX LINE_RTE-BovB 21274 21432 42 - . . scaffold43064 GLEAN mRNA 26247 26840 0.633506 - . ID=CGI_10008626; scaffold43064 TRF Tandem_Repeat 26247 26840 299 + . . scaffold43064 GLEAN mRNA 26606 26840 0.633506 - . ID=CGI_10008626; scaffold43064 TRF Tandem_Repeat 26606 26840 163 + . . scaffold43064 GLEAN mRNA 26771 26841 0.633506 - . ID=CGI_10008626; scaffold43064 TRF Tandem_Repeat 26771 26841 79 + . . scaffold43064 GLEAN mRNA 54803 54856 0.808133 - . ID=CGI_10008627; scaffold43064 TRF Tandem_Repeat 54803 54856 108 + . . scaffold43064 GLEAN mRNA 51393 51764 0.808133 - . ID=CGI_10008627; scaffold43064 WUBlastX DNA_Harbinger 51393 51764 98 - . . scaffold43064 GLEAN mRNA 53078 53473 0.808133 - . ID=CGI_10008627; scaffold43064 WUBlastX LTR_Gypsy 53078 53473 86 + . . scaffold43064 GLEAN mRNA 86459 86775 0.866356 - . ID=CGI_10008628; scaffold43064 TRF Tandem_Repeat 86459 86775 280 + . . scaffold43064 GLEAN mRNA 98284 98336 0.866356 - . ID=CGI_10008628; scaffold43064 TRF Tandem_Repeat 98284 98336 106 + . . scaffold43064 GLEAN mRNA 147725 147804 0.996279 - . ID=CGI_10008631; scaffold43064 TRF Tandem_Repeat 147725 147804 65 + . . scaffold43064 GLEAN mRNA 147722 147791 0.996279 - . ID=CGI_10008631; scaffold43064 TRF Tandem_Repeat 147722 147791 54 + . . scaffold43064 GLEAN mRNA 154173 154210 0.999992 + . ID=CGI_10008632; scaffold43064 TRF Tandem_Repeat 154173 154210 76 + . . scaffold43064 GLEAN mRNA 155413 155712 0.999992 + . ID=CGI_10008632; scaffold43064 TRF Tandem_Repeat 155413 155712 198 + . . scaffold43064 GLEAN mRNA 155413 155712 0.999992 + . ID=CGI_10008632; scaffold43064 TRF Tandem_Repeat 155413 155712 221 + . . scaffold43064 GLEAN mRNA 155444 155712 0.999992 + . ID=CGI_10008632; scaffold43064 TRF Tandem_Repeat 155444 155712 335 + . . scaffold43064 GLEAN mRNA 167923 168012 0.499838 + . ID=CGI_10008633; scaffold43064 TRF Tandem_Repeat 167923 168012 85 + . . scaffold43064 GLEAN mRNA 167925 168026 0.499838 + . ID=CGI_10008633; scaffold43064 TRF Tandem_Repeat 167925 168026 80 + . . scaffold43064 GLEAN mRNA 169290 169431 0.499838 + . ID=CGI_10008633; scaffold43064 TRF Tandem_Repeat 169290 169431 92 + . . scaffold43064 GLEAN mRNA 167524 167709 0.499838 + . ID=CGI_10008633; scaffold43064 WUBlastX DNA_TcMar-Tc1 167524 167709 86 - . . scaffold43064 GLEAN mRNA 167509 167784 0.499838 + . ID=CGI_10008633; scaffold43064 WUBlastX DNA_TcMar-Tc1 167509 167784 40 - . . scaffold43064 GLEAN mRNA 180640 180681 0.499838 + . ID=CGI_10008633; scaffold43064 TRF Tandem_Repeat 180640 180681 77 + . . scaffold43064 GLEAN mRNA 184473 184664 0.499838 + . ID=CGI_10008633; scaffold43064 WUBlastX LINE_L1-Tx1 184473 184664 24 + . . scaffold43064 GLEAN mRNA 183814 184188 0.499838 + . ID=CGI_10008633; scaffold43064 WUBlastX LINE_L1-Tx1 183814 184188 76 + . . scaffold1480 GLEAN mRNA 77249 77285 0.999102 - . ID=CGI_10008636; scaffold1480 WUBlastX LINE_R2 77157 77285 91 - . . scaffold1480 GLEAN mRNA 77348 77470 0.999102 - . ID=CGI_10008636; scaffold1480 WUBlastX LINE_R2 77348 77470 29 - . . scaffold1480 GLEAN mRNA 77303 77470 0.999102 - . ID=CGI_10008636; scaffold1480 WUBlastX LINE_R2 77303 77470 27 - . . scaffold1480 GLEAN mRNA 134233 134280 0.535981 - . ID=CGI_10008637; scaffold1480 TRF Tandem_Repeat 134233 134280 60 + . . scaffold1480 GLEAN mRNA 134311 136268 0.535981 - . ID=CGI_10008637; scaffold1480 TRF Tandem_Repeat 134311 136268 3020 + . . scaffold1480 GLEAN mRNA 137670 138692 0.535981 - . ID=CGI_10008637; scaffold1480 WUBlastX LINE_R2 137670 138692 160 - . . scaffold1480 GLEAN mRNA 137673 138953 0.535981 - . ID=CGI_10008637; scaffold1480 WUBlastX LINE_R2 137673 139004 108 - . . scaffold1480 GLEAN mRNA 137673 138350 0.535981 - . ID=CGI_10008637; scaffold1480 WUBlastX LINE_R2 137673 138350 203 - . . scaffold1480 GLEAN mRNA 137670 138191 0.535981 - . ID=CGI_10008637; scaffold1480 WUBlastX LINE_R2 137670 138191 271 - . . scaffold1480 GLEAN mRNA 157844 159706 0.693127 - . ID=CGI_10008638; scaffold1480 WUBlastX LINE_L1 157844 159706 244 - . . scaffold1480 GLEAN mRNA 157646 159403 0.693127 - . ID=CGI_10008638; scaffold1480 WUBlastX LINE_R2 157646 159403 898 - . . scaffold1480 GLEAN mRNA 157083 157646 0.693127 - . ID=CGI_10008638; scaffold1480 WUBlastX LINE_R2 157083 157646 288 - . . scaffold1480 GLEAN mRNA 159699 160028 0.693127 - . ID=CGI_10008638; scaffold1480 WUBlastX LINE_R2 159699 160028 144 - . . scaffold1480 GLEAN mRNA 160162 160215 0.693127 - . ID=CGI_10008638; scaffold1480 WUBlastX LINE_R1 160162 160215 20 - . . scaffold1480 GLEAN mRNA 160240 160434 0.693127 - . ID=CGI_10008638; scaffold1480 WUBlastX LINE_R2 160240 160434 27 - . . scaffold1480 GLEAN mRNA 156975 157637 0.693127 - . ID=CGI_10008638; scaffold1480 WUBlastX LINE_R2 156975 157637 95 - . . scaffold1480 GLEAN mRNA 187795 188206 0.719191 + . ID=CGI_10008641; scaffold1480 TRF Tandem_Repeat 187795 188206 397 + . . scaffold1480 GLEAN mRNA 199341 199468 0.748853 + . ID=CGI_10008642; scaffold1480 TRF Tandem_Repeat 199341 199468 96 + . . scaffold1480 GLEAN mRNA 201728 201766 0.748853 + . ID=CGI_10008642; scaffold1480 TRF Tandem_Repeat 201728 201766 78 + . . scaffold1480 GLEAN mRNA 204514 204541 0.748853 + . ID=CGI_10008642; scaffold1480 TRF Tandem_Repeat 204514 204541 56 + . . scaffold1480 GLEAN mRNA 211427 211499 0.748853 + . ID=CGI_10008642; scaffold1480 TRF Tandem_Repeat 211427 211499 67 + . . scaffold1318 GLEAN mRNA 47841 48137 0.328272 + . ID=CGI_10008644; scaffold1318 WUBlastX DNA_TcMar-Tc1 47841 48137 75 + . . scaffold1318 GLEAN mRNA 48151 48738 0.328272 + . ID=CGI_10008644; scaffold1318 WUBlastX DNA_TcMar-Tc1 48151 48738 81 + . . scaffold1318 GLEAN mRNA 48130 48585 0.328272 + . ID=CGI_10008644; scaffold1318 WUBlastX DNA_TcMar-Tc1 48130 48585 205 + . . scaffold1318 GLEAN mRNA 47787 47987 0.328272 + . ID=CGI_10008644; scaffold1318 WUBlastX DNA_TcMar-Tc1 47787 47987 27 + . . scaffold1318 GLEAN mRNA 48585 48773 0.328272 + . ID=CGI_10008644; scaffold1318 WUBlastX DNA_TcMar-Tc1 48585 48773 72 + . . scaffold1318 GLEAN mRNA 73040 73097 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 73040 73097 66 + . . scaffold1318 GLEAN mRNA 73042 73093 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 73042 73093 63 + . . scaffold1318 GLEAN mRNA 80689 80755 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 80689 80755 71 + . . scaffold1318 GLEAN mRNA 83117 83153 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 83117 83153 74 + . . scaffold1318 GLEAN mRNA 90020 90069 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 90020 90069 100 + . . scaffold1318 GLEAN mRNA 91530 91570 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 91530 91570 82 + . . scaffold1318 GLEAN mRNA 91644 91685 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 91644 91685 66 + . . scaffold1318 GLEAN mRNA 93593 94522 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 93593 94522 1065 + . . scaffold1318 GLEAN mRNA 93593 94522 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 93593 94522 1179 + . . scaffold1318 GLEAN mRNA 93614 94522 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 93614 94522 1135 + . . scaffold1318 GLEAN mRNA 94733 94780 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 94733 94780 78 + . . scaffold1318 GLEAN mRNA 95068 95106 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 95068 95106 78 + . . scaffold1318 GLEAN mRNA 95508 95548 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 95508 95548 82 + . . scaffold1318 GLEAN mRNA 95878 95939 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 95878 95939 115 + . . scaffold1318 GLEAN mRNA 96248 96289 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 96248 96289 68 + . . scaffold1318 GLEAN mRNA 96753 96803 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 96753 96803 102 + . . scaffold1318 GLEAN mRNA 137870 137897 0.196685 + . ID=CGI_10008647; scaffold1318 TRF Tandem_Repeat 137870 137897 56 + . . scaffold1318 GLEAN mRNA 137897 137942 0.196685 + . ID=CGI_10008647; scaffold1318 TRF Tandem_Repeat 137897 137942 92 + . . scaffold817 GLEAN mRNA 47291 47389 0.999225 - . ID=CGI_10008654; scaffold817 WUBlastX DNA_MuDR 47291 47389 42 - . . scaffold817 GLEAN mRNA 47536 47769 0.999225 - . ID=CGI_10008654; scaffold817 WUBlastX DNA_MuDR 47536 47769 33 - . . scaffold817 GLEAN mRNA 47880 48005 0.999225 - . ID=CGI_10008654; scaffold817 WUBlastX DNA_MuDR 47880 48005 59 - . . scaffold817 GLEAN mRNA 47596 47766 0.999225 - . ID=CGI_10008654; scaffold817 WUBlastX DNA_MuDR 47596 47766 54 - . . scaffold817 GLEAN mRNA 47886 48044 0.999225 - . ID=CGI_10008654; scaffold817 WUBlastX DNA_MuDR 47886 48044 54 - . . scaffold817 GLEAN mRNA 50183 50320 0.712526 - . ID=CGI_10008655; scaffold817 WUBlastX DNA_MuDR 50183 50365 99 - . . scaffold817 GLEAN mRNA 54990 56162 0.983542 - . ID=CGI_10008657; scaffold817 WUBlastX LTR_Copia 54990 56162 120 - . . scaffold817 GLEAN mRNA 55167 56351 0.983542 - . ID=CGI_10008657; scaffold817 WUBlastX LTR_Gypsy-Cigr 55167 56351 798 - . . scaffold817 GLEAN mRNA 66190 66241 0.983542 - . ID=CGI_10008657; scaffold817 TRF Tandem_Repeat 66190 66241 104 + . . scaffold817 GLEAN mRNA 67852 68100 0.983542 - . ID=CGI_10008657; scaffold817 WUBlastX DNA_Kolobok 67852 68100 113 - . . scaffold817 GLEAN mRNA 152367 152407 0.988089 - . ID=CGI_10008666; scaffold817 TRF Tandem_Repeat 152367 152407 82 + . . scaffold43066 GLEAN mRNA 5403 5546 0.877303 - . ID=CGI_10008676; scaffold43066 TRF Tandem_Repeat 5403 5546 100 + . . scaffold43066 GLEAN mRNA 5559 5662 0.877303 - . ID=CGI_10008676; scaffold43066 TRF Tandem_Repeat 5559 5662 120 + . . scaffold43066 GLEAN mRNA 5403 5662 0.877303 - . ID=CGI_10008676; scaffold43066 TRF Tandem_Repeat 5403 5662 161 + . . scaffold43066 GLEAN mRNA 16422 16453 0.877456 - . ID=CGI_10008677; scaffold43066 TRF Tandem_Repeat 16422 16453 55 + . . scaffold43066 GLEAN mRNA 19702 19745 0.877456 - . ID=CGI_10008677; scaffold43066 TRF Tandem_Repeat 19702 19745 56 + . . scaffold43066 GLEAN mRNA 19921 19971 0.877456 - . ID=CGI_10008677; scaffold43066 TRF Tandem_Repeat 19921 19971 102 + . . scaffold43066 GLEAN mRNA 21472 21517 0.877456 - . ID=CGI_10008677; scaffold43066 TRF Tandem_Repeat 21472 21517 92 + . . scaffold43066 GLEAN mRNA 26399 27087 0.862891 - . ID=CGI_10008678; scaffold43066 TRF Tandem_Repeat 26399 27087 804 + . . scaffold43066 GLEAN mRNA 108423 108449 0.870281 - . ID=CGI_10008679; scaffold43066 TRF Tandem_Repeat 108423 108449 54 + . . scaffold43066 GLEAN mRNA 148200 148225 1 - . ID=CGI_10008681; scaffold43066 TRF Tandem_Repeat 148200 148225 52 + . . scaffold43066 GLEAN mRNA 148509 148535 1 - . ID=CGI_10008681; scaffold43066 TRF Tandem_Repeat 148509 148535 54 + . . scaffold43066 GLEAN mRNA 157208 157242 1 - . ID=CGI_10008681; scaffold43066 TRF Tandem_Repeat 157208 157242 70 + . . scaffold43066 GLEAN mRNA 203418 203753 0.999669 + . ID=CGI_10008684; scaffold43066 TRF Tandem_Repeat 203418 203753 559 + . . scaffold43066 GLEAN mRNA 212757 213220 0.999669 + . ID=CGI_10008684; scaffold43066 TRF Tandem_Repeat 212757 213220 603 + . . scaffold43072 GLEAN mRNA 7139 7199 1 - . ID=CGI_10008695; scaffold43072 TRF Tandem_Repeat 7139 7199 50 + . . scaffold43072 GLEAN mRNA 8503 8537 1 - . ID=CGI_10008695; scaffold43072 TRF Tandem_Repeat 8503 8537 70 + . . scaffold43072 GLEAN mRNA 14326 14530 1 - . ID=CGI_10008695; scaffold43072 TRF Tandem_Repeat 14326 14530 311 + . . scaffold43072 GLEAN mRNA 25931 25991 0.695082 - . ID=CGI_10008697; scaffold43072 TRF Tandem_Repeat 25931 25991 63 + . . scaffold43072 GLEAN mRNA 24474 24593 0.695082 - . ID=CGI_10008697; scaffold43072 WUBlastX LTR_Gypsy 24474 24593 45 - . . scaffold43072 GLEAN mRNA 33347 33391 0.695082 - . ID=CGI_10008697; scaffold43072 TRF Tandem_Repeat 33347 33391 90 + . . scaffold43072 GLEAN mRNA 45966 46005 0.695082 - . ID=CGI_10008697; scaffold43072 TRF Tandem_Repeat 45966 46005 80 + . . scaffold43072 GLEAN mRNA 50307 50365 0.695082 - . ID=CGI_10008697; scaffold43072 TRF Tandem_Repeat 50307 50365 86 + . . scaffold43072 GLEAN mRNA 50959 51013 0.695082 - . ID=CGI_10008697; scaffold43072 TRF Tandem_Repeat 50959 51013 110 + . . scaffold43072 GLEAN mRNA 100804 100980 0.999598 + . ID=CGI_10008698; scaffold43072 TRF Tandem_Repeat 100804 100980 183 + . . scaffold43072 GLEAN mRNA 100813 100980 0.999598 + . ID=CGI_10008698; scaffold43072 TRF Tandem_Repeat 100813 100980 156 + . . scaffold43072 GLEAN mRNA 101432 101960 0.999598 + . ID=CGI_10008698; scaffold43072 TRF Tandem_Repeat 101432 101960 476 + . . scaffold43072 GLEAN mRNA 101432 101960 0.999598 + . ID=CGI_10008698; scaffold43072 TRF Tandem_Repeat 101432 101960 456 + . . scaffold43072 GLEAN mRNA 112632 112985 0.396359 - . ID=CGI_10008700; scaffold43072 WUBlastX LINE_RTE-X 112632 112985 22 - . . scaffold43072 GLEAN mRNA 112752 113069 0.396359 - . ID=CGI_10008700; scaffold43072 WUBlastX LINE_RTE-X 112752 113069 82 - . . scaffold43072 GLEAN mRNA 116004 116042 0.396359 - . ID=CGI_10008700; scaffold43072 TRF Tandem_Repeat 116004 116042 51 + . . scaffold43072 GLEAN mRNA 121113 121199 0.396359 - . ID=CGI_10008700; scaffold43072 TRF Tandem_Repeat 121113 121199 66 + . . scaffold43072 GLEAN mRNA 121306 121490 0.396359 - . ID=CGI_10008700; scaffold43072 TRF Tandem_Repeat 121306 121490 122 + . . scaffold43072 GLEAN mRNA 121505 121652 0.396359 - . ID=CGI_10008700; scaffold43072 TRF Tandem_Repeat 121505 121652 143 + . . scaffold43072 GLEAN mRNA 125158 125218 0.396359 - . ID=CGI_10008700; scaffold43072 TRF Tandem_Repeat 125158 125218 122 + . . scaffold43072 GLEAN mRNA 153331 153382 0.701716 - . ID=CGI_10008703; scaffold43072 TRF Tandem_Repeat 153331 153382 104 + . . scaffold43072 GLEAN mRNA 180079 180162 0.714416 - . ID=CGI_10008704; scaffold43072 WUBlastX LTR_Gypsy 180079 180162 20 - . . scaffold43072 GLEAN mRNA 181590 181639 0.714416 - . ID=CGI_10008704; scaffold43072 TRF Tandem_Repeat 181590 181639 100 + . . scaffold43072 GLEAN mRNA 180079 180162 0.999307 + . ID=CGI_10008705; scaffold43072 WUBlastX LTR_Gypsy 180079 180162 20 - . . scaffold43072 GLEAN mRNA 181590 181639 0.999307 + . ID=CGI_10008705; scaffold43072 TRF Tandem_Repeat 181590 181639 100 + . . scaffold43072 GLEAN mRNA 190913 191401 0.999933 - . ID=CGI_10008706; scaffold43072 WUBlastX LINE_L1 190913 191401 20 - . . scaffold43072 GLEAN mRNA 195567 195833 1 + . ID=CGI_10008707; scaffold43072 TRF Tandem_Repeat 195567 195833 399 + . . scaffold43072 GLEAN mRNA 211515 211675 1 - . ID=CGI_10008709; scaffold43072 TRF Tandem_Repeat 211515 211675 164 + . . scaffold43072 GLEAN mRNA 211704 211811 1 - . ID=CGI_10008709; scaffold43072 TRF Tandem_Repeat 211704 211811 87 + . . scaffold500 GLEAN mRNA 29872 30228 0.827578 - . ID=CGI_10008712; scaffold500 TRF Tandem_Repeat 29872 30228 210 + . . scaffold500 GLEAN mRNA 30854 31051 0.827578 - . ID=CGI_10008712; scaffold500 TRF Tandem_Repeat 30854 31051 351 + . . scaffold500 GLEAN mRNA 44788 44819 0.999597 + . ID=CGI_10008713; scaffold500 TRF Tandem_Repeat 44788 44819 55 + . . scaffold500 GLEAN mRNA 77849 78039 0.999013 + . ID=CGI_10008715; scaffold500 TRF Tandem_Repeat 77849 78039 142 + . . scaffold500 GLEAN mRNA 155086 155160 0.9993 - . ID=CGI_10008718; scaffold500 TRF Tandem_Repeat 155086 155160 123 + . . scaffold500 GLEAN mRNA 214751 214806 0.999989 - . ID=CGI_10008722; scaffold500 TRF Tandem_Repeat 214751 214806 105 + . . scaffold1891 GLEAN mRNA 21162 21268 0.693936 - . ID=CGI_10008725; scaffold1891 TRF Tandem_Repeat 21162 21268 51 + . . scaffold1891 GLEAN mRNA 21301 21379 0.693936 - . ID=CGI_10008725; scaffold1891 TRF Tandem_Repeat 21301 21379 59 + . . scaffold1891 GLEAN mRNA 23956 23997 0.693936 - . ID=CGI_10008725; scaffold1891 TRF Tandem_Repeat 23956 23997 84 + . . scaffold1891 GLEAN mRNA 38993 39018 0.693936 - . ID=CGI_10008725; scaffold1891 TRF Tandem_Repeat 38993 39018 52 + . . scaffold1891 GLEAN mRNA 66509 66556 0.855644 - . ID=CGI_10008729; scaffold1891 TRF Tandem_Repeat 66509 66556 60 + . . scaffold1891 GLEAN mRNA 66509 66556 1 + . ID=CGI_10008730; scaffold1891 TRF Tandem_Repeat 66509 66556 60 + . . scaffold1891 GLEAN mRNA 101558 101884 0.647502 + . ID=CGI_10008734; scaffold1891 WUBlastX DNA_Crypton 101558 101884 44 - . . scaffold1891 GLEAN mRNA 128496 128545 0.378664 - . ID=CGI_10008736; scaffold1891 TRF Tandem_Repeat 128496 128545 79 + . . scaffold1891 GLEAN mRNA 137682 137707 0.499706 - . ID=CGI_10008737; scaffold1891 TRF Tandem_Repeat 137682 137707 52 + . . scaffold1891 GLEAN mRNA 139788 139880 0.499706 - . ID=CGI_10008737; scaffold1891 TRF Tandem_Repeat 139788 139880 71 + . . scaffold1891 GLEAN mRNA 142896 142939 0.499706 - . ID=CGI_10008737; scaffold1891 TRF Tandem_Repeat 142896 142939 88 + . . scaffold1891 GLEAN mRNA 143386 143437 0.499706 - . ID=CGI_10008737; scaffold1891 TRF Tandem_Repeat 143386 143437 104 + . . scaffold1891 GLEAN mRNA 147032 147193 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 147032 147193 58 + . . scaffold1891 GLEAN mRNA 151332 151397 0.499706 - . ID=CGI_10008737; scaffold1891 TRF Tandem_Repeat 151332 151397 132 + . . scaffold1891 GLEAN mRNA 155345 155399 0.499706 - . ID=CGI_10008737; scaffold1891 TRF Tandem_Repeat 155345 155399 110 + . . scaffold1891 GLEAN mRNA 157020 157079 0.499706 - . ID=CGI_10008737; scaffold1891 TRF Tandem_Repeat 157020 157079 120 + . . scaffold1891 GLEAN mRNA 157705 157736 0.499706 - . ID=CGI_10008737; scaffold1891 TRF Tandem_Repeat 157705 157736 64 + . . scaffold1891 GLEAN mRNA 151086 151211 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 151086 151211 29 - . . scaffold1891 GLEAN mRNA 152059 152469 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 152059 152469 88 - . . scaffold1891 GLEAN mRNA 150618 150716 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 150618 150716 27 - . . scaffold1891 GLEAN mRNA 150850 151023 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 150850 151023 123 - . . scaffold1891 GLEAN mRNA 151432 151554 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 151432 151554 75 - . . scaffold1891 GLEAN mRNA 151116 151211 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 151116 151211 46 - . . scaffold1891 GLEAN mRNA 151411 151569 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 151411 151569 37 - . . scaffold1891 GLEAN mRNA 152089 152433 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 152089 152433 129 - . . scaffold1891 GLEAN mRNA 151134 151250 0.499706 - . ID=CGI_10008737; scaffold1891 WUBlastX DNA_Harbinger 151134 151250 47 - . . scaffold560 GLEAN mRNA 8485 8631 0.999375 - . ID=CGI_10008749; scaffold560 TRF Tandem_Repeat 8485 8631 125 + . . scaffold560 GLEAN mRNA 8630 8816 0.999375 - . ID=CGI_10008749; scaffold560 TRF Tandem_Repeat 8630 8816 178 + . . scaffold560 GLEAN mRNA 8904 8990 0.999375 - . ID=CGI_10008749; scaffold560 TRF Tandem_Repeat 8904 8990 131 + . . scaffold560 GLEAN mRNA 10030 10081 0.999375 - . ID=CGI_10008749; scaffold560 TRF Tandem_Repeat 10030 10081 104 + . . scaffold560 GLEAN mRNA 13291 13355 0.999375 - . ID=CGI_10008749; scaffold560 TRF Tandem_Repeat 13291 13355 76 + . . scaffold560 GLEAN mRNA 13910 14380 0.999375 - . ID=CGI_10008749; scaffold560 TRF Tandem_Repeat 13910 14380 667 + . . scaffold560 GLEAN mRNA 7513 8442 0.999375 - . ID=CGI_10008749; scaffold560 WUBlastX LTR_DIRS 7513 8442 88 - . . scaffold560 GLEAN mRNA 8485 8631 1 + . ID=CGI_10008750; scaffold560 TRF Tandem_Repeat 8485 8631 125 + . . scaffold560 GLEAN mRNA 8630 8816 1 + . ID=CGI_10008750; scaffold560 TRF Tandem_Repeat 8630 8816 178 + . . scaffold560 GLEAN mRNA 8904 8990 1 + . ID=CGI_10008750; scaffold560 TRF Tandem_Repeat 8904 8990 131 + . . scaffold560 GLEAN mRNA 10030 10081 1 + . ID=CGI_10008750; scaffold560 TRF Tandem_Repeat 10030 10081 104 + . . scaffold560 GLEAN mRNA 13291 13355 1 + . ID=CGI_10008750; scaffold560 TRF Tandem_Repeat 13291 13355 76 + . . scaffold560 GLEAN mRNA 13910 14380 1 + . ID=CGI_10008750; scaffold560 TRF Tandem_Repeat 13910 14380 667 + . . scaffold560 GLEAN mRNA 7513 8442 1 + . ID=CGI_10008750; scaffold560 WUBlastX LTR_DIRS 7513 8442 88 - . . scaffold560 GLEAN mRNA 145002 145124 0.941337 + . ID=CGI_10008753; scaffold560 TRF Tandem_Repeat 145002 145124 77 + . . scaffold560 GLEAN mRNA 139815 139979 0.941337 + . ID=CGI_10008753; scaffold560 WUBlastX LINE_RTE-X 139815 139979 93 - . . scaffold560 GLEAN mRNA 139806 140036 0.941337 + . ID=CGI_10008753; scaffold560 WUBlastX LINE_RTE-X 139806 140036 89 - . . scaffold560 GLEAN mRNA 139743 139967 0.941337 + . ID=CGI_10008753; scaffold560 WUBlastX LINE_RTE-X 139743 139967 84 - . . scaffold560 GLEAN mRNA 158391 158495 0.941337 + . ID=CGI_10008753; scaffold560 TRF Tandem_Repeat 158391 158495 112 + . . scaffold560 GLEAN mRNA 159640 159744 0.941337 + . ID=CGI_10008753; scaffold560 TRF Tandem_Repeat 159640 159744 103 + . . scaffold560 GLEAN mRNA 168967 169150 0.999922 - . ID=CGI_10008754; scaffold560 TRF Tandem_Repeat 168967 169150 242 + . . scaffold560 GLEAN mRNA 193786 193825 0.40521 - . ID=CGI_10008757; scaffold560 TRF Tandem_Repeat 193786 193825 53 + . . scaffold560 GLEAN mRNA 193789 193825 0.40521 - . ID=CGI_10008757; scaffold560 TRF Tandem_Repeat 193789 193825 65 + . . scaffold560 GLEAN mRNA 199361 199459 0.40521 - . ID=CGI_10008757; scaffold560 TRF Tandem_Repeat 199361 199459 118 + . . scaffold560 GLEAN mRNA 211709 211751 0.999892 - . ID=CGI_10008758; scaffold560 TRF Tandem_Repeat 211709 211751 59 + . . scaffold560 GLEAN mRNA 208299 208424 0.999892 - . ID=CGI_10008758; scaffold560 WUBlastX LINE_L1-Tx1 208299 208424 74 + . . scaffold43076 GLEAN mRNA 68281 68505 0.997439 + . ID=CGI_10008761; scaffold43076 WUBlastX DNA_Kolobok-IS4 68281 68505 55 - . . scaffold43076 GLEAN mRNA 68702 68912 0.997439 + . ID=CGI_10008761; scaffold43076 WUBlastX DNA_Kolobok-IS4 68702 68929 38 - . . scaffold43076 GLEAN mRNA 67645 67869 0.997439 + . ID=CGI_10008761; scaffold43076 WUBlastX DNA_IS4EU 67645 67869 109 + . . scaffold43076 GLEAN mRNA 67403 68029 0.997439 + . ID=CGI_10008761; scaffold43076 WUBlastX DNA_IS4EU 67403 68029 63 + . . scaffold43076 GLEAN mRNA 66512 66685 0.997439 + . ID=CGI_10008761; scaffold43076 WUBlastX DNA_IS4EU 66512 66685 23 + . . scaffold43076 GLEAN mRNA 66578 66685 0.997439 + . ID=CGI_10008761; scaffold43076 WUBlastX DNA_IS4EU 66578 66685 33 + . . scaffold43076 GLEAN mRNA 67612 67824 0.997439 + . ID=CGI_10008761; scaffold43076 WUBlastX DNA_IS4EU 67612 67824 79 + . . scaffold43076 GLEAN mRNA 68308 68583 0.997439 + . ID=CGI_10008761; scaffold43076 WUBlastX DNA_IS4EU 68308 68583 40 - . . scaffold43076 GLEAN mRNA 67645 67827 0.997439 + . ID=CGI_10008761; scaffold43076 WUBlastX DNA_IS4EU 67645 67827 124 + . . scaffold43076 GLEAN mRNA 124379 124456 0.999606 + . ID=CGI_10008765; scaffold43076 WUBlastX DNA_IS4EU 124292 124456 56 + . . scaffold43076 GLEAN mRNA 124647 124808 0.999606 + . ID=CGI_10008765; scaffold43076 WUBlastX DNA_IS4EU 124647 124808 27 + . . scaffold43076 GLEAN mRNA 188460 189044 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 188460 189044 152 - . . scaffold43076 GLEAN mRNA 188919 189314 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 188919 189314 51 - . . scaffold43076 GLEAN mRNA 189596 189658 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 189596 189658 24 - . . scaffold43076 GLEAN mRNA 187942 188436 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 187942 188436 218 - . . scaffold43076 GLEAN mRNA 188451 188933 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 188451 188933 284 - . . scaffold43076 GLEAN mRNA 187757 187885 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Copia 187757 187885 29 - . . scaffold43076 GLEAN mRNA 187822 188442 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 187822 188442 110 - . . scaffold43076 GLEAN mRNA 188919 189164 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX LTR_Gypsy 188919 189164 73 - . . scaffold43076 GLEAN mRNA 181025 181531 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX RC_Helitron 181025 181531 72 - . . scaffold43076 GLEAN mRNA 188460 189044 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy 188460 189044 152 - . . scaffold43076 GLEAN mRNA 188919 189314 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy 188919 189314 51 - . . scaffold43076 GLEAN mRNA 195503 195568 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy-Cigr 195503 195568 25 - . . scaffold43076 GLEAN mRNA 189596 189658 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy 189596 189658 24 - . . scaffold43076 GLEAN mRNA 187942 188436 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy 187942 188436 218 - . . scaffold43076 GLEAN mRNA 188451 188933 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy 188451 188933 284 - . . scaffold43076 GLEAN mRNA 195518 195919 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy 195518 195919 74 - . . scaffold43076 GLEAN mRNA 195880 196272 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy 195880 196272 122 - . . scaffold43076 GLEAN mRNA 187757 187885 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Copia 187757 187885 29 - . . scaffold43076 GLEAN mRNA 187822 188442 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy 187822 188442 110 - . . scaffold43076 GLEAN mRNA 188919 189164 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy 188919 189164 73 - . . scaffold43076 GLEAN mRNA 204224 204299 0.795025 + . ID=CGI_10008770; scaffold43076 TRF Tandem_Repeat 204224 204299 98 + . . scaffold43076 GLEAN mRNA 204224 204299 0.795025 + . ID=CGI_10008770; scaffold43076 TRF Tandem_Repeat 204224 204299 98 + . . scaffold43076 GLEAN mRNA 198141 198203 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy 198141 198203 24 - . . scaffold43076 GLEAN mRNA 195955 196809 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy-Cigr 195955 196809 453 - . . scaffold43076 GLEAN mRNA 196057 196986 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Gypsy 196057 196986 110 - . . scaffold110 GLEAN mRNA 7683 7860 0.447313 + . ID=CGI_10008773; scaffold110 TRF Tandem_Repeat 7683 7860 287 + . . scaffold110 GLEAN mRNA 27904 27991 0.790606 - . ID=CGI_10008774; scaffold110 TRF Tandem_Repeat 27904 27991 167 + . . scaffold110 GLEAN mRNA 29217 29254 0.790606 - . ID=CGI_10008774; scaffold110 TRF Tandem_Repeat 29217 29254 76 + . . scaffold110 GLEAN mRNA 40232 40320 0.99879 - . ID=CGI_10008775; scaffold110 TRF Tandem_Repeat 40232 40320 61 + . . scaffold110 GLEAN mRNA 40294 40328 0.99879 - . ID=CGI_10008775; scaffold110 TRF Tandem_Repeat 40294 40328 70 + . . scaffold110 GLEAN mRNA 54804 54861 0.412633 - . ID=CGI_10008776; scaffold110 TRF Tandem_Repeat 54804 54861 82 + . . scaffold110 GLEAN mRNA 56085 57333 0.412633 - . ID=CGI_10008776; scaffold110 TRF Tandem_Repeat 56085 57333 1781 + . . scaffold110 GLEAN mRNA 133833 133866 0.774702 + . ID=CGI_10008780; scaffold110 TRF Tandem_Repeat 133833 133866 52 + . . scaffold110 GLEAN mRNA 133834 133890 0.774702 + . ID=CGI_10008780; scaffold110 TRF Tandem_Repeat 133834 133890 60 + . . scaffold110 GLEAN mRNA 133834 133890 0.774702 + . ID=CGI_10008780; scaffold110 TRF Tandem_Repeat 133834 133890 51 + . . scaffold110 GLEAN mRNA 137015 137105 0.774702 + . ID=CGI_10008780; scaffold110 TRF Tandem_Repeat 137015 137105 94 + . . scaffold110 GLEAN mRNA 148456 148529 0.774702 + . ID=CGI_10008780; scaffold110 TRF Tandem_Repeat 148456 148529 73 + . . scaffold110 GLEAN mRNA 148456 148529 0.774702 + . ID=CGI_10008780; scaffold110 TRF Tandem_Repeat 148456 148529 60 + . . scaffold110 GLEAN mRNA 155200 155244 0.774702 + . ID=CGI_10008780; scaffold110 TRF Tandem_Repeat 155200 155244 90 + . . scaffold110 GLEAN mRNA 159738 159779 0.774702 + . ID=CGI_10008780; scaffold110 TRF Tandem_Repeat 159738 159779 75 + . . scaffold110 GLEAN mRNA 170577 170696 0.774702 + . ID=CGI_10008780; scaffold110 TRF Tandem_Repeat 170577 170696 188 + . . scaffold110 GLEAN mRNA 148456 148529 0.722798 - . ID=CGI_10008781; scaffold110 TRF Tandem_Repeat 148456 148529 73 + . . scaffold110 GLEAN mRNA 148456 148529 0.722798 - . ID=CGI_10008781; scaffold110 TRF Tandem_Repeat 148456 148529 60 + . . scaffold173 GLEAN mRNA 8181 8225 1 + . ID=CGI_10008784; scaffold173 TRF Tandem_Repeat 8181 8225 72 + . . scaffold173 GLEAN mRNA 128034 128080 0.291746 + . ID=CGI_10008792; scaffold173 TRF Tandem_Repeat 128034 128080 67 + . . scaffold173 GLEAN mRNA 135069 135121 0.291746 + . ID=CGI_10008792; scaffold173 TRF Tandem_Repeat 135069 135121 106 + . . scaffold173 GLEAN mRNA 171969 172014 0.998095 + . ID=CGI_10008793; scaffold173 TRF Tandem_Repeat 171969 172014 58 + . . scaffold173 GLEAN mRNA 183830 184032 0.963766 + . ID=CGI_10008794; scaffold173 TRF Tandem_Repeat 183830 184032 379 + . . scaffold173 GLEAN mRNA 217119 217382 0.889923 + . ID=CGI_10008795; scaffold173 TRF Tandem_Repeat 217119 217382 354 + . . scaffold339 GLEAN mRNA 50997 51032 0.445268 - . ID=CGI_10008798; scaffold339 TRF Tandem_Repeat 50997 51032 72 + . . scaffold339 GLEAN mRNA 83722 83908 0.999948 - . ID=CGI_10008800; scaffold339 TRF Tandem_Repeat 83722 83908 169 + . . scaffold339 GLEAN mRNA 83712 83931 0.999948 - . ID=CGI_10008800; scaffold339 TRF Tandem_Repeat 83712 83931 298 + . . scaffold339 GLEAN mRNA 86775 87744 0.999948 - . ID=CGI_10008800; scaffold339 TRF Tandem_Repeat 86775 87744 1645 + . . scaffold339 GLEAN mRNA 88458 88504 0.999948 - . ID=CGI_10008800; scaffold339 TRF Tandem_Repeat 88458 88504 78 + . . scaffold339 GLEAN mRNA 97478 97521 0.998497 + . ID=CGI_10008801; scaffold339 TRF Tandem_Repeat 97478 97521 88 + . . scaffold339 GLEAN mRNA 150425 151437 0.999828 + . ID=CGI_10008803; scaffold339 TRF Tandem_Repeat 150425 151437 1256 + . . scaffold339 GLEAN mRNA 151775 152432 0.999828 + . ID=CGI_10008803; scaffold339 TRF Tandem_Repeat 151775 152432 838 + . . scaffold339 GLEAN mRNA 151775 152432 0.999828 + . ID=CGI_10008803; scaffold339 TRF Tandem_Repeat 151775 152432 840 + . . scaffold339 GLEAN mRNA 152739 153574 0.999828 + . ID=CGI_10008803; scaffold339 TRF Tandem_Repeat 152739 153574 1169 + . . scaffold339 GLEAN mRNA 155957 156292 0.999828 + . ID=CGI_10008803; scaffold339 WUBlastX LINE_RTE-X 155957 156292 48 - . . scaffold339 GLEAN mRNA 155737 155889 0.999828 + . ID=CGI_10008803; scaffold339 WUBlastX LINE_RTE-X 155737 155889 50 - . . scaffold43116 GLEAN mRNA 8340 8442 0.41095 + . ID=CGI_10008804; scaffold43116 TRF Tandem_Repeat 8340 8442 163 + . . scaffold43116 GLEAN mRNA 15371 15415 0.41095 + . ID=CGI_10008804; scaffold43116 TRF Tandem_Repeat 15371 15415 90 + . . scaffold43116 GLEAN mRNA 15371 15415 1 - . ID=CGI_10008805; scaffold43116 TRF Tandem_Repeat 15371 15415 90 + . . scaffold43116 GLEAN mRNA 49276 49376 0.988376 + . ID=CGI_10008808; scaffold43116 TRF Tandem_Repeat 49276 49376 87 + . . scaffold43116 GLEAN mRNA 51117 51307 0.988376 + . ID=CGI_10008808; scaffold43116 TRF Tandem_Repeat 51117 51307 138 + . . scaffold43116 GLEAN mRNA 54839 54998 0.988376 + . ID=CGI_10008808; scaffold43116 TRF Tandem_Repeat 54839 54998 241 + . . scaffold43116 GLEAN mRNA 56326 56366 0.988376 + . ID=CGI_10008808; scaffold43116 TRF Tandem_Repeat 56326 56366 82 + . . scaffold43116 GLEAN mRNA 56987 57039 0.988376 + . ID=CGI_10008808; scaffold43116 TRF Tandem_Repeat 56987 57039 61 + . . scaffold43116 GLEAN mRNA 56993 57039 0.988376 + . ID=CGI_10008808; scaffold43116 TRF Tandem_Repeat 56993 57039 62 + . . scaffold43116 GLEAN mRNA 49141 49248 0.988376 + . ID=CGI_10008808; scaffold43116 TRF Tandem_Repeat 49141 49248 84 + . . scaffold43116 GLEAN mRNA 84473 84501 1 + . ID=CGI_10008811; scaffold43116 TRF Tandem_Repeat 84473 84501 58 + . . scaffold43116 GLEAN mRNA 103888 104058 0.999676 - . ID=CGI_10008812; scaffold43116 WUBlastX LTR_Gypsy 103888 104058 75 - . . scaffold43116 GLEAN mRNA 103933 104070 0.999676 - . ID=CGI_10008812; scaffold43116 WUBlastX LTR_Gypsy 103933 104070 78 - . . scaffold43116 GLEAN mRNA 117314 117370 1 - . ID=CGI_10008813; scaffold43116 TRF Tandem_Repeat 117314 117370 105 + . . scaffold43116 GLEAN mRNA 140271 141452 1 - . ID=CGI_10008815; scaffold43116 WUBlastX LTR_Gypsy 140271 141452 723 - . . scaffold43116 GLEAN mRNA 145610 145648 1 + . ID=CGI_10008816; scaffold43116 TRF Tandem_Repeat 145610 145648 78 + . . scaffold43116 GLEAN mRNA 170468 170521 0.997059 - . ID=CGI_10008817; scaffold43116 TRF Tandem_Repeat 170468 170521 108 + . . scaffold43116 GLEAN mRNA 170659 170730 0.997059 - . ID=CGI_10008817; scaffold43116 TRF Tandem_Repeat 170659 170730 108 + . . scaffold43116 GLEAN mRNA 205116 205152 0.999941 - . ID=CGI_10008821; scaffold43116 TRF Tandem_Repeat 205116 205152 56 + . . scaffold1404 GLEAN mRNA 44906 45026 0.999676 + . ID=CGI_10008824; scaffold1404 TRF Tandem_Repeat 44906 45026 77 + . . scaffold1404 GLEAN mRNA 47204 47239 0.999676 + . ID=CGI_10008824; scaffold1404 TRF Tandem_Repeat 47204 47239 72 + . . scaffold1404 GLEAN mRNA 60399 60449 0.999949 - . ID=CGI_10008825; scaffold1404 TRF Tandem_Repeat 60399 60449 102 + . . scaffold1404 GLEAN mRNA 63688 63736 0.999949 - . ID=CGI_10008825; scaffold1404 TRF Tandem_Repeat 63688 63736 98 + . . scaffold1404 GLEAN mRNA 142207 142268 1 + . ID=CGI_10008831; scaffold1404 TRF Tandem_Repeat 142207 142268 124 + . . scaffold1404 GLEAN mRNA 177335 177361 0.544647 + . ID=CGI_10008832; scaffold1404 TRF Tandem_Repeat 177335 177361 54 + . . scaffold1404 GLEAN mRNA 186009 186041 0.544647 + . ID=CGI_10008832; scaffold1404 TRF Tandem_Repeat 186009 186041 66 + . . scaffold1404 GLEAN mRNA 195669 199615 0.544647 + . ID=CGI_10008832; scaffold1404 TRF Tandem_Repeat 195669 199615 4118 + . . scaffold1404 GLEAN mRNA 195669 199615 0.544647 + . ID=CGI_10008832; scaffold1404 TRF Tandem_Repeat 195669 199615 4582 + . . scaffold1404 GLEAN mRNA 195669 199615 0.544647 + . ID=CGI_10008832; scaffold1404 TRF Tandem_Repeat 195669 199615 4582 + . . scaffold43108 GLEAN mRNA 3329 3368 0.999975 + . ID=CGI_10008833; scaffold43108 TRF Tandem_Repeat 3329 3368 80 + . . scaffold43108 GLEAN mRNA 3850 3894 0.999975 + . ID=CGI_10008833; scaffold43108 TRF Tandem_Repeat 3850 3894 90 + . . scaffold43108 GLEAN mRNA 4138 4170 0.999975 + . ID=CGI_10008833; scaffold43108 TRF Tandem_Repeat 4138 4170 66 + . . scaffold43108 GLEAN mRNA 4240 4276 0.999975 + . ID=CGI_10008833; scaffold43108 TRF Tandem_Repeat 4240 4276 74 + . . scaffold43108 GLEAN mRNA 11051 11141 0.994801 + . ID=CGI_10008834; scaffold43108 TRF Tandem_Repeat 11051 11141 175 + . . scaffold43108 GLEAN mRNA 11338 11375 0.994801 + . ID=CGI_10008834; scaffold43108 TRF Tandem_Repeat 11338 11375 76 + . . scaffold43108 GLEAN mRNA 18539 18585 0.994801 + . ID=CGI_10008834; scaffold43108 TRF Tandem_Repeat 18539 18585 94 + . . scaffold43108 GLEAN mRNA 18539 18585 1 - . ID=CGI_10008835; scaffold43108 TRF Tandem_Repeat 18539 18585 94 + . . scaffold43108 GLEAN mRNA 63292 63318 0.979281 + . ID=CGI_10008836; scaffold43108 TRF Tandem_Repeat 63292 63318 54 + . . scaffold43108 GLEAN mRNA 65822 66503 0.979281 + . ID=CGI_10008836; scaffold43108 TRF Tandem_Repeat 65822 66503 986 + . . scaffold43108 GLEAN mRNA 76921 76979 0.999612 + . ID=CGI_10008839; scaffold43108 TRF Tandem_Repeat 76921 76979 118 + . . scaffold43108 GLEAN mRNA 131732 131768 1 + . ID=CGI_10008841; scaffold43108 TRF Tandem_Repeat 131732 131768 74 + . . scaffold43108 GLEAN mRNA 136105 136148 0.999223 - . ID=CGI_10008842; scaffold43108 TRF Tandem_Repeat 136105 136148 88 + . . scaffold43108 GLEAN mRNA 168563 168608 0.650985 + . ID=CGI_10008843; scaffold43108 TRF Tandem_Repeat 168563 168608 83 + . . scaffold1893 GLEAN mRNA 55613 56495 1 - . ID=CGI_10008849; scaffold1893 TRF Tandem_Repeat 55613 56495 1294 + . . scaffold1893 GLEAN mRNA 73605 73632 0.999675 - . ID=CGI_10008850; scaffold1893 TRF Tandem_Repeat 73605 73632 56 + . . scaffold1893 GLEAN mRNA 94109 94333 0.999676 + . ID=CGI_10008854; scaffold1893 TRF Tandem_Repeat 94109 94333 282 + . . scaffold1893 GLEAN mRNA 94061 94232 0.999676 + . ID=CGI_10008854; scaffold1893 TRF Tandem_Repeat 94061 94232 103 + . . scaffold1893 GLEAN mRNA 110324 111276 0.918146 - . ID=CGI_10008856; scaffold1893 TRF Tandem_Repeat 110324 111276 1347 + . . scaffold1893 GLEAN mRNA 111422 112439 0.918146 - . ID=CGI_10008856; scaffold1893 TRF Tandem_Repeat 111422 112439 1525 + . . scaffold1893 GLEAN mRNA 117163 117276 0.918146 - . ID=CGI_10008856; scaffold1893 TRF Tandem_Repeat 117163 117276 212 + . . scaffold1893 GLEAN mRNA 130745 130820 1 - . ID=CGI_10008857; scaffold1893 TRF Tandem_Repeat 130745 130820 134 + . . scaffold1893 GLEAN mRNA 132211 132238 1 - . ID=CGI_10008857; scaffold1893 TRF Tandem_Repeat 132211 132238 56 + . . scaffold1893 GLEAN mRNA 154038 154359 0.461031 + . ID=CGI_10008858; scaffold1893 TRF Tandem_Repeat 154038 154359 301 + . . scaffold1893 GLEAN mRNA 188878 188976 0.999571 + . ID=CGI_10008860; scaffold1893 TRF Tandem_Repeat 188878 188976 153 + . . scaffold1893 GLEAN mRNA 191808 191851 0.999571 + . ID=CGI_10008860; scaffold1893 TRF Tandem_Repeat 191808 191851 72 + . . scaffold1893 GLEAN mRNA 193706 193746 0.999571 + . ID=CGI_10008860; scaffold1893 TRF Tandem_Repeat 193706 193746 50 + . . scaffold1893 GLEAN mRNA 193697 193830 0.999571 + . ID=CGI_10008860; scaffold1893 TRF Tandem_Repeat 193697 193830 74 + . . scaffold1893 GLEAN mRNA 203398 203583 0.999824 + . ID=CGI_10008861; scaffold1893 WUBlastX DNA_IS4EU 203398 203583 37 - . . scaffold1893 GLEAN mRNA 200591 201550 0.999824 + . ID=CGI_10008861; scaffold1893 WUBlastX DNA_IS4EU 200591 201550 483 + . . scaffold1893 GLEAN mRNA 203068 203232 0.999824 + . ID=CGI_10008861; scaffold1893 WUBlastX DNA_Kolobok-IS4 203068 203232 36 - . . scaffold1893 GLEAN mRNA 202361 203050 0.999824 + . ID=CGI_10008861; scaffold1893 WUBlastX DNA_Kolobok-IS4 202361 203050 205 - . . scaffold1855 GLEAN mRNA 9397 9444 0.999972 - . ID=CGI_10008863; scaffold1855 TRF Tandem_Repeat 9397 9444 87 + . . scaffold1855 GLEAN mRNA 9444 9468 0.999972 - . ID=CGI_10008863; scaffold1855 TRF Tandem_Repeat 9444 9468 50 + . . scaffold1855 GLEAN mRNA 65283 65324 0.863503 + . ID=CGI_10008867; scaffold1855 TRF Tandem_Repeat 65283 65324 75 + . . scaffold1855 GLEAN mRNA 93902 93947 0.807623 - . ID=CGI_10008868; scaffold1855 TRF Tandem_Repeat 93902 93947 83 + . . scaffold1855 GLEAN mRNA 94356 94382 0.807623 - . ID=CGI_10008868; scaffold1855 TRF Tandem_Repeat 94356 94382 54 + . . scaffold1855 GLEAN mRNA 98070 98116 0.807623 - . ID=CGI_10008868; scaffold1855 TRF Tandem_Repeat 98070 98116 51 + . . scaffold1855 GLEAN mRNA 99084 99144 0.807623 - . ID=CGI_10008868; scaffold1855 TRF Tandem_Repeat 99084 99144 122 + . . scaffold1855 GLEAN mRNA 100160 100197 0.807623 - . ID=CGI_10008868; scaffold1855 TRF Tandem_Repeat 100160 100197 76 + . . scaffold1855 GLEAN mRNA 103685 103735 0.807623 - . ID=CGI_10008868; scaffold1855 TRF Tandem_Repeat 103685 103735 93 + . . scaffold1855 GLEAN mRNA 109893 109959 0.807623 - . ID=CGI_10008868; scaffold1855 TRF Tandem_Repeat 109893 109959 134 + . . scaffold1855 GLEAN mRNA 109893 109959 0.777693 + . ID=CGI_10008869; scaffold1855 TRF Tandem_Repeat 109893 109959 134 + . . scaffold1855 GLEAN mRNA 139784 139813 0.514933 - . ID=CGI_10008870; scaffold1855 TRF Tandem_Repeat 139784 139813 51 + . . scaffold1855 GLEAN mRNA 137665 137898 0.514933 - . ID=CGI_10008870; scaffold1855 WUBlastX LTR_Gypsy 137665 137898 26 - . . scaffold1855 GLEAN mRNA 189873 189913 0.999324 - . ID=CGI_10008876; scaffold1855 TRF Tandem_Repeat 189873 189913 82 + . . scaffold1855 GLEAN mRNA 190345 190385 0.999324 - . ID=CGI_10008876; scaffold1855 TRF Tandem_Repeat 190345 190385 82 + . . scaffold1855 GLEAN mRNA 201914 202098 0.999324 - . ID=CGI_10008876; scaffold1855 TRF Tandem_Repeat 201914 202098 264 + . . scaffold1855 GLEAN mRNA 202903 203647 0.999324 - . ID=CGI_10008876; scaffold1855 TRF Tandem_Repeat 202903 203647 1151 + . . scaffold1855 GLEAN mRNA 203821 203868 0.999324 - . ID=CGI_10008876; scaffold1855 TRF Tandem_Repeat 203821 203868 55 + . . scaffold1855 GLEAN mRNA 205682 206389 0.999324 - . ID=CGI_10008876; scaffold1855 WUBlastX LINE_RTE-X 205682 206389 158 - . . scaffold1855 GLEAN mRNA 201339 201620 0.999324 - . ID=CGI_10008876; scaffold1855 WUBlastX LINE_RTE-X 201339 201620 47 + . . scaffold1855 GLEAN mRNA 201065 201490 0.999324 - . ID=CGI_10008876; scaffold1855 WUBlastX LINE_RTE-X 201065 201490 181 + . . scaffold1855 GLEAN mRNA 205603 205668 0.999324 - . ID=CGI_10008876; scaffold1855 WUBlastX LINE_RTE-X 205603 205668 21 - . . scaffold1388 GLEAN mRNA 11253 11287 0.580489 - . ID=CGI_10008878; scaffold1388 TRF Tandem_Repeat 11253 11287 70 + . . scaffold1388 GLEAN mRNA 13428 13454 0.580489 - . ID=CGI_10008878; scaffold1388 TRF Tandem_Repeat 13428 13454 54 + . . scaffold1388 GLEAN mRNA 16830 16887 0.580489 - . ID=CGI_10008878; scaffold1388 TRF Tandem_Repeat 16830 16887 116 + . . scaffold1388 GLEAN mRNA 22527 22609 0.580489 - . ID=CGI_10008878; scaffold1388 TRF Tandem_Repeat 22527 22609 157 + . . scaffold1388 GLEAN mRNA 24329 24371 0.580489 - . ID=CGI_10008878; scaffold1388 TRF Tandem_Repeat 24329 24371 86 + . . scaffold1388 GLEAN mRNA 26351 27164 0.580489 - . ID=CGI_10008878; scaffold1388 TRF Tandem_Repeat 26351 27164 678 + . . scaffold1388 GLEAN mRNA 165668 165710 0.999675 - . ID=CGI_10008881; scaffold1388 TRF Tandem_Repeat 165668 165710 77 + . . scaffold1388 GLEAN mRNA 171819 171882 0.999675 - . ID=CGI_10008881; scaffold1388 TRF Tandem_Repeat 171819 171882 60 + . . scaffold1388 GLEAN mRNA 173519 173554 0.999675 - . ID=CGI_10008881; scaffold1388 TRF Tandem_Repeat 173519 173554 63 + . . scaffold1388 GLEAN mRNA 190772 190839 0.977359 - . ID=CGI_10008882; scaffold1388 TRF Tandem_Repeat 190772 190839 127 + . . scaffold1388 GLEAN mRNA 202351 202482 0.975915 - . ID=CGI_10008883; scaffold1388 TRF Tandem_Repeat 202351 202482 113 + . . scaffold43134 GLEAN mRNA 33328 33376 0.451345 - . ID=CGI_10008887; scaffold43134 TRF Tandem_Repeat 33328 33376 98 + . . scaffold43134 GLEAN mRNA 113574 113623 0.987687 + . ID=CGI_10008894; scaffold43134 TRF Tandem_Repeat 113574 113623 75 + . . scaffold43134 GLEAN mRNA 113796 115702 0.987687 + . ID=CGI_10008894; scaffold43134 TRF Tandem_Repeat 113796 115702 3593 + . . scaffold43134 GLEAN mRNA 140825 140872 0.498925 + . ID=CGI_10008896; scaffold43134 TRF Tandem_Repeat 140825 140872 96 + . . scaffold43134 GLEAN mRNA 137535 138848 0.498925 + . ID=CGI_10008896; scaffold43134 WUBlastX LINE_RTE-X 137535 138848 517 - . . scaffold43134 GLEAN mRNA 138303 138962 0.498925 + . ID=CGI_10008896; scaffold43134 WUBlastX LINE_RTE-BovB 138303 138962 58 - . . scaffold43134 GLEAN mRNA 149233 151208 0.468222 + . ID=CGI_10008897; scaffold43134 TRF Tandem_Repeat 149233 151208 3055 + . . scaffold43134 GLEAN mRNA 160309 160359 0.468222 + . ID=CGI_10008897; scaffold43134 TRF Tandem_Repeat 160309 160359 102 + . . scaffold43134 GLEAN mRNA 161836 161883 0.468222 + . ID=CGI_10008897; scaffold43134 TRF Tandem_Repeat 161836 161883 96 + . . scaffold43134 GLEAN mRNA 211056 211280 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 211056 211280 45 + . . scaffold43134 GLEAN mRNA 211417 211920 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 211417 211920 177 + . . scaffold43134 GLEAN mRNA 212256 212468 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 212256 212468 114 - . . scaffold43134 GLEAN mRNA 213753 213926 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 213753 213926 49 - . . scaffold43134 GLEAN mRNA 214645 214956 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 214645 214956 54 - . . scaffold43134 GLEAN mRNA 213022 213642 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 213022 213642 372 - . . scaffold43134 GLEAN mRNA 212256 212468 0.948909 - . ID=CGI_10008899; scaffold43134 WUBlastX DNA_IS4EU 212256 212468 114 - . . scaffold43134 GLEAN mRNA 213753 213926 0.948909 - . ID=CGI_10008899; scaffold43134 WUBlastX DNA_IS4EU 213753 213926 49 - . . scaffold43134 GLEAN mRNA 214645 214956 0.948909 - . ID=CGI_10008899; scaffold43134 WUBlastX DNA_IS4EU 214645 214956 54 - . . scaffold43134 GLEAN mRNA 213022 213642 0.948909 - . ID=CGI_10008899; scaffold43134 WUBlastX DNA_IS4EU 213022 213642 372 - . . scaffold635 GLEAN mRNA 10245 10294 0.999676 - . ID=CGI_10008917; scaffold635 TRF Tandem_Repeat 10245 10294 75 + . . scaffold635 GLEAN mRNA 11094 11190 0.999676 - . ID=CGI_10008917; scaffold635 TRF Tandem_Repeat 11094 11190 117 + . . scaffold635 GLEAN mRNA 29128 29472 0.999676 - . ID=CGI_10008917; scaffold635 TRF Tandem_Repeat 29128 29472 406 + . . scaffold635 GLEAN mRNA 30973 31224 0.999676 - . ID=CGI_10008917; scaffold635 TRF Tandem_Repeat 30973 31224 330 + . . scaffold635 GLEAN mRNA 30973 31266 0.999676 - . ID=CGI_10008917; scaffold635 TRF Tandem_Repeat 30973 31266 305 + . . scaffold635 GLEAN mRNA 57779 58090 0.834155 - . ID=CGI_10008919; scaffold635 WUBlastX DNA_hAT 57779 58090 59 - . . scaffold635 GLEAN mRNA 117786 117965 0.98729 - . ID=CGI_10008922; scaffold635 WUBlastX LTR_Gypsy-Cigr 117786 117965 70 - . . scaffold635 GLEAN mRNA 117822 117965 0.98729 - . ID=CGI_10008922; scaffold635 WUBlastX LTR_Gypsy-Cigr 117822 117965 85 - . . scaffold635 GLEAN mRNA 117822 118010 0.98729 - . ID=CGI_10008922; scaffold635 WUBlastX LTR_Gypsy 117822 118010 75 - . . scaffold635 GLEAN mRNA 115861 116391 0.98729 - . ID=CGI_10008922; scaffold635 WUBlastX LTR_Gypsy 115861 116391 221 - . . scaffold635 GLEAN mRNA 116354 116488 0.98729 - . ID=CGI_10008922; scaffold635 WUBlastX LTR_Gypsy 116354 116488 98 - . . scaffold635 GLEAN mRNA 116683 116775 0.98729 - . ID=CGI_10008922; scaffold635 WUBlastX LTR_Gypsy 116683 116775 22 - . . scaffold635 GLEAN mRNA 115768 116355 0.98729 - . ID=CGI_10008922; scaffold635 WUBlastX LTR_Gypsy 115768 116355 172 - . . scaffold635 GLEAN mRNA 116393 116611 0.98729 - . ID=CGI_10008922; scaffold635 WUBlastX LTR_Gypsy 116393 116611 41 - . . scaffold635 GLEAN mRNA 116592 116681 0.98729 - . ID=CGI_10008922; scaffold635 WUBlastX LTR_Gypsy 116592 116681 22 - . . scaffold635 GLEAN mRNA 148760 148795 1 + . ID=CGI_10008924; scaffold635 TRF Tandem_Repeat 148760 148795 72 + . . scaffold635 GLEAN mRNA 165192 165253 0.558394 + . ID=CGI_10008926; scaffold635 TRF Tandem_Repeat 165192 165253 56 + . . scaffold43122 GLEAN mRNA 10674 10737 0.988225 - . ID=CGI_10008930; scaffold43122 TRF Tandem_Repeat 10674 10737 51 + . . scaffold43122 GLEAN mRNA 11812 11850 0.988225 - . ID=CGI_10008930; scaffold43122 TRF Tandem_Repeat 11812 11850 78 + . . scaffold43122 GLEAN mRNA 19624 19771 0.988225 - . ID=CGI_10008930; scaffold43122 TRF Tandem_Repeat 19624 19771 77 + . . scaffold43122 GLEAN mRNA 20464 20632 0.988225 - . ID=CGI_10008930; scaffold43122 TRF Tandem_Repeat 20464 20632 160 + . . scaffold43122 GLEAN mRNA 22480 22527 0.988225 - . ID=CGI_10008930; scaffold43122 TRF Tandem_Repeat 22480 22527 96 + . . scaffold43122 GLEAN mRNA 31100 31139 0.999491 + . ID=CGI_10008931; scaffold43122 TRF Tandem_Repeat 31100 31139 62 + . . scaffold43122 GLEAN mRNA 51887 52295 0.999973 + . ID=CGI_10008933; scaffold43122 TRF Tandem_Repeat 51887 52295 435 + . . scaffold43122 GLEAN mRNA 75356 75402 0.99566 + . ID=CGI_10008936; scaffold43122 WUBlastX LINE_RTE-X 75356 75634 172 + . . scaffold43122 GLEAN mRNA 116721 116755 0.68095 - . ID=CGI_10008940; scaffold43122 TRF Tandem_Repeat 116721 116755 70 + . . scaffold43122 GLEAN mRNA 116753 116811 0.68095 - . ID=CGI_10008940; scaffold43122 TRF Tandem_Repeat 116753 116811 95 + . . scaffold43122 GLEAN mRNA 136567 136612 0.68095 - . ID=CGI_10008940; scaffold43122 TRF Tandem_Repeat 136567 136612 92 + . . scaffold43122 GLEAN mRNA 145429 145917 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 145429 145917 268 + . . scaffold43122 GLEAN mRNA 139544 139816 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 139544 139816 46 + . . scaffold43122 GLEAN mRNA 139957 140142 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 139957 140142 110 + . . scaffold43122 GLEAN mRNA 140960 141328 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 140960 141328 119 + . . scaffold43122 GLEAN mRNA 141412 141546 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 141412 141546 23 + . . scaffold43122 GLEAN mRNA 142929 143192 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 142929 143192 24 + . . scaffold43122 GLEAN mRNA 143846 143968 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LTR_DIRS 143846 143968 27 + . . scaffold43122 GLEAN mRNA 135339 135494 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LINE_Penelope 135339 135494 46 + . . scaffold43122 GLEAN mRNA 135500 136057 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LINE_Penelope 135500 136057 182 + . . scaffold43122 GLEAN mRNA 181039 181071 0.999898 - . ID=CGI_10008941; scaffold43122 TRF Tandem_Repeat 181039 181071 66 + . . scaffold1247 GLEAN mRNA 109196 109231 0.95838 - . ID=CGI_10008945; scaffold1247 TRF Tandem_Repeat 109196 109231 72 + . . scaffold1247 GLEAN mRNA 112215 112400 0.95838 - . ID=CGI_10008945; scaffold1247 WUBlastX LINE_L1-Tx1 112215 112400 30 + . . scaffold1247 GLEAN mRNA 113688 113966 0.95838 - . ID=CGI_10008945; scaffold1247 WUBlastX DNA_TcMar-Tc1 113688 113966 39 + . . scaffold1247 GLEAN mRNA 112649 113146 0.95838 - . ID=CGI_10008945; scaffold1247 WUBlastX LINE_L1 112649 113146 61 + . . scaffold1247 GLEAN mRNA 112751 113146 0.95838 - . ID=CGI_10008945; scaffold1247 WUBlastX LINE_L1-Tx1 112751 113146 83 + . . scaffold1247 GLEAN mRNA 112766 113230 0.95838 - . ID=CGI_10008945; scaffold1247 WUBlastX LINE_L1-Tx1 112766 113230 25 + . . scaffold1247 GLEAN mRNA 113982 114248 0.95838 - . ID=CGI_10008945; scaffold1247 WUBlastX DNA_TcMar-Tc1 113982 114248 157 + . . scaffold1247 GLEAN mRNA 113832 114248 0.95838 - . ID=CGI_10008945; scaffold1247 WUBlastX DNA_TcMar-Tc1 113832 114248 142 + . . scaffold1247 GLEAN mRNA 131738 131764 0.65315 + . ID=CGI_10008946; scaffold1247 TRF Tandem_Repeat 131738 131764 54 + . . scaffold1247 GLEAN mRNA 133500 133727 0.65315 + . ID=CGI_10008946; scaffold1247 TRF Tandem_Repeat 133500 133727 167 + . . scaffold1247 GLEAN mRNA 142100 143271 0.65315 + . ID=CGI_10008946; scaffold1247 TRF Tandem_Repeat 142100 143271 1736 + . . scaffold1247 GLEAN mRNA 145236 145278 0.65315 + . ID=CGI_10008946; scaffold1247 TRF Tandem_Repeat 145236 145278 86 + . . scaffold1247 GLEAN mRNA 145327 145366 0.65315 + . ID=CGI_10008946; scaffold1247 TRF Tandem_Repeat 145327 145366 71 + . . scaffold1247 GLEAN mRNA 145236 145278 0.999741 - . ID=CGI_10008947; scaffold1247 TRF Tandem_Repeat 145236 145278 86 + . . scaffold1247 GLEAN mRNA 145327 145366 0.999741 - . ID=CGI_10008947; scaffold1247 TRF Tandem_Repeat 145327 145366 71 + . . scaffold1247 GLEAN mRNA 181691 181716 0.886383 - . ID=CGI_10008950; scaffold1247 TRF Tandem_Repeat 181691 181716 52 + . . scaffold1247 GLEAN mRNA 182961 183137 0.886383 - . ID=CGI_10008950; scaffold1247 WUBlastX DNA_TcMar-Tc1 182961 183137 58 + . . scaffold1247 GLEAN mRNA 181983 182192 0.886383 - . ID=CGI_10008950; scaffold1247 WUBlastX DNA_TcMar-Tc1 181983 182192 73 + . . scaffold1247 GLEAN mRNA 180915 181172 0.886383 - . ID=CGI_10008950; scaffold1247 WUBlastX DNA_MuDR 180915 181172 64 - . . scaffold43130 GLEAN mRNA 4324 4361 0.999898 - . ID=CGI_10008957; scaffold43130 TRF Tandem_Repeat 4324 4361 60 + . . scaffold43130 GLEAN mRNA 35965 36060 0.994004 + . ID=CGI_10008958; scaffold43130 TRF Tandem_Repeat 35965 36060 67 + . . scaffold43130 GLEAN mRNA 35965 36060 1 - . ID=CGI_10008959; scaffold43130 TRF Tandem_Repeat 35965 36060 67 + . . scaffold43130 GLEAN mRNA 108064 108099 0.992485 - . ID=CGI_10008963; scaffold43130 TRF Tandem_Repeat 108064 108099 72 + . . scaffold43130 GLEAN mRNA 115724 115765 0.992485 - . ID=CGI_10008963; scaffold43130 TRF Tandem_Repeat 115724 115765 84 + . . scaffold43130 GLEAN mRNA 122007 122053 0.992485 - . ID=CGI_10008963; scaffold43130 TRF Tandem_Repeat 122007 122053 58 + . . scaffold43130 GLEAN mRNA 122084 122569 0.992485 - . ID=CGI_10008963; scaffold43130 WUBlastX LINE_RTE-X 122084 122569 52 + . . scaffold43130 GLEAN mRNA 122180 122704 0.992485 - . ID=CGI_10008963; scaffold43130 WUBlastX LINE_RTE-X 122180 122704 27 + . . scaffold43130 GLEAN mRNA 122237 122569 0.992485 - . ID=CGI_10008963; scaffold43130 WUBlastX LINE_RTE-X 122237 122569 81 + . . scaffold43130 GLEAN mRNA 122354 122599 0.992485 - . ID=CGI_10008963; scaffold43130 WUBlastX LINE_RTE-X 122354 122599 90 + . . scaffold43130 GLEAN mRNA 173778 173812 0.532479 - . ID=CGI_10008964; scaffold43130 TRF Tandem_Repeat 173778 173812 70 + . . scaffold43130 GLEAN mRNA 166860 167051 0.532479 - . ID=CGI_10008964; scaffold43130 WUBlastX LINE_CR1-L2 166860 167051 52 + . . scaffold43130 GLEAN mRNA 182444 183736 0.532479 - . ID=CGI_10008964; scaffold43130 TRF Tandem_Repeat 182444 183736 1572 + . . scaffold43130 GLEAN mRNA 182168 183736 0.532479 - . ID=CGI_10008964; scaffold43130 TRF Tandem_Repeat 182168 183736 1685 + . . scaffold43130 GLEAN mRNA 183906 183948 0.532479 - . ID=CGI_10008964; scaffold43130 TRF Tandem_Repeat 183906 183948 56 + . . scaffold1738 GLEAN mRNA 93242 93284 0.747668 + . ID=CGI_10008969; scaffold1738 TRF Tandem_Repeat 93242 93284 86 + . . scaffold1738 GLEAN mRNA 95307 95492 0.747668 + . ID=CGI_10008969; scaffold1738 TRF Tandem_Repeat 95307 95492 149 + . . scaffold1738 GLEAN mRNA 112653 112686 0.999676 + . ID=CGI_10008970; scaffold1738 TRF Tandem_Repeat 112653 112686 68 + . . scaffold1738 GLEAN mRNA 103657 103773 0.999676 + . ID=CGI_10008970; scaffold1738 WUBlastX DNA_TcMar-Tc1 103657 103773 31 - . . scaffold1738 GLEAN mRNA 102794 103651 0.999676 + . ID=CGI_10008970; scaffold1738 WUBlastX DNA_TcMar-Tc1 102794 103651 394 - . . scaffold1738 GLEAN mRNA 101617 102192 0.999676 + . ID=CGI_10008970; scaffold1738 WUBlastX LINE_L2 101617 102192 210 + . . scaffold1738 GLEAN mRNA 129166 129190 0.966833 + . ID=CGI_10008972; scaffold1738 TRF Tandem_Repeat 129166 129190 50 + . . scaffold1738 GLEAN mRNA 167039 167088 0.662219 + . ID=CGI_10008974; scaffold1738 TRF Tandem_Repeat 167039 167088 100 + . . scaffold1738 GLEAN mRNA 179978 180121 0.662219 + . ID=CGI_10008974; scaffold1738 TRF Tandem_Repeat 179978 180121 126 + . . scaffold1738 GLEAN mRNA 180916 181027 0.662219 + . ID=CGI_10008974; scaffold1738 TRF Tandem_Repeat 180916 181027 163 + . . scaffold1738 GLEAN mRNA 181204 181253 0.662219 + . ID=CGI_10008974; scaffold1738 TRF Tandem_Repeat 181204 181253 100 + . . scaffold1738 GLEAN mRNA 181285 181336 0.662219 + . ID=CGI_10008974; scaffold1738 TRF Tandem_Repeat 181285 181336 104 + . . scaffold517 GLEAN mRNA 15499 15696 0.999372 + . ID=CGI_10008976; scaffold517 WUBlastX LTR_Gypsy 15499 15696 33 + . . scaffold517 GLEAN mRNA 32542 32592 0.883003 + . ID=CGI_10008977; scaffold517 TRF Tandem_Repeat 32542 32592 102 + . . scaffold517 GLEAN mRNA 27745 28110 0.883003 + . ID=CGI_10008977; scaffold517 WUBlastX LINE_Penelope 27745 28110 47 + . . scaffold517 GLEAN mRNA 27835 28518 0.883003 + . ID=CGI_10008977; scaffold517 WUBlastX LINE_Penelope 27835 28518 306 + . . scaffold517 GLEAN mRNA 39243 39284 0.883003 + . ID=CGI_10008977; scaffold517 TRF Tandem_Repeat 39243 39284 61 + . . scaffold517 GLEAN mRNA 39240 39296 0.883003 + . ID=CGI_10008977; scaffold517 TRF Tandem_Repeat 39240 39296 53 + . . scaffold517 GLEAN mRNA 39240 39294 0.883003 + . ID=CGI_10008977; scaffold517 TRF Tandem_Repeat 39240 39294 58 + . . scaffold517 GLEAN mRNA 52816 52875 0.999863 + . ID=CGI_10008978; scaffold517 TRF Tandem_Repeat 52816 52875 120 + . . scaffold517 GLEAN mRNA 74133 74370 0.557561 - . ID=CGI_10008980; scaffold517 TRF Tandem_Repeat 74133 74370 164 + . . scaffold517 GLEAN mRNA 74193 74384 0.557561 - . ID=CGI_10008980; scaffold517 TRF Tandem_Repeat 74193 74384 118 + . . scaffold517 GLEAN mRNA 126754 126803 0.435831 + . ID=CGI_10008983; scaffold517 TRF Tandem_Repeat 126754 126803 91 + . . scaffold517 GLEAN mRNA 191056 191277 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX DNA_Kolobok 191056 191277 51 + . . scaffold517 GLEAN mRNA 191411 191653 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX DNA_Kolobok 191411 191653 85 + . . scaffold517 GLEAN mRNA 192221 192526 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX DNA_Kolobok 192221 192526 80 + . . scaffold517 GLEAN mRNA 199445 199699 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX LINE_L1 199445 199699 58 - . . scaffold517 GLEAN mRNA 199771 200259 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX LINE_L1-Tx1 199771 200259 174 - . . scaffold517 GLEAN mRNA 200306 200857 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX LINE_L1-Tx1 200306 200857 349 - . . scaffold517 GLEAN mRNA 199290 199436 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX LINE_L1 199290 199436 46 - . . scaffold517 GLEAN mRNA 201127 201213 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX LINE_L1-Tx1 201127 201213 22 - . . scaffold517 GLEAN mRNA 200099 200857 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX LINE_L1 200099 200857 192 - . . scaffold517 GLEAN mRNA 199200 199403 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX LINE_L1 199200 199403 21 - . . scaffold517 GLEAN mRNA 200528 200929 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX LINE_CR1 200528 200929 46 - . . scaffold517 GLEAN mRNA 209608 209781 0.317127 - . ID=CGI_10008985; scaffold517 WUBlastX LINE_Penelope 209608 209781 33 - . . scaffold517 GLEAN mRNA 209768 210058 0.317127 - . ID=CGI_10008985; scaffold517 WUBlastX LINE_Penelope 209768 210058 38 - . . scaffold517 GLEAN mRNA 209768 209971 0.317127 - . ID=CGI_10008985; scaffold517 WUBlastX LINE_Penelope 209768 209971 81 - . . scaffold939 GLEAN mRNA 14869 15000 0.989675 + . ID=CGI_10008988; scaffold939 TRF Tandem_Repeat 14869 15000 246 + . . scaffold939 GLEAN mRNA 104615 104803 0.992629 - . ID=CGI_10008991; scaffold939 WUBlastX LTR_DIRS 104615 104803 33 - . . scaffold939 GLEAN mRNA 117502 117538 0.997242 + . ID=CGI_10008992; scaffold939 TRF Tandem_Repeat 117502 117538 74 + . . scaffold939 GLEAN mRNA 117767 117875 0.997242 + . ID=CGI_10008992; scaffold939 TRF Tandem_Repeat 117767 117875 78 + . . scaffold939 GLEAN mRNA 117772 117859 0.997242 + . ID=CGI_10008992; scaffold939 TRF Tandem_Repeat 117772 117859 104 + . . scaffold939 GLEAN mRNA 117873 117923 0.997242 + . ID=CGI_10008992; scaffold939 TRF Tandem_Repeat 117873 117923 102 + . . scaffold939 GLEAN mRNA 120818 120860 0.997242 + . ID=CGI_10008992; scaffold939 TRF Tandem_Repeat 120818 120860 50 + . . scaffold939 GLEAN mRNA 122263 122296 0.997242 + . ID=CGI_10008992; scaffold939 TRF Tandem_Repeat 122263 122296 68 + . . scaffold939 GLEAN mRNA 123069 123095 0.997242 + . ID=CGI_10008992; scaffold939 TRF Tandem_Repeat 123069 123095 54 + . . scaffold939 GLEAN mRNA 126319 126557 0.997242 + . ID=CGI_10008992; scaffold939 TRF Tandem_Repeat 126319 126557 352 + . . scaffold939 GLEAN mRNA 127874 128091 0.997242 + . ID=CGI_10008992; scaffold939 TRF Tandem_Repeat 127874 128091 283 + . . scaffold939 GLEAN mRNA 136604 136644 0.470602 + . ID=CGI_10008993; scaffold939 TRF Tandem_Repeat 136604 136644 55 + . . scaffold939 GLEAN mRNA 169142 169189 0.999675 - . ID=CGI_10008995; scaffold939 TRF Tandem_Repeat 169142 169189 96 + . . scaffold939 GLEAN mRNA 169252 169320 0.999675 - . ID=CGI_10008995; scaffold939 TRF Tandem_Repeat 169252 169320 111 + . . scaffold939 GLEAN mRNA 208652 208688 0.819596 + . ID=CGI_10008997; scaffold939 TRF Tandem_Repeat 208652 208688 51 + . . scaffold939 GLEAN mRNA 208652 208688 0.819596 + . ID=CGI_10008997; scaffold939 TRF Tandem_Repeat 208652 208688 51 + . . scaffold43136 GLEAN mRNA 7436 7635 0.999372 - . ID=CGI_10009000; scaffold43136 WUBlastX LTR_Gypsy 7436 8074 71 + . . scaffold43136 GLEAN mRNA 67149 67453 0.999676 - . ID=CGI_10009002; scaffold43136 TRF Tandem_Repeat 67149 67453 371 + . . scaffold43136 GLEAN mRNA 67453 67901 0.999676 - . ID=CGI_10009002; scaffold43136 TRF Tandem_Repeat 67453 67901 591 + . . scaffold43136 GLEAN mRNA 70535 70835 0.999676 - . ID=CGI_10009002; scaffold43136 TRF Tandem_Repeat 70535 70835 541 + . . scaffold43136 GLEAN mRNA 71367 71437 0.999676 - . ID=CGI_10009002; scaffold43136 TRF Tandem_Repeat 71367 71437 135 + . . scaffold43136 GLEAN mRNA 71986 72043 0.999676 - . ID=CGI_10009002; scaffold43136 TRF Tandem_Repeat 71986 72043 109 + . . scaffold1869 GLEAN mRNA 5311 6664 0.999993 + . ID=CGI_10009010; scaffold1869 TRF Tandem_Repeat 5311 6664 1986 + . . scaffold1869 GLEAN mRNA 7316 7615 0.999993 + . ID=CGI_10009010; scaffold1869 TRF Tandem_Repeat 7316 7615 449 + . . scaffold1869 GLEAN mRNA 7319 7653 0.999993 + . ID=CGI_10009010; scaffold1869 TRF Tandem_Repeat 7319 7653 410 + . . scaffold1869 GLEAN mRNA 14903 15080 0.526029 - . ID=CGI_10009011; scaffold1869 TRF Tandem_Repeat 14903 15080 259 + . . scaffold1869 GLEAN mRNA 15493 15843 0.526029 - . ID=CGI_10009011; scaffold1869 WUBlastX DNA_Sola 15493 15843 122 + . . scaffold1869 GLEAN mRNA 15544 15834 0.526029 - . ID=CGI_10009011; scaffold1869 WUBlastX DNA_Sola 15544 15834 122 + . . scaffold1869 GLEAN mRNA 15890 15991 0.526029 - . ID=CGI_10009011; scaffold1869 WUBlastX DNA_Sola 15890 15991 22 + . . scaffold1869 GLEAN mRNA 15390 15530 0.526029 - . ID=CGI_10009011; scaffold1869 WUBlastX DNA_Sola 15390 15530 75 + . . scaffold1869 GLEAN mRNA 17307 17842 0.526029 - . ID=CGI_10009011; scaffold1869 TRF Tandem_Repeat 17307 17842 822 + . . scaffold1869 GLEAN mRNA 27949 28281 0.526029 - . ID=CGI_10009011; scaffold1869 TRF Tandem_Repeat 27949 28281 485 + . . scaffold1869 GLEAN mRNA 19381 19797 0.526029 - . ID=CGI_10009011; scaffold1869 WUBlastX LTR_Pao 19381 19797 39 - . . scaffold1869 GLEAN mRNA 14903 15080 0.999984 + . ID=CGI_10009012; scaffold1869 TRF Tandem_Repeat 14903 15080 259 + . . scaffold1869 GLEAN mRNA 15493 15843 0.999984 + . ID=CGI_10009012; scaffold1869 WUBlastX DNA_Sola 15493 15843 122 + . . scaffold1869 GLEAN mRNA 15544 15834 0.999984 + . ID=CGI_10009012; scaffold1869 WUBlastX DNA_Sola 15544 15834 122 + . . scaffold1869 GLEAN mRNA 15890 15991 0.999984 + . ID=CGI_10009012; scaffold1869 WUBlastX DNA_Sola 15890 15991 22 + . . scaffold1869 GLEAN mRNA 15390 15530 0.999984 + . ID=CGI_10009012; scaffold1869 WUBlastX DNA_Sola 15390 15530 75 + . . scaffold1869 GLEAN mRNA 79109 79320 0.999415 + . ID=CGI_10009015; scaffold1869 TRF Tandem_Repeat 79109 79320 248 + . . scaffold1869 GLEAN mRNA 79994 80471 0.999415 + . ID=CGI_10009015; scaffold1869 TRF Tandem_Repeat 79994 80471 695 + . . scaffold1869 GLEAN mRNA 81095 81404 0.999415 + . ID=CGI_10009015; scaffold1869 TRF Tandem_Repeat 81095 81404 346 + . . scaffold1869 GLEAN mRNA 81119 81305 0.999415 + . ID=CGI_10009015; scaffold1869 TRF Tandem_Repeat 81119 81305 182 + . . scaffold1869 GLEAN mRNA 81098 81383 0.999415 + . ID=CGI_10009015; scaffold1869 TRF Tandem_Repeat 81098 81383 518 + . . scaffold1869 GLEAN mRNA 81176 81423 0.999415 + . ID=CGI_10009015; scaffold1869 TRF Tandem_Repeat 81176 81423 227 + . . scaffold1869 GLEAN mRNA 81100 81427 0.999415 + . ID=CGI_10009015; scaffold1869 TRF Tandem_Repeat 81100 81427 363 + . . scaffold1869 GLEAN mRNA 193385 193420 0.316971 - . ID=CGI_10009023; scaffold1869 TRF Tandem_Repeat 193385 193420 72 + . . scaffold1869 GLEAN mRNA 193385 193420 0.999994 + . ID=CGI_10009024; scaffold1869 TRF Tandem_Repeat 193385 193420 72 + . . scaffold1869 GLEAN mRNA 203876 203907 1 - . ID=CGI_10009025; scaffold1869 TRF Tandem_Repeat 203876 203907 64 + . . scaffold1869 GLEAN mRNA 205873 206334 1 - . ID=CGI_10009025; scaffold1869 WUBlastX LINE_L1-Tx1 205873 206334 123 - . . scaffold1869 GLEAN mRNA 205852 206475 1 - . ID=CGI_10009025; scaffold1869 WUBlastX LINE_L1-Tx1 205852 206475 69 - . . scaffold1869 GLEAN mRNA 209824 209954 0.793163 - . ID=CGI_10009026; scaffold1869 TRF Tandem_Repeat 209824 209954 133 + . . scaffold1869 GLEAN mRNA 209805 209973 0.793163 - . ID=CGI_10009026; scaffold1869 TRF Tandem_Repeat 209805 209973 293 + . . scaffold43150 GLEAN mRNA 74054 74100 0.999364 + . ID=CGI_10009031; scaffold43150 TRF Tandem_Repeat 74054 74100 94 + . . scaffold43150 GLEAN mRNA 76604 76659 0.999364 + . ID=CGI_10009031; scaffold43150 TRF Tandem_Repeat 76604 76659 112 + . . scaffold43150 GLEAN mRNA 103616 103654 0.998791 - . ID=CGI_10009032; scaffold43150 TRF Tandem_Repeat 103616 103654 53 + . . scaffold43150 GLEAN mRNA 103613 103674 0.998791 - . ID=CGI_10009032; scaffold43150 TRF Tandem_Repeat 103613 103674 67 + . . scaffold43150 GLEAN mRNA 108801 109400 0.998791 - . ID=CGI_10009032; scaffold43150 WUBlastX LINE_RTE-X 108801 109400 135 + . . scaffold43150 GLEAN mRNA 105065 105421 0.998791 - . ID=CGI_10009032; scaffold43150 WUBlastX LINE_RTE-X 105065 105421 217 + . . scaffold43150 GLEAN mRNA 105479 107569 0.998791 - . ID=CGI_10009032; scaffold43150 WUBlastX LINE_RTE-X 105479 107569 1253 + . . scaffold43150 GLEAN mRNA 107964 109241 0.998791 - . ID=CGI_10009032; scaffold43150 WUBlastX LINE_RTE-X 107964 109241 872 + . . scaffold43150 GLEAN mRNA 107835 108650 0.998791 - . ID=CGI_10009032; scaffold43150 WUBlastX LINE_RTE-BovB 107835 108650 142 + . . scaffold43150 GLEAN mRNA 107545 107688 0.998791 - . ID=CGI_10009032; scaffold43150 WUBlastX LINE_CR1 107545 107688 29 + . . scaffold43150 GLEAN mRNA 107090 107659 0.998791 - . ID=CGI_10009032; scaffold43150 WUBlastX LINE_L1 107090 107659 48 + . . scaffold43150 GLEAN mRNA 105065 105093 1 + . ID=CGI_10009033; scaffold43150 WUBlastX LINE_RTE-X 105065 105421 217 + . . scaffold43150 GLEAN mRNA 133382 137185 1 + . ID=CGI_10009035; scaffold43150 WUBlastX LINE_L1-Tx1 133382 137185 1935 + . . scaffold43150 GLEAN mRNA 132133 132936 1 + . ID=CGI_10009035; scaffold43150 WUBlastX LINE_L1 132133 132936 43 + . . scaffold43150 GLEAN mRNA 132349 133071 1 + . ID=CGI_10009035; scaffold43150 WUBlastX LINE_L2 132349 133071 129 + . . scaffold43150 GLEAN mRNA 167137 167182 0.544852 - . ID=CGI_10009040; scaffold43150 TRF Tandem_Repeat 167137 167182 92 + . . scaffold43150 GLEAN mRNA 174285 174463 0.544852 - . ID=CGI_10009040; scaffold43150 TRF Tandem_Repeat 174285 174463 331 + . . scaffold43150 GLEAN mRNA 187279 187345 0.998278 + . ID=CGI_10009041; scaffold43150 TRF Tandem_Repeat 187279 187345 125 + . . scaffold43150 GLEAN mRNA 199351 199384 0.998278 + . ID=CGI_10009041; scaffold43150 TRF Tandem_Repeat 199351 199384 68 + . . scaffold43146 GLEAN mRNA 90157 90264 0.644637 + . ID=CGI_10009042; scaffold43146 TRF Tandem_Repeat 90157 90264 171 + . . scaffold43146 GLEAN mRNA 93272 93332 0.644637 + . ID=CGI_10009042; scaffold43146 TRF Tandem_Repeat 93272 93332 99 + . . scaffold43146 GLEAN mRNA 99553 99654 0.644637 + . ID=CGI_10009042; scaffold43146 TRF Tandem_Repeat 99553 99654 150 + . . scaffold43146 GLEAN mRNA 99553 99654 0.644637 + . ID=CGI_10009042; scaffold43146 TRF Tandem_Repeat 99553 99654 161 + . . scaffold43146 GLEAN mRNA 102864 103298 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 102864 103298 55 - . . scaffold43146 GLEAN mRNA 104139 104378 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 104139 104378 84 - . . scaffold43146 GLEAN mRNA 106834 107064 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 106834 107064 86 - . . scaffold43146 GLEAN mRNA 104079 104381 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 104079 104381 77 - . . scaffold43146 GLEAN mRNA 106607 106729 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 106607 106729 41 - . . scaffold43146 GLEAN mRNA 104181 104381 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_Kolobok-IS4 104181 104381 97 - . . scaffold43146 GLEAN mRNA 102864 103028 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_Kolobok-IS4 102864 103028 58 - . . scaffold43146 GLEAN mRNA 105006 105080 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_Kolobok-IS4 105006 105080 32 - . . scaffold43146 GLEAN mRNA 106067 106387 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_Kolobok-IS4 106067 106387 54 - . . scaffold43146 GLEAN mRNA 101062 101268 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 101062 101268 32 + . . scaffold43146 GLEAN mRNA 101285 101386 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 101285 101386 54 + . . scaffold43146 GLEAN mRNA 101388 102017 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 101388 102017 185 + . . scaffold43146 GLEAN mRNA 102025 102570 0.644637 + . ID=CGI_10009042; scaffold43146 WUBlastX DNA_IS4EU 102025 102570 130 + . . scaffold43146 GLEAN mRNA 129089 129126 1 + . ID=CGI_10009045; scaffold43146 TRF Tandem_Repeat 129089 129126 76 + . . scaffold43146 GLEAN mRNA 196277 196303 0.963019 - . ID=CGI_10009047; scaffold43146 WUBlastX LINE_L1 196277 196303 23 + . . scaffold43146 GLEAN mRNA 196378 196467 0.963019 - . ID=CGI_10009047; scaffold43146 WUBlastX LINE_L1 196378 196467 21 + . . scaffold43146 GLEAN mRNA 196864 197766 0.963019 - . ID=CGI_10009047; scaffold43146 WUBlastX LINE_L1-Tx1 196864 197766 218 + . . scaffold43146 GLEAN mRNA 196864 197607 0.963019 - . ID=CGI_10009047; scaffold43146 WUBlastX LINE_L1-Tx1 196864 197607 221 + . . scaffold43146 GLEAN mRNA 197714 198019 0.963019 - . ID=CGI_10009047; scaffold43146 WUBlastX LINE_L1-Tx1 197714 198019 50 + . . scaffold916 GLEAN mRNA 32569 33320 1 - . ID=CGI_10009055; scaffold916 TRF Tandem_Repeat 32569 33320 637 + . . scaffold916 GLEAN mRNA 134985 135164 1 + . ID=CGI_10009060; scaffold916 TRF Tandem_Repeat 134985 135164 252 + . . scaffold891 GLEAN mRNA 31677 31869 0.999607 - . ID=CGI_10009066; scaffold891 TRF Tandem_Repeat 31677 31869 242 + . . scaffold891 GLEAN mRNA 42869 42900 0.998724 + . ID=CGI_10009068; scaffold891 TRF Tandem_Repeat 42869 42900 64 + . . scaffold891 GLEAN mRNA 44501 44545 0.998724 + . ID=CGI_10009068; scaffold891 TRF Tandem_Repeat 44501 44545 90 + . . scaffold891 GLEAN mRNA 49212 49423 1 - . ID=CGI_10009069; scaffold891 TRF Tandem_Repeat 49212 49423 345 + . . scaffold891 GLEAN mRNA 51298 51355 1 - . ID=CGI_10009069; scaffold891 TRF Tandem_Repeat 51298 51355 116 + . . scaffold891 GLEAN mRNA 196196 196400 0.702385 + . ID=CGI_10009074; scaffold891 TRF Tandem_Repeat 196196 196400 261 + . . scaffold891 GLEAN mRNA 191071 191367 0.702385 + . ID=CGI_10009074; scaffold891 WUBlastX DNA_En-Spm 191071 191367 28 + . . scaffold891 GLEAN mRNA 191487 191606 0.702385 + . ID=CGI_10009074; scaffold891 WUBlastX DNA_En-Spm 191487 191606 57 + . . scaffold891 GLEAN mRNA 191942 193129 0.702385 + . ID=CGI_10009074; scaffold891 WUBlastX DNA_En-Spm 191942 193129 312 + . . scaffold891 GLEAN mRNA 191888 192022 0.702385 + . ID=CGI_10009074; scaffold891 WUBlastX DNA_En-Spm 191888 192022 23 + . . scaffold891 GLEAN mRNA 191134 191334 0.702385 + . ID=CGI_10009074; scaffold891 WUBlastX DNA_En-Spm 191134 191334 79 + . . scaffold891 GLEAN mRNA 191508 191648 0.702385 + . ID=CGI_10009074; scaffold891 WUBlastX DNA_En-Spm 191508 191648 46 + . . scaffold891 GLEAN mRNA 191083 191322 0.702385 + . ID=CGI_10009074; scaffold891 WUBlastX DNA_En-Spm 191083 191322 57 + . . scaffold891 GLEAN mRNA 197528 197568 0.702385 + . ID=CGI_10009074; scaffold891 TRF Tandem_Repeat 197528 197568 82 + . . scaffold1616 GLEAN mRNA 59756 60031 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LINE_Penelope 59756 60031 23 - . . scaffold1616 GLEAN mRNA 60431 60730 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LINE_Penelope 60431 60730 46 - . . scaffold1616 GLEAN mRNA 60043 60405 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LINE_Penelope 60043 60405 29 - . . scaffold1616 GLEAN mRNA 62652 63092 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LINE_RTE-X 62652 63092 57 + . . scaffold1616 GLEAN mRNA 60175 60624 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LINE_Penelope 60175 60624 124 - . . scaffold1616 GLEAN mRNA 62658 62984 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LINE_RTE-X 62658 62984 97 + . . scaffold1616 GLEAN mRNA 69901 70584 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LINE_L2 69901 70584 107 - . . scaffold1616 GLEAN mRNA 70024 70686 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LINE_L2 70024 70686 49 - . . scaffold1616 GLEAN mRNA 72922 73506 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LINE_L1-Tx1 72922 73506 31 - . . scaffold1616 GLEAN mRNA 73015 73506 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LINE_L1-Tx1 73015 73506 44 - . . scaffold1616 GLEAN mRNA 87319 87400 0.569133 + . ID=CGI_10009076; scaffold1616 TRF Tandem_Repeat 87319 87400 58 + . . scaffold1616 GLEAN mRNA 91700 93172 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LTR_DIRS 91700 93172 834 + . . scaffold1616 GLEAN mRNA 91504 91638 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LTR_DIRS 91504 91638 57 + . . scaffold1616 GLEAN mRNA 91676 93766 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LTR_DIRS 91676 93766 513 + . . scaffold1616 GLEAN mRNA 91553 92269 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LTR_ERVL 91553 92269 89 + . . scaffold1616 GLEAN mRNA 93787 94353 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LTR_DIRS 93787 94353 264 + . . scaffold1616 GLEAN mRNA 91411 91638 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LTR_DIRS 91411 91638 50 + . . scaffold1616 GLEAN mRNA 100643 101566 0.569133 + . ID=CGI_10009076; scaffold1616 TRF Tandem_Repeat 100643 101566 1266 + . . scaffold1323 GLEAN mRNA 14176 14210 0.182338 + . ID=CGI_10009080; scaffold1323 TRF Tandem_Repeat 14176 14210 70 + . . scaffold1323 GLEAN mRNA 11484 11684 0.182338 + . ID=CGI_10009080; scaffold1323 WUBlastX LINE_Penelope 11484 11684 45 + . . scaffold1323 GLEAN mRNA 12096 12263 0.182338 + . ID=CGI_10009080; scaffold1323 WUBlastX LINE_Penelope 12096 12263 32 + . . scaffold1323 GLEAN mRNA 11645 12085 0.182338 + . ID=CGI_10009080; scaffold1323 WUBlastX LINE_Penelope 11645 12085 133 + . . scaffold1323 GLEAN mRNA 16963 16994 0.182338 + . ID=CGI_10009080; scaffold1323 TRF Tandem_Repeat 16963 16994 64 + . . scaffold1323 GLEAN mRNA 24829 25218 0.182338 + . ID=CGI_10009080; scaffold1323 WUBlastX DNA_Sola 24829 25218 93 - . . scaffold1323 GLEAN mRNA 35642 35686 0.182338 + . ID=CGI_10009080; scaffold1323 TRF Tandem_Repeat 35642 35686 90 + . . scaffold1323 GLEAN mRNA 24829 25119 0.618241 - . ID=CGI_10009081; scaffold1323 WUBlastX DNA_Sola 24829 25218 93 - . . scaffold1323 GLEAN mRNA 71086 71318 0.99865 + . ID=CGI_10009082; scaffold1323 TRF Tandem_Repeat 71086 71318 421 + . . scaffold1323 GLEAN mRNA 80331 80371 0.99865 + . ID=CGI_10009082; scaffold1323 TRF Tandem_Repeat 80331 80371 82 + . . scaffold1323 GLEAN mRNA 75690 75863 0.99865 + . ID=CGI_10009082; scaffold1323 WUBlastX LTR_Ngaro 75690 75863 70 - . . scaffold1323 GLEAN mRNA 75513 75830 0.99865 + . ID=CGI_10009082; scaffold1323 WUBlastX LTR_Ngaro 75513 75830 37 - . . scaffold1323 GLEAN mRNA 75844 76134 0.99865 + . ID=CGI_10009082; scaffold1323 WUBlastX LTR_Ngaro 75844 76134 58 - . . scaffold1323 GLEAN mRNA 78091 78486 0.99865 + . ID=CGI_10009082; scaffold1323 WUBlastX LTR_Ngaro 78091 78486 63 - . . scaffold1323 GLEAN mRNA 77597 78112 0.99865 + . ID=CGI_10009082; scaffold1323 WUBlastX LTR_Ngaro 77597 78112 305 - . . scaffold1323 GLEAN mRNA 76122 76778 0.99865 + . ID=CGI_10009082; scaffold1323 WUBlastX LTR_Ngaro 76122 76778 207 - . . scaffold1323 GLEAN mRNA 70380 71000 0.99865 + . ID=CGI_10009082; scaffold1323 WUBlastX DNA_MuDR 70380 71000 140 - . . scaffold1323 GLEAN mRNA 76762 76821 0.99865 + . ID=CGI_10009082; scaffold1323 WUBlastX LTR_Ngaro 76762 76821 42 - . . scaffold1323 GLEAN mRNA 77405 78091 0.99865 + . ID=CGI_10009082; scaffold1323 WUBlastX LTR_DIRS 77405 78091 69 - . . scaffold1323 GLEAN mRNA 69790 70371 0.99865 + . ID=CGI_10009082; scaffold1323 WUBlastX DNA_MuDR 69790 70371 169 - . . scaffold1323 GLEAN mRNA 83110 83151 0.99865 + . ID=CGI_10009082; scaffold1323 TRF Tandem_Repeat 83110 83151 84 + . . scaffold1323 GLEAN mRNA 85905 85986 0.99865 + . ID=CGI_10009082; scaffold1323 TRF Tandem_Repeat 85905 85986 155 + . . scaffold1323 GLEAN mRNA 87749 87804 0.99865 + . ID=CGI_10009082; scaffold1323 TRF Tandem_Repeat 87749 87804 78 + . . scaffold1323 GLEAN mRNA 157943 157975 0.472258 - . ID=CGI_10009087; scaffold1323 TRF Tandem_Repeat 157943 157975 59 + . . scaffold1323 GLEAN mRNA 167664 169436 0.472258 - . ID=CGI_10009087; scaffold1323 TRF Tandem_Repeat 167664 169436 2009 + . . scaffold1323 GLEAN mRNA 167664 169484 0.472258 - . ID=CGI_10009087; scaffold1323 TRF Tandem_Repeat 167664 169484 2040 + . . scaffold1323 GLEAN mRNA 171748 171781 0.472258 - . ID=CGI_10009087; scaffold1323 TRF Tandem_Repeat 171748 171781 59 + . . scaffold1323 GLEAN mRNA 193820 193917 0.99653 - . ID=CGI_10009088; scaffold1323 TRF Tandem_Repeat 193820 193917 178 + . . scaffold1323 GLEAN mRNA 200518 200603 0.99653 - . ID=CGI_10009088; scaffold1323 TRF Tandem_Repeat 200518 200603 98 + . . scaffold1323 GLEAN mRNA 200507 200586 0.99653 - . ID=CGI_10009088; scaffold1323 TRF Tandem_Repeat 200507 200586 74 + . . scaffold1323 GLEAN mRNA 207883 207946 0.99653 - . ID=CGI_10009088; scaffold1323 TRF Tandem_Repeat 207883 207946 128 + . . scaffold1323 GLEAN mRNA 220330 220354 0.531442 - . ID=CGI_10009089; scaffold1323 TRF Tandem_Repeat 220330 220354 50 + . . scaffold1323 GLEAN mRNA 222228 222401 0.531442 - . ID=CGI_10009089; scaffold1323 TRF Tandem_Repeat 222228 222401 62 + . . scaffold1323 GLEAN mRNA 222416 222863 0.531442 - . ID=CGI_10009089; scaffold1323 TRF Tandem_Repeat 222416 222863 574 + . . scaffold1323 GLEAN mRNA 222536 222884 0.531442 - . ID=CGI_10009089; scaffold1323 TRF Tandem_Repeat 222536 222884 295 + . . scaffold50 GLEAN mRNA 21739 21862 0.744604 + . ID=CGI_10009091; scaffold50 TRF Tandem_Repeat 21739 21862 122 + . . scaffold50 GLEAN mRNA 50833 50916 0.979746 + . ID=CGI_10009092; scaffold50 TRF Tandem_Repeat 50833 50916 145 + . . scaffold50 GLEAN mRNA 78641 78697 0.999281 + . ID=CGI_10009093; scaffold50 TRF Tandem_Repeat 78641 78697 107 + . . scaffold50 GLEAN mRNA 81125 81157 0.999281 + . ID=CGI_10009093; scaffold50 TRF Tandem_Repeat 81125 81157 57 + . . scaffold50 GLEAN mRNA 88708 88754 1 - . ID=CGI_10009094; scaffold50 TRF Tandem_Repeat 88708 88754 76 + . . scaffold50 GLEAN mRNA 93817 93854 1 - . ID=CGI_10009096; scaffold50 TRF Tandem_Repeat 93817 93854 76 + . . scaffold43170 GLEAN mRNA 29566 29808 0.0513125 - . ID=CGI_10009100; scaffold43170 WUBlastX LINE_RTE-BovB 29566 29808 113 + . . scaffold43170 GLEAN mRNA 28705 29094 0.0513125 - . ID=CGI_10009100; scaffold43170 WUBlastX LINE_RTE-BovB 28705 29094 280 + . . scaffold43170 GLEAN mRNA 44407 45212 0.0513125 - . ID=CGI_10009100; scaffold43170 TRF Tandem_Repeat 44407 45212 933 + . . scaffold43170 GLEAN mRNA 70963 71020 0.999976 - . ID=CGI_10009101; scaffold43170 TRF Tandem_Repeat 70963 71020 57 + . . scaffold43170 GLEAN mRNA 115769 115797 0.999676 - . ID=CGI_10009102; scaffold43170 TRF Tandem_Repeat 115769 115797 58 + . . scaffold43170 GLEAN mRNA 116007 116393 0.999676 - . ID=CGI_10009102; scaffold43170 WUBlastX DNA_Zator 116007 116393 86 - . . scaffold43170 GLEAN mRNA 116499 118628 0.999676 - . ID=CGI_10009102; scaffold43170 WUBlastX DNA_Zator 116499 118718 922 - . . scaffold43170 GLEAN mRNA 116010 116609 0.999676 - . ID=CGI_10009102; scaffold43170 WUBlastX DNA_Zator 116010 116609 67 - . . scaffold43170 GLEAN mRNA 115769 115797 0.997994 + . ID=CGI_10009103; scaffold43170 TRF Tandem_Repeat 115769 115797 58 + . . scaffold43170 GLEAN mRNA 116007 116393 0.997994 + . ID=CGI_10009103; scaffold43170 WUBlastX DNA_Zator 116007 116393 86 - . . scaffold43170 GLEAN mRNA 116499 118718 0.997994 + . ID=CGI_10009103; scaffold43170 WUBlastX DNA_Zator 116499 118718 922 - . . scaffold43170 GLEAN mRNA 116010 116609 0.997994 + . ID=CGI_10009103; scaffold43170 WUBlastX DNA_Zator 116010 116609 67 - . . scaffold43170 GLEAN mRNA 130053 131423 0.997994 + . ID=CGI_10009103; scaffold43170 WUBlastX LINE_L1-Tx1 130053 131423 334 + . . scaffold43170 GLEAN mRNA 159363 159448 0.745017 + . ID=CGI_10009104; scaffold43170 TRF Tandem_Repeat 159363 159448 106 + . . scaffold43170 GLEAN mRNA 159363 159448 0.745017 + . ID=CGI_10009104; scaffold43170 TRF Tandem_Repeat 159363 159448 104 + . . scaffold43170 GLEAN mRNA 176001 176044 0.745017 + . ID=CGI_10009104; scaffold43170 TRF Tandem_Repeat 176001 176044 70 + . . scaffold43170 GLEAN mRNA 176014 176047 0.745017 + . ID=CGI_10009104; scaffold43170 TRF Tandem_Repeat 176014 176047 50 + . . scaffold43170 GLEAN mRNA 204603 204656 0.996819 + . ID=CGI_10009105; scaffold43170 TRF Tandem_Repeat 204603 204656 108 + . . scaffold43170 GLEAN mRNA 209028 209107 0.996819 + . ID=CGI_10009105; scaffold43170 TRF Tandem_Repeat 209028 209107 115 + . . scaffold43170 GLEAN mRNA 209028 209107 0.996819 + . ID=CGI_10009105; scaffold43170 TRF Tandem_Repeat 209028 209107 115 + . . scaffold43184 GLEAN mRNA 72964 73031 0.889887 + . ID=CGI_10009112; scaffold43184 TRF Tandem_Repeat 72964 73031 61 + . . scaffold43184 GLEAN mRNA 88723 88886 0.889887 + . ID=CGI_10009112; scaffold43184 TRF Tandem_Repeat 88723 88886 119 + . . scaffold43184 GLEAN mRNA 188494 188561 0.650416 - . ID=CGI_10009117; scaffold43184 TRF Tandem_Repeat 188494 188561 64 + . . scaffold1116 GLEAN mRNA 1360 1388 0.999992 - . ID=CGI_10009119; scaffold1116 TRF Tandem_Repeat 1360 1388 58 + . . scaffold1116 GLEAN mRNA 53457 53572 1 - . ID=CGI_10009121; scaffold1116 TRF Tandem_Repeat 53457 53572 205 + . . scaffold1116 GLEAN mRNA 57934 58003 1 - . ID=CGI_10009121; scaffold1116 TRF Tandem_Repeat 57934 58003 140 + . . scaffold1116 GLEAN mRNA 65105 65159 0.992465 - . ID=CGI_10009123; scaffold1116 TRF Tandem_Repeat 65105 65159 74 + . . scaffold1116 GLEAN mRNA 67508 67545 0.992465 - . ID=CGI_10009123; scaffold1116 TRF Tandem_Repeat 67508 67545 76 + . . scaffold1116 GLEAN mRNA 92760 92826 0.999999 + . ID=CGI_10009126; scaffold1116 TRF Tandem_Repeat 92760 92826 127 + . . scaffold1116 GLEAN mRNA 94197 95143 0.999999 + . ID=CGI_10009126; scaffold1116 TRF Tandem_Repeat 94197 95143 697 + . . scaffold1116 GLEAN mRNA 115091 115140 1 + . ID=CGI_10009129; scaffold1116 TRF Tandem_Repeat 115091 115140 73 + . . scaffold1116 GLEAN mRNA 116467 116887 1 + . ID=CGI_10009129; scaffold1116 TRF Tandem_Repeat 116467 116887 695 + . . scaffold1116 GLEAN mRNA 117107 117323 1 + . ID=CGI_10009129; scaffold1116 TRF Tandem_Repeat 117107 117323 224 + . . scaffold1116 GLEAN mRNA 117117 117323 1 + . ID=CGI_10009129; scaffold1116 TRF Tandem_Repeat 117117 117323 256 + . . scaffold1116 GLEAN mRNA 118929 119145 1 + . ID=CGI_10009129; scaffold1116 TRF Tandem_Repeat 118929 119145 224 + . . scaffold1116 GLEAN mRNA 118939 119145 1 + . ID=CGI_10009129; scaffold1116 TRF Tandem_Repeat 118939 119145 256 + . . scaffold1116 GLEAN mRNA 120906 121624 1 + . ID=CGI_10009129; scaffold1116 TRF Tandem_Repeat 120906 121624 1257 + . . scaffold1116 GLEAN mRNA 147942 148012 1 + . ID=CGI_10009132; scaffold1116 TRF Tandem_Repeat 147942 148012 142 + . . scaffold1116 GLEAN mRNA 160076 160122 0.452122 - . ID=CGI_10009133; scaffold1116 TRF Tandem_Repeat 160076 160122 94 + . . scaffold1116 GLEAN mRNA 173804 173850 0.452122 - . ID=CGI_10009133; scaffold1116 TRF Tandem_Repeat 173804 173850 94 + . . scaffold1116 GLEAN mRNA 175545 175584 0.452122 - . ID=CGI_10009133; scaffold1116 TRF Tandem_Repeat 175545 175584 80 + . . scaffold1116 GLEAN mRNA 211109 211618 1 + . ID=CGI_10009135; scaffold1116 TRF Tandem_Repeat 211109 211618 732 + . . scaffold1116 GLEAN mRNA 212139 212202 1 + . ID=CGI_10009135; scaffold1116 TRF Tandem_Repeat 212139 212202 110 + . . scaffold1116 GLEAN mRNA 212734 213790 1 + . ID=CGI_10009135; scaffold1116 TRF Tandem_Repeat 212734 213790 971 + . . scaffold1143 GLEAN mRNA 111837 111885 0.49583 + . ID=CGI_10009140; scaffold1143 TRF Tandem_Repeat 111837 111885 98 + . . scaffold1143 GLEAN mRNA 114036 114128 0.49583 + . ID=CGI_10009140; scaffold1143 TRF Tandem_Repeat 114036 114128 53 + . . scaffold1143 GLEAN mRNA 123251 123287 0.796524 - . ID=CGI_10009141; scaffold1143 TRF Tandem_Repeat 123251 123287 74 + . . scaffold1143 GLEAN mRNA 123029 123154 0.796524 - . ID=CGI_10009141; scaffold1143 WUBlastX DNA_IS4EU 123029 123154 32 - . . scaffold1143 GLEAN mRNA 123287 123934 0.796524 - . ID=CGI_10009141; scaffold1143 WUBlastX DNA_IS4EU 123287 123934 71 - . . scaffold1143 GLEAN mRNA 123305 124111 0.796524 - . ID=CGI_10009141; scaffold1143 WUBlastX DNA_IS4EU 123305 124111 70 - . . scaffold1143 GLEAN mRNA 123305 123835 0.796524 - . ID=CGI_10009141; scaffold1143 WUBlastX DNA_Kolobok-IS4 123305 123835 87 - . . scaffold1143 GLEAN mRNA 123305 123694 0.796524 - . ID=CGI_10009141; scaffold1143 WUBlastX DNA_IS4EU 123305 123694 96 - . . scaffold1143 GLEAN mRNA 197571 197754 0.998746 - . ID=CGI_10009142; scaffold1143 TRF Tandem_Repeat 197571 197754 289 + . . scaffold1143 GLEAN mRNA 199852 200267 0.998746 - . ID=CGI_10009142; scaffold1143 TRF Tandem_Repeat 199852 200267 710 + . . scaffold1143 GLEAN mRNA 201821 202462 0.998746 - . ID=CGI_10009142; scaffold1143 TRF Tandem_Repeat 201821 202462 138 + . . scaffold1143 GLEAN mRNA 202354 202484 0.998746 - . ID=CGI_10009142; scaffold1143 TRF Tandem_Repeat 202354 202484 113 + . . scaffold1143 GLEAN mRNA 201838 202510 0.998746 - . ID=CGI_10009142; scaffold1143 TRF Tandem_Repeat 201838 202510 869 + . . scaffold1143 GLEAN mRNA 202731 203203 0.998746 - . ID=CGI_10009142; scaffold1143 TRF Tandem_Repeat 202731 203203 806 + . . scaffold951 GLEAN mRNA 10809 10851 0.626883 + . ID=CGI_10009145; scaffold951 TRF Tandem_Repeat 10809 10851 86 + . . scaffold951 GLEAN mRNA 27963 28138 0.52928 + . ID=CGI_10009146; scaffold951 TRF Tandem_Repeat 27963 28138 115 + . . scaffold951 GLEAN mRNA 27693 28333 0.52928 + . ID=CGI_10009146; scaffold951 TRF Tandem_Repeat 27693 28333 370 + . . scaffold951 GLEAN mRNA 34774 35240 0.52928 + . ID=CGI_10009146; scaffold951 TRF Tandem_Repeat 34774 35240 393 + . . scaffold951 GLEAN mRNA 46139 46182 0.799357 - . ID=CGI_10009148; scaffold951 TRF Tandem_Repeat 46139 46182 88 + . . scaffold951 GLEAN mRNA 53845 54040 0.799357 - . ID=CGI_10009148; scaffold951 TRF Tandem_Repeat 53845 54040 266 + . . scaffold951 GLEAN mRNA 61731 62128 0.799357 - . ID=CGI_10009148; scaffold951 TRF Tandem_Repeat 61731 62128 582 + . . scaffold951 GLEAN mRNA 63472 63522 0.799357 - . ID=CGI_10009148; scaffold951 TRF Tandem_Repeat 63472 63522 93 + . . scaffold951 GLEAN mRNA 75044 76741 0.799357 - . ID=CGI_10009148; scaffold951 TRF Tandem_Repeat 75044 76741 942 + . . scaffold951 GLEAN mRNA 75086 76690 0.799357 - . ID=CGI_10009148; scaffold951 TRF Tandem_Repeat 75086 76690 601 + . . scaffold951 GLEAN mRNA 75679 76674 0.799357 - . ID=CGI_10009148; scaffold951 TRF Tandem_Repeat 75679 76674 823 + . . scaffold951 GLEAN mRNA 100816 100871 0.799357 - . ID=CGI_10009148; scaffold951 TRF Tandem_Repeat 100816 100871 112 + . . scaffold951 GLEAN mRNA 101586 101660 0.799357 - . ID=CGI_10009148; scaffold951 TRF Tandem_Repeat 101586 101660 150 + . . scaffold951 GLEAN mRNA 104859 104903 0.799357 - . ID=CGI_10009148; scaffold951 TRF Tandem_Repeat 104859 104903 90 + . . scaffold951 GLEAN mRNA 139591 139656 1 - . ID=CGI_10009150; scaffold951 TRF Tandem_Repeat 139591 139656 132 + . . scaffold951 GLEAN mRNA 152267 152412 0.754735 + . ID=CGI_10009152; scaffold951 TRF Tandem_Repeat 152267 152412 82 + . . scaffold951 GLEAN mRNA 152291 152557 0.754735 + . ID=CGI_10009152; scaffold951 TRF Tandem_Repeat 152291 152557 179 + . . scaffold951 GLEAN mRNA 174637 175239 0.97778 + . ID=CGI_10009156; scaffold951 TRF Tandem_Repeat 174637 175239 954 + . . scaffold951 GLEAN mRNA 183603 183647 1 + . ID=CGI_10009157; scaffold951 TRF Tandem_Repeat 183603 183647 90 + . . scaffold951 GLEAN mRNA 213738 213763 0.471248 - . ID=CGI_10009159; scaffold951 TRF Tandem_Repeat 213738 213763 52 + . . scaffold490 GLEAN mRNA 26236 26283 0.74241 + . ID=CGI_10009160; scaffold490 TRF Tandem_Repeat 26236 26283 96 + . . scaffold490 GLEAN mRNA 54245 54295 1 + . ID=CGI_10009161; scaffold490 TRF Tandem_Repeat 54245 54295 102 + . . scaffold490 GLEAN mRNA 116502 117134 0.717521 + . ID=CGI_10009162; scaffold490 WUBlastX DNA_TcMar-Fot1 116502 117134 139 - . . scaffold490 GLEAN mRNA 117032 117196 0.717521 + . ID=CGI_10009162; scaffold490 WUBlastX DNA_TcMar-Fot1 117032 117196 61 - . . scaffold490 GLEAN mRNA 116523 116996 0.717521 + . ID=CGI_10009162; scaffold490 WUBlastX DNA_TcMar-Fot1 116523 116996 166 - . . scaffold490 GLEAN mRNA 115957 116517 0.717521 + . ID=CGI_10009162; scaffold490 WUBlastX DNA_TcMar-Fot1 115957 116517 255 - . . scaffold490 GLEAN mRNA 115708 116517 0.717521 + . ID=CGI_10009162; scaffold490 WUBlastX DNA_TcMar-Fot1 115708 116517 207 - . . scaffold490 GLEAN mRNA 115371 115556 0.717521 + . ID=CGI_10009162; scaffold490 WUBlastX LTR_Pao 115371 115556 33 - . . scaffold1050 GLEAN mRNA 23556 23584 0.593024 + . ID=CGI_10009165; scaffold1050 TRF Tandem_Repeat 23556 23584 58 + . . scaffold1050 GLEAN mRNA 24424 24500 0.593024 + . ID=CGI_10009165; scaffold1050 TRF Tandem_Repeat 24424 24500 136 + . . scaffold1050 GLEAN mRNA 85298 85448 0.999462 + . ID=CGI_10009169; scaffold1050 TRF Tandem_Repeat 85298 85448 293 + . . scaffold1050 GLEAN mRNA 90118 90217 0.998849 + . ID=CGI_10009170; scaffold1050 TRF Tandem_Repeat 90118 90217 200 + . . scaffold1050 GLEAN mRNA 93205 93236 0.998849 + . ID=CGI_10009170; scaffold1050 TRF Tandem_Repeat 93205 93236 64 + . . scaffold1050 GLEAN mRNA 93771 93804 0.998849 + . ID=CGI_10009170; scaffold1050 TRF Tandem_Repeat 93771 93804 68 + . . scaffold1050 GLEAN mRNA 99198 99230 0.998849 + . ID=CGI_10009170; scaffold1050 TRF Tandem_Repeat 99198 99230 66 + . . scaffold1050 GLEAN mRNA 101889 102190 0.998849 + . ID=CGI_10009170; scaffold1050 TRF Tandem_Repeat 101889 102190 388 + . . scaffold1050 GLEAN mRNA 101889 102196 0.998849 + . ID=CGI_10009170; scaffold1050 TRF Tandem_Repeat 101889 102196 490 + . . scaffold1050 GLEAN mRNA 103487 103832 0.998849 + . ID=CGI_10009170; scaffold1050 TRF Tandem_Repeat 103487 103832 422 + . . scaffold1050 GLEAN mRNA 103471 103832 0.998849 + . ID=CGI_10009170; scaffold1050 TRF Tandem_Repeat 103471 103832 532 + . . scaffold1050 GLEAN mRNA 104689 104724 0.998849 + . ID=CGI_10009170; scaffold1050 TRF Tandem_Repeat 104689 104724 72 + . . scaffold1050 GLEAN mRNA 119405 119446 0.740819 + . ID=CGI_10009172; scaffold1050 TRF Tandem_Repeat 119405 119446 61 + . . scaffold1050 GLEAN mRNA 115644 116192 0.740819 + . ID=CGI_10009172; scaffold1050 WUBlastX LINE_L2 115644 116192 63 + . . scaffold1050 GLEAN mRNA 115644 115997 0.740819 + . ID=CGI_10009172; scaffold1050 WUBlastX LINE_L2 115644 115997 96 + . . scaffold1050 GLEAN mRNA 146193 146226 0.999095 - . ID=CGI_10009176; scaffold1050 TRF Tandem_Repeat 146193 146226 68 + . . scaffold1050 GLEAN mRNA 168027 168071 0.259812 + . ID=CGI_10009177; scaffold1050 TRF Tandem_Repeat 168027 168071 72 + . . scaffold1050 GLEAN mRNA 168027 168074 0.259812 + . ID=CGI_10009177; scaffold1050 TRF Tandem_Repeat 168027 168074 51 + . . scaffold1050 GLEAN mRNA 184507 184607 0.998647 + . ID=CGI_10009179; scaffold1050 TRF Tandem_Repeat 184507 184607 76 + . . scaffold1050 GLEAN mRNA 184619 184791 0.998647 + . ID=CGI_10009179; scaffold1050 TRF Tandem_Repeat 184619 184791 150 + . . scaffold1050 GLEAN mRNA 198970 198997 0.916666 + . ID=CGI_10009180; scaffold1050 TRF Tandem_Repeat 198970 198997 56 + . . scaffold1050 GLEAN mRNA 204124 204294 0.916666 + . ID=CGI_10009180; scaffold1050 TRF Tandem_Repeat 204124 204294 153 + . . scaffold1050 GLEAN mRNA 204124 204294 0.916666 + . ID=CGI_10009180; scaffold1050 TRF Tandem_Repeat 204124 204294 198 + . . scaffold1050 GLEAN mRNA 204293 204480 0.916666 + . ID=CGI_10009180; scaffold1050 TRF Tandem_Repeat 204293 204480 218 + . . scaffold1050 GLEAN mRNA 204363 204480 0.916666 + . ID=CGI_10009180; scaffold1050 TRF Tandem_Repeat 204363 204480 148 + . . scaffold1050 GLEAN mRNA 215008 215352 0.349007 + . ID=CGI_10009182; scaffold1050 WUBlastX DNA_hAT 215008 215352 180 + . . scaffold1050 GLEAN mRNA 215737 216276 0.349007 + . ID=CGI_10009182; scaffold1050 WUBlastX DNA_hAT 215737 216276 126 + . . scaffold1050 GLEAN mRNA 216432 216644 0.349007 + . ID=CGI_10009182; scaffold1050 WUBlastX DNA_hAT 216432 216644 81 + . . scaffold1050 GLEAN mRNA 217824 218045 0.349007 + . ID=CGI_10009182; scaffold1050 WUBlastX DNA_hAT 217824 218045 98 + . . scaffold1050 GLEAN mRNA 216944 217096 0.349007 + . ID=CGI_10009182; scaffold1050 WUBlastX DNA_hAT 216944 217096 40 + . . scaffold1050 GLEAN mRNA 217362 217526 0.349007 + . ID=CGI_10009182; scaffold1050 WUBlastX DNA_hAT 217362 217526 80 + . . scaffold1050 GLEAN mRNA 217320 217526 0.349007 + . ID=CGI_10009182; scaffold1050 WUBlastX DNA_hAT 217320 217526 53 + . . scaffold1411 GLEAN mRNA 473 1539 0.999949 - . ID=CGI_10009183; scaffold1411 TRF Tandem_Repeat 473 1539 1139 + . . scaffold1411 GLEAN mRNA 473 1539 0.999949 - . ID=CGI_10009183; scaffold1411 TRF Tandem_Repeat 473 1539 1083 + . . scaffold1411 GLEAN mRNA 476 1539 0.999949 - . ID=CGI_10009183; scaffold1411 TRF Tandem_Repeat 476 1539 1091 + . . scaffold1411 GLEAN mRNA 12860 12911 0.999949 - . ID=CGI_10009183; scaffold1411 TRF Tandem_Repeat 12860 12911 50 + . . scaffold1411 GLEAN mRNA 14898 14922 0.999949 - . ID=CGI_10009183; scaffold1411 TRF Tandem_Repeat 14898 14922 50 + . . scaffold1411 GLEAN mRNA 36495 36528 0.728594 - . ID=CGI_10009185; scaffold1411 TRF Tandem_Repeat 36495 36528 61 + . . scaffold1411 GLEAN mRNA 72017 72051 0.750194 - . ID=CGI_10009186; scaffold1411 TRF Tandem_Repeat 72017 72051 70 + . . scaffold1411 GLEAN mRNA 73148 73173 0.750194 - . ID=CGI_10009186; scaffold1411 TRF Tandem_Repeat 73148 73173 52 + . . scaffold1411 GLEAN mRNA 80049 80375 0.750194 - . ID=CGI_10009186; scaffold1411 WUBlastX LINE_RTE-X 80049 80375 58 + . . scaffold1411 GLEAN mRNA 79872 80375 0.750194 - . ID=CGI_10009186; scaffold1411 WUBlastX LINE_RTE-X 79872 80375 38 + . . scaffold1411 GLEAN mRNA 83039 83071 0.750194 - . ID=CGI_10009186; scaffold1411 TRF Tandem_Repeat 83039 83071 66 + . . scaffold1411 GLEAN mRNA 128789 128815 0.732019 - . ID=CGI_10009190; scaffold1411 TRF Tandem_Repeat 128789 128815 54 + . . scaffold1411 GLEAN mRNA 128895 128935 0.732019 - . ID=CGI_10009190; scaffold1411 TRF Tandem_Repeat 128895 128935 82 + . . scaffold1411 GLEAN mRNA 138664 138705 0.650467 - . ID=CGI_10009191; scaffold1411 TRF Tandem_Repeat 138664 138705 84 + . . scaffold1411 GLEAN mRNA 140900 140959 0.650467 - . ID=CGI_10009191; scaffold1411 TRF Tandem_Repeat 140900 140959 104 + . . scaffold1411 GLEAN mRNA 141070 141115 0.650467 - . ID=CGI_10009191; scaffold1411 TRF Tandem_Repeat 141070 141115 92 + . . scaffold1411 GLEAN mRNA 155127 155170 0.682042 - . ID=CGI_10009192; scaffold1411 TRF Tandem_Repeat 155127 155170 79 + . . scaffold43182 GLEAN mRNA 32134 32174 0.795977 + . ID=CGI_10009197; scaffold43182 TRF Tandem_Repeat 32134 32174 82 + . . scaffold43182 GLEAN mRNA 38000 38275 0.795977 + . ID=CGI_10009197; scaffold43182 WUBlastX DNA_Sola 38000 38275 20 - . . scaffold43182 GLEAN mRNA 38508 38978 0.795977 + . ID=CGI_10009197; scaffold43182 WUBlastX DNA_Sola 38508 38978 30 - . . scaffold43182 GLEAN mRNA 67448 68250 0.562429 - . ID=CGI_10009198; scaffold43182 TRF Tandem_Repeat 67448 68250 1112 + . . scaffold43182 GLEAN mRNA 72815 72855 0.562429 - . ID=CGI_10009198; scaffold43182 TRF Tandem_Repeat 72815 72855 82 + . . scaffold43182 GLEAN mRNA 86677 86721 0.777756 + . ID=CGI_10009199; scaffold43182 TRF Tandem_Repeat 86677 86721 90 + . . scaffold43182 GLEAN mRNA 99848 100144 0.800679 + . ID=CGI_10009200; scaffold43182 WUBlastX DNA_TcMar-Tc1 99848 100144 65 + . . scaffold43182 GLEAN mRNA 98620 98982 0.800679 + . ID=CGI_10009200; scaffold43182 WUBlastX LTR_Ngaro 98620 98982 62 - . . scaffold43182 GLEAN mRNA 99596 99808 0.800679 + . ID=CGI_10009200; scaffold43182 WUBlastX DNA_TcMar-Tc1 99596 99808 34 + . . scaffold43182 GLEAN mRNA 99638 99811 0.800679 + . ID=CGI_10009200; scaffold43182 WUBlastX DNA_TcMar-Tc1 99638 99811 40 + . . scaffold43182 GLEAN mRNA 110832 110934 0.72893 - . ID=CGI_10009201; scaffold43182 TRF Tandem_Repeat 110832 110934 57 + . . scaffold43182 GLEAN mRNA 111958 112803 0.72893 - . ID=CGI_10009201; scaffold43182 WUBlastX LINE_L2 111958 112803 110 - . . scaffold43182 GLEAN mRNA 148651 148824 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX DNA_Kolobok 148651 148824 76 - . . scaffold43182 GLEAN mRNA 148862 149101 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX DNA_Kolobok 148862 149101 74 - . . scaffold43182 GLEAN mRNA 148412 148804 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX DNA_Kolobok 148412 148804 69 - . . scaffold43182 GLEAN mRNA 178654 178706 0.49983 - . ID=CGI_10009203; scaffold43182 TRF Tandem_Repeat 178654 178706 106 + . . scaffold43182 GLEAN mRNA 166486 166776 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy 166486 166776 111 + . . scaffold43182 GLEAN mRNA 167949 168011 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy-Gmr1 167949 168011 26 + . . scaffold43182 GLEAN mRNA 168273 168383 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy-Gmr1 168273 168383 26 + . . scaffold43182 GLEAN mRNA 166179 166463 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy 166179 166463 24 + . . scaffold43182 GLEAN mRNA 166335 166466 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy 166335 166466 52 + . . scaffold43182 GLEAN mRNA 170172 170225 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy 170172 170225 25 + . . scaffold43182 GLEAN mRNA 166299 166466 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy 166299 166466 51 + . . scaffold43182 GLEAN mRNA 169423 170115 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy 169423 170115 137 + . . scaffold43182 GLEAN mRNA 166266 166469 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy 166266 166469 41 + . . scaffold43182 GLEAN mRNA 168404 168475 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy 168404 168475 30 + . . scaffold43182 GLEAN mRNA 169423 169950 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy 169423 169950 145 + . . scaffold43182 GLEAN mRNA 172153 172671 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LINE_L1-Tx1 172153 172671 140 - . . scaffold43182 GLEAN mRNA 167988 168020 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy 167988 168020 25 + . . scaffold43182 GLEAN mRNA 167708 167899 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy 167708 167899 32 + . . scaffold43182 GLEAN mRNA 166389 166472 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_ERV1 166389 166472 55 + . . scaffold43182 GLEAN mRNA 166546 166821 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX LTR_Gypsy-Cigr 166546 166821 65 + . . scaffold43182 GLEAN mRNA 182534 182601 0.49983 - . ID=CGI_10009203; scaffold43182 TRF Tandem_Repeat 182534 182601 100 + . . scaffold43182 GLEAN mRNA 185331 185381 0.49983 - . ID=CGI_10009203; scaffold43182 TRF Tandem_Repeat 185331 185381 102 + . . scaffold43182 GLEAN mRNA 187518 187877 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX DNA_En-Spm 187518 187877 64 + . . scaffold43182 GLEAN mRNA 187865 189112 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX DNA_En-Spm 187865 189112 570 + . . scaffold43182 GLEAN mRNA 187889 189517 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX DNA_En-Spm 187889 189517 418 + . . scaffold1688 GLEAN mRNA 129692 129733 1 - . ID=CGI_10009210; scaffold1688 TRF Tandem_Repeat 129692 129733 84 + . . scaffold1688 GLEAN mRNA 156333 156373 0.603019 - . ID=CGI_10009212; scaffold1688 TRF Tandem_Repeat 156333 156373 82 + . . scaffold1688 GLEAN mRNA 176900 177954 1 - . ID=CGI_10009214; scaffold1688 TRF Tandem_Repeat 176900 177954 1346 + . . scaffold1688 GLEAN mRNA 188608 188667 0.99935 + . ID=CGI_10009215; scaffold1688 TRF Tandem_Repeat 188608 188667 57 + . . scaffold1688 GLEAN mRNA 188608 188668 0.99935 + . ID=CGI_10009215; scaffold1688 TRF Tandem_Repeat 188608 188668 77 + . . scaffold1688 GLEAN mRNA 188617 188668 0.99935 + . ID=CGI_10009215; scaffold1688 TRF Tandem_Repeat 188617 188668 59 + . . scaffold1245 GLEAN mRNA 10040 10848 0.999947 - . ID=CGI_10009218; scaffold1245 TRF Tandem_Repeat 10040 10848 703 + . . scaffold1245 GLEAN mRNA 18684 18785 0.999947 - . ID=CGI_10009218; scaffold1245 WUBlastX LINE_CR1-L2 18684 18785 55 + . . scaffold1245 GLEAN mRNA 18826 18927 0.999947 - . ID=CGI_10009218; scaffold1245 WUBlastX LINE_CR1-L2 18826 18927 34 + . . scaffold1245 GLEAN mRNA 93414 93419 1 + . ID=CGI_10009225; scaffold1245 TRF Tandem_Repeat 93414 93579 161 + . . scaffold1245 GLEAN mRNA 109715 109780 0.989696 - . ID=CGI_10009226; scaffold1245 TRF Tandem_Repeat 109715 109780 123 + . . scaffold1245 GLEAN mRNA 104370 104651 0.989696 - . ID=CGI_10009226; scaffold1245 WUBlastX DNA_TcMar-Marin 104370 104651 28 - . . scaffold1245 GLEAN mRNA 104370 104831 0.989696 - . ID=CGI_10009226; scaffold1245 WUBlastX DNA_TcMar-Marin 104370 104831 22 - . . scaffold1245 GLEAN mRNA 104433 104660 0.989696 - . ID=CGI_10009226; scaffold1245 WUBlastX DNA_TcMar-Marin 104433 104660 53 - . . scaffold1245 GLEAN mRNA 104150 104362 0.989696 - . ID=CGI_10009226; scaffold1245 WUBlastX DNA_TcMar-Marin 104150 104362 49 - . . scaffold1245 GLEAN mRNA 104517 104654 0.989696 - . ID=CGI_10009226; scaffold1245 WUBlastX DNA_TcMar-Marin 104517 104654 61 - . . scaffold1245 GLEAN mRNA 115954 115999 0.989696 - . ID=CGI_10009226; scaffold1245 TRF Tandem_Repeat 115954 115999 92 + . . scaffold1245 GLEAN mRNA 125302 126239 0.926793 - . ID=CGI_10009227; scaffold1245 TRF Tandem_Repeat 125302 126239 941 + . . scaffold1245 GLEAN mRNA 177575 177663 0.965077 + . ID=CGI_10009229; scaffold1245 TRF Tandem_Repeat 177575 177663 79 + . . scaffold1769 GLEAN mRNA 32877 32943 0.412732 + . ID=CGI_10009233; scaffold1769 TRF Tandem_Repeat 32877 32943 134 + . . scaffold1769 GLEAN mRNA 33253 33304 0.412732 + . ID=CGI_10009233; scaffold1769 TRF Tandem_Repeat 33253 33304 95 + . . scaffold1769 GLEAN mRNA 35797 35836 0.412732 + . ID=CGI_10009233; scaffold1769 TRF Tandem_Repeat 35797 35836 80 + . . scaffold1769 GLEAN mRNA 40578 40620 0.412732 + . ID=CGI_10009233; scaffold1769 TRF Tandem_Repeat 40578 40620 86 + . . scaffold1769 GLEAN mRNA 45382 45409 0.412732 + . ID=CGI_10009233; scaffold1769 TRF Tandem_Repeat 45382 45409 56 + . . scaffold1769 GLEAN mRNA 51847 51924 0.412732 + . ID=CGI_10009233; scaffold1769 TRF Tandem_Repeat 51847 51924 77 + . . scaffold1769 GLEAN mRNA 51848 51906 0.412732 + . ID=CGI_10009233; scaffold1769 TRF Tandem_Repeat 51848 51906 57 + . . scaffold1769 GLEAN mRNA 64380 64430 0.999235 - . ID=CGI_10009234; scaffold1769 TRF Tandem_Repeat 64380 64430 84 + . . scaffold1769 GLEAN mRNA 64784 65358 0.999235 - . ID=CGI_10009234; scaffold1769 TRF Tandem_Repeat 64784 65358 745 + . . scaffold1769 GLEAN mRNA 73512 73903 0.999964 - . ID=CGI_10009235; scaffold1769 TRF Tandem_Repeat 73512 73903 475 + . . scaffold1769 GLEAN mRNA 91038 91286 1 + . ID=CGI_10009237; scaffold1769 WUBlastX LTR_Gypsy 90762 91286 22 + . . scaffold1769 GLEAN mRNA 102392 102652 0.503348 + . ID=CGI_10009238; scaffold1769 WUBlastX LTR_Gypsy 102128 102652 37 + . . scaffold1769 GLEAN mRNA 110117 110206 0.999999 + . ID=CGI_10009239; scaffold1769 TRF Tandem_Repeat 110117 110206 58 + . . scaffold1769 GLEAN mRNA 112094 112413 0.999999 + . ID=CGI_10009239; scaffold1769 TRF Tandem_Repeat 112094 112413 119 + . . scaffold1769 GLEAN mRNA 112092 112413 0.999999 + . ID=CGI_10009239; scaffold1769 TRF Tandem_Repeat 112092 112413 422 + . . scaffold1769 GLEAN mRNA 113104 113143 0.999999 + . ID=CGI_10009239; scaffold1769 TRF Tandem_Repeat 113104 113143 57 + . . scaffold1769 GLEAN mRNA 117923 118711 0.999999 + . ID=CGI_10009239; scaffold1769 TRF Tandem_Repeat 117923 118711 1149 + . . scaffold1769 GLEAN mRNA 123016 123107 0.999999 + . ID=CGI_10009239; scaffold1769 TRF Tandem_Repeat 123016 123107 53 + . . scaffold1769 GLEAN mRNA 138293 138439 0.999507 - . ID=CGI_10009241; scaffold1769 WUBlastX DNA_Kolobok-IS4 138293 138439 36 - . . scaffold1769 GLEAN mRNA 138540 138587 0.999507 - . ID=CGI_10009241; scaffold1769 WUBlastX DNA_IS4EU 138540 138935 69 - . . scaffold1769 GLEAN mRNA 145125 145295 0.937759 - . ID=CGI_10009242; scaffold1769 WUBlastX LINE_L2 145125 145295 26 - . . scaffold1769 GLEAN mRNA 151150 152061 0.937759 - . ID=CGI_10009242; scaffold1769 TRF Tandem_Repeat 151150 152061 930 + . . scaffold1769 GLEAN mRNA 155092 155124 0.937759 - . ID=CGI_10009242; scaffold1769 TRF Tandem_Repeat 155092 155124 66 + . . scaffold1769 GLEAN mRNA 163504 163550 0.937759 - . ID=CGI_10009242; scaffold1769 TRF Tandem_Repeat 163504 163550 94 + . . scaffold1769 GLEAN mRNA 170172 170200 0.937759 - . ID=CGI_10009242; scaffold1769 TRF Tandem_Repeat 170172 170200 58 + . . scaffold1769 GLEAN mRNA 183856 183929 0.937759 - . ID=CGI_10009242; scaffold1769 TRF Tandem_Repeat 183856 183929 130 + . . scaffold1769 GLEAN mRNA 184015 184054 0.937759 - . ID=CGI_10009242; scaffold1769 TRF Tandem_Repeat 184015 184054 80 + . . scaffold1769 GLEAN mRNA 195061 195119 0.990769 + . ID=CGI_10009243; scaffold1769 TRF Tandem_Repeat 195061 195119 118 + . . scaffold1769 GLEAN mRNA 194019 194324 0.990769 + . ID=CGI_10009243; scaffold1769 WUBlastX DNA_Crypton 193746 194324 176 + . . scaffold1769 GLEAN mRNA 202461 202697 0.990769 + . ID=CGI_10009243; scaffold1769 TRF Tandem_Repeat 202461 202697 203 + . . scaffold1769 GLEAN mRNA 204248 204392 0.990769 + . ID=CGI_10009243; scaffold1769 TRF Tandem_Repeat 204248 204392 263 + . . scaffold1769 GLEAN mRNA 207188 207312 0.990769 + . ID=CGI_10009243; scaffold1769 TRF Tandem_Repeat 207188 207312 241 + . . scaffold1769 GLEAN mRNA 196580 196780 0.990769 + . ID=CGI_10009243; scaffold1769 WUBlastX DNA_Crypton 196580 196780 97 + . . scaffold43194 GLEAN mRNA 40303 40464 0.999675 + . ID=CGI_10009249; scaffold43194 TRF Tandem_Repeat 40303 40464 279 + . . scaffold43194 GLEAN mRNA 53395 53431 0.999675 + . ID=CGI_10009250; scaffold43194 TRF Tandem_Repeat 53395 53431 65 + . . scaffold43194 GLEAN mRNA 72835 72886 0.999966 - . ID=CGI_10009252; scaffold43194 TRF Tandem_Repeat 72835 72886 104 + . . scaffold43194 GLEAN mRNA 114134 114201 0.999975 - . ID=CGI_10009254; scaffold43194 TRF Tandem_Repeat 114134 114201 120 + . . scaffold43194 GLEAN mRNA 114493 114541 0.999975 - . ID=CGI_10009254; scaffold43194 TRF Tandem_Repeat 114493 114541 98 + . . scaffold43194 GLEAN mRNA 130738 130777 0.334247 - . ID=CGI_10009255; scaffold43194 TRF Tandem_Repeat 130738 130777 80 + . . scaffold43194 GLEAN mRNA 137005 137101 0.334247 - . ID=CGI_10009255; scaffold43194 TRF Tandem_Repeat 137005 137101 160 + . . scaffold43194 GLEAN mRNA 137007 137093 0.334247 - . ID=CGI_10009255; scaffold43194 TRF Tandem_Repeat 137007 137093 56 + . . scaffold43194 GLEAN mRNA 138285 138330 0.334247 - . ID=CGI_10009255; scaffold43194 TRF Tandem_Repeat 138285 138330 92 + . . scaffold43194 GLEAN mRNA 140679 140718 0.334247 - . ID=CGI_10009255; scaffold43194 TRF Tandem_Repeat 140679 140718 62 + . . scaffold43194 GLEAN mRNA 147085 147173 1 + . ID=CGI_10009256; scaffold43194 TRF Tandem_Repeat 147085 147173 72 + . . scaffold43194 GLEAN mRNA 148767 148821 1 + . ID=CGI_10009256; scaffold43194 TRF Tandem_Repeat 148767 148821 110 + . . scaffold43194 GLEAN mRNA 149603 149637 1 + . ID=CGI_10009256; scaffold43194 TRF Tandem_Repeat 149603 149637 70 + . . scaffold43194 GLEAN mRNA 156483 156527 1 + . ID=CGI_10009256; scaffold43194 TRF Tandem_Repeat 156483 156527 90 + . . scaffold43194 GLEAN mRNA 175759 175861 0.517237 + . ID=CGI_10009257; scaffold43194 TRF Tandem_Repeat 175759 175861 206 + . . scaffold43194 GLEAN mRNA 179921 179950 0.517237 + . ID=CGI_10009257; scaffold43194 TRF Tandem_Repeat 179921 179950 60 + . . scaffold43194 GLEAN mRNA 194414 194441 0.999618 - . ID=CGI_10009258; scaffold43194 TRF Tandem_Repeat 194414 194441 56 + . . scaffold43206 GLEAN mRNA 14796 14926 0.999674 - . ID=CGI_10009261; scaffold43206 TRF Tandem_Repeat 14796 14926 76 + . . scaffold43206 GLEAN mRNA 14722 15000 0.999674 - . ID=CGI_10009261; scaffold43206 TRF Tandem_Repeat 14722 15000 145 + . . scaffold43206 GLEAN mRNA 19982 20122 0.999674 - . ID=CGI_10009261; scaffold43206 TRF Tandem_Repeat 19982 20122 158 + . . scaffold43206 GLEAN mRNA 19970 20122 0.999674 - . ID=CGI_10009261; scaffold43206 TRF Tandem_Repeat 19970 20122 137 + . . scaffold43206 GLEAN mRNA 31525 31569 0.999674 - . ID=CGI_10009261; scaffold43206 TRF Tandem_Repeat 31525 31569 90 + . . scaffold43206 GLEAN mRNA 31803 31844 0.999674 - . ID=CGI_10009261; scaffold43206 TRF Tandem_Repeat 31803 31844 50 + . . scaffold43206 GLEAN mRNA 179940 180219 0.863507 + . ID=CGI_10009273; scaffold43206 TRF Tandem_Repeat 179940 180219 225 + . . scaffold43206 GLEAN mRNA 179897 180219 0.863507 + . ID=CGI_10009273; scaffold43206 TRF Tandem_Repeat 179897 180219 212 + . . scaffold43206 GLEAN mRNA 212244 212800 0.999676 + . ID=CGI_10009278; scaffold43206 TRF Tandem_Repeat 212244 212800 653 + . . scaffold399 GLEAN mRNA 3157 3283 0.999795 + . ID=CGI_10009280; scaffold399 TRF Tandem_Repeat 3157 3283 188 + . . scaffold399 GLEAN mRNA 16426 16464 0.999795 + . ID=CGI_10009280; scaffold399 TRF Tandem_Repeat 16426 16464 69 + . . scaffold399 GLEAN mRNA 20655 21756 0.999795 + . ID=CGI_10009280; scaffold399 TRF Tandem_Repeat 20655 21756 1246 + . . scaffold399 GLEAN mRNA 21925 21967 0.999795 + . ID=CGI_10009280; scaffold399 TRF Tandem_Repeat 21925 21967 59 + . . scaffold399 GLEAN mRNA 32034 32087 0.999795 + . ID=CGI_10009280; scaffold399 TRF Tandem_Repeat 32034 32087 99 + . . scaffold399 GLEAN mRNA 16377 16428 0.999795 + . ID=CGI_10009280; scaffold399 TRF Tandem_Repeat 16377 16428 104 + . . scaffold399 GLEAN mRNA 37748 37823 0.999654 + . ID=CGI_10009281; scaffold399 TRF Tandem_Repeat 37748 37823 145 + . . scaffold399 GLEAN mRNA 46365 46406 0.999654 + . ID=CGI_10009281; scaffold399 TRF Tandem_Repeat 46365 46406 50 + . . scaffold399 GLEAN mRNA 51376 51426 0.999654 + . ID=CGI_10009281; scaffold399 TRF Tandem_Repeat 51376 51426 102 + . . scaffold399 GLEAN mRNA 51520 52211 0.999654 + . ID=CGI_10009281; scaffold399 TRF Tandem_Repeat 51520 52211 1002 + . . scaffold399 GLEAN mRNA 70067 70135 0.999062 + . ID=CGI_10009282; scaffold399 TRF Tandem_Repeat 70067 70135 86 + . . scaffold399 GLEAN mRNA 72689 72720 0.999481 + . ID=CGI_10009283; scaffold399 TRF Tandem_Repeat 72689 72720 57 + . . scaffold399 GLEAN mRNA 72966 73000 0.999481 + . ID=CGI_10009283; scaffold399 TRF Tandem_Repeat 72966 73000 52 + . . scaffold399 GLEAN mRNA 73014 73664 0.999481 + . ID=CGI_10009283; scaffold399 TRF Tandem_Repeat 73014 73664 856 + . . scaffold399 GLEAN mRNA 106899 107095 0.443607 - . ID=CGI_10009285; scaffold399 TRF Tandem_Repeat 106899 107095 286 + . . scaffold399 GLEAN mRNA 115252 115277 0.443607 - . ID=CGI_10009285; scaffold399 TRF Tandem_Repeat 115252 115277 52 + . . scaffold399 GLEAN mRNA 115797 115854 0.443607 - . ID=CGI_10009285; scaffold399 TRF Tandem_Repeat 115797 115854 116 + . . scaffold399 GLEAN mRNA 125995 126031 0.999996 + . ID=CGI_10009286; scaffold399 TRF Tandem_Repeat 125995 126031 74 + . . scaffold399 GLEAN mRNA 171380 171430 0.999414 + . ID=CGI_10009287; scaffold399 TRF Tandem_Repeat 171380 171430 57 + . . scaffold399 GLEAN mRNA 171384 171466 0.999414 + . ID=CGI_10009287; scaffold399 TRF Tandem_Repeat 171384 171466 67 + . . scaffold399 GLEAN mRNA 171428 171476 0.999414 + . ID=CGI_10009287; scaffold399 TRF Tandem_Repeat 171428 171476 98 + . . scaffold399 GLEAN mRNA 218859 219356 0.999351 + . ID=CGI_10009289; scaffold399 WUBlastX LINE_DRE 218859 219356 24 + . . scaffold1873 GLEAN mRNA 50957 50981 0.656652 + . ID=CGI_10009291; scaffold1873 TRF Tandem_Repeat 50957 50981 50 + . . scaffold1873 GLEAN mRNA 56072 56575 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX RC_Helitron 56072 56575 196 - . . scaffold1873 GLEAN mRNA 58839 58892 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX DNA_Helitron 58839 58892 20 - . . scaffold1873 GLEAN mRNA 64736 64792 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX LINE_L1-Tx1 64736 64792 28 + . . scaffold1873 GLEAN mRNA 64771 65220 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX LINE_L1-Tx1 64771 65220 103 + . . scaffold1873 GLEAN mRNA 64858 65385 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX LINE_L1-Tx1 64858 65385 198 + . . scaffold1873 GLEAN mRNA 54964 55191 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX RC_Helitron 54964 55191 59 - . . scaffold1873 GLEAN mRNA 55187 56488 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX RC_Helitron 55187 56488 785 - . . scaffold1873 GLEAN mRNA 56649 57350 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX RC_Helitron 56649 57350 276 - . . scaffold1873 GLEAN mRNA 57353 58015 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX RC_Helitron 57353 58015 437 - . . scaffold1873 GLEAN mRNA 57947 58579 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX RC_Helitron 57947 58579 312 - . . scaffold1873 GLEAN mRNA 54381 54941 0.656652 + . ID=CGI_10009291; scaffold1873 WUBlastX LINE_L2 54381 54941 26 - . . scaffold1873 GLEAN mRNA 71983 72069 0.967714 + . ID=CGI_10009292; scaffold1873 TRF Tandem_Repeat 71983 72069 111 + . . scaffold1873 GLEAN mRNA 71996 72098 0.967714 + . ID=CGI_10009292; scaffold1873 TRF Tandem_Repeat 71996 72098 84 + . . scaffold1873 GLEAN mRNA 72470 72508 0.967714 + . ID=CGI_10009292; scaffold1873 TRF Tandem_Repeat 72470 72508 78 + . . scaffold1873 GLEAN mRNA 72815 73003 0.967714 + . ID=CGI_10009292; scaffold1873 WUBlastX LINE_L1-Tx1 72815 73003 58 - . . scaffold1873 GLEAN mRNA 179460 179558 0.487855 + . ID=CGI_10009300; scaffold1873 WUBlastX LINE_RTE-X 179460 179558 29 - . . scaffold1873 GLEAN mRNA 179249 179443 0.487855 + . ID=CGI_10009300; scaffold1873 WUBlastX LINE_RTE-X 179249 179443 45 - . . scaffold1873 GLEAN mRNA 184159 184219 0.487855 + . ID=CGI_10009300; scaffold1873 TRF Tandem_Repeat 184159 184219 122 + . . scaffold1314 GLEAN mRNA 22146 22199 0.850958 + . ID=CGI_10009302; scaffold1314 TRF Tandem_Repeat 22146 22199 101 + . . scaffold1314 GLEAN mRNA 25705 25731 0.657792 + . ID=CGI_10009303; scaffold1314 TRF Tandem_Repeat 25705 25731 54 + . . scaffold1314 GLEAN mRNA 24488 25030 0.657792 + . ID=CGI_10009303; scaffold1314 WUBlastX DNA_Sola 24488 25030 42 + . . scaffold1314 GLEAN mRNA 25258 25608 0.657792 + . ID=CGI_10009303; scaffold1314 WUBlastX DNA_Sola 25258 25608 48 + . . scaffold1314 GLEAN mRNA 25747 25875 0.657792 + . ID=CGI_10009303; scaffold1314 WUBlastX DNA_Sola 25747 25875 38 + . . scaffold1314 GLEAN mRNA 24317 25072 0.657792 + . ID=CGI_10009303; scaffold1314 WUBlastX DNA_Sola 24317 25072 22 + . . scaffold1314 GLEAN mRNA 109932 109995 0.685915 + . ID=CGI_10009306; scaffold1314 TRF Tandem_Repeat 109932 109995 56 + . . scaffold1314 GLEAN mRNA 117291 117338 0.685915 + . ID=CGI_10009306; scaffold1314 TRF Tandem_Repeat 117291 117338 96 + . . scaffold1314 GLEAN mRNA 131697 131954 0.985091 + . ID=CGI_10009308; scaffold1314 WUBlastX DNA_MuDR 131697 131954 56 + . . scaffold1314 GLEAN mRNA 184155 184192 0.999193 - . ID=CGI_10009309; scaffold1314 TRF Tandem_Repeat 184155 184192 76 + . . scaffold1314 GLEAN mRNA 187253 187343 0.999193 - . ID=CGI_10009309; scaffold1314 TRF Tandem_Repeat 187253 187343 87 + . . scaffold1314 GLEAN mRNA 187579 187628 0.999193 - . ID=CGI_10009309; scaffold1314 TRF Tandem_Repeat 187579 187628 100 + . . scaffold1314 GLEAN mRNA 187806 187831 0.999193 - . ID=CGI_10009309; scaffold1314 TRF Tandem_Repeat 187806 187831 52 + . . scaffold1314 GLEAN mRNA 188896 188966 0.999193 - . ID=CGI_10009309; scaffold1314 TRF Tandem_Repeat 188896 188966 67 + . . scaffold1314 GLEAN mRNA 184979 185398 0.999193 - . ID=CGI_10009309; scaffold1314 WUBlastX LINE_Penelope 184979 185398 69 + . . scaffold188 GLEAN mRNA 12671 13783 0.999204 + . ID=CGI_10009311; scaffold188 WUBlastX DNA_Zator 12671 13783 391 + . . scaffold188 GLEAN mRNA 12383 12556 0.999204 + . ID=CGI_10009311; scaffold188 WUBlastX DNA_Zator 12383 12556 32 + . . scaffold188 GLEAN mRNA 94894 94981 0.733691 - . ID=CGI_10009313; scaffold188 TRF Tandem_Repeat 94894 94981 162 + . . scaffold188 GLEAN mRNA 99093 99137 0.733691 - . ID=CGI_10009313; scaffold188 TRF Tandem_Repeat 99093 99137 90 + . . scaffold188 GLEAN mRNA 187588 187627 0.999922 - . ID=CGI_10009316; scaffold188 TRF Tandem_Repeat 187588 187627 53 + . . scaffold188 GLEAN mRNA 187748 187779 0.999922 - . ID=CGI_10009316; scaffold188 TRF Tandem_Repeat 187748 187779 64 + . . scaffold552 GLEAN mRNA 3587 3644 1 - . ID=CGI_10009317; scaffold552 TRF Tandem_Repeat 3587 3644 107 + . . scaffold552 GLEAN mRNA 38460 38494 0.991079 + . ID=CGI_10009318; scaffold552 TRF Tandem_Repeat 38460 38494 70 + . . scaffold552 GLEAN mRNA 41911 41951 0.991079 + . ID=CGI_10009318; scaffold552 TRF Tandem_Repeat 41911 41951 55 + . . scaffold552 GLEAN mRNA 44873 44946 0.991079 + . ID=CGI_10009318; scaffold552 TRF Tandem_Repeat 44873 44946 148 + . . scaffold552 GLEAN mRNA 49579 49621 0.991706 + . ID=CGI_10009319; scaffold552 TRF Tandem_Repeat 49579 49621 77 + . . scaffold552 GLEAN mRNA 70424 70669 0.367121 + . ID=CGI_10009321; scaffold552 WUBlastX LTR_DIRS 70424 70669 100 + . . scaffold552 GLEAN mRNA 70403 70741 0.367121 + . ID=CGI_10009321; scaffold552 WUBlastX LTR_DIRS 70403 70741 96 + . . scaffold552 GLEAN mRNA 178430 178479 1 + . ID=CGI_10009325; scaffold552 TRF Tandem_Repeat 178430 178479 73 + . . scaffold552 GLEAN mRNA 179598 179645 1 + . ID=CGI_10009325; scaffold552 WUBlastX LINE_RTE-X 179598 179645 21 - . . scaffold552 GLEAN mRNA 179228 179470 1 + . ID=CGI_10009325; scaffold552 WUBlastX LINE_RTE-X 179228 179470 48 - . . scaffold552 GLEAN mRNA 191292 192811 0.997832 - . ID=CGI_10009326; scaffold552 TRF Tandem_Repeat 191292 192811 2170 + . . scaffold552 GLEAN mRNA 192973 193034 0.997832 - . ID=CGI_10009326; scaffold552 TRF Tandem_Repeat 192973 193034 72 + . . scaffold552 GLEAN mRNA 198771 198817 0.99985 + . ID=CGI_10009327; scaffold552 TRF Tandem_Repeat 198771 198817 94 + . . scaffold552 GLEAN mRNA 199605 199801 0.99985 + . ID=CGI_10009327; scaffold552 TRF Tandem_Repeat 199605 199801 234 + . . scaffold43200 GLEAN mRNA 102454 102816 0.928438 + . ID=CGI_10009329; scaffold43200 WUBlastX LINE_L1-Tx1 102454 102816 42 + . . scaffold43200 GLEAN mRNA 117141 117215 0.928438 + . ID=CGI_10009329; scaffold43200 TRF Tandem_Repeat 117141 117215 150 + . . scaffold43200 GLEAN mRNA 124591 125238 0.928438 + . ID=CGI_10009329; scaffold43200 WUBlastX DNA_TcMar-Tc1 124591 125238 230 - . . scaffold43200 GLEAN mRNA 123111 123443 0.928438 + . ID=CGI_10009329; scaffold43200 WUBlastX LINE_R2-Hero 123111 123443 71 + . . scaffold43200 GLEAN mRNA 123225 123443 0.928438 + . ID=CGI_10009329; scaffold43200 WUBlastX LINE_R2-Hero 123225 123443 93 + . . scaffold43200 GLEAN mRNA 123207 123563 0.928438 + . ID=CGI_10009329; scaffold43200 WUBlastX LINE_R2-Hero 123207 123563 75 + . . scaffold43200 GLEAN mRNA 123609 123815 0.928438 + . ID=CGI_10009329; scaffold43200 WUBlastX LINE_R2-Hero 123609 123815 70 + . . scaffold43200 GLEAN mRNA 124591 125613 0.928438 + . ID=CGI_10009329; scaffold43200 WUBlastX DNA_TcMar-Tc1 124591 125613 226 - . . scaffold43200 GLEAN mRNA 226918 227043 0.999354 - . ID=CGI_10009333; scaffold43200 TRF Tandem_Repeat 226918 227043 57 + . . scaffold43200 GLEAN mRNA 226905 228285 0.999354 - . ID=CGI_10009333; scaffold43200 TRF Tandem_Repeat 226905 228285 1758 + . . scaffold1163 GLEAN mRNA 88539 88713 1 + . ID=CGI_10009339; scaffold1163 TRF Tandem_Repeat 88539 88713 194 + . . scaffold1163 GLEAN mRNA 91769 92145 0.999996 - . ID=CGI_10009340; scaffold1163 TRF Tandem_Repeat 91769 92145 532 + . . scaffold1163 GLEAN mRNA 91856 92074 0.999996 - . ID=CGI_10009340; scaffold1163 TRF Tandem_Repeat 91856 92074 74 + . . scaffold1163 GLEAN mRNA 129760 130100 0.99922 - . ID=CGI_10009343; scaffold1163 TRF Tandem_Repeat 129760 130100 343 + . . scaffold1163 GLEAN mRNA 129760 130121 0.99922 - . ID=CGI_10009343; scaffold1163 TRF Tandem_Repeat 129760 130121 370 + . . scaffold1163 GLEAN mRNA 131466 131807 0.99922 - . ID=CGI_10009343; scaffold1163 TRF Tandem_Repeat 131466 131807 461 + . . scaffold1163 GLEAN mRNA 134051 134498 0.99922 - . ID=CGI_10009343; scaffold1163 TRF Tandem_Repeat 134051 134498 717 + . . scaffold1163 GLEAN mRNA 141255 141450 0.999949 + . ID=CGI_10009344; scaffold1163 TRF Tandem_Repeat 141255 141450 329 + . . scaffold1163 GLEAN mRNA 147752 147801 0.999777 - . ID=CGI_10009345; scaffold1163 TRF Tandem_Repeat 147752 147801 100 + . . scaffold1163 GLEAN mRNA 147825 147878 0.999777 - . ID=CGI_10009345; scaffold1163 TRF Tandem_Repeat 147825 147878 54 + . . scaffold1163 GLEAN mRNA 149637 151841 0.999777 - . ID=CGI_10009345; scaffold1163 TRF Tandem_Repeat 149637 151841 3104 + . . scaffold1163 GLEAN mRNA 149637 151841 0.999994 + . ID=CGI_10009346; scaffold1163 TRF Tandem_Repeat 149637 151841 3104 + . . scaffold1163 GLEAN mRNA 170967 171000 0.981214 - . ID=CGI_10009349; scaffold1163 TRF Tandem_Repeat 170967 171000 68 + . . scaffold1163 GLEAN mRNA 172083 172125 0.981214 - . ID=CGI_10009349; scaffold1163 TRF Tandem_Repeat 172083 172125 86 + . . scaffold1163 GLEAN mRNA 187014 187044 0.990122 - . ID=CGI_10009351; scaffold1163 TRF Tandem_Repeat 187014 187044 62 + . . scaffold1163 GLEAN mRNA 187775 187820 0.990122 - . ID=CGI_10009351; scaffold1163 TRF Tandem_Repeat 187775 187820 76 + . . scaffold1163 GLEAN mRNA 188657 189190 0.990122 - . ID=CGI_10009351; scaffold1163 WUBlastX LINE_L1 188657 189190 105 + . . scaffold1163 GLEAN mRNA 188744 189298 0.990122 - . ID=CGI_10009351; scaffold1163 WUBlastX LINE_L1-Tx1 188744 189298 397 + . . scaffold1163 GLEAN mRNA 189235 191037 0.990122 - . ID=CGI_10009351; scaffold1163 WUBlastX LINE_L1-Tx1 189235 191037 549 + . . scaffold1163 GLEAN mRNA 199861 199898 0.990122 - . ID=CGI_10009351; scaffold1163 TRF Tandem_Repeat 199861 199898 76 + . . scaffold1163 GLEAN mRNA 202986 203770 0.990122 - . ID=CGI_10009351; scaffold1163 TRF Tandem_Repeat 202986 203770 843 + . . scaffold1163 GLEAN mRNA 200485 200787 0.990122 - . ID=CGI_10009351; scaffold1163 WUBlastX LINE_RTE-BovB 200485 200787 21 + . . scaffold1163 GLEAN mRNA 200150 200284 0.990122 - . ID=CGI_10009351; scaffold1163 WUBlastX LINE_RTE-BovB 200150 200284 28 + . . scaffold1163 GLEAN mRNA 198290 198580 0.990122 - . ID=CGI_10009351; scaffold1163 WUBlastX LINE_RTE-X 198290 198580 93 - . . scaffold1163 GLEAN mRNA 198389 198616 0.990122 - . ID=CGI_10009351; scaffold1163 WUBlastX LINE_RTE-X 198389 198616 43 - . . scaffold1163 GLEAN mRNA 198380 198577 0.990122 - . ID=CGI_10009351; scaffold1163 WUBlastX LINE_RTE-X 198380 198577 129 - . . scaffold1163 GLEAN mRNA 216573 216610 0.999949 - . ID=CGI_10009352; scaffold1163 TRF Tandem_Repeat 216573 216610 76 + . . scaffold43208 GLEAN mRNA 2328 2411 0.572774 - . ID=CGI_10009353; scaffold43208 TRF Tandem_Repeat 2328 2411 105 + . . scaffold43208 GLEAN mRNA 2328 2411 0.572774 - . ID=CGI_10009353; scaffold43208 TRF Tandem_Repeat 2328 2411 105 + . . scaffold43208 GLEAN mRNA 3027 3211 0.572774 - . ID=CGI_10009353; scaffold43208 TRF Tandem_Repeat 3027 3211 289 + . . scaffold43208 GLEAN mRNA 3773 3893 0.572774 - . ID=CGI_10009353; scaffold43208 TRF Tandem_Repeat 3773 3893 217 + . . scaffold43208 GLEAN mRNA 5455 5509 0.572774 - . ID=CGI_10009353; scaffold43208 TRF Tandem_Repeat 5455 5509 110 + . . scaffold43208 GLEAN mRNA 14038 14071 0.572774 - . ID=CGI_10009353; scaffold43208 TRF Tandem_Repeat 14038 14071 68 + . . scaffold43208 GLEAN mRNA 14141 14174 0.572774 - . ID=CGI_10009353; scaffold43208 TRF Tandem_Repeat 14141 14174 68 + . . scaffold43208 GLEAN mRNA 14657 16617 0.572774 - . ID=CGI_10009353; scaffold43208 TRF Tandem_Repeat 14657 16617 438 + . . scaffold43208 GLEAN mRNA 20170 20229 0.569221 - . ID=CGI_10009354; scaffold43208 TRF Tandem_Repeat 20170 20229 111 + . . scaffold43208 GLEAN mRNA 20406 20486 0.569221 - . ID=CGI_10009354; scaffold43208 TRF Tandem_Repeat 20406 20486 58 + . . scaffold43208 GLEAN mRNA 20406 20489 0.569221 - . ID=CGI_10009354; scaffold43208 TRF Tandem_Repeat 20406 20489 70 + . . scaffold43208 GLEAN mRNA 28557 28583 0.569221 - . ID=CGI_10009354; scaffold43208 TRF Tandem_Repeat 28557 28583 54 + . . scaffold43208 GLEAN mRNA 34517 34552 0.569221 - . ID=CGI_10009354; scaffold43208 TRF Tandem_Repeat 34517 34552 72 + . . scaffold43208 GLEAN mRNA 34661 34705 0.569221 - . ID=CGI_10009354; scaffold43208 TRF Tandem_Repeat 34661 34705 83 + . . scaffold43208 GLEAN mRNA 39997 40049 0.569221 - . ID=CGI_10009354; scaffold43208 TRF Tandem_Repeat 39997 40049 90 + . . scaffold43208 GLEAN mRNA 96086 96141 1 + . ID=CGI_10009357; scaffold43208 TRF Tandem_Repeat 96086 96141 112 + . . scaffold43208 GLEAN mRNA 96657 96690 1 + . ID=CGI_10009357; scaffold43208 TRF Tandem_Repeat 96657 96690 68 + . . scaffold43208 GLEAN mRNA 125218 125276 0.962351 + . ID=CGI_10009358; scaffold43208 TRF Tandem_Repeat 125218 125276 118 + . . scaffold43208 GLEAN mRNA 125370 125424 0.962351 + . ID=CGI_10009358; scaffold43208 TRF Tandem_Repeat 125370 125424 110 + . . scaffold43208 GLEAN mRNA 128773 128832 0.962351 + . ID=CGI_10009358; scaffold43208 TRF Tandem_Repeat 128773 128832 54 + . . scaffold43208 GLEAN mRNA 132609 132787 0.962351 + . ID=CGI_10009358; scaffold43208 TRF Tandem_Repeat 132609 132787 160 + . . scaffold43208 GLEAN mRNA 133152 133194 0.962351 + . ID=CGI_10009358; scaffold43208 TRF Tandem_Repeat 133152 133194 86 + . . scaffold43208 GLEAN mRNA 134291 134360 0.962351 + . ID=CGI_10009358; scaffold43208 TRF Tandem_Repeat 134291 134360 79 + . . scaffold43208 GLEAN mRNA 138882 138927 0.962351 + . ID=CGI_10009358; scaffold43208 TRF Tandem_Repeat 138882 138927 92 + . . scaffold43208 GLEAN mRNA 139582 139638 0.962351 + . ID=CGI_10009358; scaffold43208 TRF Tandem_Repeat 139582 139638 114 + . . scaffold43208 GLEAN mRNA 135228 136346 0.962351 + . ID=CGI_10009358; scaffold43208 WUBlastX LINE_RTE-X 135228 136346 407 - . . scaffold43208 GLEAN mRNA 135114 136430 0.962351 + . ID=CGI_10009358; scaffold43208 WUBlastX LINE_RTE-X 135114 136430 341 - . . scaffold43208 GLEAN mRNA 155377 155417 0.962351 + . ID=CGI_10009358; scaffold43208 TRF Tandem_Repeat 155377 155417 82 + . . scaffold43208 GLEAN mRNA 155611 155643 0.962351 + . ID=CGI_10009358; scaffold43208 TRF Tandem_Repeat 155611 155643 66 + . . scaffold43208 GLEAN mRNA 211438 211481 0.999074 + . ID=CGI_10009359; scaffold43208 TRF Tandem_Repeat 211438 211481 88 + . . scaffold43208 GLEAN mRNA 222468 222533 0.999074 + . ID=CGI_10009359; scaffold43208 TRF Tandem_Repeat 222468 222533 132 + . . scaffold43208 GLEAN mRNA 222748 222777 0.999074 + . ID=CGI_10009359; scaffold43208 TRF Tandem_Repeat 222748 222777 60 + . . scaffold1035 GLEAN mRNA 161709 161819 0.999666 + . ID=CGI_10009365; scaffold1035 WUBlastX DNA_Kolobok 161709 161819 66 - . . scaffold1035 GLEAN mRNA 161685 161924 0.999666 + . ID=CGI_10009365; scaffold1035 WUBlastX DNA_Kolobok 161685 161924 27 - . . scaffold993 GLEAN mRNA 112957 112983 1 + . ID=CGI_10009373; scaffold993 TRF Tandem_Repeat 112957 112983 54 + . . scaffold993 GLEAN mRNA 132116 132158 1 + . ID=CGI_10009374; scaffold993 TRF Tandem_Repeat 132116 132158 56 + . . scaffold993 GLEAN mRNA 169066 169095 0.999333 + . ID=CGI_10009377; scaffold993 TRF Tandem_Repeat 169066 169095 51 + . . scaffold993 GLEAN mRNA 211844 211874 0.654465 + . ID=CGI_10009379; scaffold993 TRF Tandem_Repeat 211844 211874 62 + . . scaffold993 GLEAN mRNA 218132 218184 0.999676 + . ID=CGI_10009380; scaffold993 TRF Tandem_Repeat 218132 218184 106 + . . scaffold76 GLEAN mRNA 56598 56684 0.99992 - . ID=CGI_10009398; scaffold76 TRF Tandem_Repeat 56598 56684 79 + . . scaffold76 GLEAN mRNA 57898 57941 0.99992 - . ID=CGI_10009398; scaffold76 TRF Tandem_Repeat 57898 57941 88 + . . scaffold76 GLEAN mRNA 61216 62099 0.99992 - . ID=CGI_10009398; scaffold76 TRF Tandem_Repeat 61216 62099 1140 + . . scaffold76 GLEAN mRNA 62837 62896 0.99992 - . ID=CGI_10009398; scaffold76 TRF Tandem_Repeat 62837 62896 102 + . . scaffold76 GLEAN mRNA 62962 63027 0.99992 - . ID=CGI_10009398; scaffold76 TRF Tandem_Repeat 62962 63027 71 + . . scaffold76 GLEAN mRNA 115867 115920 0.999744 + . ID=CGI_10009399; scaffold76 TRF Tandem_Repeat 115867 115920 99 + . . scaffold76 GLEAN mRNA 118975 119020 0.613509 - . ID=CGI_10009400; scaffold76 TRF Tandem_Repeat 118975 119020 74 + . . scaffold76 GLEAN mRNA 125996 126112 0.613509 - . ID=CGI_10009400; scaffold76 TRF Tandem_Repeat 125996 126112 80 + . . scaffold76 GLEAN mRNA 131034 132041 0.613509 - . ID=CGI_10009400; scaffold76 TRF Tandem_Repeat 131034 132041 1152 + . . scaffold76 GLEAN mRNA 183471 183527 0.0674883 + . ID=CGI_10009404; scaffold76 TRF Tandem_Repeat 183471 183527 53 + . . scaffold76 GLEAN mRNA 184430 184467 0.0674883 + . ID=CGI_10009404; scaffold76 TRF Tandem_Repeat 184430 184467 76 + . . scaffold76 GLEAN mRNA 187052 187098 0.0674883 + . ID=CGI_10009404; scaffold76 TRF Tandem_Repeat 187052 187098 94 + . . scaffold76 GLEAN mRNA 190434 190489 0.0674883 + . ID=CGI_10009404; scaffold76 TRF Tandem_Repeat 190434 190489 58 + . . scaffold76 GLEAN mRNA 190410 190486 0.0674883 + . ID=CGI_10009404; scaffold76 TRF Tandem_Repeat 190410 190486 57 + . . scaffold76 GLEAN mRNA 200763 200808 0.0674883 + . ID=CGI_10009404; scaffold76 TRF Tandem_Repeat 200763 200808 92 + . . scaffold76 GLEAN mRNA 204225 204260 0.0674883 + . ID=CGI_10009404; scaffold76 TRF Tandem_Repeat 204225 204260 63 + . . scaffold76 GLEAN mRNA 223996 224055 0.999675 - . ID=CGI_10009406; scaffold76 TRF Tandem_Repeat 223996 224055 120 + . . scaffold76 GLEAN mRNA 227718 227993 0.999675 - . ID=CGI_10009406; scaffold76 WUBlastX LINE_RTE-X 227718 227993 40 + . . scaffold76 GLEAN mRNA 227718 227921 0.999675 - . ID=CGI_10009406; scaffold76 WUBlastX LINE_RTE-X 227718 227921 52 + . . scaffold76 GLEAN mRNA 225684 225980 0.999675 - . ID=CGI_10009406; scaffold76 WUBlastX LINE_RTE-X 225684 225980 25 + . . scaffold76 GLEAN mRNA 227550 227885 0.999675 - . ID=CGI_10009406; scaffold76 WUBlastX LINE_RTE-X 227550 227885 65 + . . scaffold116 GLEAN mRNA 13481 13532 0.539822 + . ID=CGI_10009408; scaffold116 TRF Tandem_Repeat 13481 13532 59 + . . scaffold116 GLEAN mRNA 33911 34084 1 - . ID=CGI_10009410; scaffold116 WUBlastX LTR_Gypsy 33911 34084 28 - . . scaffold116 GLEAN mRNA 33800 34009 1 - . ID=CGI_10009410; scaffold116 WUBlastX LTR_Gypsy-Cigr 33794 34009 33 - . . scaffold116 GLEAN mRNA 34644 34832 0.733461 - . ID=CGI_10009411; scaffold116 WUBlastX LTR_Gypsy 34644 34946 117 - . . scaffold116 GLEAN mRNA 34587 34832 0.733461 - . ID=CGI_10009411; scaffold116 WUBlastX LTR_Gypsy-Cigr 34587 34949 97 - . . scaffold116 GLEAN mRNA 133523 133587 0.648538 + . ID=CGI_10009417; scaffold116 TRF Tandem_Repeat 133523 133587 85 + . . scaffold116 GLEAN mRNA 175307 175361 0.682394 + . ID=CGI_10009420; scaffold116 TRF Tandem_Repeat 175307 175361 85 + . . scaffold116 GLEAN mRNA 178022 178285 0.682394 + . ID=CGI_10009420; scaffold116 TRF Tandem_Repeat 178022 178285 395 + . . scaffold116 GLEAN mRNA 200069 201417 0.8905 - . ID=CGI_10009421; scaffold116 TRF Tandem_Repeat 200069 201417 644 + . . scaffold116 GLEAN mRNA 200083 200998 0.8905 - . ID=CGI_10009421; scaffold116 TRF Tandem_Repeat 200083 200998 258 + . . scaffold116 GLEAN mRNA 200227 200699 0.8905 - . ID=CGI_10009421; scaffold116 TRF Tandem_Repeat 200227 200699 389 + . . scaffold116 GLEAN mRNA 204004 204162 0.8905 - . ID=CGI_10009421; scaffold116 TRF Tandem_Repeat 204004 204162 282 + . . scaffold116 GLEAN mRNA 205781 206215 0.8905 - . ID=CGI_10009421; scaffold116 TRF Tandem_Repeat 205781 206215 692 + . . scaffold116 GLEAN mRNA 212496 212747 0.8905 - . ID=CGI_10009421; scaffold116 WUBlastX LINE_RTE-X 212496 212747 109 + . . scaffold116 GLEAN mRNA 212216 212386 0.8905 - . ID=CGI_10009421; scaffold116 WUBlastX LINE_RTE-X 212216 212386 39 + . . scaffold116 GLEAN mRNA 212328 212651 0.8905 - . ID=CGI_10009421; scaffold116 WUBlastX LINE_RTE-X 212328 212651 68 + . . scaffold116 GLEAN mRNA 212436 212777 0.8905 - . ID=CGI_10009421; scaffold116 WUBlastX LINE_RTE-X 212436 212777 102 + . . scaffold116 GLEAN mRNA 215975 216524 0.8905 - . ID=CGI_10009421; scaffold116 TRF Tandem_Repeat 215975 216524 469 + . . scaffold116 GLEAN mRNA 215975 216524 0.8905 - . ID=CGI_10009421; scaffold116 TRF Tandem_Repeat 215975 216524 482 + . . scaffold116 GLEAN mRNA 215975 216457 0.8905 - . ID=CGI_10009421; scaffold116 TRF Tandem_Repeat 215975 216457 462 + . . scaffold116 GLEAN mRNA 216479 216560 0.8905 - . ID=CGI_10009421; scaffold116 TRF Tandem_Repeat 216479 216560 92 + . . scaffold1100 GLEAN mRNA 1015 1046 0.889838 - . ID=CGI_10009423; scaffold1100 TRF Tandem_Repeat 1015 1046 64 + . . scaffold1100 GLEAN mRNA 1162 1465 0.889838 - . ID=CGI_10009423; scaffold1100 TRF Tandem_Repeat 1162 1465 219 + . . scaffold1100 GLEAN mRNA 1163 1465 0.889838 - . ID=CGI_10009423; scaffold1100 TRF Tandem_Repeat 1163 1465 285 + . . scaffold1100 GLEAN mRNA 2370 2678 0.889838 - . ID=CGI_10009423; scaffold1100 TRF Tandem_Repeat 2370 2678 236 + . . scaffold1100 GLEAN mRNA 2370 2678 0.889838 - . ID=CGI_10009423; scaffold1100 TRF Tandem_Repeat 2370 2678 311 + . . scaffold1100 GLEAN mRNA 16447 17264 0.999803 + . ID=CGI_10009424; scaffold1100 TRF Tandem_Repeat 16447 17264 997 + . . scaffold1100 GLEAN mRNA 17481 18079 0.999803 + . ID=CGI_10009424; scaffold1100 TRF Tandem_Repeat 17481 18079 905 + . . scaffold1100 GLEAN mRNA 17481 18079 0.999803 + . ID=CGI_10009424; scaffold1100 TRF Tandem_Repeat 17481 18079 967 + . . scaffold1100 GLEAN mRNA 20494 20686 0.999803 + . ID=CGI_10009424; scaffold1100 TRF Tandem_Repeat 20494 20686 248 + . . scaffold1100 GLEAN mRNA 16308 17264 0.999803 + . ID=CGI_10009424; scaffold1100 TRF Tandem_Repeat 16308 17264 1087 + . . scaffold1100 GLEAN mRNA 26319 27091 0.988736 - . ID=CGI_10009425; scaffold1100 TRF Tandem_Repeat 26319 27091 994 + . . scaffold1100 GLEAN mRNA 28144 28778 0.988736 - . ID=CGI_10009425; scaffold1100 TRF Tandem_Repeat 28144 28778 1055 + . . scaffold1100 GLEAN mRNA 28144 28778 0.988736 - . ID=CGI_10009425; scaffold1100 TRF Tandem_Repeat 28144 28778 1180 + . . scaffold1100 GLEAN mRNA 30683 30925 0.988736 - . ID=CGI_10009425; scaffold1100 TRF Tandem_Repeat 30683 30925 112 + . . scaffold1100 GLEAN mRNA 38165 38740 0.9999 + . ID=CGI_10009426; scaffold1100 WUBlastX LTR_Pao 38165 38740 54 + . . scaffold1100 GLEAN mRNA 51428 51475 0.999992 - . ID=CGI_10009427; scaffold1100 TRF Tandem_Repeat 51428 51475 69 + . . scaffold1100 GLEAN mRNA 131621 131674 0.999676 + . ID=CGI_10009432; scaffold1100 TRF Tandem_Repeat 131621 131674 108 + . . scaffold1100 GLEAN mRNA 148489 148533 0.999676 - . ID=CGI_10009433; scaffold1100 TRF Tandem_Repeat 148489 148533 90 + . . scaffold1100 GLEAN mRNA 153557 154634 0.999929 + . ID=CGI_10009434; scaffold1100 TRF Tandem_Repeat 153557 154634 1599 + . . scaffold1100 GLEAN mRNA 202953 203014 0.999351 - . ID=CGI_10009438; scaffold1100 TRF Tandem_Repeat 202953 203014 99 + . . scaffold43210 GLEAN mRNA 19866 19939 0.999714 + . ID=CGI_10009439; scaffold43210 TRF Tandem_Repeat 19866 19939 139 + . . scaffold43210 GLEAN mRNA 37469 37499 0.803019 + . ID=CGI_10009440; scaffold43210 TRF Tandem_Repeat 37469 37499 62 + . . scaffold43210 GLEAN mRNA 44927 45008 0.803019 + . ID=CGI_10009440; scaffold43210 TRF Tandem_Repeat 44927 45008 62 + . . scaffold43210 GLEAN mRNA 50422 50488 0.803019 + . ID=CGI_10009440; scaffold43210 TRF Tandem_Repeat 50422 50488 116 + . . scaffold43210 GLEAN mRNA 68794 68834 0.999972 + . ID=CGI_10009441; scaffold43210 TRF Tandem_Repeat 68794 68834 82 + . . scaffold43210 GLEAN mRNA 71134 71165 0.999972 + . ID=CGI_10009441; scaffold43210 TRF Tandem_Repeat 71134 71165 55 + . . scaffold43210 GLEAN mRNA 71863 71914 0.999972 + . ID=CGI_10009441; scaffold43210 TRF Tandem_Repeat 71863 71914 104 + . . scaffold43210 GLEAN mRNA 71914 71943 0.999972 + . ID=CGI_10009441; scaffold43210 TRF Tandem_Repeat 71914 71943 60 + . . scaffold43210 GLEAN mRNA 72297 72357 0.999972 + . ID=CGI_10009441; scaffold43210 TRF Tandem_Repeat 72297 72357 79 + . . scaffold43210 GLEAN mRNA 73087 73123 0.999972 + . ID=CGI_10009441; scaffold43210 TRF Tandem_Repeat 73087 73123 74 + . . scaffold43210 GLEAN mRNA 76859 76927 0.999972 + . ID=CGI_10009441; scaffold43210 TRF Tandem_Repeat 76859 76927 88 + . . scaffold43210 GLEAN mRNA 87403 87475 0.681651 - . ID=CGI_10009442; scaffold43210 TRF Tandem_Repeat 87403 87475 56 + . . scaffold43210 GLEAN mRNA 99314 99379 0.681651 - . ID=CGI_10009442; scaffold43210 TRF Tandem_Repeat 99314 99379 132 + . . scaffold43210 GLEAN mRNA 100264 100297 0.681651 - . ID=CGI_10009442; scaffold43210 TRF Tandem_Repeat 100264 100297 68 + . . scaffold43210 GLEAN mRNA 110758 110976 0.937811 - . ID=CGI_10009443; scaffold43210 TRF Tandem_Repeat 110758 110976 321 + . . scaffold43210 GLEAN mRNA 112105 112168 0.937811 - . ID=CGI_10009443; scaffold43210 TRF Tandem_Repeat 112105 112168 85 + . . scaffold43210 GLEAN mRNA 139959 140217 0.999676 - . ID=CGI_10009445; scaffold43210 TRF Tandem_Repeat 139959 140217 452 + . . scaffold43210 GLEAN mRNA 155139 155167 0.99409 + . ID=CGI_10009446; scaffold43210 TRF Tandem_Repeat 155139 155167 51 + . . scaffold43210 GLEAN mRNA 155653 155689 0.99409 + . ID=CGI_10009446; scaffold43210 TRF Tandem_Repeat 155653 155689 74 + . . scaffold43210 GLEAN mRNA 162150 162407 0.985072 + . ID=CGI_10009447; scaffold43210 TRF Tandem_Repeat 162150 162407 317 + . . scaffold43210 GLEAN mRNA 183870 184007 0.693179 - . ID=CGI_10009448; scaffold43210 WUBlastX LINE_RTE-BovB 183870 184007 70 - . . scaffold43210 GLEAN mRNA 190936 191289 0.693179 - . ID=CGI_10009448; scaffold43210 WUBlastX DNA_TcMar-Tc1 190936 191289 186 + . . scaffold43210 GLEAN mRNA 191253 191687 0.693179 - . ID=CGI_10009448; scaffold43210 WUBlastX DNA_TcMar-Tc1 191253 191687 191 + . . scaffold43210 GLEAN mRNA 190706 190918 0.693179 - . ID=CGI_10009448; scaffold43210 WUBlastX DNA_TcMar-Tc1 190706 190918 53 + . . scaffold1330 GLEAN mRNA 22747 23309 1 + . ID=CGI_10009450; scaffold1330 TRF Tandem_Repeat 22747 23309 411 + . . scaffold1330 GLEAN mRNA 22765 23309 1 + . ID=CGI_10009450; scaffold1330 TRF Tandem_Repeat 22765 23309 618 + . . scaffold1330 GLEAN mRNA 23399 23569 1 + . ID=CGI_10009450; scaffold1330 TRF Tandem_Repeat 23399 23569 189 + . . scaffold1330 GLEAN mRNA 23407 23569 1 + . ID=CGI_10009450; scaffold1330 TRF Tandem_Repeat 23407 23569 152 + . . scaffold1330 GLEAN mRNA 23407 23586 1 + . ID=CGI_10009450; scaffold1330 TRF Tandem_Repeat 23407 23586 180 + . . scaffold1330 GLEAN mRNA 54035 54318 1 - . ID=CGI_10009454; scaffold1330 TRF Tandem_Repeat 54035 54318 336 + . . scaffold1330 GLEAN mRNA 65331 65369 0.544237 - . ID=CGI_10009455; scaffold1330 TRF Tandem_Repeat 65331 65369 71 + . . scaffold1330 GLEAN mRNA 187903 187947 0.999 - . ID=CGI_10009458; scaffold1330 TRF Tandem_Repeat 187903 187947 72 + . . scaffold1330 GLEAN mRNA 189912 189951 0.999 - . ID=CGI_10009458; scaffold1330 TRF Tandem_Repeat 189912 189951 80 + . . scaffold1330 GLEAN mRNA 190756 190796 0.999 - . ID=CGI_10009458; scaffold1330 TRF Tandem_Repeat 190756 190796 82 + . . scaffold1330 GLEAN mRNA 191417 191472 0.999 - . ID=CGI_10009458; scaffold1330 TRF Tandem_Repeat 191417 191472 60 + . . scaffold612 GLEAN mRNA 98419 98469 0.449004 - . ID=CGI_10009462; scaffold612 WUBlastX LTR_Gypsy 98419 98613 53 - . . scaffold612 GLEAN mRNA 98215 98469 0.449004 - . ID=CGI_10009462; scaffold612 WUBlastX LTR_Gypsy 98215 98580 52 - . . scaffold612 GLEAN mRNA 115029 115063 1 - . ID=CGI_10009463; scaffold612 TRF Tandem_Repeat 115029 115063 70 + . . scaffold612 GLEAN mRNA 136017 136066 0.691363 + . ID=CGI_10009465; scaffold612 TRF Tandem_Repeat 136017 136066 100 + . . scaffold612 GLEAN mRNA 141055 141080 1 - . ID=CGI_10009466; scaffold612 TRF Tandem_Repeat 141055 141080 52 + . . scaffold612 GLEAN mRNA 151283 151408 1 + . ID=CGI_10009467; scaffold612 WUBlastX LINE_RTE-X 151283 151408 43 - . . scaffold612 GLEAN mRNA 209501 209600 0.814159 - . ID=CGI_10009473; scaffold612 TRF Tandem_Repeat 209501 209600 173 + . . scaffold1733 GLEAN mRNA 72824 72867 0.999999 + . ID=CGI_10009480; scaffold1733 TRF Tandem_Repeat 72824 72867 61 + . . scaffold1733 GLEAN mRNA 72825 72863 0.999999 + . ID=CGI_10009480; scaffold1733 TRF Tandem_Repeat 72825 72863 51 + . . scaffold1733 GLEAN mRNA 72875 73674 0.999999 + . ID=CGI_10009480; scaffold1733 TRF Tandem_Repeat 72875 73674 1093 + . . scaffold1733 GLEAN mRNA 159621 159671 0.701996 + . ID=CGI_10009488; scaffold1733 TRF Tandem_Repeat 159621 159671 102 + . . scaffold1733 GLEAN mRNA 165874 165962 0.701996 + . ID=CGI_10009488; scaffold1733 TRF Tandem_Repeat 165874 165962 169 + . . scaffold1733 GLEAN mRNA 178481 178547 0.701996 + . ID=CGI_10009488; scaffold1733 TRF Tandem_Repeat 178481 178547 125 + . . scaffold1733 GLEAN mRNA 179554 179602 0.701996 + . ID=CGI_10009488; scaffold1733 TRF Tandem_Repeat 179554 179602 98 + . . scaffold1733 GLEAN mRNA 164622 164837 0.701996 + . ID=CGI_10009488; scaffold1733 WUBlastX LINE_CR1-L2 164622 164837 41 + . . scaffold1733 GLEAN mRNA 164854 165315 0.701996 + . ID=CGI_10009488; scaffold1733 WUBlastX LINE_CR1-L2 164854 165315 91 + . . scaffold1733 GLEAN mRNA 164541 164837 0.701996 + . ID=CGI_10009488; scaffold1733 WUBlastX LINE_CR1 164541 164837 35 + . . scaffold1733 GLEAN mRNA 175077 176183 0.701996 + . ID=CGI_10009488; scaffold1733 WUBlastX LTR_Pao 175077 176183 1120 + . . scaffold1733 GLEAN mRNA 164854 165231 0.701996 + . ID=CGI_10009488; scaffold1733 WUBlastX LINE_L2 164854 165231 162 + . . scaffold1733 GLEAN mRNA 163751 164173 0.701996 + . ID=CGI_10009488; scaffold1733 WUBlastX LINE_CR1 163751 164173 24 + . . scaffold1733 GLEAN mRNA 228255 228329 0.508137 + . ID=CGI_10009491; scaffold1733 TRF Tandem_Repeat 228255 228329 87 + . . scaffold569 GLEAN mRNA 2051 2092 0.405853 - . ID=CGI_10009492; scaffold569 TRF Tandem_Repeat 2051 2092 57 + . . scaffold569 GLEAN mRNA 4606 4657 0.405853 - . ID=CGI_10009492; scaffold569 TRF Tandem_Repeat 4606 4657 68 + . . scaffold569 GLEAN mRNA 35491 35543 0.974978 + . ID=CGI_10009494; scaffold569 TRF Tandem_Repeat 35491 35543 106 + . . scaffold569 GLEAN mRNA 43068 43364 0.974978 + . ID=CGI_10009494; scaffold569 WUBlastX LTR_DIRS 43068 43364 49 + . . scaffold569 GLEAN mRNA 40824 41111 0.974978 + . ID=CGI_10009494; scaffold569 WUBlastX LTR_DIRS 40824 41111 107 + . . scaffold569 GLEAN mRNA 40743 41144 0.974978 + . ID=CGI_10009494; scaffold569 WUBlastX LTR_DIRS 40743 41144 99 + . . scaffold569 GLEAN mRNA 42271 42369 0.974978 + . ID=CGI_10009494; scaffold569 WUBlastX LTR_DIRS 42271 42369 24 + . . scaffold569 GLEAN mRNA 43353 43535 0.974978 + . ID=CGI_10009494; scaffold569 WUBlastX LTR_DIRS 43353 43535 46 + . . scaffold569 GLEAN mRNA 40848 41591 0.974978 + . ID=CGI_10009494; scaffold569 WUBlastX LTR_DIRS 40848 41591 99 + . . scaffold569 GLEAN mRNA 41549 42334 0.974978 + . ID=CGI_10009494; scaffold569 WUBlastX LTR_DIRS 41549 42334 205 + . . scaffold569 GLEAN mRNA 33436 33651 0.974978 + . ID=CGI_10009494; scaffold569 WUBlastX LINE_CR1 33436 33651 76 + . . scaffold569 GLEAN mRNA 43269 43505 0.974978 + . ID=CGI_10009494; scaffold569 WUBlastX LTR_DIRS 43269 43505 50 + . . scaffold569 GLEAN mRNA 56138 56193 0.974978 + . ID=CGI_10009494; scaffold569 TRF Tandem_Repeat 56138 56193 89 + . . scaffold569 GLEAN mRNA 59951 59990 0.974978 + . ID=CGI_10009494; scaffold569 TRF Tandem_Repeat 59951 59990 62 + . . scaffold569 GLEAN mRNA 102862 103681 0.803638 - . ID=CGI_10009496; scaffold569 TRF Tandem_Repeat 102862 103681 1081 + . . scaffold569 GLEAN mRNA 103901 103941 0.803638 - . ID=CGI_10009496; scaffold569 TRF Tandem_Repeat 103901 103941 82 + . . scaffold569 GLEAN mRNA 105220 105354 0.803638 - . ID=CGI_10009496; scaffold569 TRF Tandem_Repeat 105220 105354 173 + . . scaffold569 GLEAN mRNA 107069 107277 0.803638 - . ID=CGI_10009496; scaffold569 TRF Tandem_Repeat 107069 107277 118 + . . scaffold569 GLEAN mRNA 108916 109278 0.803638 - . ID=CGI_10009496; scaffold569 TRF Tandem_Repeat 108916 109278 367 + . . scaffold569 GLEAN mRNA 109070 109278 0.803638 - . ID=CGI_10009496; scaffold569 TRF Tandem_Repeat 109070 109278 259 + . . scaffold569 GLEAN mRNA 110463 111370 0.803638 - . ID=CGI_10009496; scaffold569 TRF Tandem_Repeat 110463 111370 1378 + . . scaffold569 GLEAN mRNA 111851 111899 0.803638 - . ID=CGI_10009496; scaffold569 TRF Tandem_Repeat 111851 111899 89 + . . scaffold569 GLEAN mRNA 113299 113475 0.803638 - . ID=CGI_10009496; scaffold569 WUBlastX LINE_RTE-X 113299 113475 54 + . . scaffold569 GLEAN mRNA 118607 118673 0.520571 - . ID=CGI_10009497; scaffold569 TRF Tandem_Repeat 118607 118673 80 + . . scaffold569 GLEAN mRNA 120353 120507 0.520571 - . ID=CGI_10009497; scaffold569 TRF Tandem_Repeat 120353 120507 143 + . . scaffold569 GLEAN mRNA 120371 120512 0.520571 - . ID=CGI_10009497; scaffold569 TRF Tandem_Repeat 120371 120512 180 + . . scaffold569 GLEAN mRNA 150994 151043 0.674144 + . ID=CGI_10009498; scaffold569 TRF Tandem_Repeat 150994 151043 66 + . . scaffold569 GLEAN mRNA 150994 151023 0.674144 + . ID=CGI_10009498; scaffold569 TRF Tandem_Repeat 150994 151023 51 + . . scaffold569 GLEAN mRNA 157381 157414 0.674144 + . ID=CGI_10009498; scaffold569 TRF Tandem_Repeat 157381 157414 68 + . . scaffold569 GLEAN mRNA 162648 163427 0.674144 + . ID=CGI_10009498; scaffold569 WUBlastX LINE_L1-Tx1 162648 163427 173 - . . scaffold569 GLEAN mRNA 163457 163630 0.674144 + . ID=CGI_10009498; scaffold569 WUBlastX LINE_L1-Tx1 163457 163630 87 - . . scaffold569 GLEAN mRNA 153163 153825 0.674144 + . ID=CGI_10009498; scaffold569 WUBlastX LINE_L2 153163 153825 149 - . . scaffold569 GLEAN mRNA 163496 163693 0.674144 + . ID=CGI_10009498; scaffold569 WUBlastX LINE_L1-Tx1 163496 163693 34 - . . scaffold569 GLEAN mRNA 153406 153948 0.674144 + . ID=CGI_10009498; scaffold569 WUBlastX LINE_Jockey 153406 153948 134 - . . scaffold569 GLEAN mRNA 152800 153687 0.674144 + . ID=CGI_10009498; scaffold569 WUBlastX LINE_L2 152800 153687 442 - . . scaffold569 GLEAN mRNA 180547 180580 0.966732 - . ID=CGI_10009501; scaffold569 TRF Tandem_Repeat 180547 180580 59 + . . scaffold569 GLEAN mRNA 184175 184283 0.966732 - . ID=CGI_10009501; scaffold569 TRF Tandem_Repeat 184175 184283 79 + . . scaffold711 GLEAN mRNA 214492 214536 0.999862 + . ID=CGI_10009503; scaffold711 TRF Tandem_Repeat 214492 214536 90 + . . scaffold711 GLEAN mRNA 215387 215431 0.999862 + . ID=CGI_10009503; scaffold711 TRF Tandem_Repeat 215387 215431 90 + . . scaffold1286 GLEAN mRNA 4442 4600 0.999936 - . ID=CGI_10009504; scaffold1286 WUBlastX LINE_CR1 4442 4600 37 - . . scaffold1286 GLEAN mRNA 4242 4367 0.999936 - . ID=CGI_10009504; scaffold1286 WUBlastX LINE_L2 4242 4367 29 - . . scaffold1286 GLEAN mRNA 4412 4600 0.999936 - . ID=CGI_10009504; scaffold1286 WUBlastX LINE_CR1 4412 4600 36 - . . scaffold1286 GLEAN mRNA 4826 5056 0.999936 - . ID=CGI_10009504; scaffold1286 WUBlastX LINE_CR1 4826 5056 90 - . . scaffold1286 GLEAN mRNA 4189 4302 0.999936 - . ID=CGI_10009504; scaffold1286 WUBlastX LINE_CR1 4189 4302 27 - . . scaffold1286 GLEAN mRNA 4799 5122 0.999936 - . ID=CGI_10009504; scaffold1286 WUBlastX LINE_CR1 4799 5122 59 - . . scaffold1286 GLEAN mRNA 12464 12503 1 + . ID=CGI_10009505; scaffold1286 TRF Tandem_Repeat 12464 12503 80 + . . scaffold1286 GLEAN mRNA 31515 31649 0.660843 + . ID=CGI_10009508; scaffold1286 WUBlastX DNA_TcMar-Tc2 31515 31649 71 - . . scaffold1286 GLEAN mRNA 31619 31954 0.660843 + . ID=CGI_10009508; scaffold1286 WUBlastX DNA_TcMar-Tc2 31619 31954 70 - . . scaffold1286 GLEAN mRNA 66473 66548 0.726937 - . ID=CGI_10009511; scaffold1286 TRF Tandem_Repeat 66473 66548 80 + . . scaffold1286 GLEAN mRNA 66478 66548 0.726937 - . ID=CGI_10009511; scaffold1286 TRF Tandem_Repeat 66478 66548 97 + . . scaffold1286 GLEAN mRNA 114432 114557 0.396375 - . ID=CGI_10009514; scaffold1286 WUBlastX LINE_CR1 114432 114557 95 - . . scaffold1286 GLEAN mRNA 114432 114674 0.396375 - . ID=CGI_10009514; scaffold1286 WUBlastX LINE_CR1 114432 114674 61 - . . scaffold1286 GLEAN mRNA 114146 114373 0.396375 - . ID=CGI_10009514; scaffold1286 WUBlastX LINE_CR1 114146 114373 99 - . . scaffold1286 GLEAN mRNA 114228 114698 0.396375 - . ID=CGI_10009514; scaffold1286 WUBlastX LINE_CR1 114228 114698 50 - . . scaffold1286 GLEAN mRNA 176895 176942 0.535502 + . ID=CGI_10009516; scaffold1286 TRF Tandem_Repeat 176895 176942 96 + . . scaffold1286 GLEAN mRNA 188814 188888 0.683696 + . ID=CGI_10009517; scaffold1286 TRF Tandem_Repeat 188814 188888 116 + . . scaffold1503 GLEAN mRNA 506 557 0.858576 - . ID=CGI_10009522; scaffold1503 TRF Tandem_Repeat 506 557 104 + . . scaffold1503 GLEAN mRNA 1839 2123 0.858576 - . ID=CGI_10009522; scaffold1503 TRF Tandem_Repeat 1839 2123 552 + . . scaffold1503 GLEAN mRNA 21921 21957 1 - . ID=CGI_10009524; scaffold1503 TRF Tandem_Repeat 21921 21957 74 + . . scaffold1503 GLEAN mRNA 16278 17435 1 - . ID=CGI_10009524; scaffold1503 TRF Tandem_Repeat 16278 17435 1753 + . . scaffold1503 GLEAN mRNA 16278 17435 1 - . ID=CGI_10009524; scaffold1503 TRF Tandem_Repeat 16278 17435 1798 + . . scaffold1503 GLEAN mRNA 16281 17439 1 - . ID=CGI_10009524; scaffold1503 TRF Tandem_Repeat 16281 17439 1828 + . . scaffold1503 GLEAN mRNA 41926 42115 0.681639 + . ID=CGI_10009525; scaffold1503 TRF Tandem_Repeat 41926 42115 301 + . . scaffold1503 GLEAN mRNA 42436 42518 0.681639 + . ID=CGI_10009525; scaffold1503 TRF Tandem_Repeat 42436 42518 78 + . . scaffold1503 GLEAN mRNA 57003 57263 1 + . ID=CGI_10009528; scaffold1503 WUBlastX DNA_TcMar-Tc1 57003 57263 164 - . . scaffold1503 GLEAN mRNA 57620 57901 1 + . ID=CGI_10009528; scaffold1503 WUBlastX DNA_TcMar-Tc1 57620 57901 26 - . . scaffold1503 GLEAN mRNA 57006 57347 1 + . ID=CGI_10009528; scaffold1503 WUBlastX DNA_TcMar-Tc1 57006 57347 148 - . . scaffold1503 GLEAN mRNA 56379 56981 1 + . ID=CGI_10009528; scaffold1503 WUBlastX DNA_TcMar-Tc1 56379 56981 303 - . . scaffold1503 GLEAN mRNA 67183 67438 1 + . ID=CGI_10009528; scaffold1503 TRF Tandem_Repeat 67183 67438 187 + . . scaffold1503 GLEAN mRNA 67183 67509 1 + . ID=CGI_10009528; scaffold1503 TRF Tandem_Repeat 67183 67509 276 + . . scaffold1503 GLEAN mRNA 67183 67500 1 + . ID=CGI_10009528; scaffold1503 TRF Tandem_Repeat 67183 67500 176 + . . scaffold1503 GLEAN mRNA 64362 66286 1 + . ID=CGI_10009528; scaffold1503 TRF Tandem_Repeat 64362 66286 1356 + . . scaffold1503 GLEAN mRNA 80765 80790 0.999557 - . ID=CGI_10009530; scaffold1503 TRF Tandem_Repeat 80765 80790 52 + . . scaffold1503 GLEAN mRNA 86801 86831 0.999557 - . ID=CGI_10009530; scaffold1503 TRF Tandem_Repeat 86801 86831 62 + . . scaffold1503 GLEAN mRNA 99829 99883 1 + . ID=CGI_10009531; scaffold1503 TRF Tandem_Repeat 99829 99883 103 + . . scaffold1503 GLEAN mRNA 119545 119968 0.882949 + . ID=CGI_10009534; scaffold1503 TRF Tandem_Repeat 119545 119968 322 + . . scaffold1503 GLEAN mRNA 121629 122475 0.882949 + . ID=CGI_10009534; scaffold1503 TRF Tandem_Repeat 121629 122475 1271 + . . scaffold1503 GLEAN mRNA 133691 133766 0.882949 + . ID=CGI_10009534; scaffold1503 TRF Tandem_Repeat 133691 133766 109 + . . scaffold1503 GLEAN mRNA 138576 138605 0.882949 + . ID=CGI_10009534; scaffold1503 TRF Tandem_Repeat 138576 138605 60 + . . scaffold1503 GLEAN mRNA 139997 140200 0.882949 + . ID=CGI_10009534; scaffold1503 TRF Tandem_Repeat 139997 140200 160 + . . scaffold1503 GLEAN mRNA 147224 147264 0.882949 + . ID=CGI_10009534; scaffold1503 TRF Tandem_Repeat 147224 147264 73 + . . scaffold1503 GLEAN mRNA 149677 149711 0.882949 + . ID=CGI_10009534; scaffold1503 TRF Tandem_Repeat 149677 149711 70 + . . scaffold1503 GLEAN mRNA 195669 196278 1 + . ID=CGI_10009539; scaffold1503 TRF Tandem_Repeat 195669 196278 253 + . . scaffold1503 GLEAN mRNA 195816 196151 1 + . ID=CGI_10009539; scaffold1503 TRF Tandem_Repeat 195816 196151 536 + . . scaffold1503 GLEAN mRNA 195817 196151 1 + . ID=CGI_10009539; scaffold1503 TRF Tandem_Repeat 195817 196151 521 + . . scaffold1503 GLEAN mRNA 196106 196251 1 + . ID=CGI_10009539; scaffold1503 TRF Tandem_Repeat 196106 196251 97 + . . scaffold1503 GLEAN mRNA 195932 196278 1 + . ID=CGI_10009539; scaffold1503 TRF Tandem_Repeat 195932 196278 341 + . . scaffold1503 GLEAN mRNA 195764 196271 1 + . ID=CGI_10009539; scaffold1503 TRF Tandem_Repeat 195764 196271 131 + . . scaffold1503 GLEAN mRNA 196744 196783 1 + . ID=CGI_10009539; scaffold1503 TRF Tandem_Repeat 196744 196783 64 + . . scaffold1503 GLEAN mRNA 199806 199919 1 + . ID=CGI_10009539; scaffold1503 TRF Tandem_Repeat 199806 199919 210 + . . scaffold1503 GLEAN mRNA 200925 200960 1 + . ID=CGI_10009539; scaffold1503 TRF Tandem_Repeat 200925 200960 63 + . . scaffold1503 GLEAN mRNA 200911 200960 1 + . ID=CGI_10009539; scaffold1503 TRF Tandem_Repeat 200911 200960 64 + . . scaffold1503 GLEAN mRNA 206447 207236 1 + . ID=CGI_10009539; scaffold1503 TRF Tandem_Repeat 206447 207236 1049 + . . scaffold1503 GLEAN mRNA 222543 223280 0.776193 - . ID=CGI_10009541; scaffold1503 TRF Tandem_Repeat 222543 223280 337 + . . scaffold1503 GLEAN mRNA 227255 227455 0.776193 - . ID=CGI_10009541; scaffold1503 WUBlastX LINE_RTE-BovB 227255 227455 123 + . . scaffold43242 GLEAN mRNA 20616 20634 0.593326 - . ID=CGI_10009542; scaffold43242 WUBlastX LTR_ERV1 20506 20634 45 - . . scaffold43242 GLEAN mRNA 20616 20667 0.593326 - . ID=CGI_10009542; scaffold43242 WUBlastX LTR_ERV1 20470 20667 43 - . . scaffold43242 GLEAN mRNA 31699 32037 0.878599 + . ID=CGI_10009544; scaffold43242 TRF Tandem_Repeat 31699 32037 237 + . . scaffold43242 GLEAN mRNA 31686 32046 0.878599 + . ID=CGI_10009544; scaffold43242 TRF Tandem_Repeat 31686 32046 555 + . . scaffold43242 GLEAN mRNA 28617 28769 0.878599 + . ID=CGI_10009544; scaffold43242 WUBlastX DNA_TcMar-Tc1 28617 28769 50 + . . scaffold43242 GLEAN mRNA 28617 28739 0.878599 + . ID=CGI_10009544; scaffold43242 WUBlastX DNA_TcMar-Tc1 28617 28739 58 + . . scaffold43242 GLEAN mRNA 28123 28272 0.878599 + . ID=CGI_10009544; scaffold43242 WUBlastX DNA_TcMar-Tc1 28123 28272 31 + . . scaffold43242 GLEAN mRNA 28909 29196 0.878599 + . ID=CGI_10009544; scaffold43242 WUBlastX DNA_TcMar-Tc1 28909 29196 152 + . . scaffold43242 GLEAN mRNA 28186 28353 0.878599 + . ID=CGI_10009544; scaffold43242 WUBlastX DNA_TcMar-Tc1 28186 28353 33 + . . scaffold43242 GLEAN mRNA 33111 33308 0.878599 + . ID=CGI_10009544; scaffold43242 WUBlastX DNA_Kolobok 33111 33308 57 + . . scaffold43242 GLEAN mRNA 32583 32792 0.878599 + . ID=CGI_10009544; scaffold43242 WUBlastX DNA_Kolobok 32583 32792 82 + . . scaffold43242 GLEAN mRNA 154565 154789 0.118333 + . ID=CGI_10009546; scaffold43242 WUBlastX DNA_TcMar-Tc2 154541 154789 51 + . . scaffold43242 GLEAN mRNA 154963 155022 0.118333 + . ID=CGI_10009546; scaffold43242 WUBlastX DNA_TcMar-Fot1 154963 155022 28 + . . scaffold43242 GLEAN mRNA 155202 155405 0.118333 + . ID=CGI_10009546; scaffold43242 WUBlastX DNA_TcMar-Tc2 155202 155405 93 + . . scaffold43242 GLEAN mRNA 158205 158258 1 - . ID=CGI_10009547; scaffold43242 TRF Tandem_Repeat 158205 158258 54 + . . scaffold43242 GLEAN mRNA 158428 160230 1 - . ID=CGI_10009547; scaffold43242 TRF Tandem_Repeat 158428 160230 2993 + . . scaffold43242 GLEAN mRNA 175191 175227 0.651123 + . ID=CGI_10009550; scaffold43242 TRF Tandem_Repeat 175191 175227 74 + . . scaffold43242 GLEAN mRNA 181634 181666 0.702112 + . ID=CGI_10009551; scaffold43242 TRF Tandem_Repeat 181634 181666 57 + . . scaffold43242 GLEAN mRNA 219471 219516 0.28448 + . ID=CGI_10009555; scaffold43242 TRF Tandem_Repeat 219471 219516 92 + . . scaffold1627 GLEAN mRNA 4711 4788 0.702089 + . ID=CGI_10009559; scaffold1627 TRF Tandem_Repeat 4711 4788 138 + . . scaffold1627 GLEAN mRNA 9443 9549 0.702089 + . ID=CGI_10009559; scaffold1627 TRF Tandem_Repeat 9443 9549 74 + . . scaffold1627 GLEAN mRNA 9444 9550 0.702089 + . ID=CGI_10009559; scaffold1627 TRF Tandem_Repeat 9444 9550 89 + . . scaffold1627 GLEAN mRNA 9451 9559 0.702089 + . ID=CGI_10009559; scaffold1627 TRF Tandem_Repeat 9451 9559 107 + . . scaffold1627 GLEAN mRNA 55546 55592 0.549617 + . ID=CGI_10009562; scaffold1627 TRF Tandem_Repeat 55546 55592 62 + . . scaffold1627 GLEAN mRNA 132392 132437 0.525814 - . ID=CGI_10009564; scaffold1627 TRF Tandem_Repeat 132392 132437 76 + . . scaffold1627 GLEAN mRNA 138175 138254 0.525814 - . ID=CGI_10009564; scaffold1627 TRF Tandem_Repeat 138175 138254 83 + . . scaffold1627 GLEAN mRNA 138838 139196 0.525814 - . ID=CGI_10009564; scaffold1627 TRF Tandem_Repeat 138838 139196 250 + . . scaffold1627 GLEAN mRNA 138845 139197 0.525814 - . ID=CGI_10009564; scaffold1627 TRF Tandem_Repeat 138845 139197 283 + . . scaffold1627 GLEAN mRNA 158163 158240 0.63892 + . ID=CGI_10009565; scaffold1627 TRF Tandem_Repeat 158163 158240 156 + . . scaffold1627 GLEAN mRNA 183927 183965 0.503235 - . ID=CGI_10009567; scaffold1627 TRF Tandem_Repeat 183927 183965 78 + . . scaffold1627 GLEAN mRNA 203776 203847 0.503235 - . ID=CGI_10009567; scaffold1627 TRF Tandem_Repeat 203776 203847 117 + . . scaffold1627 GLEAN mRNA 208057 208266 0.503235 - . ID=CGI_10009567; scaffold1627 WUBlastX DNA_TcMar-Tc1 208057 208266 48 + . . scaffold596 GLEAN mRNA 20615 20657 0.65113 - . ID=CGI_10009569; scaffold596 TRF Tandem_Repeat 20615 20657 86 + . . scaffold596 GLEAN mRNA 37808 37848 0.992486 + . ID=CGI_10009571; scaffold596 TRF Tandem_Repeat 37808 37848 82 + . . scaffold596 GLEAN mRNA 74334 74375 0.608742 + . ID=CGI_10009572; scaffold596 TRF Tandem_Repeat 74334 74375 57 + . . scaffold596 GLEAN mRNA 94754 95293 0.456762 + . ID=CGI_10009574; scaffold596 TRF Tandem_Repeat 94754 95293 630 + . . scaffold596 GLEAN mRNA 95968 97581 0.456762 + . ID=CGI_10009574; scaffold596 TRF Tandem_Repeat 95968 97581 1763 + . . scaffold596 GLEAN mRNA 130757 130819 0.40533 + . ID=CGI_10009575; scaffold596 TRF Tandem_Repeat 130757 130819 81 + . . scaffold596 GLEAN mRNA 140910 141025 0.40533 + . ID=CGI_10009575; scaffold596 TRF Tandem_Repeat 140910 141025 56 + . . scaffold596 GLEAN mRNA 140979 141025 0.40533 + . ID=CGI_10009575; scaffold596 TRF Tandem_Repeat 140979 141025 58 + . . scaffold596 GLEAN mRNA 144163 144199 0.40533 + . ID=CGI_10009575; scaffold596 TRF Tandem_Repeat 144163 144199 56 + . . scaffold596 GLEAN mRNA 145183 145934 0.40533 + . ID=CGI_10009575; scaffold596 TRF Tandem_Repeat 145183 145934 1328 + . . scaffold596 GLEAN mRNA 195556 195774 0.36732 - . ID=CGI_10009577; scaffold596 WUBlastX RC_Helitron 195556 195774 95 - . . scaffold596 GLEAN mRNA 209902 210126 0.999343 + . ID=CGI_10009578; scaffold596 WUBlastX LTR_Gypsy 209902 210126 88 + . . scaffold596 GLEAN mRNA 209983 210147 0.999343 + . ID=CGI_10009578; scaffold596 WUBlastX LTR_Gypsy 209983 210147 100 + . . scaffold596 GLEAN mRNA 210129 210215 0.999343 + . ID=CGI_10009578; scaffold596 WUBlastX LTR_Gypsy 210129 210215 36 + . . scaffold596 GLEAN mRNA 217956 217981 0.999343 + . ID=CGI_10009578; scaffold596 TRF Tandem_Repeat 217956 217981 52 + . . scaffold596 GLEAN mRNA 217981 218032 0.999343 + . ID=CGI_10009578; scaffold596 TRF Tandem_Repeat 217981 218032 104 + . . scaffold596 GLEAN mRNA 213673 213777 0.999343 + . ID=CGI_10009578; scaffold596 WUBlastX DNA_TcMar-Tc1 213673 213777 68 - . . scaffold596 GLEAN mRNA 213833 214309 0.999343 + . ID=CGI_10009578; scaffold596 WUBlastX DNA_TcMar-Tc1 213833 214309 200 - . . scaffold596 GLEAN mRNA 213767 214351 0.999343 + . ID=CGI_10009578; scaffold596 WUBlastX DNA_TcMar-Tc1 213767 214351 156 - . . scaffold1754 GLEAN mRNA 127114 127151 0.788238 + . ID=CGI_10009580; scaffold1754 TRF Tandem_Repeat 127114 127151 76 + . . scaffold1754 GLEAN mRNA 128240 128264 0.788238 + . ID=CGI_10009580; scaffold1754 TRF Tandem_Repeat 128240 128264 50 + . . scaffold1754 GLEAN mRNA 130430 130481 0.788238 + . ID=CGI_10009580; scaffold1754 TRF Tandem_Repeat 130430 130481 104 + . . scaffold1754 GLEAN mRNA 128611 129000 0.788238 + . ID=CGI_10009580; scaffold1754 WUBlastX LINE_L1-Tx1 128611 129000 220 + . . scaffold1754 GLEAN mRNA 128991 129488 0.788238 + . ID=CGI_10009580; scaffold1754 WUBlastX LINE_L1-Tx1 128991 129488 99 + . . scaffold1754 GLEAN mRNA 129491 130315 0.788238 + . ID=CGI_10009580; scaffold1754 WUBlastX LINE_L1-Tx1 129491 130315 49 + . . scaffold1754 GLEAN mRNA 128608 129066 0.788238 + . ID=CGI_10009580; scaffold1754 WUBlastX LINE_L1 128608 129066 133 + . . scaffold1754 GLEAN mRNA 128485 129000 0.788238 + . ID=CGI_10009580; scaffold1754 WUBlastX LINE_L1 128485 129000 126 + . . scaffold1754 GLEAN mRNA 185525 185581 1 - . ID=CGI_10009582; scaffold1754 TRF Tandem_Repeat 185525 185581 114 + . . scaffold1754 GLEAN mRNA 185525 185581 0.985379 + . ID=CGI_10009583; scaffold1754 TRF Tandem_Repeat 185525 185581 114 + . . scaffold1754 GLEAN mRNA 193894 193960 0.985379 + . ID=CGI_10009583; scaffold1754 TRF Tandem_Repeat 193894 193960 80 + . . scaffold1754 GLEAN mRNA 227611 227648 0.492638 + . ID=CGI_10009584; scaffold1754 TRF Tandem_Repeat 227611 227648 76 + . . scaffold1754 GLEAN mRNA 216741 218222 0.492638 + . ID=CGI_10009584; scaffold1754 WUBlastX LTR_Gypsy 215796 218222 1737 + . . scaffold1754 GLEAN mRNA 218225 219802 0.492638 + . ID=CGI_10009584; scaffold1754 WUBlastX LTR_Gypsy 218225 219802 1302 + . . scaffold1754 GLEAN mRNA 218750 220096 0.492638 + . ID=CGI_10009584; scaffold1754 WUBlastX LTR_Gypsy 218750 220096 138 + . . scaffold43240 GLEAN mRNA 144416 144853 1 - . ID=CGI_10009590; scaffold43240 TRF Tandem_Repeat 144416 144853 563 + . . scaffold43240 GLEAN mRNA 146811 146896 1 - . ID=CGI_10009590; scaffold43240 TRF Tandem_Repeat 146811 146896 118 + . . scaffold43240 GLEAN mRNA 153005 153069 0.999675 - . ID=CGI_10009591; scaffold43240 TRF Tandem_Repeat 153005 153069 130 + . . scaffold43240 GLEAN mRNA 167586 167616 0.999832 + . ID=CGI_10009593; scaffold43240 TRF Tandem_Repeat 167586 167616 53 + . . scaffold43240 GLEAN mRNA 178146 178172 0.330439 - . ID=CGI_10009594; scaffold43240 TRF Tandem_Repeat 178146 178172 54 + . . scaffold43240 GLEAN mRNA 189737 189779 0.330439 - . ID=CGI_10009594; scaffold43240 TRF Tandem_Repeat 189737 189779 59 + . . scaffold43240 GLEAN mRNA 189733 189767 0.330439 - . ID=CGI_10009594; scaffold43240 TRF Tandem_Repeat 189733 189767 52 + . . scaffold43240 GLEAN mRNA 202797 203249 0.330439 - . ID=CGI_10009594; scaffold43240 TRF Tandem_Repeat 202797 203249 672 + . . scaffold43240 GLEAN mRNA 202797 203249 0.998607 + . ID=CGI_10009595; scaffold43240 TRF Tandem_Repeat 202797 203249 672 + . . scaffold43240 GLEAN mRNA 215190 215220 0.998607 + . ID=CGI_10009595; scaffold43240 TRF Tandem_Repeat 215190 215220 53 + . . scaffold1119 GLEAN mRNA 20078 20120 0.997964 + . ID=CGI_10009597; scaffold1119 TRF Tandem_Repeat 20078 20120 77 + . . scaffold1119 GLEAN mRNA 141568 142482 0.654676 + . ID=CGI_10009604; scaffold1119 WUBlastX LINE_CR1 141568 142482 746 - . . scaffold1119 GLEAN mRNA 141574 142674 0.654676 + . ID=CGI_10009604; scaffold1119 WUBlastX LINE_CR1 141574 142674 686 - . . scaffold1119 GLEAN mRNA 140738 140806 0.654676 + . ID=CGI_10009604; scaffold1119 WUBlastX LINE_L2 140738 140806 21 - . . scaffold1119 GLEAN mRNA 141706 142875 0.654676 + . ID=CGI_10009604; scaffold1119 WUBlastX LINE_CR1 141706 142875 225 - . . scaffold1119 GLEAN mRNA 141568 142482 0.993006 - . ID=CGI_10009605; scaffold1119 WUBlastX LINE_CR1 141568 142482 746 - . . scaffold1119 GLEAN mRNA 141574 142674 0.993006 - . ID=CGI_10009605; scaffold1119 WUBlastX LINE_CR1 141574 142674 686 - . . scaffold1119 GLEAN mRNA 141706 142875 0.993006 - . ID=CGI_10009605; scaffold1119 WUBlastX LINE_CR1 141706 142875 225 - . . scaffold1119 GLEAN mRNA 149526 149574 0.993006 - . ID=CGI_10009605; scaffold1119 TRF Tandem_Repeat 149526 149574 98 + . . scaffold1119 GLEAN mRNA 159633 160002 0.993006 - . ID=CGI_10009605; scaffold1119 TRF Tandem_Repeat 159633 160002 634 + . . scaffold1119 GLEAN mRNA 162470 163117 0.993006 - . ID=CGI_10009605; scaffold1119 WUBlastX DNA_TcMar-Tc2 162470 163117 194 - . . scaffold1119 GLEAN mRNA 163182 163340 0.993006 - . ID=CGI_10009605; scaffold1119 WUBlastX DNA_TcMar-Tc2 163182 163340 24 - . . scaffold1119 GLEAN mRNA 162302 163141 0.993006 - . ID=CGI_10009605; scaffold1119 WUBlastX DNA_TcMar-Tc2 162302 163141 141 - . . scaffold1119 GLEAN mRNA 170581 171435 0.993006 - . ID=CGI_10009605; scaffold1119 WUBlastX LTR_Gypsy 170581 171435 442 - . . scaffold1119 GLEAN mRNA 149526 149574 0.777485 + . ID=CGI_10009606; scaffold1119 TRF Tandem_Repeat 149526 149574 98 + . . scaffold1119 GLEAN mRNA 199169 199222 0.731623 + . ID=CGI_10009609; scaffold1119 TRF Tandem_Repeat 199169 199222 101 + . . scaffold43244 GLEAN mRNA 106469 106500 0.999948 - . ID=CGI_10009612; scaffold43244 TRF Tandem_Repeat 106469 106500 64 + . . scaffold43244 GLEAN mRNA 106556 106587 0.999948 - . ID=CGI_10009612; scaffold43244 TRF Tandem_Repeat 106556 106587 64 + . . scaffold43244 GLEAN mRNA 111818 111903 0.999948 - . ID=CGI_10009612; scaffold43244 TRF Tandem_Repeat 111818 111903 64 + . . scaffold43244 GLEAN mRNA 191609 191678 0.402837 - . ID=CGI_10009616; scaffold43244 TRF Tandem_Repeat 191609 191678 113 + . . scaffold43244 GLEAN mRNA 198294 198342 0.402837 - . ID=CGI_10009616; scaffold43244 TRF Tandem_Repeat 198294 198342 71 + . . scaffold43244 GLEAN mRNA 200398 200451 0.402837 - . ID=CGI_10009616; scaffold43244 TRF Tandem_Repeat 200398 200451 108 + . . scaffold43244 GLEAN mRNA 213966 214325 0.744209 - . ID=CGI_10009617; scaffold43244 WUBlastX RC_Helitron 213966 214325 122 - . . scaffold43278 GLEAN mRNA 92762 92810 0.99677 + . ID=CGI_10009621; scaffold43278 TRF Tandem_Repeat 92762 92810 55 + . . scaffold43278 GLEAN mRNA 122588 122870 0.538906 + . ID=CGI_10009622; scaffold43278 TRF Tandem_Repeat 122588 122870 338 + . . scaffold43278 GLEAN mRNA 126457 126519 0.538906 + . ID=CGI_10009622; scaffold43278 TRF Tandem_Repeat 126457 126519 126 + . . scaffold43278 GLEAN mRNA 186819 186863 0.959202 + . ID=CGI_10009624; scaffold43278 TRF Tandem_Repeat 186819 186863 90 + . . scaffold43278 GLEAN mRNA 194312 194364 0.959202 + . ID=CGI_10009624; scaffold43278 TRF Tandem_Repeat 194312 194364 106 + . . scaffold43278 GLEAN mRNA 204626 205337 0.959202 + . ID=CGI_10009624; scaffold43278 TRF Tandem_Repeat 204626 205337 1074 + . . scaffold43258 GLEAN mRNA 24611 24644 1 - . ID=CGI_10009628; scaffold43258 TRF Tandem_Repeat 24611 24644 50 + . . scaffold43258 GLEAN mRNA 25026 25081 1 - . ID=CGI_10009628; scaffold43258 TRF Tandem_Repeat 25026 25081 112 + . . scaffold43258 GLEAN mRNA 93144 93227 0.523441 + . ID=CGI_10009633; scaffold43258 WUBlastX DNA_TcMar-Marin 93144 93227 28 - . . scaffold43258 GLEAN mRNA 93359 93922 0.523441 + . ID=CGI_10009633; scaffold43258 WUBlastX DNA_TcMar-Marin 93359 93922 64 - . . scaffold43258 GLEAN mRNA 93181 93309 0.523441 + . ID=CGI_10009633; scaffold43258 WUBlastX DNA_TcMar-Marin 93181 93309 42 - . . scaffold43258 GLEAN mRNA 111526 111621 0.523441 + . ID=CGI_10009633; scaffold43258 TRF Tandem_Repeat 111526 111621 120 + . . scaffold43258 GLEAN mRNA 111828 111946 0.523441 + . ID=CGI_10009633; scaffold43258 TRF Tandem_Repeat 111828 111946 132 + . . scaffold43258 GLEAN mRNA 118035 118076 0.523441 + . ID=CGI_10009633; scaffold43258 TRF Tandem_Repeat 118035 118076 52 + . . scaffold43258 GLEAN mRNA 142300 142494 0.483992 + . ID=CGI_10009634; scaffold43258 WUBlastX LINE_RTE-X 142300 142494 20 - . . scaffold43258 GLEAN mRNA 143111 143446 0.483992 + . ID=CGI_10009634; scaffold43258 WUBlastX LINE_RTE-X 143111 143446 57 - . . scaffold43258 GLEAN mRNA 142825 143166 0.483992 + . ID=CGI_10009634; scaffold43258 WUBlastX LINE_RTE-X 142825 143166 58 - . . scaffold43258 GLEAN mRNA 143512 143784 0.483992 + . ID=CGI_10009634; scaffold43258 WUBlastX LINE_RTE-X 143512 143784 56 - . . scaffold43258 GLEAN mRNA 144430 144669 0.483992 + . ID=CGI_10009634; scaffold43258 WUBlastX LINE_L2 144430 144669 31 - . . scaffold43258 GLEAN mRNA 204132 204421 0.614349 + . ID=CGI_10009635; scaffold43258 TRF Tandem_Repeat 204132 204421 436 + . . scaffold43258 GLEAN mRNA 206847 207128 0.614349 + . ID=CGI_10009635; scaffold43258 TRF Tandem_Repeat 206847 207128 363 + . . scaffold43258 GLEAN mRNA 209934 210356 0.614349 + . ID=CGI_10009635; scaffold43258 TRF Tandem_Repeat 209934 210356 641 + . . scaffold43258 GLEAN mRNA 209934 210359 0.614349 + . ID=CGI_10009635; scaffold43258 TRF Tandem_Repeat 209934 210359 635 + . . scaffold43258 GLEAN mRNA 215484 215817 0.614349 + . ID=CGI_10009635; scaffold43258 TRF Tandem_Repeat 215484 215817 560 + . . scaffold43258 GLEAN mRNA 220600 221069 0.614349 + . ID=CGI_10009635; scaffold43258 TRF Tandem_Repeat 220600 221069 467 + . . scaffold43258 GLEAN mRNA 227025 227431 0.614349 + . ID=CGI_10009635; scaffold43258 TRF Tandem_Repeat 227025 227431 570 + . . scaffold43258 GLEAN mRNA 227026 227431 0.614349 + . ID=CGI_10009635; scaffold43258 TRF Tandem_Repeat 227026 227431 531 + . . scaffold43290 GLEAN mRNA 18699 19217 0.927015 - . ID=CGI_10009638; scaffold43290 TRF Tandem_Repeat 18699 19217 440 + . . scaffold43290 GLEAN mRNA 18697 19090 0.927015 - . ID=CGI_10009638; scaffold43290 TRF Tandem_Repeat 18697 19090 382 + . . scaffold43290 GLEAN mRNA 18697 19217 0.927015 - . ID=CGI_10009638; scaffold43290 TRF Tandem_Repeat 18697 19217 381 + . . scaffold43290 GLEAN mRNA 37481 37523 0.927015 - . ID=CGI_10009638; scaffold43290 TRF Tandem_Repeat 37481 37523 86 + . . scaffold43290 GLEAN mRNA 112724 113269 0.99969 - . ID=CGI_10009641; scaffold43290 TRF Tandem_Repeat 112724 113269 660 + . . scaffold43290 GLEAN mRNA 124153 124325 0.99969 - . ID=CGI_10009641; scaffold43290 TRF Tandem_Repeat 124153 124325 249 + . . scaffold43290 GLEAN mRNA 208532 208663 0.737369 + . ID=CGI_10009648; scaffold43290 WUBlastX LINE_L2 208532 208663 42 + . . scaffold43290 GLEAN mRNA 208678 209751 0.737369 + . ID=CGI_10009648; scaffold43290 WUBlastX LINE_L2 208678 209751 512 + . . scaffold43290 GLEAN mRNA 216980 217030 0.48135 - . ID=CGI_10009649; scaffold43290 TRF Tandem_Repeat 216980 217030 79 + . . scaffold43290 GLEAN mRNA 216993 217059 0.48135 - . ID=CGI_10009649; scaffold43290 TRF Tandem_Repeat 216993 217059 68 + . . scaffold43290 GLEAN mRNA 216980 217059 0.48135 - . ID=CGI_10009649; scaffold43290 TRF Tandem_Repeat 216980 217059 80 + . . scaffold43290 GLEAN mRNA 217599 217784 0.48135 - . ID=CGI_10009649; scaffold43290 TRF Tandem_Repeat 217599 217784 252 + . . scaffold43290 GLEAN mRNA 219282 219342 0.48135 - . ID=CGI_10009649; scaffold43290 TRF Tandem_Repeat 219282 219342 122 + . . scaffold43290 GLEAN mRNA 233032 233131 0.987465 + . ID=CGI_10009650; scaffold43290 TRF Tandem_Repeat 233032 233131 155 + . . scaffold43280 GLEAN mRNA 28276 28638 1 - . ID=CGI_10009653; scaffold43280 WUBlastX DNA_Sola 28276 28638 78 - . . scaffold43280 GLEAN mRNA 28669 29022 1 - . ID=CGI_10009653; scaffold43280 WUBlastX DNA_Sola 28669 29022 62 - . . scaffold43280 GLEAN mRNA 29195 29335 1 - . ID=CGI_10009653; scaffold43280 WUBlastX DNA_Sola 29195 29470 22 - . . scaffold43280 GLEAN mRNA 111710 112285 0.543593 + . ID=CGI_10009655; scaffold43280 WUBlastX LINE_L1-Tx1 111710 112285 127 - . . scaffold43280 GLEAN mRNA 111683 112192 0.543593 + . ID=CGI_10009655; scaffold43280 WUBlastX LINE_L1-Tx1 111683 112192 253 - . . scaffold43280 GLEAN mRNA 137193 138406 0.651964 - . ID=CGI_10009657; scaffold43280 TRF Tandem_Repeat 137193 138406 1616 + . . scaffold43280 GLEAN mRNA 165592 165627 0.651964 - . ID=CGI_10009657; scaffold43280 TRF Tandem_Repeat 165592 165627 54 + . . scaffold43280 GLEAN mRNA 168118 168300 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 168118 168300 31 + . . scaffold43280 GLEAN mRNA 170155 170316 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 170155 170316 39 + . . scaffold43280 GLEAN mRNA 167586 168119 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 167586 168119 287 + . . scaffold43280 GLEAN mRNA 168359 168928 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 168359 168928 257 + . . scaffold43280 GLEAN mRNA 168939 169742 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 168939 169742 564 + . . scaffold43280 GLEAN mRNA 170155 170280 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 170155 170280 57 + . . scaffold43280 GLEAN mRNA 170807 170974 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 170807 170974 60 + . . scaffold43280 GLEAN mRNA 170837 171073 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 170837 171073 21 + . . scaffold43280 GLEAN mRNA 170840 170974 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 170840 170974 67 + . . scaffold43280 GLEAN mRNA 168040 168201 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 168040 168201 52 + . . scaffold43280 GLEAN mRNA 169721 170158 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 169721 170158 226 + . . scaffold43280 GLEAN mRNA 167479 167622 0.651964 - . ID=CGI_10009657; scaffold43280 WUBlastX LTR_Gypsy 167479 167622 46 + . . scaffold43280 GLEAN mRNA 183754 183806 0.999673 - . ID=CGI_10009658; scaffold43280 TRF Tandem_Repeat 183754 183806 88 + . . scaffold43280 GLEAN mRNA 187754 187815 0.999673 - . ID=CGI_10009658; scaffold43280 TRF Tandem_Repeat 187754 187815 88 + . . scaffold43272 GLEAN mRNA 12980 13018 0.997753 - . ID=CGI_10009660; scaffold43272 TRF Tandem_Repeat 12980 13018 71 + . . scaffold43272 GLEAN mRNA 13072 13116 0.997753 - . ID=CGI_10009660; scaffold43272 TRF Tandem_Repeat 13072 13116 90 + . . scaffold43272 GLEAN mRNA 19041 19238 0.997753 - . ID=CGI_10009660; scaffold43272 TRF Tandem_Repeat 19041 19238 184 + . . scaffold43272 GLEAN mRNA 12980 13018 0.393512 + . ID=CGI_10009661; scaffold43272 TRF Tandem_Repeat 12980 13018 71 + . . scaffold43272 GLEAN mRNA 13072 13116 0.393512 + . ID=CGI_10009661; scaffold43272 TRF Tandem_Repeat 13072 13116 90 + . . scaffold43272 GLEAN mRNA 19041 19238 0.393512 + . ID=CGI_10009661; scaffold43272 TRF Tandem_Repeat 19041 19238 184 + . . scaffold43272 GLEAN mRNA 50785 50873 0.644365 - . ID=CGI_10009663; scaffold43272 TRF Tandem_Repeat 50785 50873 110 + . . scaffold43272 GLEAN mRNA 54139 54242 0.644365 - . ID=CGI_10009663; scaffold43272 TRF Tandem_Repeat 54139 54242 174 + . . scaffold43272 GLEAN mRNA 76837 76892 0.544144 + . ID=CGI_10009665; scaffold43272 TRF Tandem_Repeat 76837 76892 103 + . . scaffold43272 GLEAN mRNA 78860 78884 0.544144 + . ID=CGI_10009665; scaffold43272 TRF Tandem_Repeat 78860 78884 50 + . . scaffold43272 GLEAN mRNA 114952 115074 1 - . ID=CGI_10009668; scaffold43272 WUBlastX DNA_Kolobok 114952 115125 61 - . . scaffold43272 GLEAN mRNA 114770 114928 1 - . ID=CGI_10009668; scaffold43272 WUBlastX DNA_Kolobok 114770 114928 25 - . . scaffold43272 GLEAN mRNA 114713 114868 1 - . ID=CGI_10009668; scaffold43272 WUBlastX DNA_Kolobok 114713 114868 51 - . . scaffold43272 GLEAN mRNA 116697 117494 0.999617 - . ID=CGI_10009669; scaffold43272 TRF Tandem_Repeat 116697 117494 1138 + . . scaffold43272 GLEAN mRNA 127662 127695 0.999617 - . ID=CGI_10009669; scaffold43272 TRF Tandem_Repeat 127662 127695 59 + . . scaffold43272 GLEAN mRNA 121246 121530 0.999617 - . ID=CGI_10009669; scaffold43272 WUBlastX DNA_hAT-Tip100 121246 121530 56 + . . scaffold43272 GLEAN mRNA 115214 115474 0.999617 - . ID=CGI_10009669; scaffold43272 WUBlastX DNA_Kolobok 115214 115474 75 - . . scaffold43272 GLEAN mRNA 119926 120243 0.999617 - . ID=CGI_10009669; scaffold43272 WUBlastX LTR_Gypsy 119926 120243 64 + . . scaffold43272 GLEAN mRNA 119644 119844 0.999617 - . ID=CGI_10009669; scaffold43272 WUBlastX LTR_Gypsy-Cigr 119644 119844 102 - . . scaffold43272 GLEAN mRNA 115271 115468 0.999617 - . ID=CGI_10009669; scaffold43272 WUBlastX DNA_Kolobok 115271 115468 78 - . . scaffold43272 GLEAN mRNA 115647 115781 0.999617 - . ID=CGI_10009669; scaffold43272 WUBlastX DNA_Kolobok 115647 115781 81 - . . scaffold43272 GLEAN mRNA 119557 119838 0.999617 - . ID=CGI_10009669; scaffold43272 WUBlastX LTR_Gypsy 119557 119838 75 - . . scaffold43272 GLEAN mRNA 119866 120177 0.999617 - . ID=CGI_10009669; scaffold43272 WUBlastX LTR_Gypsy 119866 120177 206 + . . scaffold43272 GLEAN mRNA 118721 118927 0.999617 - . ID=CGI_10009669; scaffold43272 WUBlastX DNA_Kolobok 118721 118927 69 - . . scaffold43272 GLEAN mRNA 115626 115754 0.999617 - . ID=CGI_10009669; scaffold43272 WUBlastX DNA_Kolobok 115626 115754 24 - . . scaffold1333 GLEAN mRNA 7277 7319 0.590765 - . ID=CGI_10009672; scaffold1333 TRF Tandem_Repeat 7277 7319 54 + . . scaffold1333 GLEAN mRNA 8986 9381 0.590765 - . ID=CGI_10009672; scaffold1333 TRF Tandem_Repeat 8986 9381 458 + . . scaffold1333 GLEAN mRNA 11361 11759 0.590765 - . ID=CGI_10009672; scaffold1333 WUBlastX LTR_Copia 11361 11759 38 - . . scaffold1333 GLEAN mRNA 54289 55152 0.723221 - . ID=CGI_10009674; scaffold1333 WUBlastX LTR_Ngaro 54289 55152 333 - . . scaffold1333 GLEAN mRNA 54157 54510 0.723221 - . ID=CGI_10009674; scaffold1333 WUBlastX DNA?_Crypton? 54157 54510 28 - . . scaffold1333 GLEAN mRNA 54214 54450 0.723221 - . ID=CGI_10009674; scaffold1333 WUBlastX LTR_DIRS 54214 54450 56 - . . scaffold1333 GLEAN mRNA 55292 56503 0.723221 - . ID=CGI_10009674; scaffold1333 WUBlastX LTR_Ngaro 55292 56503 807 - . . scaffold1333 GLEAN mRNA 56872 56934 0.723221 - . ID=CGI_10009674; scaffold1333 WUBlastX LTR_ERV1 56872 56934 23 - . . scaffold1333 GLEAN mRNA 55235 56761 0.723221 - . ID=CGI_10009674; scaffold1333 WUBlastX LTR_Ngaro 55235 56761 551 - . . scaffold1333 GLEAN mRNA 59309 60271 1 - . ID=CGI_10009676; scaffold1333 TRF Tandem_Repeat 59309 60271 1229 + . . scaffold1333 GLEAN mRNA 91364 91401 1 - . ID=CGI_10009680; scaffold1333 TRF Tandem_Repeat 91364 91401 58 + . . scaffold1333 GLEAN mRNA 115569 116760 0.999051 - . ID=CGI_10009682; scaffold1333 TRF Tandem_Repeat 115569 116760 1500 + . . scaffold1333 GLEAN mRNA 139023 139080 1 + . ID=CGI_10009683; scaffold1333 TRF Tandem_Repeat 139023 139080 116 + . . scaffold1333 GLEAN mRNA 139125 139172 1 + . ID=CGI_10009683; scaffold1333 TRF Tandem_Repeat 139125 139172 96 + . . scaffold1333 GLEAN mRNA 154235 154272 1 + . ID=CGI_10009685; scaffold1333 TRF Tandem_Repeat 154235 154272 60 + . . scaffold1333 GLEAN mRNA 156409 156479 1 + . ID=CGI_10009685; scaffold1333 TRF Tandem_Repeat 156409 156479 90 + . . scaffold1333 GLEAN mRNA 187689 187802 0.511082 + . ID=CGI_10009686; scaffold1333 TRF Tandem_Repeat 187689 187802 185 + . . scaffold1333 GLEAN mRNA 204774 204829 0.99265 - . ID=CGI_10009688; scaffold1333 TRF Tandem_Repeat 204774 204829 85 + . . scaffold1333 GLEAN mRNA 211581 211629 0.812187 - . ID=CGI_10009689; scaffold1333 TRF Tandem_Repeat 211581 211629 50 + . . scaffold1333 GLEAN mRNA 230737 230775 0.812187 - . ID=CGI_10009689; scaffold1333 TRF Tandem_Repeat 230737 230775 78 + . . scaffold1333 GLEAN mRNA 237120 237202 0.812187 - . ID=CGI_10009689; scaffold1333 TRF Tandem_Repeat 237120 237202 157 + . . scaffold372 GLEAN mRNA 6456 6575 1 - . ID=CGI_10009690; scaffold372 TRF Tandem_Repeat 6456 6575 213 + . . scaffold372 GLEAN mRNA 43725 43790 0.811719 + . ID=CGI_10009695; scaffold372 TRF Tandem_Repeat 43725 43790 57 + . . scaffold372 GLEAN mRNA 44674 44719 0.811719 + . ID=CGI_10009695; scaffold372 TRF Tandem_Repeat 44674 44719 92 + . . scaffold372 GLEAN mRNA 56898 57133 1 - . ID=CGI_10009696; scaffold372 TRF Tandem_Repeat 56898 57133 309 + . . scaffold372 GLEAN mRNA 57946 57982 1 - . ID=CGI_10009696; scaffold372 TRF Tandem_Repeat 57946 57982 74 + . . scaffold372 GLEAN mRNA 132089 132145 0.925232 + . ID=CGI_10009701; scaffold372 TRF Tandem_Repeat 132089 132145 114 + . . scaffold372 GLEAN mRNA 134074 134117 0.925232 + . ID=CGI_10009701; scaffold372 TRF Tandem_Repeat 134074 134117 88 + . . scaffold372 GLEAN mRNA 132089 132145 0.615405 - . ID=CGI_10009702; scaffold372 TRF Tandem_Repeat 132089 132145 114 + . . scaffold372 GLEAN mRNA 134074 134117 0.615405 - . ID=CGI_10009702; scaffold372 TRF Tandem_Repeat 134074 134117 88 + . . scaffold372 GLEAN mRNA 182418 182456 1 - . ID=CGI_10009709; scaffold372 TRF Tandem_Repeat 182418 182456 62 + . . scaffold372 GLEAN mRNA 205989 206018 0.79298 + . ID=CGI_10009712; scaffold372 TRF Tandem_Repeat 205989 206018 53 + . . scaffold372 GLEAN mRNA 207109 207175 0.79298 + . ID=CGI_10009712; scaffold372 TRF Tandem_Repeat 207109 207175 91 + . . scaffold372 GLEAN mRNA 207117 207166 0.79298 + . ID=CGI_10009712; scaffold372 TRF Tandem_Repeat 207117 207166 82 + . . scaffold372 GLEAN mRNA 233123 233185 0.96929 - . ID=CGI_10009714; scaffold372 TRF Tandem_Repeat 233123 233185 126 + . . scaffold1028 GLEAN mRNA 34589 34660 0.771382 - . ID=CGI_10009717; scaffold1028 TRF Tandem_Repeat 34589 34660 67 + . . scaffold1028 GLEAN mRNA 43340 43364 0.597726 - . ID=CGI_10009718; scaffold1028 TRF Tandem_Repeat 43340 43364 50 + . . scaffold1028 GLEAN mRNA 44213 44253 0.597726 - . ID=CGI_10009718; scaffold1028 TRF Tandem_Repeat 44213 44253 82 + . . scaffold1028 GLEAN mRNA 48100 48150 0.597726 - . ID=CGI_10009718; scaffold1028 TRF Tandem_Repeat 48100 48150 57 + . . scaffold1028 GLEAN mRNA 48364 48612 0.597726 - . ID=CGI_10009718; scaffold1028 TRF Tandem_Repeat 48364 48612 306 + . . scaffold1028 GLEAN mRNA 42081 42257 0.597726 - . ID=CGI_10009718; scaffold1028 WUBlastX LINE_RTE-X 42081 42257 39 + . . scaffold1028 GLEAN mRNA 42524 42757 0.597726 - . ID=CGI_10009718; scaffold1028 WUBlastX LINE_RTE-X 42524 42757 54 + . . scaffold1028 GLEAN mRNA 42039 42266 0.597726 - . ID=CGI_10009718; scaffold1028 WUBlastX LINE_RTE-X 42039 42266 21 + . . scaffold1028 GLEAN mRNA 42111 42278 0.597726 - . ID=CGI_10009718; scaffold1028 WUBlastX LINE_RTE-X 42111 42278 43 + . . scaffold1028 GLEAN mRNA 42117 42332 0.597726 - . ID=CGI_10009718; scaffold1028 WUBlastX LINE_RTE-X 42117 42332 41 + . . scaffold1028 GLEAN mRNA 42407 42739 0.597726 - . ID=CGI_10009718; scaffold1028 WUBlastX LINE_RTE-X 42407 42739 48 + . . scaffold1028 GLEAN mRNA 42302 42781 0.597726 - . ID=CGI_10009718; scaffold1028 WUBlastX LINE_RTE-X 42302 42781 29 + . . scaffold1028 GLEAN mRNA 50579 50629 0.597726 - . ID=CGI_10009718; scaffold1028 TRF Tandem_Repeat 50579 50629 93 + . . scaffold1028 GLEAN mRNA 62536 62604 0.597726 - . ID=CGI_10009718; scaffold1028 WUBlastX LINE_L1-Tx1 62536 62604 20 + . . scaffold1028 GLEAN mRNA 63151 63651 0.597726 - . ID=CGI_10009718; scaffold1028 WUBlastX LINE_L1-Tx1 63151 63651 76 + . . scaffold1028 GLEAN mRNA 98637 98723 0.597726 - . ID=CGI_10009718; scaffold1028 TRF Tandem_Repeat 98637 98723 104 + . . scaffold1028 GLEAN mRNA 98969 99127 0.597726 - . ID=CGI_10009718; scaffold1028 TRF Tandem_Repeat 98969 99127 133 + . . scaffold1028 GLEAN mRNA 99036 99138 0.597726 - . ID=CGI_10009718; scaffold1028 TRF Tandem_Repeat 99036 99138 118 + . . scaffold1028 GLEAN mRNA 99212 99298 0.597726 - . ID=CGI_10009718; scaffold1028 TRF Tandem_Repeat 99212 99298 93 + . . scaffold1028 GLEAN mRNA 102578 103230 0.597726 - . ID=CGI_10009718; scaffold1028 TRF Tandem_Repeat 102578 103230 834 + . . scaffold1028 GLEAN mRNA 81838 82242 0.597726 - . ID=CGI_10009718; scaffold1028 TRF Tandem_Repeat 81838 82242 603 + . . scaffold1028 GLEAN mRNA 130102 130452 0.991659 + . ID=CGI_10009721; scaffold1028 TRF Tandem_Repeat 130102 130452 589 + . . scaffold1028 GLEAN mRNA 136771 137486 0.991659 + . ID=CGI_10009721; scaffold1028 TRF Tandem_Repeat 136771 137486 243 + . . scaffold1028 GLEAN mRNA 137056 137540 0.991659 + . ID=CGI_10009721; scaffold1028 TRF Tandem_Repeat 137056 137540 784 + . . scaffold1028 GLEAN mRNA 140469 140714 0.991659 + . ID=CGI_10009721; scaffold1028 TRF Tandem_Repeat 140469 140714 391 + . . scaffold1028 GLEAN mRNA 219283 219344 0.814528 + . ID=CGI_10009724; scaffold1028 TRF Tandem_Repeat 219283 219344 124 + . . scaffold964 GLEAN mRNA 37395 37574 0.41936 + . ID=CGI_10009727; scaffold964 WUBlastX LINE_L1-Tx1 37395 37574 33 + . . scaffold964 GLEAN mRNA 70820 70854 0.999999 - . ID=CGI_10009729; scaffold964 WUBlastX LTR_Gypsy 70820 71005 24 + . . scaffold964 GLEAN mRNA 71048 71078 0.544809 + . ID=CGI_10009730; scaffold964 TRF Tandem_Repeat 71048 71078 62 + . . scaffold964 GLEAN mRNA 70913 71005 0.544809 + . ID=CGI_10009730; scaffold964 WUBlastX LTR_Gypsy 70820 71005 24 + . . scaffold964 GLEAN mRNA 101257 101308 0.999854 - . ID=CGI_10009732; scaffold964 TRF Tandem_Repeat 101257 101308 86 + . . scaffold964 GLEAN mRNA 103121 103985 0.999854 - . ID=CGI_10009732; scaffold964 TRF Tandem_Repeat 103121 103985 1317 + . . scaffold964 GLEAN mRNA 113645 114570 0.999854 - . ID=CGI_10009732; scaffold964 TRF Tandem_Repeat 113645 114570 1220 + . . scaffold964 GLEAN mRNA 129408 129453 0.999854 - . ID=CGI_10009732; scaffold964 TRF Tandem_Repeat 129408 129453 92 + . . scaffold964 GLEAN mRNA 219386 219476 0.999794 - . ID=CGI_10009735; scaffold964 TRF Tandem_Repeat 219386 219476 85 + . . scaffold964 GLEAN mRNA 222208 222624 0.999794 - . ID=CGI_10009735; scaffold964 TRF Tandem_Repeat 222208 222624 493 + . . scaffold964 GLEAN mRNA 226425 226522 0.999794 - . ID=CGI_10009735; scaffold964 TRF Tandem_Repeat 226425 226522 72 + . . scaffold964 GLEAN mRNA 224047 224289 0.999794 - . ID=CGI_10009735; scaffold964 WUBlastX LTR_Ngaro 224047 224289 169 + . . scaffold964 GLEAN mRNA 224293 224508 0.999794 - . ID=CGI_10009735; scaffold964 WUBlastX LTR_Ngaro 224293 224508 125 + . . scaffold964 GLEAN mRNA 225294 225770 0.999794 - . ID=CGI_10009735; scaffold964 WUBlastX LTR_Ngaro 225294 225770 121 + . . scaffold964 GLEAN mRNA 223368 223991 0.999794 - . ID=CGI_10009735; scaffold964 WUBlastX LTR_Ngaro 223368 223991 185 + . . scaffold964 GLEAN mRNA 224436 225287 0.999794 - . ID=CGI_10009735; scaffold964 WUBlastX LTR_Ngaro 224436 225287 386 + . . scaffold964 GLEAN mRNA 225423 225890 0.999794 - . ID=CGI_10009735; scaffold964 WUBlastX LTR_Ngaro 225423 225890 157 + . . scaffold43296 GLEAN mRNA 52288 52344 0.648527 + . ID=CGI_10009741; scaffold43296 TRF Tandem_Repeat 52288 52344 114 + . . scaffold43296 GLEAN mRNA 109327 109378 0.537251 - . ID=CGI_10009743; scaffold43296 TRF Tandem_Repeat 109327 109378 104 + . . scaffold43296 GLEAN mRNA 120330 120479 0.537251 - . ID=CGI_10009743; scaffold43296 TRF Tandem_Repeat 120330 120479 205 + . . scaffold43296 GLEAN mRNA 121521 121610 0.537251 - . ID=CGI_10009743; scaffold43296 WUBlastX LTR_ERV1 121521 121862 30 - . . scaffold43296 GLEAN mRNA 149493 149742 0.662398 + . ID=CGI_10009745; scaffold43296 TRF Tandem_Repeat 149493 149742 263 + . . scaffold43296 GLEAN mRNA 152977 153037 0.662398 + . ID=CGI_10009745; scaffold43296 TRF Tandem_Repeat 152977 153037 122 + . . scaffold43296 GLEAN mRNA 164216 164277 0.662398 + . ID=CGI_10009745; scaffold43296 TRF Tandem_Repeat 164216 164277 117 + . . scaffold43296 GLEAN mRNA 217100 217130 0.498765 - . ID=CGI_10009746; scaffold43296 TRF Tandem_Repeat 217100 217130 62 + . . scaffold322 GLEAN mRNA 3407 4391 0.999982 - . ID=CGI_10009747; scaffold322 TRF Tandem_Repeat 3407 4391 651 + . . scaffold322 GLEAN mRNA 3460 4391 0.999982 - . ID=CGI_10009747; scaffold322 TRF Tandem_Repeat 3460 4391 1127 + . . scaffold322 GLEAN mRNA 3460 4391 0.999982 - . ID=CGI_10009747; scaffold322 TRF Tandem_Repeat 3460 4391 1093 + . . scaffold322 GLEAN mRNA 6954 6994 0.999982 - . ID=CGI_10009747; scaffold322 TRF Tandem_Repeat 6954 6994 82 + . . scaffold322 GLEAN mRNA 23550 23594 0.994987 + . ID=CGI_10009748; scaffold322 TRF Tandem_Repeat 23550 23594 90 + . . scaffold322 GLEAN mRNA 30974 31046 0.994987 + . ID=CGI_10009748; scaffold322 TRF Tandem_Repeat 30974 31046 51 + . . scaffold322 GLEAN mRNA 30973 31046 0.994987 + . ID=CGI_10009748; scaffold322 TRF Tandem_Repeat 30973 31046 75 + . . scaffold322 GLEAN mRNA 195611 195674 0.738574 - . ID=CGI_10009751; scaffold322 TRF Tandem_Repeat 195611 195674 110 + . . scaffold43302 GLEAN mRNA 7372 7440 0.277786 - . ID=CGI_10009755; scaffold43302 TRF Tandem_Repeat 7372 7440 138 + . . scaffold43302 GLEAN mRNA 14349 14888 0.277786 - . ID=CGI_10009755; scaffold43302 WUBlastX DNA_IS4EU 14349 14888 61 + . . scaffold43302 GLEAN mRNA 15627 15950 0.277786 - . ID=CGI_10009755; scaffold43302 WUBlastX DNA_Kolobok-IS4 15627 15950 54 + . . scaffold43302 GLEAN mRNA 15684 15950 0.277786 - . ID=CGI_10009755; scaffold43302 WUBlastX DNA_IS4EU 15684 15950 99 + . . scaffold43302 GLEAN mRNA 15401 15583 0.277786 - . ID=CGI_10009755; scaffold43302 WUBlastX DNA_Kolobok-IS4 15401 15583 24 + . . scaffold43302 GLEAN mRNA 15967 16257 0.277786 - . ID=CGI_10009755; scaffold43302 WUBlastX DNA_IS4EU 15967 16257 92 + . . scaffold43302 GLEAN mRNA 21662 21718 0.277786 - . ID=CGI_10009755; scaffold43302 TRF Tandem_Repeat 21662 21718 105 + . . scaffold43302 GLEAN mRNA 22911 23124 0.277786 - . ID=CGI_10009755; scaffold43302 TRF Tandem_Repeat 22911 23124 133 + . . scaffold43302 GLEAN mRNA 22920 23121 0.277786 - . ID=CGI_10009755; scaffold43302 TRF Tandem_Repeat 22920 23121 192 + . . scaffold43302 GLEAN mRNA 57821 58351 0.992844 + . ID=CGI_10009758; scaffold43302 WUBlastX DNA_PiggyBac 57821 58351 177 + . . scaffold43302 GLEAN mRNA 59252 59986 0.992844 + . ID=CGI_10009758; scaffold43302 WUBlastX DNA_PiggyBac 59252 59986 144 + . . scaffold43302 GLEAN mRNA 59908 60261 0.992844 + . ID=CGI_10009758; scaffold43302 WUBlastX DNA_PiggyBac 59908 60261 243 + . . scaffold43302 GLEAN mRNA 59408 59938 0.992844 + . ID=CGI_10009758; scaffold43302 WUBlastX DNA_PiggyBac 59408 59938 177 + . . scaffold43302 GLEAN mRNA 59938 60333 0.992844 + . ID=CGI_10009758; scaffold43302 WUBlastX DNA_PiggyBac 59938 60333 211 + . . scaffold43302 GLEAN mRNA 60345 60905 0.992844 + . ID=CGI_10009758; scaffold43302 WUBlastX DNA_PiggyBac 60345 60905 162 + . . scaffold43302 GLEAN mRNA 57665 58399 0.992844 + . ID=CGI_10009758; scaffold43302 WUBlastX DNA_PiggyBac 57665 58399 144 + . . scaffold43302 GLEAN mRNA 82410 82461 0.992844 + . ID=CGI_10009758; scaffold43302 TRF Tandem_Repeat 82410 82461 104 + . . scaffold43302 GLEAN mRNA 87165 87375 0.992844 + . ID=CGI_10009758; scaffold43302 TRF Tandem_Repeat 87165 87375 146 + . . scaffold43302 GLEAN mRNA 90663 90701 0.992844 + . ID=CGI_10009758; scaffold43302 TRF Tandem_Repeat 90663 90701 69 + . . scaffold43302 GLEAN mRNA 82410 82461 0.911752 - . ID=CGI_10009760; scaffold43302 TRF Tandem_Repeat 82410 82461 104 + . . scaffold43302 GLEAN mRNA 112111 112156 0.974461 + . ID=CGI_10009763; scaffold43302 TRF Tandem_Repeat 112111 112156 92 + . . scaffold43302 GLEAN mRNA 114006 114323 0.974461 + . ID=CGI_10009763; scaffold43302 TRF Tandem_Repeat 114006 114323 129 + . . scaffold43302 GLEAN mRNA 114006 114330 0.974461 + . ID=CGI_10009763; scaffold43302 TRF Tandem_Repeat 114006 114330 74 + . . scaffold43302 GLEAN mRNA 116485 116522 0.974461 + . ID=CGI_10009763; scaffold43302 TRF Tandem_Repeat 116485 116522 76 + . . scaffold43302 GLEAN mRNA 116872 116897 0.974461 + . ID=CGI_10009763; scaffold43302 TRF Tandem_Repeat 116872 116897 52 + . . scaffold43302 GLEAN mRNA 168964 168999 0.999969 - . ID=CGI_10009767; scaffold43302 TRF Tandem_Repeat 168964 168999 72 + . . scaffold43302 GLEAN mRNA 170594 170628 0.999969 - . ID=CGI_10009767; scaffold43302 TRF Tandem_Repeat 170594 170628 54 + . . scaffold43302 GLEAN mRNA 172414 172448 0.999969 - . ID=CGI_10009767; scaffold43302 TRF Tandem_Repeat 172414 172448 54 + . . scaffold43302 GLEAN mRNA 176297 176347 0.999969 - . ID=CGI_10009767; scaffold43302 TRF Tandem_Repeat 176297 176347 102 + . . scaffold43302 GLEAN mRNA 201529 201840 0.838494 + . ID=CGI_10009769; scaffold43302 WUBlastX LTR_Copia 201529 201840 54 + . . scaffold323 GLEAN mRNA 30505 30532 0.844002 + . ID=CGI_10009772; scaffold323 TRF Tandem_Repeat 30505 30532 56 + . . scaffold323 GLEAN mRNA 31493 31557 0.844002 + . ID=CGI_10009772; scaffold323 TRF Tandem_Repeat 31493 31557 85 + . . scaffold323 GLEAN mRNA 35639 35686 0.844002 + . ID=CGI_10009772; scaffold323 TRF Tandem_Repeat 35639 35686 96 + . . scaffold323 GLEAN mRNA 57951 57985 0.999949 + . ID=CGI_10009773; scaffold323 TRF Tandem_Repeat 57951 57985 61 + . . scaffold323 GLEAN mRNA 57983 58024 0.999949 + . ID=CGI_10009773; scaffold323 TRF Tandem_Repeat 57983 58024 84 + . . scaffold323 GLEAN mRNA 51780 52943 0.999949 + . ID=CGI_10009773; scaffold323 WUBlastX RC_Helitron 51780 52943 725 + . . scaffold323 GLEAN mRNA 52946 53500 0.999949 + . ID=CGI_10009773; scaffold323 WUBlastX RC_Helitron 52946 53500 167 + . . scaffold323 GLEAN mRNA 52946 53617 0.999949 + . ID=CGI_10009773; scaffold323 WUBlastX RC_Helitron 52946 53617 34 + . . scaffold323 GLEAN mRNA 123085 123402 0.649599 - . ID=CGI_10009779; scaffold323 WUBlastX DNA_Kolobok-Hyd 123085 123600 58 - . . scaffold323 GLEAN mRNA 194248 194459 0.491426 + . ID=CGI_10009781; scaffold323 TRF Tandem_Repeat 194248 194459 286 + . . scaffold323 GLEAN mRNA 195298 195543 0.491426 + . ID=CGI_10009781; scaffold323 TRF Tandem_Repeat 195298 195543 286 + . . scaffold323 GLEAN mRNA 195294 195543 0.491426 + . ID=CGI_10009781; scaffold323 TRF Tandem_Repeat 195294 195543 335 + . . scaffold43314 GLEAN mRNA 106797 106847 0.990719 - . ID=CGI_10009783; scaffold43314 TRF Tandem_Repeat 106797 106847 52 + . . scaffold43314 GLEAN mRNA 215117 215162 0.377066 + . ID=CGI_10009786; scaffold43314 TRF Tandem_Repeat 215117 215162 92 + . . scaffold1560 GLEAN mRNA 5762 5984 0.937847 + . ID=CGI_10009791; scaffold1560 TRF Tandem_Repeat 5762 5984 164 + . . scaffold1560 GLEAN mRNA 5793 5980 0.937847 + . ID=CGI_10009791; scaffold1560 TRF Tandem_Repeat 5793 5980 184 + . . scaffold1560 GLEAN mRNA 36088 36128 0.998701 + . ID=CGI_10009793; scaffold1560 TRF Tandem_Repeat 36088 36128 82 + . . scaffold1560 GLEAN mRNA 39556 39596 0.998701 + . ID=CGI_10009793; scaffold1560 TRF Tandem_Repeat 39556 39596 64 + . . scaffold1560 GLEAN mRNA 46798 46849 0.998701 + . ID=CGI_10009793; scaffold1560 TRF Tandem_Repeat 46798 46849 77 + . . scaffold1560 GLEAN mRNA 61838 61922 0.998701 + . ID=CGI_10009793; scaffold1560 TRF Tandem_Repeat 61838 61922 88 + . . scaffold1560 GLEAN mRNA 65563 65737 0.998701 + . ID=CGI_10009793; scaffold1560 TRF Tandem_Repeat 65563 65737 251 + . . scaffold1560 GLEAN mRNA 66016 66065 0.998701 + . ID=CGI_10009793; scaffold1560 TRF Tandem_Repeat 66016 66065 100 + . . scaffold1560 GLEAN mRNA 68460 68633 0.998701 + . ID=CGI_10009793; scaffold1560 TRF Tandem_Repeat 68460 68633 156 + . . scaffold1560 GLEAN mRNA 171930 171972 0.498517 + . ID=CGI_10009797; scaffold1560 TRF Tandem_Repeat 171930 171972 86 + . . scaffold1560 GLEAN mRNA 176033 176109 0.498517 + . ID=CGI_10009797; scaffold1560 TRF Tandem_Repeat 176033 176109 138 + . . scaffold1560 GLEAN mRNA 200736 200941 0.498517 + . ID=CGI_10009797; scaffold1560 TRF Tandem_Repeat 200736 200941 223 + . . scaffold1560 GLEAN mRNA 201423 201863 0.498517 + . ID=CGI_10009797; scaffold1560 TRF Tandem_Repeat 201423 201863 433 + . . scaffold1560 GLEAN mRNA 201423 201863 0.498517 + . ID=CGI_10009797; scaffold1560 TRF Tandem_Repeat 201423 201863 484 + . . scaffold1560 GLEAN mRNA 212335 212978 0.998889 - . ID=CGI_10009800; scaffold1560 TRF Tandem_Repeat 212335 212978 832 + . . scaffold1560 GLEAN mRNA 212335 212978 0.998889 - . ID=CGI_10009800; scaffold1560 TRF Tandem_Repeat 212335 212978 924 + . . scaffold1560 GLEAN mRNA 240834 241130 0.481188 + . ID=CGI_10009802; scaffold1560 WUBlastX LINE_I 240711 241130 39 + . . scaffold1204 GLEAN mRNA 37639 37728 0.500149 - . ID=CGI_10009804; scaffold1204 WUBlastX LTR_Pao 37639 37728 23 + . . scaffold1204 GLEAN mRNA 38424 38672 0.500149 - . ID=CGI_10009804; scaffold1204 WUBlastX LTR_Pao 38424 40016 491 + . . scaffold1204 GLEAN mRNA 67389 67420 0.377863 - . ID=CGI_10009807; scaffold1204 TRF Tandem_Repeat 67389 67420 55 + . . scaffold1204 GLEAN mRNA 160068 160137 1 - . ID=CGI_10009812; scaffold1204 TRF Tandem_Repeat 160068 160137 117 + . . scaffold1204 GLEAN mRNA 160229 160272 1 - . ID=CGI_10009812; scaffold1204 TRF Tandem_Repeat 160229 160272 88 + . . scaffold1204 GLEAN mRNA 168565 168636 0.999624 - . ID=CGI_10009813; scaffold1204 TRF Tandem_Repeat 168565 168636 144 + . . scaffold1204 GLEAN mRNA 184885 185084 0.989868 - . ID=CGI_10009814; scaffold1204 TRF Tandem_Repeat 184885 185084 337 + . . scaffold1204 GLEAN mRNA 199945 201279 0.989868 - . ID=CGI_10009814; scaffold1204 TRF Tandem_Repeat 199945 201279 1952 + . . scaffold1204 GLEAN mRNA 201449 201486 0.989868 - . ID=CGI_10009814; scaffold1204 TRF Tandem_Repeat 201449 201486 58 + . . scaffold1476 GLEAN mRNA 150606 151001 0.993885 - . ID=CGI_10009825; scaffold1476 TRF Tandem_Repeat 150606 151001 516 + . . scaffold1476 GLEAN mRNA 158393 158427 0.993885 - . ID=CGI_10009825; scaffold1476 TRF Tandem_Repeat 158393 158427 61 + . . scaffold1476 GLEAN mRNA 160384 160753 0.993885 - . ID=CGI_10009825; scaffold1476 TRF Tandem_Repeat 160384 160753 490 + . . scaffold1476 GLEAN mRNA 160815 160931 0.993885 - . ID=CGI_10009825; scaffold1476 TRF Tandem_Repeat 160815 160931 234 + . . scaffold1476 GLEAN mRNA 160913 161234 0.993885 - . ID=CGI_10009825; scaffold1476 TRF Tandem_Repeat 160913 161234 278 + . . scaffold1476 GLEAN mRNA 175811 176630 0.862141 + . ID=CGI_10009826; scaffold1476 TRF Tandem_Repeat 175811 176630 833 + . . scaffold1476 GLEAN mRNA 170899 171075 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_CR1-L2 170899 171075 20 + . . scaffold1476 GLEAN mRNA 171850 171954 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_L2 171850 171954 32 + . . scaffold1476 GLEAN mRNA 172540 173721 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_RTE-X 172540 173721 54 - . . scaffold1476 GLEAN mRNA 173715 174107 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_RTE-X 173715 174107 111 - . . scaffold1476 GLEAN mRNA 171114 171506 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_CR1-L2 171114 171506 108 + . . scaffold1476 GLEAN mRNA 172540 172662 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_RTE-X 172540 172662 73 - . . scaffold1476 GLEAN mRNA 173940 174137 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_Jockey 173940 174137 73 - . . scaffold1476 GLEAN mRNA 172389 172553 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_CR1-L2 172389 172553 21 + . . scaffold1476 GLEAN mRNA 175116 175187 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_RTE-X 175116 175187 23 - . . scaffold1476 GLEAN mRNA 172510 172632 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_RTE-X 172510 172632 29 - . . scaffold1476 GLEAN mRNA 170987 171127 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_L2 170987 171127 44 + . . scaffold1476 GLEAN mRNA 171503 171628 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_CR1-L2 171503 171628 62 + . . scaffold1476 GLEAN mRNA 171063 171215 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_CR1 171063 171215 63 + . . scaffold1476 GLEAN mRNA 173026 173754 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_RTE-X 173026 173754 157 - . . scaffold1476 GLEAN mRNA 228985 229025 0.888104 + . ID=CGI_10009827; scaffold1476 TRF Tandem_Repeat 228985 229025 55 + . . scaffold1476 GLEAN mRNA 240305 240404 0.993945 - . ID=CGI_10009828; scaffold1476 TRF Tandem_Repeat 240305 240404 191 + . . scaffold1476 GLEAN mRNA 240736 240776 0.993945 - . ID=CGI_10009828; scaffold1476 TRF Tandem_Repeat 240736 240776 82 + . . scaffold43344 GLEAN mRNA 71467 71505 0.998055 - . ID=CGI_10009833; scaffold43344 TRF Tandem_Repeat 71467 71505 69 + . . scaffold43344 GLEAN mRNA 88768 88797 0.99935 - . ID=CGI_10009836; scaffold43344 TRF Tandem_Repeat 88768 88797 60 + . . scaffold43344 GLEAN mRNA 104762 106058 0.558395 - . ID=CGI_10009837; scaffold43344 TRF Tandem_Repeat 104762 106058 1372 + . . scaffold43344 GLEAN mRNA 146857 146883 0.999999 + . ID=CGI_10009840; scaffold43344 TRF Tandem_Repeat 146857 146883 54 + . . scaffold43344 GLEAN mRNA 193095 193352 0.624685 + . ID=CGI_10009842; scaffold43344 TRF Tandem_Repeat 193095 193352 208 + . . scaffold955 GLEAN mRNA 16096 16137 0.999676 + . ID=CGI_10009845; scaffold955 TRF Tandem_Repeat 16096 16137 84 + . . scaffold955 GLEAN mRNA 59757 59798 0.990656 - . ID=CGI_10009848; scaffold955 TRF Tandem_Repeat 59757 59798 52 + . . scaffold955 GLEAN mRNA 85612 85666 0.741203 + . ID=CGI_10009852; scaffold955 TRF Tandem_Repeat 85612 85666 110 + . . scaffold955 GLEAN mRNA 85794 85837 0.741203 + . ID=CGI_10009852; scaffold955 TRF Tandem_Repeat 85794 85837 88 + . . scaffold955 GLEAN mRNA 87777 88378 0.741203 + . ID=CGI_10009852; scaffold955 TRF Tandem_Repeat 87777 88378 945 + . . scaffold955 GLEAN mRNA 109410 109661 0.99714 + . ID=CGI_10009853; scaffold955 TRF Tandem_Repeat 109410 109661 233 + . . scaffold955 GLEAN mRNA 109410 109683 0.99714 + . ID=CGI_10009853; scaffold955 TRF Tandem_Repeat 109410 109683 230 + . . scaffold955 GLEAN mRNA 110342 110545 0.99714 + . ID=CGI_10009853; scaffold955 TRF Tandem_Repeat 110342 110545 196 + . . scaffold955 GLEAN mRNA 110328 110609 0.99714 + . ID=CGI_10009853; scaffold955 TRF Tandem_Repeat 110328 110609 361 + . . scaffold955 GLEAN mRNA 110401 110610 0.99714 + . ID=CGI_10009853; scaffold955 TRF Tandem_Repeat 110401 110610 226 + . . scaffold955 GLEAN mRNA 111562 111602 0.99714 + . ID=CGI_10009853; scaffold955 TRF Tandem_Repeat 111562 111602 82 + . . scaffold955 GLEAN mRNA 112534 112583 0.99714 + . ID=CGI_10009853; scaffold955 TRF Tandem_Repeat 112534 112583 100 + . . scaffold955 GLEAN mRNA 107387 107698 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX DNA_Maverick 107387 107698 37 + . . scaffold955 GLEAN mRNA 121695 121865 0.99714 + . ID=CGI_10009853; scaffold955 TRF Tandem_Repeat 121695 121865 87 + . . scaffold955 GLEAN mRNA 121865 121960 0.99714 + . ID=CGI_10009853; scaffold955 TRF Tandem_Repeat 121865 121960 77 + . . scaffold955 GLEAN mRNA 121900 121990 0.99714 + . ID=CGI_10009853; scaffold955 TRF Tandem_Repeat 121900 121990 65 + . . scaffold955 GLEAN mRNA 119290 119475 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 119290 119475 48 - . . scaffold955 GLEAN mRNA 120026 120406 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 120026 120406 68 - . . scaffold955 GLEAN mRNA 119552 119665 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 119552 119665 37 - . . scaffold955 GLEAN mRNA 120029 120307 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 120029 120307 81 - . . scaffold955 GLEAN mRNA 118510 118665 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 118510 118665 28 - . . scaffold955 GLEAN mRNA 119682 119981 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 119682 119981 29 - . . scaffold955 GLEAN mRNA 118543 118683 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 118543 118683 45 - . . scaffold955 GLEAN mRNA 119033 119596 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 119033 119596 47 - . . scaffold955 GLEAN mRNA 120020 120190 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 120020 120190 89 - . . scaffold955 GLEAN mRNA 119975 120220 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX LINE_RTE-BovB 119975 120220 30 - . . scaffold955 GLEAN mRNA 141136 141187 0.863777 + . ID=CGI_10009854; scaffold955 TRF Tandem_Repeat 141136 141187 97 + . . scaffold955 GLEAN mRNA 163661 163685 0.943285 - . ID=CGI_10009855; scaffold955 TRF Tandem_Repeat 163661 163685 50 + . . scaffold955 GLEAN mRNA 173789 173836 0.628156 + . ID=CGI_10009856; scaffold955 TRF Tandem_Repeat 173789 173836 96 + . . scaffold955 GLEAN mRNA 193665 194081 0.45779 + . ID=CGI_10009857; scaffold955 WUBlastX DNA_Kolobok-Hyd 193665 194081 36 + . . scaffold955 GLEAN mRNA 209124 209160 0.98915 + . ID=CGI_10009859; scaffold955 TRF Tandem_Repeat 209124 209160 74 + . . scaffold955 GLEAN mRNA 237622 237661 0.927969 - . ID=CGI_10009860; scaffold955 TRF Tandem_Repeat 237622 237661 80 + . . scaffold955 GLEAN mRNA 238772 238958 0.927969 - . ID=CGI_10009860; scaffold955 TRF Tandem_Repeat 238772 238958 213 + . . scaffold955 GLEAN mRNA 243904 244103 1 + . ID=CGI_10009861; scaffold955 TRF Tandem_Repeat 243904 244103 167 + . . scaffold1663 GLEAN mRNA 5170 5257 0.985105 + . ID=CGI_10009862; scaffold1663 TRF Tandem_Repeat 5170 5257 140 + . . scaffold1663 GLEAN mRNA 8509 8980 0.985105 + . ID=CGI_10009862; scaffold1663 TRF Tandem_Repeat 8509 8980 521 + . . scaffold1663 GLEAN mRNA 3508 4392 0.985105 + . ID=CGI_10009862; scaffold1663 WUBlastX LINE_L1-Tx1 3508 4392 23 + . . scaffold1663 GLEAN mRNA 3811 4365 0.985105 + . ID=CGI_10009862; scaffold1663 WUBlastX LINE_L1-Tx1 3811 4365 100 + . . scaffold1663 GLEAN mRNA 16670 17007 0.998969 - . ID=CGI_10009863; scaffold1663 TRF Tandem_Repeat 16670 17007 478 + . . scaffold1663 GLEAN mRNA 24581 24623 0.998969 - . ID=CGI_10009863; scaffold1663 TRF Tandem_Repeat 24581 24623 50 + . . scaffold1663 GLEAN mRNA 17689 18027 0.998969 - . ID=CGI_10009863; scaffold1663 WUBlastX LINE_RTE-X 17689 18027 32 + . . scaffold1663 GLEAN mRNA 18006 18299 0.998969 - . ID=CGI_10009863; scaffold1663 WUBlastX LINE_RTE-X 18006 18299 74 + . . scaffold1663 GLEAN mRNA 17800 18027 0.998969 - . ID=CGI_10009863; scaffold1663 WUBlastX LINE_RTE-X 17800 18027 52 + . . scaffold1663 GLEAN mRNA 71708 71754 0.88293 - . ID=CGI_10009864; scaffold1663 TRF Tandem_Repeat 71708 71754 85 + . . scaffold1663 GLEAN mRNA 92283 92359 0.88293 - . ID=CGI_10009864; scaffold1663 TRF Tandem_Repeat 92283 92359 154 + . . scaffold1663 GLEAN mRNA 95862 95897 0.88293 - . ID=CGI_10009864; scaffold1663 TRF Tandem_Repeat 95862 95897 63 + . . scaffold1663 GLEAN mRNA 108033 108587 0.88293 - . ID=CGI_10009864; scaffold1663 WUBlastX DNA_MuDR 108033 108587 62 - . . scaffold1663 GLEAN mRNA 109743 109859 0.88293 - . ID=CGI_10009864; scaffold1663 WUBlastX LINE_CR1 109743 109859 35 + . . scaffold1663 GLEAN mRNA 109788 109877 0.88293 - . ID=CGI_10009864; scaffold1663 WUBlastX LINE_CR1 109788 109877 27 + . . scaffold1663 GLEAN mRNA 106829 108034 0.88293 - . ID=CGI_10009864; scaffold1663 WUBlastX DNA_MuDR 106829 108034 377 - . . scaffold1663 GLEAN mRNA 108075 108521 0.88293 - . ID=CGI_10009864; scaffold1663 WUBlastX DNA_MuDR 108075 108521 178 - . . scaffold1663 GLEAN mRNA 108473 108913 0.88293 - . ID=CGI_10009864; scaffold1663 WUBlastX DNA_MuDR 108473 108913 29 - . . scaffold1663 GLEAN mRNA 109695 109859 0.88293 - . ID=CGI_10009864; scaffold1663 WUBlastX LINE_CR1 109695 109859 21 + . . scaffold1663 GLEAN mRNA 109874 110905 0.88293 - . ID=CGI_10009864; scaffold1663 WUBlastX LINE_L2 109874 110905 139 + . . scaffold1663 GLEAN mRNA 115427 115637 0.88293 - . ID=CGI_10009864; scaffold1663 TRF Tandem_Repeat 115427 115637 169 + . . scaffold1663 GLEAN mRNA 203304 203341 0.488082 + . ID=CGI_10009866; scaffold1663 TRF Tandem_Repeat 203304 203341 67 + . . scaffold1663 GLEAN mRNA 203465 203489 0.488082 + . ID=CGI_10009866; scaffold1663 TRF Tandem_Repeat 203465 203489 50 + . . scaffold1663 GLEAN mRNA 210833 210872 0.466972 + . ID=CGI_10009867; scaffold1663 TRF Tandem_Repeat 210833 210872 71 + . . scaffold1663 GLEAN mRNA 220374 220453 0.466972 + . ID=CGI_10009867; scaffold1663 TRF Tandem_Repeat 220374 220453 99 + . . scaffold43364 GLEAN mRNA 212888 212933 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 212888 212933 92 + . . scaffold43364 GLEAN mRNA 214500 214536 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 214500 214536 65 + . . scaffold43364 GLEAN mRNA 215953 216021 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 215953 216021 129 + . . scaffold43364 GLEAN mRNA 222553 222812 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 222553 222812 389 + . . scaffold43364 GLEAN mRNA 222866 222923 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 222866 222923 73 + . . scaffold43364 GLEAN mRNA 222872 222923 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 222872 222923 86 + . . scaffold43364 GLEAN mRNA 224268 225267 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 224268 225267 1287 + . . scaffold43364 GLEAN mRNA 225609 225697 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 225609 225697 97 + . . scaffold43364 GLEAN mRNA 226932 227161 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 226932 227161 308 + . . scaffold43364 GLEAN mRNA 233715 234100 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 233715 234100 108 + . . scaffold43364 GLEAN mRNA 233963 234036 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 233963 234036 60 + . . scaffold43364 GLEAN mRNA 233967 234035 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 233967 234035 52 + . . scaffold43364 GLEAN mRNA 233911 234040 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 233911 234040 77 + . . scaffold43364 GLEAN mRNA 233954 234102 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 233954 234102 89 + . . scaffold1850 GLEAN mRNA 1917 1970 1 + . ID=CGI_10009877; scaffold1850 TRF Tandem_Repeat 1917 1970 108 + . . scaffold1850 GLEAN mRNA 48209 48255 0.999676 - . ID=CGI_10009880; scaffold1850 TRF Tandem_Repeat 48209 48255 94 + . . scaffold1850 GLEAN mRNA 63717 63765 0.896648 + . ID=CGI_10009881; scaffold1850 TRF Tandem_Repeat 63717 63765 55 + . . scaffold1850 GLEAN mRNA 64093 64341 0.896648 + . ID=CGI_10009881; scaffold1850 WUBlastX LINE_RTE-X 64093 64341 24 + . . scaffold1850 GLEAN mRNA 63717 63765 0.791674 - . ID=CGI_10009882; scaffold1850 TRF Tandem_Repeat 63717 63765 55 + . . scaffold1850 GLEAN mRNA 64093 64341 0.791674 - . ID=CGI_10009882; scaffold1850 WUBlastX LINE_RTE-X 64093 64341 24 + . . scaffold1850 GLEAN mRNA 81273 81329 1 + . ID=CGI_10009883; scaffold1850 TRF Tandem_Repeat 81273 81329 114 + . . scaffold1850 GLEAN mRNA 81351 81377 1 + . ID=CGI_10009883; scaffold1850 TRF Tandem_Repeat 81351 81377 54 + . . scaffold1850 GLEAN mRNA 136784 136843 0.993586 + . ID=CGI_10009887; scaffold1850 TRF Tandem_Repeat 136784 136843 57 + . . scaffold1850 GLEAN mRNA 137120 137194 0.993586 + . ID=CGI_10009887; scaffold1850 TRF Tandem_Repeat 137120 137194 143 + . . scaffold1850 GLEAN mRNA 138394 138459 0.993586 + . ID=CGI_10009887; scaffold1850 TRF Tandem_Repeat 138394 138459 132 + . . scaffold1850 GLEAN mRNA 138479 138510 0.993586 + . ID=CGI_10009887; scaffold1850 TRF Tandem_Repeat 138479 138510 64 + . . scaffold1850 GLEAN mRNA 142110 142150 0.49961 - . ID=CGI_10009888; scaffold1850 TRF Tandem_Repeat 142110 142150 82 + . . scaffold1850 GLEAN mRNA 146569 146646 0.49961 - . ID=CGI_10009888; scaffold1850 TRF Tandem_Repeat 146569 146646 140 + . . scaffold1850 GLEAN mRNA 146661 146699 0.49961 - . ID=CGI_10009888; scaffold1850 TRF Tandem_Repeat 146661 146699 62 + . . scaffold1850 GLEAN mRNA 148308 148374 0.49961 - . ID=CGI_10009888; scaffold1850 TRF Tandem_Repeat 148308 148374 89 + . . scaffold1850 GLEAN mRNA 148869 148902 0.49961 - . ID=CGI_10009888; scaffold1850 TRF Tandem_Repeat 148869 148902 50 + . . scaffold1850 GLEAN mRNA 154783 154808 1 - . ID=CGI_10009889; scaffold1850 TRF Tandem_Repeat 154783 154808 52 + . . scaffold1850 GLEAN mRNA 172751 172840 0.999905 - . ID=CGI_10009890; scaffold1850 TRF Tandem_Repeat 172751 172840 146 + . . scaffold1850 GLEAN mRNA 198213 198579 0.989701 + . ID=CGI_10009891; scaffold1850 TRF Tandem_Repeat 198213 198579 671 + . . scaffold603 GLEAN mRNA 18167 18421 0.533291 - . ID=CGI_10009894; scaffold603 WUBlastX LINE_L1 18167 18421 101 - . . scaffold603 GLEAN mRNA 17018 17824 0.533291 - . ID=CGI_10009894; scaffold603 WUBlastX LINE_L1-Tx1 17018 17824 231 - . . scaffold603 GLEAN mRNA 17883 18185 0.533291 - . ID=CGI_10009894; scaffold603 WUBlastX LINE_L1-Tx1 17883 18185 212 - . . scaffold603 GLEAN mRNA 18439 19599 0.533291 - . ID=CGI_10009894; scaffold603 WUBlastX LINE_L1-Tx1 18439 19599 151 - . . scaffold603 GLEAN mRNA 19277 19675 0.533291 - . ID=CGI_10009894; scaffold603 WUBlastX LINE_L1 19277 19675 35 - . . scaffold603 GLEAN mRNA 16477 16758 0.533291 - . ID=CGI_10009894; scaffold603 WUBlastX LINE_L1 16477 16758 41 - . . scaffold603 GLEAN mRNA 16504 16830 0.533291 - . ID=CGI_10009894; scaffold603 WUBlastX LINE_L1 16504 16830 31 - . . scaffold603 GLEAN mRNA 20352 20453 0.533291 - . ID=CGI_10009894; scaffold603 WUBlastX LINE_L1 20352 20453 23 - . . scaffold603 GLEAN mRNA 78288 78551 0.999999 + . ID=CGI_10009899; scaffold603 WUBlastX DNA_Crypton 78288 78551 62 + . . scaffold603 GLEAN mRNA 81806 81860 0.361809 - . ID=CGI_10009900; scaffold603 TRF Tandem_Repeat 81806 81860 65 + . . scaffold603 GLEAN mRNA 81802 81861 0.361809 - . ID=CGI_10009900; scaffold603 TRF Tandem_Repeat 81802 81861 75 + . . scaffold603 GLEAN mRNA 90196 91215 0.361809 - . ID=CGI_10009900; scaffold603 TRF Tandem_Repeat 90196 91215 1514 + . . scaffold603 GLEAN mRNA 91377 91426 0.361809 - . ID=CGI_10009900; scaffold603 TRF Tandem_Repeat 91377 91426 57 + . . scaffold603 GLEAN mRNA 93035 93205 0.361809 - . ID=CGI_10009900; scaffold603 TRF Tandem_Repeat 93035 93205 147 + . . scaffold603 GLEAN mRNA 107373 107410 0.808691 - . ID=CGI_10009901; scaffold603 TRF Tandem_Repeat 107373 107410 76 + . . scaffold603 GLEAN mRNA 117634 117688 0.808691 - . ID=CGI_10009901; scaffold603 TRF Tandem_Repeat 117634 117688 67 + . . scaffold603 GLEAN mRNA 118388 118422 0.808691 - . ID=CGI_10009901; scaffold603 TRF Tandem_Repeat 118388 118422 70 + . . scaffold603 GLEAN mRNA 119110 119163 0.808691 - . ID=CGI_10009901; scaffold603 TRF Tandem_Repeat 119110 119163 101 + . . scaffold603 GLEAN mRNA 120952 120988 0.808691 - . ID=CGI_10009901; scaffold603 TRF Tandem_Repeat 120952 120988 74 + . . scaffold603 GLEAN mRNA 146538 146576 0.999351 - . ID=CGI_10009903; scaffold603 TRF Tandem_Repeat 146538 146576 60 + . . scaffold603 GLEAN mRNA 146538 146576 0.280956 + . ID=CGI_10009904; scaffold603 TRF Tandem_Repeat 146538 146576 60 + . . scaffold603 GLEAN mRNA 156040 156377 0.280956 + . ID=CGI_10009904; scaffold603 TRF Tandem_Repeat 156040 156377 441 + . . scaffold603 GLEAN mRNA 161275 161379 1 - . ID=CGI_10009905; scaffold603 WUBlastX LTR_DIRS 161275 161379 60 + . . scaffold603 GLEAN mRNA 183605 183657 0.971948 + . ID=CGI_10009907; scaffold603 TRF Tandem_Repeat 183605 183657 106 + . . scaffold603 GLEAN mRNA 191344 191406 0.971948 + . ID=CGI_10009907; scaffold603 TRF Tandem_Repeat 191344 191406 76 + . . scaffold603 GLEAN mRNA 195215 195251 0.971948 + . ID=CGI_10009907; scaffold603 TRF Tandem_Repeat 195215 195251 65 + . . scaffold603 GLEAN mRNA 195725 195814 0.971948 + . ID=CGI_10009907; scaffold603 TRF Tandem_Repeat 195725 195814 99 + . . scaffold603 GLEAN mRNA 183605 183657 0.996062 - . ID=CGI_10009908; scaffold603 TRF Tandem_Repeat 183605 183657 106 + . . scaffold603 GLEAN mRNA 191344 191406 1 - . ID=CGI_10009910; scaffold603 TRF Tandem_Repeat 191344 191406 76 + . . scaffold603 GLEAN mRNA 195215 195251 1 - . ID=CGI_10009910; scaffold603 TRF Tandem_Repeat 195215 195251 65 + . . scaffold603 GLEAN mRNA 195725 195814 1 - . ID=CGI_10009910; scaffold603 TRF Tandem_Repeat 195725 195814 99 + . . scaffold603 GLEAN mRNA 199381 199425 0.998866 + . ID=CGI_10009911; scaffold603 TRF Tandem_Repeat 199381 199425 90 + . . scaffold603 GLEAN mRNA 208118 208203 0.959591 - . ID=CGI_10009912; scaffold603 TRF Tandem_Repeat 208118 208203 100 + . . scaffold603 GLEAN mRNA 209621 209711 0.959591 - . ID=CGI_10009912; scaffold603 TRF Tandem_Repeat 209621 209711 146 + . . scaffold577 GLEAN mRNA 67268 67323 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 67268 67323 112 + . . scaffold577 GLEAN mRNA 68488 68804 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 68488 68804 440 + . . scaffold577 GLEAN mRNA 69196 69253 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 69196 69253 64 + . . scaffold577 GLEAN mRNA 70807 70874 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 70807 70874 55 + . . scaffold577 GLEAN mRNA 70822 70854 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 70822 70854 57 + . . scaffold577 GLEAN mRNA 72052 72101 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 72052 72101 63 + . . scaffold577 GLEAN mRNA 72045 72101 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 72045 72101 71 + . . scaffold577 GLEAN mRNA 77248 77292 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 77248 77292 90 + . . scaffold577 GLEAN mRNA 78616 78763 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 78616 78763 224 + . . scaffold577 GLEAN mRNA 80921 81136 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 80921 81136 245 + . . scaffold577 GLEAN mRNA 81734 81791 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 81734 81791 62 + . . scaffold577 GLEAN mRNA 81737 81801 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 81737 81801 51 + . . scaffold577 GLEAN mRNA 81987 82213 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 81987 82213 355 + . . scaffold577 GLEAN mRNA 83980 84220 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 83980 84220 302 + . . scaffold577 GLEAN mRNA 86560 86607 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 86560 86607 73 + . . scaffold577 GLEAN mRNA 87549 87606 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 87549 87606 53 + . . scaffold577 GLEAN mRNA 89783 89829 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 89783 89829 67 + . . scaffold577 GLEAN mRNA 89845 89903 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 89845 89903 102 + . . scaffold577 GLEAN mRNA 89875 90062 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 89875 90062 154 + . . scaffold577 GLEAN mRNA 114977 115249 0.999451 + . ID=CGI_10009917; scaffold577 WUBlastX LTR_DIRS 114971 115249 80 + . . scaffold577 GLEAN mRNA 123464 123510 0.72743 - . ID=CGI_10009918; scaffold577 TRF Tandem_Repeat 123464 123510 55 + . . scaffold577 GLEAN mRNA 125461 125541 0.72743 - . ID=CGI_10009918; scaffold577 TRF Tandem_Repeat 125461 125541 135 + . . scaffold577 GLEAN mRNA 126235 126375 0.72743 - . ID=CGI_10009918; scaffold577 TRF Tandem_Repeat 126235 126375 98 + . . scaffold577 GLEAN mRNA 131392 131581 0.72743 - . ID=CGI_10009918; scaffold577 TRF Tandem_Repeat 131392 131581 229 + . . scaffold577 GLEAN mRNA 163048 163101 0.72743 - . ID=CGI_10009918; scaffold577 TRF Tandem_Repeat 163048 163101 55 + . . scaffold577 GLEAN mRNA 148512 148793 0.72743 - . ID=CGI_10009918; scaffold577 WUBlastX DNA_hAT-Blackja 148512 148793 68 + . . scaffold577 GLEAN mRNA 150467 150688 0.72743 - . ID=CGI_10009918; scaffold577 WUBlastX DNA_hAT-Blackja 150467 150688 29 + . . scaffold577 GLEAN mRNA 164019 164052 0.72743 - . ID=CGI_10009918; scaffold577 TRF Tandem_Repeat 164019 164052 50 + . . scaffold577 GLEAN mRNA 166254 166323 0.72743 - . ID=CGI_10009918; scaffold577 TRF Tandem_Repeat 166254 166323 122 + . . scaffold577 GLEAN mRNA 167796 167845 0.72743 - . ID=CGI_10009918; scaffold577 TRF Tandem_Repeat 167796 167845 57 + . . scaffold577 GLEAN mRNA 168681 168726 0.72743 - . ID=CGI_10009918; scaffold577 TRF Tandem_Repeat 168681 168726 67 + . . scaffold577 GLEAN mRNA 168678 168731 0.72743 - . ID=CGI_10009918; scaffold577 TRF Tandem_Repeat 168678 168731 67 + . . scaffold577 GLEAN mRNA 172528 172569 0.72743 - . ID=CGI_10009918; scaffold577 TRF Tandem_Repeat 172528 172569 59 + . . scaffold577 GLEAN mRNA 182196 182564 0.72743 - . ID=CGI_10009918; scaffold577 WUBlastX DNA_Harbinger 182196 182564 383 + . . scaffold577 GLEAN mRNA 182642 183133 0.72743 - . ID=CGI_10009918; scaffold577 WUBlastX DNA_Harbinger 182642 183133 328 + . . scaffold577 GLEAN mRNA 227024 227116 1 - . ID=CGI_10009919; scaffold577 TRF Tandem_Repeat 227024 227116 57 + . . scaffold577 GLEAN mRNA 228337 228543 1 - . ID=CGI_10009919; scaffold577 TRF Tandem_Repeat 228337 228543 157 + . . scaffold43340 GLEAN mRNA 27288 27322 0.999675 + . ID=CGI_10009921; scaffold43340 TRF Tandem_Repeat 27288 27322 70 + . . scaffold43340 GLEAN mRNA 189651 189676 0.543968 + . ID=CGI_10009930; scaffold43340 TRF Tandem_Repeat 189651 189676 52 + . . scaffold43340 GLEAN mRNA 190244 190277 0.543968 + . ID=CGI_10009930; scaffold43340 TRF Tandem_Repeat 190244 190277 68 + . . scaffold43340 GLEAN mRNA 192001 192070 0.543968 + . ID=CGI_10009930; scaffold43340 TRF Tandem_Repeat 192001 192070 140 + . . scaffold43340 GLEAN mRNA 228836 228892 1 - . ID=CGI_10009933; scaffold43340 TRF Tandem_Repeat 228836 228892 53 + . . scaffold43340 GLEAN mRNA 228745 229014 1 - . ID=CGI_10009933; scaffold43340 TRF Tandem_Repeat 228745 229014 193 + . . scaffold43340 GLEAN mRNA 229085 229198 1 - . ID=CGI_10009933; scaffold43340 TRF Tandem_Repeat 229085 229198 128 + . . scaffold43340 GLEAN mRNA 228968 229249 1 - . ID=CGI_10009933; scaffold43340 TRF Tandem_Repeat 228968 229249 165 + . . scaffold1349 GLEAN mRNA 77014 77473 0.67921 + . ID=CGI_10009936; scaffold1349 TRF Tandem_Repeat 77014 77473 659 + . . scaffold1349 GLEAN mRNA 82669 82702 0.67921 + . ID=CGI_10009936; scaffold1349 TRF Tandem_Repeat 82669 82702 68 + . . scaffold1349 GLEAN mRNA 101255 101725 0.988431 - . ID=CGI_10009938; scaffold1349 WUBlastX LINE_L2 101255 101725 74 + . . scaffold1349 GLEAN mRNA 101342 101686 0.988431 - . ID=CGI_10009938; scaffold1349 WUBlastX LINE_CR1-L2 101342 101686 96 + . . scaffold1349 GLEAN mRNA 155751 155784 0.538893 - . ID=CGI_10009942; scaffold1349 TRF Tandem_Repeat 155751 155784 50 + . . scaffold1349 GLEAN mRNA 157703 157748 0.538893 - . ID=CGI_10009942; scaffold1349 TRF Tandem_Repeat 157703 157748 92 + . . scaffold1349 GLEAN mRNA 156491 156592 0.538893 - . ID=CGI_10009942; scaffold1349 WUBlastX LINE_L2 156491 156592 30 - . . scaffold1349 GLEAN mRNA 156744 156908 0.538893 - . ID=CGI_10009942; scaffold1349 WUBlastX LINE_L2 156744 156908 34 - . . scaffold1349 GLEAN mRNA 210563 210636 0.305208 - . ID=CGI_10009943; scaffold1349 TRF Tandem_Repeat 210563 210636 118 + . . scaffold1349 GLEAN mRNA 216711 216759 0.305208 - . ID=CGI_10009943; scaffold1349 TRF Tandem_Repeat 216711 216759 98 + . . scaffold1349 GLEAN mRNA 228528 228615 0.305208 - . ID=CGI_10009943; scaffold1349 TRF Tandem_Repeat 228528 228615 169 + . . scaffold1707 GLEAN mRNA 1578 1637 0.999999 - . ID=CGI_10009945; scaffold1707 WUBlastX DNA_TcMar-Tc1 1578 1637 24 - . . scaffold1707 GLEAN mRNA 1840 1986 0.999999 - . ID=CGI_10009945; scaffold1707 WUBlastX DNA_TcMar-Tc1 1840 1986 72 - . . scaffold1707 GLEAN mRNA 26313 26392 0.107162 + . ID=CGI_10009947; scaffold1707 TRF Tandem_Repeat 26313 26392 133 + . . scaffold1707 GLEAN mRNA 28234 28363 0.107162 + . ID=CGI_10009947; scaffold1707 TRF Tandem_Repeat 28234 28363 113 + . . scaffold1707 GLEAN mRNA 28234 28363 0.107162 + . ID=CGI_10009947; scaffold1707 TRF Tandem_Repeat 28234 28363 129 + . . scaffold1707 GLEAN mRNA 41538 41595 0.107162 + . ID=CGI_10009947; scaffold1707 TRF Tandem_Repeat 41538 41595 93 + . . scaffold1707 GLEAN mRNA 133589 133616 0.946308 - . ID=CGI_10009952; scaffold1707 TRF Tandem_Repeat 133589 133616 56 + . . scaffold986 GLEAN mRNA 23085 23124 0.247215 + . ID=CGI_10009956; scaffold986 TRF Tandem_Repeat 23085 23124 80 + . . scaffold986 GLEAN mRNA 42345 42398 0.15443 + . ID=CGI_10009957; scaffold986 TRF Tandem_Repeat 42345 42398 99 + . . scaffold986 GLEAN mRNA 49037 49089 0.15443 + . ID=CGI_10009957; scaffold986 TRF Tandem_Repeat 49037 49089 97 + . . scaffold986 GLEAN mRNA 46142 46516 0.15443 + . ID=CGI_10009957; scaffold986 WUBlastX DNA_hAT-Ac 46142 46516 38 + . . scaffold986 GLEAN mRNA 46677 47051 0.15443 + . ID=CGI_10009957; scaffold986 WUBlastX DNA_hAT-Ac 46677 47051 187 + . . scaffold986 GLEAN mRNA 46590 47048 0.15443 + . ID=CGI_10009957; scaffold986 WUBlastX DNA_hAT-Ac 46590 47048 157 + . . scaffold986 GLEAN mRNA 52551 52802 0.15443 + . ID=CGI_10009957; scaffold986 WUBlastX DNA_TcMar-Tc1 52551 52802 76 - . . scaffold986 GLEAN mRNA 128189 128417 0.953283 + . ID=CGI_10009959; scaffold986 TRF Tandem_Repeat 128189 128417 166 + . . scaffold986 GLEAN mRNA 128197 128453 0.953283 + . ID=CGI_10009959; scaffold986 TRF Tandem_Repeat 128197 128453 121 + . . scaffold986 GLEAN mRNA 128631 128774 0.953283 + . ID=CGI_10009959; scaffold986 TRF Tandem_Repeat 128631 128774 120 + . . scaffold986 GLEAN mRNA 128695 128932 0.953283 + . ID=CGI_10009959; scaffold986 TRF Tandem_Repeat 128695 128932 245 + . . scaffold986 GLEAN mRNA 128631 128922 0.953283 + . ID=CGI_10009959; scaffold986 TRF Tandem_Repeat 128631 128922 221 + . . scaffold986 GLEAN mRNA 131192 131352 0.953283 + . ID=CGI_10009959; scaffold986 TRF Tandem_Repeat 131192 131352 205 + . . scaffold986 GLEAN mRNA 138060 138096 0.877811 + . ID=CGI_10009960; scaffold986 TRF Tandem_Repeat 138060 138096 74 + . . scaffold986 GLEAN mRNA 137234 137431 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 137234 137431 61 - . . scaffold986 GLEAN mRNA 137571 137768 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 137571 137768 117 - . . scaffold986 GLEAN mRNA 137855 137941 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 137855 137941 53 - . . scaffold986 GLEAN mRNA 138128 138250 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 138128 138250 82 - . . scaffold986 GLEAN mRNA 137804 137941 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 137804 137941 20 - . . scaffold986 GLEAN mRNA 138790 139134 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 138790 139134 131 - . . scaffold986 GLEAN mRNA 136279 136446 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 136279 136446 49 + . . scaffold986 GLEAN mRNA 138128 138277 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 138128 138277 55 - . . scaffold986 GLEAN mRNA 138760 139170 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 138760 139170 99 - . . scaffold986 GLEAN mRNA 137831 137971 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 137831 137971 51 - . . scaffold986 GLEAN mRNA 138104 138244 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 138104 138244 20 - . . scaffold986 GLEAN mRNA 207101 207125 0.914142 - . ID=CGI_10009964; scaffold986 TRF Tandem_Repeat 207101 207125 50 + . . scaffold986 GLEAN mRNA 230698 231089 0.889891 - . ID=CGI_10009965; scaffold986 TRF Tandem_Repeat 230698 231089 741 + . . scaffold986 GLEAN mRNA 233195 234226 0.889891 - . ID=CGI_10009965; scaffold986 WUBlastX LINE_Proto2 233195 234226 99 - . . scaffold986 GLEAN mRNA 232752 233096 0.889891 - . ID=CGI_10009965; scaffold986 WUBlastX LINE_RTE-X 232752 233096 21 - . . scaffold986 GLEAN mRNA 233183 233791 0.889891 - . ID=CGI_10009965; scaffold986 WUBlastX LINE_L1 233183 233791 106 - . . scaffold986 GLEAN mRNA 233183 233623 0.889891 - . ID=CGI_10009965; scaffold986 WUBlastX LINE_L1 233183 233623 112 - . . scaffold986 GLEAN mRNA 233180 233962 0.889891 - . ID=CGI_10009965; scaffold986 WUBlastX LINE_Jockey 233180 233962 99 - . . scaffold986 GLEAN mRNA 232839 233090 0.889891 - . ID=CGI_10009965; scaffold986 WUBlastX LINE_RTE-BovB 232839 233090 74 - . . scaffold986 GLEAN mRNA 232818 233171 0.889891 - . ID=CGI_10009965; scaffold986 WUBlastX LINE_RTE-X 232818 233171 72 - . . scaffold43358 GLEAN mRNA 14744 15116 0.968059 - . ID=CGI_10009967; scaffold43358 TRF Tandem_Repeat 14744 15116 439 + . . scaffold43358 GLEAN mRNA 73471 73737 0.994914 + . ID=CGI_10009973; scaffold43358 TRF Tandem_Repeat 73471 73737 444 + . . scaffold43358 GLEAN mRNA 92474 92527 0.999999 + . ID=CGI_10009975; scaffold43358 TRF Tandem_Repeat 92474 92527 108 + . . scaffold43358 GLEAN mRNA 102367 102407 0.999999 + . ID=CGI_10009975; scaffold43358 TRF Tandem_Repeat 102367 102407 66 + . . scaffold43358 GLEAN mRNA 133879 134802 0.949704 + . ID=CGI_10009976; scaffold43358 WUBlastX LTR_Gypsy 133879 134802 708 + . . scaffold43358 GLEAN mRNA 133879 134970 0.949704 + . ID=CGI_10009976; scaffold43358 WUBlastX LTR_Gypsy 133879 134970 137 + . . scaffold43358 GLEAN mRNA 169044 169531 0.919817 + . ID=CGI_10009977; scaffold43358 TRF Tandem_Repeat 169044 169531 720 + . . scaffold43358 GLEAN mRNA 205717 205770 0.912049 + . ID=CGI_10009979; scaffold43358 TRF Tandem_Repeat 205717 205770 108 + . . scaffold43358 GLEAN mRNA 219389 219604 0.593251 - . ID=CGI_10009980; scaffold43358 WUBlastX DNA_IS4EU 219389 220018 62 - . . scaffold43358 GLEAN mRNA 219021 219146 0.593251 - . ID=CGI_10009980; scaffold43358 WUBlastX DNA_IS4EU 219021 219146 36 - . . scaffold43366 GLEAN mRNA 18590 18727 0.671891 + . ID=CGI_10009982; scaffold43366 TRF Tandem_Repeat 18590 18727 123 + . . scaffold43366 GLEAN mRNA 20070 20164 0.671891 + . ID=CGI_10009982; scaffold43366 TRF Tandem_Repeat 20070 20164 111 + . . scaffold43366 GLEAN mRNA 20112 20224 0.671891 + . ID=CGI_10009982; scaffold43366 TRF Tandem_Repeat 20112 20224 66 + . . scaffold43366 GLEAN mRNA 20252 20392 0.671891 + . ID=CGI_10009982; scaffold43366 TRF Tandem_Repeat 20252 20392 97 + . . scaffold43366 GLEAN mRNA 21257 21309 0.671891 + . ID=CGI_10009982; scaffold43366 TRF Tandem_Repeat 21257 21309 106 + . . scaffold43366 GLEAN mRNA 52135 52194 0.671891 + . ID=CGI_10009982; scaffold43366 TRF Tandem_Repeat 52135 52194 120 + . . scaffold43366 GLEAN mRNA 53954 54022 0.671891 + . ID=CGI_10009982; scaffold43366 TRF Tandem_Repeat 53954 54022 138 + . . scaffold43366 GLEAN mRNA 68105 68272 0.671891 + . ID=CGI_10009982; scaffold43366 WUBlastX LINE_RTE-BovB 68105 68272 101 + . . scaffold43366 GLEAN mRNA 161620 161664 0.660632 - . ID=CGI_10009989; scaffold43366 TRF Tandem_Repeat 161620 161664 90 + . . scaffold43366 GLEAN mRNA 204663 204736 0.801348 - . ID=CGI_10009993; scaffold43366 TRF Tandem_Repeat 204663 204736 148 + . . scaffold43366 GLEAN mRNA 204673 204733 0.801348 - . ID=CGI_10009993; scaffold43366 TRF Tandem_Repeat 204673 204733 59 + . . scaffold43366 GLEAN mRNA 208896 208986 0.801348 - . ID=CGI_10009993; scaffold43366 TRF Tandem_Repeat 208896 208986 146 + . . scaffold43366 GLEAN mRNA 208952 209041 0.801348 - . ID=CGI_10009993; scaffold43366 TRF Tandem_Repeat 208952 209041 99 + . . scaffold43366 GLEAN mRNA 210516 210622 0.801348 - . ID=CGI_10009993; scaffold43366 TRF Tandem_Repeat 210516 210622 142 + . . scaffold1217 GLEAN mRNA 93483 93843 0.998245 - . ID=CGI_10009994; scaffold1217 TRF Tandem_Repeat 93483 93843 502 + . . scaffold1217 GLEAN mRNA 134003 134056 0.739794 + . ID=CGI_10009995; scaffold1217 WUBlastX LTR_Gypsy 134003 134056 28 + . . scaffold1217 GLEAN mRNA 134139 134181 0.739794 + . ID=CGI_10009995; scaffold1217 WUBlastX LTR_Gypsy-Cigr 134139 134561 48 + . . scaffold1217 GLEAN mRNA 133246 133965 0.739794 + . ID=CGI_10009995; scaffold1217 WUBlastX LTR_Gypsy 133246 133965 176 + . . scaffold1217 GLEAN mRNA 167759 167801 0.446428 + . ID=CGI_10009997; scaffold1217 TRF Tandem_Repeat 167759 167801 86 + . . scaffold1217 GLEAN mRNA 181274 181316 0.499207 - . ID=CGI_10009998; scaffold1217 TRF Tandem_Repeat 181274 181316 86 + . . scaffold1217 GLEAN mRNA 194372 194410 0.628071 + . ID=CGI_10009999; scaffold1217 TRF Tandem_Repeat 194372 194410 51 + . . scaffold1217 GLEAN mRNA 196609 196664 0.628071 + . ID=CGI_10009999; scaffold1217 TRF Tandem_Repeat 196609 196664 112 + . . scaffold1217 GLEAN mRNA 194372 194410 0.999662 - . ID=CGI_10010000; scaffold1217 TRF Tandem_Repeat 194372 194410 51 + . . scaffold1217 GLEAN mRNA 196609 196664 0.999662 - . ID=CGI_10010000; scaffold1217 TRF Tandem_Repeat 196609 196664 112 + . . scaffold1217 GLEAN mRNA 201405 201441 0.999662 - . ID=CGI_10010000; scaffold1217 TRF Tandem_Repeat 201405 201441 74 + . . scaffold1217 GLEAN mRNA 201911 201939 0.999662 - . ID=CGI_10010000; scaffold1217 TRF Tandem_Repeat 201911 201939 58 + . . scaffold143 GLEAN mRNA 19430 19747 0.985197 + . ID=CGI_10010006; scaffold143 WUBlastX LTR_Gypsy 19430 19747 63 - . . scaffold143 GLEAN mRNA 19806 20975 0.985197 + . ID=CGI_10010006; scaffold143 WUBlastX LTR_Gypsy 19806 20975 1055 - . . scaffold143 GLEAN mRNA 20900 22741 0.985197 + . ID=CGI_10010006; scaffold143 WUBlastX LTR_Gypsy 20900 22741 1581 - . . scaffold143 GLEAN mRNA 19644 20459 0.985197 + . ID=CGI_10010006; scaffold143 WUBlastX LTR_Gypsy 19644 20459 147 - . . scaffold143 GLEAN mRNA 19610 19759 0.985197 + . ID=CGI_10010006; scaffold143 WUBlastX LTR_Gypsy 19610 19759 66 - . . scaffold143 GLEAN mRNA 46216 46279 0.728522 + . ID=CGI_10010007; scaffold143 TRF Tandem_Repeat 46216 46279 121 + . . scaffold143 GLEAN mRNA 40035 40277 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 40035 40277 181 - . . scaffold143 GLEAN mRNA 40226 41227 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 40226 41227 975 - . . scaffold143 GLEAN mRNA 41239 42708 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 41239 42708 1406 - . . scaffold143 GLEAN mRNA 42980 43483 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 42980 43483 480 - . . scaffold143 GLEAN mRNA 42860 43432 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 42860 43432 262 - . . scaffold143 GLEAN mRNA 42735 42983 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 42735 42983 37 - . . scaffold143 GLEAN mRNA 39863 39982 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 39863 39982 20 - . . scaffold143 GLEAN mRNA 39951 40265 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 39951 40265 44 - . . scaffold143 GLEAN mRNA 39882 40259 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 39882 40259 27 - . . scaffold143 GLEAN mRNA 57442 57493 0.728522 + . ID=CGI_10010007; scaffold143 TRF Tandem_Repeat 57442 57493 97 + . . scaffold143 GLEAN mRNA 59195 59353 0.728522 + . ID=CGI_10010007; scaffold143 TRF Tandem_Repeat 59195 59353 196 + . . scaffold143 GLEAN mRNA 65790 65959 0.728522 + . ID=CGI_10010007; scaffold143 TRF Tandem_Repeat 65790 65959 208 + . . scaffold143 GLEAN mRNA 65791 65961 0.728522 + . ID=CGI_10010007; scaffold143 TRF Tandem_Repeat 65791 65961 195 + . . scaffold143 GLEAN mRNA 65790 65961 0.728522 + . ID=CGI_10010007; scaffold143 TRF Tandem_Repeat 65790 65961 215 + . . scaffold143 GLEAN mRNA 66788 66870 0.728522 + . ID=CGI_10010007; scaffold143 TRF Tandem_Repeat 66788 66870 139 + . . scaffold143 GLEAN mRNA 68649 68713 0.728522 + . ID=CGI_10010007; scaffold143 TRF Tandem_Repeat 68649 68713 130 + . . scaffold143 GLEAN mRNA 73259 75634 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 73259 75634 2051 + . . scaffold143 GLEAN mRNA 79955 80164 0.986676 - . ID=CGI_10010008; scaffold143 WUBlastX LTR_Gypsy 79955 80392 53 - . . scaffold143 GLEAN mRNA 80244 80516 0.776794 - . ID=CGI_10010009; scaffold143 WUBlastX LTR_Gypsy 80244 80543 54 - . . scaffold143 GLEAN mRNA 80214 80392 0.776794 - . ID=CGI_10010009; scaffold143 WUBlastX LTR_Gypsy 79955 80392 53 - . . scaffold143 GLEAN mRNA 117839 118172 0.354657 - . ID=CGI_10010011; scaffold143 TRF Tandem_Repeat 117839 118172 551 + . . scaffold143 GLEAN mRNA 120708 121016 0.354657 - . ID=CGI_10010011; scaffold143 TRF Tandem_Repeat 120708 121016 501 + . . scaffold143 GLEAN mRNA 117839 118172 0.999949 + . ID=CGI_10010012; scaffold143 TRF Tandem_Repeat 117839 118172 551 + . . scaffold143 GLEAN mRNA 120708 121016 0.999949 + . ID=CGI_10010012; scaffold143 TRF Tandem_Repeat 120708 121016 501 + . . scaffold143 GLEAN mRNA 147194 147349 0.999949 + . ID=CGI_10010012; scaffold143 WUBlastX LINE_RTE-X 147194 147349 25 - . . scaffold143 GLEAN mRNA 147254 147361 0.999949 + . ID=CGI_10010012; scaffold143 WUBlastX LINE_RTE-X 147254 147361 41 - . . scaffold143 GLEAN mRNA 147363 147521 0.999949 + . ID=CGI_10010012; scaffold143 WUBlastX LINE_RTE-X 147363 147521 22 - . . scaffold143 GLEAN mRNA 154990 155056 0.999598 - . ID=CGI_10010014; scaffold143 TRF Tandem_Repeat 154990 155056 80 + . . scaffold143 GLEAN mRNA 154998 155056 0.999598 - . ID=CGI_10010014; scaffold143 TRF Tandem_Repeat 154998 155056 73 + . . scaffold143 GLEAN mRNA 155309 156631 0.999598 - . ID=CGI_10010014; scaffold143 TRF Tandem_Repeat 155309 156631 1608 + . . scaffold143 GLEAN mRNA 158355 158410 0.999598 - . ID=CGI_10010014; scaffold143 TRF Tandem_Repeat 158355 158410 60 + . . scaffold143 GLEAN mRNA 158683 158717 0.999598 - . ID=CGI_10010014; scaffold143 TRF Tandem_Repeat 158683 158717 70 + . . scaffold143 GLEAN mRNA 169963 170011 0.789583 - . ID=CGI_10010015; scaffold143 TRF Tandem_Repeat 169610 170011 547 + . . scaffold143 GLEAN mRNA 175577 175970 0.789583 - . ID=CGI_10010015; scaffold143 TRF Tandem_Repeat 175577 175970 636 + . . scaffold143 GLEAN mRNA 186642 186685 0.789583 - . ID=CGI_10010015; scaffold143 TRF Tandem_Repeat 186642 186685 88 + . . scaffold143 GLEAN mRNA 189670 189719 0.789583 - . ID=CGI_10010015; scaffold143 TRF Tandem_Repeat 189670 189719 100 + . . scaffold143 GLEAN mRNA 192071 192775 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L1 192071 192775 139 - . . scaffold143 GLEAN mRNA 186017 186073 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_RTE-BovB 186017 186073 20 - . . scaffold143 GLEAN mRNA 194480 195148 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L2 194480 195148 117 - . . scaffold143 GLEAN mRNA 190207 190596 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L1 190207 190596 57 - . . scaffold143 GLEAN mRNA 186962 187366 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L1-Tx1 186962 187366 106 - . . scaffold143 GLEAN mRNA 187964 188143 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L1 187964 188143 89 - . . scaffold143 GLEAN mRNA 186896 187309 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L1-Tx1 186896 187309 105 - . . scaffold143 GLEAN mRNA 193069 193398 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L1-Tx1 193069 193398 102 - . . scaffold143 GLEAN mRNA 193769 194134 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L1-Tx1 193769 194134 279 - . . scaffold143 GLEAN mRNA 186818 187315 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L1-Tx1 186818 187315 90 - . . scaffold143 GLEAN mRNA 182843 185035 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L1-Tx1 182843 185035 872 - . . scaffold143 GLEAN mRNA 190279 190581 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L1-Tx1 190279 190581 162 - . . scaffold143 GLEAN mRNA 194591 195247 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L2 194591 195247 27 - . . scaffold143 GLEAN mRNA 184613 185119 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_Tad1? 184613 185119 68 - . . scaffold143 GLEAN mRNA 193162 193410 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L1-Tx1 193162 193410 154 - . . scaffold143 GLEAN mRNA 181851 181916 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L1 181851 181916 21 - . . scaffold143 GLEAN mRNA 192032 192910 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LINE_L1 192032 192910 36 - . . scaffold143 GLEAN mRNA 212235 212951 0.564856 - . ID=CGI_10010016; scaffold143 WUBlastX LINE_L1 212235 212951 218 - . . scaffold143 GLEAN mRNA 211939 212244 0.564856 - . ID=CGI_10010016; scaffold143 WUBlastX LINE_L1 211828 212244 34 - . . scaffold143 GLEAN mRNA 211984 212277 0.564856 - . ID=CGI_10010016; scaffold143 WUBlastX LINE_L1-Tx1 211984 212277 174 - . . scaffold143 GLEAN mRNA 212310 212912 0.564856 - . ID=CGI_10010016; scaffold143 WUBlastX LINE_L1-Tx1 212310 212912 412 - . . scaffold143 GLEAN mRNA 211939 212289 0.564856 - . ID=CGI_10010016; scaffold143 WUBlastX LINE_L1-Tx1 211891 212289 78 - . . scaffold143 GLEAN mRNA 213120 213173 0.564856 - . ID=CGI_10010016; scaffold143 TRF Tandem_Repeat 213120 213173 108 + . . scaffold143 GLEAN mRNA 219236 219372 0.564856 - . ID=CGI_10010016; scaffold143 TRF Tandem_Repeat 219236 219372 96 + . . scaffold143 GLEAN mRNA 219261 219393 0.564856 - . ID=CGI_10010016; scaffold143 TRF Tandem_Repeat 219261 219393 70 + . . scaffold143 GLEAN mRNA 219677 219715 0.564856 - . ID=CGI_10010016; scaffold143 TRF Tandem_Repeat 219677 219715 51 + . . scaffold143 GLEAN mRNA 215168 215515 0.564856 - . ID=CGI_10010016; scaffold143 WUBlastX LINE_CR1-L2 215168 215515 117 + . . scaffold143 GLEAN mRNA 215096 215515 0.564856 - . ID=CGI_10010016; scaffold143 WUBlastX LINE_CR1-L2 215096 215515 88 + . . scaffold143 GLEAN mRNA 215000 215515 0.564856 - . ID=CGI_10010016; scaffold143 WUBlastX LINE_CR1-L2 215000 215515 59 + . . scaffold143 GLEAN mRNA 215288 215515 0.564856 - . ID=CGI_10010016; scaffold143 WUBlastX LINE_CR1-L2 215288 215515 118 + . . scaffold143 GLEAN mRNA 212505 213083 0.564856 - . ID=CGI_10010016; scaffold143 WUBlastX LINE_CR1 212505 213083 51 - . . scaffold143 GLEAN mRNA 219236 219372 0.812943 + . ID=CGI_10010017; scaffold143 TRF Tandem_Repeat 219236 219372 96 + . . scaffold143 GLEAN mRNA 219261 219393 0.812943 + . ID=CGI_10010017; scaffold143 TRF Tandem_Repeat 219261 219393 70 + . . scaffold143 GLEAN mRNA 219677 219715 0.812943 + . ID=CGI_10010017; scaffold143 TRF Tandem_Repeat 219677 219715 51 + . . scaffold143 GLEAN mRNA 221878 222395 0.812943 + . ID=CGI_10010017; scaffold143 TRF Tandem_Repeat 221878 222395 941 + . . scaffold143 GLEAN mRNA 233818 233873 0.648296 - . ID=CGI_10010018; scaffold143 TRF Tandem_Repeat 233818 233873 112 + . . scaffold143 GLEAN mRNA 234091 234306 0.648296 - . ID=CGI_10010018; scaffold143 TRF Tandem_Repeat 234091 234306 326 + . . scaffold143 GLEAN mRNA 234192 234265 0.648296 - . ID=CGI_10010018; scaffold143 TRF Tandem_Repeat 234192 234265 51 + . . scaffold143 GLEAN mRNA 239806 239870 0.648296 - . ID=CGI_10010018; scaffold143 TRF Tandem_Repeat 239806 239870 130 + . . scaffold143 GLEAN mRNA 241292 241349 0.648296 - . ID=CGI_10010018; scaffold143 TRF Tandem_Repeat 241292 241349 116 + . . scaffold208 GLEAN mRNA 8114 8166 1 + . ID=CGI_10010019; scaffold208 TRF Tandem_Repeat 8114 8166 106 + . . scaffold208 GLEAN mRNA 8898 8925 1 + . ID=CGI_10010019; scaffold208 TRF Tandem_Repeat 8898 8925 56 + . . scaffold208 GLEAN mRNA 82048 82085 0.999999 - . ID=CGI_10010022; scaffold208 TRF Tandem_Repeat 82048 82085 76 + . . scaffold208 GLEAN mRNA 92151 92177 0.999949 - . ID=CGI_10010023; scaffold208 TRF Tandem_Repeat 92151 92177 54 + . . scaffold208 GLEAN mRNA 98606 98646 1 - . ID=CGI_10010024; scaffold208 TRF Tandem_Repeat 98606 98646 82 + . . scaffold208 GLEAN mRNA 100716 100937 1 - . ID=CGI_10010024; scaffold208 TRF Tandem_Repeat 100716 100937 195 + . . scaffold208 GLEAN mRNA 100716 101148 1 - . ID=CGI_10010024; scaffold208 TRF Tandem_Repeat 100716 101148 201 + . . scaffold208 GLEAN mRNA 100933 101148 1 - . ID=CGI_10010024; scaffold208 TRF Tandem_Repeat 100933 101148 108 + . . scaffold208 GLEAN mRNA 104522 104552 1 - . ID=CGI_10010024; scaffold208 TRF Tandem_Repeat 104522 104552 62 + . . scaffold208 GLEAN mRNA 104755 104820 1 - . ID=CGI_10010024; scaffold208 TRF Tandem_Repeat 104755 104820 132 + . . scaffold208 GLEAN mRNA 116088 116228 1 - . ID=CGI_10010026; scaffold208 WUBlastX DNA_TcMar-Marin 116088 116228 31 + . . scaffold208 GLEAN mRNA 116088 116267 1 - . ID=CGI_10010026; scaffold208 WUBlastX DNA_TcMar-Marin 116088 116267 28 + . . scaffold208 GLEAN mRNA 122684 122902 1 - . ID=CGI_10010027; scaffold208 WUBlastX DNA_TcMar-Marin 122684 122902 20 + . . scaffold208 GLEAN mRNA 215036 215078 0.89947 - . ID=CGI_10010034; scaffold208 TRF Tandem_Repeat 215036 215078 50 + . . scaffold208 GLEAN mRNA 216102 216141 0.89947 - . ID=CGI_10010034; scaffold208 TRF Tandem_Repeat 216102 216141 80 + . . scaffold208 GLEAN mRNA 220214 220262 0.89947 - . ID=CGI_10010034; scaffold208 TRF Tandem_Repeat 220214 220262 98 + . . scaffold208 GLEAN mRNA 228814 229014 0.89947 - . ID=CGI_10010034; scaffold208 TRF Tandem_Repeat 228814 229014 276 + . . scaffold208 GLEAN mRNA 228826 229337 0.89947 - . ID=CGI_10010034; scaffold208 TRF Tandem_Repeat 228826 229337 390 + . . scaffold208 GLEAN mRNA 228814 229303 0.89947 - . ID=CGI_10010034; scaffold208 TRF Tandem_Repeat 228814 229303 362 + . . scaffold208 GLEAN mRNA 229100 229344 0.89947 - . ID=CGI_10010034; scaffold208 TRF Tandem_Repeat 229100 229344 220 + . . scaffold208 GLEAN mRNA 236573 236615 0.89947 - . ID=CGI_10010034; scaffold208 TRF Tandem_Repeat 236573 236615 50 + . . scaffold752 GLEAN mRNA 15788 16276 0.831804 + . ID=CGI_10010038; scaffold752 WUBlastX LINE_RTE-X 15788 16276 137 - . . scaffold752 GLEAN mRNA 15591 15773 0.831804 + . ID=CGI_10010038; scaffold752 WUBlastX LINE_RTE-X 15591 15773 41 - . . scaffold752 GLEAN mRNA 18804 18884 0.831804 + . ID=CGI_10010038; scaffold752 TRF Tandem_Repeat 18804 18884 90 + . . scaffold752 GLEAN mRNA 19778 19837 0.831804 + . ID=CGI_10010038; scaffold752 TRF Tandem_Repeat 19778 19837 50 + . . scaffold752 GLEAN mRNA 30302 30357 0.831804 + . ID=CGI_10010038; scaffold752 TRF Tandem_Repeat 30302 30357 78 + . . scaffold752 GLEAN mRNA 15848 16393 0.831804 + . ID=CGI_10010038; scaffold752 WUBlastX LINE_RTE-X 15848 16393 62 - . . scaffold752 GLEAN mRNA 51909 51973 0.925262 + . ID=CGI_10010039; scaffold752 TRF Tandem_Repeat 51909 51973 121 + . . scaffold752 GLEAN mRNA 60359 62125 0.925262 + . ID=CGI_10010039; scaffold752 TRF Tandem_Repeat 60359 62125 2507 + . . scaffold752 GLEAN mRNA 61128 61227 0.925262 + . ID=CGI_10010039; scaffold752 TRF Tandem_Repeat 61128 61227 68 + . . scaffold752 GLEAN mRNA 62224 62290 0.925262 + . ID=CGI_10010039; scaffold752 TRF Tandem_Repeat 62224 62290 57 + . . scaffold752 GLEAN mRNA 63741 63795 0.925262 + . ID=CGI_10010039; scaffold752 TRF Tandem_Repeat 63741 63795 56 + . . scaffold752 GLEAN mRNA 154076 154106 0.99952 - . ID=CGI_10010041; scaffold752 TRF Tandem_Repeat 154076 154106 62 + . . scaffold752 GLEAN mRNA 196783 197145 0.998504 + . ID=CGI_10010042; scaffold752 WUBlastX LTR_ERV1 196783 197145 32 + . . scaffold752 GLEAN mRNA 231492 231998 0.996081 + . ID=CGI_10010043; scaffold752 WUBlastX LTR_ERV1 231492 231998 38 + . . scaffold752 GLEAN mRNA 236204 236740 0.999984 + . ID=CGI_10010044; scaffold752 WUBlastX LTR_ERV1 236204 236740 21 + . . scaffold1227 GLEAN mRNA 27223 27266 0.458408 - . ID=CGI_10010047; scaffold1227 TRF Tandem_Repeat 27223 27266 88 + . . scaffold1227 GLEAN mRNA 79197 79274 0.841129 + . ID=CGI_10010049; scaffold1227 TRF Tandem_Repeat 79197 79274 131 + . . scaffold1227 GLEAN mRNA 84953 84987 0.841129 + . ID=CGI_10010049; scaffold1227 TRF Tandem_Repeat 84953 84987 70 + . . scaffold1227 GLEAN mRNA 134597 134752 0.53592 - . ID=CGI_10010051; scaffold1227 TRF Tandem_Repeat 134597 134752 278 + . . scaffold1227 GLEAN mRNA 134734 135010 0.53592 - . ID=CGI_10010051; scaffold1227 TRF Tandem_Repeat 134734 135010 355 + . . scaffold1227 GLEAN mRNA 134645 134983 0.53592 - . ID=CGI_10010051; scaffold1227 TRF Tandem_Repeat 134645 134983 298 + . . scaffold1227 GLEAN mRNA 137882 138064 0.53592 - . ID=CGI_10010051; scaffold1227 TRF Tandem_Repeat 137882 138064 330 + . . scaffold1227 GLEAN mRNA 162284 162346 0.881287 - . ID=CGI_10010053; scaffold1227 TRF Tandem_Repeat 162284 162346 108 + . . scaffold1227 GLEAN mRNA 168645 168722 0.881287 - . ID=CGI_10010053; scaffold1227 TRF Tandem_Repeat 168645 168722 156 + . . scaffold1227 GLEAN mRNA 210238 210393 0.982351 + . ID=CGI_10010056; scaffold1227 WUBlastX DNA_Kolobok-Hyd 210238 210393 21 + . . scaffold1227 GLEAN mRNA 210601 211017 0.982351 + . ID=CGI_10010056; scaffold1227 WUBlastX DNA_Kolobok-Hyd 210601 211017 50 + . . scaffold1227 GLEAN mRNA 210250 210369 0.982351 + . ID=CGI_10010056; scaffold1227 WUBlastX DNA_Kolobok-Hyd 210250 210369 40 + . . scaffold1227 GLEAN mRNA 209851 209913 0.982351 + . ID=CGI_10010056; scaffold1227 WUBlastX DNA_Kolobok-Hyd 209851 209913 33 + . . scaffold1227 GLEAN mRNA 210664 211233 0.982351 + . ID=CGI_10010056; scaffold1227 WUBlastX DNA_Kolobok-Hyd 210664 211233 65 + . . scaffold1227 GLEAN mRNA 210463 211035 0.982351 + . ID=CGI_10010056; scaffold1227 WUBlastX DNA_Kolobok-Hyd 210463 211035 43 + . . scaffold32 GLEAN mRNA 69265 69314 1 + . ID=CGI_10010062; scaffold32 TRF Tandem_Repeat 69265 69314 66 + . . scaffold32 GLEAN mRNA 69487 70730 1 + . ID=CGI_10010062; scaffold32 TRF Tandem_Repeat 69487 70730 1981 + . . scaffold32 GLEAN mRNA 77437 77471 0.998086 + . ID=CGI_10010063; scaffold32 TRF Tandem_Repeat 77437 77471 61 + . . scaffold32 GLEAN mRNA 79295 79334 0.998086 + . ID=CGI_10010063; scaffold32 TRF Tandem_Repeat 79295 79334 80 + . . scaffold32 GLEAN mRNA 119750 120070 0.999675 + . ID=CGI_10010065; scaffold32 TRF Tandem_Repeat 119750 120070 133 + . . scaffold32 GLEAN mRNA 120369 120504 0.999675 + . ID=CGI_10010065; scaffold32 TRF Tandem_Repeat 120369 120504 84 + . . scaffold32 GLEAN mRNA 124309 124607 1 - . ID=CGI_10010066; scaffold32 TRF Tandem_Repeat 124309 124607 251 + . . scaffold32 GLEAN mRNA 124304 124601 1 - . ID=CGI_10010066; scaffold32 TRF Tandem_Repeat 124304 124601 291 + . . scaffold32 GLEAN mRNA 142622 142846 0.992121 + . ID=CGI_10010068; scaffold32 WUBlastX DNA_TcMar-Marin 142622 142846 58 - . . scaffold32 GLEAN mRNA 152350 152397 0.992121 + . ID=CGI_10010068; scaffold32 TRF Tandem_Repeat 152350 152397 96 + . . scaffold32 GLEAN mRNA 162029 162063 1 - . ID=CGI_10010069; scaffold32 TRF Tandem_Repeat 162029 162063 52 + . . scaffold32 GLEAN mRNA 189140 189197 1 - . ID=CGI_10010072; scaffold32 TRF Tandem_Repeat 189140 189197 109 + . . scaffold32 GLEAN mRNA 192105 192146 1 - . ID=CGI_10010072; scaffold32 TRF Tandem_Repeat 192105 192146 84 + . . scaffold32 GLEAN mRNA 194174 194233 1 - . ID=CGI_10010072; scaffold32 TRF Tandem_Repeat 194174 194233 111 + . . scaffold1084 GLEAN mRNA 1368 1492 0.999999 + . ID=CGI_10010073; scaffold1084 TRF Tandem_Repeat 1368 1492 241 + . . scaffold1084 GLEAN mRNA 15004 15433 0.999999 + . ID=CGI_10010073; scaffold1084 TRF Tandem_Repeat 15004 15433 746 + . . scaffold1084 GLEAN mRNA 37418 37507 0.801676 + . ID=CGI_10010075; scaffold1084 WUBlastX LTR_ERV1 37418 37507 31 + . . scaffold1084 GLEAN mRNA 37334 37420 0.801676 + . ID=CGI_10010075; scaffold1084 WUBlastX LTR_ERV1 37334 37420 36 + . . scaffold1084 GLEAN mRNA 37262 37336 0.801676 + . ID=CGI_10010075; scaffold1084 WUBlastX LTR_ERV1 37262 37336 38 + . . scaffold1084 GLEAN mRNA 37677 37772 0.801676 + . ID=CGI_10010075; scaffold1084 WUBlastX LTR_Copia 37677 37772 25 + . . scaffold1084 GLEAN mRNA 109386 109416 0.999947 + . ID=CGI_10010077; scaffold1084 TRF Tandem_Repeat 109386 109416 62 + . . scaffold1084 GLEAN mRNA 148846 148905 0.702333 + . ID=CGI_10010078; scaffold1084 TRF Tandem_Repeat 148846 148905 75 + . . scaffold1084 GLEAN mRNA 151298 151348 0.702333 + . ID=CGI_10010078; scaffold1084 TRF Tandem_Repeat 151298 151348 102 + . . scaffold1084 GLEAN mRNA 152000 152066 0.702333 + . ID=CGI_10010078; scaffold1084 TRF Tandem_Repeat 152000 152066 89 + . . scaffold1084 GLEAN mRNA 155372 155470 0.702333 + . ID=CGI_10010078; scaffold1084 TRF Tandem_Repeat 155372 155470 60 + . . scaffold1084 GLEAN mRNA 158312 158338 0.702333 + . ID=CGI_10010078; scaffold1084 TRF Tandem_Repeat 158312 158338 54 + . . scaffold1084 GLEAN mRNA 148507 148818 0.702333 + . ID=CGI_10010078; scaffold1084 WUBlastX LTR_DIRS 148507 148818 186 + . . scaffold1084 GLEAN mRNA 147728 148471 0.702333 + . ID=CGI_10010078; scaffold1084 WUBlastX LTR_DIRS 147728 148471 174 + . . scaffold1084 GLEAN mRNA 153618 154571 0.702333 + . ID=CGI_10010078; scaffold1084 WUBlastX LTR_DIRS 153618 154571 538 + . . scaffold1084 GLEAN mRNA 152095 153762 0.702333 + . ID=CGI_10010078; scaffold1084 WUBlastX LTR_DIRS 152095 153762 1009 + . . scaffold1084 GLEAN mRNA 147404 148465 0.702333 + . ID=CGI_10010078; scaffold1084 WUBlastX LTR_DIRS 147404 148465 67 + . . scaffold1084 GLEAN mRNA 169612 169669 0.999572 + . ID=CGI_10010079; scaffold1084 TRF Tandem_Repeat 169612 169669 116 + . . scaffold1084 GLEAN mRNA 173927 174190 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 173927 174190 73 + . . scaffold1084 GLEAN mRNA 174759 174977 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 174759 174977 60 + . . scaffold1084 GLEAN mRNA 174829 176247 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 174829 176247 325 + . . scaffold1084 GLEAN mRNA 176231 176422 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 176231 176422 47 + . . scaffold1084 GLEAN mRNA 176613 176870 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 176613 176870 169 + . . scaffold1084 GLEAN mRNA 177403 177519 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 177403 177519 30 + . . scaffold1084 GLEAN mRNA 177528 177719 0.999572 + . ID=CGI_10010079; scaffold1084 WUBlastX LTR_DIRS 177528 177719 100 + . . scaffold1084 GLEAN mRNA 185143 185167 0.999572 + . ID=CGI_10010079; scaffold1084 TRF Tandem_Repeat 185143 185167 50 + . . scaffold1084 GLEAN mRNA 201069 201179 0.831202 + . ID=CGI_10010080; scaffold1084 TRF Tandem_Repeat 201069 201179 75 + . . scaffold1084 GLEAN mRNA 199935 200384 0.831202 + . ID=CGI_10010080; scaffold1084 WUBlastX LINE_RTE-X 199935 200384 47 + . . scaffold1751 GLEAN mRNA 15214 15248 0.705782 - . ID=CGI_10010082; scaffold1751 TRF Tandem_Repeat 15214 15248 70 + . . scaffold1751 GLEAN mRNA 15727 15996 0.705782 - . ID=CGI_10010082; scaffold1751 WUBlastX LINE_RTE-X 15727 15996 40 + . . scaffold1751 GLEAN mRNA 11501 11800 0.705782 - . ID=CGI_10010082; scaffold1751 WUBlastX DNA_hAT-Blackja 11501 11800 83 - . . scaffold1751 GLEAN mRNA 15712 16134 0.705782 - . ID=CGI_10010082; scaffold1751 WUBlastX LINE_RTE-X 15712 16134 24 + . . scaffold1751 GLEAN mRNA 15673 15969 0.705782 - . ID=CGI_10010082; scaffold1751 WUBlastX LINE_RTE-X 15673 15969 27 + . . scaffold1751 GLEAN mRNA 156250 156287 0.999675 + . ID=CGI_10010088; scaffold1751 TRF Tandem_Repeat 156250 156287 76 + . . scaffold1751 GLEAN mRNA 158896 158926 0.975374 - . ID=CGI_10010089; scaffold1751 TRF Tandem_Repeat 158896 158926 62 + . . scaffold1751 GLEAN mRNA 173331 173479 0.975374 - . ID=CGI_10010089; scaffold1751 TRF Tandem_Repeat 173331 173479 67 + . . scaffold1751 GLEAN mRNA 197231 197258 0.992999 - . ID=CGI_10010090; scaffold1751 TRF Tandem_Repeat 197231 197258 56 + . . scaffold1751 GLEAN mRNA 211518 211643 1 + . ID=CGI_10010091; scaffold1751 TRF Tandem_Repeat 211518 211643 166 + . . scaffold1751 GLEAN mRNA 245446 245490 0.496175 - . ID=CGI_10010093; scaffold1751 TRF Tandem_Repeat 245446 245490 90 + . . scaffold1751 GLEAN mRNA 249209 249248 0.496175 - . ID=CGI_10010093; scaffold1751 TRF Tandem_Repeat 249209 249248 71 + . . scaffold1452 GLEAN mRNA 193318 193371 0.327493 - . ID=CGI_10010097; scaffold1452 TRF Tandem_Repeat 193318 193371 74 + . . scaffold1452 GLEAN mRNA 200967 200991 0.327493 - . ID=CGI_10010097; scaffold1452 TRF Tandem_Repeat 200967 200991 50 + . . scaffold1459 GLEAN mRNA 11004 11480 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1-Tx1 11004 11480 114 + . . scaffold1459 GLEAN mRNA 15304 15768 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1-Tx1 15304 15768 193 + . . scaffold1459 GLEAN mRNA 10504 10599 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1-Tx1 10504 10599 31 + . . scaffold1459 GLEAN mRNA 10230 10505 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1 10230 10505 42 + . . scaffold1459 GLEAN mRNA 10541 10936 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1 10541 10936 90 + . . scaffold1459 GLEAN mRNA 16042 16113 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1 16042 16113 25 + . . scaffold1459 GLEAN mRNA 10652 10987 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1 10652 10987 60 + . . scaffold1459 GLEAN mRNA 10248 10445 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1-Tx1 10248 10445 63 + . . scaffold1459 GLEAN mRNA 15346 16080 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1-Tx1 15346 16080 114 + . . scaffold1459 GLEAN mRNA 15340 15711 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1-Tx1 15340 15711 225 + . . scaffold1459 GLEAN mRNA 15229 15711 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1-Tx1 15229 15711 119 + . . scaffold1459 GLEAN mRNA 17798 17914 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1 17798 17914 20 + . . scaffold1459 GLEAN mRNA 16544 16837 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1-Tx1 16544 16837 56 + . . scaffold1459 GLEAN mRNA 16104 16487 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1 16104 16487 66 + . . scaffold1459 GLEAN mRNA 16116 16427 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1 16116 16427 84 + . . scaffold1459 GLEAN mRNA 16161 16424 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1-Tx1 16161 16424 108 + . . scaffold1459 GLEAN mRNA 114643 114672 0.999674 - . ID=CGI_10010107; scaffold1459 TRF Tandem_Repeat 114643 114672 60 + . . scaffold1459 GLEAN mRNA 106127 109819 0.999674 - . ID=CGI_10010107; scaffold1459 WUBlastX LTR_Gypsy 106127 109819 1149 + . . scaffold1459 GLEAN mRNA 109760 109852 0.999674 - . ID=CGI_10010107; scaffold1459 WUBlastX LTR_Copia 109760 109852 29 + . . scaffold1459 GLEAN mRNA 110081 110236 0.999674 - . ID=CGI_10010107; scaffold1459 WUBlastX LTR_Gypsy 110081 110236 20 + . . scaffold1459 GLEAN mRNA 105470 105886 0.999674 - . ID=CGI_10010107; scaffold1459 WUBlastX LTR_Gypsy 105470 105886 44 + . . scaffold1459 GLEAN mRNA 105614 109222 0.999674 - . ID=CGI_10010107; scaffold1459 WUBlastX LTR_Gypsy 105614 109222 1229 + . . scaffold1459 GLEAN mRNA 205904 205929 0.471924 - . ID=CGI_10010114; scaffold1459 TRF Tandem_Repeat 205904 205929 52 + . . scaffold1459 GLEAN mRNA 214141 214221 0.471924 - . ID=CGI_10010114; scaffold1459 TRF Tandem_Repeat 214141 214221 65 + . . scaffold1459 GLEAN mRNA 214170 214207 0.471924 - . ID=CGI_10010114; scaffold1459 TRF Tandem_Repeat 214170 214207 67 + . . scaffold1459 GLEAN mRNA 214255 214554 0.471924 - . ID=CGI_10010114; scaffold1459 WUBlastX LINE_L1-Tx1 214255 214554 43 - . . scaffold43388 GLEAN mRNA 33674 33819 0.990125 - . ID=CGI_10010116; scaffold43388 TRF Tandem_Repeat 33674 33819 69 + . . scaffold43388 GLEAN mRNA 35731 35794 0.990125 - . ID=CGI_10010116; scaffold43388 TRF Tandem_Repeat 35731 35794 128 + . . scaffold43388 GLEAN mRNA 63094 63147 0.544826 - . ID=CGI_10010117; scaffold43388 TRF Tandem_Repeat 63094 63147 108 + . . scaffold43388 GLEAN mRNA 211909 211946 0.363541 - . ID=CGI_10010121; scaffold43388 TRF Tandem_Repeat 211909 211946 67 + . . scaffold43388 GLEAN mRNA 212272 212344 0.363541 - . ID=CGI_10010121; scaffold43388 TRF Tandem_Repeat 212272 212344 146 + . . scaffold43388 GLEAN mRNA 217320 218186 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX DNA_IS4EU 217320 218186 100 + . . scaffold43388 GLEAN mRNA 217416 218144 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX DNA_Kolobok-IS4 217416 218144 131 + . . scaffold43388 GLEAN mRNA 226436 227023 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX DNA_IS4EU 226436 227023 72 - . . scaffold43388 GLEAN mRNA 223676 224806 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX LINE_CR1 223676 224806 904 + . . scaffold43388 GLEAN mRNA 222970 223680 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX LINE_CR1 222970 223680 541 + . . scaffold43388 GLEAN mRNA 226002 226118 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX DNA_IS4EU 226002 226118 71 - . . scaffold43388 GLEAN mRNA 226517 226942 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX DNA_IS4EU 226517 226942 175 - . . scaffold43388 GLEAN mRNA 225812 225952 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX DNA_IS4EU 225812 225952 42 - . . scaffold43388 GLEAN mRNA 218291 219073 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX DNA_IS4EU 218291 219073 414 - . . scaffold43388 GLEAN mRNA 214456 214974 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX DNA_IS4EU 214456 214974 58 + . . scaffold43388 GLEAN mRNA 225842 225991 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX DNA_IS4EU 225842 225991 70 - . . scaffold43388 GLEAN mRNA 219717 219797 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX DNA_IS4EU 219717 219797 27 - . . scaffold43388 GLEAN mRNA 214660 214974 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX DNA_IS4EU 214660 214974 98 + . . scaffold43388 GLEAN mRNA 221544 222995 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX LINE_CR1 221544 222995 558 + . . scaffold43388 GLEAN mRNA 232750 233007 0.363541 - . ID=CGI_10010121; scaffold43388 TRF Tandem_Repeat 232750 233007 435 + . . scaffold43388 GLEAN mRNA 230904 232643 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX LINE_RTE-X 230904 232643 371 + . . scaffold43388 GLEAN mRNA 230661 231284 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX LINE_L2 230661 231284 115 + . . scaffold43388 GLEAN mRNA 229844 229906 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX LINE_L1-Tx1 229844 229906 20 + . . scaffold43388 GLEAN mRNA 230814 231272 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX LINE_RTE-X 230814 231272 271 + . . scaffold43388 GLEAN mRNA 230520 231257 0.363541 - . ID=CGI_10010121; scaffold43388 WUBlastX LINE_CR1 230520 231257 24 + . . scaffold782 GLEAN mRNA 17359 17400 0.996237 + . ID=CGI_10010123; scaffold782 TRF Tandem_Repeat 17359 17400 66 + . . scaffold782 GLEAN mRNA 72538 72562 0.938415 - . ID=CGI_10010127; scaffold782 TRF Tandem_Repeat 72538 72562 50 + . . scaffold782 GLEAN mRNA 72719 72743 0.938415 - . ID=CGI_10010127; scaffold782 TRF Tandem_Repeat 72719 72743 50 + . . scaffold782 GLEAN mRNA 95294 95370 1 + . ID=CGI_10010130; scaffold782 TRF Tandem_Repeat 95294 95370 138 + . . scaffold782 GLEAN mRNA 110767 110852 1 - . ID=CGI_10010131; scaffold782 TRF Tandem_Repeat 110767 110852 127 + . . scaffold782 GLEAN mRNA 115863 116482 0.794481 - . ID=CGI_10010132; scaffold782 TRF Tandem_Repeat 115863 116482 551 + . . scaffold782 GLEAN mRNA 115863 116482 0.794481 - . ID=CGI_10010132; scaffold782 TRF Tandem_Repeat 115863 116482 649 + . . scaffold782 GLEAN mRNA 115863 116482 0.794481 - . ID=CGI_10010132; scaffold782 TRF Tandem_Repeat 115863 116482 651 + . . scaffold782 GLEAN mRNA 138302 138518 0.883705 + . ID=CGI_10010134; scaffold782 TRF Tandem_Repeat 138302 138518 186 + . . scaffold782 GLEAN mRNA 138302 138518 0.883705 + . ID=CGI_10010134; scaffold782 TRF Tandem_Repeat 138302 138518 101 + . . scaffold782 GLEAN mRNA 138305 138410 0.883705 + . ID=CGI_10010134; scaffold782 TRF Tandem_Repeat 138305 138410 79 + . . scaffold782 GLEAN mRNA 157992 158740 0.794739 - . ID=CGI_10010135; scaffold782 TRF Tandem_Repeat 157992 158740 973 + . . scaffold782 GLEAN mRNA 169417 169525 0.99874 + . ID=CGI_10010137; scaffold782 TRF Tandem_Repeat 169417 169525 92 + . . scaffold782 GLEAN mRNA 169417 169518 0.99874 + . ID=CGI_10010137; scaffold782 TRF Tandem_Repeat 169417 169518 105 + . . scaffold782 GLEAN mRNA 170219 170284 0.99874 + . ID=CGI_10010137; scaffold782 TRF Tandem_Repeat 170219 170284 132 + . . scaffold782 GLEAN mRNA 180396 180448 1 - . ID=CGI_10010138; scaffold782 TRF Tandem_Repeat 180396 180448 72 + . . scaffold782 GLEAN mRNA 193177 193384 0.610974 - . ID=CGI_10010139; scaffold782 TRF Tandem_Repeat 193177 193384 389 + . . scaffold782 GLEAN mRNA 193253 193481 0.610974 - . ID=CGI_10010139; scaffold782 TRF Tandem_Repeat 193253 193481 161 + . . scaffold782 GLEAN mRNA 201280 201357 0.610974 - . ID=CGI_10010139; scaffold782 TRF Tandem_Repeat 201280 201357 57 + . . scaffold782 GLEAN mRNA 201594 201661 0.610974 - . ID=CGI_10010139; scaffold782 TRF Tandem_Repeat 201594 201661 55 + . . scaffold782 GLEAN mRNA 201125 201697 0.610974 - . ID=CGI_10010139; scaffold782 TRF Tandem_Repeat 201125 201697 378 + . . scaffold782 GLEAN mRNA 202550 202893 0.610974 - . ID=CGI_10010139; scaffold782 TRF Tandem_Repeat 202550 202893 670 + . . scaffold782 GLEAN mRNA 222202 222450 0.19365 + . ID=CGI_10010140; scaffold782 TRF Tandem_Repeat 222202 222450 272 + . . scaffold782 GLEAN mRNA 243332 243414 0.19365 + . ID=CGI_10010140; scaffold782 TRF Tandem_Repeat 243332 243414 86 + . . scaffold782 GLEAN mRNA 243332 243414 0.19365 + . ID=CGI_10010140; scaffold782 TRF Tandem_Repeat 243332 243414 91 + . . scaffold782 GLEAN mRNA 243332 243414 0.19365 + . ID=CGI_10010140; scaffold782 TRF Tandem_Repeat 243332 243414 83 + . . scaffold43396 GLEAN mRNA 14707 15104 0.518883 + . ID=CGI_10010143; scaffold43396 TRF Tandem_Repeat 14679 15104 388 + . . scaffold43396 GLEAN mRNA 38422 39045 0.607491 - . ID=CGI_10010144; scaffold43396 TRF Tandem_Repeat 38422 39045 776 + . . scaffold43396 GLEAN mRNA 44570 44612 0.607491 - . ID=CGI_10010144; scaffold43396 TRF Tandem_Repeat 44570 44612 86 + . . scaffold43396 GLEAN mRNA 50648 50701 0.607491 - . ID=CGI_10010144; scaffold43396 TRF Tandem_Repeat 50648 50701 108 + . . scaffold43396 GLEAN mRNA 58431 58537 0.607491 - . ID=CGI_10010144; scaffold43396 TRF Tandem_Repeat 58431 58537 119 + . . scaffold43396 GLEAN mRNA 58575 58600 0.607491 - . ID=CGI_10010144; scaffold43396 TRF Tandem_Repeat 58575 58600 52 + . . scaffold43396 GLEAN mRNA 59646 59744 0.607491 - . ID=CGI_10010144; scaffold43396 TRF Tandem_Repeat 59646 59744 153 + . . scaffold43396 GLEAN mRNA 65070 65103 0.988168 - . ID=CGI_10010145; scaffold43396 TRF Tandem_Repeat 65070 65103 68 + . . scaffold43396 GLEAN mRNA 164404 164467 0.957032 - . ID=CGI_10010149; scaffold43396 TRF Tandem_Repeat 164404 164467 71 + . . scaffold43396 GLEAN mRNA 176432 176458 0.999996 + . ID=CGI_10010150; scaffold43396 TRF Tandem_Repeat 176432 176458 54 + . . scaffold43396 GLEAN mRNA 184102 184155 0.999996 + . ID=CGI_10010150; scaffold43396 TRF Tandem_Repeat 184102 184155 108 + . . scaffold43396 GLEAN mRNA 188412 188545 0.999996 + . ID=CGI_10010150; scaffold43396 TRF Tandem_Repeat 188412 188545 71 + . . scaffold43396 GLEAN mRNA 194489 194599 0.999996 + . ID=CGI_10010150; scaffold43396 TRF Tandem_Repeat 194489 194599 82 + . . scaffold43396 GLEAN mRNA 195437 195658 0.999996 + . ID=CGI_10010150; scaffold43396 TRF Tandem_Repeat 195437 195658 123 + . . scaffold43396 GLEAN mRNA 195437 195629 0.999996 + . ID=CGI_10010150; scaffold43396 TRF Tandem_Repeat 195437 195629 110 + . . scaffold43396 GLEAN mRNA 195804 195924 0.999996 + . ID=CGI_10010150; scaffold43396 TRF Tandem_Repeat 195804 195924 90 + . . scaffold43396 GLEAN mRNA 195691 195924 0.999996 + . ID=CGI_10010150; scaffold43396 TRF Tandem_Repeat 195691 195924 106 + . . scaffold43396 GLEAN mRNA 195768 195924 0.999996 + . ID=CGI_10010150; scaffold43396 TRF Tandem_Repeat 195768 195924 125 + . . scaffold43396 GLEAN mRNA 195757 195936 0.999996 + . ID=CGI_10010150; scaffold43396 TRF Tandem_Repeat 195757 195936 129 + . . scaffold43396 GLEAN mRNA 186430 186702 0.999996 + . ID=CGI_10010150; scaffold43396 WUBlastX LINE_Penelope 186430 186702 102 + . . scaffold43396 GLEAN mRNA 186734 186937 0.999996 + . ID=CGI_10010150; scaffold43396 WUBlastX LINE_Penelope 186734 186937 22 + . . scaffold43396 GLEAN mRNA 186734 186841 0.999996 + . ID=CGI_10010150; scaffold43396 WUBlastX LINE_Penelope 186734 186841 44 + . . scaffold43396 GLEAN mRNA 186391 186744 0.999996 + . ID=CGI_10010150; scaffold43396 WUBlastX LINE_Penelope 186391 186744 75 + . . scaffold43396 GLEAN mRNA 189214 189837 0.999996 + . ID=CGI_10010150; scaffold43396 WUBlastX DNA_Harbinger 189214 189837 25 + . . scaffold43396 GLEAN mRNA 189268 189459 0.999996 + . ID=CGI_10010150; scaffold43396 WUBlastX DNA_Harbinger 189268 189459 61 + . . scaffold43396 GLEAN mRNA 220452 220510 0.999995 - . ID=CGI_10010154; scaffold43396 TRF Tandem_Repeat 220452 220510 82 + . . scaffold43396 GLEAN mRNA 233652 233910 0.993815 + . ID=CGI_10010156; scaffold43396 TRF Tandem_Repeat 233652 233910 342 + . . scaffold43396 GLEAN mRNA 238566 238794 0.993815 + . ID=CGI_10010156; scaffold43396 TRF Tandem_Repeat 238566 238794 178 + . . scaffold43396 GLEAN mRNA 236876 237421 0.993815 + . ID=CGI_10010156; scaffold43396 WUBlastX LTR_Ngaro 236876 237421 334 - . . scaffold43396 GLEAN mRNA 235412 235585 0.993815 + . ID=CGI_10010156; scaffold43396 WUBlastX LTR_Ngaro 235412 235585 24 - . . scaffold43396 GLEAN mRNA 235006 235404 0.993815 + . ID=CGI_10010156; scaffold43396 WUBlastX LTR_Ngaro 235006 235404 60 - . . scaffold43396 GLEAN mRNA 235909 236871 0.993815 + . ID=CGI_10010156; scaffold43396 WUBlastX LTR_Ngaro 235909 236871 394 - . . scaffold43396 GLEAN mRNA 235445 235765 0.993815 + . ID=CGI_10010156; scaffold43396 WUBlastX LTR_Ngaro 235445 235765 100 - . . scaffold43396 GLEAN mRNA 235006 235293 0.993815 + . ID=CGI_10010156; scaffold43396 WUBlastX LTR_Ngaro 235006 235293 137 - . . scaffold43396 GLEAN mRNA 237754 237834 0.993815 + . ID=CGI_10010156; scaffold43396 WUBlastX LTR_Ngaro 237754 237834 56 - . . scaffold1704 GLEAN mRNA 14857 14893 0.998148 + . ID=CGI_10010159; scaffold1704 TRF Tandem_Repeat 14857 14893 51 + . . scaffold1704 GLEAN mRNA 23237 25032 0.998148 + . ID=CGI_10010159; scaffold1704 TRF Tandem_Repeat 23237 25032 1477 + . . scaffold1704 GLEAN mRNA 19022 19255 0.998148 + . ID=CGI_10010159; scaffold1704 WUBlastX DNA_PiggyBac 19022 19255 38 - . . scaffold1704 GLEAN mRNA 26672 26989 0.998148 + . ID=CGI_10010159; scaffold1704 WUBlastX LTR_Gypsy 26672 26989 61 + . . scaffold1704 GLEAN mRNA 26621 27079 0.998148 + . ID=CGI_10010159; scaffold1704 WUBlastX LTR_Gypsy 26621 27079 52 + . . scaffold1704 GLEAN mRNA 19022 19255 0.999984 - . ID=CGI_10010160; scaffold1704 WUBlastX DNA_PiggyBac 19022 19255 38 - . . scaffold1704 GLEAN mRNA 36210 37103 0.675217 - . ID=CGI_10010162; scaffold1704 WUBlastX LINE_RTE-X 36210 37103 146 + . . scaffold1704 GLEAN mRNA 39455 40327 0.675217 - . ID=CGI_10010162; scaffold1704 WUBlastX LINE_RTE-X 39455 40327 235 - . . scaffold1704 GLEAN mRNA 40733 40843 0.675217 - . ID=CGI_10010162; scaffold1704 WUBlastX LINE_RTE-X 40733 40843 34 - . . scaffold1704 GLEAN mRNA 67009 67542 0.999998 + . ID=CGI_10010165; scaffold1704 TRF Tandem_Repeat 67009 67542 203 + . . scaffold1704 GLEAN mRNA 67052 67542 0.999998 + . ID=CGI_10010165; scaffold1704 TRF Tandem_Repeat 67052 67542 387 + . . scaffold1704 GLEAN mRNA 67052 67542 0.999998 + . ID=CGI_10010165; scaffold1704 TRF Tandem_Repeat 67052 67542 423 + . . scaffold1704 GLEAN mRNA 67009 67542 0.99909 - . ID=CGI_10010166; scaffold1704 TRF Tandem_Repeat 67009 67542 203 + . . scaffold1704 GLEAN mRNA 67052 67542 0.99909 - . ID=CGI_10010166; scaffold1704 TRF Tandem_Repeat 67052 67542 387 + . . scaffold1704 GLEAN mRNA 67052 67542 0.99909 - . ID=CGI_10010166; scaffold1704 TRF Tandem_Repeat 67052 67542 423 + . . scaffold1704 GLEAN mRNA 80132 80300 0.998817 - . ID=CGI_10010167; scaffold1704 TRF Tandem_Repeat 80132 80300 218 + . . scaffold1704 GLEAN mRNA 80511 80606 0.998817 - . ID=CGI_10010167; scaffold1704 TRF Tandem_Repeat 80511 80606 51 + . . scaffold1704 GLEAN mRNA 81369 81546 0.998817 - . ID=CGI_10010167; scaffold1704 TRF Tandem_Repeat 81369 81546 109 + . . scaffold1704 GLEAN mRNA 82067 82289 0.998817 - . ID=CGI_10010167; scaffold1704 TRF Tandem_Repeat 82067 82289 149 + . . scaffold1704 GLEAN mRNA 92130 92242 0.998817 - . ID=CGI_10010167; scaffold1704 TRF Tandem_Repeat 92130 92242 190 + . . scaffold1704 GLEAN mRNA 94944 95006 0.998817 - . ID=CGI_10010167; scaffold1704 TRF Tandem_Repeat 94944 95006 108 + . . scaffold1704 GLEAN mRNA 81231 82269 0.998817 - . ID=CGI_10010167; scaffold1704 TRF Tandem_Repeat 81231 82269 852 + . . scaffold1704 GLEAN mRNA 81677 82269 0.998817 - . ID=CGI_10010167; scaffold1704 TRF Tandem_Repeat 81677 82269 656 + . . scaffold1704 GLEAN mRNA 134757 134797 0.994715 + . ID=CGI_10010170; scaffold1704 TRF Tandem_Repeat 134757 134797 82 + . . scaffold1704 GLEAN mRNA 136510 136548 0.994715 + . ID=CGI_10010170; scaffold1704 TRF Tandem_Repeat 136510 136548 51 + . . scaffold1704 GLEAN mRNA 139841 140076 0.994715 + . ID=CGI_10010170; scaffold1704 TRF Tandem_Repeat 139841 140076 400 + . . scaffold1704 GLEAN mRNA 141215 141340 0.994715 + . ID=CGI_10010170; scaffold1704 TRF Tandem_Repeat 141215 141340 110 + . . scaffold1704 GLEAN mRNA 145045 145592 0.994715 + . ID=CGI_10010170; scaffold1704 TRF Tandem_Repeat 145045 145592 581 + . . scaffold1704 GLEAN mRNA 147149 147413 0.994715 + . ID=CGI_10010170; scaffold1704 TRF Tandem_Repeat 147149 147413 268 + . . scaffold1704 GLEAN mRNA 133095 133709 0.994715 + . ID=CGI_10010170; scaffold1704 WUBlastX DNA_Crypton 133095 133709 117 + . . scaffold1704 GLEAN mRNA 133428 133763 0.994715 + . ID=CGI_10010170; scaffold1704 WUBlastX DNA_Crypton 133428 133763 89 + . . scaffold1704 GLEAN mRNA 149781 150182 0.994715 + . ID=CGI_10010170; scaffold1704 WUBlastX LINE_RTE-X 149781 150182 158 + . . scaffold1704 GLEAN mRNA 148939 149178 0.994715 + . ID=CGI_10010170; scaffold1704 WUBlastX LINE_RTE-X 148939 149178 29 + . . scaffold1704 GLEAN mRNA 149017 149574 0.994715 + . ID=CGI_10010170; scaffold1704 WUBlastX LINE_RTE-X 149017 149574 37 + . . scaffold1704 GLEAN mRNA 149673 150116 0.994715 + . ID=CGI_10010170; scaffold1704 WUBlastX LINE_RTE-X 149673 150116 94 + . . scaffold1704 GLEAN mRNA 207174 207209 1 - . ID=CGI_10010173; scaffold1704 TRF Tandem_Repeat 207174 207209 56 + . . scaffold1704 GLEAN mRNA 210756 211148 1 - . ID=CGI_10010173; scaffold1704 TRF Tandem_Repeat 210756 211148 488 + . . scaffold1704 GLEAN mRNA 238614 238657 0.863496 + . ID=CGI_10010174; scaffold1704 TRF Tandem_Repeat 238614 238657 88 + . . scaffold1704 GLEAN mRNA 241164 241462 0.863496 + . ID=CGI_10010174; scaffold1704 TRF Tandem_Repeat 241164 241462 482 + . . scaffold1704 GLEAN mRNA 244102 244240 0.863496 + . ID=CGI_10010174; scaffold1704 TRF Tandem_Repeat 244102 244240 208 + . . scaffold1056 GLEAN mRNA 36627 36672 0.999457 - . ID=CGI_10010175; scaffold1056 TRF Tandem_Repeat 36627 36672 92 + . . scaffold1056 GLEAN mRNA 101554 101609 0.999922 + . ID=CGI_10010180; scaffold1056 TRF Tandem_Repeat 101554 101609 112 + . . scaffold930 GLEAN mRNA 27251 27277 1 - . ID=CGI_10010185; scaffold930 TRF Tandem_Repeat 27251 27277 54 + . . scaffold930 GLEAN mRNA 58511 58692 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 58511 58692 105 + . . scaffold930 GLEAN mRNA 58502 58689 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 58502 58689 135 + . . scaffold930 GLEAN mRNA 59821 59854 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 59821 59854 68 + . . scaffold930 GLEAN mRNA 63139 63182 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 63139 63182 88 + . . scaffold930 GLEAN mRNA 63182 63234 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 63182 63234 106 + . . scaffold930 GLEAN mRNA 68439 68479 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 68439 68479 64 + . . scaffold930 GLEAN mRNA 72186 72286 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 72186 72286 177 + . . scaffold930 GLEAN mRNA 72445 72472 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 72445 72472 56 + . . scaffold930 GLEAN mRNA 75908 75972 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 75908 75972 85 + . . scaffold930 GLEAN mRNA 75908 75972 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 75908 75972 94 + . . scaffold930 GLEAN mRNA 75908 75959 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 75908 75959 68 + . . scaffold930 GLEAN mRNA 75917 75972 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 75917 75972 67 + . . scaffold930 GLEAN mRNA 90347 90384 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 90347 90384 76 + . . scaffold930 GLEAN mRNA 124583 124649 0.412577 - . ID=CGI_10010191; scaffold930 TRF Tandem_Repeat 124583 124649 89 + . . scaffold930 GLEAN mRNA 127041 127095 0.412577 - . ID=CGI_10010191; scaffold930 TRF Tandem_Repeat 127041 127095 110 + . . scaffold930 GLEAN mRNA 156666 156728 0.999676 + . ID=CGI_10010193; scaffold930 TRF Tandem_Repeat 156666 156728 126 + . . scaffold930 GLEAN mRNA 157058 157117 0.999676 + . ID=CGI_10010193; scaffold930 TRF Tandem_Repeat 157058 157117 111 + . . scaffold930 GLEAN mRNA 161659 161686 0.999676 + . ID=CGI_10010193; scaffold930 TRF Tandem_Repeat 161659 161686 56 + . . scaffold930 GLEAN mRNA 169578 169609 0.982321 - . ID=CGI_10010194; scaffold930 TRF Tandem_Repeat 169578 169609 64 + . . scaffold930 GLEAN mRNA 173292 173341 0.982321 - . ID=CGI_10010194; scaffold930 TRF Tandem_Repeat 173292 173341 100 + . . scaffold930 GLEAN mRNA 169578 169609 1 + . ID=CGI_10010195; scaffold930 TRF Tandem_Repeat 169578 169609 64 + . . scaffold930 GLEAN mRNA 192930 192979 0.999843 - . ID=CGI_10010196; scaffold930 TRF Tandem_Repeat 192930 192979 100 + . . scaffold930 GLEAN mRNA 237634 237736 0.84036 - . ID=CGI_10010203; scaffold930 TRF Tandem_Repeat 237634 237736 118 + . . scaffold930 GLEAN mRNA 237645 237804 0.84036 - . ID=CGI_10010203; scaffold930 TRF Tandem_Repeat 237645 237804 158 + . . scaffold930 GLEAN mRNA 237803 237927 0.84036 - . ID=CGI_10010203; scaffold930 TRF Tandem_Repeat 237803 237927 106 + . . scaffold930 GLEAN mRNA 239848 240240 0.84036 - . ID=CGI_10010203; scaffold930 WUBlastX DNA_Merlin 239848 240240 26 + . . scaffold930 GLEAN mRNA 241083 241574 0.84036 - . ID=CGI_10010203; scaffold930 WUBlastX DNA_Merlin 241083 241574 292 + . . scaffold930 GLEAN mRNA 240001 240234 0.84036 - . ID=CGI_10010203; scaffold930 WUBlastX DNA_Merlin 240001 240234 40 + . . scaffold43406 GLEAN mRNA 23375 23462 0.99909 + . ID=CGI_10010206; scaffold43406 TRF Tandem_Repeat 23375 23462 108 + . . scaffold43406 GLEAN mRNA 24854 25418 0.99909 + . ID=CGI_10010206; scaffold43406 TRF Tandem_Repeat 24854 25418 826 + . . scaffold43406 GLEAN mRNA 37226 37274 0.941684 + . ID=CGI_10010208; scaffold43406 TRF Tandem_Repeat 37226 37274 71 + . . scaffold43406 GLEAN mRNA 82157 82549 0.998098 + . ID=CGI_10010210; scaffold43406 WUBlastX LINE_RTE-BovB 82157 82549 243 - . . scaffold43406 GLEAN mRNA 82202 82612 0.998098 + . ID=CGI_10010210; scaffold43406 WUBlastX LINE_RTE-BovB 82202 82612 68 - . . scaffold43406 GLEAN mRNA 150005 150106 0.986655 + . ID=CGI_10010212; scaffold43406 WUBlastX LTR_Gypsy 150005 150106 25 + . . scaffold43406 GLEAN mRNA 165620 165654 0.986179 + . ID=CGI_10010214; scaffold43406 TRF Tandem_Repeat 165620 165654 52 + . . scaffold43406 GLEAN mRNA 174902 174926 0.986179 + . ID=CGI_10010214; scaffold43406 TRF Tandem_Repeat 174902 174926 50 + . . scaffold43406 GLEAN mRNA 189507 189545 0.983877 + . ID=CGI_10010215; scaffold43406 TRF Tandem_Repeat 189507 189545 60 + . . scaffold43406 GLEAN mRNA 192432 192459 0.983877 + . ID=CGI_10010215; scaffold43406 TRF Tandem_Repeat 192432 192459 56 + . . scaffold1619 GLEAN mRNA 32372 32401 0.966401 - . ID=CGI_10010216; scaffold1619 TRF Tandem_Repeat 32372 32401 60 + . . scaffold1619 GLEAN mRNA 80019 80252 0.630755 + . ID=CGI_10010218; scaffold1619 TRF Tandem_Repeat 80019 80252 276 + . . scaffold1619 GLEAN mRNA 86305 86562 0.630755 + . ID=CGI_10010218; scaffold1619 TRF Tandem_Repeat 86305 86562 399 + . . scaffold1619 GLEAN mRNA 87605 87802 0.630755 + . ID=CGI_10010218; scaffold1619 TRF Tandem_Repeat 87605 87802 169 + . . scaffold1619 GLEAN mRNA 88644 88731 0.630755 + . ID=CGI_10010218; scaffold1619 TRF Tandem_Repeat 88644 88731 108 + . . scaffold1619 GLEAN mRNA 88925 88958 0.630755 + . ID=CGI_10010218; scaffold1619 TRF Tandem_Repeat 88925 88958 50 + . . scaffold1619 GLEAN mRNA 95347 95915 0.630755 + . ID=CGI_10010218; scaffold1619 TRF Tandem_Repeat 95347 95915 958 + . . scaffold1619 GLEAN mRNA 96513 96851 0.630755 + . ID=CGI_10010218; scaffold1619 TRF Tandem_Repeat 96513 96851 538 + . . scaffold1619 GLEAN mRNA 241651 241688 0.998486 + . ID=CGI_10010223; scaffold1619 TRF Tandem_Repeat 241651 241688 67 + . . scaffold1619 GLEAN mRNA 240731 240799 0.998486 + . ID=CGI_10010223; scaffold1619 WUBlastX DNA_Kolobok-Hyd 240731 240799 27 + . . scaffold43442 GLEAN mRNA 14072 14158 0.733264 + . ID=CGI_10010225; scaffold43442 TRF Tandem_Repeat 14072 14158 138 + . . scaffold43442 GLEAN mRNA 15173 15565 0.733264 + . ID=CGI_10010225; scaffold43442 TRF Tandem_Repeat 15173 15565 437 + . . scaffold43442 GLEAN mRNA 15134 15577 0.733264 + . ID=CGI_10010225; scaffold43442 TRF Tandem_Repeat 15134 15577 827 + . . scaffold43442 GLEAN mRNA 96071 96152 0.998384 - . ID=CGI_10010232; scaffold43442 TRF Tandem_Repeat 96071 96152 82 + . . scaffold43442 GLEAN mRNA 97066 97096 0.998384 - . ID=CGI_10010232; scaffold43442 TRF Tandem_Repeat 97066 97096 62 + . . scaffold43442 GLEAN mRNA 98043 98105 0.998384 - . ID=CGI_10010232; scaffold43442 TRF Tandem_Repeat 98043 98105 126 + . . scaffold43442 GLEAN mRNA 96071 96152 0.999473 + . ID=CGI_10010233; scaffold43442 TRF Tandem_Repeat 96071 96152 82 + . . scaffold43442 GLEAN mRNA 97066 97096 0.999473 + . ID=CGI_10010233; scaffold43442 TRF Tandem_Repeat 97066 97096 62 + . . scaffold43442 GLEAN mRNA 98043 98105 0.999473 + . ID=CGI_10010233; scaffold43442 TRF Tandem_Repeat 98043 98105 126 + . . scaffold43442 GLEAN mRNA 102490 102552 0.996671 + . ID=CGI_10010234; scaffold43442 TRF Tandem_Repeat 102490 102552 117 + . . scaffold43442 GLEAN mRNA 104142 104196 0.996671 + . ID=CGI_10010234; scaffold43442 TRF Tandem_Repeat 104142 104196 110 + . . scaffold43442 GLEAN mRNA 107403 107435 0.996671 + . ID=CGI_10010234; scaffold43442 TRF Tandem_Repeat 107403 107435 50 + . . scaffold43442 GLEAN mRNA 125939 125981 0.767652 + . ID=CGI_10010235; scaffold43442 TRF Tandem_Repeat 125939 125981 86 + . . scaffold43442 GLEAN mRNA 142764 142789 1 + . ID=CGI_10010236; scaffold43442 TRF Tandem_Repeat 142764 142789 52 + . . scaffold43442 GLEAN mRNA 182680 182706 0.999346 - . ID=CGI_10010238; scaffold43442 TRF Tandem_Repeat 182680 182706 54 + . . scaffold43442 GLEAN mRNA 188797 189304 0.999346 - . ID=CGI_10010238; scaffold43442 TRF Tandem_Repeat 188797 189304 583 + . . scaffold1601 GLEAN mRNA 60277 60329 0.999949 - . ID=CGI_10010242; scaffold1601 TRF Tandem_Repeat 60277 60329 106 + . . scaffold1601 GLEAN mRNA 70440 71614 0.843264 - . ID=CGI_10010243; scaffold1601 TRF Tandem_Repeat 70440 71614 548 + . . scaffold1601 GLEAN mRNA 70407 70650 0.843264 - . ID=CGI_10010243; scaffold1601 TRF Tandem_Repeat 70407 70650 210 + . . scaffold1601 GLEAN mRNA 70702 71591 0.843264 - . ID=CGI_10010243; scaffold1601 TRF Tandem_Repeat 70702 71591 1456 + . . scaffold1601 GLEAN mRNA 72912 73226 0.843264 - . ID=CGI_10010243; scaffold1601 TRF Tandem_Repeat 72912 73226 114 + . . scaffold1601 GLEAN mRNA 73052 73226 0.843264 - . ID=CGI_10010243; scaffold1601 TRF Tandem_Repeat 73052 73226 206 + . . scaffold1601 GLEAN mRNA 75522 75937 0.843264 - . ID=CGI_10010243; scaffold1601 TRF Tandem_Repeat 75522 75937 566 + . . scaffold1601 GLEAN mRNA 81422 81521 0.992457 + . ID=CGI_10010244; scaffold1601 TRF Tandem_Repeat 81422 81521 67 + . . scaffold1601 GLEAN mRNA 91032 91178 0.992457 + . ID=CGI_10010244; scaffold1601 TRF Tandem_Repeat 91032 91178 222 + . . scaffold1601 GLEAN mRNA 97343 97463 0.687575 - . ID=CGI_10010245; scaffold1601 TRF Tandem_Repeat 97343 97463 104 + . . scaffold1601 GLEAN mRNA 98682 99094 0.687575 - . ID=CGI_10010245; scaffold1601 TRF Tandem_Repeat 98682 99094 520 + . . scaffold1601 GLEAN mRNA 98686 99094 0.687575 - . ID=CGI_10010245; scaffold1601 TRF Tandem_Repeat 98686 99094 575 + . . scaffold1601 GLEAN mRNA 100839 100876 0.687575 - . ID=CGI_10010245; scaffold1601 TRF Tandem_Repeat 100839 100876 51 + . . scaffold1601 GLEAN mRNA 102492 102539 0.687575 - . ID=CGI_10010245; scaffold1601 TRF Tandem_Repeat 102492 102539 96 + . . scaffold1601 GLEAN mRNA 104010 104182 0.687575 - . ID=CGI_10010245; scaffold1601 TRF Tandem_Repeat 104010 104182 238 + . . scaffold1601 GLEAN mRNA 104194 104357 0.687575 - . ID=CGI_10010245; scaffold1601 TRF Tandem_Repeat 104194 104357 247 + . . scaffold1601 GLEAN mRNA 104371 104921 0.687575 - . ID=CGI_10010245; scaffold1601 TRF Tandem_Repeat 104371 104921 652 + . . scaffold1601 GLEAN mRNA 109850 110653 0.619861 - . ID=CGI_10010246; scaffold1601 TRF Tandem_Repeat 109850 110653 606 + . . scaffold1601 GLEAN mRNA 111862 111886 0.619861 - . ID=CGI_10010246; scaffold1601 TRF Tandem_Repeat 111862 111886 50 + . . scaffold1601 GLEAN mRNA 113101 113132 0.619861 - . ID=CGI_10010246; scaffold1601 TRF Tandem_Repeat 113101 113132 64 + . . scaffold1601 GLEAN mRNA 114020 114191 0.619861 - . ID=CGI_10010246; scaffold1601 TRF Tandem_Repeat 114020 114191 116 + . . scaffold1601 GLEAN mRNA 120665 120703 0.619861 - . ID=CGI_10010246; scaffold1601 TRF Tandem_Repeat 120665 120703 69 + . . scaffold1601 GLEAN mRNA 122048 122246 0.999999 - . ID=CGI_10010247; scaffold1601 TRF Tandem_Repeat 122048 122246 326 + . . scaffold1601 GLEAN mRNA 123421 123468 0.999999 - . ID=CGI_10010247; scaffold1601 TRF Tandem_Repeat 123421 123468 96 + . . scaffold1601 GLEAN mRNA 145680 145712 0.999675 + . ID=CGI_10010251; scaffold1601 TRF Tandem_Repeat 145680 145712 66 + . . scaffold1601 GLEAN mRNA 157139 158162 0.395542 + . ID=CGI_10010252; scaffold1601 TRF Tandem_Repeat 157139 158162 1230 + . . scaffold1601 GLEAN mRNA 157162 158162 0.395542 + . ID=CGI_10010252; scaffold1601 TRF Tandem_Repeat 157162 158162 1056 + . . scaffold1601 GLEAN mRNA 157139 158162 0.395542 + . ID=CGI_10010252; scaffold1601 TRF Tandem_Repeat 157139 158162 1036 + . . scaffold1601 GLEAN mRNA 199769 200051 0.766035 - . ID=CGI_10010254; scaffold1601 TRF Tandem_Repeat 199769 200051 261 + . . scaffold1601 GLEAN mRNA 203042 203757 0.766035 - . ID=CGI_10010254; scaffold1601 TRF Tandem_Repeat 203042 203757 1132 + . . scaffold1601 GLEAN mRNA 203927 204082 0.766035 - . ID=CGI_10010254; scaffold1601 TRF Tandem_Repeat 203927 204082 267 + . . scaffold1601 GLEAN mRNA 206894 206934 0.766035 - . ID=CGI_10010254; scaffold1601 TRF Tandem_Repeat 206894 206934 82 + . . scaffold1601 GLEAN mRNA 208170 208231 0.766035 - . ID=CGI_10010254; scaffold1601 TRF Tandem_Repeat 208170 208231 54 + . . scaffold1601 GLEAN mRNA 208170 208231 0.766035 - . ID=CGI_10010254; scaffold1601 TRF Tandem_Repeat 208170 208231 54 + . . scaffold1601 GLEAN mRNA 209143 209696 0.766035 - . ID=CGI_10010254; scaffold1601 TRF Tandem_Repeat 209143 209696 686 + . . scaffold1815 GLEAN mRNA 17946 18036 0.348078 - . ID=CGI_10010259; scaffold1815 TRF Tandem_Repeat 17946 18036 155 + . . scaffold1815 GLEAN mRNA 17986 18091 0.348078 - . ID=CGI_10010259; scaffold1815 TRF Tandem_Repeat 17986 18091 95 + . . scaffold1815 GLEAN mRNA 19503 19609 0.348078 - . ID=CGI_10010259; scaffold1815 TRF Tandem_Repeat 19503 19609 133 + . . scaffold1815 GLEAN mRNA 30095 30133 0.348078 - . ID=CGI_10010259; scaffold1815 TRF Tandem_Repeat 30095 30133 60 + . . scaffold1815 GLEAN mRNA 32231 32297 0.348078 - . ID=CGI_10010259; scaffold1815 TRF Tandem_Repeat 32231 32297 71 + . . scaffold1815 GLEAN mRNA 32792 32825 0.348078 - . ID=CGI_10010259; scaffold1815 TRF Tandem_Repeat 32792 32825 68 + . . scaffold1815 GLEAN mRNA 32823 32855 0.348078 - . ID=CGI_10010259; scaffold1815 TRF Tandem_Repeat 32823 32855 66 + . . scaffold1815 GLEAN mRNA 33043 33089 0.348078 - . ID=CGI_10010259; scaffold1815 TRF Tandem_Repeat 33043 33089 94 + . . scaffold1815 GLEAN mRNA 32231 32297 0.99879 + . ID=CGI_10010260; scaffold1815 TRF Tandem_Repeat 32231 32297 71 + . . scaffold1815 GLEAN mRNA 32792 32825 0.99879 + . ID=CGI_10010260; scaffold1815 TRF Tandem_Repeat 32792 32825 68 + . . scaffold1815 GLEAN mRNA 32823 32855 0.99879 + . ID=CGI_10010260; scaffold1815 TRF Tandem_Repeat 32823 32855 66 + . . scaffold1815 GLEAN mRNA 33043 33089 0.99879 + . ID=CGI_10010260; scaffold1815 TRF Tandem_Repeat 33043 33089 94 + . . scaffold1815 GLEAN mRNA 35478 35544 0.99879 + . ID=CGI_10010260; scaffold1815 TRF Tandem_Repeat 35478 35544 89 + . . scaffold1815 GLEAN mRNA 44902 45222 0.999999 + . ID=CGI_10010261; scaffold1815 WUBlastX LTR_Pao 44902 45222 34 - . . scaffold1815 GLEAN mRNA 44965 46344 0.999999 + . ID=CGI_10010261; scaffold1815 WUBlastX LTR_Pao 44965 46344 735 - . . scaffold1815 GLEAN mRNA 46347 47381 0.999999 + . ID=CGI_10010261; scaffold1815 WUBlastX LTR_Pao 46347 47381 163 - . . scaffold1815 GLEAN mRNA 45259 46722 0.999999 + . ID=CGI_10010261; scaffold1815 WUBlastX LTR_Pao 45259 46722 629 - . . scaffold1815 GLEAN mRNA 106383 106431 1 - . ID=CGI_10010265; scaffold1815 TRF Tandem_Repeat 106383 106431 98 + . . scaffold1815 GLEAN mRNA 170698 170724 0.911004 - . ID=CGI_10010267; scaffold1815 TRF Tandem_Repeat 170698 170724 54 + . . scaffold1815 GLEAN mRNA 170910 170960 0.911004 - . ID=CGI_10010267; scaffold1815 TRF Tandem_Repeat 170910 170960 50 + . . scaffold1815 GLEAN mRNA 170917 170962 0.911004 - . ID=CGI_10010267; scaffold1815 TRF Tandem_Repeat 170917 170962 56 + . . scaffold1815 GLEAN mRNA 201046 201169 0.999789 + . ID=CGI_10010269; scaffold1815 TRF Tandem_Repeat 201046 201169 221 + . . scaffold1815 GLEAN mRNA 220450 220963 0.948466 + . ID=CGI_10010270; scaffold1815 TRF Tandem_Repeat 220450 220963 902 + . . scaffold1815 GLEAN mRNA 223446 223498 0.948466 + . ID=CGI_10010270; scaffold1815 TRF Tandem_Repeat 223446 223498 79 + . . scaffold1815 GLEAN mRNA 223446 223498 0.948466 + . ID=CGI_10010270; scaffold1815 TRF Tandem_Repeat 223446 223498 83 + . . scaffold1815 GLEAN mRNA 227709 228189 0.948466 + . ID=CGI_10010270; scaffold1815 TRF Tandem_Repeat 227709 228189 305 + . . scaffold1815 GLEAN mRNA 232170 232774 0.948466 + . ID=CGI_10010270; scaffold1815 TRF Tandem_Repeat 232170 232774 991 + . . scaffold1815 GLEAN mRNA 237374 237482 0.998748 - . ID=CGI_10010271; scaffold1815 WUBlastX LINE_L2 237351 237482 37 - . . scaffold1815 GLEAN mRNA 237494 237598 0.998748 - . ID=CGI_10010271; scaffold1815 WUBlastX LINE_L1 237494 237598 61 - . . scaffold1637 GLEAN mRNA 10603 10651 0.409292 + . ID=CGI_10010272; scaffold1637 TRF Tandem_Repeat 10603 10651 57 + . . scaffold1637 GLEAN mRNA 13563 14048 0.409292 + . ID=CGI_10010272; scaffold1637 WUBlastX LTR_Gypsy 13563 14048 40 + . . scaffold1637 GLEAN mRNA 43707 43861 0.998439 - . ID=CGI_10010275; scaffold1637 TRF Tandem_Repeat 43707 43861 247 + . . scaffold1637 GLEAN mRNA 70400 70431 0.646323 - . ID=CGI_10010276; scaffold1637 TRF Tandem_Repeat 70400 70431 64 + . . scaffold1637 GLEAN mRNA 101421 101497 0.985176 - . ID=CGI_10010277; scaffold1637 TRF Tandem_Repeat 101421 101497 154 + . . scaffold1637 GLEAN mRNA 152499 153405 0.63167 - . ID=CGI_10010279; scaffold1637 TRF Tandem_Repeat 152499 153405 1235 + . . scaffold1637 GLEAN mRNA 154028 154074 0.63167 - . ID=CGI_10010279; scaffold1637 TRF Tandem_Repeat 154028 154074 67 + . . scaffold1637 GLEAN mRNA 162592 162625 0.63167 - . ID=CGI_10010279; scaffold1637 TRF Tandem_Repeat 162592 162625 59 + . . scaffold1637 GLEAN mRNA 165882 165911 0.63167 - . ID=CGI_10010279; scaffold1637 TRF Tandem_Repeat 165882 165911 51 + . . scaffold1637 GLEAN mRNA 190628 190691 0.63167 - . ID=CGI_10010279; scaffold1637 TRF Tandem_Repeat 190628 190691 83 + . . scaffold1637 GLEAN mRNA 185799 186137 0.63167 - . ID=CGI_10010279; scaffold1637 WUBlastX DNA_TcMar-Marin 185799 186137 55 + . . scaffold1637 GLEAN mRNA 223197 223233 0.783977 - . ID=CGI_10010282; scaffold1637 TRF Tandem_Repeat 223197 223233 65 + . . scaffold1637 GLEAN mRNA 227646 227883 0.783977 - . ID=CGI_10010282; scaffold1637 TRF Tandem_Repeat 227646 227883 210 + . . scaffold1637 GLEAN mRNA 255518 255572 1 + . ID=CGI_10010284; scaffold1637 TRF Tandem_Repeat 255518 255572 74 + . . scaffold1637 GLEAN mRNA 255522 255556 1 + . ID=CGI_10010284; scaffold1637 TRF Tandem_Repeat 255522 255556 70 + . . scaffold831 GLEAN mRNA 23710 23763 1 + . ID=CGI_10010286; scaffold831 TRF Tandem_Repeat 23710 23763 56 + . . scaffold831 GLEAN mRNA 23710 23760 1 + . ID=CGI_10010286; scaffold831 TRF Tandem_Repeat 23710 23760 50 + . . scaffold831 GLEAN mRNA 30660 30718 1 + . ID=CGI_10010286; scaffold831 TRF Tandem_Repeat 30660 30718 118 + . . scaffold831 GLEAN mRNA 22267 22560 1 + . ID=CGI_10010286; scaffold831 WUBlastX LTR_Ngaro 22267 22560 45 + . . scaffold831 GLEAN mRNA 86850 86953 0.731433 + . ID=CGI_10010289; scaffold831 TRF Tandem_Repeat 86850 86953 120 + . . scaffold831 GLEAN mRNA 104968 105018 1 + . ID=CGI_10010290; scaffold831 TRF Tandem_Repeat 104968 105018 68 + . . scaffold831 GLEAN mRNA 109450 109539 1 + . ID=CGI_10010290; scaffold831 TRF Tandem_Repeat 109450 109539 51 + . . scaffold831 GLEAN mRNA 111851 111910 1 + . ID=CGI_10010290; scaffold831 TRF Tandem_Repeat 111851 111910 93 + . . scaffold831 GLEAN mRNA 114060 114423 1 + . ID=CGI_10010290; scaffold831 TRF Tandem_Repeat 114060 114423 665 + . . scaffold831 GLEAN mRNA 192137 192164 0.766028 - . ID=CGI_10010292; scaffold831 TRF Tandem_Repeat 192137 192164 56 + . . scaffold831 GLEAN mRNA 192162 192204 0.766028 - . ID=CGI_10010292; scaffold831 TRF Tandem_Repeat 192162 192204 86 + . . scaffold43426 GLEAN mRNA 34632 35464 0.99967 + . ID=CGI_10010296; scaffold43426 TRF Tandem_Repeat 34632 35464 1211 + . . scaffold43426 GLEAN mRNA 43386 43487 0.999995 + . ID=CGI_10010297; scaffold43426 TRF Tandem_Repeat 43386 43487 64 + . . scaffold43426 GLEAN mRNA 182530 182588 0.99935 - . ID=CGI_10010307; scaffold43426 TRF Tandem_Repeat 182530 182588 88 + . . scaffold43426 GLEAN mRNA 217863 217919 0.989767 - . ID=CGI_10010311; scaffold43426 TRF Tandem_Repeat 217863 217919 50 + . . scaffold43426 GLEAN mRNA 217861 217931 0.989767 - . ID=CGI_10010311; scaffold43426 TRF Tandem_Repeat 217861 217931 72 + . . scaffold450 GLEAN mRNA 67987 68083 0.505252 - . ID=CGI_10010319; scaffold450 TRF Tandem_Repeat 67987 68083 90 + . . scaffold450 GLEAN mRNA 68437 68563 0.505252 - . ID=CGI_10010319; scaffold450 TRF Tandem_Repeat 68437 68563 218 + . . scaffold450 GLEAN mRNA 73187 73222 0.505252 - . ID=CGI_10010319; scaffold450 TRF Tandem_Repeat 73187 73222 72 + . . scaffold450 GLEAN mRNA 74250 74276 0.505252 - . ID=CGI_10010319; scaffold450 TRF Tandem_Repeat 74250 74276 54 + . . scaffold450 GLEAN mRNA 76450 76487 0.505252 - . ID=CGI_10010319; scaffold450 TRF Tandem_Repeat 76450 76487 58 + . . scaffold450 GLEAN mRNA 78011 78046 0.505252 - . ID=CGI_10010319; scaffold450 TRF Tandem_Repeat 78011 78046 63 + . . scaffold450 GLEAN mRNA 78045 78091 0.505252 - . ID=CGI_10010319; scaffold450 TRF Tandem_Repeat 78045 78091 94 + . . scaffold450 GLEAN mRNA 79786 80043 0.505252 - . ID=CGI_10010319; scaffold450 WUBlastX LTR_Gypsy 79786 80043 141 - . . scaffold450 GLEAN mRNA 79714 79764 0.505252 - . ID=CGI_10010319; scaffold450 WUBlastX LTR_Gypsy 79714 79764 21 - . . scaffold450 GLEAN mRNA 79735 80106 0.505252 - . ID=CGI_10010319; scaffold450 WUBlastX LTR_Gypsy 79735 80106 109 - . . scaffold450 GLEAN mRNA 83186 83233 0.937783 - . ID=CGI_10010320; scaffold450 TRF Tandem_Repeat 83186 83233 87 + . . scaffold450 GLEAN mRNA 89096 89168 0.937783 - . ID=CGI_10010320; scaffold450 TRF Tandem_Repeat 89096 89168 58 + . . scaffold450 GLEAN mRNA 89118 89196 0.937783 - . ID=CGI_10010320; scaffold450 TRF Tandem_Repeat 89118 89196 68 + . . scaffold450 GLEAN mRNA 89117 89200 0.937783 - . ID=CGI_10010320; scaffold450 TRF Tandem_Repeat 89117 89200 70 + . . scaffold450 GLEAN mRNA 89126 89202 0.937783 - . ID=CGI_10010320; scaffold450 TRF Tandem_Repeat 89126 89202 59 + . . scaffold450 GLEAN mRNA 111724 111993 0.996213 - . ID=CGI_10010321; scaffold450 WUBlastX LTR_DIRS 111724 111993 154 + . . scaffold450 GLEAN mRNA 158531 158609 0.999714 - . ID=CGI_10010322; scaffold450 TRF Tandem_Repeat 158531 158609 95 + . . scaffold450 GLEAN mRNA 159052 159151 0.999714 - . ID=CGI_10010322; scaffold450 TRF Tandem_Repeat 159052 159151 119 + . . scaffold450 GLEAN mRNA 159286 159321 0.999714 - . ID=CGI_10010322; scaffold450 TRF Tandem_Repeat 159286 159321 72 + . . scaffold450 GLEAN mRNA 159965 159996 0.999714 - . ID=CGI_10010322; scaffold450 TRF Tandem_Repeat 159965 159996 64 + . . scaffold450 GLEAN mRNA 160820 160879 0.999714 - . ID=CGI_10010322; scaffold450 TRF Tandem_Repeat 160820 160879 120 + . . scaffold450 GLEAN mRNA 160821 161040 0.999714 - . ID=CGI_10010322; scaffold450 TRF Tandem_Repeat 160821 161040 77 + . . scaffold450 GLEAN mRNA 160825 161032 0.999714 - . ID=CGI_10010322; scaffold450 TRF Tandem_Repeat 160825 161032 67 + . . scaffold450 GLEAN mRNA 224408 224455 0.967355 - . ID=CGI_10010326; scaffold450 TRF Tandem_Repeat 224408 224455 96 + . . scaffold450 GLEAN mRNA 228748 228792 0.967355 - . ID=CGI_10010326; scaffold450 TRF Tandem_Repeat 228748 228792 72 + . . scaffold294 GLEAN mRNA 52358 52403 0.786092 + . ID=CGI_10010329; scaffold294 TRF Tandem_Repeat 52358 52403 92 + . . scaffold294 GLEAN mRNA 83899 84198 0.549751 - . ID=CGI_10010330; scaffold294 WUBlastX LINE_L1-Tx1 83899 84198 42 - . . scaffold294 GLEAN mRNA 98075 98139 0.923509 + . ID=CGI_10010333; scaffold294 TRF Tandem_Repeat 98075 98139 130 + . . scaffold294 GLEAN mRNA 98181 98211 0.923509 + . ID=CGI_10010333; scaffold294 TRF Tandem_Repeat 98181 98211 62 + . . scaffold294 GLEAN mRNA 135695 136594 0.889486 - . ID=CGI_10010334; scaffold294 WUBlastX LINE_L2 135695 136594 486 - . . scaffold294 GLEAN mRNA 136082 136708 0.889486 - . ID=CGI_10010334; scaffold294 WUBlastX LINE_CR1 136082 136708 56 - . . scaffold294 GLEAN mRNA 154532 154713 0.999432 - . ID=CGI_10010336; scaffold294 TRF Tandem_Repeat 154532 154713 215 + . . scaffold294 GLEAN mRNA 259152 259638 0.954159 + . ID=CGI_10010342; scaffold294 TRF Tandem_Repeat 259152 259638 586 + . . scaffold294 GLEAN mRNA 259152 259638 0.954159 + . ID=CGI_10010342; scaffold294 TRF Tandem_Repeat 259152 259638 653 + . . scaffold37 GLEAN mRNA 67146 67472 0.997729 + . ID=CGI_10010344; scaffold37 TRF Tandem_Repeat 67146 67472 166 + . . scaffold37 GLEAN mRNA 67516 67642 0.997729 + . ID=CGI_10010344; scaffold37 TRF Tandem_Repeat 67516 67642 87 + . . scaffold37 GLEAN mRNA 69710 69757 0.997729 + . ID=CGI_10010344; scaffold37 TRF Tandem_Repeat 69710 69757 96 + . . scaffold37 GLEAN mRNA 69755 69799 0.997729 + . ID=CGI_10010344; scaffold37 TRF Tandem_Repeat 69755 69799 90 + . . scaffold37 GLEAN mRNA 183851 183899 0.902129 + . ID=CGI_10010346; scaffold37 TRF Tandem_Repeat 183851 183899 80 + . . scaffold37 GLEAN mRNA 183897 183933 0.902129 + . ID=CGI_10010346; scaffold37 TRF Tandem_Repeat 183897 183933 74 + . . scaffold37 GLEAN mRNA 191743 191821 0.902129 + . ID=CGI_10010346; scaffold37 TRF Tandem_Repeat 191743 191821 158 + . . scaffold37 GLEAN mRNA 191852 191894 0.902129 + . ID=CGI_10010346; scaffold37 TRF Tandem_Repeat 191852 191894 77 + . . scaffold683 GLEAN mRNA 87133 87181 0.999674 + . ID=CGI_10010356; scaffold683 TRF Tandem_Repeat 87133 87181 50 + . . scaffold683 GLEAN mRNA 85741 85854 0.999674 + . ID=CGI_10010356; scaffold683 WUBlastX LINE_RTE-X 85741 85854 83 - . . scaffold683 GLEAN mRNA 81994 82086 0.999674 + . ID=CGI_10010356; scaffold683 WUBlastX LINE_RTE-X 81994 82086 42 - . . scaffold683 GLEAN mRNA 85741 85944 0.999674 + . ID=CGI_10010356; scaffold683 WUBlastX LINE_RTE-X 85741 85944 53 - . . scaffold683 GLEAN mRNA 84284 84376 0.999674 + . ID=CGI_10010356; scaffold683 WUBlastX LINE_RTE-X 84284 84376 42 - . . scaffold683 GLEAN mRNA 85726 85869 0.999674 + . ID=CGI_10010356; scaffold683 WUBlastX LINE_RTE-X 85726 85869 78 - . . scaffold683 GLEAN mRNA 84393 85721 0.999674 + . ID=CGI_10010356; scaffold683 WUBlastX LINE_RTE-X 84393 85721 542 - . . scaffold683 GLEAN mRNA 85720 85908 0.999674 + . ID=CGI_10010356; scaffold683 WUBlastX LINE_RTE-X 85720 85908 69 - . . scaffold683 GLEAN mRNA 82103 82888 0.999674 + . ID=CGI_10010356; scaffold683 WUBlastX LINE_RTE-X 82103 82888 198 - . . scaffold683 GLEAN mRNA 84158 84373 0.999674 + . ID=CGI_10010356; scaffold683 WUBlastX LINE_RTE-X 84158 84373 36 - . . scaffold683 GLEAN mRNA 81868 82083 0.999674 + . ID=CGI_10010356; scaffold683 WUBlastX LINE_RTE-X 81868 82083 36 - . . scaffold683 GLEAN mRNA 157019 157055 0.700222 + . ID=CGI_10010360; scaffold683 TRF Tandem_Repeat 157019 157055 65 + . . scaffold683 GLEAN mRNA 160271 160399 0.700222 + . ID=CGI_10010360; scaffold683 WUBlastX LINE_CR1-L2 160271 160399 70 - . . scaffold683 GLEAN mRNA 160437 160850 0.700222 + . ID=CGI_10010360; scaffold683 WUBlastX LINE_CR1 160437 160850 61 - . . scaffold683 GLEAN mRNA 160130 160435 0.700222 + . ID=CGI_10010360; scaffold683 WUBlastX LINE_CR1 160130 160435 22 - . . scaffold683 GLEAN mRNA 160265 160474 0.700222 + . ID=CGI_10010360; scaffold683 WUBlastX LINE_CR1-L2 160265 160474 65 - . . scaffold683 GLEAN mRNA 160190 160450 0.700222 + . ID=CGI_10010360; scaffold683 WUBlastX LINE_Jockey 160190 160450 33 - . . scaffold683 GLEAN mRNA 176105 176617 0.700222 + . ID=CGI_10010360; scaffold683 TRF Tandem_Repeat 176105 176617 190 + . . scaffold683 GLEAN mRNA 176112 176610 0.700222 + . ID=CGI_10010360; scaffold683 TRF Tandem_Repeat 176112 176610 563 + . . scaffold683 GLEAN mRNA 176112 176610 0.700222 + . ID=CGI_10010360; scaffold683 TRF Tandem_Repeat 176112 176610 536 + . . scaffold683 GLEAN mRNA 176179 176566 0.700222 + . ID=CGI_10010360; scaffold683 TRF Tandem_Repeat 176179 176566 261 + . . scaffold683 GLEAN mRNA 184463 184494 0.700222 + . ID=CGI_10010360; scaffold683 TRF Tandem_Repeat 184463 184494 55 + . . scaffold683 GLEAN mRNA 184525 185647 0.700222 + . ID=CGI_10010360; scaffold683 TRF Tandem_Repeat 184525 185647 1548 + . . scaffold683 GLEAN mRNA 189898 190250 0.700222 + . ID=CGI_10010360; scaffold683 TRF Tandem_Repeat 189898 190250 541 + . . scaffold683 GLEAN mRNA 193580 193912 0.700222 + . ID=CGI_10010360; scaffold683 WUBlastX LINE_RTE-X 193580 193912 54 - . . scaffold683 GLEAN mRNA 193324 193476 0.700222 + . ID=CGI_10010360; scaffold683 WUBlastX LINE_RTE-X 193324 193476 23 - . . scaffold683 GLEAN mRNA 193580 193972 0.700222 + . ID=CGI_10010360; scaffold683 WUBlastX LINE_RTE-X 193580 193972 48 - . . scaffold683 GLEAN mRNA 237901 238252 0.753786 + . ID=CGI_10010361; scaffold683 TRF Tandem_Repeat 237901 238252 332 + . . scaffold683 GLEAN mRNA 238271 238460 0.753786 + . ID=CGI_10010361; scaffold683 TRF Tandem_Repeat 238271 238460 147 + . . scaffold683 GLEAN mRNA 255543 255577 0.727757 + . ID=CGI_10010362; scaffold683 TRF Tandem_Repeat 255543 255577 61 + . . scaffold1445 GLEAN mRNA 111587 111630 0.989218 - . ID=CGI_10010367; scaffold1445 TRF Tandem_Repeat 111587 111630 88 + . . scaffold1445 GLEAN mRNA 112153 112186 0.989218 - . ID=CGI_10010367; scaffold1445 TRF Tandem_Repeat 112153 112186 68 + . . scaffold1445 GLEAN mRNA 134497 134726 0.788131 + . ID=CGI_10010369; scaffold1445 TRF Tandem_Repeat 134497 134726 311 + . . scaffold1445 GLEAN mRNA 137321 137524 0.904297 + . ID=CGI_10010370; scaffold1445 WUBlastX LINE_Jockey 137321 137524 35 + . . scaffold1445 GLEAN mRNA 192967 193578 0.699862 - . ID=CGI_10010372; scaffold1445 WUBlastX LTR_Gypsy-Cigr 192967 193578 164 - . . scaffold1445 GLEAN mRNA 225583 225670 0.644744 - . ID=CGI_10010374; scaffold1445 TRF Tandem_Repeat 225583 225670 131 + . . scaffold1445 GLEAN mRNA 215630 215926 0.644744 - . ID=CGI_10010374; scaffold1445 WUBlastX LTR_Gypsy 215630 215926 39 - . . scaffold1445 GLEAN mRNA 216414 216788 0.644744 - . ID=CGI_10010374; scaffold1445 WUBlastX LINE_L1-Tx1 216414 216788 29 - . . scaffold1445 GLEAN mRNA 217647 218231 0.644744 - . ID=CGI_10010374; scaffold1445 WUBlastX LINE_L1 217647 218231 45 - . . scaffold1445 GLEAN mRNA 222397 222723 0.644744 - . ID=CGI_10010374; scaffold1445 WUBlastX LTR_Gypsy 222397 222723 20 - . . scaffold1445 GLEAN mRNA 226294 226620 0.644744 - . ID=CGI_10010374; scaffold1445 WUBlastX LTR_Gypsy 226294 226620 20 - . . scaffold1445 GLEAN mRNA 226977 227303 0.644744 - . ID=CGI_10010374; scaffold1445 WUBlastX LTR_Gypsy 226977 227303 20 - . . scaffold1445 GLEAN mRNA 215486 215776 0.644744 - . ID=CGI_10010374; scaffold1445 WUBlastX LTR_Gypsy 215486 215776 43 - . . scaffold1445 GLEAN mRNA 216492 218138 0.644744 - . ID=CGI_10010374; scaffold1445 WUBlastX LINE_L1-Tx1 216492 218138 369 - . . scaffold1445 GLEAN mRNA 231018 231593 0.644744 - . ID=CGI_10010374; scaffold1445 TRF Tandem_Repeat 231018 231593 408 + . . scaffold1445 GLEAN mRNA 231036 231306 0.644744 - . ID=CGI_10010374; scaffold1445 TRF Tandem_Repeat 231036 231306 299 + . . scaffold1445 GLEAN mRNA 231035 231537 0.644744 - . ID=CGI_10010374; scaffold1445 TRF Tandem_Repeat 231035 231537 424 + . . scaffold1445 GLEAN mRNA 231035 231306 0.644744 - . ID=CGI_10010374; scaffold1445 TRF Tandem_Repeat 231035 231306 345 + . . scaffold1445 GLEAN mRNA 240417 240454 0.990769 - . ID=CGI_10010375; scaffold1445 TRF Tandem_Repeat 240417 240454 76 + . . scaffold1445 GLEAN mRNA 244558 244619 0.990769 - . ID=CGI_10010375; scaffold1445 TRF Tandem_Repeat 244558 244619 124 + . . scaffold1445 GLEAN mRNA 246175 246228 0.990769 - . ID=CGI_10010375; scaffold1445 TRF Tandem_Repeat 246175 246228 99 + . . scaffold1445 GLEAN mRNA 246368 246407 0.990769 - . ID=CGI_10010375; scaffold1445 TRF Tandem_Repeat 246368 246407 80 + . . scaffold1445 GLEAN mRNA 247113 247144 0.990769 - . ID=CGI_10010375; scaffold1445 TRF Tandem_Repeat 247113 247144 64 + . . scaffold1445 GLEAN mRNA 249077 249253 0.990769 - . ID=CGI_10010375; scaffold1445 WUBlastX LTR_Gypsy 249077 249379 31 - . . scaffold1678 GLEAN mRNA 10367 10424 0.228184 + . ID=CGI_10010377; scaffold1678 TRF Tandem_Repeat 10367 10424 52 + . . scaffold1678 GLEAN mRNA 12376 12548 0.228184 + . ID=CGI_10010377; scaffold1678 TRF Tandem_Repeat 12376 12548 310 + . . scaffold1678 GLEAN mRNA 10367 10424 0.472128 - . ID=CGI_10010378; scaffold1678 TRF Tandem_Repeat 10367 10424 52 + . . scaffold1678 GLEAN mRNA 12376 12548 0.472128 - . ID=CGI_10010378; scaffold1678 TRF Tandem_Repeat 12376 12548 310 + . . scaffold1678 GLEAN mRNA 35023 35080 0.995329 + . ID=CGI_10010379; scaffold1678 TRF Tandem_Repeat 35023 35080 75 + . . scaffold1678 GLEAN mRNA 41110 41150 0.995329 + . ID=CGI_10010379; scaffold1678 TRF Tandem_Repeat 41110 41150 82 + . . scaffold1678 GLEAN mRNA 41819 41867 0.995329 + . ID=CGI_10010379; scaffold1678 TRF Tandem_Repeat 41819 41867 98 + . . scaffold1678 GLEAN mRNA 35023 35080 0.781982 - . ID=CGI_10010380; scaffold1678 TRF Tandem_Repeat 35023 35080 75 + . . scaffold1678 GLEAN mRNA 57070 57098 0.989782 + . ID=CGI_10010381; scaffold1678 TRF Tandem_Repeat 57070 57098 58 + . . scaffold1678 GLEAN mRNA 106093 107554 0.957739 - . ID=CGI_10010382; scaffold1678 TRF Tandem_Repeat 106093 107554 2012 + . . scaffold1678 GLEAN mRNA 106093 107554 0.957739 - . ID=CGI_10010382; scaffold1678 TRF Tandem_Repeat 106093 107554 2015 + . . scaffold1678 GLEAN mRNA 107585 107636 0.957739 - . ID=CGI_10010382; scaffold1678 TRF Tandem_Repeat 107585 107636 68 + . . scaffold1678 GLEAN mRNA 110938 110967 0.957739 - . ID=CGI_10010382; scaffold1678 TRF Tandem_Repeat 110938 110967 60 + . . scaffold1678 GLEAN mRNA 115534 115586 0.957739 - . ID=CGI_10010382; scaffold1678 TRF Tandem_Repeat 115534 115586 106 + . . scaffold1678 GLEAN mRNA 141238 141293 0.998289 - . ID=CGI_10010385; scaffold1678 TRF Tandem_Repeat 141238 141293 112 + . . scaffold1678 GLEAN mRNA 162412 162795 0.290685 - . ID=CGI_10010386; scaffold1678 TRF Tandem_Repeat 162412 162795 463 + . . scaffold1678 GLEAN mRNA 169218 169699 0.290685 - . ID=CGI_10010386; scaffold1678 TRF Tandem_Repeat 169218 169699 639 + . . scaffold1678 GLEAN mRNA 171013 171065 0.290685 - . ID=CGI_10010386; scaffold1678 TRF Tandem_Repeat 171013 171065 70 + . . scaffold1678 GLEAN mRNA 172480 172566 0.290685 - . ID=CGI_10010386; scaffold1678 TRF Tandem_Repeat 172480 172566 104 + . . scaffold1678 GLEAN mRNA 172659 172867 0.290685 - . ID=CGI_10010386; scaffold1678 TRF Tandem_Repeat 172659 172867 131 + . . scaffold1678 GLEAN mRNA 172867 173013 0.290685 - . ID=CGI_10010386; scaffold1678 TRF Tandem_Repeat 172867 173013 89 + . . scaffold1678 GLEAN mRNA 175483 175956 0.290685 - . ID=CGI_10010386; scaffold1678 WUBlastX LINE_L1 175483 175956 24 - . . scaffold1678 GLEAN mRNA 173544 173753 0.290685 - . ID=CGI_10010386; scaffold1678 WUBlastX DNA_IS4EU 173544 173753 62 + . . scaffold1678 GLEAN mRNA 174224 174382 0.290685 - . ID=CGI_10010386; scaffold1678 WUBlastX DNA_IS4EU 174224 174382 31 + . . scaffold1678 GLEAN mRNA 183240 183668 0.998223 + . ID=CGI_10010387; scaffold1678 TRF Tandem_Repeat 183240 183668 410 + . . scaffold1678 GLEAN mRNA 183240 184538 0.998223 + . ID=CGI_10010387; scaffold1678 TRF Tandem_Repeat 183240 184538 706 + . . scaffold1678 GLEAN mRNA 183240 184538 0.998223 + . ID=CGI_10010387; scaffold1678 TRF Tandem_Repeat 183240 184538 962 + . . scaffold1678 GLEAN mRNA 183666 184538 0.998223 + . ID=CGI_10010387; scaffold1678 TRF Tandem_Repeat 183666 184538 948 + . . scaffold1678 GLEAN mRNA 187240 187282 0.998223 + . ID=CGI_10010387; scaffold1678 TRF Tandem_Repeat 187240 187282 86 + . . scaffold1678 GLEAN mRNA 190392 190450 0.998223 + . ID=CGI_10010387; scaffold1678 TRF Tandem_Repeat 190392 190450 118 + . . scaffold1678 GLEAN mRNA 200410 200436 0.999064 - . ID=CGI_10010389; scaffold1678 TRF Tandem_Repeat 200410 200436 54 + . . scaffold1678 GLEAN mRNA 215470 215753 0.926733 + . ID=CGI_10010390; scaffold1678 TRF Tandem_Repeat 215470 215753 460 + . . scaffold1678 GLEAN mRNA 238620 238843 0.999926 - . ID=CGI_10010394; scaffold1678 TRF Tandem_Repeat 238620 238843 306 + . . scaffold1678 GLEAN mRNA 238620 238837 0.999926 - . ID=CGI_10010394; scaffold1678 TRF Tandem_Repeat 238620 238837 267 + . . scaffold43446 GLEAN mRNA 34960 35006 0.999988 + . ID=CGI_10010397; scaffold43446 TRF Tandem_Repeat 34960 35006 67 + . . scaffold43446 GLEAN mRNA 86815 86868 0.999963 + . ID=CGI_10010398; scaffold43446 TRF Tandem_Repeat 86815 86868 108 + . . scaffold43446 GLEAN mRNA 142286 142406 0.644171 + . ID=CGI_10010402; scaffold43446 TRF Tandem_Repeat 142286 142406 163 + . . scaffold43446 GLEAN mRNA 142271 142416 0.644171 + . ID=CGI_10010402; scaffold43446 TRF Tandem_Repeat 142271 142416 138 + . . scaffold43446 GLEAN mRNA 142931 142966 0.644171 + . ID=CGI_10010402; scaffold43446 TRF Tandem_Repeat 142931 142966 58 + . . scaffold43446 GLEAN mRNA 163039 163227 0.907649 - . ID=CGI_10010403; scaffold43446 WUBlastX LINE_CR1 163039 163227 55 + . . scaffold43446 GLEAN mRNA 163235 163330 0.907649 - . ID=CGI_10010403; scaffold43446 WUBlastX LINE_CR1 163235 163330 48 + . . scaffold43446 GLEAN mRNA 161921 163021 0.907649 - . ID=CGI_10010403; scaffold43446 WUBlastX LINE_CR1 161921 163021 188 + . . scaffold43446 GLEAN mRNA 161837 162007 0.907649 - . ID=CGI_10010403; scaffold43446 WUBlastX LINE_Rex-Babar 161837 162007 49 + . . scaffold43446 GLEAN mRNA 162476 163021 0.907649 - . ID=CGI_10010403; scaffold43446 WUBlastX LINE_CR1 162476 163021 189 + . . scaffold43446 GLEAN mRNA 163235 163363 0.907649 - . ID=CGI_10010403; scaffold43446 WUBlastX LINE_CR1 163235 163363 41 + . . scaffold43446 GLEAN mRNA 181312 181434 0.996568 - . ID=CGI_10010404; scaffold43446 TRF Tandem_Repeat 181312 181434 85 + . . scaffold43446 GLEAN mRNA 183641 183683 0.996568 - . ID=CGI_10010404; scaffold43446 TRF Tandem_Repeat 183641 183683 86 + . . scaffold43446 GLEAN mRNA 186252 186308 0.996568 - . ID=CGI_10010404; scaffold43446 TRF Tandem_Repeat 186252 186308 96 + . . scaffold43446 GLEAN mRNA 188416 188535 0.996568 - . ID=CGI_10010404; scaffold43446 WUBlastX LINE_RTE-X 188416 188535 24 + . . scaffold43446 GLEAN mRNA 187899 188378 0.996568 - . ID=CGI_10010404; scaffold43446 WUBlastX LINE_RTE-X 187899 188378 24 + . . scaffold43446 GLEAN mRNA 196921 196971 0.996568 - . ID=CGI_10010404; scaffold43446 TRF Tandem_Repeat 196921 196971 57 + . . scaffold43446 GLEAN mRNA 200177 201655 0.996568 - . ID=CGI_10010404; scaffold43446 WUBlastX LINE_CR1 200177 201655 132 + . . scaffold43446 GLEAN mRNA 200621 202603 0.996568 - . ID=CGI_10010404; scaffold43446 WUBlastX LINE_RTE-X 200621 202603 878 + . . scaffold43446 GLEAN mRNA 210057 210223 1 + . ID=CGI_10010406; scaffold43446 TRF Tandem_Repeat 210057 210223 307 + . . scaffold43446 GLEAN mRNA 214632 214664 0.593367 - . ID=CGI_10010407; scaffold43446 TRF Tandem_Repeat 214632 214664 66 + . . scaffold43446 GLEAN mRNA 235203 235384 0.999025 + . ID=CGI_10010409; scaffold43446 TRF Tandem_Repeat 235203 235384 208 + . . scaffold43446 GLEAN mRNA 235203 235384 1 - . ID=CGI_10010410; scaffold43446 TRF Tandem_Repeat 235203 235384 208 + . . scaffold43446 GLEAN mRNA 244474 244514 0.999224 - . ID=CGI_10010411; scaffold43446 TRF Tandem_Repeat 244474 244514 55 + . . scaffold43446 GLEAN mRNA 244755 245092 0.999224 - . ID=CGI_10010411; scaffold43446 TRF Tandem_Repeat 244755 245092 419 + . . scaffold43446 GLEAN mRNA 244755 245206 0.999224 - . ID=CGI_10010411; scaffold43446 TRF Tandem_Repeat 244755 245206 449 + . . scaffold1203 GLEAN mRNA 19160 19359 0.99967 - . ID=CGI_10010417; scaffold1203 TRF Tandem_Repeat 19160 19359 140 + . . scaffold1203 GLEAN mRNA 19111 19280 0.99967 - . ID=CGI_10010417; scaffold1203 TRF Tandem_Repeat 19111 19280 101 + . . scaffold1203 GLEAN mRNA 20252 21018 0.99967 - . ID=CGI_10010417; scaffold1203 TRF Tandem_Repeat 20252 21018 938 + . . scaffold1203 GLEAN mRNA 21130 21161 0.99967 - . ID=CGI_10010417; scaffold1203 TRF Tandem_Repeat 21130 21161 55 + . . scaffold1203 GLEAN mRNA 96821 97435 0.992512 + . ID=CGI_10010424; scaffold1203 WUBlastX LINE_R2-Hero 96821 97435 67 + . . scaffold1203 GLEAN mRNA 97426 97500 0.992512 + . ID=CGI_10010424; scaffold1203 WUBlastX LINE_R2-Hero 97426 97500 53 + . . scaffold1203 GLEAN mRNA 98076 98174 0.992512 + . ID=CGI_10010424; scaffold1203 WUBlastX LINE_R2-Hero 98076 98174 43 + . . scaffold1203 GLEAN mRNA 106773 106827 0.922043 - . ID=CGI_10010425; scaffold1203 TRF Tandem_Repeat 106773 106827 83 + . . scaffold1203 GLEAN mRNA 106901 106938 0.922043 - . ID=CGI_10010425; scaffold1203 TRF Tandem_Repeat 106901 106938 76 + . . scaffold1203 GLEAN mRNA 108401 108476 0.922043 - . ID=CGI_10010425; scaffold1203 TRF Tandem_Repeat 108401 108476 86 + . . scaffold1203 GLEAN mRNA 108400 108479 0.922043 - . ID=CGI_10010425; scaffold1203 TRF Tandem_Repeat 108400 108479 90 + . . scaffold1203 GLEAN mRNA 108401 108477 0.922043 - . ID=CGI_10010425; scaffold1203 TRF Tandem_Repeat 108401 108477 84 + . . scaffold1203 GLEAN mRNA 124561 124693 0.995805 + . ID=CGI_10010427; scaffold1203 TRF Tandem_Repeat 124561 124693 119 + . . scaffold1203 GLEAN mRNA 126018 126559 0.995805 + . ID=CGI_10010427; scaffold1203 TRF Tandem_Repeat 126018 126559 798 + . . scaffold1203 GLEAN mRNA 126562 126859 0.995805 + . ID=CGI_10010427; scaffold1203 TRF Tandem_Repeat 126562 126859 311 + . . scaffold1203 GLEAN mRNA 132620 132665 0.995805 + . ID=CGI_10010427; scaffold1203 TRF Tandem_Repeat 132620 132665 58 + . . scaffold1203 GLEAN mRNA 134260 135582 0.995805 + . ID=CGI_10010427; scaffold1203 TRF Tandem_Repeat 134260 135582 2265 + . . scaffold1203 GLEAN mRNA 144260 144346 0.648541 + . ID=CGI_10010428; scaffold1203 WUBlastX LINE_RTE-X 144260 144346 21 + . . scaffold1203 GLEAN mRNA 201987 202031 0.937847 + . ID=CGI_10010435; scaffold1203 TRF Tandem_Repeat 201987 202031 90 + . . scaffold1203 GLEAN mRNA 202054 202094 0.937847 + . ID=CGI_10010435; scaffold1203 TRF Tandem_Repeat 202054 202094 82 + . . scaffold1203 GLEAN mRNA 256022 256133 0.998693 - . ID=CGI_10010438; scaffold1203 TRF Tandem_Repeat 256022 256133 54 + . . scaffold1203 GLEAN mRNA 256063 256212 0.998693 - . ID=CGI_10010438; scaffold1203 TRF Tandem_Repeat 256063 256212 58 + . . scaffold1203 GLEAN mRNA 262138 262183 0.998693 - . ID=CGI_10010438; scaffold1203 TRF Tandem_Repeat 262138 262183 58 + . . scaffold1858 GLEAN mRNA 4762 4827 0.999375 - . ID=CGI_10010439; scaffold1858 TRF Tandem_Repeat 4762 4827 89 + . . scaffold1858 GLEAN mRNA 34994 35079 0.999375 - . ID=CGI_10010439; scaffold1858 TRF Tandem_Repeat 34994 35079 154 + . . scaffold1858 GLEAN mRNA 41299 41443 0.999375 - . ID=CGI_10010439; scaffold1858 TRF Tandem_Repeat 41299 41443 168 + . . scaffold1858 GLEAN mRNA 69200 69249 0.839673 + . ID=CGI_10010443; scaffold1858 TRF Tandem_Repeat 69200 69249 100 + . . scaffold1858 GLEAN mRNA 70705 70757 0.839673 + . ID=CGI_10010443; scaffold1858 TRF Tandem_Repeat 70705 70757 106 + . . scaffold1858 GLEAN mRNA 76374 76399 0.839673 + . ID=CGI_10010443; scaffold1858 TRF Tandem_Repeat 76374 76399 52 + . . scaffold1858 GLEAN mRNA 72248 72565 0.839673 + . ID=CGI_10010443; scaffold1858 WUBlastX LINE_CR1-L2 72248 72565 86 + . . scaffold1858 GLEAN mRNA 72140 72586 0.839673 + . ID=CGI_10010443; scaffold1858 WUBlastX LINE_CR1-L2 72140 72586 44 + . . scaffold1858 GLEAN mRNA 89153 89269 0.999249 - . ID=CGI_10010446; scaffold1858 WUBlastX RC_Helitron 89153 89269 21 - . . scaffold1858 GLEAN mRNA 100953 101911 0.999249 - . ID=CGI_10010446; scaffold1858 TRF Tandem_Repeat 100953 101911 1428 + . . scaffold1858 GLEAN mRNA 101942 101989 0.999249 - . ID=CGI_10010446; scaffold1858 TRF Tandem_Repeat 101942 101989 60 + . . scaffold1858 GLEAN mRNA 120862 121695 0.999351 - . ID=CGI_10010447; scaffold1858 WUBlastX LINE_L1-Tx1 120862 121695 123 - . . scaffold1858 GLEAN mRNA 121700 121972 0.999351 - . ID=CGI_10010447; scaffold1858 WUBlastX LINE_L1-Tx1 121700 121972 86 - . . scaffold1858 GLEAN mRNA 121944 122102 0.999351 - . ID=CGI_10010447; scaffold1858 WUBlastX LINE_L1-Tx1 121944 122102 111 - . . scaffold1858 GLEAN mRNA 121974 122357 0.999351 - . ID=CGI_10010447; scaffold1858 WUBlastX LINE_L1 121974 122357 32 - . . scaffold1858 GLEAN mRNA 121917 122141 0.999351 - . ID=CGI_10010447; scaffold1858 WUBlastX LINE_L1-Tx1 121917 122141 86 - . . scaffold1858 GLEAN mRNA 121944 122204 0.999351 - . ID=CGI_10010447; scaffold1858 WUBlastX LINE_L1 121944 122204 77 - . . scaffold1858 GLEAN mRNA 183137 183158 0.999676 - . ID=CGI_10010451; scaffold1858 TRF Tandem_Repeat 182613 183158 827 + . . scaffold1858 GLEAN mRNA 183137 183158 0.999676 - . ID=CGI_10010451; scaffold1858 TRF Tandem_Repeat 182613 183158 836 + . . scaffold1858 GLEAN mRNA 183137 183158 0.999676 - . ID=CGI_10010451; scaffold1858 TRF Tandem_Repeat 182613 183158 842 + . . scaffold1858 GLEAN mRNA 229017 229062 0.759183 + . ID=CGI_10010453; scaffold1858 TRF Tandem_Repeat 229017 229062 67 + . . scaffold1858 GLEAN mRNA 229012 229065 0.759183 + . ID=CGI_10010453; scaffold1858 TRF Tandem_Repeat 229012 229065 67 + . . scaffold1858 GLEAN mRNA 235271 235307 0.759183 + . ID=CGI_10010453; scaffold1858 TRF Tandem_Repeat 235271 235307 65 + . . scaffold1858 GLEAN mRNA 229232 230245 0.759183 + . ID=CGI_10010453; scaffold1858 TRF Tandem_Repeat 229232 230245 1580 + . . scaffold1858 GLEAN mRNA 251581 251618 0.999999 + . ID=CGI_10010455; scaffold1858 TRF Tandem_Repeat 251581 251618 76 + . . scaffold609 GLEAN mRNA 7184 7217 1 + . ID=CGI_10010458; scaffold609 TRF Tandem_Repeat 7184 7217 68 + . . scaffold609 GLEAN mRNA 7641 7682 1 + . ID=CGI_10010458; scaffold609 TRF Tandem_Repeat 7641 7682 84 + . . scaffold609 GLEAN mRNA 7841 7882 1 + . ID=CGI_10010458; scaffold609 TRF Tandem_Repeat 7841 7882 84 + . . scaffold609 GLEAN mRNA 186214 186438 0.840088 + . ID=CGI_10010464; scaffold609 WUBlastX LINE_RTE-X 186214 186438 130 - . . scaffold609 GLEAN mRNA 186076 186438 0.840088 + . ID=CGI_10010464; scaffold609 WUBlastX LINE_RTE-X 186076 186438 102 - . . scaffold1556 GLEAN mRNA 70299 70333 1 - . ID=CGI_10010472; scaffold1556 TRF Tandem_Repeat 70299 70333 70 + . . scaffold1556 GLEAN mRNA 101369 101746 0.999916 - . ID=CGI_10010473; scaffold1556 WUBlastX LINE_RTE-X 101369 101746 53 - . . scaffold1556 GLEAN mRNA 214457 214518 0.600311 - . ID=CGI_10010476; scaffold1556 TRF Tandem_Repeat 214457 214518 97 + . . scaffold1556 GLEAN mRNA 262882 263391 0.481266 - . ID=CGI_10010478; scaffold1556 TRF Tandem_Repeat 262882 263391 804 + . . scaffold43452 GLEAN mRNA 90881 90944 1 - . ID=CGI_10010481; scaffold43452 TRF Tandem_Repeat 90881 90944 83 + . . scaffold43452 GLEAN mRNA 92581 92629 1 - . ID=CGI_10010481; scaffold43452 TRF Tandem_Repeat 92581 92629 91 + . . scaffold43452 GLEAN mRNA 95394 97118 1 - . ID=CGI_10010481; scaffold43452 TRF Tandem_Repeat 95394 97118 1994 + . . scaffold43452 GLEAN mRNA 147634 148887 0.499173 + . ID=CGI_10010482; scaffold43452 WUBlastX DNA_hAT 147634 148887 346 + . . scaffold43452 GLEAN mRNA 162329 162361 1 - . ID=CGI_10010483; scaffold43452 TRF Tandem_Repeat 162329 162361 66 + . . scaffold43452 GLEAN mRNA 162664 162713 1 - . ID=CGI_10010483; scaffold43452 TRF Tandem_Repeat 162664 162713 59 + . . scaffold43452 GLEAN mRNA 183917 183981 0.998821 - . ID=CGI_10010484; scaffold43452 TRF Tandem_Repeat 183917 183981 67 + . . scaffold43452 GLEAN mRNA 183917 183981 0.999862 + . ID=CGI_10010485; scaffold43452 TRF Tandem_Repeat 183917 183981 67 + . . scaffold43452 GLEAN mRNA 190091 190123 0.999862 + . ID=CGI_10010485; scaffold43452 TRF Tandem_Repeat 190091 190123 57 + . . scaffold1882 GLEAN mRNA 18201 18527 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 18201 18527 26 + . . scaffold1882 GLEAN mRNA 18121 18228 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 18121 18228 51 + . . scaffold1882 GLEAN mRNA 18207 18446 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 18207 18446 176 + . . scaffold1882 GLEAN mRNA 18634 18897 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 18634 18897 75 + . . scaffold1882 GLEAN mRNA 18998 19423 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 18998 19423 336 + . . scaffold1882 GLEAN mRNA 19413 19478 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 19413 19478 34 + . . scaffold1882 GLEAN mRNA 19413 19496 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 19413 19496 27 + . . scaffold1882 GLEAN mRNA 18860 19432 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 18860 19432 131 + . . scaffold1882 GLEAN mRNA 34488 34547 0.546644 + . ID=CGI_10010493; scaffold1882 TRF Tandem_Repeat 34488 34547 75 + . . scaffold1882 GLEAN mRNA 34479 34546 0.546644 + . ID=CGI_10010493; scaffold1882 TRF Tandem_Repeat 34479 34546 64 + . . scaffold1882 GLEAN mRNA 34479 34538 0.546644 + . ID=CGI_10010493; scaffold1882 TRF Tandem_Repeat 34479 34538 84 + . . scaffold1882 GLEAN mRNA 95837 95882 0.734385 + . ID=CGI_10010498; scaffold1882 TRF Tandem_Repeat 95837 95882 92 + . . scaffold1882 GLEAN mRNA 98900 98943 0.734385 + . ID=CGI_10010498; scaffold1882 TRF Tandem_Repeat 98900 98943 88 + . . scaffold1882 GLEAN mRNA 111232 111612 0.593389 - . ID=CGI_10010501; scaffold1882 WUBlastX LTR_Gypsy 111232 111612 45 - . . scaffold1882 GLEAN mRNA 126103 126149 0.999999 + . ID=CGI_10010503; scaffold1882 TRF Tandem_Repeat 126103 126149 94 + . . scaffold1882 GLEAN mRNA 136729 137448 0.998989 + . ID=CGI_10010505; scaffold1882 TRF Tandem_Repeat 136729 137448 449 + . . scaffold1882 GLEAN mRNA 136839 137429 0.998989 + . ID=CGI_10010505; scaffold1882 TRF Tandem_Repeat 136839 137429 581 + . . scaffold1882 GLEAN mRNA 136839 137429 0.998989 + . ID=CGI_10010505; scaffold1882 TRF Tandem_Repeat 136839 137429 542 + . . scaffold1882 GLEAN mRNA 147918 148403 0.999129 + . ID=CGI_10010506; scaffold1882 WUBlastX LTR_DIRS 147918 148403 75 - . . scaffold1882 GLEAN mRNA 148929 149744 0.999129 + . ID=CGI_10010506; scaffold1882 WUBlastX LTR_DIRS 148929 149744 73 - . . scaffold1882 GLEAN mRNA 148372 148914 0.999129 + . ID=CGI_10010506; scaffold1882 WUBlastX LTR_Ngaro 148372 148914 99 - . . scaffold1882 GLEAN mRNA 148929 149618 0.999129 + . ID=CGI_10010506; scaffold1882 WUBlastX LTR_DIRS 148929 149618 156 - . . scaffold1882 GLEAN mRNA 147813 148403 0.999129 + . ID=CGI_10010506; scaffold1882 WUBlastX LTR_DIRS 147813 148403 66 - . . scaffold1882 GLEAN mRNA 160602 160668 1 + . ID=CGI_10010508; scaffold1882 TRF Tandem_Repeat 160602 160668 54 + . . scaffold1882 GLEAN mRNA 160602 160668 1 + . ID=CGI_10010508; scaffold1882 TRF Tandem_Repeat 160602 160668 66 + . . scaffold1882 GLEAN mRNA 177326 177522 0.965742 + . ID=CGI_10010510; scaffold1882 TRF Tandem_Repeat 177326 177522 89 + . . scaffold1882 GLEAN mRNA 177233 177529 0.965742 + . ID=CGI_10010510; scaffold1882 TRF Tandem_Repeat 177233 177529 490 + . . scaffold1882 GLEAN mRNA 180512 180959 0.472781 + . ID=CGI_10010511; scaffold1882 TRF Tandem_Repeat 180512 180959 666 + . . scaffold1882 GLEAN mRNA 180508 182050 0.472781 + . ID=CGI_10010511; scaffold1882 TRF Tandem_Repeat 180508 182050 1580 + . . scaffold1882 GLEAN mRNA 181034 182050 0.472781 + . ID=CGI_10010511; scaffold1882 TRF Tandem_Repeat 181034 182050 1469 + . . scaffold1882 GLEAN mRNA 182815 183004 0.472781 + . ID=CGI_10010511; scaffold1882 TRF Tandem_Repeat 182815 183004 353 + . . scaffold1882 GLEAN mRNA 188753 188966 0.472781 + . ID=CGI_10010511; scaffold1882 TRF Tandem_Repeat 188753 188966 185 + . . scaffold1882 GLEAN mRNA 189257 189449 0.472781 + . ID=CGI_10010511; scaffold1882 TRF Tandem_Repeat 189257 189449 260 + . . scaffold1723 GLEAN mRNA 29521 29586 0.998886 + . ID=CGI_10010514; scaffold1723 TRF Tandem_Repeat 29521 29586 57 + . . scaffold1723 GLEAN mRNA 31209 31474 0.998886 + . ID=CGI_10010514; scaffold1723 TRF Tandem_Repeat 31209 31474 523 + . . scaffold1723 GLEAN mRNA 49675 50080 0.386851 - . ID=CGI_10010516; scaffold1723 TRF Tandem_Repeat 49675 50080 227 + . . scaffold1723 GLEAN mRNA 49672 50027 0.386851 - . ID=CGI_10010516; scaffold1723 TRF Tandem_Repeat 49672 50027 302 + . . scaffold1723 GLEAN mRNA 54003 54151 0.386851 - . ID=CGI_10010516; scaffold1723 TRF Tandem_Repeat 54003 54151 107 + . . scaffold1723 GLEAN mRNA 84874 84905 0.428713 + . ID=CGI_10010517; scaffold1723 TRF Tandem_Repeat 84874 84905 64 + . . scaffold1723 GLEAN mRNA 85088 85149 0.428713 + . ID=CGI_10010517; scaffold1723 TRF Tandem_Repeat 85088 85149 124 + . . scaffold1723 GLEAN mRNA 168711 168757 0.8135 + . ID=CGI_10010523; scaffold1723 TRF Tandem_Repeat 168711 168757 85 + . . scaffold1723 GLEAN mRNA 177300 177393 0.8135 + . ID=CGI_10010523; scaffold1723 TRF Tandem_Repeat 177300 177393 75 + . . scaffold1723 GLEAN mRNA 182490 183314 0.8135 + . ID=CGI_10010523; scaffold1723 TRF Tandem_Repeat 182490 183314 1095 + . . scaffold1723 GLEAN mRNA 182490 183312 0.8135 + . ID=CGI_10010523; scaffold1723 TRF Tandem_Repeat 182490 183312 1117 + . . scaffold1723 GLEAN mRNA 248097 249018 1 - . ID=CGI_10010532; scaffold1723 TRF Tandem_Repeat 248097 249018 1372 + . . scaffold1723 GLEAN mRNA 248098 249318 1 - . ID=CGI_10010532; scaffold1723 TRF Tandem_Repeat 248098 249318 796 + . . scaffold1723 GLEAN mRNA 249039 249399 1 - . ID=CGI_10010532; scaffold1723 TRF Tandem_Repeat 249039 249399 596 + . . scaffold1723 GLEAN mRNA 250190 250539 1 - . ID=CGI_10010532; scaffold1723 TRF Tandem_Repeat 250190 250539 596 + . . scaffold1723 GLEAN mRNA 252161 252877 1 - . ID=CGI_10010532; scaffold1723 TRF Tandem_Repeat 252161 252877 1047 + . . scaffold1734 GLEAN mRNA 7433 7648 0.958077 + . ID=CGI_10010533; scaffold1734 TRF Tandem_Repeat 7433 7648 281 + . . scaffold1734 GLEAN mRNA 11017 11057 0.958077 + . ID=CGI_10010533; scaffold1734 TRF Tandem_Repeat 11017 11057 73 + . . scaffold1734 GLEAN mRNA 11244 11290 0.958077 + . ID=CGI_10010533; scaffold1734 TRF Tandem_Repeat 11244 11290 94 + . . scaffold1734 GLEAN mRNA 20356 20387 0.84036 + . ID=CGI_10010534; scaffold1734 TRF Tandem_Repeat 20356 20387 64 + . . scaffold1734 GLEAN mRNA 153832 154470 0.46186 + . ID=CGI_10010541; scaffold1734 WUBlastX LINE_CR1-L2 153832 154470 112 - . . scaffold1734 GLEAN mRNA 153895 154668 0.46186 + . ID=CGI_10010541; scaffold1734 WUBlastX LINE_L2 153895 154668 85 - . . scaffold1734 GLEAN mRNA 153991 154467 0.46186 + . ID=CGI_10010541; scaffold1734 WUBlastX LINE_L2 153991 154467 197 - . . scaffold1734 GLEAN mRNA 153676 154467 0.46186 + . ID=CGI_10010541; scaffold1734 WUBlastX LINE_CR1 153676 154467 83 - . . scaffold43522 GLEAN mRNA 48455 48504 0.544852 - . ID=CGI_10010546; scaffold43522 TRF Tandem_Repeat 48455 48504 100 + . . scaffold43522 GLEAN mRNA 49425 49466 0.544852 - . ID=CGI_10010546; scaffold43522 TRF Tandem_Repeat 49425 49466 59 + . . scaffold43522 GLEAN mRNA 92650 92922 0.999468 + . ID=CGI_10010551; scaffold43522 WUBlastX LINE_RTE-X 92650 92922 62 + . . scaffold43522 GLEAN mRNA 92707 92922 0.999468 + . ID=CGI_10010551; scaffold43522 WUBlastX LINE_RTE-X 92707 92922 77 + . . scaffold43522 GLEAN mRNA 92722 92985 0.999468 + . ID=CGI_10010551; scaffold43522 WUBlastX LINE_RTE-X 92722 92985 31 + . . scaffold43522 GLEAN mRNA 92491 92901 0.999468 + . ID=CGI_10010551; scaffold43522 WUBlastX LINE_RTE-X 92491 92901 21 + . . scaffold43522 GLEAN mRNA 101177 102064 0.999468 + . ID=CGI_10010551; scaffold43522 WUBlastX LINE_L1-Tx1 101177 102064 333 - . . scaffold43522 GLEAN mRNA 101393 102205 0.999468 + . ID=CGI_10010551; scaffold43522 WUBlastX LINE_L1 101393 102205 45 - . . scaffold43522 GLEAN mRNA 102908 102997 0.999468 + . ID=CGI_10010551; scaffold43522 WUBlastX LINE_L1 102908 102997 22 - . . scaffold43522 GLEAN mRNA 185212 185247 1 + . ID=CGI_10010559; scaffold43522 TRF Tandem_Repeat 185212 185247 56 + . . scaffold43522 GLEAN mRNA 191310 191338 0.987124 + . ID=CGI_10010561; scaffold43522 TRF Tandem_Repeat 191310 191338 58 + . . scaffold43522 GLEAN mRNA 201140 201187 0.481384 - . ID=CGI_10010562; scaffold43522 TRF Tandem_Repeat 201140 201187 96 + . . scaffold43522 GLEAN mRNA 220532 220583 1 - . ID=CGI_10010563; scaffold43522 TRF Tandem_Repeat 220532 220583 95 + . . scaffold43522 GLEAN mRNA 240399 240456 0.996336 + . ID=CGI_10010564; scaffold43522 TRF Tandem_Repeat 240399 240456 50 + . . scaffold43522 GLEAN mRNA 245090 245151 0.996336 + . ID=CGI_10010564; scaffold43522 TRF Tandem_Repeat 245090 245151 124 + . . scaffold43494 GLEAN mRNA 117114 117139 0.917945 - . ID=CGI_10010566; scaffold43494 TRF Tandem_Repeat 117114 117139 52 + . . scaffold43494 GLEAN mRNA 117892 117976 0.917945 - . ID=CGI_10010566; scaffold43494 TRF Tandem_Repeat 117892 117976 97 + . . scaffold43494 GLEAN mRNA 118225 118276 0.917945 - . ID=CGI_10010566; scaffold43494 TRF Tandem_Repeat 118225 118276 70 + . . scaffold43494 GLEAN mRNA 166730 166851 0.675621 - . ID=CGI_10010569; scaffold43494 TRF Tandem_Repeat 166730 166851 244 + . . scaffold43494 GLEAN mRNA 225823 225854 0.982563 + . ID=CGI_10010573; scaffold43494 TRF Tandem_Repeat 225823 225854 55 + . . scaffold43494 GLEAN mRNA 225854 225888 0.982563 + . ID=CGI_10010573; scaffold43494 TRF Tandem_Repeat 225854 225888 70 + . . scaffold473 GLEAN mRNA 5384 5535 0.999999 + . ID=CGI_10010578; scaffold473 TRF Tandem_Repeat 5384 5535 154 + . . scaffold473 GLEAN mRNA 7817 7875 0.999999 + . ID=CGI_10010578; scaffold473 TRF Tandem_Repeat 7817 7875 82 + . . scaffold473 GLEAN mRNA 81599 81829 0.638848 - . ID=CGI_10010580; scaffold473 TRF Tandem_Repeat 81599 81829 419 + . . scaffold473 GLEAN mRNA 101700 101749 0.614469 - . ID=CGI_10010581; scaffold473 TRF Tandem_Repeat 101700 101749 100 + . . scaffold473 GLEAN mRNA 116024 116069 1 + . ID=CGI_10010582; scaffold473 TRF Tandem_Repeat 116024 116069 83 + . . scaffold473 GLEAN mRNA 213263 213289 0.245263 + . ID=CGI_10010589; scaffold473 TRF Tandem_Repeat 213263 213289 54 + . . scaffold1186 GLEAN mRNA 40039 40097 0.978307 + . ID=CGI_10010592; scaffold1186 TRF Tandem_Repeat 40039 40097 109 + . . scaffold1186 GLEAN mRNA 73224 73261 0.584728 + . ID=CGI_10010593; scaffold1186 TRF Tandem_Repeat 73224 73261 58 + . . scaffold1186 GLEAN mRNA 70821 70979 0.584728 + . ID=CGI_10010593; scaffold1186 WUBlastX LINE_RTE-X 70821 70979 25 + . . scaffold1186 GLEAN mRNA 71752 71904 0.584728 + . ID=CGI_10010593; scaffold1186 WUBlastX LINE_RTE-X 71752 71904 40 + . . scaffold1186 GLEAN mRNA 70729 70809 0.584728 + . ID=CGI_10010593; scaffold1186 WUBlastX LINE_RTE-X 70729 70809 46 + . . scaffold1186 GLEAN mRNA 71791 71904 0.584728 + . ID=CGI_10010593; scaffold1186 WUBlastX LINE_RTE-X 71791 71904 45 + . . scaffold1186 GLEAN mRNA 87463 87529 0.584728 + . ID=CGI_10010593; scaffold1186 TRF Tandem_Repeat 87463 87529 71 + . . scaffold1186 GLEAN mRNA 90316 90361 0.584728 + . ID=CGI_10010593; scaffold1186 TRF Tandem_Repeat 90316 90361 65 + . . scaffold1186 GLEAN mRNA 184672 184812 1 - . ID=CGI_10010596; scaffold1186 WUBlastX DNA_IS4EU 184672 184812 31 - . . scaffold1186 GLEAN mRNA 210219 210271 0.578632 + . ID=CGI_10010597; scaffold1186 TRF Tandem_Repeat 210219 210271 97 + . . scaffold1186 GLEAN mRNA 212019 212528 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Gypsy 212019 212528 300 + . . scaffold1186 GLEAN mRNA 205638 206678 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Pao 205638 206678 956 + . . scaffold1186 GLEAN mRNA 200177 200539 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Pao 200177 200539 46 + . . scaffold1186 GLEAN mRNA 200612 202279 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Pao 200612 202279 968 + . . scaffold1186 GLEAN mRNA 203615 203848 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Pao 203615 203848 74 + . . scaffold1186 GLEAN mRNA 210646 210921 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Gypsy 210646 210921 64 + . . scaffold1186 GLEAN mRNA 203702 203848 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Pao 203702 203848 165 + . . scaffold1186 GLEAN mRNA 210574 210894 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Gypsy 210574 210894 36 + . . scaffold1186 GLEAN mRNA 212504 212761 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Gypsy 212504 212761 259 + . . scaffold1186 GLEAN mRNA 203675 203848 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Pao 203675 203848 111 + . . scaffold1186 GLEAN mRNA 203845 205638 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Pao 203845 205638 1384 + . . scaffold1186 GLEAN mRNA 200264 202597 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Pao 200264 202597 735 + . . scaffold1186 GLEAN mRNA 210694 210909 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Gypsy 210694 210909 64 + . . scaffold1186 GLEAN mRNA 210954 212435 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Gypsy 210954 212435 377 + . . scaffold1186 GLEAN mRNA 217534 217572 0.578632 + . ID=CGI_10010597; scaffold1186 TRF Tandem_Repeat 217534 217572 51 + . . scaffold1186 GLEAN mRNA 221602 221656 0.578632 + . ID=CGI_10010597; scaffold1186 TRF Tandem_Repeat 221602 221656 110 + . . scaffold1186 GLEAN mRNA 212758 214686 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Gypsy 212758 214686 444 + . . scaffold1186 GLEAN mRNA 225105 225163 0.351511 - . ID=CGI_10010599; scaffold1186 TRF Tandem_Repeat 225105 225163 118 + . . scaffold1186 GLEAN mRNA 238333 238812 0.351511 - . ID=CGI_10010599; scaffold1186 WUBlastX LINE_L1-Tx1 238333 238812 21 + . . scaffold1186 GLEAN mRNA 243345 243824 0.351511 - . ID=CGI_10010599; scaffold1186 WUBlastX DNA_Crypton 243345 243824 173 - . . scaffold1186 GLEAN mRNA 240392 240832 0.351511 - . ID=CGI_10010599; scaffold1186 WUBlastX LINE_Penelope 240392 240832 93 + . . scaffold1186 GLEAN mRNA 236970 237062 0.351511 - . ID=CGI_10010599; scaffold1186 WUBlastX LINE_L1-Tx1 236970 237062 25 + . . scaffold1186 GLEAN mRNA 240991 241101 0.351511 - . ID=CGI_10010599; scaffold1186 WUBlastX LINE_Penelope 240991 241101 42 + . . scaffold1186 GLEAN mRNA 240395 240985 0.351511 - . ID=CGI_10010599; scaffold1186 WUBlastX LINE_Penelope 240395 240985 55 + . . scaffold1186 GLEAN mRNA 243848 244318 0.351511 - . ID=CGI_10010599; scaffold1186 WUBlastX DNA_Crypton 243848 244318 69 - . . scaffold1186 GLEAN mRNA 237198 238337 0.351511 - . ID=CGI_10010599; scaffold1186 WUBlastX LINE_L1-Tx1 237198 238337 319 + . . scaffold1186 GLEAN mRNA 237724 238560 0.351511 - . ID=CGI_10010599; scaffold1186 WUBlastX LINE_L1 237724 238560 78 + . . scaffold1186 GLEAN mRNA 236770 236877 0.351511 - . ID=CGI_10010599; scaffold1186 WUBlastX LINE_L1 236770 236877 39 + . . scaffold1186 GLEAN mRNA 236779 236850 0.351511 - . ID=CGI_10010599; scaffold1186 WUBlastX LINE_L1-Tx1 236779 236850 44 + . . scaffold1609 GLEAN mRNA 134789 134866 0.999998 + . ID=CGI_10010601; scaffold1609 TRF Tandem_Repeat 134789 134866 70 + . . scaffold1609 GLEAN mRNA 134984 135025 0.999998 + . ID=CGI_10010601; scaffold1609 TRF Tandem_Repeat 134984 135025 84 + . . scaffold1609 GLEAN mRNA 135827 135860 0.999998 + . ID=CGI_10010601; scaffold1609 TRF Tandem_Repeat 135827 135860 59 + . . scaffold1609 GLEAN mRNA 135812 135860 0.999998 + . ID=CGI_10010601; scaffold1609 TRF Tandem_Repeat 135812 135860 55 + . . scaffold1609 GLEAN mRNA 151814 151860 0.83514 - . ID=CGI_10010602; scaffold1609 TRF Tandem_Repeat 151814 151860 94 + . . scaffold1609 GLEAN mRNA 153764 153834 0.83514 - . ID=CGI_10010602; scaffold1609 TRF Tandem_Repeat 153764 153834 135 + . . scaffold1609 GLEAN mRNA 159184 161556 0.83514 - . ID=CGI_10010602; scaffold1609 WUBlastX LTR_Gypsy 159184 161556 995 + . . scaffold1609 GLEAN mRNA 158513 159157 0.83514 - . ID=CGI_10010602; scaffold1609 WUBlastX LTR_Gypsy 158513 159157 515 + . . scaffold1609 GLEAN mRNA 159151 160602 0.83514 - . ID=CGI_10010602; scaffold1609 WUBlastX LTR_Gypsy 159151 160602 1370 + . . scaffold1609 GLEAN mRNA 160942 161712 0.83514 - . ID=CGI_10010602; scaffold1609 WUBlastX LTR_Gypsy 160942 161712 425 + . . scaffold1609 GLEAN mRNA 260656 260836 0.836758 + . ID=CGI_10010609; scaffold1609 TRF Tandem_Repeat 260656 260836 107 + . . scaffold43500 GLEAN mRNA 11772 11828 0.430579 - . ID=CGI_10010612; scaffold43500 TRF Tandem_Repeat 11772 11828 114 + . . scaffold43500 GLEAN mRNA 12492 12553 0.430579 - . ID=CGI_10010612; scaffold43500 TRF Tandem_Repeat 12492 12553 124 + . . scaffold43500 GLEAN mRNA 71688 71735 0.830032 - . ID=CGI_10010614; scaffold43500 WUBlastX LINE_L1 71688 71735 20 - . . scaffold43500 GLEAN mRNA 70732 71493 0.830032 - . ID=CGI_10010614; scaffold43500 WUBlastX LINE_RTE-X 70732 71493 213 - . . scaffold43500 GLEAN mRNA 69625 70383 0.830032 - . ID=CGI_10010614; scaffold43500 WUBlastX LINE_RTE-X 69625 70383 169 - . . scaffold43500 GLEAN mRNA 70600 71295 0.830032 - . ID=CGI_10010614; scaffold43500 WUBlastX LINE_RTE-X 70600 71295 234 - . . scaffold43500 GLEAN mRNA 69748 70518 0.830032 - . ID=CGI_10010614; scaffold43500 WUBlastX LINE_RTE-X 69748 70518 431 - . . scaffold43500 GLEAN mRNA 70524 70721 0.830032 - . ID=CGI_10010614; scaffold43500 WUBlastX LINE_RTE-X 70524 70721 127 - . . scaffold43500 GLEAN mRNA 70729 71244 0.830032 - . ID=CGI_10010614; scaffold43500 WUBlastX LINE_RTE-X 70729 71244 361 - . . scaffold43500 GLEAN mRNA 70744 71640 0.830032 - . ID=CGI_10010614; scaffold43500 WUBlastX LINE_L1 70744 71640 22 - . . scaffold43500 GLEAN mRNA 139719 139952 0.7334 + . ID=CGI_10010618; scaffold43500 WUBlastX LINE_CR1 139281 139952 91 + . . scaffold43500 GLEAN mRNA 191357 191587 0.591229 + . ID=CGI_10010622; scaffold43500 TRF Tandem_Repeat 191357 191587 390 + . . scaffold43500 GLEAN mRNA 193478 193573 0.591229 + . ID=CGI_10010622; scaffold43500 TRF Tandem_Repeat 193478 193573 131 + . . scaffold43500 GLEAN mRNA 193478 193573 0.591229 + . ID=CGI_10010622; scaffold43500 TRF Tandem_Repeat 193478 193573 120 + . . scaffold43500 GLEAN mRNA 217687 217883 0.591229 + . ID=CGI_10010622; scaffold43500 TRF Tandem_Repeat 217687 217883 154 + . . scaffold43500 GLEAN mRNA 224574 224809 0.591229 + . ID=CGI_10010622; scaffold43500 TRF Tandem_Repeat 224574 224809 214 + . . scaffold43500 GLEAN mRNA 224809 224852 0.591229 + . ID=CGI_10010622; scaffold43500 TRF Tandem_Repeat 224809 224852 61 + . . scaffold43500 GLEAN mRNA 249125 249379 0.999676 + . ID=CGI_10010625; scaffold43500 TRF Tandem_Repeat 249125 249379 402 + . . scaffold1569 GLEAN mRNA 24499 24996 0.999235 - . ID=CGI_10010628; scaffold1569 TRF Tandem_Repeat 24499 24996 690 + . . scaffold1569 GLEAN mRNA 24502 24616 0.999235 - . ID=CGI_10010628; scaffold1569 TRF Tandem_Repeat 24502 24616 179 + . . scaffold1569 GLEAN mRNA 24499 24996 0.999235 - . ID=CGI_10010628; scaffold1569 TRF Tandem_Repeat 24499 24996 736 + . . scaffold1569 GLEAN mRNA 32322 32390 0.365913 - . ID=CGI_10010629; scaffold1569 TRF Tandem_Repeat 32322 32390 138 + . . scaffold1569 GLEAN mRNA 56387 56414 1 - . ID=CGI_10010631; scaffold1569 TRF Tandem_Repeat 56387 56414 56 + . . scaffold1569 GLEAN mRNA 78842 78893 0.999985 + . ID=CGI_10010632; scaffold1569 TRF Tandem_Repeat 78842 78893 68 + . . scaffold1569 GLEAN mRNA 95924 96051 0.999898 + . ID=CGI_10010634; scaffold1569 TRF Tandem_Repeat 95924 96051 127 + . . scaffold1569 GLEAN mRNA 95924 96047 0.999898 + . ID=CGI_10010634; scaffold1569 TRF Tandem_Repeat 95924 96047 185 + . . scaffold1569 GLEAN mRNA 102499 102592 0.999898 + . ID=CGI_10010634; scaffold1569 TRF Tandem_Repeat 102499 102592 61 + . . scaffold1569 GLEAN mRNA 104831 104857 0.999898 + . ID=CGI_10010634; scaffold1569 TRF Tandem_Repeat 104831 104857 54 + . . scaffold1569 GLEAN mRNA 119563 119630 1 - . ID=CGI_10010635; scaffold1569 TRF Tandem_Repeat 119563 119630 127 + . . scaffold1569 GLEAN mRNA 120677 120790 1 - . ID=CGI_10010635; scaffold1569 TRF Tandem_Repeat 120677 120790 137 + . . scaffold1569 GLEAN mRNA 125300 125976 0.551199 - . ID=CGI_10010636; scaffold1569 TRF Tandem_Repeat 125300 125976 1052 + . . scaffold1569 GLEAN mRNA 130563 130595 0.999949 + . ID=CGI_10010637; scaffold1569 TRF Tandem_Repeat 130563 130595 57 + . . scaffold1569 GLEAN mRNA 144129 144170 0.999949 + . ID=CGI_10010637; scaffold1569 TRF Tandem_Repeat 144129 144170 77 + . . scaffold1569 GLEAN mRNA 144129 144170 1 - . ID=CGI_10010639; scaffold1569 TRF Tandem_Repeat 144129 144170 77 + . . scaffold1569 GLEAN mRNA 163860 164086 0.999179 - . ID=CGI_10010640; scaffold1569 TRF Tandem_Repeat 163860 164086 206 + . . scaffold1569 GLEAN mRNA 166980 167048 0.999179 - . ID=CGI_10010640; scaffold1569 TRF Tandem_Repeat 166980 167048 104 + . . scaffold1569 GLEAN mRNA 171315 171364 0.999179 - . ID=CGI_10010640; scaffold1569 TRF Tandem_Repeat 171315 171364 100 + . . scaffold1569 GLEAN mRNA 179139 179179 0.999179 - . ID=CGI_10010640; scaffold1569 TRF Tandem_Repeat 179139 179179 82 + . . scaffold1569 GLEAN mRNA 186985 187821 0.999179 - . ID=CGI_10010640; scaffold1569 TRF Tandem_Repeat 186985 187821 1219 + . . scaffold1569 GLEAN mRNA 187990 188032 0.999179 - . ID=CGI_10010640; scaffold1569 TRF Tandem_Repeat 187990 188032 54 + . . scaffold1569 GLEAN mRNA 192075 192105 0.999179 - . ID=CGI_10010640; scaffold1569 TRF Tandem_Repeat 192075 192105 53 + . . scaffold1569 GLEAN mRNA 192813 193772 0.999179 - . ID=CGI_10010640; scaffold1569 TRF Tandem_Repeat 192813 193772 1291 + . . scaffold1569 GLEAN mRNA 163810 164080 0.999179 - . ID=CGI_10010640; scaffold1569 TRF Tandem_Repeat 163810 164080 200 + . . scaffold1569 GLEAN mRNA 220720 220999 0.99923 - . ID=CGI_10010641; scaffold1569 TRF Tandem_Repeat 220720 220999 389 + . . scaffold1569 GLEAN mRNA 227892 228082 0.995609 + . ID=CGI_10010642; scaffold1569 TRF Tandem_Repeat 227892 228082 145 + . . scaffold1569 GLEAN mRNA 231626 231660 0.382692 + . ID=CGI_10010643; scaffold1569 TRF Tandem_Repeat 231626 231660 52 + . . scaffold1569 GLEAN mRNA 231618 231663 0.382692 + . ID=CGI_10010643; scaffold1569 TRF Tandem_Repeat 231618 231663 65 + . . scaffold1569 GLEAN mRNA 233089 233774 0.382692 + . ID=CGI_10010643; scaffold1569 TRF Tandem_Repeat 233089 233774 1029 + . . scaffold1127 GLEAN mRNA 1489 1707 0.494799 - . ID=CGI_10010645; scaffold1127 TRF Tandem_Repeat 1489 1707 213 + . . scaffold1127 GLEAN mRNA 9342 9393 0.494799 - . ID=CGI_10010645; scaffold1127 TRF Tandem_Repeat 9342 9393 95 + . . scaffold1127 GLEAN mRNA 12582 12635 0.494799 - . ID=CGI_10010645; scaffold1127 TRF Tandem_Repeat 12582 12635 78 + . . scaffold1127 GLEAN mRNA 14852 14899 0.494799 - . ID=CGI_10010645; scaffold1127 TRF Tandem_Repeat 14852 14899 96 + . . scaffold1127 GLEAN mRNA 5987 6322 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1 5987 6322 73 - . . scaffold1127 GLEAN mRNA 6005 6250 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1-Tx1 6005 6250 111 - . . scaffold1127 GLEAN mRNA 18105 18785 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1-Tx1 18105 18785 323 - . . scaffold1127 GLEAN mRNA 18788 19771 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1-Tx1 18788 19771 639 - . . scaffold1127 GLEAN mRNA 19807 20025 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1-Tx1 19807 20025 78 - . . scaffold1127 GLEAN mRNA 19819 20079 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1-Tx1 19819 20079 53 - . . scaffold1127 GLEAN mRNA 20076 20132 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1 20076 20132 24 - . . scaffold1127 GLEAN mRNA 19774 19947 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1-Tx1 19774 19947 44 - . . scaffold1127 GLEAN mRNA 16890 17261 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1-Tx1 16890 17261 88 - . . scaffold1127 GLEAN mRNA 17258 17716 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1-Tx1 17258 17716 57 - . . scaffold1127 GLEAN mRNA 17710 18129 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX LINE_L1 17710 18129 42 - . . scaffold1127 GLEAN mRNA 58319 58403 0.992544 + . ID=CGI_10010649; scaffold1127 TRF Tandem_Repeat 58319 58403 62 + . . scaffold1127 GLEAN mRNA 71716 71982 0.992544 + . ID=CGI_10010649; scaffold1127 TRF Tandem_Repeat 71716 71982 444 + . . scaffold1127 GLEAN mRNA 99763 99797 0.992544 + . ID=CGI_10010649; scaffold1127 TRF Tandem_Repeat 99763 99797 61 + . . scaffold1127 GLEAN mRNA 139254 139287 1 - . ID=CGI_10010652; scaffold1127 TRF Tandem_Repeat 139254 139287 68 + . . scaffold1127 GLEAN mRNA 139342 139517 1 - . ID=CGI_10010652; scaffold1127 TRF Tandem_Repeat 139342 139517 187 + . . scaffold1127 GLEAN mRNA 139267 139517 1 - . ID=CGI_10010652; scaffold1127 TRF Tandem_Repeat 139267 139517 179 + . . scaffold1127 GLEAN mRNA 153757 153829 0.999897 - . ID=CGI_10010653; scaffold1127 TRF Tandem_Repeat 153757 153829 78 + . . scaffold1127 GLEAN mRNA 153759 153829 0.999897 - . ID=CGI_10010653; scaffold1127 TRF Tandem_Repeat 153759 153829 60 + . . scaffold1127 GLEAN mRNA 153732 153809 0.999897 - . ID=CGI_10010653; scaffold1127 TRF Tandem_Repeat 153732 153809 50 + . . scaffold1127 GLEAN mRNA 153762 153820 0.999897 - . ID=CGI_10010653; scaffold1127 TRF Tandem_Repeat 153762 153820 63 + . . scaffold1127 GLEAN mRNA 157708 157768 0.999897 - . ID=CGI_10010653; scaffold1127 TRF Tandem_Repeat 157708 157768 122 + . . scaffold1127 GLEAN mRNA 159659 159714 0.999897 - . ID=CGI_10010653; scaffold1127 TRF Tandem_Repeat 159659 159714 112 + . . scaffold1127 GLEAN mRNA 164485 164541 0.999897 - . ID=CGI_10010653; scaffold1127 TRF Tandem_Repeat 164485 164541 114 + . . scaffold1127 GLEAN mRNA 166000 166147 0.999897 - . ID=CGI_10010653; scaffold1127 TRF Tandem_Repeat 166000 166147 67 + . . scaffold1127 GLEAN mRNA 166005 166167 0.999897 - . ID=CGI_10010653; scaffold1127 TRF Tandem_Repeat 166005 166167 120 + . . scaffold1127 GLEAN mRNA 166082 166139 0.999897 - . ID=CGI_10010653; scaffold1127 TRF Tandem_Repeat 166082 166139 50 + . . scaffold1127 GLEAN mRNA 166007 166147 0.999897 - . ID=CGI_10010653; scaffold1127 TRF Tandem_Repeat 166007 166147 91 + . . scaffold1127 GLEAN mRNA 170262 170303 1 - . ID=CGI_10010654; scaffold1127 TRF Tandem_Repeat 170262 170303 84 + . . scaffold1127 GLEAN mRNA 225387 225424 0.592806 - . ID=CGI_10010655; scaffold1127 TRF Tandem_Repeat 225387 225424 76 + . . scaffold1127 GLEAN mRNA 227502 227530 0.592806 - . ID=CGI_10010655; scaffold1127 TRF Tandem_Repeat 227502 227530 58 + . . scaffold1127 GLEAN mRNA 228150 228272 0.592806 - . ID=CGI_10010655; scaffold1127 TRF Tandem_Repeat 228150 228272 237 + . . scaffold1127 GLEAN mRNA 228154 228266 0.592806 - . ID=CGI_10010655; scaffold1127 TRF Tandem_Repeat 228154 228266 100 + . . scaffold1127 GLEAN mRNA 235422 235466 0.999949 + . ID=CGI_10010656; scaffold1127 TRF Tandem_Repeat 235422 235466 54 + . . scaffold1127 GLEAN mRNA 245839 245892 0.999949 + . ID=CGI_10010656; scaffold1127 WUBlastX LTR_Copia 245839 245892 24 + . . scaffold1127 GLEAN mRNA 262284 262478 0.834068 - . ID=CGI_10010657; scaffold1127 WUBlastX LTR_Pao 262284 262478 48 - . . scaffold1321 GLEAN mRNA 24499 24906 0.377682 - . ID=CGI_10010658; scaffold1321 TRF Tandem_Repeat 24499 24906 640 + . . scaffold1321 GLEAN mRNA 32045 32145 0.377682 - . ID=CGI_10010658; scaffold1321 TRF Tandem_Repeat 32045 32145 166 + . . scaffold1321 GLEAN mRNA 32045 32145 0.377682 - . ID=CGI_10010658; scaffold1321 TRF Tandem_Repeat 32045 32145 177 + . . scaffold1321 GLEAN mRNA 32211 32266 0.377682 - . ID=CGI_10010658; scaffold1321 TRF Tandem_Repeat 32211 32266 51 + . . scaffold1321 GLEAN mRNA 33531 33593 0.377682 - . ID=CGI_10010658; scaffold1321 TRF Tandem_Repeat 33531 33593 108 + . . scaffold1321 GLEAN mRNA 50140 50184 0.377682 - . ID=CGI_10010658; scaffold1321 TRF Tandem_Repeat 50140 50184 58 + . . scaffold1321 GLEAN mRNA 32045 32145 0.648346 + . ID=CGI_10010659; scaffold1321 TRF Tandem_Repeat 32045 32145 166 + . . scaffold1321 GLEAN mRNA 32045 32145 0.648346 + . ID=CGI_10010659; scaffold1321 TRF Tandem_Repeat 32045 32145 177 + . . scaffold1321 GLEAN mRNA 32211 32266 0.648346 + . ID=CGI_10010659; scaffold1321 TRF Tandem_Repeat 32211 32266 51 + . . scaffold1321 GLEAN mRNA 33531 33593 0.648346 + . ID=CGI_10010659; scaffold1321 TRF Tandem_Repeat 33531 33593 108 + . . scaffold1321 GLEAN mRNA 124920 125093 0.986166 - . ID=CGI_10010661; scaffold1321 WUBlastX DNA_Harbinger 124920 125093 56 - . . scaffold1321 GLEAN mRNA 129814 130011 0.986166 - . ID=CGI_10010661; scaffold1321 WUBlastX LTR_Gypsy 129814 130011 29 - . . scaffold1321 GLEAN mRNA 129490 129996 0.986166 - . ID=CGI_10010661; scaffold1321 WUBlastX LTR_Gypsy 129490 129996 25 - . . scaffold1321 GLEAN mRNA 136803 137201 1 - . ID=CGI_10010662; scaffold1321 WUBlastX LTR_DIRS 136803 137267 205 - . . scaffold1321 GLEAN mRNA 136608 136689 1 - . ID=CGI_10010662; scaffold1321 WUBlastX LTR_Gypsy 136522 136689 45 - . . scaffold1321 GLEAN mRNA 136624 136761 1 - . ID=CGI_10010662; scaffold1321 WUBlastX LTR_Copia 136624 136761 41 - . . scaffold1321 GLEAN mRNA 151229 151262 0.544485 + . ID=CGI_10010664; scaffold1321 TRF Tandem_Repeat 151229 151262 68 + . . scaffold1321 GLEAN mRNA 152001 152074 0.544485 + . ID=CGI_10010664; scaffold1321 TRF Tandem_Repeat 152001 152074 51 + . . scaffold1321 GLEAN mRNA 151918 152104 0.544485 + . ID=CGI_10010664; scaffold1321 TRF Tandem_Repeat 151918 152104 141 + . . scaffold1321 GLEAN mRNA 155253 155403 0.544485 + . ID=CGI_10010664; scaffold1321 TRF Tandem_Repeat 155253 155403 126 + . . scaffold1321 GLEAN mRNA 160975 161472 0.544485 + . ID=CGI_10010664; scaffold1321 WUBlastX LTR_Gypsy 160975 161472 161 - . . scaffold1321 GLEAN mRNA 160312 161376 0.544485 + . ID=CGI_10010664; scaffold1321 WUBlastX LTR_Gypsy 160312 161376 736 - . . scaffold1321 GLEAN mRNA 160285 160395 0.544485 + . ID=CGI_10010664; scaffold1321 WUBlastX LTR_Gypsy 160285 160395 32 - . . scaffold1321 GLEAN mRNA 161592 161657 0.544485 + . ID=CGI_10010664; scaffold1321 WUBlastX LTR_Gypsy 161592 161657 34 - . . scaffold1608 GLEAN mRNA 14081 14107 0.999351 + . ID=CGI_10010667; scaffold1608 TRF Tandem_Repeat 14081 14107 54 + . . scaffold1608 GLEAN mRNA 20829 20889 0.999351 + . ID=CGI_10010667; scaffold1608 TRF Tandem_Repeat 20829 20889 86 + . . scaffold1608 GLEAN mRNA 20829 20892 0.999351 + . ID=CGI_10010667; scaffold1608 TRF Tandem_Repeat 20829 20892 65 + . . scaffold1608 GLEAN mRNA 20831 20889 0.999351 + . ID=CGI_10010667; scaffold1608 TRF Tandem_Repeat 20831 20889 100 + . . scaffold1608 GLEAN mRNA 64069 64094 1 - . ID=CGI_10010674; scaffold1608 TRF Tandem_Repeat 64069 64094 52 + . . scaffold1608 GLEAN mRNA 79189 79213 1 + . ID=CGI_10010676; scaffold1608 TRF Tandem_Repeat 79189 79213 50 + . . scaffold1608 GLEAN mRNA 80217 80241 1 + . ID=CGI_10010676; scaffold1608 TRF Tandem_Repeat 80217 80241 50 + . . scaffold1608 GLEAN mRNA 109120 109189 0.737683 + . ID=CGI_10010678; scaffold1608 TRF Tandem_Repeat 109120 109189 140 + . . scaffold1608 GLEAN mRNA 112246 112288 0.737683 + . ID=CGI_10010678; scaffold1608 TRF Tandem_Repeat 112246 112288 86 + . . scaffold1608 GLEAN mRNA 126643 127548 0.737683 + . ID=CGI_10010678; scaffold1608 TRF Tandem_Repeat 126643 127548 1525 + . . scaffold1608 GLEAN mRNA 127855 127955 0.737683 + . ID=CGI_10010678; scaffold1608 TRF Tandem_Repeat 127855 127955 66 + . . scaffold1608 GLEAN mRNA 128757 128855 0.737683 + . ID=CGI_10010678; scaffold1608 TRF Tandem_Repeat 128757 128855 55 + . . scaffold1608 GLEAN mRNA 134350 134457 0.737683 + . ID=CGI_10010678; scaffold1608 WUBlastX LTR_Gypsy 134350 134457 20 + . . scaffold1608 GLEAN mRNA 181966 182093 1 + . ID=CGI_10010681; scaffold1608 TRF Tandem_Repeat 181966 182093 247 + . . scaffold1608 GLEAN mRNA 253864 254352 1 - . ID=CGI_10010686; scaffold1608 TRF Tandem_Repeat 253864 254352 513 + . . scaffold1608 GLEAN mRNA 254064 254352 1 - . ID=CGI_10010686; scaffold1608 TRF Tandem_Repeat 254064 254352 245 + . . scaffold1608 GLEAN mRNA 253892 254352 1 - . ID=CGI_10010686; scaffold1608 TRF Tandem_Repeat 253892 254352 592 + . . scaffold1449 GLEAN mRNA 51700 51921 0.806919 - . ID=CGI_10010690; scaffold1449 WUBlastX DNA_TcMar-Tc1 51700 51921 97 - . . scaffold1449 GLEAN mRNA 51682 51963 0.806919 - . ID=CGI_10010690; scaffold1449 WUBlastX DNA_TcMar-Tc1 51682 51963 59 - . . scaffold1449 GLEAN mRNA 51718 52119 0.806919 - . ID=CGI_10010690; scaffold1449 WUBlastX DNA_TcMar-Tc1 51718 52119 23 - . . scaffold1449 GLEAN mRNA 75560 75606 0.84051 + . ID=CGI_10010691; scaffold1449 TRF Tandem_Repeat 75560 75606 67 + . . scaffold1449 GLEAN mRNA 73191 73343 0.84051 + . ID=CGI_10010691; scaffold1449 WUBlastX DNA_TcMar-Marin 73191 73343 35 - . . scaffold1449 GLEAN mRNA 72966 73313 0.84051 + . ID=CGI_10010691; scaffold1449 WUBlastX DNA_TcMar-Tc1 72966 73313 55 - . . scaffold1449 GLEAN mRNA 72301 72957 0.84051 + . ID=CGI_10010691; scaffold1449 WUBlastX DNA_TcMar-Tc1 72301 72957 387 - . . scaffold1449 GLEAN mRNA 73062 73295 0.84051 + . ID=CGI_10010691; scaffold1449 WUBlastX DNA_TcMar-Tc1 73062 73295 78 - . . scaffold1449 GLEAN mRNA 184216 184293 0.821744 - . ID=CGI_10010695; scaffold1449 TRF Tandem_Repeat 184216 184293 111 + . . scaffold1449 GLEAN mRNA 184216 184293 0.821744 - . ID=CGI_10010695; scaffold1449 TRF Tandem_Repeat 184216 184293 138 + . . scaffold1449 GLEAN mRNA 185118 185175 0.821744 - . ID=CGI_10010695; scaffold1449 TRF Tandem_Repeat 185118 185175 107 + . . scaffold1449 GLEAN mRNA 186476 186537 0.821744 - . ID=CGI_10010695; scaffold1449 TRF Tandem_Repeat 186476 186537 79 + . . scaffold1449 GLEAN mRNA 186471 186538 0.821744 - . ID=CGI_10010695; scaffold1449 TRF Tandem_Repeat 186471 186538 91 + . . scaffold1449 GLEAN mRNA 203791 204075 0.776794 + . ID=CGI_10010696; scaffold1449 WUBlastX DNA_Kolobok-Hyd 203488 204075 52 + . . scaffold592 GLEAN mRNA 14461 14495 0.499918 + . ID=CGI_10010700; scaffold592 TRF Tandem_Repeat 14461 14495 70 + . . scaffold592 GLEAN mRNA 18749 18910 0.499918 + . ID=CGI_10010700; scaffold592 WUBlastX DNA_Academ 18749 18910 27 + . . scaffold592 GLEAN mRNA 18815 18910 0.499918 + . ID=CGI_10010700; scaffold592 WUBlastX DNA_Academ 18815 18910 38 + . . scaffold592 GLEAN mRNA 18912 19316 0.499918 + . ID=CGI_10010700; scaffold592 WUBlastX DNA_Academ 18912 19343 68 + . . scaffold592 GLEAN mRNA 85371 85404 0.77896 - . ID=CGI_10010703; scaffold592 TRF Tandem_Repeat 85371 85404 52 + . . scaffold592 GLEAN mRNA 123893 123969 0.728285 + . ID=CGI_10010705; scaffold592 TRF Tandem_Repeat 123893 123969 59 + . . scaffold592 GLEAN mRNA 145645 145978 0.993189 + . ID=CGI_10010706; scaffold592 TRF Tandem_Repeat 145645 145978 123 + . . scaffold592 GLEAN mRNA 145665 145856 0.993189 + . ID=CGI_10010706; scaffold592 TRF Tandem_Repeat 145665 145856 194 + . . scaffold592 GLEAN mRNA 151247 151306 0.993189 + . ID=CGI_10010706; scaffold592 TRF Tandem_Repeat 151247 151306 113 + . . scaffold592 GLEAN mRNA 155385 155427 0.993189 + . ID=CGI_10010706; scaffold592 TRF Tandem_Repeat 155385 155427 86 + . . scaffold592 GLEAN mRNA 160206 160287 0.993189 + . ID=CGI_10010706; scaffold592 TRF Tandem_Repeat 160206 160287 157 + . . scaffold592 GLEAN mRNA 172147 172171 0.993189 + . ID=CGI_10010706; scaffold592 TRF Tandem_Repeat 172147 172171 50 + . . scaffold592 GLEAN mRNA 172382 172568 0.993189 + . ID=CGI_10010706; scaffold592 TRF Tandem_Repeat 172382 172568 189 + . . scaffold592 GLEAN mRNA 191884 191909 0.802597 - . ID=CGI_10010707; scaffold592 TRF Tandem_Repeat 191884 191909 52 + . . scaffold592 GLEAN mRNA 192651 192728 0.802597 - . ID=CGI_10010707; scaffold592 TRF Tandem_Repeat 192651 192728 156 + . . scaffold592 GLEAN mRNA 197958 197992 0.802597 - . ID=CGI_10010707; scaffold592 TRF Tandem_Repeat 197958 197992 70 + . . scaffold592 GLEAN mRNA 209991 210097 0.685514 - . ID=CGI_10010708; scaffold592 TRF Tandem_Repeat 209991 210097 142 + . . scaffold592 GLEAN mRNA 211705 211850 0.685514 - . ID=CGI_10010708; scaffold592 TRF Tandem_Repeat 211705 211850 103 + . . scaffold592 GLEAN mRNA 211760 211850 0.685514 - . ID=CGI_10010708; scaffold592 TRF Tandem_Repeat 211760 211850 146 + . . scaffold592 GLEAN mRNA 222272 222895 0.685514 - . ID=CGI_10010708; scaffold592 TRF Tandem_Repeat 222272 222895 586 + . . scaffold592 GLEAN mRNA 228786 229128 0.685514 - . ID=CGI_10010708; scaffold592 TRF Tandem_Repeat 228786 229128 686 + . . scaffold592 GLEAN mRNA 255208 255520 0.999074 + . ID=CGI_10010709; scaffold592 TRF Tandem_Repeat 255208 255520 433 + . . scaffold592 GLEAN mRNA 265480 265512 1 + . ID=CGI_10010710; scaffold592 TRF Tandem_Repeat 265480 265512 50 + . . scaffold592 GLEAN mRNA 265636 265677 1 + . ID=CGI_10010710; scaffold592 TRF Tandem_Repeat 265636 265677 84 + . . scaffold592 GLEAN mRNA 266280 266446 1 + . ID=CGI_10010710; scaffold592 TRF Tandem_Repeat 266280 266446 119 + . . scaffold592 GLEAN mRNA 266313 266471 1 + . ID=CGI_10010710; scaffold592 TRF Tandem_Repeat 266313 266471 112 + . . scaffold592 GLEAN mRNA 268358 268700 1 + . ID=CGI_10010710; scaffold592 TRF Tandem_Repeat 268358 268700 206 + . . scaffold592 GLEAN mRNA 268358 268960 1 + . ID=CGI_10010710; scaffold592 TRF Tandem_Repeat 268358 268960 412 + . . scaffold592 GLEAN mRNA 268358 268960 1 + . ID=CGI_10010710; scaffold592 TRF Tandem_Repeat 268358 268960 443 + . . scaffold592 GLEAN mRNA 268403 268885 1 + . ID=CGI_10010710; scaffold592 TRF Tandem_Repeat 268403 268885 166 + . . scaffold592 GLEAN mRNA 268738 268960 1 + . ID=CGI_10010710; scaffold592 TRF Tandem_Repeat 268738 268960 186 + . . scaffold43520 GLEAN mRNA 56297 56345 0.998884 + . ID=CGI_10010712; scaffold43520 TRF Tandem_Repeat 56297 56345 80 + . . scaffold43520 GLEAN mRNA 85114 85159 1 - . ID=CGI_10010714; scaffold43520 TRF Tandem_Repeat 85114 85159 83 + . . scaffold43520 GLEAN mRNA 91199 92007 1 - . ID=CGI_10010714; scaffold43520 TRF Tandem_Repeat 91199 92007 773 + . . scaffold43520 GLEAN mRNA 93453 93510 1 - . ID=CGI_10010714; scaffold43520 TRF Tandem_Repeat 93453 93510 91 + . . scaffold43520 GLEAN mRNA 104239 104277 0.544852 + . ID=CGI_10010716; scaffold43520 TRF Tandem_Repeat 104239 104277 62 + . . scaffold43520 GLEAN mRNA 144291 144317 0.999668 - . ID=CGI_10010718; scaffold43520 TRF Tandem_Repeat 144291 144317 54 + . . scaffold43520 GLEAN mRNA 185338 186297 0.796254 - . ID=CGI_10010721; scaffold43520 WUBlastX LTR_Ngaro 185338 186297 54 + . . scaffold43520 GLEAN mRNA 185629 186030 0.796254 - . ID=CGI_10010721; scaffold43520 WUBlastX LTR_Ngaro 185629 186030 66 + . . scaffold43520 GLEAN mRNA 188920 189144 0.796254 - . ID=CGI_10010721; scaffold43520 WUBlastX LINE_Penelope 188920 189144 59 + . . scaffold43520 GLEAN mRNA 211678 212159 0.796254 - . ID=CGI_10010721; scaffold43520 TRF Tandem_Repeat 211678 212159 721 + . . scaffold43520 GLEAN mRNA 240605 240657 1 - . ID=CGI_10010723; scaffold43520 TRF Tandem_Repeat 240605 240657 106 + . . scaffold43520 GLEAN mRNA 266457 266501 0.911795 - . ID=CGI_10010725; scaffold43520 TRF Tandem_Repeat 266457 266501 63 + . . scaffold43520 GLEAN mRNA 266574 266606 0.911795 - . ID=CGI_10010725; scaffold43520 TRF Tandem_Repeat 266574 266606 66 + . . scaffold43520 GLEAN mRNA 264476 264847 0.911795 - . ID=CGI_10010725; scaffold43520 WUBlastX DNA_Sola 264476 264847 122 + . . scaffold43530 GLEAN mRNA 31223 31883 0.995191 - . ID=CGI_10010727; scaffold43530 TRF Tandem_Repeat 31223 31883 848 + . . scaffold43530 GLEAN mRNA 44927 44957 0.995191 - . ID=CGI_10010727; scaffold43530 TRF Tandem_Repeat 44927 44957 62 + . . scaffold43530 GLEAN mRNA 47489 47567 0.995191 - . ID=CGI_10010727; scaffold43530 TRF Tandem_Repeat 47489 47567 71 + . . scaffold43530 GLEAN mRNA 47460 47498 0.995191 - . ID=CGI_10010727; scaffold43530 TRF Tandem_Repeat 47460 47498 78 + . . scaffold43530 GLEAN mRNA 51348 51400 0.995191 - . ID=CGI_10010727; scaffold43530 TRF Tandem_Repeat 51348 51400 106 + . . scaffold43530 GLEAN mRNA 52248 52305 0.995191 - . ID=CGI_10010727; scaffold43530 TRF Tandem_Repeat 52248 52305 109 + . . scaffold43530 GLEAN mRNA 100352 100402 0.25922 + . ID=CGI_10010728; scaffold43530 TRF Tandem_Repeat 100352 100402 84 + . . scaffold43530 GLEAN mRNA 105672 105726 0.25922 + . ID=CGI_10010728; scaffold43530 TRF Tandem_Repeat 105672 105726 103 + . . scaffold43530 GLEAN mRNA 106197 106461 0.25922 + . ID=CGI_10010728; scaffold43530 TRF Tandem_Repeat 106197 106461 219 + . . scaffold43530 GLEAN mRNA 106197 106434 0.25922 + . ID=CGI_10010728; scaffold43530 TRF Tandem_Repeat 106197 106434 307 + . . scaffold43530 GLEAN mRNA 107578 107606 0.25922 + . ID=CGI_10010728; scaffold43530 TRF Tandem_Repeat 107578 107606 58 + . . scaffold43530 GLEAN mRNA 118986 119016 1 - . ID=CGI_10010729; scaffold43530 TRF Tandem_Repeat 118986 119016 62 + . . scaffold43530 GLEAN mRNA 127183 127310 0.814164 + . ID=CGI_10010730; scaffold43530 TRF Tandem_Repeat 127183 127310 94 + . . scaffold43530 GLEAN mRNA 127232 127310 0.814164 + . ID=CGI_10010730; scaffold43530 TRF Tandem_Repeat 127232 127310 140 + . . scaffold43530 GLEAN mRNA 131590 131655 1 - . ID=CGI_10010731; scaffold43530 TRF Tandem_Repeat 131590 131655 132 + . . scaffold954 GLEAN mRNA 15051 15718 0.624015 + . ID=CGI_10010733; scaffold954 TRF Tandem_Repeat 15051 15718 910 + . . scaffold954 GLEAN mRNA 32187 32369 0.83496 + . ID=CGI_10010738; scaffold954 TRF Tandem_Repeat 32187 32369 252 + . . scaffold954 GLEAN mRNA 50341 50428 0.999998 - . ID=CGI_10010739; scaffold954 TRF Tandem_Repeat 50341 50428 151 + . . scaffold954 GLEAN mRNA 69458 69664 1 - . ID=CGI_10010740; scaffold954 TRF Tandem_Repeat 69458 69664 333 + . . scaffold954 GLEAN mRNA 99017 99064 0.648527 + . ID=CGI_10010743; scaffold954 TRF Tandem_Repeat 99017 99064 96 + . . scaffold954 GLEAN mRNA 183943 184182 0.57353 - . ID=CGI_10010744; scaffold954 WUBlastX DNA_Academ 183943 184917 397 - . . scaffold954 GLEAN mRNA 183919 184122 0.57353 - . ID=CGI_10010744; scaffold954 WUBlastX DNA_Academ 183841 184122 27 - . . scaffold954 GLEAN mRNA 226174 226278 0.904789 - . ID=CGI_10010745; scaffold954 TRF Tandem_Repeat 226174 226278 66 + . . scaffold954 GLEAN mRNA 226194 226297 0.904789 - . ID=CGI_10010745; scaffold954 TRF Tandem_Repeat 226194 226297 100 + . . scaffold954 GLEAN mRNA 221072 221437 0.904789 - . ID=CGI_10010745; scaffold954 WUBlastX LINE_RTE-X 221072 221437 38 - . . scaffold954 GLEAN mRNA 221010 221177 0.904789 - . ID=CGI_10010745; scaffold954 WUBlastX LINE_I 221010 221177 28 - . . scaffold954 GLEAN mRNA 221374 221484 0.904789 - . ID=CGI_10010745; scaffold954 WUBlastX LINE_RTE-X 221374 221484 20 - . . scaffold1546 GLEAN mRNA 54304 54446 0.999624 - . ID=CGI_10010750; scaffold1546 TRF Tandem_Repeat 54304 54446 259 + . . scaffold1546 GLEAN mRNA 72990 73036 0.99956 + . ID=CGI_10010751; scaffold1546 TRF Tandem_Repeat 72990 73036 60 + . . scaffold1546 GLEAN mRNA 72997 73047 0.99956 + . ID=CGI_10010751; scaffold1546 TRF Tandem_Repeat 72997 73047 57 + . . scaffold1546 GLEAN mRNA 73248 74175 0.99956 + . ID=CGI_10010751; scaffold1546 TRF Tandem_Repeat 73248 74175 1271 + . . scaffold1546 GLEAN mRNA 80335 80550 0.99956 + . ID=CGI_10010751; scaffold1546 TRF Tandem_Repeat 80335 80550 380 + . . scaffold1546 GLEAN mRNA 190968 191624 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Helitron 190968 191624 43 + . . scaffold1546 GLEAN mRNA 183480 183653 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 183480 183653 99 - . . scaffold1546 GLEAN mRNA 184117 184311 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 184117 184311 79 - . . scaffold1546 GLEAN mRNA 184533 184859 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 184533 184859 111 - . . scaffold1546 GLEAN mRNA 184894 184980 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 184894 184980 22 - . . scaffold1546 GLEAN mRNA 184078 184293 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 184078 184293 58 - . . scaffold1546 GLEAN mRNA 191073 191624 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX RC_Helitron 191073 191624 88 + . . scaffold1546 GLEAN mRNA 182221 182379 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 182209 182379 26 + . . scaffold1546 GLEAN mRNA 182524 182619 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 182524 182619 49 + . . scaffold1546 GLEAN mRNA 183507 183692 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 183507 183692 26 - . . scaffold1546 GLEAN mRNA 184454 184582 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 184454 184582 70 - . . scaffold1546 GLEAN mRNA 183719 184012 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 183719 184012 115 - . . scaffold1546 GLEAN mRNA 183219 183359 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 183219 183359 49 - . . scaffold1546 GLEAN mRNA 186408 186623 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_P 186408 186623 65 - . . scaffold1546 GLEAN mRNA 204976 205200 0.988067 + . ID=CGI_10010755; scaffold1546 TRF Tandem_Repeat 204976 205200 140 + . . scaffold1546 GLEAN mRNA 205048 205169 0.988067 + . ID=CGI_10010755; scaffold1546 TRF Tandem_Repeat 205048 205169 118 + . . scaffold1546 GLEAN mRNA 204536 204760 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_TcMar-Tc1 204536 204760 28 - . . scaffold1546 GLEAN mRNA 191706 197198 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX RC_Helitron 191706 197198 3201 + . . scaffold1546 GLEAN mRNA 196572 197321 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX LINE_L2 196572 197321 22 + . . scaffold1546 GLEAN mRNA 262370 262429 0.574717 - . ID=CGI_10010756; scaffold1546 TRF Tandem_Repeat 262370 262429 61 + . . scaffold1546 GLEAN mRNA 262370 262446 0.574717 - . ID=CGI_10010756; scaffold1546 TRF Tandem_Repeat 262370 262446 57 + . . scaffold1546 GLEAN mRNA 262370 262441 0.574717 - . ID=CGI_10010756; scaffold1546 TRF Tandem_Repeat 262370 262441 72 + . . scaffold1546 GLEAN mRNA 265071 265117 0.574717 - . ID=CGI_10010756; scaffold1546 TRF Tandem_Repeat 265071 265117 94 + . . scaffold1546 GLEAN mRNA 267066 267105 0.574717 - . ID=CGI_10010756; scaffold1546 TRF Tandem_Repeat 267066 267105 53 + . . scaffold1546 GLEAN mRNA 268624 269032 0.574717 - . ID=CGI_10010756; scaffold1546 TRF Tandem_Repeat 268624 269032 250 + . . scaffold252 GLEAN mRNA 633 1208 0.999996 - . ID=CGI_10010757; scaffold252 TRF Tandem_Repeat 633 1208 981 + . . scaffold252 GLEAN mRNA 29041 29222 0.99477 - . ID=CGI_10010758; scaffold252 TRF Tandem_Repeat 29041 29222 337 + . . scaffold252 GLEAN mRNA 33578 34105 0.99477 - . ID=CGI_10010758; scaffold252 TRF Tandem_Repeat 33578 34105 713 + . . scaffold252 GLEAN mRNA 52030 52189 0.779573 + . ID=CGI_10010759; scaffold252 TRF Tandem_Repeat 52030 52189 178 + . . scaffold252 GLEAN mRNA 52236 52430 0.779573 + . ID=CGI_10010759; scaffold252 TRF Tandem_Repeat 52236 52430 133 + . . scaffold252 GLEAN mRNA 52030 52344 0.779573 + . ID=CGI_10010759; scaffold252 TRF Tandem_Repeat 52030 52344 217 + . . scaffold252 GLEAN mRNA 55858 56004 0.779573 + . ID=CGI_10010759; scaffold252 TRF Tandem_Repeat 55858 56004 95 + . . scaffold252 GLEAN mRNA 55816 56698 0.779573 + . ID=CGI_10010759; scaffold252 TRF Tandem_Repeat 55816 56698 1397 + . . scaffold252 GLEAN mRNA 56102 56271 0.779573 + . ID=CGI_10010759; scaffold252 TRF Tandem_Repeat 56102 56271 114 + . . scaffold252 GLEAN mRNA 73099 73240 0.779573 + . ID=CGI_10010759; scaffold252 TRF Tandem_Repeat 73099 73240 176 + . . scaffold252 GLEAN mRNA 92011 92078 0.999676 + . ID=CGI_10010762; scaffold252 TRF Tandem_Repeat 92011 92078 68 + . . scaffold252 GLEAN mRNA 92735 92965 0.999676 + . ID=CGI_10010762; scaffold252 WUBlastX DNA_MuDR 92735 92965 33 - . . scaffold252 GLEAN mRNA 93123 93467 0.999676 + . ID=CGI_10010762; scaffold252 WUBlastX DNA_MuDR 93123 93467 101 - . . scaffold252 GLEAN mRNA 93225 93524 0.999676 + . ID=CGI_10010762; scaffold252 WUBlastX DNA_MuDR 93225 93524 56 - . . scaffold252 GLEAN mRNA 92735 92941 0.866433 - . ID=CGI_10010763; scaffold252 WUBlastX DNA_MuDR 92735 92965 33 - . . scaffold252 GLEAN mRNA 106392 106418 0.999858 - . ID=CGI_10010764; scaffold252 TRF Tandem_Repeat 106392 106418 54 + . . scaffold252 GLEAN mRNA 194729 194890 0.650781 - . ID=CGI_10010768; scaffold252 WUBlastX LINE_L1 194729 194890 66 + . . scaffold252 GLEAN mRNA 195000 195257 0.650781 - . ID=CGI_10010768; scaffold252 WUBlastX LINE_L1-Tx1 195000 195257 75 + . . scaffold252 GLEAN mRNA 194395 194766 0.650781 - . ID=CGI_10010768; scaffold252 WUBlastX LINE_L1-Tx1 194395 194766 93 + . . scaffold252 GLEAN mRNA 196213 196467 0.650781 - . ID=CGI_10010768; scaffold252 WUBlastX LINE_L1-Tx1 196213 196467 43 + . . scaffold252 GLEAN mRNA 194729 195025 0.650781 - . ID=CGI_10010768; scaffold252 WUBlastX LINE_L1-Tx1 194729 195025 62 + . . scaffold252 GLEAN mRNA 196962 197007 0.650781 - . ID=CGI_10010768; scaffold252 TRF Tandem_Repeat 196962 197007 92 + . . scaffold252 GLEAN mRNA 196469 196741 0.650781 - . ID=CGI_10010768; scaffold252 WUBlastX LINE_L1-Tx1 196469 196741 44 + . . scaffold252 GLEAN mRNA 228093 228335 1 - . ID=CGI_10010770; scaffold252 WUBlastX DNA_Kolobok-IS4 228072 228482 126 - . . scaffold252 GLEAN mRNA 271644 271751 0.973463 + . ID=CGI_10010771; scaffold252 WUBlastX LINE_L1-Tx1 271644 271751 42 - . . scaffold252 GLEAN mRNA 271892 272023 0.973463 + . ID=CGI_10010771; scaffold252 WUBlastX LINE_L1-Tx1 271892 272023 28 - . . scaffold759 GLEAN mRNA 34508 34536 0.999676 + . ID=CGI_10010773; scaffold759 TRF Tandem_Repeat 34508 34536 58 + . . scaffold759 GLEAN mRNA 38417 38636 0.999676 + . ID=CGI_10010773; scaffold759 TRF Tandem_Repeat 38417 38636 69 + . . scaffold759 GLEAN mRNA 101799 102596 0.957564 + . ID=CGI_10010775; scaffold759 WUBlastX LTR_Gypsy-Cigr 101799 102596 62 + . . scaffold759 GLEAN mRNA 101958 102632 0.957564 + . ID=CGI_10010775; scaffold759 WUBlastX LTR_Gypsy 101958 102632 68 + . . scaffold759 GLEAN mRNA 102138 102866 0.957564 + . ID=CGI_10010775; scaffold759 WUBlastX LTR_Gypsy 102138 102866 123 + . . scaffold759 GLEAN mRNA 224206 224250 0.999351 + . ID=CGI_10010779; scaffold759 TRF Tandem_Repeat 224206 224250 90 + . . scaffold759 GLEAN mRNA 212694 213293 0.999351 + . ID=CGI_10010779; scaffold759 TRF Tandem_Repeat 212694 213293 745 + . . scaffold759 GLEAN mRNA 212694 213293 0.448425 - . ID=CGI_10010780; scaffold759 TRF Tandem_Repeat 212694 213293 745 + . . scaffold759 GLEAN mRNA 245043 245088 0.998454 - . ID=CGI_10010781; scaffold759 TRF Tandem_Repeat 245043 245088 92 + . . scaffold759 GLEAN mRNA 246690 246743 0.998454 - . ID=CGI_10010781; scaffold759 TRF Tandem_Repeat 246690 246743 56 + . . scaffold759 GLEAN mRNA 250023 250060 0.998454 - . ID=CGI_10010781; scaffold759 TRF Tandem_Repeat 250023 250060 76 + . . scaffold759 GLEAN mRNA 251775 251826 0.998454 - . ID=CGI_10010781; scaffold759 TRF Tandem_Repeat 251775 251826 104 + . . scaffold759 GLEAN mRNA 247993 248406 0.998454 - . ID=CGI_10010781; scaffold759 WUBlastX LINE_RTE-X 247993 248406 131 - . . scaffold759 GLEAN mRNA 247867 248406 0.998454 - . ID=CGI_10010781; scaffold759 WUBlastX LINE_RTE-X 247867 248406 105 - . . scaffold43526 GLEAN mRNA 41788 41838 0.985699 + . ID=CGI_10010784; scaffold43526 TRF Tandem_Repeat 41788 41838 102 + . . scaffold43526 GLEAN mRNA 46655 46695 0.985699 + . ID=CGI_10010784; scaffold43526 TRF Tandem_Repeat 46655 46695 82 + . . scaffold43526 GLEAN mRNA 47840 47869 0.985699 + . ID=CGI_10010784; scaffold43526 TRF Tandem_Repeat 47840 47869 60 + . . scaffold43526 GLEAN mRNA 38414 38530 0.985699 + . ID=CGI_10010784; scaffold43526 WUBlastX LINE_RTE-X 38414 38530 38 + . . scaffold43526 GLEAN mRNA 42876 43286 0.985699 + . ID=CGI_10010784; scaffold43526 WUBlastX LINE_L1-Tx1 42876 43286 70 + . . scaffold43526 GLEAN mRNA 38453 38632 0.985699 + . ID=CGI_10010784; scaffold43526 WUBlastX LINE_RTE-X 38453 38632 26 + . . scaffold43526 GLEAN mRNA 38453 38530 0.985699 + . ID=CGI_10010784; scaffold43526 WUBlastX LINE_RTE-X 38453 38530 59 + . . scaffold43526 GLEAN mRNA 42864 43361 0.985699 + . ID=CGI_10010784; scaffold43526 WUBlastX LINE_L1-Tx1 42864 43361 67 + . . scaffold43526 GLEAN mRNA 37356 37619 0.985699 + . ID=CGI_10010784; scaffold43526 WUBlastX LINE_RTE-X 37356 37619 82 + . . scaffold43526 GLEAN mRNA 49971 49998 0.985699 + . ID=CGI_10010784; scaffold43526 TRF Tandem_Repeat 49971 49998 56 + . . scaffold43526 GLEAN mRNA 58115 58157 0.985699 + . ID=CGI_10010784; scaffold43526 TRF Tandem_Repeat 58115 58157 86 + . . scaffold43526 GLEAN mRNA 60576 60622 0.985699 + . ID=CGI_10010784; scaffold43526 TRF Tandem_Repeat 60576 60622 94 + . . scaffold43526 GLEAN mRNA 86680 86797 0.227501 - . ID=CGI_10010786; scaffold43526 TRF Tandem_Repeat 86680 86797 73 + . . scaffold43526 GLEAN mRNA 94443 94477 0.227501 - . ID=CGI_10010786; scaffold43526 TRF Tandem_Repeat 94443 94477 70 + . . scaffold43526 GLEAN mRNA 102453 102777 0.227501 - . ID=CGI_10010786; scaffold43526 TRF Tandem_Repeat 102453 102777 402 + . . scaffold43526 GLEAN mRNA 103406 103604 0.227501 - . ID=CGI_10010786; scaffold43526 TRF Tandem_Repeat 103406 103604 344 + . . scaffold43526 GLEAN mRNA 104789 104835 0.227501 - . ID=CGI_10010786; scaffold43526 TRF Tandem_Repeat 104789 104835 94 + . . scaffold43526 GLEAN mRNA 105072 105331 0.227501 - . ID=CGI_10010786; scaffold43526 TRF Tandem_Repeat 105072 105331 304 + . . scaffold43526 GLEAN mRNA 105072 105331 0.227501 - . ID=CGI_10010786; scaffold43526 TRF Tandem_Repeat 105072 105331 290 + . . scaffold43526 GLEAN mRNA 105072 105331 0.227501 - . ID=CGI_10010786; scaffold43526 TRF Tandem_Repeat 105072 105331 306 + . . scaffold43526 GLEAN mRNA 105979 106303 0.227501 - . ID=CGI_10010786; scaffold43526 TRF Tandem_Repeat 105979 106303 384 + . . scaffold43526 GLEAN mRNA 105979 106305 0.227501 - . ID=CGI_10010786; scaffold43526 TRF Tandem_Repeat 105979 106305 396 + . . scaffold43526 GLEAN mRNA 109490 110198 0.227501 - . ID=CGI_10010786; scaffold43526 TRF Tandem_Repeat 109490 110198 383 + . . scaffold43526 GLEAN mRNA 169717 169845 0.999991 + . ID=CGI_10010788; scaffold43526 WUBlastX LTR_Pao 169717 169845 20 + . . scaffold43526 GLEAN mRNA 240855 240922 1 - . ID=CGI_10010791; scaffold43526 TRF Tandem_Repeat 240855 240922 136 + . . scaffold1098 GLEAN mRNA 8886 8910 0.988441 + . ID=CGI_10010793; scaffold1098 TRF Tandem_Repeat 8886 8910 50 + . . scaffold1098 GLEAN mRNA 17695 18844 0.988441 + . ID=CGI_10010793; scaffold1098 TRF Tandem_Repeat 17695 18844 331 + . . scaffold1098 GLEAN mRNA 17695 18840 0.988441 + . ID=CGI_10010793; scaffold1098 TRF Tandem_Repeat 17695 18840 325 + . . scaffold1098 GLEAN mRNA 18615 18844 0.988441 + . ID=CGI_10010793; scaffold1098 TRF Tandem_Repeat 18615 18844 122 + . . scaffold1098 GLEAN mRNA 19241 19300 0.988441 + . ID=CGI_10010793; scaffold1098 TRF Tandem_Repeat 19241 19300 93 + . . scaffold1098 GLEAN mRNA 71922 71953 1 - . ID=CGI_10010795; scaffold1098 TRF Tandem_Repeat 71922 71953 55 + . . scaffold1098 GLEAN mRNA 70635 70973 1 - . ID=CGI_10010795; scaffold1098 WUBlastX LTR_Pao 70635 70973 109 + . . scaffold1098 GLEAN mRNA 71145 71708 1 - . ID=CGI_10010795; scaffold1098 WUBlastX LTR_Pao 71145 71708 270 + . . scaffold1098 GLEAN mRNA 70554 70937 1 - . ID=CGI_10010795; scaffold1098 WUBlastX LTR_Pao 70554 70937 23 + . . scaffold1098 GLEAN mRNA 127185 127313 0.999983 - . ID=CGI_10010797; scaffold1098 WUBlastX DNA_Sola 127185 127313 26 - . . scaffold1098 GLEAN mRNA 127368 127688 0.999983 - . ID=CGI_10010797; scaffold1098 WUBlastX DNA_Sola 127368 127688 53 - . . scaffold1098 GLEAN mRNA 230208 230241 0.353937 - . ID=CGI_10010798; scaffold1098 TRF Tandem_Repeat 230208 230241 68 + . . scaffold1098 GLEAN mRNA 242788 242851 0.353937 - . ID=CGI_10010798; scaffold1098 TRF Tandem_Repeat 242788 242851 128 + . . scaffold1098 GLEAN mRNA 242849 242895 0.353937 - . ID=CGI_10010798; scaffold1098 TRF Tandem_Repeat 242849 242895 94 + . . scaffold1098 GLEAN mRNA 232841 232948 0.353937 - . ID=CGI_10010798; scaffold1098 WUBlastX DNA_TcMar-Marin 232841 232948 55 + . . scaffold1098 GLEAN mRNA 246102 246189 0.353937 - . ID=CGI_10010798; scaffold1098 TRF Tandem_Repeat 246102 246189 90 + . . scaffold1098 GLEAN mRNA 254147 254256 0.353937 - . ID=CGI_10010798; scaffold1098 TRF Tandem_Repeat 254147 254256 60 + . . scaffold1098 GLEAN mRNA 259040 259096 0.353937 - . ID=CGI_10010798; scaffold1098 TRF Tandem_Repeat 259040 259096 114 + . . scaffold1098 GLEAN mRNA 264772 264939 0.353937 - . ID=CGI_10010798; scaffold1098 WUBlastX DNA_TcMar-Tc1 264772 264939 71 + . . scaffold1098 GLEAN mRNA 264953 265330 0.353937 - . ID=CGI_10010798; scaffold1098 WUBlastX DNA_TcMar-Tc1 264953 265330 153 + . . scaffold1753 GLEAN mRNA 7359 7428 1 + . ID=CGI_10010799; scaffold1753 TRF Tandem_Repeat 7359 7428 88 + . . scaffold1753 GLEAN mRNA 7623 8456 1 + . ID=CGI_10010799; scaffold1753 TRF Tandem_Repeat 7623 8456 1271 + . . scaffold1753 GLEAN mRNA 44291 44905 0.996749 + . ID=CGI_10010802; scaffold1753 WUBlastX DNA_Helitron 44291 44905 131 + . . scaffold1753 GLEAN mRNA 43160 44362 0.996749 + . ID=CGI_10010802; scaffold1753 WUBlastX RC_Helitron 43160 44362 20 + . . scaffold1753 GLEAN mRNA 43757 43867 0.996749 + . ID=CGI_10010802; scaffold1753 WUBlastX RC_Helitron 43757 43867 24 + . . scaffold1753 GLEAN mRNA 43904 44905 0.996749 + . ID=CGI_10010802; scaffold1753 WUBlastX RC_Helitron 43904 44905 70 + . . scaffold1753 GLEAN mRNA 42602 43102 0.996749 + . ID=CGI_10010802; scaffold1753 WUBlastX RC_Helitron 42602 43102 22 + . . scaffold1753 GLEAN mRNA 43799 44341 0.996749 + . ID=CGI_10010802; scaffold1753 WUBlastX RC_Helitron 43799 44341 66 + . . scaffold1753 GLEAN mRNA 108411 108444 1 + . ID=CGI_10010805; scaffold1753 TRF Tandem_Repeat 108411 108444 50 + . . scaffold1753 GLEAN mRNA 108442 108490 1 + . ID=CGI_10010805; scaffold1753 TRF Tandem_Repeat 108442 108490 62 + . . scaffold1753 GLEAN mRNA 148310 148428 0.791978 + . ID=CGI_10010806; scaffold1753 TRF Tandem_Repeat 148310 148428 125 + . . scaffold1753 GLEAN mRNA 172185 172256 0.615229 - . ID=CGI_10010807; scaffold1753 TRF Tandem_Repeat 172185 172256 130 + . . scaffold1753 GLEAN mRNA 173522 173719 0.615229 - . ID=CGI_10010807; scaffold1753 TRF Tandem_Repeat 173522 173719 157 + . . scaffold1753 GLEAN mRNA 183102 183155 0.615229 - . ID=CGI_10010807; scaffold1753 TRF Tandem_Repeat 183102 183155 83 + . . scaffold1753 GLEAN mRNA 185161 186447 0.615229 - . ID=CGI_10010807; scaffold1753 TRF Tandem_Repeat 185161 186447 1854 + . . scaffold1753 GLEAN mRNA 186455 186517 0.615229 - . ID=CGI_10010807; scaffold1753 TRF Tandem_Repeat 186455 186517 74 + . . scaffold1753 GLEAN mRNA 233994 235386 0.841405 + . ID=CGI_10010810; scaffold1753 TRF Tandem_Repeat 233994 235386 1635 + . . scaffold1753 GLEAN mRNA 233994 235423 0.841405 + . ID=CGI_10010810; scaffold1753 TRF Tandem_Repeat 233994 235423 1832 + . . scaffold1753 GLEAN mRNA 240375 240411 0.841405 + . ID=CGI_10010810; scaffold1753 TRF Tandem_Repeat 240375 240411 74 + . . scaffold1753 GLEAN mRNA 241276 241321 0.841405 + . ID=CGI_10010810; scaffold1753 TRF Tandem_Repeat 241276 241321 74 + . . scaffold1753 GLEAN mRNA 269566 269592 0.949513 - . ID=CGI_10010811; scaffold1753 TRF Tandem_Repeat 269566 269592 54 + . . scaffold1753 GLEAN mRNA 272689 272728 0.949513 - . ID=CGI_10010811; scaffold1753 TRF Tandem_Repeat 272689 272728 80 + . . scaffold1753 GLEAN mRNA 265571 266425 0.949513 - . ID=CGI_10010811; scaffold1753 WUBlastX LINE_L1-Tx1 265571 266425 41 - . . scaffold1753 GLEAN mRNA 266617 266784 0.949513 - . ID=CGI_10010811; scaffold1753 WUBlastX LINE_L1-Tx1 266617 266784 51 - . . scaffold1753 GLEAN mRNA 265192 265581 0.949513 - . ID=CGI_10010811; scaffold1753 WUBlastX LINE_L1-Tx1 265192 265581 55 - . . scaffold1753 GLEAN mRNA 266805 267875 0.949513 - . ID=CGI_10010811; scaffold1753 WUBlastX LINE_L1-Tx1 266805 267875 40 - . . scaffold1753 GLEAN mRNA 266270 266488 0.949513 - . ID=CGI_10010811; scaffold1753 WUBlastX LINE_L1-Tx1 266270 266488 46 - . . scaffold1753 GLEAN mRNA 266781 266906 0.949513 - . ID=CGI_10010811; scaffold1753 WUBlastX LINE_L1 266781 266906 53 - . . scaffold1753 GLEAN mRNA 266814 267389 0.949513 - . ID=CGI_10010811; scaffold1753 WUBlastX LINE_L1 266814 267389 85 - . . scaffold1753 GLEAN mRNA 266270 266428 0.949513 - . ID=CGI_10010811; scaffold1753 WUBlastX LINE_L1-Tx1 266270 266428 50 - . . scaffold43538 GLEAN mRNA 10608 11027 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy-Cigr 10608 11027 66 + . . scaffold43538 GLEAN mRNA 12117 13187 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy-Cigr 12117 13187 243 + . . scaffold43538 GLEAN mRNA 10572 10748 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy 10572 10748 32 + . . scaffold43538 GLEAN mRNA 11738 12730 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy 11738 12730 299 + . . scaffold43538 GLEAN mRNA 11092 11373 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy 11092 11373 150 + . . scaffold43538 GLEAN mRNA 12380 12730 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy 12380 12730 344 + . . scaffold43538 GLEAN mRNA 11152 11373 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy-Cigr 11152 11373 179 + . . scaffold43538 GLEAN mRNA 10686 11165 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy 10686 11165 69 + . . scaffold43538 GLEAN mRNA 11367 11756 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy 11367 11756 290 + . . scaffold43538 GLEAN mRNA 31880 32503 0.988787 - . ID=CGI_10010813; scaffold43538 WUBlastX LTR_Gypsy 31880 32503 27 + . . scaffold43538 GLEAN mRNA 32012 32215 0.988787 - . ID=CGI_10010813; scaffold43538 WUBlastX LTR_Gypsy 32012 32215 42 + . . scaffold43538 GLEAN mRNA 32075 32515 0.988787 - . ID=CGI_10010813; scaffold43538 WUBlastX LTR_Gypsy-Cigr 32075 32515 178 + . . scaffold43538 GLEAN mRNA 34919 35122 0.988787 - . ID=CGI_10010813; scaffold43538 WUBlastX LTR_Gypsy-Cigr 34919 35122 89 + . . scaffold43538 GLEAN mRNA 34574 34780 0.988787 - . ID=CGI_10010813; scaffold43538 WUBlastX LTR_Gypsy 34574 34780 186 + . . scaffold43538 GLEAN mRNA 33559 34578 0.988787 - . ID=CGI_10010813; scaffold43538 WUBlastX LTR_Gypsy-Cigr 33559 34578 498 + . . scaffold43538 GLEAN mRNA 34568 34918 0.988787 - . ID=CGI_10010813; scaffold43538 WUBlastX LTR_Gypsy 34568 34918 77 + . . scaffold43538 GLEAN mRNA 32425 33960 0.988787 - . ID=CGI_10010813; scaffold43538 WUBlastX LTR_Gypsy 32425 33960 380 + . . scaffold43538 GLEAN mRNA 32677 34578 0.988787 - . ID=CGI_10010813; scaffold43538 WUBlastX LTR_Gypsy 32677 34578 444 + . . scaffold43538 GLEAN mRNA 98339 98372 0.999999 + . ID=CGI_10010819; scaffold43538 TRF Tandem_Repeat 98339 98372 68 + . . scaffold43538 GLEAN mRNA 100690 100716 0.999999 + . ID=CGI_10010819; scaffold43538 TRF Tandem_Repeat 100690 100716 54 + . . scaffold43538 GLEAN mRNA 117424 117843 0.999744 + . ID=CGI_10010820; scaffold43538 TRF Tandem_Repeat 117424 117843 387 + . . scaffold43538 GLEAN mRNA 129474 129963 0.993977 - . ID=CGI_10010821; scaffold43538 TRF Tandem_Repeat 129474 129963 427 + . . scaffold43538 GLEAN mRNA 133095 134594 0.993977 - . ID=CGI_10010821; scaffold43538 TRF Tandem_Repeat 133095 134594 2164 + . . scaffold43538 GLEAN mRNA 133315 134594 0.993977 - . ID=CGI_10010821; scaffold43538 TRF Tandem_Repeat 133315 134594 1904 + . . scaffold43538 GLEAN mRNA 133095 134537 0.993977 - . ID=CGI_10010821; scaffold43538 TRF Tandem_Repeat 133095 134537 2059 + . . scaffold43538 GLEAN mRNA 136442 137464 0.993977 - . ID=CGI_10010821; scaffold43538 TRF Tandem_Repeat 136442 137464 1538 + . . scaffold43538 GLEAN mRNA 136442 137464 0.993977 - . ID=CGI_10010821; scaffold43538 TRF Tandem_Repeat 136442 137464 1564 + . . scaffold43538 GLEAN mRNA 139948 140145 0.993977 - . ID=CGI_10010821; scaffold43538 TRF Tandem_Repeat 139948 140145 218 + . . scaffold43538 GLEAN mRNA 143395 143892 0.937813 + . ID=CGI_10010822; scaffold43538 TRF Tandem_Repeat 143395 143892 599 + . . scaffold43538 GLEAN mRNA 146030 146624 0.937813 + . ID=CGI_10010822; scaffold43538 TRF Tandem_Repeat 146030 146624 865 + . . scaffold43538 GLEAN mRNA 146790 146979 0.937813 + . ID=CGI_10010822; scaffold43538 TRF Tandem_Repeat 146790 146979 199 + . . scaffold43538 GLEAN mRNA 148307 148350 0.937813 + . ID=CGI_10010822; scaffold43538 TRF Tandem_Repeat 148307 148350 79 + . . scaffold43538 GLEAN mRNA 148462 149058 0.937813 + . ID=CGI_10010822; scaffold43538 TRF Tandem_Repeat 148462 149058 1176 + . . scaffold43538 GLEAN mRNA 149117 149252 0.937813 + . ID=CGI_10010822; scaffold43538 TRF Tandem_Repeat 149117 149252 272 + . . scaffold43538 GLEAN mRNA 150114 150405 0.937813 + . ID=CGI_10010822; scaffold43538 TRF Tandem_Repeat 150114 150405 487 + . . scaffold43538 GLEAN mRNA 152453 153794 1 - . ID=CGI_10010823; scaffold43538 TRF Tandem_Repeat 152453 153794 1701 + . . scaffold43538 GLEAN mRNA 155110 155847 1 - . ID=CGI_10010823; scaffold43538 WUBlastX LINE_CR1 155110 155847 166 + . . scaffold43538 GLEAN mRNA 155416 155844 1 - . ID=CGI_10010823; scaffold43538 WUBlastX LINE_CR1 155416 155844 222 + . . scaffold43538 GLEAN mRNA 155064 155363 1 - . ID=CGI_10010823; scaffold43538 WUBlastX LINE_CR1 155064 155363 51 + . . scaffold43538 GLEAN mRNA 155431 155928 1 - . ID=CGI_10010823; scaffold43538 WUBlastX LINE_CR1 155431 155928 183 + . . scaffold43538 GLEAN mRNA 154836 155327 1 - . ID=CGI_10010823; scaffold43538 WUBlastX LINE_CR1 154836 155327 30 + . . scaffold43538 GLEAN mRNA 155919 155963 1 - . ID=CGI_10010823; scaffold43538 WUBlastX LINE_CR1 155919 155963 27 + . . scaffold43538 GLEAN mRNA 165324 166429 0.66007 - . ID=CGI_10010825; scaffold43538 TRF Tandem_Repeat 165324 166429 1552 + . . scaffold43538 GLEAN mRNA 166453 166512 0.66007 - . ID=CGI_10010825; scaffold43538 TRF Tandem_Repeat 166453 166512 70 + . . scaffold43538 GLEAN mRNA 166460 166517 0.66007 - . ID=CGI_10010825; scaffold43538 TRF Tandem_Repeat 166460 166517 66 + . . scaffold43538 GLEAN mRNA 168514 169510 0.66007 - . ID=CGI_10010825; scaffold43538 TRF Tandem_Repeat 168514 169510 1383 + . . scaffold43538 GLEAN mRNA 169534 169593 0.66007 - . ID=CGI_10010825; scaffold43538 TRF Tandem_Repeat 169534 169593 70 + . . scaffold43538 GLEAN mRNA 169541 169598 0.66007 - . ID=CGI_10010825; scaffold43538 TRF Tandem_Repeat 169541 169598 66 + . . scaffold43538 GLEAN mRNA 189666 189718 0.99946 + . ID=CGI_10010827; scaffold43538 TRF Tandem_Repeat 189666 189718 61 + . . scaffold19 GLEAN mRNA 24724 24875 0.494317 - . ID=CGI_10010829; scaffold19 TRF Tandem_Repeat 24724 24875 110 + . . scaffold19 GLEAN mRNA 24773 25174 0.494317 - . ID=CGI_10010829; scaffold19 TRF Tandem_Repeat 24773 25174 670 + . . scaffold19 GLEAN mRNA 34377 35506 0.494317 - . ID=CGI_10010829; scaffold19 TRF Tandem_Repeat 34377 35506 1345 + . . scaffold19 GLEAN mRNA 35677 35708 0.494317 - . ID=CGI_10010829; scaffold19 TRF Tandem_Repeat 35677 35708 55 + . . scaffold19 GLEAN mRNA 76017 76069 1 + . ID=CGI_10010832; scaffold19 TRF Tandem_Repeat 76017 76069 106 + . . scaffold19 GLEAN mRNA 131454 132937 0.596648 - . ID=CGI_10010836; scaffold19 TRF Tandem_Repeat 131454 132937 1436 + . . scaffold19 GLEAN mRNA 138732 139592 0.596648 - . ID=CGI_10010836; scaffold19 WUBlastX LTR_DIRS 138732 139592 143 - . . scaffold19 GLEAN mRNA 140955 141047 0.596648 - . ID=CGI_10010836; scaffold19 WUBlastX LTR_Gypsy 140955 141047 26 - . . scaffold19 GLEAN mRNA 140068 140583 0.596648 - . ID=CGI_10010836; scaffold19 WUBlastX LTR_DIRS 140068 140583 329 - . . scaffold19 GLEAN mRNA 139017 139592 0.596648 - . ID=CGI_10010836; scaffold19 WUBlastX LTR_DIRS 139017 139592 196 - . . scaffold19 GLEAN mRNA 139673 140113 0.596648 - . ID=CGI_10010836; scaffold19 WUBlastX LTR_DIRS 139673 140113 140 - . . scaffold19 GLEAN mRNA 141409 141654 0.596648 - . ID=CGI_10010836; scaffold19 WUBlastX LTR_Gypsy 141409 141654 27 - . . scaffold19 GLEAN mRNA 140068 140769 0.596648 - . ID=CGI_10010836; scaffold19 WUBlastX LTR_DIRS 140068 140769 233 - . . scaffold19 GLEAN mRNA 140706 140957 0.596648 - . ID=CGI_10010836; scaffold19 WUBlastX LTR_Gypsy 140706 140957 26 - . . scaffold19 GLEAN mRNA 152712 153215 0.999878 + . ID=CGI_10010837; scaffold19 WUBlastX DNA_TcMar-Tc1 152712 153215 174 - . . scaffold19 GLEAN mRNA 152225 152605 0.999878 + . ID=CGI_10010837; scaffold19 WUBlastX DNA_TcMar-Tc1 152225 152605 157 - . . scaffold19 GLEAN mRNA 152712 153317 0.999878 + . ID=CGI_10010837; scaffold19 WUBlastX DNA_TcMar-Tc1 152712 153317 96 - . . scaffold19 GLEAN mRNA 152225 152536 0.999878 + . ID=CGI_10010837; scaffold19 WUBlastX DNA_TcMar-Tc1 152225 152536 190 - . . scaffold19 GLEAN mRNA 152524 152664 0.999878 + . ID=CGI_10010837; scaffold19 WUBlastX DNA_TcMar-Tc1 152524 152664 39 - . . scaffold19 GLEAN mRNA 152530 152715 0.999878 + . ID=CGI_10010837; scaffold19 WUBlastX DNA_TcMar-Tc1 152530 152715 38 - . . scaffold19 GLEAN mRNA 200208 200554 0.651568 + . ID=CGI_10010840; scaffold19 TRF Tandem_Repeat 200208 200554 300 + . . scaffold19 GLEAN mRNA 201080 201187 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 201080 201187 21 + . . scaffold19 GLEAN mRNA 198993 199169 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 198993 199169 43 + . . scaffold19 GLEAN mRNA 197615 198004 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 197615 198004 54 + . . scaffold19 GLEAN mRNA 198398 198976 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 198398 198976 218 + . . scaffold19 GLEAN mRNA 199349 199603 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 199349 199603 51 + . . scaffold19 GLEAN mRNA 199606 200037 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 199606 200037 129 + . . scaffold19 GLEAN mRNA 198999 199436 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 198999 199436 41 + . . scaffold19 GLEAN mRNA 198198 198278 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 198198 198278 35 + . . scaffold19 GLEAN mRNA 201053 201187 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS? 201053 201187 20 + . . scaffold19 GLEAN mRNA 201192 201338 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS? 201192 201338 78 + . . scaffold19 GLEAN mRNA 209638 209835 0.911458 - . ID=CGI_10010841; scaffold19 TRF Tandem_Repeat 209638 209835 360 + . . scaffold43536 GLEAN mRNA 4856 4888 0.593383 + . ID=CGI_10010843; scaffold43536 TRF Tandem_Repeat 4856 4888 66 + . . scaffold43536 GLEAN mRNA 16926 16975 0.999999 + . ID=CGI_10010846; scaffold43536 TRF Tandem_Repeat 16926 16975 100 + . . scaffold43536 GLEAN mRNA 23960 24041 0.671547 - . ID=CGI_10010847; scaffold43536 TRF Tandem_Repeat 23960 24041 51 + . . scaffold43536 GLEAN mRNA 32182 32329 0.999996 + . ID=CGI_10010849; scaffold43536 TRF Tandem_Repeat 32182 32329 224 + . . scaffold43536 GLEAN mRNA 55867 55898 0.728612 + . ID=CGI_10010851; scaffold43536 TRF Tandem_Repeat 55867 55898 64 + . . scaffold43536 GLEAN mRNA 58224 58255 0.728612 + . ID=CGI_10010851; scaffold43536 TRF Tandem_Repeat 58224 58255 55 + . . scaffold43536 GLEAN mRNA 104477 104662 0.849816 + . ID=CGI_10010853; scaffold43536 TRF Tandem_Repeat 104477 104662 159 + . . scaffold43536 GLEAN mRNA 105320 105466 0.849816 + . ID=CGI_10010853; scaffold43536 TRF Tandem_Repeat 105320 105466 240 + . . scaffold43536 GLEAN mRNA 114183 114236 0.651135 + . ID=CGI_10010854; scaffold43536 TRF Tandem_Repeat 114183 114236 108 + . . scaffold43536 GLEAN mRNA 263209 263250 0.995282 + . ID=CGI_10010866; scaffold43536 TRF Tandem_Repeat 263209 263250 68 + . . scaffold43574 GLEAN mRNA 854 1460 1 + . ID=CGI_10010868; scaffold43574 TRF Tandem_Repeat 854 1460 714 + . . scaffold43574 GLEAN mRNA 43414 43686 0.999621 - . ID=CGI_10010869; scaffold43574 TRF Tandem_Repeat 43414 43686 413 + . . scaffold43574 GLEAN mRNA 44185 44623 0.999621 - . ID=CGI_10010869; scaffold43574 TRF Tandem_Repeat 44185 44623 367 + . . scaffold43574 GLEAN mRNA 44167 44765 0.999621 - . ID=CGI_10010869; scaffold43574 TRF Tandem_Repeat 44167 44765 410 + . . scaffold43574 GLEAN mRNA 44173 44689 0.999621 - . ID=CGI_10010869; scaffold43574 TRF Tandem_Repeat 44173 44689 361 + . . scaffold43574 GLEAN mRNA 45666 45700 0.999621 - . ID=CGI_10010869; scaffold43574 TRF Tandem_Repeat 45666 45700 61 + . . scaffold43574 GLEAN mRNA 56826 57264 1 + . ID=CGI_10010870; scaffold43574 TRF Tandem_Repeat 56826 57264 479 + . . scaffold43574 GLEAN mRNA 71188 71432 0.999051 + . ID=CGI_10010872; scaffold43574 TRF Tandem_Repeat 71188 71432 298 + . . scaffold43574 GLEAN mRNA 103173 103234 0.997818 + . ID=CGI_10010873; scaffold43574 TRF Tandem_Repeat 103173 103234 124 + . . scaffold43574 GLEAN mRNA 113608 113771 0.999414 - . ID=CGI_10010874; scaffold43574 TRF Tandem_Repeat 113608 113771 301 + . . scaffold43574 GLEAN mRNA 114002 114027 0.999414 - . ID=CGI_10010874; scaffold43574 TRF Tandem_Repeat 114002 114027 52 + . . scaffold43574 GLEAN mRNA 114747 114771 0.999414 - . ID=CGI_10010874; scaffold43574 TRF Tandem_Repeat 114747 114771 50 + . . scaffold43574 GLEAN mRNA 116004 116379 0.999414 - . ID=CGI_10010874; scaffold43574 TRF Tandem_Repeat 116004 116379 565 + . . scaffold43574 GLEAN mRNA 116450 117197 0.999414 - . ID=CGI_10010874; scaffold43574 TRF Tandem_Repeat 116450 117197 1094 + . . scaffold43574 GLEAN mRNA 122450 122723 0.999414 - . ID=CGI_10010874; scaffold43574 TRF Tandem_Repeat 122450 122723 305 + . . scaffold43574 GLEAN mRNA 122452 122723 0.999414 - . ID=CGI_10010874; scaffold43574 TRF Tandem_Repeat 122452 122723 301 + . . scaffold43574 GLEAN mRNA 144362 144409 0.353212 + . ID=CGI_10010876; scaffold43574 TRF Tandem_Repeat 144362 144409 78 + . . scaffold43574 GLEAN mRNA 145877 145935 0.353212 + . ID=CGI_10010876; scaffold43574 TRF Tandem_Repeat 145877 145935 57 + . . scaffold43574 GLEAN mRNA 148747 148815 1 + . ID=CGI_10010877; scaffold43574 TRF Tandem_Repeat 148747 148815 120 + . . scaffold43574 GLEAN mRNA 154942 155028 0.999476 - . ID=CGI_10010878; scaffold43574 TRF Tandem_Repeat 154942 155028 115 + . . scaffold43574 GLEAN mRNA 154943 155028 0.999476 - . ID=CGI_10010878; scaffold43574 TRF Tandem_Repeat 154943 155028 100 + . . scaffold43574 GLEAN mRNA 173212 173453 0.999476 - . ID=CGI_10010878; scaffold43574 TRF Tandem_Repeat 173212 173453 432 + . . scaffold43574 GLEAN mRNA 173212 173453 0.614411 + . ID=CGI_10010879; scaffold43574 TRF Tandem_Repeat 173212 173453 432 + . . scaffold43574 GLEAN mRNA 185415 185717 0.814122 + . ID=CGI_10010880; scaffold43574 TRF Tandem_Repeat 185415 185717 382 + . . scaffold43574 GLEAN mRNA 187804 188416 0.814122 + . ID=CGI_10010880; scaffold43574 TRF Tandem_Repeat 187804 188416 845 + . . scaffold43574 GLEAN mRNA 187804 188416 0.814122 + . ID=CGI_10010880; scaffold43574 TRF Tandem_Repeat 187804 188416 966 + . . scaffold43574 GLEAN mRNA 189883 190088 0.814122 + . ID=CGI_10010880; scaffold43574 TRF Tandem_Repeat 189883 190088 403 + . . scaffold43574 GLEAN mRNA 191131 191197 0.814122 + . ID=CGI_10010880; scaffold43574 TRF Tandem_Repeat 191131 191197 134 + . . scaffold43574 GLEAN mRNA 186582 187181 0.814122 + . ID=CGI_10010880; scaffold43574 WUBlastX LINE_RTE-X 186582 187181 102 - . . scaffold43574 GLEAN mRNA 186708 187181 0.814122 + . ID=CGI_10010880; scaffold43574 WUBlastX LINE_RTE-X 186708 187181 125 - . . scaffold43574 GLEAN mRNA 204178 204378 0.700735 - . ID=CGI_10010881; scaffold43574 TRF Tandem_Repeat 204178 204378 339 + . . scaffold43574 GLEAN mRNA 214701 214739 0.700735 - . ID=CGI_10010881; scaffold43574 TRF Tandem_Repeat 214701 214739 51 + . . scaffold43574 GLEAN mRNA 233545 233782 0.996968 + . ID=CGI_10010882; scaffold43574 TRF Tandem_Repeat 233545 233782 160 + . . scaffold43574 GLEAN mRNA 233403 233819 0.996968 + . ID=CGI_10010882; scaffold43574 TRF Tandem_Repeat 233403 233819 320 + . . scaffold43574 GLEAN mRNA 246328 248010 1 - . ID=CGI_10010884; scaffold43574 WUBlastX LINE_RTE-X 246328 248010 615 + . . scaffold43574 GLEAN mRNA 246241 246798 1 - . ID=CGI_10010884; scaffold43574 WUBlastX LINE_RTE-BovB 246241 246798 126 + . . scaffold43574 GLEAN mRNA 266453 267079 0.775763 + . ID=CGI_10010886; scaffold43574 WUBlastX LINE_R2-Hero 266453 267079 143 - . . scaffold43574 GLEAN mRNA 265933 266412 0.775763 + . ID=CGI_10010886; scaffold43574 WUBlastX LINE_R2-Hero 265933 266412 35 - . . scaffold43574 GLEAN mRNA 266375 266755 0.775763 + . ID=CGI_10010886; scaffold43574 WUBlastX LINE_R2-Hero 266375 266755 131 - . . scaffold793 GLEAN mRNA 4444 4477 0.959188 - . ID=CGI_10010887; scaffold793 TRF Tandem_Repeat 4444 4477 61 + . . scaffold793 GLEAN mRNA 19968 20106 0.937847 - . ID=CGI_10010889; scaffold793 TRF Tandem_Repeat 19968 20106 219 + . . scaffold793 GLEAN mRNA 62038 62319 0.384935 + . ID=CGI_10010892; scaffold793 WUBlastX DNA_hAT-Blackja 62038 62319 50 - . . scaffold793 GLEAN mRNA 62970 63155 0.384935 + . ID=CGI_10010892; scaffold793 WUBlastX DNA_NOF 62970 63155 89 + . . scaffold793 GLEAN mRNA 63663 63770 0.384935 + . ID=CGI_10010892; scaffold793 WUBlastX DNA_NOF 63663 63770 58 + . . scaffold793 GLEAN mRNA 63663 63794 0.384935 + . ID=CGI_10010892; scaffold793 WUBlastX DNA_MuDR 63663 63794 53 + . . scaffold793 GLEAN mRNA 67491 67610 0.384935 + . ID=CGI_10010892; scaffold793 WUBlastX DNA_NOF 67491 67610 31 + . . scaffold793 GLEAN mRNA 67557 67619 0.384935 + . ID=CGI_10010892; scaffold793 WUBlastX DNA_NOF 67557 67619 32 + . . scaffold793 GLEAN mRNA 71568 71693 0.384935 + . ID=CGI_10010892; scaffold793 WUBlastX LINE_Penelope 71568 71693 51 + . . scaffold793 GLEAN mRNA 71678 71953 0.384935 + . ID=CGI_10010892; scaffold793 WUBlastX LINE_Penelope 71678 71953 42 + . . scaffold793 GLEAN mRNA 71962 72099 0.384935 + . ID=CGI_10010892; scaffold793 WUBlastX LINE_Penelope 71962 72099 45 + . . scaffold793 GLEAN mRNA 190156 191334 0.962647 + . ID=CGI_10010897; scaffold793 TRF Tandem_Repeat 190156 191334 1290 + . . scaffold793 GLEAN mRNA 195503 195649 0.962647 + . ID=CGI_10010897; scaffold793 TRF Tandem_Repeat 195503 195649 258 + . . scaffold793 GLEAN mRNA 210026 210051 1 + . ID=CGI_10010898; scaffold793 TRF Tandem_Repeat 210026 210051 52 + . . scaffold793 GLEAN mRNA 221210 221374 0.702157 + . ID=CGI_10010899; scaffold793 TRF Tandem_Repeat 221210 221374 210 + . . scaffold793 GLEAN mRNA 221300 221422 0.702157 + . ID=CGI_10010899; scaffold793 TRF Tandem_Repeat 221300 221422 219 + . . scaffold793 GLEAN mRNA 236684 236735 0.448337 + . ID=CGI_10010900; scaffold793 TRF Tandem_Repeat 236684 236735 104 + . . scaffold793 GLEAN mRNA 266373 266418 0.999676 + . ID=CGI_10010902; scaffold793 TRF Tandem_Repeat 266373 266418 85 + . . scaffold793 GLEAN mRNA 273761 273790 0.999676 + . ID=CGI_10010902; scaffold793 TRF Tandem_Repeat 273761 273790 60 + . . scaffold1759 GLEAN mRNA 86053 86176 0.889634 + . ID=CGI_10010906; scaffold1759 TRF Tandem_Repeat 86053 86176 78 + . . scaffold1759 GLEAN mRNA 88854 88892 0.889634 + . ID=CGI_10010906; scaffold1759 TRF Tandem_Repeat 88854 88892 78 + . . scaffold1759 GLEAN mRNA 94776 94813 0.889634 + . ID=CGI_10010906; scaffold1759 TRF Tandem_Repeat 94776 94813 76 + . . scaffold1759 GLEAN mRNA 96653 96700 0.889634 + . ID=CGI_10010906; scaffold1759 WUBlastX LTR_Gypsy 96653 96700 20 + . . scaffold1759 GLEAN mRNA 98562 98631 0.889634 + . ID=CGI_10010906; scaffold1759 TRF Tandem_Repeat 98562 98631 79 + . . scaffold1759 GLEAN mRNA 100334 101228 0.889634 + . ID=CGI_10010906; scaffold1759 TRF Tandem_Repeat 100334 101228 1091 + . . scaffold1759 GLEAN mRNA 102041 102268 0.889634 + . ID=CGI_10010906; scaffold1759 WUBlastX LTR_Gypsy 102041 102268 26 + . . scaffold1759 GLEAN mRNA 102996 103109 0.889634 + . ID=CGI_10010906; scaffold1759 WUBlastX LTR_Gypsy 102996 103109 31 + . . scaffold1759 GLEAN mRNA 114302 114411 0.911601 + . ID=CGI_10010907; scaffold1759 TRF Tandem_Repeat 114302 114411 62 + . . scaffold1759 GLEAN mRNA 117235 117349 0.911601 + . ID=CGI_10010907; scaffold1759 TRF Tandem_Repeat 117235 117349 72 + . . scaffold1759 GLEAN mRNA 117451 117506 0.911601 + . ID=CGI_10010907; scaffold1759 TRF Tandem_Repeat 117451 117506 112 + . . scaffold1288 GLEAN mRNA 46394 46446 0.998981 - . ID=CGI_10010912; scaffold1288 TRF Tandem_Repeat 46394 46446 51 + . . scaffold1288 GLEAN mRNA 46409 46451 0.998981 - . ID=CGI_10010912; scaffold1288 TRF Tandem_Repeat 46409 46451 68 + . . scaffold1288 GLEAN mRNA 55633 55799 0.592769 - . ID=CGI_10010913; scaffold1288 TRF Tandem_Repeat 55633 55799 235 + . . scaffold1288 GLEAN mRNA 58042 58405 0.592769 - . ID=CGI_10010913; scaffold1288 TRF Tandem_Repeat 58042 58405 385 + . . scaffold1288 GLEAN mRNA 58051 58405 0.592769 - . ID=CGI_10010913; scaffold1288 TRF Tandem_Repeat 58051 58405 471 + . . scaffold1288 GLEAN mRNA 58024 58381 0.592769 - . ID=CGI_10010913; scaffold1288 TRF Tandem_Repeat 58024 58381 467 + . . scaffold1288 GLEAN mRNA 60479 60737 0.592769 - . ID=CGI_10010913; scaffold1288 TRF Tandem_Repeat 60479 60737 241 + . . scaffold1288 GLEAN mRNA 112357 112404 0.999999 + . ID=CGI_10010915; scaffold1288 TRF Tandem_Repeat 112357 112404 96 + . . scaffold1288 GLEAN mRNA 115063 115389 0.999999 + . ID=CGI_10010915; scaffold1288 TRF Tandem_Repeat 115063 115389 434 + . . scaffold1288 GLEAN mRNA 116594 116870 0.999999 + . ID=CGI_10010915; scaffold1288 TRF Tandem_Repeat 116594 116870 308 + . . scaffold1288 GLEAN mRNA 116580 116695 0.999999 + . ID=CGI_10010915; scaffold1288 TRF Tandem_Repeat 116580 116695 65 + . . scaffold1288 GLEAN mRNA 136519 136821 0.993766 - . ID=CGI_10010916; scaffold1288 TRF Tandem_Repeat 136519 136821 510 + . . scaffold1288 GLEAN mRNA 138351 138722 0.993766 - . ID=CGI_10010916; scaffold1288 TRF Tandem_Repeat 138351 138722 478 + . . scaffold1288 GLEAN mRNA 138351 138733 0.993766 - . ID=CGI_10010916; scaffold1288 TRF Tandem_Repeat 138351 138733 423 + . . scaffold1288 GLEAN mRNA 145539 145754 0.993766 - . ID=CGI_10010916; scaffold1288 TRF Tandem_Repeat 145539 145754 180 + . . scaffold1288 GLEAN mRNA 155863 155934 0.993766 - . ID=CGI_10010916; scaffold1288 TRF Tandem_Repeat 155863 155934 65 + . . scaffold1288 GLEAN mRNA 155863 155934 0.949718 + . ID=CGI_10010917; scaffold1288 TRF Tandem_Repeat 155863 155934 65 + . . scaffold1288 GLEAN mRNA 164678 164985 0.949718 + . ID=CGI_10010917; scaffold1288 TRF Tandem_Repeat 164678 164985 537 + . . scaffold1288 GLEAN mRNA 167279 167578 0.949718 + . ID=CGI_10010917; scaffold1288 TRF Tandem_Repeat 167279 167578 420 + . . scaffold1288 GLEAN mRNA 182314 182362 0.800246 + . ID=CGI_10010918; scaffold1288 TRF Tandem_Repeat 182314 182362 98 + . . scaffold1288 GLEAN mRNA 235952 235987 0.833436 + . ID=CGI_10010923; scaffold1288 TRF Tandem_Repeat 235952 235987 72 + . . scaffold1288 GLEAN mRNA 245166 245303 1 - . ID=CGI_10010924; scaffold1288 TRF Tandem_Repeat 245166 245303 174 + . . scaffold1288 GLEAN mRNA 255275 255563 0.999607 + . ID=CGI_10010925; scaffold1288 TRF Tandem_Repeat 255275 255563 416 + . . scaffold1288 GLEAN mRNA 255275 256003 0.999607 + . ID=CGI_10010925; scaffold1288 TRF Tandem_Repeat 255275 256003 879 + . . scaffold1288 GLEAN mRNA 255566 256003 0.999607 + . ID=CGI_10010925; scaffold1288 TRF Tandem_Repeat 255566 256003 585 + . . scaffold1742 GLEAN mRNA 9856 9886 0.835773 + . ID=CGI_10010929; scaffold1742 TRF Tandem_Repeat 9856 9886 62 + . . scaffold1742 GLEAN mRNA 17889 17927 0.999949 + . ID=CGI_10010930; scaffold1742 TRF Tandem_Repeat 17889 17927 78 + . . scaffold1742 GLEAN mRNA 27708 27741 0.627276 - . ID=CGI_10010931; scaffold1742 TRF Tandem_Repeat 27708 27741 61 + . . scaffold1742 GLEAN mRNA 86359 86431 0.702385 - . ID=CGI_10010933; scaffold1742 TRF Tandem_Repeat 86359 86431 137 + . . scaffold1742 GLEAN mRNA 87907 87950 0.702385 - . ID=CGI_10010933; scaffold1742 TRF Tandem_Repeat 87907 87950 88 + . . scaffold1742 GLEAN mRNA 140235 140597 0.542354 - . ID=CGI_10010934; scaffold1742 WUBlastX DNA_Harbinger 140235 140597 62 - . . scaffold1742 GLEAN mRNA 140734 141108 0.542354 - . ID=CGI_10010934; scaffold1742 WUBlastX DNA_Harbinger 140734 141108 127 - . . scaffold1742 GLEAN mRNA 140366 141202 0.542354 - . ID=CGI_10010934; scaffold1742 WUBlastX DNA_Harbinger 140366 141202 79 - . . scaffold1742 GLEAN mRNA 175353 175451 0.444033 + . ID=CGI_10010937; scaffold1742 TRF Tandem_Repeat 175353 175451 144 + . . scaffold1742 GLEAN mRNA 193126 193410 0.674548 + . ID=CGI_10010940; scaffold1742 TRF Tandem_Repeat 193126 193410 419 + . . scaffold1742 GLEAN mRNA 200115 200314 0.674548 + . ID=CGI_10010940; scaffold1742 TRF Tandem_Repeat 200115 200314 382 + . . scaffold1742 GLEAN mRNA 206893 207104 0.674548 + . ID=CGI_10010940; scaffold1742 TRF Tandem_Repeat 206893 207104 306 + . . scaffold1742 GLEAN mRNA 222830 222885 0.556646 + . ID=CGI_10010941; scaffold1742 TRF Tandem_Repeat 222830 222885 105 + . . scaffold1742 GLEAN mRNA 229918 229996 0.556646 + . ID=CGI_10010941; scaffold1742 TRF Tandem_Repeat 229918 229996 149 + . . scaffold1742 GLEAN mRNA 265839 265912 1 - . ID=CGI_10010947; scaffold1742 TRF Tandem_Repeat 265839 265912 103 + . . scaffold520 GLEAN mRNA 25646 26200 0.984983 + . ID=CGI_10010951; scaffold520 WUBlastX LINE_L1-Tx1 25634 26200 62 + . . scaffold520 GLEAN mRNA 25646 26047 0.984983 + . ID=CGI_10010951; scaffold520 WUBlastX LINE_L1 25547 26047 23 + . . scaffold520 GLEAN mRNA 156801 157451 0.98619 + . ID=CGI_10010955; scaffold520 TRF Tandem_Repeat 156801 157451 759 + . . scaffold520 GLEAN mRNA 160063 160827 0.98619 + . ID=CGI_10010955; scaffold520 WUBlastX LTR_Ngaro 160063 160827 334 + . . scaffold520 GLEAN mRNA 220052 220087 0.691149 - . ID=CGI_10010957; scaffold520 TRF Tandem_Repeat 220052 220087 63 + . . scaffold520 GLEAN mRNA 271366 272700 0.917942 + . ID=CGI_10010959; scaffold520 WUBlastX DNA_Kolobok 271366 272700 88 + . . scaffold449 GLEAN mRNA 60458 60513 0.363705 + . ID=CGI_10010961; scaffold449 TRF Tandem_Repeat 60458 60513 112 + . . scaffold449 GLEAN mRNA 193138 193201 0.558382 - . ID=CGI_10010963; scaffold449 TRF Tandem_Repeat 193138 193201 51 + . . scaffold449 GLEAN mRNA 193271 193394 0.558382 - . ID=CGI_10010963; scaffold449 TRF Tandem_Repeat 193271 193394 59 + . . scaffold449 GLEAN mRNA 193384 193465 0.558382 - . ID=CGI_10010963; scaffold449 TRF Tandem_Repeat 193384 193465 51 + . . scaffold449 GLEAN mRNA 193540 193633 0.558382 - . ID=CGI_10010963; scaffold449 TRF Tandem_Repeat 193540 193633 52 + . . scaffold449 GLEAN mRNA 193586 193679 0.558382 - . ID=CGI_10010963; scaffold449 TRF Tandem_Repeat 193586 193679 72 + . . scaffold449 GLEAN mRNA 193845 193925 0.558382 - . ID=CGI_10010963; scaffold449 TRF Tandem_Repeat 193845 193925 51 + . . scaffold449 GLEAN mRNA 194517 195056 0.558382 - . ID=CGI_10010963; scaffold449 TRF Tandem_Repeat 194517 195056 873 + . . scaffold449 GLEAN mRNA 184691 185533 0.558382 - . ID=CGI_10010963; scaffold449 WUBlastX LINE_CR1-L2 183725 185533 810 - . . scaffold449 GLEAN mRNA 185579 186016 0.558382 - . ID=CGI_10010963; scaffold449 WUBlastX LINE_CR1-L2 185579 186016 119 - . . scaffold449 GLEAN mRNA 184691 185857 0.558382 - . ID=CGI_10010963; scaffold449 WUBlastX LINE_L2 183776 185857 500 - . . scaffold449 GLEAN mRNA 237390 238052 0.999351 - . ID=CGI_10010965; scaffold449 TRF Tandem_Repeat 237390 238052 1019 + . . scaffold449 GLEAN mRNA 249902 250989 0.604931 - . ID=CGI_10010967; scaffold449 TRF Tandem_Repeat 249902 250989 1556 + . . scaffold449 GLEAN mRNA 258553 258770 0.604931 - . ID=CGI_10010967; scaffold449 TRF Tandem_Repeat 258553 258770 267 + . . scaffold449 GLEAN mRNA 262579 262623 0.604931 - . ID=CGI_10010967; scaffold449 TRF Tandem_Repeat 262579 262623 90 + . . scaffold1895 GLEAN mRNA 6161 6203 0.997651 + . ID=CGI_10010968; scaffold1895 TRF Tandem_Repeat 6161 6203 86 + . . scaffold1895 GLEAN mRNA 14560 15588 0.383689 - . ID=CGI_10010969; scaffold1895 TRF Tandem_Repeat 14560 15588 1263 + . . scaffold1895 GLEAN mRNA 32325 32386 0.383689 - . ID=CGI_10010969; scaffold1895 TRF Tandem_Repeat 32325 32386 72 + . . scaffold1895 GLEAN mRNA 22871 23146 0.383689 - . ID=CGI_10010969; scaffold1895 WUBlastX LINE_L1-Tx1 22871 23146 64 + . . scaffold1895 GLEAN mRNA 22871 23002 0.383689 - . ID=CGI_10010969; scaffold1895 WUBlastX LINE_L1-Tx1 22871 23002 68 + . . scaffold1895 GLEAN mRNA 34430 34687 0.383689 - . ID=CGI_10010969; scaffold1895 WUBlastX DNA_PiggyBac 34430 34687 37 - . . scaffold1895 GLEAN mRNA 55713 55829 0.456402 - . ID=CGI_10010973; scaffold1895 TRF Tandem_Repeat 55713 55829 82 + . . scaffold1895 GLEAN mRNA 90128 90261 0.999916 - . ID=CGI_10010977; scaffold1895 TRF Tandem_Repeat 90128 90261 236 + . . scaffold1895 GLEAN mRNA 105166 105558 0.999916 - . ID=CGI_10010977; scaffold1895 TRF Tandem_Repeat 105166 105558 209 + . . scaffold1895 GLEAN mRNA 105166 105558 0.999916 - . ID=CGI_10010977; scaffold1895 TRF Tandem_Repeat 105166 105558 265 + . . scaffold1895 GLEAN mRNA 113067 113290 0.999916 - . ID=CGI_10010977; scaffold1895 TRF Tandem_Repeat 113067 113290 362 + . . scaffold1895 GLEAN mRNA 133039 135228 0.811929 - . ID=CGI_10010979; scaffold1895 TRF Tandem_Repeat 133039 135228 3066 + . . scaffold1895 GLEAN mRNA 133233 135093 0.811929 - . ID=CGI_10010979; scaffold1895 TRF Tandem_Repeat 133233 135093 2872 + . . scaffold1895 GLEAN mRNA 142454 142527 0.811929 - . ID=CGI_10010979; scaffold1895 TRF Tandem_Repeat 142454 142527 70 + . . scaffold1895 GLEAN mRNA 142454 142526 0.811929 - . ID=CGI_10010979; scaffold1895 TRF Tandem_Repeat 142454 142526 73 + . . scaffold1895 GLEAN mRNA 142427 142526 0.811929 - . ID=CGI_10010979; scaffold1895 TRF Tandem_Repeat 142427 142526 91 + . . scaffold1895 GLEAN mRNA 142454 142514 0.811929 - . ID=CGI_10010979; scaffold1895 TRF Tandem_Repeat 142454 142514 72 + . . scaffold1895 GLEAN mRNA 142427 142529 0.811929 - . ID=CGI_10010979; scaffold1895 TRF Tandem_Repeat 142427 142529 59 + . . scaffold1895 GLEAN mRNA 152073 152290 0.811929 - . ID=CGI_10010979; scaffold1895 TRF Tandem_Repeat 152073 152290 337 + . . scaffold1895 GLEAN mRNA 167210 167769 0.811898 + . ID=CGI_10010981; scaffold1895 TRF Tandem_Repeat 167210 167769 714 + . . scaffold1895 GLEAN mRNA 170303 170363 0.811898 + . ID=CGI_10010981; scaffold1895 TRF Tandem_Repeat 170303 170363 104 + . . scaffold1895 GLEAN mRNA 195855 196028 0.585578 - . ID=CGI_10010984; scaffold1895 TRF Tandem_Repeat 195855 196028 321 + . . scaffold1895 GLEAN mRNA 188909 189037 0.585578 - . ID=CGI_10010984; scaffold1895 WUBlastX LINE_RTE-X 188909 189037 73 + . . scaffold1895 GLEAN mRNA 188909 189064 0.585578 - . ID=CGI_10010984; scaffold1895 WUBlastX LINE_RTE-X 188909 189064 47 + . . scaffold1895 GLEAN mRNA 199303 199362 0.585578 - . ID=CGI_10010984; scaffold1895 TRF Tandem_Repeat 199303 199362 113 + . . scaffold1895 GLEAN mRNA 200185 200214 0.585578 - . ID=CGI_10010984; scaffold1895 TRF Tandem_Repeat 200185 200214 51 + . . scaffold1895 GLEAN mRNA 188909 189037 1 + . ID=CGI_10010985; scaffold1895 WUBlastX LINE_RTE-X 188909 189037 73 + . . scaffold1895 GLEAN mRNA 188909 189064 1 + . ID=CGI_10010985; scaffold1895 WUBlastX LINE_RTE-X 188909 189064 47 + . . scaffold1895 GLEAN mRNA 206438 206537 0.703774 + . ID=CGI_10010986; scaffold1895 TRF Tandem_Repeat 206438 206537 94 + . . scaffold1895 GLEAN mRNA 212107 212139 0.703774 + . ID=CGI_10010986; scaffold1895 TRF Tandem_Repeat 212107 212139 66 + . . scaffold1895 GLEAN mRNA 214363 214854 0.703774 + . ID=CGI_10010986; scaffold1895 TRF Tandem_Repeat 214363 214854 314 + . . scaffold1895 GLEAN mRNA 214658 214912 0.703774 + . ID=CGI_10010986; scaffold1895 TRF Tandem_Repeat 214658 214912 456 + . . scaffold1895 GLEAN mRNA 217269 217407 0.703774 + . ID=CGI_10010986; scaffold1895 TRF Tandem_Repeat 217269 217407 224 + . . scaffold1895 GLEAN mRNA 218175 218226 0.703774 + . ID=CGI_10010986; scaffold1895 TRF Tandem_Repeat 218175 218226 104 + . . scaffold1895 GLEAN mRNA 218606 218647 0.703774 + . ID=CGI_10010986; scaffold1895 TRF Tandem_Repeat 218606 218647 84 + . . scaffold482 GLEAN mRNA 42374 43417 0.427398 + . ID=CGI_10010992; scaffold482 WUBlastX DNA_Kolobok-Hyd 42374 43417 36 + . . scaffold482 GLEAN mRNA 42641 42871 0.427398 + . ID=CGI_10010992; scaffold482 WUBlastX DNA_Kolobok-Hyd 42641 42871 40 + . . scaffold482 GLEAN mRNA 42494 42559 0.427398 + . ID=CGI_10010992; scaffold482 WUBlastX DNA_Kolobok-Hyd 42494 42559 45 + . . scaffold482 GLEAN mRNA 57747 57788 0.998956 + . ID=CGI_10010994; scaffold482 TRF Tandem_Repeat 57747 57788 84 + . . scaffold482 GLEAN mRNA 58744 58769 0.998956 + . ID=CGI_10010994; scaffold482 TRF Tandem_Repeat 58744 58769 52 + . . scaffold482 GLEAN mRNA 94119 94154 0.999999 - . ID=CGI_10010995; scaffold482 TRF Tandem_Repeat 94119 94154 54 + . . scaffold482 GLEAN mRNA 94648 95066 0.999999 - . ID=CGI_10010995; scaffold482 TRF Tandem_Repeat 94648 95066 422 + . . scaffold482 GLEAN mRNA 99045 99083 0.999999 - . ID=CGI_10010995; scaffold482 TRF Tandem_Repeat 99045 99083 78 + . . scaffold482 GLEAN mRNA 110670 110706 0.887892 + . ID=CGI_10010996; scaffold482 TRF Tandem_Repeat 110670 110706 74 + . . scaffold482 GLEAN mRNA 113642 113671 0.887892 + . ID=CGI_10010996; scaffold482 TRF Tandem_Repeat 113642 113671 51 + . . scaffold482 GLEAN mRNA 112751 113431 0.887892 + . ID=CGI_10010996; scaffold482 WUBlastX LINE_RTE-X 112751 113431 37 - . . scaffold482 GLEAN mRNA 113198 113401 0.887892 + . ID=CGI_10010996; scaffold482 WUBlastX LINE_RTE-X 113198 113401 51 - . . scaffold482 GLEAN mRNA 113412 113603 0.887892 + . ID=CGI_10010996; scaffold482 WUBlastX LINE_RTE-X 113412 113603 27 - . . scaffold482 GLEAN mRNA 112657 112737 0.887892 + . ID=CGI_10010996; scaffold482 WUBlastX LINE_RTE-X 112657 112737 29 - . . scaffold482 GLEAN mRNA 188453 188971 1 + . ID=CGI_10011000; scaffold482 WUBlastX DNA_IS4EU 188453 188971 74 + . . scaffold482 GLEAN mRNA 188657 188971 1 + . ID=CGI_10011000; scaffold482 WUBlastX DNA_IS4EU 188657 188971 120 + . . scaffold308 GLEAN mRNA 107345 107390 0.990769 - . ID=CGI_10011007; scaffold308 TRF Tandem_Repeat 107345 107390 67 + . . scaffold308 GLEAN mRNA 107342 107395 0.990769 - . ID=CGI_10011007; scaffold308 TRF Tandem_Repeat 107342 107395 67 + . . scaffold308 GLEAN mRNA 102451 102801 0.990769 - . ID=CGI_10011007; scaffold308 WUBlastX DNA_hAT-Tip100 102451 102801 147 - . . scaffold308 GLEAN mRNA 102734 103567 0.990769 - . ID=CGI_10011007; scaffold308 WUBlastX DNA_hAT-Tip100 102734 103567 181 - . . scaffold308 GLEAN mRNA 103776 104192 0.990769 - . ID=CGI_10011007; scaffold308 WUBlastX DNA_hAT-Tip100 103776 104192 159 - . . scaffold308 GLEAN mRNA 103519 103716 0.990769 - . ID=CGI_10011007; scaffold308 WUBlastX DNA_hAT 103519 103716 100 - . . scaffold308 GLEAN mRNA 102400 102711 0.990769 - . ID=CGI_10011007; scaffold308 WUBlastX DNA_hAT-Tip100 102400 102711 100 - . . scaffold308 GLEAN mRNA 103710 104438 0.990769 - . ID=CGI_10011007; scaffold308 WUBlastX DNA_hAT-Tip100 103710 104438 141 - . . scaffold308 GLEAN mRNA 153641 153681 0.777738 + . ID=CGI_10011010; scaffold308 TRF Tandem_Repeat 153641 153681 82 + . . scaffold308 GLEAN mRNA 250418 250642 0.999372 + . ID=CGI_10011014; scaffold308 WUBlastX DNA_TcMar-Fot1 250366 250782 50 - . . scaffold43552 GLEAN mRNA 140688 140743 0.267048 + . ID=CGI_10011019; scaffold43552 TRF Tandem_Repeat 140688 140743 62 + . . scaffold43552 GLEAN mRNA 140685 140739 0.267048 + . ID=CGI_10011019; scaffold43552 TRF Tandem_Repeat 140685 140739 56 + . . scaffold43552 GLEAN mRNA 177389 177465 0.889887 - . ID=CGI_10011020; scaffold43552 TRF Tandem_Repeat 177389 177465 154 + . . scaffold43552 GLEAN mRNA 211786 211812 0.574406 + . ID=CGI_10011022; scaffold43552 TRF Tandem_Repeat 211786 211812 54 + . . scaffold43552 GLEAN mRNA 208701 208838 0.574406 + . ID=CGI_10011022; scaffold43552 WUBlastX DNA_Sola 208701 208838 63 - . . scaffold43552 GLEAN mRNA 207953 208138 0.574406 + . ID=CGI_10011022; scaffold43552 WUBlastX DNA_Sola 207953 208138 38 - . . scaffold43552 GLEAN mRNA 211786 211812 0.829194 - . ID=CGI_10011023; scaffold43552 TRF Tandem_Repeat 211786 211812 54 + . . scaffold43552 GLEAN mRNA 208701 208838 0.829194 - . ID=CGI_10011023; scaffold43552 WUBlastX DNA_Sola 208701 208838 63 - . . scaffold43552 GLEAN mRNA 207953 208138 0.829194 - . ID=CGI_10011023; scaffold43552 WUBlastX DNA_Sola 207953 208138 38 - . . scaffold43552 GLEAN mRNA 221461 222729 0.829194 - . ID=CGI_10011023; scaffold43552 WUBlastX LTR_Gypsy 221461 222729 373 - . . scaffold43552 GLEAN mRNA 226728 227303 0.829194 - . ID=CGI_10011023; scaffold43552 WUBlastX LTR_Gypsy 226728 227303 143 - . . scaffold43552 GLEAN mRNA 221662 223950 0.829194 - . ID=CGI_10011023; scaffold43552 WUBlastX LTR_Gypsy-Cigr 221662 223950 873 - . . scaffold43552 GLEAN mRNA 221437 221568 0.829194 - . ID=CGI_10011023; scaffold43552 WUBlastX LTR_Copia 221437 221568 20 - . . scaffold43552 GLEAN mRNA 223501 224043 0.829194 - . ID=CGI_10011023; scaffold43552 WUBlastX LTR_Gypsy 223501 224043 135 - . . scaffold43552 GLEAN mRNA 225974 226159 0.829194 - . ID=CGI_10011023; scaffold43552 WUBlastX LTR_Gypsy 225974 226159 22 - . . scaffold43552 GLEAN mRNA 220199 220522 0.829194 - . ID=CGI_10011023; scaffold43552 WUBlastX LINE_CR1 220199 220522 22 - . . scaffold43552 GLEAN mRNA 233532 233588 1 + . ID=CGI_10011025; scaffold43552 TRF Tandem_Repeat 233532 233588 114 + . . scaffold43552 GLEAN mRNA 237341 237386 1 + . ID=CGI_10011025; scaffold43552 TRF Tandem_Repeat 237341 237386 56 + . . scaffold43562 GLEAN mRNA 7994 8041 0.694747 + . ID=CGI_10011029; scaffold43562 TRF Tandem_Repeat 7994 8041 87 + . . scaffold43562 GLEAN mRNA 19274 19315 0.694747 + . ID=CGI_10011029; scaffold43562 TRF Tandem_Repeat 19274 19315 75 + . . scaffold43562 GLEAN mRNA 22298 22327 0.694747 + . ID=CGI_10011029; scaffold43562 TRF Tandem_Repeat 22298 22327 60 + . . scaffold43562 GLEAN mRNA 24270 24321 0.694747 + . ID=CGI_10011029; scaffold43562 TRF Tandem_Repeat 24270 24321 104 + . . scaffold43562 GLEAN mRNA 63526 63571 0.694747 + . ID=CGI_10011029; scaffold43562 TRF Tandem_Repeat 63526 63571 92 + . . scaffold43562 GLEAN mRNA 63080 63223 0.694747 + . ID=CGI_10011029; scaffold43562 WUBlastX LINE_R2-Hero 63080 63223 25 + . . scaffold43562 GLEAN mRNA 62157 62963 0.694747 + . ID=CGI_10011029; scaffold43562 WUBlastX LINE_R2-Hero 62157 62963 115 + . . scaffold43562 GLEAN mRNA 63122 63223 0.694747 + . ID=CGI_10011029; scaffold43562 WUBlastX LINE_R2-Hero 63122 63223 42 + . . scaffold43562 GLEAN mRNA 105220 106114 0.54219 + . ID=CGI_10011030; scaffold43562 TRF Tandem_Repeat 105220 106114 1521 + . . scaffold43562 GLEAN mRNA 117977 118065 0.54219 + . ID=CGI_10011030; scaffold43562 TRF Tandem_Repeat 117977 118065 178 + . . scaffold43562 GLEAN mRNA 124468 124543 0.54219 + . ID=CGI_10011030; scaffold43562 TRF Tandem_Repeat 124468 124543 152 + . . scaffold43562 GLEAN mRNA 117977 118065 0.991365 - . ID=CGI_10011032; scaffold43562 TRF Tandem_Repeat 117977 118065 178 + . . scaffold43562 GLEAN mRNA 124468 124543 0.91935 - . ID=CGI_10011033; scaffold43562 TRF Tandem_Repeat 124468 124543 152 + . . scaffold43562 GLEAN mRNA 131727 131829 0.91935 - . ID=CGI_10011033; scaffold43562 TRF Tandem_Repeat 131727 131829 199 + . . scaffold43562 GLEAN mRNA 132426 134471 0.91935 - . ID=CGI_10011033; scaffold43562 WUBlastX LINE_RTE-X 132426 134471 1323 - . . scaffold43562 GLEAN mRNA 132303 132968 0.91935 - . ID=CGI_10011033; scaffold43562 WUBlastX LINE_RTE-X 132303 132968 103 - . . scaffold43562 GLEAN mRNA 147650 147680 0.999236 + . ID=CGI_10011034; scaffold43562 TRF Tandem_Repeat 147650 147680 53 + . . scaffold43562 GLEAN mRNA 172478 172557 0.944081 - . ID=CGI_10011037; scaffold43562 TRF Tandem_Repeat 172478 172557 144 + . . scaffold43562 GLEAN mRNA 172926 173200 0.944081 - . ID=CGI_10011037; scaffold43562 TRF Tandem_Repeat 172926 173200 268 + . . scaffold43562 GLEAN mRNA 168288 168722 0.944081 - . ID=CGI_10011037; scaffold43562 WUBlastX DNA_TcMar-Tc1 168288 168722 64 + . . scaffold43562 GLEAN mRNA 167038 167133 0.944081 - . ID=CGI_10011037; scaffold43562 WUBlastX LINE_CR1 167038 167133 34 + . . scaffold43562 GLEAN mRNA 167151 167594 0.944081 - . ID=CGI_10011037; scaffold43562 WUBlastX LINE_CR1 167151 167594 193 + . . scaffold43562 GLEAN mRNA 167014 167130 0.944081 - . ID=CGI_10011037; scaffold43562 WUBlastX LINE_CR1 167014 167130 33 + . . scaffold43562 GLEAN mRNA 167148 167780 0.944081 - . ID=CGI_10011037; scaffold43562 WUBlastX LINE_CR1 167148 167780 180 + . . scaffold43562 GLEAN mRNA 169089 169313 0.944081 - . ID=CGI_10011037; scaffold43562 WUBlastX DNA_TcMar-Tc1 169089 169313 115 + . . scaffold43562 GLEAN mRNA 168745 169059 0.944081 - . ID=CGI_10011037; scaffold43562 WUBlastX DNA_TcMar-Tc1 168745 169059 98 + . . scaffold43562 GLEAN mRNA 169062 169355 0.944081 - . ID=CGI_10011037; scaffold43562 WUBlastX DNA_TcMar-Tc1 169062 169355 56 + . . scaffold43562 GLEAN mRNA 168065 168163 0.944081 - . ID=CGI_10011037; scaffold43562 WUBlastX DNA_TcMar-Marin 168065 168163 20 + . . scaffold43562 GLEAN mRNA 172478 172557 0.999676 + . ID=CGI_10011038; scaffold43562 TRF Tandem_Repeat 172478 172557 144 + . . scaffold43562 GLEAN mRNA 172926 173200 0.999676 + . ID=CGI_10011038; scaffold43562 TRF Tandem_Repeat 172926 173200 268 + . . scaffold43562 GLEAN mRNA 168288 168722 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Tc1 168288 168722 64 + . . scaffold43562 GLEAN mRNA 167038 167133 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX LINE_CR1 167038 167133 34 + . . scaffold43562 GLEAN mRNA 167151 167594 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX LINE_CR1 167151 167594 193 + . . scaffold43562 GLEAN mRNA 167014 167130 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX LINE_CR1 167014 167130 33 + . . scaffold43562 GLEAN mRNA 167148 167780 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX LINE_CR1 167148 167780 180 + . . scaffold43562 GLEAN mRNA 169089 169313 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Tc1 169089 169313 115 + . . scaffold43562 GLEAN mRNA 168745 169059 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Tc1 168745 169059 98 + . . scaffold43562 GLEAN mRNA 169062 169355 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Tc1 169062 169355 56 + . . scaffold43562 GLEAN mRNA 168065 168163 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX DNA_TcMar-Marin 168065 168163 20 + . . scaffold43562 GLEAN mRNA 219848 219887 0.999286 + . ID=CGI_10011046; scaffold43562 TRF Tandem_Repeat 219848 219887 80 + . . scaffold43562 GLEAN mRNA 235836 235903 0.999675 - . ID=CGI_10011047; scaffold43562 TRF Tandem_Repeat 235836 235903 118 + . . scaffold43562 GLEAN mRNA 236416 236487 0.999675 - . ID=CGI_10011047; scaffold43562 TRF Tandem_Repeat 236416 236487 126 + . . scaffold43562 GLEAN mRNA 239336 239391 0.999675 - . ID=CGI_10011047; scaffold43562 TRF Tandem_Repeat 239336 239391 112 + . . scaffold43562 GLEAN mRNA 243973 244016 0.999675 - . ID=CGI_10011047; scaffold43562 TRF Tandem_Repeat 243973 244016 88 + . . scaffold194 GLEAN mRNA 89628 89708 0.864939 + . ID=CGI_10011059; scaffold194 TRF Tandem_Repeat 89628 89708 162 + . . scaffold194 GLEAN mRNA 92658 93170 0.864939 + . ID=CGI_10011059; scaffold194 WUBlastX LINE_Penelope 92658 93170 45 + . . scaffold194 GLEAN mRNA 92766 93152 0.864939 + . ID=CGI_10011059; scaffold194 WUBlastX LINE_Penelope 92766 93152 66 + . . scaffold194 GLEAN mRNA 94729 95004 0.864939 + . ID=CGI_10011059; scaffold194 WUBlastX LTR_Gypsy 94729 95004 87 + . . scaffold194 GLEAN mRNA 95896 96330 0.864939 + . ID=CGI_10011059; scaffold194 WUBlastX LTR_Gypsy 95896 96330 244 + . . scaffold194 GLEAN mRNA 96338 98047 0.864939 + . ID=CGI_10011059; scaffold194 WUBlastX LTR_Gypsy 96338 98047 1420 + . . scaffold194 GLEAN mRNA 113308 113333 0.616811 - . ID=CGI_10011060; scaffold194 TRF Tandem_Repeat 113308 113333 52 + . . scaffold194 GLEAN mRNA 117100 117346 0.616811 - . ID=CGI_10011060; scaffold194 TRF Tandem_Repeat 117100 117346 467 + . . scaffold194 GLEAN mRNA 121066 121401 0.616811 - . ID=CGI_10011060; scaffold194 TRF Tandem_Repeat 121066 121401 246 + . . scaffold194 GLEAN mRNA 121019 121385 0.616811 - . ID=CGI_10011060; scaffold194 TRF Tandem_Repeat 121019 121385 521 + . . scaffold194 GLEAN mRNA 120970 121358 0.616811 - . ID=CGI_10011060; scaffold194 TRF Tandem_Repeat 120970 121358 147 + . . scaffold194 GLEAN mRNA 131780 132417 0.992892 - . ID=CGI_10011063; scaffold194 TRF Tandem_Repeat 131780 132417 755 + . . scaffold194 GLEAN mRNA 152197 153439 0.434209 - . ID=CGI_10011064; scaffold194 TRF Tandem_Repeat 152197 153439 1382 + . . scaffold194 GLEAN mRNA 156338 156527 0.434209 - . ID=CGI_10011064; scaffold194 TRF Tandem_Repeat 156338 156527 233 + . . scaffold194 GLEAN mRNA 158129 158297 0.434209 - . ID=CGI_10011064; scaffold194 TRF Tandem_Repeat 158129 158297 223 + . . scaffold194 GLEAN mRNA 164122 164563 0.434209 - . ID=CGI_10011064; scaffold194 TRF Tandem_Repeat 164122 164563 537 + . . scaffold194 GLEAN mRNA 164000 164593 0.434209 - . ID=CGI_10011064; scaffold194 TRF Tandem_Repeat 164000 164593 663 + . . scaffold194 GLEAN mRNA 206325 206373 0.728723 - . ID=CGI_10011067; scaffold194 TRF Tandem_Repeat 206325 206373 98 + . . scaffold194 GLEAN mRNA 205153 205533 0.728723 - . ID=CGI_10011067; scaffold194 WUBlastX DNA_Sola 205153 205533 35 - . . scaffold194 GLEAN mRNA 206500 207069 0.728723 - . ID=CGI_10011067; scaffold194 WUBlastX DNA_Sola 206500 207129 68 - . . scaffold194 GLEAN mRNA 253756 253805 0.709931 + . ID=CGI_10011068; scaffold194 TRF Tandem_Repeat 253756 253805 100 + . . scaffold194 GLEAN mRNA 255766 255813 0.709931 + . ID=CGI_10011068; scaffold194 TRF Tandem_Repeat 255766 255813 78 + . . scaffold194 GLEAN mRNA 253985 254257 0.709931 + . ID=CGI_10011068; scaffold194 WUBlastX DNA_Harbinger 253985 254257 118 - . . scaffold194 GLEAN mRNA 254269 254337 0.709931 + . ID=CGI_10011068; scaffold194 WUBlastX DNA_Harbinger 254269 254337 65 - . . scaffold194 GLEAN mRNA 260953 261225 0.709931 + . ID=CGI_10011068; scaffold194 WUBlastX DNA_Crypton 260953 261225 48 - . . scaffold194 GLEAN mRNA 270484 270531 0.709931 + . ID=CGI_10011068; scaffold194 TRF Tandem_Repeat 270484 270531 96 + . . scaffold194 GLEAN mRNA 273120 273767 0.709931 + . ID=CGI_10011068; scaffold194 WUBlastX RC_Helitron 273120 273767 155 - . . scaffold194 GLEAN mRNA 273120 273767 0.464633 - . ID=CGI_10011069; scaffold194 WUBlastX RC_Helitron 273120 273767 155 - . . scaffold123 GLEAN mRNA 54913 54952 0.447664 - . ID=CGI_10011071; scaffold123 TRF Tandem_Repeat 54913 54952 53 + . . scaffold123 GLEAN mRNA 112286 113203 0.996632 - . ID=CGI_10011073; scaffold123 TRF Tandem_Repeat 112286 113203 635 + . . scaffold123 GLEAN mRNA 112295 113109 0.996632 - . ID=CGI_10011073; scaffold123 TRF Tandem_Repeat 112295 113109 853 + . . scaffold123 GLEAN mRNA 127990 128065 0.466419 + . ID=CGI_10011074; scaffold123 TRF Tandem_Repeat 127990 128065 152 + . . scaffold123 GLEAN mRNA 129161 129196 0.466419 + . ID=CGI_10011074; scaffold123 TRF Tandem_Repeat 129161 129196 72 + . . scaffold123 GLEAN mRNA 130085 130218 0.466419 + . ID=CGI_10011074; scaffold123 TRF Tandem_Repeat 130085 130218 124 + . . scaffold123 GLEAN mRNA 130551 130580 0.466419 + . ID=CGI_10011074; scaffold123 TRF Tandem_Repeat 130551 130580 51 + . . scaffold123 GLEAN mRNA 134806 134858 0.466419 + . ID=CGI_10011074; scaffold123 TRF Tandem_Repeat 134806 134858 106 + . . scaffold917 GLEAN mRNA 23457 23503 0.98965 + . ID=CGI_10011082; scaffold917 TRF Tandem_Repeat 23457 23503 94 + . . scaffold917 GLEAN mRNA 26392 26432 0.98965 + . ID=CGI_10011082; scaffold917 TRF Tandem_Repeat 26392 26432 82 + . . scaffold917 GLEAN mRNA 27448 27479 0.98965 + . ID=CGI_10011082; scaffold917 TRF Tandem_Repeat 27448 27479 55 + . . scaffold917 GLEAN mRNA 122615 122640 0.227919 + . ID=CGI_10011083; scaffold917 TRF Tandem_Repeat 122615 122640 52 + . . scaffold917 GLEAN mRNA 132093 132138 0.227919 + . ID=CGI_10011083; scaffold917 TRF Tandem_Repeat 132093 132138 83 + . . scaffold917 GLEAN mRNA 136154 136428 0.227919 + . ID=CGI_10011083; scaffold917 TRF Tandem_Repeat 136154 136428 252 + . . scaffold917 GLEAN mRNA 141621 141839 0.227919 + . ID=CGI_10011083; scaffold917 TRF Tandem_Repeat 141621 141839 368 + . . scaffold917 GLEAN mRNA 135213 135728 0.227919 + . ID=CGI_10011083; scaffold917 WUBlastX DNA_Sola 135213 135728 155 + . . scaffold917 GLEAN mRNA 134339 134881 0.227919 + . ID=CGI_10011083; scaffold917 WUBlastX DNA_Sola 134339 134881 303 + . . scaffold917 GLEAN mRNA 148880 149065 0.227919 + . ID=CGI_10011083; scaffold917 WUBlastX DNA_IS4EU 148880 149065 98 + . . scaffold917 GLEAN mRNA 149169 149921 0.227919 + . ID=CGI_10011083; scaffold917 WUBlastX DNA_Kolobok-IS4 149169 149921 322 - . . scaffold917 GLEAN mRNA 148533 148595 0.227919 + . ID=CGI_10011083; scaffold917 WUBlastX DNA_IS4EU 148533 148595 30 + . . scaffold917 GLEAN mRNA 151304 151366 0.207364 - . ID=CGI_10011084; scaffold917 TRF Tandem_Repeat 151304 151366 126 + . . scaffold917 GLEAN mRNA 162383 162568 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX LINE_L2 162383 162568 46 + . . scaffold917 GLEAN mRNA 151372 151818 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX DNA_Crypton 151372 151818 49 - . . scaffold917 GLEAN mRNA 162075 162368 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX LINE_CR1-L2 162075 162368 98 + . . scaffold917 GLEAN mRNA 154104 154217 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX DNA_Harbinger 154104 154217 122 + . . scaffold917 GLEAN mRNA 154620 154829 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX DNA_Harbinger 154620 154829 134 + . . scaffold917 GLEAN mRNA 155076 155267 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX DNA_Harbinger 155076 155267 54 + . . scaffold917 GLEAN mRNA 155058 155315 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX DNA_Harbinger 155058 155315 21 + . . scaffold917 GLEAN mRNA 154683 154859 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX DNA_Harbinger 154683 154859 48 + . . scaffold917 GLEAN mRNA 161916 162362 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX LINE_L1 161916 162362 66 + . . scaffold917 GLEAN mRNA 154430 154546 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX DNA_Harbinger 154430 154546 41 + . . scaffold917 GLEAN mRNA 164060 164139 0.207364 - . ID=CGI_10011084; scaffold917 TRF Tandem_Repeat 164060 164139 52 + . . scaffold917 GLEAN mRNA 172677 172850 0.207364 - . ID=CGI_10011084; scaffold917 TRF Tandem_Repeat 172677 172850 208 + . . scaffold917 GLEAN mRNA 177161 177330 0.207364 - . ID=CGI_10011084; scaffold917 TRF Tandem_Repeat 177161 177330 277 + . . scaffold917 GLEAN mRNA 178895 178933 0.207364 - . ID=CGI_10011084; scaffold917 TRF Tandem_Repeat 178895 178933 78 + . . scaffold917 GLEAN mRNA 178939 179385 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX DNA_Crypton 178939 179385 48 - . . scaffold917 GLEAN mRNA 175485 175619 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX LINE_RTE-X 175485 175619 34 - . . scaffold917 GLEAN mRNA 175652 175738 0.207364 - . ID=CGI_10011084; scaffold917 WUBlastX LINE_RTE-X 175652 175738 50 - . . scaffold917 GLEAN mRNA 191593 192624 0.276773 + . ID=CGI_10011087; scaffold917 TRF Tandem_Repeat 191593 192624 1411 + . . scaffold917 GLEAN mRNA 198243 198536 0.276773 + . ID=CGI_10011087; scaffold917 TRF Tandem_Repeat 198243 198536 516 + . . scaffold917 GLEAN mRNA 203904 204183 0.276773 + . ID=CGI_10011087; scaffold917 TRF Tandem_Repeat 203904 204183 261 + . . scaffold917 GLEAN mRNA 204999 205055 0.276773 + . ID=CGI_10011087; scaffold917 TRF Tandem_Repeat 204999 205055 114 + . . scaffold917 GLEAN mRNA 205708 206089 0.276773 + . ID=CGI_10011087; scaffold917 TRF Tandem_Repeat 205708 206089 665 + . . scaffold917 GLEAN mRNA 207322 207655 0.276773 + . ID=CGI_10011087; scaffold917 TRF Tandem_Repeat 207322 207655 507 + . . scaffold917 GLEAN mRNA 208200 208251 0.276773 + . ID=CGI_10011087; scaffold917 TRF Tandem_Repeat 208200 208251 52 + . . scaffold917 GLEAN mRNA 217960 218290 1 - . ID=CGI_10011088; scaffold917 TRF Tandem_Repeat 217960 218290 527 + . . scaffold917 GLEAN mRNA 219204 219707 1 - . ID=CGI_10011088; scaffold917 TRF Tandem_Repeat 219204 219707 796 + . . scaffold917 GLEAN mRNA 219891 220095 1 - . ID=CGI_10011088; scaffold917 TRF Tandem_Repeat 219891 220095 304 + . . scaffold917 GLEAN mRNA 219889 220585 1 - . ID=CGI_10011088; scaffold917 TRF Tandem_Repeat 219889 220585 465 + . . scaffold917 GLEAN mRNA 222578 222625 1 - . ID=CGI_10011088; scaffold917 TRF Tandem_Repeat 222578 222625 89 + . . scaffold917 GLEAN mRNA 274649 274710 1 + . ID=CGI_10011091; scaffold917 TRF Tandem_Repeat 274649 274710 117 + . . scaffold340 GLEAN mRNA 1441 1486 0.972254 - . ID=CGI_10011093; scaffold340 TRF Tandem_Repeat 1441 1486 92 + . . scaffold340 GLEAN mRNA 11734 11773 0.972254 - . ID=CGI_10011093; scaffold340 TRF Tandem_Repeat 11734 11773 80 + . . scaffold340 GLEAN mRNA 40195 40238 0.296118 - . ID=CGI_10011095; scaffold340 TRF Tandem_Repeat 40195 40238 72 + . . scaffold340 GLEAN mRNA 51357 51396 0.296118 - . ID=CGI_10011095; scaffold340 TRF Tandem_Repeat 51357 51396 80 + . . scaffold340 GLEAN mRNA 55632 55918 0.999617 - . ID=CGI_10011096; scaffold340 TRF Tandem_Repeat 55632 55918 231 + . . scaffold340 GLEAN mRNA 79436 79472 1 + . ID=CGI_10011097; scaffold340 TRF Tandem_Repeat 79436 79472 65 + . . scaffold340 GLEAN mRNA 166665 167476 0.999624 + . ID=CGI_10011101; scaffold340 TRF Tandem_Repeat 166665 167476 1270 + . . scaffold340 GLEAN mRNA 181779 181830 0.999959 + . ID=CGI_10011102; scaffold340 TRF Tandem_Repeat 181779 181830 104 + . . scaffold340 GLEAN mRNA 189589 189957 0.999998 + . ID=CGI_10011103; scaffold340 WUBlastX LINE_L1 189589 189957 22 + . . scaffold340 GLEAN mRNA 218538 219605 0.984022 - . ID=CGI_10011108; scaffold340 WUBlastX DNA_IS4EU 218538 219605 307 + . . scaffold340 GLEAN mRNA 230588 230673 0.933865 - . ID=CGI_10011109; scaffold340 TRF Tandem_Repeat 230588 230673 91 + . . scaffold340 GLEAN mRNA 230739 230959 0.933865 - . ID=CGI_10011109; scaffold340 TRF Tandem_Repeat 230739 230959 173 + . . scaffold340 GLEAN mRNA 230739 230931 0.933865 - . ID=CGI_10011109; scaffold340 TRF Tandem_Repeat 230739 230931 237 + . . scaffold340 GLEAN mRNA 230739 230958 0.933865 - . ID=CGI_10011109; scaffold340 TRF Tandem_Repeat 230739 230958 219 + . . scaffold340 GLEAN mRNA 230958 231094 0.933865 - . ID=CGI_10011109; scaffold340 TRF Tandem_Repeat 230958 231094 125 + . . scaffold340 GLEAN mRNA 233275 233311 0.933865 - . ID=CGI_10011109; scaffold340 TRF Tandem_Repeat 233275 233311 74 + . . scaffold340 GLEAN mRNA 253968 254633 0.918941 + . ID=CGI_10011112; scaffold340 TRF Tandem_Repeat 253968 254633 926 + . . scaffold340 GLEAN mRNA 256742 256818 0.918941 + . ID=CGI_10011112; scaffold340 TRF Tandem_Repeat 256742 256818 136 + . . scaffold88 GLEAN mRNA 8381 8514 0.394344 + . ID=CGI_10011114; scaffold88 TRF Tandem_Repeat 8381 8514 223 + . . scaffold88 GLEAN mRNA 5569 5904 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_hAT-Tip100 5569 5904 39 + . . scaffold88 GLEAN mRNA 5680 5856 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_hAT-Tip100 5680 5856 58 + . . scaffold88 GLEAN mRNA 5647 5862 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_hAT-Tip100 5647 5862 56 + . . scaffold88 GLEAN mRNA 8050 8151 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_hAT-Tip100 8050 8151 28 + . . scaffold88 GLEAN mRNA 6003 6401 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_hAT-Tip100 6003 6401 101 + . . scaffold88 GLEAN mRNA 6380 6748 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_hAT-Tip100 6380 6748 113 + . . scaffold88 GLEAN mRNA 5650 5964 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_hAT-Tip100 5650 5964 53 + . . scaffold88 GLEAN mRNA 7832 7924 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_hAT-Tip100 7832 7924 30 + . . scaffold88 GLEAN mRNA 17351 17387 0.394344 + . ID=CGI_10011114; scaffold88 TRF Tandem_Repeat 17351 17387 74 + . . scaffold88 GLEAN mRNA 23524 24081 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1-Tx1 23524 24081 36 - . . scaffold88 GLEAN mRNA 23073 23507 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 23073 23507 32 - . . scaffold88 GLEAN mRNA 18330 19220 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_TcMar-Tc1 18330 19220 388 - . . scaffold88 GLEAN mRNA 25372 26298 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 25372 26298 307 - . . scaffold88 GLEAN mRNA 26382 26696 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 26382 26696 63 - . . scaffold88 GLEAN mRNA 19238 19369 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_TcMar-Tc1 19238 19369 37 - . . scaffold88 GLEAN mRNA 23145 23516 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1-Tx1 23145 23516 51 - . . scaffold88 GLEAN mRNA 24134 24529 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1-Tx1 24134 24529 143 - . . scaffold88 GLEAN mRNA 26382 26603 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 26382 26603 87 - . . scaffold88 GLEAN mRNA 25561 26424 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX LINE_L1 25561 26424 579 - . . scaffold88 GLEAN mRNA 19238 19399 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_TcMar-Marin 19238 19399 35 - . . scaffold88 GLEAN mRNA 23524 24081 0.444301 - . ID=CGI_10011115; scaffold88 WUBlastX LINE_L1-Tx1 23524 24081 36 - . . scaffold88 GLEAN mRNA 23073 23507 0.444301 - . ID=CGI_10011115; scaffold88 WUBlastX LINE_L1 23073 23507 32 - . . scaffold88 GLEAN mRNA 25372 26298 0.444301 - . ID=CGI_10011115; scaffold88 WUBlastX LINE_L1 25372 26298 307 - . . scaffold88 GLEAN mRNA 26382 26696 0.444301 - . ID=CGI_10011115; scaffold88 WUBlastX LINE_L1 26382 26696 63 - . . scaffold88 GLEAN mRNA 23145 23516 0.444301 - . ID=CGI_10011115; scaffold88 WUBlastX LINE_L1-Tx1 23145 23516 51 - . . scaffold88 GLEAN mRNA 24134 24529 0.444301 - . ID=CGI_10011115; scaffold88 WUBlastX LINE_L1-Tx1 24134 24529 143 - . . scaffold88 GLEAN mRNA 26382 26603 0.444301 - . ID=CGI_10011115; scaffold88 WUBlastX LINE_L1 26382 26603 87 - . . scaffold88 GLEAN mRNA 25561 26424 0.444301 - . ID=CGI_10011115; scaffold88 WUBlastX LINE_L1 25561 26424 579 - . . scaffold88 GLEAN mRNA 111394 111438 1 - . ID=CGI_10011118; scaffold88 TRF Tandem_Repeat 111394 111438 90 + . . scaffold88 GLEAN mRNA 115341 115529 1 - . ID=CGI_10011119; scaffold88 TRF Tandem_Repeat 115341 115529 141 + . . scaffold88 GLEAN mRNA 245251 245305 0.374385 - . ID=CGI_10011122; scaffold88 TRF Tandem_Repeat 245251 245305 110 + . . scaffold43576 GLEAN mRNA 81653 81702 0.928383 + . ID=CGI_10011130; scaffold43576 TRF Tandem_Repeat 81653 81702 55 + . . scaffold43576 GLEAN mRNA 81701 81742 0.928383 + . ID=CGI_10011130; scaffold43576 TRF Tandem_Repeat 81701 81742 66 + . . scaffold43576 GLEAN mRNA 96025 96062 0.928383 + . ID=CGI_10011130; scaffold43576 TRF Tandem_Repeat 96025 96062 76 + . . scaffold43576 GLEAN mRNA 109773 109805 0.928383 + . ID=CGI_10011130; scaffold43576 TRF Tandem_Repeat 109773 109805 57 + . . scaffold43576 GLEAN mRNA 110897 110933 0.928383 + . ID=CGI_10011130; scaffold43576 TRF Tandem_Repeat 110897 110933 56 + . . scaffold43576 GLEAN mRNA 112613 112660 0.928383 + . ID=CGI_10011130; scaffold43576 TRF Tandem_Repeat 112613 112660 87 + . . scaffold43576 GLEAN mRNA 129110 129162 0.928383 + . ID=CGI_10011130; scaffold43576 TRF Tandem_Repeat 129110 129162 106 + . . scaffold43576 GLEAN mRNA 215851 216090 1 - . ID=CGI_10011134; scaffold43576 WUBlastX DNA_TcMar-Tigge 215851 216090 31 + . . scaffold43576 GLEAN mRNA 215990 216403 1 - . ID=CGI_10011134; scaffold43576 WUBlastX DNA_TcMar-Pogo 215990 216403 102 + . . scaffold43576 GLEAN mRNA 216056 216415 1 - . ID=CGI_10011134; scaffold43576 WUBlastX DNA_TcMar-Pogo 216056 216415 136 + . . scaffold43576 GLEAN mRNA 216131 216418 1 - . ID=CGI_10011134; scaffold43576 WUBlastX DNA_TcMar-Pogo 216131 216418 203 + . . scaffold1825 GLEAN mRNA 62123 63082 0.967566 - . ID=CGI_10011138; scaffold1825 WUBlastX LTR_Gypsy 62123 63082 237 - . . scaffold1825 GLEAN mRNA 58733 62929 0.967566 - . ID=CGI_10011138; scaffold1825 WUBlastX LTR_Gypsy 58733 62929 2299 - . . scaffold1825 GLEAN mRNA 71007 71062 0.999994 + . ID=CGI_10011139; scaffold1825 TRF Tandem_Repeat 71007 71062 103 + . . scaffold1825 GLEAN mRNA 74033 74167 0.95907 - . ID=CGI_10011140; scaffold1825 TRF Tandem_Repeat 74033 74167 137 + . . scaffold1825 GLEAN mRNA 76650 76695 0.721202 - . ID=CGI_10011141; scaffold1825 TRF Tandem_Repeat 76650 76695 92 + . . scaffold1825 GLEAN mRNA 76695 76747 0.721202 - . ID=CGI_10011141; scaffold1825 TRF Tandem_Repeat 76695 76747 106 + . . scaffold1825 GLEAN mRNA 88104 88146 0.999273 + . ID=CGI_10011142; scaffold1825 TRF Tandem_Repeat 88104 88146 86 + . . scaffold1825 GLEAN mRNA 95889 96173 0.430581 + . ID=CGI_10011143; scaffold1825 TRF Tandem_Repeat 95889 96173 455 + . . scaffold1825 GLEAN mRNA 101399 101616 0.430581 + . ID=CGI_10011143; scaffold1825 TRF Tandem_Repeat 101399 101616 373 + . . scaffold1825 GLEAN mRNA 104381 104834 0.430581 + . ID=CGI_10011143; scaffold1825 TRF Tandem_Repeat 104381 104834 836 + . . scaffold1825 GLEAN mRNA 116715 116843 0.999351 - . ID=CGI_10011144; scaffold1825 TRF Tandem_Repeat 116715 116843 114 + . . scaffold1825 GLEAN mRNA 146718 146763 0.790331 + . ID=CGI_10011146; scaffold1825 TRF Tandem_Repeat 146718 146763 56 + . . scaffold1825 GLEAN mRNA 157086 158005 0.790331 + . ID=CGI_10011146; scaffold1825 TRF Tandem_Repeat 157086 158005 1324 + . . scaffold1825 GLEAN mRNA 159785 159835 0.790331 + . ID=CGI_10011146; scaffold1825 WUBlastX LINE_CR1-L2 159785 159835 36 + . . scaffold1825 GLEAN mRNA 158483 159073 0.790331 + . ID=CGI_10011146; scaffold1825 WUBlastX LINE_L1 158483 159073 59 + . . scaffold1825 GLEAN mRNA 159961 160122 0.790331 + . ID=CGI_10011146; scaffold1825 WUBlastX LINE_L2 159961 160122 117 + . . scaffold1825 GLEAN mRNA 160256 160714 0.790331 + . ID=CGI_10011146; scaffold1825 WUBlastX LINE_L2 160256 160714 123 + . . scaffold1825 GLEAN mRNA 158585 159199 0.790331 + . ID=CGI_10011146; scaffold1825 WUBlastX LINE_L2 158585 159199 173 + . . scaffold1825 GLEAN mRNA 159910 160122 0.790331 + . ID=CGI_10011146; scaffold1825 WUBlastX LINE_L2 159910 160122 76 + . . scaffold1825 GLEAN mRNA 171459 172244 0.695303 - . ID=CGI_10011147; scaffold1825 TRF Tandem_Repeat 171459 172244 808 + . . scaffold1825 GLEAN mRNA 175366 175409 0.695303 - . ID=CGI_10011147; scaffold1825 TRF Tandem_Repeat 175366 175409 88 + . . scaffold1825 GLEAN mRNA 175410 175439 0.695303 - . ID=CGI_10011147; scaffold1825 TRF Tandem_Repeat 175410 175439 60 + . . scaffold1825 GLEAN mRNA 166802 167023 0.695303 - . ID=CGI_10011147; scaffold1825 WUBlastX LINE_L2 166802 167023 51 - . . scaffold1825 GLEAN mRNA 166811 167113 0.695303 - . ID=CGI_10011147; scaffold1825 WUBlastX LINE_CR1-L2 166811 167113 43 - . . scaffold1825 GLEAN mRNA 191428 191746 0.58796 + . ID=CGI_10011149; scaffold1825 TRF Tandem_Repeat 191428 191746 355 + . . scaffold1825 GLEAN mRNA 191431 191746 0.58796 + . ID=CGI_10011149; scaffold1825 TRF Tandem_Repeat 191431 191746 292 + . . scaffold1825 GLEAN mRNA 192094 192250 0.58796 + . ID=CGI_10011149; scaffold1825 TRF Tandem_Repeat 192094 192250 269 + . . scaffold1825 GLEAN mRNA 192094 192921 0.58796 + . ID=CGI_10011149; scaffold1825 TRF Tandem_Repeat 192094 192921 331 + . . scaffold1825 GLEAN mRNA 192094 192921 0.58796 + . ID=CGI_10011149; scaffold1825 TRF Tandem_Repeat 192094 192921 370 + . . scaffold1825 GLEAN mRNA 192440 192581 0.58796 + . ID=CGI_10011149; scaffold1825 TRF Tandem_Repeat 192440 192581 92 + . . scaffold1825 GLEAN mRNA 192498 192909 0.58796 + . ID=CGI_10011149; scaffold1825 TRF Tandem_Repeat 192498 192909 206 + . . scaffold1825 GLEAN mRNA 194424 194597 0.58796 + . ID=CGI_10011149; scaffold1825 TRF Tandem_Repeat 194424 194597 107 + . . scaffold1825 GLEAN mRNA 194513 195130 0.58796 + . ID=CGI_10011149; scaffold1825 TRF Tandem_Repeat 194513 195130 784 + . . scaffold1825 GLEAN mRNA 195150 195220 0.58796 + . ID=CGI_10011149; scaffold1825 TRF Tandem_Repeat 195150 195220 88 + . . scaffold1825 GLEAN mRNA 195302 195393 0.58796 + . ID=CGI_10011149; scaffold1825 TRF Tandem_Repeat 195302 195393 69 + . . scaffold1825 GLEAN mRNA 195037 195413 0.58796 + . ID=CGI_10011149; scaffold1825 TRF Tandem_Repeat 195037 195413 240 + . . scaffold285 GLEAN mRNA 22840 22888 0.988929 - . ID=CGI_10011150; scaffold285 TRF Tandem_Repeat 22840 22888 98 + . . scaffold285 GLEAN mRNA 36944 36984 0.499995 - . ID=CGI_10011152; scaffold285 TRF Tandem_Repeat 36944 36984 82 + . . scaffold285 GLEAN mRNA 38194 38233 0.499995 - . ID=CGI_10011152; scaffold285 TRF Tandem_Repeat 38194 38233 80 + . . scaffold285 GLEAN mRNA 59627 60531 0.729885 + . ID=CGI_10011153; scaffold285 TRF Tandem_Repeat 59627 60531 1213 + . . scaffold285 GLEAN mRNA 61702 61888 0.729885 + . ID=CGI_10011153; scaffold285 TRF Tandem_Repeat 61702 61888 61 + . . scaffold285 GLEAN mRNA 61742 61941 0.729885 + . ID=CGI_10011153; scaffold285 TRF Tandem_Repeat 61742 61941 62 + . . scaffold285 GLEAN mRNA 118780 118828 0.998804 + . ID=CGI_10011159; scaffold285 TRF Tandem_Repeat 118780 118828 98 + . . scaffold285 GLEAN mRNA 132475 132615 1 - . ID=CGI_10011160; scaffold285 TRF Tandem_Repeat 132475 132615 257 + . . scaffold285 GLEAN mRNA 160400 160925 0.859929 - . ID=CGI_10011162; scaffold285 TRF Tandem_Repeat 160400 160925 621 + . . scaffold285 GLEAN mRNA 160332 160854 0.859929 - . ID=CGI_10011162; scaffold285 TRF Tandem_Repeat 160332 160854 379 + . . scaffold285 GLEAN mRNA 160643 160806 0.859929 - . ID=CGI_10011162; scaffold285 TRF Tandem_Repeat 160643 160806 161 + . . scaffold285 GLEAN mRNA 160790 161085 0.859929 - . ID=CGI_10011162; scaffold285 TRF Tandem_Repeat 160790 161085 175 + . . scaffold285 GLEAN mRNA 160790 161085 0.859929 - . ID=CGI_10011162; scaffold285 TRF Tandem_Repeat 160790 161085 281 + . . scaffold285 GLEAN mRNA 160676 161041 0.859929 - . ID=CGI_10011162; scaffold285 TRF Tandem_Repeat 160676 161041 447 + . . scaffold285 GLEAN mRNA 165136 165185 0.859929 - . ID=CGI_10011162; scaffold285 TRF Tandem_Repeat 165136 165185 100 + . . scaffold1382 GLEAN mRNA 27806 27899 0.905952 + . ID=CGI_10011169; scaffold1382 TRF Tandem_Repeat 27806 27899 152 + . . scaffold1382 GLEAN mRNA 37786 37825 0.991043 + . ID=CGI_10011171; scaffold1382 TRF Tandem_Repeat 37786 37825 80 + . . scaffold1382 GLEAN mRNA 117244 117674 0.812933 - . ID=CGI_10011173; scaffold1382 TRF Tandem_Repeat 117244 117674 727 + . . scaffold1382 GLEAN mRNA 120278 120323 0.812933 - . ID=CGI_10011173; scaffold1382 TRF Tandem_Repeat 120278 120323 56 + . . scaffold1382 GLEAN mRNA 122709 122759 0.812933 - . ID=CGI_10011173; scaffold1382 TRF Tandem_Repeat 122709 122759 102 + . . scaffold1382 GLEAN mRNA 122945 122977 0.812933 - . ID=CGI_10011173; scaffold1382 TRF Tandem_Repeat 122945 122977 66 + . . scaffold1382 GLEAN mRNA 122975 123018 0.812933 - . ID=CGI_10011173; scaffold1382 TRF Tandem_Repeat 122975 123018 88 + . . scaffold1382 GLEAN mRNA 123513 123572 0.812933 - . ID=CGI_10011173; scaffold1382 TRF Tandem_Repeat 123513 123572 66 + . . scaffold1382 GLEAN mRNA 128768 128806 0.812933 - . ID=CGI_10011173; scaffold1382 TRF Tandem_Repeat 128768 128806 60 + . . scaffold1382 GLEAN mRNA 138525 138614 0.812933 - . ID=CGI_10011173; scaffold1382 TRF Tandem_Repeat 138525 138614 94 + . . scaffold1382 GLEAN mRNA 139814 139873 0.812933 - . ID=CGI_10011173; scaffold1382 TRF Tandem_Repeat 139814 139873 57 + . . scaffold1382 GLEAN mRNA 140487 140769 0.812933 - . ID=CGI_10011173; scaffold1382 TRF Tandem_Repeat 140487 140769 128 + . . scaffold1382 GLEAN mRNA 138692 139549 0.812933 - . ID=CGI_10011173; scaffold1382 WUBlastX LINE_RTE-X 138692 139549 248 + . . scaffold1382 GLEAN mRNA 139337 139606 0.812933 - . ID=CGI_10011173; scaffold1382 WUBlastX LINE_RTE-X 139337 139606 86 + . . scaffold1382 GLEAN mRNA 138632 139027 0.812933 - . ID=CGI_10011173; scaffold1382 WUBlastX LINE_CR1 138632 139027 70 + . . scaffold1382 GLEAN mRNA 166726 166843 0.9108 + . ID=CGI_10011174; scaffold1382 TRF Tandem_Repeat 166726 166843 146 + . . scaffold1382 GLEAN mRNA 178419 178835 0.814037 + . ID=CGI_10011175; scaffold1382 TRF Tandem_Repeat 178419 178835 595 + . . scaffold1382 GLEAN mRNA 178434 178642 0.814037 + . ID=CGI_10011175; scaffold1382 TRF Tandem_Repeat 178434 178642 88 + . . scaffold1382 GLEAN mRNA 226474 228025 0.974072 - . ID=CGI_10011177; scaffold1382 TRF Tandem_Repeat 226474 228025 2518 + . . scaffold1382 GLEAN mRNA 226703 228025 0.974072 - . ID=CGI_10011177; scaffold1382 TRF Tandem_Repeat 226703 228025 2293 + . . scaffold1382 GLEAN mRNA 225971 228025 0.974072 - . ID=CGI_10011177; scaffold1382 TRF Tandem_Repeat 225971 228025 3397 + . . scaffold1382 GLEAN mRNA 219830 219946 0.974072 - . ID=CGI_10011177; scaffold1382 WUBlastX DNA_Harbinger 219830 219946 37 + . . scaffold1382 GLEAN mRNA 218920 219264 0.974072 - . ID=CGI_10011177; scaffold1382 WUBlastX DNA_Harbinger 218920 219264 170 + . . scaffold1382 GLEAN mRNA 217967 218074 0.974072 - . ID=CGI_10011177; scaffold1382 WUBlastX DNA_Harbinger 217967 218074 21 + . . scaffold1382 GLEAN mRNA 219353 219634 0.974072 - . ID=CGI_10011177; scaffold1382 WUBlastX DNA_Harbinger 219353 219634 220 + . . scaffold1382 GLEAN mRNA 219830 219946 0.999189 + . ID=CGI_10011178; scaffold1382 WUBlastX DNA_Harbinger 219830 219946 37 + . . scaffold1382 GLEAN mRNA 218944 219264 0.999189 + . ID=CGI_10011178; scaffold1382 WUBlastX DNA_Harbinger 218920 219264 170 + . . scaffold1382 GLEAN mRNA 219353 219634 0.999189 + . ID=CGI_10011178; scaffold1382 WUBlastX DNA_Harbinger 219353 219634 220 + . . scaffold1382 GLEAN mRNA 232612 232866 0.88642 - . ID=CGI_10011181; scaffold1382 WUBlastX LTR_DIRS 232612 232866 88 - . . scaffold1382 GLEAN mRNA 232615 232818 0.88642 - . ID=CGI_10011181; scaffold1382 WUBlastX LTR_DIRS 232615 232818 120 - . . scaffold1382 GLEAN mRNA 233324 233710 0.88642 - . ID=CGI_10011181; scaffold1382 WUBlastX DNA_Kolobok 233324 233710 35 - . . scaffold338 GLEAN mRNA 51290 51320 0.70241 + . ID=CGI_10011184; scaffold338 TRF Tandem_Repeat 51290 51320 53 + . . scaffold338 GLEAN mRNA 54387 54461 0.70241 + . ID=CGI_10011184; scaffold338 TRF Tandem_Repeat 54387 54461 53 + . . scaffold338 GLEAN mRNA 54415 54469 0.70241 + . ID=CGI_10011184; scaffold338 TRF Tandem_Repeat 54415 54469 110 + . . scaffold338 GLEAN mRNA 50657 51028 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_CR1-L2 50657 51028 83 - . . scaffold338 GLEAN mRNA 51525 51881 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_L2 51525 51881 88 - . . scaffold338 GLEAN mRNA 51845 52501 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_L2 51845 52501 375 - . . scaffold338 GLEAN mRNA 52519 52773 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_L2 52519 52773 84 - . . scaffold338 GLEAN mRNA 52489 52533 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_CR1 52489 52533 24 - . . scaffold338 GLEAN mRNA 51028 51108 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_CR1-L2 51028 51108 62 - . . scaffold338 GLEAN mRNA 50585 51085 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_L2 50585 51085 65 - . . scaffold338 GLEAN mRNA 51111 51200 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_L2 51111 51200 21 - . . scaffold338 GLEAN mRNA 206155 206633 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 206155 206633 379 + . . scaffold338 GLEAN mRNA 206239 206630 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 206239 206630 385 + . . scaffold338 GLEAN mRNA 207504 207807 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 207504 207807 216 + . . scaffold338 GLEAN mRNA 207456 207804 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 207456 207804 148 + . . scaffold338 GLEAN mRNA 207464 207807 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 207464 207807 545 + . . scaffold338 GLEAN mRNA 208407 208447 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 208407 208447 82 + . . scaffold338 GLEAN mRNA 208708 208790 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 208708 208790 139 + . . scaffold338 GLEAN mRNA 208858 208908 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 208858 208908 102 + . . scaffold338 GLEAN mRNA 211838 211867 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 211838 211867 53 + . . scaffold338 GLEAN mRNA 213173 213225 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 213173 213225 106 + . . scaffold338 GLEAN mRNA 213226 213307 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 213226 213307 51 + . . scaffold338 GLEAN mRNA 213239 213314 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 213239 213314 68 + . . scaffold338 GLEAN mRNA 213227 213345 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 213227 213345 62 + . . scaffold338 GLEAN mRNA 213238 213344 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 213238 213344 71 + . . scaffold338 GLEAN mRNA 215329 215514 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 215329 215514 126 + . . scaffold338 GLEAN mRNA 226868 228618 1 + . ID=CGI_10011188; scaffold338 TRF Tandem_Repeat 226868 228618 2336 + . . scaffold338 GLEAN mRNA 226235 226450 1 + . ID=CGI_10011188; scaffold338 WUBlastX LINE_RTE-X 226235 226450 52 - . . scaffold338 GLEAN mRNA 226334 226462 1 + . ID=CGI_10011188; scaffold338 WUBlastX LINE_RTE-X 226334 226462 65 - . . scaffold338 GLEAN mRNA 226313 226465 1 + . ID=CGI_10011188; scaffold338 WUBlastX LINE_RTE-X 226313 226465 56 - . . scaffold338 GLEAN mRNA 237721 237787 1 + . ID=CGI_10011188; scaffold338 TRF Tandem_Repeat 237721 237787 89 + . . scaffold338 GLEAN mRNA 243001 243042 1 + . ID=CGI_10011188; scaffold338 TRF Tandem_Repeat 243001 243042 75 + . . scaffold338 GLEAN mRNA 246005 246038 1 + . ID=CGI_10011188; scaffold338 TRF Tandem_Repeat 246005 246038 68 + . . scaffold338 GLEAN mRNA 247749 247984 1 + . ID=CGI_10011188; scaffold338 TRF Tandem_Repeat 247749 247984 210 + . . scaffold338 GLEAN mRNA 258933 258933 0.999999 + . ID=CGI_10011189; scaffold338 WUBlastX DNA_Academ 258933 259820 434 + . . scaffold338 GLEAN mRNA 258409 258930 0.999999 + . ID=CGI_10011189; scaffold338 WUBlastX DNA_Academ 258409 258930 121 + . . scaffold338 GLEAN mRNA 259329 259820 0.557893 + . ID=CGI_10011190; scaffold338 WUBlastX DNA_Academ 258933 259820 434 + . . scaffold508 GLEAN mRNA 15869 16192 0.968836 - . ID=CGI_10011191; scaffold508 WUBlastX LTR_Gypsy 15869 16192 173 - . . scaffold508 GLEAN mRNA 15857 16240 0.968836 - . ID=CGI_10011191; scaffold508 WUBlastX LTR_Gypsy 15857 16240 99 - . . scaffold508 GLEAN mRNA 15350 15850 0.968836 - . ID=CGI_10011191; scaffold508 WUBlastX LTR_Gypsy 15350 15850 251 - . . scaffold508 GLEAN mRNA 12280 13788 0.968836 - . ID=CGI_10011191; scaffold508 WUBlastX LTR_Gypsy 12280 13788 987 - . . scaffold508 GLEAN mRNA 15134 15850 0.968836 - . ID=CGI_10011191; scaffold508 WUBlastX LTR_Gypsy 15134 15850 221 - . . scaffold508 GLEAN mRNA 16243 16338 0.968836 - . ID=CGI_10011191; scaffold508 WUBlastX LTR_Copia 16243 16338 20 - . . scaffold508 GLEAN mRNA 16294 17358 0.968836 - . ID=CGI_10011191; scaffold508 WUBlastX LTR_Gypsy 16294 17358 80 - . . scaffold508 GLEAN mRNA 16291 17124 0.968836 - . ID=CGI_10011191; scaffold508 WUBlastX LTR_Gypsy 16291 17124 195 - . . scaffold508 GLEAN mRNA 151509 151895 0.536138 - . ID=CGI_10011200; scaffold508 WUBlastX DNA_MuDR 151509 151895 42 - . . scaffold508 GLEAN mRNA 167392 167778 0.936033 - . ID=CGI_10011201; scaffold508 WUBlastX DNA_MuDR 167392 167778 42 - . . scaffold508 GLEAN mRNA 222286 222317 0.999895 + . ID=CGI_10011205; scaffold508 TRF Tandem_Repeat 222286 222317 64 + . . scaffold508 GLEAN mRNA 241298 241835 0.999895 + . ID=CGI_10011205; scaffold508 TRF Tandem_Repeat 241298 241835 959 + . . scaffold508 GLEAN mRNA 249559 249604 0.999895 + . ID=CGI_10011205; scaffold508 TRF Tandem_Repeat 249559 249604 67 + . . scaffold508 GLEAN mRNA 267129 267172 0.93507 + . ID=CGI_10011206; scaffold508 TRF Tandem_Repeat 267129 267172 88 + . . scaffold508 GLEAN mRNA 269689 269795 0.93507 + . ID=CGI_10011206; scaffold508 TRF Tandem_Repeat 269689 269795 63 + . . scaffold508 GLEAN mRNA 269847 269925 0.93507 + . ID=CGI_10011206; scaffold508 TRF Tandem_Repeat 269847 269925 56 + . . scaffold508 GLEAN mRNA 269848 270531 0.93507 + . ID=CGI_10011206; scaffold508 TRF Tandem_Repeat 269848 270531 289 + . . scaffold508 GLEAN mRNA 269847 270499 0.93507 + . ID=CGI_10011206; scaffold508 TRF Tandem_Repeat 269847 270499 162 + . . scaffold508 GLEAN mRNA 269953 270353 0.93507 + . ID=CGI_10011206; scaffold508 TRF Tandem_Repeat 269953 270353 70 + . . scaffold508 GLEAN mRNA 269847 270493 0.93507 + . ID=CGI_10011206; scaffold508 TRF Tandem_Repeat 269847 270493 156 + . . scaffold508 GLEAN mRNA 273149 273192 0.93507 + . ID=CGI_10011206; scaffold508 TRF Tandem_Repeat 273149 273192 88 + . . scaffold508 GLEAN mRNA 274060 274107 0.93507 + . ID=CGI_10011206; scaffold508 TRF Tandem_Repeat 274060 274107 87 + . . scaffold508 GLEAN mRNA 275595 275625 0.93507 + . ID=CGI_10011206; scaffold508 TRF Tandem_Repeat 275595 275625 53 + . . scaffold508 GLEAN mRNA 279322 279376 0.93507 + . ID=CGI_10011206; scaffold508 TRF Tandem_Repeat 279322 279376 92 + . . scaffold508 GLEAN mRNA 279605 280207 0.93507 + . ID=CGI_10011206; scaffold508 TRF Tandem_Repeat 279605 280207 523 + . . scaffold1157 GLEAN mRNA 76794 77216 1 - . ID=CGI_10011210; scaffold1157 TRF Tandem_Repeat 76794 77216 605 + . . scaffold1157 GLEAN mRNA 78981 79022 1 - . ID=CGI_10011210; scaffold1157 TRF Tandem_Repeat 78981 79022 84 + . . scaffold1157 GLEAN mRNA 93318 93349 0.999434 + . ID=CGI_10011212; scaffold1157 TRF Tandem_Repeat 93318 93349 64 + . . scaffold1157 GLEAN mRNA 93882 93921 0.999434 + . ID=CGI_10011212; scaffold1157 TRF Tandem_Repeat 93882 93921 71 + . . scaffold1157 GLEAN mRNA 99563 99611 0.999434 + . ID=CGI_10011212; scaffold1157 TRF Tandem_Repeat 99563 99611 59 + . . scaffold1157 GLEAN mRNA 112420 112529 0.999434 + . ID=CGI_10011212; scaffold1157 TRF Tandem_Repeat 112420 112529 170 + . . scaffold1157 GLEAN mRNA 120082 120200 0.999434 + . ID=CGI_10011212; scaffold1157 TRF Tandem_Repeat 120082 120200 125 + . . scaffold1157 GLEAN mRNA 198235 198272 0.853698 + . ID=CGI_10011218; scaffold1157 TRF Tandem_Repeat 198235 198272 76 + . . scaffold1157 GLEAN mRNA 198302 198345 0.853698 + . ID=CGI_10011218; scaffold1157 TRF Tandem_Repeat 198302 198345 88 + . . scaffold1157 GLEAN mRNA 206927 207049 0.618241 + . ID=CGI_10011219; scaffold1157 WUBlastX LINE_L1-Tx1 206924 207049 20 - . . scaffold1157 GLEAN mRNA 213762 213811 0.462871 - . ID=CGI_10011221; scaffold1157 TRF Tandem_Repeat 213762 213811 100 + . . scaffold1157 GLEAN mRNA 224869 224901 0.462871 - . ID=CGI_10011221; scaffold1157 TRF Tandem_Repeat 224869 224901 66 + . . scaffold1157 GLEAN mRNA 228112 228279 0.462871 - . ID=CGI_10011221; scaffold1157 WUBlastX LINE_CR1-L2 228112 228279 44 - . . scaffold1157 GLEAN mRNA 216512 217384 0.462871 - . ID=CGI_10011221; scaffold1157 WUBlastX LINE_L2 216512 217384 403 - . . scaffold1157 GLEAN mRNA 229176 229319 0.462871 - . ID=CGI_10011221; scaffold1157 WUBlastX LINE_L2 229176 229319 29 - . . scaffold1157 GLEAN mRNA 228982 229176 0.462871 - . ID=CGI_10011221; scaffold1157 WUBlastX LINE_CR1 228982 229176 80 - . . scaffold1157 GLEAN mRNA 229084 229206 0.462871 - . ID=CGI_10011221; scaffold1157 WUBlastX LINE_L2 229084 229206 46 - . . scaffold1157 GLEAN mRNA 228771 228902 0.462871 - . ID=CGI_10011221; scaffold1157 WUBlastX LINE_L2 228771 228902 39 - . . scaffold1157 GLEAN mRNA 228919 229182 0.462871 - . ID=CGI_10011221; scaffold1157 WUBlastX LINE_L2 228919 229182 34 - . . scaffold1157 GLEAN mRNA 232369 232429 0.462871 - . ID=CGI_10011221; scaffold1157 TRF Tandem_Repeat 232369 232429 122 + . . scaffold1157 GLEAN mRNA 247002 247059 0.922381 - . ID=CGI_10011222; scaffold1157 TRF Tandem_Repeat 247002 247059 80 + . . scaffold1157 GLEAN mRNA 252376 252430 0.922381 - . ID=CGI_10011222; scaffold1157 TRF Tandem_Repeat 252376 252430 51 + . . scaffold1157 GLEAN mRNA 252447 252484 0.922381 - . ID=CGI_10011222; scaffold1157 TRF Tandem_Repeat 252447 252484 51 + . . scaffold1157 GLEAN mRNA 252447 252489 0.922381 - . ID=CGI_10011222; scaffold1157 TRF Tandem_Repeat 252447 252489 50 + . . scaffold1773 GLEAN mRNA 83981 84685 0.980126 - . ID=CGI_10011225; scaffold1773 WUBlastX LTR_Gypsy-Cigr 83981 84685 184 - . . scaffold1773 GLEAN mRNA 83933 84175 0.980126 - . ID=CGI_10011225; scaffold1773 WUBlastX LTR_Copia 83933 84175 67 - . . scaffold1773 GLEAN mRNA 83864 84037 0.980126 - . ID=CGI_10011225; scaffold1773 WUBlastX LTR_Gypsy 83864 84037 36 - . . scaffold1773 GLEAN mRNA 115331 115633 0.995285 + . ID=CGI_10011228; scaffold1773 WUBlastX LINE_Penelope 115331 115633 39 + . . scaffold1773 GLEAN mRNA 115460 115624 0.995285 + . ID=CGI_10011228; scaffold1773 WUBlastX LINE_Penelope 115460 115624 69 + . . scaffold1773 GLEAN mRNA 115638 116210 0.995285 + . ID=CGI_10011228; scaffold1773 WUBlastX LINE_Penelope 115638 116210 133 + . . scaffold850 GLEAN mRNA 9300 10018 0.999668 - . ID=CGI_10011232; scaffold850 TRF Tandem_Repeat 9300 10018 490 + . . scaffold850 GLEAN mRNA 9415 9545 0.999668 - . ID=CGI_10011232; scaffold850 TRF Tandem_Repeat 9415 9545 109 + . . scaffold850 GLEAN mRNA 9427 10014 0.999668 - . ID=CGI_10011232; scaffold850 TRF Tandem_Repeat 9427 10014 366 + . . scaffold850 GLEAN mRNA 9528 10013 0.999668 - . ID=CGI_10011232; scaffold850 TRF Tandem_Repeat 9528 10013 336 + . . scaffold850 GLEAN mRNA 49081 49148 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 49081 49148 127 + . . scaffold850 GLEAN mRNA 50989 51320 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 50989 51320 284 + . . scaffold850 GLEAN mRNA 52587 53085 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 52587 53085 349 + . . scaffold850 GLEAN mRNA 52561 53094 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 52561 53094 650 + . . scaffold850 GLEAN mRNA 52634 53094 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 52634 53094 590 + . . scaffold850 GLEAN mRNA 53207 53639 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 53207 53639 435 + . . scaffold850 GLEAN mRNA 54493 54532 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 54493 54532 80 + . . scaffold850 GLEAN mRNA 64960 65007 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 64960 65007 87 + . . scaffold850 GLEAN mRNA 67599 67655 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 67599 67655 114 + . . scaffold850 GLEAN mRNA 70615 70650 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 70615 70650 65 + . . scaffold850 GLEAN mRNA 70866 71199 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 70866 71199 342 + . . scaffold850 GLEAN mRNA 70883 71248 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 70883 71248 313 + . . scaffold850 GLEAN mRNA 70896 71246 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 70896 71246 384 + . . scaffold850 GLEAN mRNA 71122 71216 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 71122 71216 76 + . . scaffold850 GLEAN mRNA 70956 71248 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 70956 71248 160 + . . scaffold850 GLEAN mRNA 84097 84164 0.309755 + . ID=CGI_10011236; scaffold850 TRF Tandem_Repeat 84097 84164 127 + . . scaffold850 GLEAN mRNA 85723 86075 0.309755 + . ID=CGI_10011236; scaffold850 TRF Tandem_Repeat 85723 86075 472 + . . scaffold850 GLEAN mRNA 85723 86075 0.309755 + . ID=CGI_10011236; scaffold850 TRF Tandem_Repeat 85723 86075 490 + . . scaffold850 GLEAN mRNA 90067 90441 0.309755 + . ID=CGI_10011236; scaffold850 TRF Tandem_Repeat 90067 90441 464 + . . scaffold850 GLEAN mRNA 90516 90966 0.309755 + . ID=CGI_10011236; scaffold850 TRF Tandem_Repeat 90516 90966 875 + . . scaffold850 GLEAN mRNA 91104 91170 0.309755 + . ID=CGI_10011236; scaffold850 TRF Tandem_Repeat 91104 91170 71 + . . scaffold850 GLEAN mRNA 95579 95636 0.309755 + . ID=CGI_10011236; scaffold850 TRF Tandem_Repeat 95579 95636 53 + . . scaffold850 GLEAN mRNA 95592 95660 0.309755 + . ID=CGI_10011236; scaffold850 TRF Tandem_Repeat 95592 95660 84 + . . scaffold850 GLEAN mRNA 98540 98829 0.309755 + . ID=CGI_10011236; scaffold850 TRF Tandem_Repeat 98540 98829 285 + . . scaffold850 GLEAN mRNA 98867 99580 0.309755 + . ID=CGI_10011236; scaffold850 TRF Tandem_Repeat 98867 99580 531 + . . scaffold850 GLEAN mRNA 109991 110045 0.309755 + . ID=CGI_10011236; scaffold850 TRF Tandem_Repeat 109991 110045 110 + . . scaffold850 GLEAN mRNA 110997 111227 0.309755 + . ID=CGI_10011236; scaffold850 TRF Tandem_Repeat 110997 111227 320 + . . scaffold850 GLEAN mRNA 115241 115295 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 115241 115295 85 + . . scaffold850 GLEAN mRNA 115242 115298 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 115242 115298 62 + . . scaffold850 GLEAN mRNA 115248 115298 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 115248 115298 75 + . . scaffold850 GLEAN mRNA 116322 117414 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 116322 117414 1570 + . . scaffold850 GLEAN mRNA 118008 118083 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 118008 118083 98 + . . scaffold850 GLEAN mRNA 118008 118083 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 118008 118083 80 + . . scaffold850 GLEAN mRNA 119712 120134 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 119712 120134 609 + . . scaffold850 GLEAN mRNA 124127 124624 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 124127 124624 761 + . . scaffold850 GLEAN mRNA 126393 126704 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 126393 126704 293 + . . scaffold850 GLEAN mRNA 127103 127292 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 127103 127292 96 + . . scaffold850 GLEAN mRNA 127115 127252 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 127115 127252 112 + . . scaffold850 GLEAN mRNA 127262 127294 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 127262 127294 66 + . . scaffold850 GLEAN mRNA 128928 130457 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 128928 130457 2386 + . . scaffold850 GLEAN mRNA 131903 132025 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 131903 132025 93 + . . scaffold850 GLEAN mRNA 139812 139847 0.294252 - . ID=CGI_10011239; scaffold850 TRF Tandem_Repeat 139812 139847 72 + . . scaffold850 GLEAN mRNA 142948 143086 0.294252 - . ID=CGI_10011239; scaffold850 TRF Tandem_Repeat 142948 143086 111 + . . scaffold850 GLEAN mRNA 142935 143108 0.294252 - . ID=CGI_10011239; scaffold850 TRF Tandem_Repeat 142935 143108 156 + . . scaffold850 GLEAN mRNA 148763 148810 0.294252 - . ID=CGI_10011239; scaffold850 TRF Tandem_Repeat 148763 148810 78 + . . scaffold850 GLEAN mRNA 152226 152525 0.294252 - . ID=CGI_10011239; scaffold850 TRF Tandem_Repeat 152226 152525 501 + . . scaffold850 GLEAN mRNA 154331 154357 0.294252 - . ID=CGI_10011239; scaffold850 TRF Tandem_Repeat 154331 154357 54 + . . scaffold850 GLEAN mRNA 155037 155080 0.294252 - . ID=CGI_10011239; scaffold850 TRF Tandem_Repeat 155037 155080 88 + . . scaffold850 GLEAN mRNA 155439 155485 0.294252 - . ID=CGI_10011239; scaffold850 TRF Tandem_Repeat 155439 155485 94 + . . scaffold850 GLEAN mRNA 157153 157178 0.294252 - . ID=CGI_10011239; scaffold850 TRF Tandem_Repeat 157153 157178 52 + . . scaffold850 GLEAN mRNA 157484 157789 0.294252 - . ID=CGI_10011239; scaffold850 TRF Tandem_Repeat 157484 157789 336 + . . scaffold850 GLEAN mRNA 158392 158422 0.294252 - . ID=CGI_10011239; scaffold850 TRF Tandem_Repeat 158392 158422 62 + . . scaffold850 GLEAN mRNA 173203 173351 1 + . ID=CGI_10011242; scaffold850 TRF Tandem_Repeat 173203 173351 165 + . . scaffold850 GLEAN mRNA 173197 173351 1 + . ID=CGI_10011242; scaffold850 TRF Tandem_Repeat 173197 173351 229 + . . scaffold850 GLEAN mRNA 173203 173377 1 + . ID=CGI_10011242; scaffold850 TRF Tandem_Repeat 173203 173377 163 + . . scaffold850 GLEAN mRNA 196651 196929 0.558395 + . ID=CGI_10011243; scaffold850 TRF Tandem_Repeat 196651 196929 540 + . . scaffold850 GLEAN mRNA 208149 208363 0.999998 + . ID=CGI_10011244; scaffold850 TRF Tandem_Repeat 208149 208363 334 + . . scaffold850 GLEAN mRNA 208149 208385 0.999998 + . ID=CGI_10011244; scaffold850 TRF Tandem_Repeat 208149 208385 339 + . . scaffold850 GLEAN mRNA 208880 209130 0.999998 + . ID=CGI_10011244; scaffold850 TRF Tandem_Repeat 208880 209130 403 + . . scaffold850 GLEAN mRNA 209200 209318 0.999998 + . ID=CGI_10011244; scaffold850 TRF Tandem_Repeat 209200 209318 94 + . . scaffold850 GLEAN mRNA 209189 209300 0.999998 + . ID=CGI_10011244; scaffold850 TRF Tandem_Repeat 209189 209300 206 + . . scaffold850 GLEAN mRNA 209626 209655 0.999998 + . ID=CGI_10011244; scaffold850 TRF Tandem_Repeat 209626 209655 60 + . . scaffold850 GLEAN mRNA 215712 215747 0.999998 + . ID=CGI_10011244; scaffold850 TRF Tandem_Repeat 215712 215747 72 + . . scaffold850 GLEAN mRNA 257211 257265 0.455159 - . ID=CGI_10011247; scaffold850 TRF Tandem_Repeat 257211 257265 110 + . . scaffold850 GLEAN mRNA 278684 280409 0.455159 - . ID=CGI_10011247; scaffold850 TRF Tandem_Repeat 278684 280409 1918 + . . scaffold230 GLEAN mRNA 128724 128753 0.534748 - . ID=CGI_10011251; scaffold230 TRF Tandem_Repeat 128724 128753 51 + . . scaffold230 GLEAN mRNA 128753 128798 0.534748 - . ID=CGI_10011251; scaffold230 TRF Tandem_Repeat 128753 128798 92 + . . scaffold230 GLEAN mRNA 129691 129825 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 129691 129825 56 - . . scaffold230 GLEAN mRNA 129566 129691 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 129566 129691 44 - . . scaffold230 GLEAN mRNA 129697 129885 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 129697 129885 44 - . . scaffold230 GLEAN mRNA 129640 129780 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 129640 129780 55 - . . scaffold230 GLEAN mRNA 129539 129691 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 129539 129691 29 - . . scaffold230 GLEAN mRNA 129691 129777 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 129691 129777 68 - . . scaffold230 GLEAN mRNA 129903 130286 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 129903 130286 130 - . . scaffold230 GLEAN mRNA 132858 133444 0.534748 - . ID=CGI_10011251; scaffold230 TRF Tandem_Repeat 132858 133444 540 + . . scaffold230 GLEAN mRNA 132858 133444 0.534748 - . ID=CGI_10011251; scaffold230 TRF Tandem_Repeat 132858 133444 759 + . . scaffold230 GLEAN mRNA 136765 138132 0.534748 - . ID=CGI_10011251; scaffold230 TRF Tandem_Repeat 136765 138132 2105 + . . scaffold230 GLEAN mRNA 136765 138132 0.534748 - . ID=CGI_10011251; scaffold230 TRF Tandem_Repeat 136765 138132 2119 + . . scaffold230 GLEAN mRNA 143290 143349 0.534748 - . ID=CGI_10011251; scaffold230 TRF Tandem_Repeat 143290 143349 93 + . . scaffold230 GLEAN mRNA 130283 131179 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 130283 131179 267 - . . scaffold230 GLEAN mRNA 130771 131721 0.534748 - . ID=CGI_10011251; scaffold230 WUBlastX DNA_hAT-Tip100 130771 131721 321 - . . scaffold230 GLEAN mRNA 187215 187245 0.270873 - . ID=CGI_10011252; scaffold230 TRF Tandem_Repeat 187215 187245 62 + . . scaffold230 GLEAN mRNA 196310 196600 0.270873 - . ID=CGI_10011252; scaffold230 WUBlastX LTR_Ngaro 196310 196600 47 + . . scaffold230 GLEAN mRNA 203128 203152 0.270873 - . ID=CGI_10011252; scaffold230 TRF Tandem_Repeat 203128 203152 50 + . . scaffold230 GLEAN mRNA 204279 204361 0.270873 - . ID=CGI_10011252; scaffold230 TRF Tandem_Repeat 204279 204361 69 + . . scaffold230 GLEAN mRNA 204438 204513 0.270873 - . ID=CGI_10011252; scaffold230 TRF Tandem_Repeat 204438 204513 55 + . . scaffold230 GLEAN mRNA 205198 205287 0.270873 - . ID=CGI_10011252; scaffold230 TRF Tandem_Repeat 205198 205287 65 + . . scaffold230 GLEAN mRNA 209757 210194 0.270873 - . ID=CGI_10011252; scaffold230 WUBlastX LINE_Penelope 209757 210194 162 + . . scaffold230 GLEAN mRNA 210109 210501 0.270873 - . ID=CGI_10011252; scaffold230 WUBlastX LINE_Penelope 210109 210501 100 + . . scaffold230 GLEAN mRNA 208520 209572 0.270873 - . ID=CGI_10011252; scaffold230 WUBlastX LINE_Penelope 208520 209572 601 + . . scaffold230 GLEAN mRNA 218641 219048 0.270873 - . ID=CGI_10011252; scaffold230 WUBlastX LTR_DIRS 218641 219048 328 - . . scaffold230 GLEAN mRNA 218503 218973 0.270873 - . ID=CGI_10011252; scaffold230 WUBlastX LTR_Gypsy 218503 218973 57 - . . scaffold230 GLEAN mRNA 218575 218991 0.270873 - . ID=CGI_10011252; scaffold230 WUBlastX LTR_Gypsy 218575 218991 71 - . . scaffold230 GLEAN mRNA 215049 215945 0.270873 - . ID=CGI_10011252; scaffold230 WUBlastX LTR_DIRS 215049 215945 308 - . . scaffold230 GLEAN mRNA 215999 217171 0.270873 - . ID=CGI_10011252; scaffold230 WUBlastX LTR_DIRS 215999 217171 441 - . . scaffold230 GLEAN mRNA 218644 219177 0.270873 - . ID=CGI_10011252; scaffold230 WUBlastX LTR_DIRS 218644 219177 281 - . . scaffold230 GLEAN mRNA 218641 219426 0.270873 - . ID=CGI_10011252; scaffold230 WUBlastX LTR_Gypsy 218641 219426 106 - . . scaffold230 GLEAN mRNA 216185 217171 0.270873 - . ID=CGI_10011252; scaffold230 WUBlastX LTR_DIRS 216185 217171 474 - . . scaffold230 GLEAN mRNA 196599 196892 0.270873 - . ID=CGI_10011252; scaffold230 WUBlastX LTR_Ngaro 196599 196892 69 + . . scaffold230 GLEAN mRNA 252418 252777 0.439776 - . ID=CGI_10011254; scaffold230 WUBlastX LTR_ERV1 252418 252777 81 + . . scaffold230 GLEAN mRNA 251973 252386 0.439776 - . ID=CGI_10011254; scaffold230 WUBlastX LTR_Gypsy 251973 252386 252 + . . scaffold230 GLEAN mRNA 252391 252714 0.439776 - . ID=CGI_10011254; scaffold230 WUBlastX LTR_Gypsy 252391 252714 274 + . . scaffold230 GLEAN mRNA 252704 252826 0.439776 - . ID=CGI_10011254; scaffold230 WUBlastX LTR_Gypsy 252704 252826 66 + . . scaffold230 GLEAN mRNA 251877 252395 0.439776 - . ID=CGI_10011254; scaffold230 WUBlastX LTR_Gypsy 251877 252395 227 + . . scaffold230 GLEAN mRNA 251654 251869 0.439776 - . ID=CGI_10011254; scaffold230 WUBlastX LTR_Gypsy 251654 251869 64 + . . scaffold230 GLEAN mRNA 252704 252859 0.439776 - . ID=CGI_10011254; scaffold230 WUBlastX LTR_Gypsy 252704 252859 51 + . . scaffold230 GLEAN mRNA 268489 268557 0.439776 - . ID=CGI_10011254; scaffold230 TRF Tandem_Repeat 268489 268557 57 + . . scaffold579 GLEAN mRNA 4156 4224 0.999999 + . ID=CGI_10011255; scaffold579 TRF Tandem_Repeat 4156 4224 138 + . . scaffold579 GLEAN mRNA 6477 6614 0.999999 + . ID=CGI_10011255; scaffold579 TRF Tandem_Repeat 6477 6614 188 + . . scaffold579 GLEAN mRNA 12437 12466 0.999999 + . ID=CGI_10011255; scaffold579 TRF Tandem_Repeat 12437 12466 60 + . . scaffold579 GLEAN mRNA 14094 14145 0.999999 + . ID=CGI_10011255; scaffold579 TRF Tandem_Repeat 14094 14145 104 + . . scaffold579 GLEAN mRNA 32853 33087 0.830976 - . ID=CGI_10011256; scaffold579 TRF Tandem_Repeat 32853 33087 416 + . . scaffold579 GLEAN mRNA 33265 33434 0.830976 - . ID=CGI_10011256; scaffold579 TRF Tandem_Repeat 33265 33434 295 + . . scaffold579 GLEAN mRNA 46252 46289 0.830976 - . ID=CGI_10011256; scaffold579 TRF Tandem_Repeat 46252 46289 76 + . . scaffold579 GLEAN mRNA 46360 46403 0.830976 - . ID=CGI_10011256; scaffold579 TRF Tandem_Repeat 46360 46403 88 + . . scaffold579 GLEAN mRNA 47869 48309 0.830976 - . ID=CGI_10011256; scaffold579 TRF Tandem_Repeat 47869 48309 864 + . . scaffold579 GLEAN mRNA 48283 48488 0.830976 - . ID=CGI_10011256; scaffold579 TRF Tandem_Repeat 48283 48488 367 + . . scaffold579 GLEAN mRNA 50460 50529 0.830976 - . ID=CGI_10011256; scaffold579 TRF Tandem_Repeat 50460 50529 122 + . . scaffold579 GLEAN mRNA 54108 54382 0.98713 - . ID=CGI_10011257; scaffold579 TRF Tandem_Repeat 54108 54382 191 + . . scaffold579 GLEAN mRNA 54110 54366 0.98713 - . ID=CGI_10011257; scaffold579 TRF Tandem_Repeat 54110 54366 171 + . . scaffold579 GLEAN mRNA 54108 54360 0.98713 - . ID=CGI_10011257; scaffold579 TRF Tandem_Repeat 54108 54360 240 + . . scaffold579 GLEAN mRNA 57197 57310 0.98713 - . ID=CGI_10011257; scaffold579 TRF Tandem_Repeat 57197 57310 72 + . . scaffold579 GLEAN mRNA 57419 57466 0.98713 - . ID=CGI_10011257; scaffold579 TRF Tandem_Repeat 57419 57466 52 + . . scaffold579 GLEAN mRNA 59893 59964 0.98713 - . ID=CGI_10011257; scaffold579 TRF Tandem_Repeat 59893 59964 67 + . . scaffold579 GLEAN mRNA 76520 77752 0.999224 - . ID=CGI_10011260; scaffold579 WUBlastX DNA_MuDR 76520 77752 125 - . . scaffold579 GLEAN mRNA 100675 100830 0.999673 - . ID=CGI_10011261; scaffold579 TRF Tandem_Repeat 100675 100830 127 + . . scaffold579 GLEAN mRNA 189547 189738 0.55669 - . ID=CGI_10011262; scaffold579 TRF Tandem_Repeat 189547 189738 275 + . . scaffold579 GLEAN mRNA 194136 194186 0.863149 + . ID=CGI_10011264; scaffold579 TRF Tandem_Repeat 194136 194186 95 + . . scaffold579 GLEAN mRNA 206964 207149 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX DNA_TcMar-Tc1 206964 207149 36 + . . scaffold579 GLEAN mRNA 205917 206075 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX DNA_TcMar-Tc1 205917 206075 31 + . . scaffold579 GLEAN mRNA 207241 207567 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX DNA_TcMar-Tc1 207241 207567 52 + . . scaffold579 GLEAN mRNA 207241 207477 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX DNA_TcMar-Tc1 207241 207477 87 + . . scaffold579 GLEAN mRNA 206870 206935 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX DNA_TcMar-Tc1 206870 206935 33 + . . scaffold579 GLEAN mRNA 207172 207456 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX DNA_TcMar-Tc1 207172 207456 67 + . . scaffold579 GLEAN mRNA 217827 217883 0.863149 + . ID=CGI_10011264; scaffold579 TRF Tandem_Repeat 217827 217883 57 + . . scaffold579 GLEAN mRNA 214197 215270 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX LTR_Pao 214197 215270 164 + . . scaffold579 GLEAN mRNA 215621 215674 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX LTR_Pao 215621 215674 43 + . . scaffold579 GLEAN mRNA 215252 215758 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX LTR_Pao 215252 215758 28 + . . scaffold579 GLEAN mRNA 216789 217115 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX LINE_Penelope 216789 217115 29 - . . scaffold579 GLEAN mRNA 216759 217058 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX LINE_Penelope 216759 217058 155 - . . scaffold579 GLEAN mRNA 213878 214195 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX LTR_Pao 213878 214195 44 + . . scaffold579 GLEAN mRNA 214779 215618 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX LTR_Pao 214779 215618 346 + . . scaffold579 GLEAN mRNA 213821 214180 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX LTR_Pao 213821 214180 38 + . . scaffold579 GLEAN mRNA 213929 214195 0.863149 + . ID=CGI_10011264; scaffold579 WUBlastX LTR_Pao 213929 214195 109 + . . scaffold579 GLEAN mRNA 261068 261097 0.843137 - . ID=CGI_10011267; scaffold579 TRF Tandem_Repeat 261068 261097 60 + . . scaffold579 GLEAN mRNA 264650 264675 0.988891 + . ID=CGI_10011268; scaffold579 TRF Tandem_Repeat 264650 264675 52 + . . scaffold579 GLEAN mRNA 269711 269740 0.988891 + . ID=CGI_10011268; scaffold579 TRF Tandem_Repeat 269711 269740 60 + . . scaffold579 GLEAN mRNA 275341 275391 0.988891 + . ID=CGI_10011268; scaffold579 TRF Tandem_Repeat 275341 275391 93 + . . scaffold579 GLEAN mRNA 277878 277944 0.988891 + . ID=CGI_10011268; scaffold579 TRF Tandem_Repeat 277878 277944 55 + . . scaffold579 GLEAN mRNA 267248 267583 0.988891 + . ID=CGI_10011268; scaffold579 WUBlastX LINE_RTE-BovB 267248 267583 26 + . . scaffold579 GLEAN mRNA 267251 267442 0.988891 + . ID=CGI_10011268; scaffold579 WUBlastX LINE_RTE-BovB 267251 267442 93 + . . scaffold579 GLEAN mRNA 268333 268611 0.988891 + . ID=CGI_10011268; scaffold579 WUBlastX LINE_RTE-BovB 268333 268611 202 + . . scaffold579 GLEAN mRNA 268604 269386 0.988891 + . ID=CGI_10011268; scaffold579 WUBlastX LINE_RTE-BovB 268604 269386 186 + . . scaffold579 GLEAN mRNA 268182 268334 0.988891 + . ID=CGI_10011268; scaffold579 WUBlastX LINE_RTE-BovB 268182 268334 131 + . . scaffold579 GLEAN mRNA 268089 268334 0.988891 + . ID=CGI_10011268; scaffold579 WUBlastX LINE_RTE-BovB 268089 268334 74 + . . scaffold579 GLEAN mRNA 267245 267526 0.988891 + . ID=CGI_10011268; scaffold579 WUBlastX LINE_RTE-BovB 267245 267526 83 + . . scaffold579 GLEAN mRNA 267213 267287 0.988891 + . ID=CGI_10011268; scaffold579 WUBlastX LINE_RTE-BovB 267213 267287 28 + . . scaffold579 GLEAN mRNA 267281 267442 0.988891 + . ID=CGI_10011268; scaffold579 WUBlastX LINE_RTE-BovB 267281 267442 95 + . . scaffold579 GLEAN mRNA 278573 278618 0.988891 + . ID=CGI_10011268; scaffold579 TRF Tandem_Repeat 278573 278618 74 + . . scaffold579 GLEAN mRNA 280185 280215 0.988891 + . ID=CGI_10011268; scaffold579 TRF Tandem_Repeat 280185 280215 53 + . . scaffold59 GLEAN mRNA 1721 1774 0.999991 + . ID=CGI_10011269; scaffold59 TRF Tandem_Repeat 1721 1774 108 + . . scaffold59 GLEAN mRNA 3519 3573 0.999991 + . ID=CGI_10011269; scaffold59 TRF Tandem_Repeat 3519 3573 110 + . . scaffold59 GLEAN mRNA 8568 8593 0.999991 + . ID=CGI_10011269; scaffold59 TRF Tandem_Repeat 8568 8593 52 + . . scaffold59 GLEAN mRNA 71383 71637 0.61656 - . ID=CGI_10011272; scaffold59 WUBlastX LTR_Ngaro 71383 71637 37 - . . scaffold59 GLEAN mRNA 73223 73879 0.61656 - . ID=CGI_10011272; scaffold59 WUBlastX LTR_Ngaro 73223 73879 160 - . . scaffold59 GLEAN mRNA 73403 74212 0.61656 - . ID=CGI_10011272; scaffold59 WUBlastX LTR_Ngaro 73403 74212 160 - . . scaffold59 GLEAN mRNA 71689 73131 0.61656 - . ID=CGI_10011272; scaffold59 WUBlastX LTR_Ngaro 71689 73131 948 - . . scaffold59 GLEAN mRNA 71526 71690 0.61656 - . ID=CGI_10011272; scaffold59 WUBlastX LTR_Ngaro 71526 71690 106 - . . scaffold59 GLEAN mRNA 70640 71383 0.61656 - . ID=CGI_10011272; scaffold59 WUBlastX LTR_Ngaro 70640 71383 329 - . . scaffold59 GLEAN mRNA 219515 220208 0.932002 - . ID=CGI_10011277; scaffold59 TRF Tandem_Repeat 219515 220208 1055 + . . scaffold59 GLEAN mRNA 221566 221649 0.932002 - . ID=CGI_10011277; scaffold59 TRF Tandem_Repeat 221566 221649 62 + . . scaffold59 GLEAN mRNA 221970 222326 0.932002 - . ID=CGI_10011277; scaffold59 TRF Tandem_Repeat 221970 222326 483 + . . scaffold59 GLEAN mRNA 221970 222326 0.932002 - . ID=CGI_10011277; scaffold59 TRF Tandem_Repeat 221970 222326 454 + . . scaffold59 GLEAN mRNA 225072 225105 0.932002 - . ID=CGI_10011277; scaffold59 TRF Tandem_Repeat 225072 225105 59 + . . scaffold59 GLEAN mRNA 226926 227204 0.932002 - . ID=CGI_10011277; scaffold59 WUBlastX LTR_Gypsy 226926 227204 42 - . . scaffold59 GLEAN mRNA 232799 232848 0.988711 - . ID=CGI_10011278; scaffold59 TRF Tandem_Repeat 232799 232848 100 + . . scaffold59 GLEAN mRNA 238536 239303 0.988711 - . ID=CGI_10011278; scaffold59 WUBlastX RC_Helitron 238536 239303 263 + . . scaffold59 GLEAN mRNA 239340 239564 0.988711 - . ID=CGI_10011278; scaffold59 WUBlastX RC_Helitron 239340 239564 104 + . . scaffold59 GLEAN mRNA 239331 239636 0.988711 - . ID=CGI_10011278; scaffold59 WUBlastX RC_Helitron 239331 239636 74 + . . scaffold1821 GLEAN mRNA 73653 73695 0.995527 - . ID=CGI_10011282; scaffold1821 TRF Tandem_Repeat 73653 73695 86 + . . scaffold1821 GLEAN mRNA 80660 80707 0.995527 - . ID=CGI_10011282; scaffold1821 TRF Tandem_Repeat 80660 80707 69 + . . scaffold1821 GLEAN mRNA 98927 98966 1 + . ID=CGI_10011284; scaffold1821 TRF Tandem_Repeat 98927 98966 80 + . . scaffold1821 GLEAN mRNA 171908 172567 0.681651 - . ID=CGI_10011291; scaffold1821 WUBlastX LINE_RTE-BovB 171908 172567 441 + . . scaffold1821 GLEAN mRNA 171478 171843 0.681651 - . ID=CGI_10011291; scaffold1821 WUBlastX LINE_L1 171478 171843 44 + . . scaffold1821 GLEAN mRNA 171553 171906 0.681651 - . ID=CGI_10011291; scaffold1821 WUBlastX LINE_RTE-X 171553 171906 107 + . . scaffold1821 GLEAN mRNA 171559 171858 0.681651 - . ID=CGI_10011291; scaffold1821 WUBlastX LINE_RTE-BovB 171559 171858 290 + . . scaffold1821 GLEAN mRNA 181317 181363 0.990901 - . ID=CGI_10011292; scaffold1821 TRF Tandem_Repeat 181317 181363 94 + . . scaffold1821 GLEAN mRNA 183886 184043 0.990901 - . ID=CGI_10011292; scaffold1821 WUBlastX LINE_L2 183886 184263 127 + . . scaffold1821 GLEAN mRNA 191892 191950 0.999676 + . ID=CGI_10011293; scaffold1821 TRF Tandem_Repeat 191892 191950 118 + . . scaffold1821 GLEAN mRNA 205954 206005 1 + . ID=CGI_10011294; scaffold1821 TRF Tandem_Repeat 205954 206005 104 + . . scaffold1821 GLEAN mRNA 211813 211870 0.510977 + . ID=CGI_10011295; scaffold1821 TRF Tandem_Repeat 211813 211870 107 + . . scaffold1821 GLEAN mRNA 212314 213058 0.510977 + . ID=CGI_10011295; scaffold1821 TRF Tandem_Repeat 212314 213058 1088 + . . scaffold1821 GLEAN mRNA 218102 218161 0.999351 + . ID=CGI_10011296; scaffold1821 TRF Tandem_Repeat 218102 218161 120 + . . scaffold1821 GLEAN mRNA 236492 236559 0.999987 + . ID=CGI_10011297; scaffold1821 TRF Tandem_Repeat 236492 236559 120 + . . scaffold1821 GLEAN mRNA 244371 244433 0.999945 + . ID=CGI_10011298; scaffold1821 TRF Tandem_Repeat 244371 244433 117 + . . scaffold1821 GLEAN mRNA 256363 256423 0.998201 + . ID=CGI_10011299; scaffold1821 TRF Tandem_Repeat 256363 256423 122 + . . scaffold1821 GLEAN mRNA 274993 275032 1 + . ID=CGI_10011301; scaffold1821 TRF Tandem_Repeat 274993 275032 80 + . . scaffold1892 GLEAN mRNA 32923 33015 1 - . ID=CGI_10011305; scaffold1892 WUBlastX DNA_hAT-Ac 32923 33015 98 + . . scaffold1892 GLEAN mRNA 73028 73101 0.999989 - . ID=CGI_10011309; scaffold1892 TRF Tandem_Repeat 73028 73101 78 + . . scaffold1892 GLEAN mRNA 73029 73103 0.999989 - . ID=CGI_10011309; scaffold1892 TRF Tandem_Repeat 73029 73103 66 + . . scaffold1892 GLEAN mRNA 73028 73112 0.999989 - . ID=CGI_10011309; scaffold1892 TRF Tandem_Repeat 73028 73112 59 + . . scaffold1892 GLEAN mRNA 81431 81478 0.999989 - . ID=CGI_10011309; scaffold1892 TRF Tandem_Repeat 81431 81478 96 + . . scaffold1892 GLEAN mRNA 131498 132310 0.99506 - . ID=CGI_10011314; scaffold1892 WUBlastX DNA_hAT-hAT5 131498 132310 104 - . . scaffold1892 GLEAN mRNA 191193 191416 0.699062 + . ID=CGI_10011318; scaffold1892 TRF Tandem_Repeat 191193 191416 203 + . . scaffold1892 GLEAN mRNA 193820 193852 0.699062 + . ID=CGI_10011318; scaffold1892 TRF Tandem_Repeat 193820 193852 57 + . . scaffold1892 GLEAN mRNA 193820 193852 0.92045 - . ID=CGI_10011319; scaffold1892 TRF Tandem_Repeat 193820 193852 57 + . . scaffold1892 GLEAN mRNA 229882 229999 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 229882 229999 202 + . . scaffold1892 GLEAN mRNA 232739 232837 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 232739 232837 83 + . . scaffold1892 GLEAN mRNA 233223 233844 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 233223 233844 844 + . . scaffold1892 GLEAN mRNA 237786 237994 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 237786 237994 238 + . . scaffold1892 GLEAN mRNA 242208 242247 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 242208 242247 80 + . . scaffold1892 GLEAN mRNA 248200 248979 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 248200 248979 500 + . . scaffold1892 GLEAN mRNA 248199 248979 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 248199 248979 595 + . . scaffold1892 GLEAN mRNA 248199 248950 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 248199 248950 695 + . . scaffold1892 GLEAN mRNA 248199 248950 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 248199 248950 336 + . . scaffold1892 GLEAN mRNA 255274 255304 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 255274 255304 62 + . . scaffold1892 GLEAN mRNA 264031 264650 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 264031 264650 896 + . . scaffold1892 GLEAN mRNA 264031 264650 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 264031 264650 900 + . . scaffold1892 GLEAN mRNA 269995 271078 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 269995 271078 1338 + . . scaffold1892 GLEAN mRNA 272853 272903 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 272853 272903 86 + . . scaffold1892 GLEAN mRNA 272845 272902 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 272845 272902 64 + . . scaffold1892 GLEAN mRNA 272842 272903 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 272842 272903 72 + . . scaffold1892 GLEAN mRNA 275008 275210 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 275008 275210 181 + . . scaffold1892 GLEAN mRNA 274951 275210 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 274951 275210 238 + . . scaffold1892 GLEAN mRNA 276727 276906 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 276727 276906 198 + . . scaffold43598 GLEAN mRNA 44337 44385 0.9966 - . ID=CGI_10011323; scaffold43598 TRF Tandem_Repeat 44337 44385 98 + . . scaffold43598 GLEAN mRNA 216266 216315 0.996012 - . ID=CGI_10011326; scaffold43598 TRF Tandem_Repeat 216266 216315 55 + . . scaffold43598 GLEAN mRNA 228444 228515 0.999333 - . ID=CGI_10011327; scaffold43598 TRF Tandem_Repeat 228444 228515 144 + . . scaffold43598 GLEAN mRNA 229348 229382 0.999333 - . ID=CGI_10011327; scaffold43598 TRF Tandem_Repeat 229348 229382 70 + . . scaffold43598 GLEAN mRNA 238744 238800 0.593391 + . ID=CGI_10011328; scaffold43598 TRF Tandem_Repeat 238744 238800 89 + . . scaffold43598 GLEAN mRNA 261629 261733 0.999992 - . ID=CGI_10011329; scaffold43598 TRF Tandem_Repeat 261629 261733 103 + . . scaffold43598 GLEAN mRNA 261723 261774 0.999992 - . ID=CGI_10011329; scaffold43598 TRF Tandem_Repeat 261723 261774 59 + . . scaffold43598 GLEAN mRNA 263029 263184 0.999992 - . ID=CGI_10011329; scaffold43598 TRF Tandem_Repeat 263029 263184 276 + . . scaffold43598 GLEAN mRNA 263650 264444 0.999992 - . ID=CGI_10011329; scaffold43598 TRF Tandem_Repeat 263650 264444 700 + . . scaffold43598 GLEAN mRNA 265718 266673 0.999992 - . ID=CGI_10011329; scaffold43598 TRF Tandem_Repeat 265718 266673 1184 + . . scaffold895 GLEAN mRNA 134329 134362 0.90891 - . ID=CGI_10011332; scaffold895 TRF Tandem_Repeat 134329 134362 52 + . . scaffold895 GLEAN mRNA 139197 140465 0.90891 - . ID=CGI_10011332; scaffold895 TRF Tandem_Repeat 139197 140465 2130 + . . scaffold895 GLEAN mRNA 161954 162058 0.499351 - . ID=CGI_10011334; scaffold895 TRF Tandem_Repeat 161954 162058 192 + . . scaffold895 GLEAN mRNA 163065 163098 0.499351 - . ID=CGI_10011334; scaffold895 TRF Tandem_Repeat 163065 163098 54 + . . scaffold895 GLEAN mRNA 175138 175284 0.999921 + . ID=CGI_10011335; scaffold895 WUBlastX DNA_Harbinger 175138 175284 44 + . . scaffold895 GLEAN mRNA 193057 193092 0.963467 - . ID=CGI_10011336; scaffold895 TRF Tandem_Repeat 193057 193092 72 + . . scaffold895 GLEAN mRNA 197719 198208 0.963467 - . ID=CGI_10011336; scaffold895 TRF Tandem_Repeat 197719 198208 558 + . . scaffold895 GLEAN mRNA 202266 202375 0.963467 - . ID=CGI_10011336; scaffold895 TRF Tandem_Repeat 202266 202375 193 + . . scaffold895 GLEAN mRNA 221310 221570 0.999846 + . ID=CGI_10011337; scaffold895 TRF Tandem_Repeat 221310 221570 323 + . . scaffold895 GLEAN mRNA 221314 221540 0.999846 + . ID=CGI_10011337; scaffold895 TRF Tandem_Repeat 221314 221540 375 + . . scaffold895 GLEAN mRNA 222855 223080 0.999846 + . ID=CGI_10011337; scaffold895 TRF Tandem_Repeat 222855 223080 353 + . . scaffold895 GLEAN mRNA 223388 223613 0.999846 + . ID=CGI_10011337; scaffold895 TRF Tandem_Repeat 223388 223613 353 + . . scaffold773 GLEAN mRNA 4994 5107 0.834219 - . ID=CGI_10011340; scaffold773 TRF Tandem_Repeat 4994 5107 174 + . . scaffold773 GLEAN mRNA 4994 5107 0.834219 - . ID=CGI_10011340; scaffold773 TRF Tandem_Repeat 4994 5107 174 + . . scaffold773 GLEAN mRNA 4994 5107 0.834219 - . ID=CGI_10011340; scaffold773 TRF Tandem_Repeat 4994 5107 174 + . . scaffold773 GLEAN mRNA 9911 9944 0.52374 - . ID=CGI_10011341; scaffold773 TRF Tandem_Repeat 9911 9944 50 + . . scaffold773 GLEAN mRNA 11752 11799 0.52374 - . ID=CGI_10011341; scaffold773 TRF Tandem_Repeat 11752 11799 96 + . . scaffold773 GLEAN mRNA 15163 15624 0.52374 - . ID=CGI_10011341; scaffold773 WUBlastX DNA_Crypton 15163 15624 161 - . . scaffold773 GLEAN mRNA 15685 15855 0.52374 - . ID=CGI_10011341; scaffold773 WUBlastX DNA_Crypton 15685 15855 64 - . . scaffold773 GLEAN mRNA 10393 10809 0.52374 - . ID=CGI_10011341; scaffold773 WUBlastX LTR_Gypsy-Cigr 10393 10809 53 - . . scaffold773 GLEAN mRNA 10823 11098 0.52374 - . ID=CGI_10011341; scaffold773 WUBlastX LTR_Gypsy-Cigr 10823 11098 92 - . . scaffold773 GLEAN mRNA 10369 10575 0.52374 - . ID=CGI_10011341; scaffold773 WUBlastX LTR_Copia 10369 10575 55 - . . scaffold773 GLEAN mRNA 10324 10494 0.52374 - . ID=CGI_10011341; scaffold773 WUBlastX LTR_Gypsy 10324 10494 23 - . . scaffold773 GLEAN mRNA 16216 16575 0.52374 - . ID=CGI_10011341; scaffold773 WUBlastX DNA_Crypton 16216 16575 110 - . . scaffold773 GLEAN mRNA 111868 112017 0.889313 - . ID=CGI_10011343; scaffold773 TRF Tandem_Repeat 111868 112017 255 + . . scaffold773 GLEAN mRNA 142896 142940 0.840493 - . ID=CGI_10011344; scaffold773 TRF Tandem_Repeat 142896 142940 90 + . . scaffold773 GLEAN mRNA 143624 143689 0.840493 - . ID=CGI_10011344; scaffold773 TRF Tandem_Repeat 143624 143689 114 + . . scaffold773 GLEAN mRNA 143780 143825 0.840493 - . ID=CGI_10011344; scaffold773 TRF Tandem_Repeat 143780 143825 92 + . . scaffold773 GLEAN mRNA 144127 144156 0.840493 - . ID=CGI_10011344; scaffold773 TRF Tandem_Repeat 144127 144156 60 + . . scaffold773 GLEAN mRNA 144463 144523 0.840493 - . ID=CGI_10011344; scaffold773 TRF Tandem_Repeat 144463 144523 61 + . . scaffold773 GLEAN mRNA 147209 147254 0.840493 - . ID=CGI_10011344; scaffold773 TRF Tandem_Repeat 147209 147254 92 + . . scaffold773 GLEAN mRNA 147254 147306 0.840493 - . ID=CGI_10011344; scaffold773 TRF Tandem_Repeat 147254 147306 88 + . . scaffold773 GLEAN mRNA 148975 149004 0.840493 - . ID=CGI_10011344; scaffold773 TRF Tandem_Repeat 148975 149004 60 + . . scaffold773 GLEAN mRNA 149004 149034 0.840493 - . ID=CGI_10011344; scaffold773 TRF Tandem_Repeat 149004 149034 53 + . . scaffold773 GLEAN mRNA 151324 151680 0.840493 - . ID=CGI_10011344; scaffold773 WUBlastX LINE_L2 151324 151680 113 + . . scaffold773 GLEAN mRNA 150710 150892 0.840493 - . ID=CGI_10011344; scaffold773 WUBlastX LINE_L2 150710 150892 40 + . . scaffold773 GLEAN mRNA 150756 150938 0.840493 - . ID=CGI_10011344; scaffold773 WUBlastX LINE_L2 150756 150938 30 + . . scaffold773 GLEAN mRNA 150882 150950 0.840493 - . ID=CGI_10011344; scaffold773 WUBlastX LINE_L2 150882 150950 25 + . . scaffold773 GLEAN mRNA 150964 151032 0.840493 - . ID=CGI_10011344; scaffold773 WUBlastX LINE_L2 150964 151032 29 + . . scaffold773 GLEAN mRNA 151156 151680 0.840493 - . ID=CGI_10011344; scaffold773 WUBlastX LINE_L2 151156 151680 64 + . . scaffold773 GLEAN mRNA 194504 194590 0.998027 + . ID=CGI_10011345; scaffold773 WUBlastX DNA_hAT-Tip100 194504 194590 25 + . . scaffold773 GLEAN mRNA 195324 195488 0.998027 + . ID=CGI_10011345; scaffold773 WUBlastX DNA_hAT-Tip100 195324 195488 25 + . . scaffold773 GLEAN mRNA 193015 193380 0.998027 + . ID=CGI_10011345; scaffold773 WUBlastX DNA_hAT-Tip100 193015 193380 36 + . . scaffold773 GLEAN mRNA 193778 194170 0.998027 + . ID=CGI_10011345; scaffold773 WUBlastX DNA_hAT 193778 194170 62 + . . scaffold773 GLEAN mRNA 193347 193778 0.998027 + . ID=CGI_10011345; scaffold773 WUBlastX DNA_hAT 193347 193778 99 + . . scaffold773 GLEAN mRNA 193874 194173 0.998027 + . ID=CGI_10011345; scaffold773 WUBlastX DNA_hAT 193874 194173 109 + . . scaffold773 GLEAN mRNA 236568 236594 0.138953 - . ID=CGI_10011348; scaffold773 TRF Tandem_Repeat 236568 236594 54 + . . scaffold773 GLEAN mRNA 244932 244968 0.138953 - . ID=CGI_10011348; scaffold773 TRF Tandem_Repeat 244932 244968 56 + . . scaffold773 GLEAN mRNA 239161 240051 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX DNA_Maverick 239161 240051 424 - . . scaffold773 GLEAN mRNA 240711 240761 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX DNA_Maverick 240711 240761 33 - . . scaffold773 GLEAN mRNA 240764 240871 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX DNA_Maverick 240764 240871 32 - . . scaffold773 GLEAN mRNA 240088 240432 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX DNA_Maverick 240088 240432 123 - . . scaffold773 GLEAN mRNA 243319 243492 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX DNA_Harbinger 243319 243492 84 + . . scaffold773 GLEAN mRNA 239008 239511 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX DNA_Maverick 239008 239511 207 - . . scaffold773 GLEAN mRNA 239998 240576 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX DNA_Maverick 239998 240576 28 - . . scaffold773 GLEAN mRNA 235331 235966 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX DNA_Maverick 235331 235966 410 - . . scaffold773 GLEAN mRNA 259016 259177 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX DNA_Harbinger 259016 259177 44 - . . scaffold773 GLEAN mRNA 267321 267572 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX LTR_Gypsy 267321 267572 46 + . . scaffold773 GLEAN mRNA 266819 266980 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX LTR_Gypsy 266819 266980 56 + . . scaffold773 GLEAN mRNA 267198 267527 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX LTR_Gypsy 267198 267527 27 + . . scaffold773 GLEAN mRNA 266699 267247 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX LTR_Gypsy 266699 267247 28 + . . scaffold773 GLEAN mRNA 267303 267530 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX LTR_Gypsy 267303 267530 62 + . . scaffold773 GLEAN mRNA 266714 267043 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX LTR_Copia 266714 267043 43 + . . scaffold1358 GLEAN mRNA 92152 92200 0.998702 + . ID=CGI_10011354; scaffold1358 TRF Tandem_Repeat 92152 92200 55 + . . scaffold1358 GLEAN mRNA 92152 92200 0.998702 + . ID=CGI_10011354; scaffold1358 TRF Tandem_Repeat 92152 92200 55 + . . scaffold1358 GLEAN mRNA 92152 92200 0.911767 - . ID=CGI_10011355; scaffold1358 TRF Tandem_Repeat 92152 92200 55 + . . scaffold1358 GLEAN mRNA 92152 92200 0.911767 - . ID=CGI_10011355; scaffold1358 TRF Tandem_Repeat 92152 92200 55 + . . scaffold1358 GLEAN mRNA 98464 98496 0.911767 - . ID=CGI_10011355; scaffold1358 TRF Tandem_Repeat 98464 98496 66 + . . scaffold1358 GLEAN mRNA 98494 98520 0.911767 - . ID=CGI_10011355; scaffold1358 TRF Tandem_Repeat 98494 98520 54 + . . scaffold1358 GLEAN mRNA 110170 110602 1 + . ID=CGI_10011356; scaffold1358 TRF Tandem_Repeat 110170 110602 329 + . . scaffold1358 GLEAN mRNA 110170 110780 1 + . ID=CGI_10011356; scaffold1358 TRF Tandem_Repeat 110170 110780 448 + . . scaffold1358 GLEAN mRNA 110612 111361 1 + . ID=CGI_10011356; scaffold1358 TRF Tandem_Repeat 110612 111361 290 + . . scaffold1358 GLEAN mRNA 110170 111361 1 + . ID=CGI_10011356; scaffold1358 TRF Tandem_Repeat 110170 111361 424 + . . scaffold1358 GLEAN mRNA 269723 269774 0.999979 - . ID=CGI_10011359; scaffold1358 TRF Tandem_Repeat 269723 269774 104 + . . scaffold926 GLEAN mRNA 203688 204248 0.999996 + . ID=CGI_10011367; scaffold926 WUBlastX DNA_Sola 203688 204248 164 + . . scaffold926 GLEAN mRNA 256107 256275 0.999113 - . ID=CGI_10011369; scaffold926 TRF Tandem_Repeat 256107 256275 338 + . . scaffold206 GLEAN mRNA 67616 67650 0.702119 + . ID=CGI_10011372; scaffold206 TRF Tandem_Repeat 67616 67650 70 + . . scaffold206 GLEAN mRNA 69409 69952 0.702119 + . ID=CGI_10011372; scaffold206 TRF Tandem_Repeat 69409 69952 739 + . . scaffold206 GLEAN mRNA 76416 76665 0.702119 + . ID=CGI_10011372; scaffold206 TRF Tandem_Repeat 76416 76665 182 + . . scaffold206 GLEAN mRNA 76398 76728 0.702119 + . ID=CGI_10011372; scaffold206 TRF Tandem_Repeat 76398 76728 311 + . . scaffold206 GLEAN mRNA 78265 78478 0.702119 + . ID=CGI_10011372; scaffold206 TRF Tandem_Repeat 78265 78478 170 + . . scaffold206 GLEAN mRNA 78703 79244 0.702119 + . ID=CGI_10011372; scaffold206 TRF Tandem_Repeat 78703 79244 426 + . . scaffold206 GLEAN mRNA 79716 79805 0.702119 + . ID=CGI_10011372; scaffold206 WUBlastX LTR_Gypsy 79716 79805 22 + . . scaffold206 GLEAN mRNA 80148 80603 0.702119 + . ID=CGI_10011372; scaffold206 WUBlastX LTR_Gypsy 80148 80603 129 + . . scaffold206 GLEAN mRNA 70824 70871 0.702119 + . ID=CGI_10011372; scaffold206 WUBlastX LINE_RTE-X 70824 70871 26 + . . scaffold206 GLEAN mRNA 80238 81962 0.702119 + . ID=CGI_10011372; scaffold206 WUBlastX LTR_Gypsy 80238 81962 710 + . . scaffold206 GLEAN mRNA 81372 82139 0.702119 + . ID=CGI_10011372; scaffold206 WUBlastX LTR_Gypsy 81372 82139 236 + . . scaffold206 GLEAN mRNA 113404 113803 0.999996 - . ID=CGI_10011373; scaffold206 TRF Tandem_Repeat 113404 113803 277 + . . scaffold206 GLEAN mRNA 113574 113763 0.999996 - . ID=CGI_10011373; scaffold206 TRF Tandem_Repeat 113574 113763 118 + . . scaffold206 GLEAN mRNA 128213 128449 0.999975 - . ID=CGI_10011374; scaffold206 WUBlastX DNA_En-Spm 128213 128449 78 - . . scaffold206 GLEAN mRNA 128162 128464 0.999975 - . ID=CGI_10011374; scaffold206 WUBlastX DNA_En-Spm 128162 128464 78 - . . scaffold206 GLEAN mRNA 128057 128494 0.999975 - . ID=CGI_10011374; scaffold206 WUBlastX DNA_En-Spm 128057 128494 57 - . . scaffold206 GLEAN mRNA 128485 128706 0.999975 - . ID=CGI_10011374; scaffold206 WUBlastX DNA_En-Spm 128485 128706 95 - . . scaffold206 GLEAN mRNA 131337 131406 0.999975 - . ID=CGI_10011374; scaffold206 TRF Tandem_Repeat 131337 131406 140 + . . scaffold206 GLEAN mRNA 163134 163169 0.999949 + . ID=CGI_10011377; scaffold206 TRF Tandem_Repeat 163134 163169 54 + . . scaffold206 GLEAN mRNA 179562 179620 0.996212 + . ID=CGI_10011378; scaffold206 TRF Tandem_Repeat 179562 179620 109 + . . scaffold206 GLEAN mRNA 182142 182588 0.998688 - . ID=CGI_10011379; scaffold206 WUBlastX LTR_ERV1 182142 182588 52 - . . scaffold206 GLEAN mRNA 190179 190207 0.531008 + . ID=CGI_10011380; scaffold206 TRF Tandem_Repeat 190179 190207 58 + . . scaffold206 GLEAN mRNA 197520 197725 0.531008 + . ID=CGI_10011380; scaffold206 TRF Tandem_Repeat 197520 197725 300 + . . scaffold206 GLEAN mRNA 210689 210749 0.999647 - . ID=CGI_10011381; scaffold206 TRF Tandem_Repeat 210689 210749 77 + . . scaffold43608 GLEAN mRNA 15096 15458 0.825558 - . ID=CGI_10011388; scaffold43608 WUBlastX DNA_TcMar-Marin 15096 15458 83 + . . scaffold43608 GLEAN mRNA 14610 14705 0.825558 - . ID=CGI_10011388; scaffold43608 WUBlastX DNA_TcMar-Marin 14610 14705 30 + . . scaffold43608 GLEAN mRNA 47375 47433 1 - . ID=CGI_10011392; scaffold43608 TRF Tandem_Repeat 47375 47433 118 + . . scaffold43608 GLEAN mRNA 50365 50417 1 - . ID=CGI_10011392; scaffold43608 TRF Tandem_Repeat 50365 50417 88 + . . scaffold43608 GLEAN mRNA 77059 77103 0.728287 - . ID=CGI_10011393; scaffold43608 TRF Tandem_Repeat 77059 77103 90 + . . scaffold43608 GLEAN mRNA 90909 90949 0.917031 - . ID=CGI_10011396; scaffold43608 TRF Tandem_Repeat 90909 90949 50 + . . scaffold43608 GLEAN mRNA 173127 173193 0.39073 + . ID=CGI_10011399; scaffold43608 TRF Tandem_Repeat 173127 173193 56 + . . scaffold43608 GLEAN mRNA 173145 173195 0.39073 + . ID=CGI_10011399; scaffold43608 TRF Tandem_Repeat 173145 173195 57 + . . scaffold43608 GLEAN mRNA 195440 195562 0.999918 - . ID=CGI_10011400; scaffold43608 WUBlastX LTR_Copia 195440 195562 23 + . . scaffold43608 GLEAN mRNA 195518 195562 0.6496 + . ID=CGI_10011401; scaffold43608 WUBlastX LTR_Copia 195440 195562 23 + . . scaffold43608 GLEAN mRNA 222374 222399 0.992581 - . ID=CGI_10011402; scaffold43608 TRF Tandem_Repeat 222374 222399 52 + . . scaffold43608 GLEAN mRNA 242471 242509 0.727472 - . ID=CGI_10011404; scaffold43608 TRF Tandem_Repeat 242471 242509 78 + . . scaffold43616 GLEAN mRNA 7622 7786 0.544777 + . ID=CGI_10011407; scaffold43616 TRF Tandem_Repeat 7622 7786 156 + . . scaffold43616 GLEAN mRNA 14385 14426 0.544777 + . ID=CGI_10011407; scaffold43616 TRF Tandem_Repeat 14385 14426 77 + . . scaffold43616 GLEAN mRNA 24912 24968 0.982091 + . ID=CGI_10011409; scaffold43616 TRF Tandem_Repeat 24912 24968 105 + . . scaffold43616 GLEAN mRNA 36683 36729 0.499226 - . ID=CGI_10011411; scaffold43616 TRF Tandem_Repeat 36683 36729 94 + . . scaffold43616 GLEAN mRNA 92979 93048 1 + . ID=CGI_10011416; scaffold43616 TRF Tandem_Repeat 92979 93048 124 + . . scaffold43616 GLEAN mRNA 137034 137065 0.582182 - . ID=CGI_10011422; scaffold43616 TRF Tandem_Repeat 137034 137065 64 + . . scaffold43616 GLEAN mRNA 205179 205319 0.700682 + . ID=CGI_10011425; scaffold43616 WUBlastX LINE_RTE-X 205179 205319 32 - . . scaffold43616 GLEAN mRNA 197050 197760 0.700682 + . ID=CGI_10011425; scaffold43616 WUBlastX LINE_RTE-X 197050 197760 224 - . . scaffold43616 GLEAN mRNA 197744 198022 0.700682 + . ID=CGI_10011425; scaffold43616 WUBlastX LINE_RTE-X 197744 198022 168 - . . scaffold43616 GLEAN mRNA 198422 199459 0.700682 + . ID=CGI_10011425; scaffold43616 WUBlastX LINE_RTE-X 198422 199459 627 - . . scaffold43616 GLEAN mRNA 199465 199872 0.700682 + . ID=CGI_10011425; scaffold43616 WUBlastX LINE_RTE-X 199465 199872 209 - . . scaffold43616 GLEAN mRNA 205391 206047 0.700682 + . ID=CGI_10011425; scaffold43616 WUBlastX LINE_RTE-X 205391 206047 405 - . . scaffold43616 GLEAN mRNA 198131 199444 0.700682 + . ID=CGI_10011425; scaffold43616 WUBlastX LINE_L2 198131 199444 60 - . . scaffold43616 GLEAN mRNA 230645 230682 0.998638 + . ID=CGI_10011426; scaffold43616 TRF Tandem_Repeat 230645 230682 76 + . . scaffold43616 GLEAN mRNA 231011 231068 0.998638 + . ID=CGI_10011426; scaffold43616 TRF Tandem_Repeat 231011 231068 107 + . . scaffold43616 GLEAN mRNA 233492 233525 0.998638 + . ID=CGI_10011426; scaffold43616 TRF Tandem_Repeat 233492 233525 52 + . . scaffold43616 GLEAN mRNA 234953 235866 0.998638 + . ID=CGI_10011426; scaffold43616 TRF Tandem_Repeat 234953 235866 1385 + . . scaffold400 GLEAN mRNA 20320 20444 0.999676 - . ID=CGI_10011430; scaffold400 TRF Tandem_Repeat 20320 20444 216 + . . scaffold400 GLEAN mRNA 36951 36992 0.999676 - . ID=CGI_10011430; scaffold400 TRF Tandem_Repeat 36951 36992 84 + . . scaffold400 GLEAN mRNA 38380 38471 0.999676 - . ID=CGI_10011430; scaffold400 TRF Tandem_Repeat 38380 38471 157 + . . scaffold400 GLEAN mRNA 39005 39078 0.999676 - . ID=CGI_10011430; scaffold400 TRF Tandem_Repeat 39005 39078 148 + . . scaffold400 GLEAN mRNA 46202 46280 0.975212 + . ID=CGI_10011431; scaffold400 TRF Tandem_Repeat 46202 46280 158 + . . scaffold400 GLEAN mRNA 57119 57408 0.975212 + . ID=CGI_10011431; scaffold400 TRF Tandem_Repeat 57119 57408 158 + . . scaffold400 GLEAN mRNA 60359 60524 0.975212 + . ID=CGI_10011431; scaffold400 TRF Tandem_Repeat 60359 60524 142 + . . scaffold400 GLEAN mRNA 84090 84206 0.998568 - . ID=CGI_10011433; scaffold400 TRF Tandem_Repeat 84090 84206 99 + . . scaffold400 GLEAN mRNA 84240 84452 0.998568 - . ID=CGI_10011433; scaffold400 TRF Tandem_Repeat 84240 84452 206 + . . scaffold400 GLEAN mRNA 84253 84452 0.998568 - . ID=CGI_10011433; scaffold400 TRF Tandem_Repeat 84253 84452 318 + . . scaffold400 GLEAN mRNA 94087 94170 0.998568 - . ID=CGI_10011433; scaffold400 TRF Tandem_Repeat 94087 94170 57 + . . scaffold400 GLEAN mRNA 94374 94423 0.998568 - . ID=CGI_10011433; scaffold400 TRF Tandem_Repeat 94374 94423 100 + . . scaffold400 GLEAN mRNA 164874 165673 0.331492 + . ID=CGI_10011434; scaffold400 TRF Tandem_Repeat 164874 165673 740 + . . scaffold400 GLEAN mRNA 183439 183500 0.999999 - . ID=CGI_10011436; scaffold400 TRF Tandem_Repeat 183439 183500 117 + . . scaffold400 GLEAN mRNA 197113 197310 0.813725 - . ID=CGI_10011437; scaffold400 WUBlastX LINE_L1-Tx1 197113 197310 100 - . . scaffold400 GLEAN mRNA 204732 205178 0.813725 - . ID=CGI_10011437; scaffold400 WUBlastX RC_Helitron 204732 205178 95 - . . scaffold400 GLEAN mRNA 196960 197313 0.813725 - . ID=CGI_10011437; scaffold400 WUBlastX LINE_L1-Tx1 196960 197313 88 - . . scaffold400 GLEAN mRNA 197504 197776 0.813725 - . ID=CGI_10011437; scaffold400 WUBlastX LINE_L1-Tx1 197504 197776 45 - . . scaffold400 GLEAN mRNA 266613 266933 0.544852 - . ID=CGI_10011440; scaffold400 WUBlastX LINE_CR1 266613 266933 45 - . . scaffold400 GLEAN mRNA 266436 267059 0.544852 - . ID=CGI_10011440; scaffold400 WUBlastX LINE_CR1 266436 267059 44 - . . scaffold400 GLEAN mRNA 265617 266861 0.544852 - . ID=CGI_10011440; scaffold400 WUBlastX LINE_CR1-L2 265617 266861 404 - . . scaffold400 GLEAN mRNA 264815 265330 0.544852 - . ID=CGI_10011440; scaffold400 WUBlastX LINE_L2 264815 265330 107 - . . scaffold400 GLEAN mRNA 265025 265621 0.544852 - . ID=CGI_10011440; scaffold400 WUBlastX LINE_CR1-L2 265025 265621 461 - . . scaffold400 GLEAN mRNA 285230 285330 0.47452 - . ID=CGI_10011441; scaffold400 TRF Tandem_Repeat 285230 285330 87 + . . scaffold400 GLEAN mRNA 285325 285416 0.47452 - . ID=CGI_10011441; scaffold400 TRF Tandem_Repeat 285325 285416 96 + . . scaffold400 GLEAN mRNA 285986 286208 0.47452 - . ID=CGI_10011441; scaffold400 TRF Tandem_Repeat 285986 286208 139 + . . scaffold400 GLEAN mRNA 286013 286151 0.47452 - . ID=CGI_10011441; scaffold400 TRF Tandem_Repeat 286013 286151 84 + . . scaffold400 GLEAN mRNA 288120 289382 0.47452 - . ID=CGI_10011441; scaffold400 WUBlastX DNA_Sola 288120 289382 53 + . . scaffold400 GLEAN mRNA 288573 289418 0.47452 - . ID=CGI_10011441; scaffold400 WUBlastX DNA_Sola 288573 289418 266 + . . scaffold1740 GLEAN mRNA 30710 30850 0.498319 - . ID=CGI_10011442; scaffold1740 TRF Tandem_Repeat 30710 30850 129 + . . scaffold1740 GLEAN mRNA 51695 52180 0.885028 - . ID=CGI_10011443; scaffold1740 WUBlastX LTR_Gypsy 51695 52180 123 + . . scaffold1740 GLEAN mRNA 185766 185815 0.957793 - . ID=CGI_10011447; scaffold1740 TRF Tandem_Repeat 185766 185815 100 + . . scaffold1740 GLEAN mRNA 208365 208850 0.866192 - . ID=CGI_10011449; scaffold1740 WUBlastX DNA_Sola 208365 208850 33 - . . scaffold1740 GLEAN mRNA 209023 209190 0.866192 - . ID=CGI_10011449; scaffold1740 WUBlastX DNA_Sola 209023 209190 74 - . . scaffold1740 GLEAN mRNA 209811 210110 0.866192 - . ID=CGI_10011449; scaffold1740 WUBlastX DNA_Sola 209811 210110 22 - . . scaffold1740 GLEAN mRNA 251159 251458 0.985926 + . ID=CGI_10011450; scaffold1740 WUBlastX DNA_NOF? 251159 251458 71 - . . scaffold807 GLEAN mRNA 100023 101388 0.966284 - . ID=CGI_10011456; scaffold807 TRF Tandem_Repeat 100023 101388 1768 + . . scaffold807 GLEAN mRNA 100023 101388 0.966284 - . ID=CGI_10011456; scaffold807 TRF Tandem_Repeat 100023 101388 1765 + . . scaffold807 GLEAN mRNA 107704 107946 0.966284 - . ID=CGI_10011456; scaffold807 WUBlastX DNA_hAT 107704 107946 76 + . . scaffold807 GLEAN mRNA 120499 120568 0.991249 - . ID=CGI_10011457; scaffold807 TRF Tandem_Repeat 120499 120568 53 + . . scaffold807 GLEAN mRNA 122913 122960 0.991249 - . ID=CGI_10011457; scaffold807 TRF Tandem_Repeat 122913 122960 64 + . . scaffold807 GLEAN mRNA 128215 128280 0.991249 - . ID=CGI_10011457; scaffold807 TRF Tandem_Repeat 128215 128280 89 + . . scaffold807 GLEAN mRNA 146475 146504 0.991249 - . ID=CGI_10011457; scaffold807 TRF Tandem_Repeat 146475 146504 51 + . . scaffold807 GLEAN mRNA 147095 147153 0.991249 - . ID=CGI_10011457; scaffold807 TRF Tandem_Repeat 147095 147153 75 + . . scaffold807 GLEAN mRNA 147095 147153 0.991249 - . ID=CGI_10011457; scaffold807 TRF Tandem_Repeat 147095 147153 75 + . . scaffold807 GLEAN mRNA 169216 169263 0.351868 + . ID=CGI_10011458; scaffold807 TRF Tandem_Repeat 169216 169263 96 + . . scaffold807 GLEAN mRNA 173133 173162 0.351868 + . ID=CGI_10011458; scaffold807 TRF Tandem_Repeat 173133 173162 60 + . . scaffold807 GLEAN mRNA 164808 164914 0.351868 + . ID=CGI_10011458; scaffold807 WUBlastX LTR_DIRS 164720 164914 68 + . . scaffold807 GLEAN mRNA 258330 258857 0.999984 - . ID=CGI_10011463; scaffold807 WUBlastX LTR_Gypsy 258330 258857 25 - . . scaffold1551 GLEAN mRNA 58540 59203 0.263167 + . ID=CGI_10011471; scaffold1551 TRF Tandem_Repeat 58540 59203 1031 + . . scaffold1551 GLEAN mRNA 61872 62195 0.263167 + . ID=CGI_10011471; scaffold1551 TRF Tandem_Repeat 61872 62195 447 + . . scaffold1551 GLEAN mRNA 61921 62189 0.263167 + . ID=CGI_10011471; scaffold1551 TRF Tandem_Repeat 61921 62189 367 + . . scaffold1551 GLEAN mRNA 55022 55159 0.263167 + . ID=CGI_10011471; scaffold1551 WUBlastX LTR_Gypsy-Cigr 55022 55159 84 - . . scaffold1551 GLEAN mRNA 54977 55156 0.263167 + . ID=CGI_10011471; scaffold1551 WUBlastX LTR_Gypsy-Cigr 54977 55156 71 - . . scaffold1551 GLEAN mRNA 66238 66273 0.263167 + . ID=CGI_10011471; scaffold1551 TRF Tandem_Repeat 66238 66273 72 + . . scaffold1551 GLEAN mRNA 72975 73748 0.263167 + . ID=CGI_10011471; scaffold1551 WUBlastX LTR_Ngaro 72975 73748 93 + . . scaffold1551 GLEAN mRNA 74022 74393 0.263167 + . ID=CGI_10011471; scaffold1551 WUBlastX LTR_Ngaro 74022 74393 200 + . . scaffold1551 GLEAN mRNA 74388 74726 0.263167 + . ID=CGI_10011471; scaffold1551 WUBlastX LTR_Ngaro 74388 74726 232 + . . scaffold1551 GLEAN mRNA 75232 76029 0.263167 + . ID=CGI_10011471; scaffold1551 WUBlastX LTR_Ngaro 75232 76029 280 + . . scaffold1551 GLEAN mRNA 74744 75319 0.263167 + . ID=CGI_10011471; scaffold1551 WUBlastX LTR_Ngaro 74744 75319 279 + . . scaffold1551 GLEAN mRNA 73714 74142 0.263167 + . ID=CGI_10011471; scaffold1551 WUBlastX LTR_Ngaro 73714 74142 165 + . . scaffold1551 GLEAN mRNA 72708 73511 0.263167 + . ID=CGI_10011471; scaffold1551 WUBlastX LTR_Ngaro 72708 73511 147 + . . scaffold1551 GLEAN mRNA 76018 76131 0.263167 + . ID=CGI_10011471; scaffold1551 WUBlastX LTR_Ngaro 76018 76131 24 + . . scaffold1551 GLEAN mRNA 72864 73511 0.263167 + . ID=CGI_10011471; scaffold1551 WUBlastX LTR_Ngaro 72864 73511 199 + . . scaffold1551 GLEAN mRNA 84106 84141 0.263167 + . ID=CGI_10011471; scaffold1551 TRF Tandem_Repeat 84106 84141 63 + . . scaffold1551 GLEAN mRNA 130056 130142 0.776736 - . ID=CGI_10011474; scaffold1551 WUBlastX LINE_RTE-BovB 130056 130142 26 - . . scaffold1551 GLEAN mRNA 133243 133284 0.564223 + . ID=CGI_10011475; scaffold1551 TRF Tandem_Repeat 133243 133284 84 + . . scaffold1551 GLEAN mRNA 156021 156118 0.904447 + . ID=CGI_10011477; scaffold1551 TRF Tandem_Repeat 156021 156118 189 + . . scaffold1551 GLEAN mRNA 214123 214147 0.999999 - . ID=CGI_10011480; scaffold1551 TRF Tandem_Repeat 214123 214147 50 + . . scaffold1551 GLEAN mRNA 215590 215630 0.999999 - . ID=CGI_10011480; scaffold1551 TRF Tandem_Repeat 215590 215630 82 + . . scaffold1551 GLEAN mRNA 243943 244810 0.417664 - . ID=CGI_10011482; scaffold1551 TRF Tandem_Repeat 243943 244810 1164 + . . scaffold1551 GLEAN mRNA 245696 245773 0.417664 - . ID=CGI_10011482; scaffold1551 TRF Tandem_Repeat 245696 245773 156 + . . scaffold1551 GLEAN mRNA 286102 286139 1 + . ID=CGI_10011483; scaffold1551 TRF Tandem_Repeat 286102 286139 76 + . . scaffold724 GLEAN mRNA 25425 25467 0.999674 - . ID=CGI_10011484; scaffold724 TRF Tandem_Repeat 25425 25467 59 + . . scaffold724 GLEAN mRNA 43956 44019 0.999999 + . ID=CGI_10011487; scaffold724 TRF Tandem_Repeat 43956 44019 110 + . . scaffold724 GLEAN mRNA 107082 107208 1 - . ID=CGI_10011493; scaffold724 TRF Tandem_Repeat 107082 107208 141 + . . scaffold724 GLEAN mRNA 172327 172399 1 - . ID=CGI_10011498; scaffold724 TRF Tandem_Repeat 172327 172399 146 + . . scaffold724 GLEAN mRNA 174080 174137 1 - . ID=CGI_10011498; scaffold724 TRF Tandem_Repeat 174080 174137 116 + . . scaffold724 GLEAN mRNA 174440 174488 1 - . ID=CGI_10011498; scaffold724 TRF Tandem_Repeat 174440 174488 55 + . . scaffold724 GLEAN mRNA 199999 200319 0.996199 + . ID=CGI_10011500; scaffold724 WUBlastX LTR_Gypsy 199999 200319 42 + . . scaffold724 GLEAN mRNA 214310 214334 0.325811 + . ID=CGI_10011501; scaffold724 TRF Tandem_Repeat 214310 214334 50 + . . scaffold724 GLEAN mRNA 221191 221384 0.325811 + . ID=CGI_10011501; scaffold724 TRF Tandem_Repeat 221191 221384 234 + . . scaffold724 GLEAN mRNA 222015 222046 0.325811 + . ID=CGI_10011501; scaffold724 TRF Tandem_Repeat 222015 222046 64 + . . scaffold724 GLEAN mRNA 222658 222682 0.325811 + . ID=CGI_10011501; scaffold724 TRF Tandem_Repeat 222658 222682 50 + . . scaffold724 GLEAN mRNA 250110 250231 0.643689 - . ID=CGI_10011502; scaffold724 TRF Tandem_Repeat 250110 250231 87 + . . scaffold43624 GLEAN mRNA 106913 107155 0.981478 + . ID=CGI_10011506; scaffold43624 WUBlastX DNA_P 106913 107155 71 + . . scaffold43624 GLEAN mRNA 171548 171597 0.89182 - . ID=CGI_10011508; scaffold43624 TRF Tandem_Repeat 171548 171597 100 + . . scaffold43624 GLEAN mRNA 259085 259110 1 - . ID=CGI_10011510; scaffold43624 TRF Tandem_Repeat 259085 259110 52 + . . scaffold43624 GLEAN mRNA 290483 290549 0.999421 - . ID=CGI_10011515; scaffold43624 TRF Tandem_Repeat 290483 290549 134 + . . scaffold43624 GLEAN mRNA 285044 285469 0.999421 - . ID=CGI_10011515; scaffold43624 WUBlastX LINE_L2 285044 285469 101 + . . scaffold43630 GLEAN mRNA 38248 38307 1 + . ID=CGI_10011521; scaffold43630 TRF Tandem_Repeat 38248 38307 93 + . . scaffold43630 GLEAN mRNA 45071 45610 1 + . ID=CGI_10011521; scaffold43630 TRF Tandem_Repeat 45071 45610 410 + . . scaffold43630 GLEAN mRNA 45201 45607 1 + . ID=CGI_10011521; scaffold43630 TRF Tandem_Repeat 45201 45607 225 + . . scaffold43630 GLEAN mRNA 45203 45610 1 + . ID=CGI_10011521; scaffold43630 TRF Tandem_Repeat 45203 45610 326 + . . scaffold43630 GLEAN mRNA 47933 47968 1 + . ID=CGI_10011521; scaffold43630 TRF Tandem_Repeat 47933 47968 72 + . . scaffold43630 GLEAN mRNA 69784 69841 0.96224 + . ID=CGI_10011522; scaffold43630 TRF Tandem_Repeat 69784 69841 116 + . . scaffold43630 GLEAN mRNA 74305 74336 0.96224 + . ID=CGI_10011522; scaffold43630 TRF Tandem_Repeat 74305 74336 64 + . . scaffold43630 GLEAN mRNA 93098 93147 0.962339 + . ID=CGI_10011523; scaffold43630 TRF Tandem_Repeat 93098 93147 57 + . . scaffold43630 GLEAN mRNA 93097 93139 0.962339 + . ID=CGI_10011523; scaffold43630 TRF Tandem_Repeat 93097 93139 70 + . . scaffold43630 GLEAN mRNA 94829 95517 0.962339 + . ID=CGI_10011523; scaffold43630 TRF Tandem_Repeat 94829 95517 778 + . . scaffold43630 GLEAN mRNA 102326 102364 0.900448 - . ID=CGI_10011524; scaffold43630 TRF Tandem_Repeat 102326 102364 78 + . . scaffold43630 GLEAN mRNA 109049 109095 0.900448 - . ID=CGI_10011524; scaffold43630 TRF Tandem_Repeat 109049 109095 94 + . . scaffold43630 GLEAN mRNA 124653 124697 0.996937 + . ID=CGI_10011525; scaffold43630 TRF Tandem_Repeat 124653 124697 90 + . . scaffold43630 GLEAN mRNA 135454 135528 0.996937 + . ID=CGI_10011525; scaffold43630 TRF Tandem_Repeat 135454 135528 150 + . . scaffold43630 GLEAN mRNA 131512 131691 0.996937 + . ID=CGI_10011525; scaffold43630 WUBlastX LINE_L1-Tx1 131512 131691 20 + . . scaffold43630 GLEAN mRNA 157866 157925 0.563743 + . ID=CGI_10011526; scaffold43630 TRF Tandem_Repeat 157866 157925 93 + . . scaffold43630 GLEAN mRNA 173986 174753 0.0301586 + . ID=CGI_10011528; scaffold43630 WUBlastX LTR_Gypsy 173986 174753 148 - . . scaffold43630 GLEAN mRNA 189030 189123 0.0301586 + . ID=CGI_10011528; scaffold43630 TRF Tandem_Repeat 189030 189123 163 + . . scaffold43630 GLEAN mRNA 189597 189642 0.0301586 + . ID=CGI_10011528; scaffold43630 TRF Tandem_Repeat 189597 189642 83 + . . scaffold43630 GLEAN mRNA 209290 209338 0.0301586 + . ID=CGI_10011528; scaffold43630 TRF Tandem_Repeat 209290 209338 89 + . . scaffold43630 GLEAN mRNA 209336 209368 0.0301586 + . ID=CGI_10011528; scaffold43630 TRF Tandem_Repeat 209336 209368 66 + . . scaffold43630 GLEAN mRNA 209564 209600 0.0301586 + . ID=CGI_10011528; scaffold43630 TRF Tandem_Repeat 209564 209600 74 + . . scaffold43630 GLEAN mRNA 214303 214346 0.0301586 + . ID=CGI_10011528; scaffold43630 TRF Tandem_Repeat 214303 214346 88 + . . scaffold43630 GLEAN mRNA 225435 225485 0.0301586 + . ID=CGI_10011528; scaffold43630 TRF Tandem_Repeat 225435 225485 102 + . . scaffold43630 GLEAN mRNA 241897 241936 0.0301586 + . ID=CGI_10011528; scaffold43630 TRF Tandem_Repeat 241897 241936 80 + . . scaffold43630 GLEAN mRNA 243880 244899 0.0301586 + . ID=CGI_10011528; scaffold43630 WUBlastX DNA_TcMar-Tc1 243880 244899 370 - . . scaffold43630 GLEAN mRNA 271863 271958 0.934712 - . ID=CGI_10011530; scaffold43630 TRF Tandem_Repeat 271863 271958 119 + . . scaffold43634 GLEAN mRNA 60571 60612 0.67193 + . ID=CGI_10011531; scaffold43634 TRF Tandem_Repeat 60571 60612 59 + . . scaffold43634 GLEAN mRNA 63349 63501 0.67193 + . ID=CGI_10011531; scaffold43634 WUBlastX DNA_hAT-Ac 63349 63501 87 - . . scaffold43634 GLEAN mRNA 69227 69548 0.67193 + . ID=CGI_10011531; scaffold43634 TRF Tandem_Repeat 69227 69548 366 + . . scaffold43634 GLEAN mRNA 70082 70406 0.67193 + . ID=CGI_10011531; scaffold43634 TRF Tandem_Repeat 70082 70406 528 + . . scaffold43634 GLEAN mRNA 71539 71787 0.67193 + . ID=CGI_10011531; scaffold43634 WUBlastX DNA_Maverick 71539 71787 97 + . . scaffold43634 GLEAN mRNA 71832 71984 0.67193 + . ID=CGI_10011531; scaffold43634 WUBlastX DNA_Maverick 71832 71984 69 + . . scaffold43634 GLEAN mRNA 71377 71787 0.67193 + . ID=CGI_10011531; scaffold43634 WUBlastX DNA_Maverick 71377 71787 81 + . . scaffold43634 GLEAN mRNA 223331 223855 0.823589 - . ID=CGI_10011538; scaffold43634 WUBlastX LTR_Gypsy 223331 223855 70 - . . scaffold43634 GLEAN mRNA 223334 223774 0.823589 - . ID=CGI_10011538; scaffold43634 WUBlastX LTR_Gypsy 223334 223774 72 - . . scaffold43634 GLEAN mRNA 223382 223942 0.823589 - . ID=CGI_10011538; scaffold43634 WUBlastX LTR_Gypsy 223382 223942 66 - . . scaffold1883 GLEAN mRNA 58143 58242 0.999999 - . ID=CGI_10011542; scaffold1883 TRF Tandem_Repeat 58143 58242 163 + . . scaffold1883 GLEAN mRNA 60092 60318 0.999999 - . ID=CGI_10011542; scaffold1883 TRF Tandem_Repeat 60092 60318 216 + . . scaffold1883 GLEAN mRNA 77881 77932 0.999247 - . ID=CGI_10011543; scaffold1883 TRF Tandem_Repeat 77881 77932 77 + . . scaffold43648 GLEAN mRNA 54456 54985 0.961077 - . ID=CGI_10011582; scaffold43648 TRF Tandem_Repeat 54456 54985 559 + . . scaffold43648 GLEAN mRNA 59615 59667 0.961077 - . ID=CGI_10011582; scaffold43648 TRF Tandem_Repeat 59615 59667 83 + . . scaffold43648 GLEAN mRNA 98138 98172 0.502547 + . ID=CGI_10011584; scaffold43648 TRF Tandem_Repeat 98138 98172 70 + . . scaffold43648 GLEAN mRNA 97686 98132 0.502547 + . ID=CGI_10011584; scaffold43648 WUBlastX DNA_Crypton 97686 98132 49 + . . scaffold43648 GLEAN mRNA 157492 158698 0.915759 + . ID=CGI_10011587; scaffold43648 TRF Tandem_Repeat 157492 158698 1510 + . . scaffold43648 GLEAN mRNA 169319 169393 0.999999 - . ID=CGI_10011589; scaffold43648 TRF Tandem_Repeat 169319 169393 72 + . . scaffold43648 GLEAN mRNA 169308 169406 0.999999 - . ID=CGI_10011589; scaffold43648 TRF Tandem_Repeat 169308 169406 64 + . . scaffold43648 GLEAN mRNA 174226 174282 0.999999 - . ID=CGI_10011590; scaffold43648 TRF Tandem_Repeat 174226 174282 87 + . . scaffold43648 GLEAN mRNA 187326 187376 0.463455 - . ID=CGI_10011591; scaffold43648 TRF Tandem_Repeat 187326 187376 84 + . . scaffold43648 GLEAN mRNA 208633 208678 0.498825 + . ID=CGI_10011592; scaffold43648 TRF Tandem_Repeat 208633 208678 51 + . . scaffold43648 GLEAN mRNA 235871 236047 0.973881 - . ID=CGI_10011593; scaffold43648 WUBlastX DNA_Kolobok 235871 236047 77 + . . scaffold43648 GLEAN mRNA 236730 236921 0.973881 - . ID=CGI_10011593; scaffold43648 WUBlastX DNA_Kolobok 236730 236921 70 - . . scaffold43648 GLEAN mRNA 232888 233013 0.973881 - . ID=CGI_10011593; scaffold43648 WUBlastX DNA_Kolobok 232888 233013 73 + . . scaffold43648 GLEAN mRNA 232110 232649 0.973881 - . ID=CGI_10011593; scaffold43648 WUBlastX DNA_Kolobok 232110 232649 122 + . . scaffold43648 GLEAN mRNA 232227 232643 0.973881 - . ID=CGI_10011593; scaffold43648 WUBlastX DNA_Kolobok 232227 232643 152 + . . scaffold43648 GLEAN mRNA 232783 233010 0.973881 - . ID=CGI_10011593; scaffold43648 WUBlastX DNA_Kolobok 232783 233010 43 + . . scaffold43648 GLEAN mRNA 235511 235732 0.973881 - . ID=CGI_10011593; scaffold43648 WUBlastX DNA_Kolobok 235511 235732 56 + . . scaffold43648 GLEAN mRNA 236147 236326 0.973881 - . ID=CGI_10011593; scaffold43648 WUBlastX DNA_Kolobok 236147 236326 84 + . . scaffold43648 GLEAN mRNA 236620 236706 0.973881 - . ID=CGI_10011593; scaffold43648 WUBlastX DNA_Kolobok 236620 236706 20 + . . scaffold385 GLEAN mRNA 8677 8729 0.999946 + . ID=CGI_10011594; scaffold385 TRF Tandem_Repeat 8677 8729 99 + . . scaffold385 GLEAN mRNA 138566 138745 0.944104 - . ID=CGI_10011596; scaffold385 WUBlastX LINE_CR1 138566 138745 34 + . . scaffold385 GLEAN mRNA 138372 138572 0.944104 - . ID=CGI_10011596; scaffold385 WUBlastX LINE_CR1 138372 138572 39 + . . scaffold385 GLEAN mRNA 138721 138831 0.944104 - . ID=CGI_10011596; scaffold385 WUBlastX LINE_CR1 138721 138831 26 + . . scaffold385 GLEAN mRNA 161645 161788 0.981213 - . ID=CGI_10011599; scaffold385 TRF Tandem_Repeat 161645 161788 216 + . . scaffold385 GLEAN mRNA 162172 162237 0.981213 - . ID=CGI_10011599; scaffold385 TRF Tandem_Repeat 162172 162237 132 + . . scaffold385 GLEAN mRNA 276652 277014 0.998167 - . ID=CGI_10011601; scaffold385 WUBlastX DNA_TcMar-Tc1 276652 277014 80 + . . scaffold385 GLEAN mRNA 276034 276102 0.998167 - . ID=CGI_10011601; scaffold385 WUBlastX DNA_TcMar-Tc1 276034 276102 22 + . . scaffold385 GLEAN mRNA 276655 276936 0.998167 - . ID=CGI_10011601; scaffold385 WUBlastX DNA_TcMar-Tc1 276655 276936 99 + . . scaffold385 GLEAN mRNA 275556 275648 0.998167 - . ID=CGI_10011601; scaffold385 WUBlastX DNA_TcMar-Tc1 275556 275648 24 + . . scaffold385 GLEAN mRNA 276059 276652 0.998167 - . ID=CGI_10011601; scaffold385 WUBlastX DNA_TcMar-Tc1 276059 276652 44 + . . scaffold385 GLEAN mRNA 283602 283645 0.998167 - . ID=CGI_10011601; scaffold385 TRF Tandem_Repeat 283602 283645 70 + . . scaffold385 GLEAN mRNA 283615 283648 0.998167 - . ID=CGI_10011601; scaffold385 TRF Tandem_Repeat 283615 283648 50 + . . scaffold43662 GLEAN mRNA 88 393 0.836238 - . ID=CGI_10011602; scaffold43662 WUBlastX DNA_Kolobok-Hyd 88 570 43 - . . scaffold43662 GLEAN mRNA 217 393 0.836238 - . ID=CGI_10011602; scaffold43662 WUBlastX DNA_Kolobok-Hyd 217 570 63 - . . scaffold43662 GLEAN mRNA 283635 283680 0.996819 + . ID=CGI_10011612; scaffold43662 TRF Tandem_Repeat 283635 283680 92 + . . scaffold43662 GLEAN mRNA 283680 283723 0.996819 + . ID=CGI_10011612; scaffold43662 TRF Tandem_Repeat 283680 283723 88 + . . scaffold1527 GLEAN mRNA 159521 159803 0.77016 - . ID=CGI_10011614; scaffold1527 TRF Tandem_Repeat 159521 159803 204 + . . scaffold1527 GLEAN mRNA 159818 160345 0.77016 - . ID=CGI_10011614; scaffold1527 TRF Tandem_Repeat 159818 160345 643 + . . scaffold454 GLEAN mRNA 101425 101597 0.996665 - . ID=CGI_10011629; scaffold454 TRF Tandem_Repeat 101425 101597 123 + . . scaffold454 GLEAN mRNA 101401 101607 0.996665 - . ID=CGI_10011629; scaffold454 TRF Tandem_Repeat 101401 101607 110 + . . scaffold454 GLEAN mRNA 101619 101793 0.996665 - . ID=CGI_10011629; scaffold454 TRF Tandem_Repeat 101619 101793 79 + . . scaffold454 GLEAN mRNA 98723 99685 0.996665 - . ID=CGI_10011629; scaffold454 WUBlastX LINE_L2 98723 99685 515 - . . scaffold454 GLEAN mRNA 99589 100530 0.996665 - . ID=CGI_10011629; scaffold454 WUBlastX LINE_L2 99589 100530 301 - . . scaffold454 GLEAN mRNA 99589 100722 0.996665 - . ID=CGI_10011629; scaffold454 WUBlastX LINE_CR1-L2 99589 100722 162 - . . scaffold454 GLEAN mRNA 98073 98726 0.996665 - . ID=CGI_10011629; scaffold454 WUBlastX LINE_L2 98073 98726 501 - . . scaffold454 GLEAN mRNA 97785 98726 0.996665 - . ID=CGI_10011629; scaffold454 WUBlastX LINE_L2 97785 98726 230 - . . scaffold454 GLEAN mRNA 112193 112245 0.438612 - . ID=CGI_10011630; scaffold454 TRF Tandem_Repeat 112193 112245 106 + . . scaffold454 GLEAN mRNA 126760 126797 0.438612 - . ID=CGI_10011630; scaffold454 TRF Tandem_Repeat 126760 126797 60 + . . scaffold454 GLEAN mRNA 127843 128202 0.438612 - . ID=CGI_10011630; scaffold454 TRF Tandem_Repeat 127843 128202 486 + . . scaffold454 GLEAN mRNA 127843 128202 0.438612 - . ID=CGI_10011630; scaffold454 TRF Tandem_Repeat 127843 128202 486 + . . scaffold454 GLEAN mRNA 144919 145036 0.438612 - . ID=CGI_10011630; scaffold454 TRF Tandem_Repeat 144919 145036 96 + . . scaffold454 GLEAN mRNA 150238 150262 0.438612 - . ID=CGI_10011630; scaffold454 TRF Tandem_Repeat 150238 150262 50 + . . scaffold454 GLEAN mRNA 180733 180787 0.996819 - . ID=CGI_10011632; scaffold454 TRF Tandem_Repeat 180733 180787 57 + . . scaffold454 GLEAN mRNA 180731 180787 0.996819 - . ID=CGI_10011632; scaffold454 TRF Tandem_Repeat 180731 180787 82 + . . scaffold454 GLEAN mRNA 212420 212466 0.999992 + . ID=CGI_10011633; scaffold454 TRF Tandem_Repeat 212420 212466 94 + . . scaffold454 GLEAN mRNA 254943 255650 1 - . ID=CGI_10011637; scaffold454 TRF Tandem_Repeat 254943 255650 1030 + . . scaffold787 GLEAN mRNA 18693 18768 0.999948 - . ID=CGI_10011644; scaffold787 TRF Tandem_Repeat 18693 18768 84 + . . scaffold787 GLEAN mRNA 18661 18757 0.999948 - . ID=CGI_10011644; scaffold787 TRF Tandem_Repeat 18661 18757 131 + . . scaffold787 GLEAN mRNA 19225 19489 0.999948 - . ID=CGI_10011644; scaffold787 TRF Tandem_Repeat 19225 19489 437 + . . scaffold787 GLEAN mRNA 19961 20356 0.999948 - . ID=CGI_10011644; scaffold787 TRF Tandem_Repeat 19961 20356 390 + . . scaffold787 GLEAN mRNA 19941 20201 0.999948 - . ID=CGI_10011644; scaffold787 TRF Tandem_Repeat 19941 20201 369 + . . scaffold787 GLEAN mRNA 20694 20779 0.999948 - . ID=CGI_10011644; scaffold787 TRF Tandem_Repeat 20694 20779 59 + . . scaffold787 GLEAN mRNA 23872 24029 0.999948 - . ID=CGI_10011644; scaffold787 TRF Tandem_Repeat 23872 24029 104 + . . scaffold787 GLEAN mRNA 23915 24073 0.999948 - . ID=CGI_10011644; scaffold787 TRF Tandem_Repeat 23915 24073 137 + . . scaffold787 GLEAN mRNA 23942 24029 0.999948 - . ID=CGI_10011644; scaffold787 TRF Tandem_Repeat 23942 24029 57 + . . scaffold787 GLEAN mRNA 23989 24055 0.999948 - . ID=CGI_10011644; scaffold787 TRF Tandem_Repeat 23989 24055 64 + . . scaffold787 GLEAN mRNA 161004 161040 0.250339 + . ID=CGI_10011647; scaffold787 TRF Tandem_Repeat 161004 161040 56 + . . scaffold787 GLEAN mRNA 191677 192839 0.666952 + . ID=CGI_10011648; scaffold787 TRF Tandem_Repeat 191677 192839 1717 + . . scaffold787 GLEAN mRNA 230259 230383 0.970021 - . ID=CGI_10011650; scaffold787 TRF Tandem_Repeat 230259 230383 90 + . . scaffold787 GLEAN mRNA 233852 235051 0.970021 - . ID=CGI_10011650; scaffold787 WUBlastX DNA_hAT-Blackja 233852 235051 351 - . . scaffold787 GLEAN mRNA 233858 234856 0.970021 - . ID=CGI_10011650; scaffold787 WUBlastX DNA_hAT-Blackja 233858 234856 365 - . . scaffold787 GLEAN mRNA 242077 242286 0.970021 - . ID=CGI_10011650; scaffold787 WUBlastX LINE_RTE-X 242077 242286 66 + . . scaffold787 GLEAN mRNA 260763 260787 0.515908 + . ID=CGI_10011651; scaffold787 TRF Tandem_Repeat 260763 260787 50 + . . scaffold787 GLEAN mRNA 261763 261796 0.515908 + . ID=CGI_10011651; scaffold787 TRF Tandem_Repeat 261763 261796 68 + . . scaffold787 GLEAN mRNA 264667 264714 0.515908 + . ID=CGI_10011651; scaffold787 TRF Tandem_Repeat 264667 264714 96 + . . scaffold787 GLEAN mRNA 264714 264755 0.515908 + . ID=CGI_10011651; scaffold787 TRF Tandem_Repeat 264714 264755 84 + . . scaffold787 GLEAN mRNA 272200 272313 0.515908 + . ID=CGI_10011651; scaffold787 TRF Tandem_Repeat 272200 272313 102 + . . scaffold787 GLEAN mRNA 288573 289724 1 - . ID=CGI_10011652; scaffold787 TRF Tandem_Repeat 288573 289724 1179 + . . scaffold1743 GLEAN mRNA 50057 50242 0.501263 + . ID=CGI_10011653; scaffold1743 WUBlastX LINE_RTE-X 50057 50242 66 + . . scaffold1743 GLEAN mRNA 49985 50233 0.501263 + . ID=CGI_10011653; scaffold1743 WUBlastX LINE_RTE-X 49985 50233 59 + . . scaffold1743 GLEAN mRNA 151600 151998 0.926405 - . ID=CGI_10011655; scaffold1743 WUBlastX LTR_Ngaro 151600 151998 110 - . . scaffold1743 GLEAN mRNA 200538 201311 0.808811 - . ID=CGI_10011656; scaffold1743 TRF Tandem_Repeat 200538 201311 950 + . . scaffold1743 GLEAN mRNA 208712 208873 0.614112 + . ID=CGI_10011657; scaffold1743 WUBlastX DNA_hAT-hAT5 208712 208873 64 + . . scaffold1743 GLEAN mRNA 208709 208915 0.614112 + . ID=CGI_10011657; scaffold1743 WUBlastX DNA_hAT-hAT5 208709 208915 34 + . . scaffold1743 GLEAN mRNA 209268 209414 0.614112 + . ID=CGI_10011657; scaffold1743 WUBlastX DNA_hAT-hAT5 209268 209414 43 + . . scaffold1743 GLEAN mRNA 207142 207870 0.614112 + . ID=CGI_10011657; scaffold1743 WUBlastX DNA_hAT-Blackja 207142 207870 133 + . . scaffold1743 GLEAN mRNA 207043 208080 0.614112 + . ID=CGI_10011657; scaffold1743 WUBlastX DNA_hAT-Charlie 207043 208080 28 + . . scaffold1743 GLEAN mRNA 233965 234378 0.742801 - . ID=CGI_10011658; scaffold1743 WUBlastX LINE_RTE-X 233965 234378 49 - . . scaffold1743 GLEAN mRNA 233893 234198 0.742801 - . ID=CGI_10011658; scaffold1743 WUBlastX LINE_RTE-X 233893 234198 23 - . . scaffold1743 GLEAN mRNA 233986 234471 0.742801 - . ID=CGI_10011658; scaffold1743 WUBlastX LINE_RTE-X 233986 234471 41 - . . scaffold43660 GLEAN mRNA 37089 37388 0.969554 - . ID=CGI_10011660; scaffold43660 TRF Tandem_Repeat 37089 37388 194 + . . scaffold43660 GLEAN mRNA 37143 37388 0.969554 - . ID=CGI_10011660; scaffold43660 TRF Tandem_Repeat 37143 37388 206 + . . scaffold43660 GLEAN mRNA 37089 37388 0.969554 - . ID=CGI_10011660; scaffold43660 TRF Tandem_Repeat 37089 37388 503 + . . scaffold43660 GLEAN mRNA 47105 47539 0.969554 - . ID=CGI_10011660; scaffold43660 WUBlastX LINE_Penelope 47105 47539 58 - . . scaffold43660 GLEAN mRNA 47015 47491 0.969554 - . ID=CGI_10011660; scaffold43660 WUBlastX LINE_Penelope 47015 47491 56 - . . scaffold43660 GLEAN mRNA 53340 53439 0.969554 - . ID=CGI_10011660; scaffold43660 TRF Tandem_Repeat 53340 53439 94 + . . scaffold43660 GLEAN mRNA 54067 54433 0.969554 - . ID=CGI_10011660; scaffold43660 TRF Tandem_Repeat 54067 54433 321 + . . scaffold43660 GLEAN mRNA 84193 84217 0.650662 - . ID=CGI_10011661; scaffold43660 TRF Tandem_Repeat 84193 84217 50 + . . scaffold43660 GLEAN mRNA 84616 84666 0.650662 - . ID=CGI_10011661; scaffold43660 TRF Tandem_Repeat 84616 84666 68 + . . scaffold43660 GLEAN mRNA 85320 85366 0.650662 - . ID=CGI_10011661; scaffold43660 TRF Tandem_Repeat 85320 85366 94 + . . scaffold43660 GLEAN mRNA 91755 91780 0.650662 - . ID=CGI_10011661; scaffold43660 TRF Tandem_Repeat 91755 91780 52 + . . scaffold43660 GLEAN mRNA 82247 82441 0.650662 - . ID=CGI_10011661; scaffold43660 WUBlastX DNA_Kolobok-IS4 82247 82441 67 + . . scaffold43660 GLEAN mRNA 82470 82760 0.650662 - . ID=CGI_10011661; scaffold43660 WUBlastX DNA_IS4EU 82470 82760 143 + . . scaffold43660 GLEAN mRNA 93326 93706 0.650662 - . ID=CGI_10011661; scaffold43660 WUBlastX DNA_Harbinger 93326 93706 30 + . . scaffold43660 GLEAN mRNA 93442 93706 0.96423 + . ID=CGI_10011662; scaffold43660 WUBlastX DNA_Harbinger 93326 93706 30 + . . scaffold43660 GLEAN mRNA 127145 127231 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 127145 127231 22 - . . scaffold43660 GLEAN mRNA 127434 127820 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 127434 127820 55 - . . scaffold43660 GLEAN mRNA 127639 127881 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 127639 127881 20 - . . scaffold43660 GLEAN mRNA 128223 128357 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 128223 128357 34 - . . scaffold43660 GLEAN mRNA 128223 128390 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 128223 128390 29 - . . scaffold43660 GLEAN mRNA 127380 127655 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 127380 127655 51 - . . scaffold43660 GLEAN mRNA 127955 128191 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 127955 128191 33 - . . scaffold43660 GLEAN mRNA 126824 127081 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 126824 127081 34 - . . scaffold43660 GLEAN mRNA 127440 127637 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 127440 127637 64 - . . scaffold43660 GLEAN mRNA 128021 128191 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 128021 128191 38 - . . scaffold43660 GLEAN mRNA 132517 132657 0.998274 + . ID=CGI_10011663; scaffold43660 TRF Tandem_Repeat 132517 132657 196 + . . scaffold43660 GLEAN mRNA 134787 135029 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_L2 134787 135029 87 + . . scaffold43660 GLEAN mRNA 164156 164201 0.999991 - . ID=CGI_10011666; scaffold43660 TRF Tandem_Repeat 164156 164201 67 + . . scaffold43660 GLEAN mRNA 164153 164206 0.999991 - . ID=CGI_10011666; scaffold43660 TRF Tandem_Repeat 164153 164206 67 + . . scaffold43660 GLEAN mRNA 170164 170556 0.999991 - . ID=CGI_10011666; scaffold43660 WUBlastX LINE_L1-Tx1 170164 170556 31 - . . scaffold43660 GLEAN mRNA 184141 184182 0.999991 - . ID=CGI_10011666; scaffold43660 TRF Tandem_Repeat 184141 184182 84 + . . scaffold43660 GLEAN mRNA 182374 182454 0.999991 - . ID=CGI_10011666; scaffold43660 WUBlastX DNA_hAT-Blackja 182374 182454 37 - . . scaffold43660 GLEAN mRNA 201391 201415 0.999676 - . ID=CGI_10011668; scaffold43660 TRF Tandem_Repeat 201391 201415 50 + . . scaffold43660 GLEAN mRNA 227276 227392 1 - . ID=CGI_10011669; scaffold43660 WUBlastX LINE_Penelope 227276 227392 46 + . . scaffold43660 GLEAN mRNA 229491 229582 1 - . ID=CGI_10011669; scaffold43660 TRF Tandem_Repeat 229491 229582 123 + . . scaffold43660 GLEAN mRNA 229662 229819 1 - . ID=CGI_10011669; scaffold43660 TRF Tandem_Repeat 229662 229819 160 + . . scaffold43660 GLEAN mRNA 229871 229997 1 - . ID=CGI_10011669; scaffold43660 TRF Tandem_Repeat 229871 229997 146 + . . scaffold43660 GLEAN mRNA 230091 230185 1 - . ID=CGI_10011669; scaffold43660 TRF Tandem_Repeat 230091 230185 104 + . . scaffold43660 GLEAN mRNA 242318 242377 0.998753 - . ID=CGI_10011670; scaffold43660 TRF Tandem_Repeat 242318 242377 106 + . . scaffold43660 GLEAN mRNA 244225 244832 0.99966 - . ID=CGI_10011671; scaffold43660 TRF Tandem_Repeat 244225 244832 1157 + . . scaffold43660 GLEAN mRNA 254056 254104 0.99966 - . ID=CGI_10011671; scaffold43660 TRF Tandem_Repeat 254056 254104 98 + . . scaffold43660 GLEAN mRNA 245924 246067 0.99966 - . ID=CGI_10011671; scaffold43660 WUBlastX LTR_Ngaro 245924 246067 109 + . . scaffold43660 GLEAN mRNA 245036 245893 0.99966 - . ID=CGI_10011671; scaffold43660 WUBlastX LTR_Ngaro 245036 245893 175 + . . scaffold43660 GLEAN mRNA 264161 264204 0.998201 - . ID=CGI_10011673; scaffold43660 TRF Tandem_Repeat 264161 264204 88 + . . scaffold43660 GLEAN mRNA 265894 266855 0.998201 - . ID=CGI_10011673; scaffold43660 TRF Tandem_Repeat 265894 266855 1053 + . . scaffold43660 GLEAN mRNA 270661 271050 0.998201 - . ID=CGI_10011673; scaffold43660 WUBlastX DNA_TcMar-Fot1 270661 271050 91 + . . scaffold43660 GLEAN mRNA 270568 270978 0.998201 - . ID=CGI_10011673; scaffold43660 WUBlastX DNA_TcMar-Fot1 270568 270978 97 + . . scaffold43660 GLEAN mRNA 271367 271429 0.998201 - . ID=CGI_10011673; scaffold43660 WUBlastX DNA_TcMar-Fot1 271367 271429 23 + . . scaffold43660 GLEAN mRNA 286255 286329 0.673923 + . ID=CGI_10011674; scaffold43660 TRF Tandem_Repeat 286255 286329 150 + . . scaffold783 GLEAN mRNA 3328 3510 0.358594 + . ID=CGI_10011675; scaffold783 TRF Tandem_Repeat 3328 3510 188 + . . scaffold783 GLEAN mRNA 5876 5974 0.358594 + . ID=CGI_10011675; scaffold783 TRF Tandem_Repeat 5876 5974 117 + . . scaffold783 GLEAN mRNA 5875 5969 0.358594 + . ID=CGI_10011675; scaffold783 TRF Tandem_Repeat 5875 5969 100 + . . scaffold783 GLEAN mRNA 7169 7468 0.358594 + . ID=CGI_10011675; scaffold783 WUBlastX LINE_RTE-X 7169 7468 112 - . . scaffold783 GLEAN mRNA 7193 7525 0.358594 + . ID=CGI_10011675; scaffold783 WUBlastX LINE_RTE-X 7193 7525 94 - . . scaffold783 GLEAN mRNA 18811 18925 0.358594 + . ID=CGI_10011675; scaffold783 TRF Tandem_Repeat 18811 18925 83 + . . scaffold783 GLEAN mRNA 27276 27355 0.358594 + . ID=CGI_10011675; scaffold783 TRF Tandem_Repeat 27276 27355 153 + . . scaffold783 GLEAN mRNA 38979 39059 0.838692 + . ID=CGI_10011676; scaffold783 TRF Tandem_Repeat 38979 39059 117 + . . scaffold783 GLEAN mRNA 45665 45831 0.838692 + . ID=CGI_10011676; scaffold783 TRF Tandem_Repeat 45665 45831 257 + . . scaffold783 GLEAN mRNA 136101 136343 0.99762 + . ID=CGI_10011677; scaffold783 WUBlastX LINE_RTE-X 136101 136343 74 - . . scaffold783 GLEAN mRNA 136101 136271 0.99762 + . ID=CGI_10011677; scaffold783 WUBlastX LINE_RTE-X 136101 136271 89 - . . scaffold783 GLEAN mRNA 135984 136460 0.99762 + . ID=CGI_10011677; scaffold783 WUBlastX LINE_RTE-X 135984 136460 73 - . . scaffold783 GLEAN mRNA 145160 145202 0.993546 + . ID=CGI_10011678; scaffold783 TRF Tandem_Repeat 145160 145202 50 + . . scaffold783 GLEAN mRNA 145160 145192 0.993546 + . ID=CGI_10011678; scaffold783 TRF Tandem_Repeat 145160 145192 52 + . . scaffold783 GLEAN mRNA 145319 145369 0.993546 + . ID=CGI_10011678; scaffold783 TRF Tandem_Repeat 145319 145369 59 + . . scaffold783 GLEAN mRNA 145318 145369 0.993546 + . ID=CGI_10011678; scaffold783 TRF Tandem_Repeat 145318 145369 63 + . . scaffold783 GLEAN mRNA 145470 145520 0.993546 + . ID=CGI_10011678; scaffold783 TRF Tandem_Repeat 145470 145520 68 + . . scaffold783 GLEAN mRNA 145469 145520 0.993546 + . ID=CGI_10011678; scaffold783 TRF Tandem_Repeat 145469 145520 72 + . . scaffold783 GLEAN mRNA 224025 224051 0.999719 + . ID=CGI_10011683; scaffold783 TRF Tandem_Repeat 224025 224051 54 + . . scaffold783 GLEAN mRNA 231132 231185 0.999787 - . ID=CGI_10011684; scaffold783 TRF Tandem_Repeat 231132 231185 108 + . . scaffold783 GLEAN mRNA 271561 271597 0.999949 + . ID=CGI_10011687; scaffold783 TRF Tandem_Repeat 271561 271597 58 + . . scaffold783 GLEAN mRNA 275745 275782 0.999949 + . ID=CGI_10011687; scaffold783 TRF Tandem_Repeat 275745 275782 76 + . . scaffold783 GLEAN mRNA 275953 275990 0.999949 + . ID=CGI_10011687; scaffold783 TRF Tandem_Repeat 275953 275990 51 + . . scaffold783 GLEAN mRNA 276011 276046 0.999949 + . ID=CGI_10011687; scaffold783 TRF Tandem_Repeat 276011 276046 63 + . . scaffold783 GLEAN mRNA 274069 274434 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LTR_Pao 274069 274434 27 - . . scaffold783 GLEAN mRNA 271733 273583 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LTR_Pao 271733 273583 363 - . . scaffold783 GLEAN mRNA 273407 273670 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LTR_Pao 273407 273670 41 - . . scaffold783 GLEAN mRNA 271733 273238 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LTR_Pao 271733 273238 892 - . . scaffold783 GLEAN mRNA 273374 273628 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LTR_Pao 273374 273628 84 - . . scaffold783 GLEAN mRNA 273706 274350 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LTR_Pao 273706 274350 479 - . . scaffold783 GLEAN mRNA 274749 274979 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LTR_Pao 274749 274979 35 - . . scaffold783 GLEAN mRNA 274460 274663 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LTR_Pao 274460 274663 24 - . . scaffold783 GLEAN mRNA 280054 281102 0.999949 + . ID=CGI_10011687; scaffold783 TRF Tandem_Repeat 280054 281102 723 + . . scaffold783 GLEAN mRNA 287650 287752 0.999949 + . ID=CGI_10011687; scaffold783 TRF Tandem_Repeat 287650 287752 181 + . . scaffold783 GLEAN mRNA 287514 287648 0.999949 + . ID=CGI_10011687; scaffold783 WUBlastX LINE_L1-Tx1 287514 287648 21 + . . scaffold296 GLEAN mRNA 16983 17947 0.74313 + . ID=CGI_10011689; scaffold296 TRF Tandem_Repeat 16983 17947 1375 + . . scaffold296 GLEAN mRNA 45132 45330 0.928323 - . ID=CGI_10011690; scaffold296 TRF Tandem_Repeat 45132 45330 265 + . . scaffold296 GLEAN mRNA 56734 56901 0.928323 - . ID=CGI_10011690; scaffold296 WUBlastX DNA_hAT-Ac 56734 56901 89 - . . scaffold296 GLEAN mRNA 56909 57283 0.928323 - . ID=CGI_10011690; scaffold296 WUBlastX DNA_hAT-Ac 56909 57283 48 - . . scaffold296 GLEAN mRNA 91024 91270 0.999008 + . ID=CGI_10011693; scaffold296 TRF Tandem_Repeat 91024 91270 234 + . . scaffold296 GLEAN mRNA 92786 92832 0.999008 + . ID=CGI_10011693; scaffold296 TRF Tandem_Repeat 92786 92832 94 + . . scaffold296 GLEAN mRNA 96598 96663 0.999008 + . ID=CGI_10011693; scaffold296 TRF Tandem_Repeat 96598 96663 87 + . . scaffold296 GLEAN mRNA 99945 99979 0.999008 + . ID=CGI_10011693; scaffold296 TRF Tandem_Repeat 99945 99979 70 + . . scaffold296 GLEAN mRNA 100716 100775 0.999008 + . ID=CGI_10011693; scaffold296 TRF Tandem_Repeat 100716 100775 84 + . . scaffold296 GLEAN mRNA 100716 100775 0.999008 + . ID=CGI_10011693; scaffold296 TRF Tandem_Repeat 100716 100775 102 + . . scaffold296 GLEAN mRNA 101016 101055 0.999008 + . ID=CGI_10011693; scaffold296 TRF Tandem_Repeat 101016 101055 80 + . . scaffold296 GLEAN mRNA 245057 245473 0.999949 - . ID=CGI_10011701; scaffold296 WUBlastX LINE_L2 245057 245473 264 + . . scaffold296 GLEAN mRNA 238422 240209 0.999949 - . ID=CGI_10011701; scaffold296 WUBlastX LINE_RTE-X 238422 240209 495 - . . scaffold296 GLEAN mRNA 265272 265310 0.283485 - . ID=CGI_10011702; scaffold296 TRF Tandem_Repeat 265272 265310 60 + . . scaffold296 GLEAN mRNA 282029 282067 0.283485 - . ID=CGI_10011702; scaffold296 TRF Tandem_Repeat 282029 282067 78 + . . scaffold43664 GLEAN mRNA 68383 68450 1 - . ID=CGI_10011707; scaffold43664 TRF Tandem_Repeat 68383 68450 75 + . . scaffold43664 GLEAN mRNA 68385 68450 1 - . ID=CGI_10011707; scaffold43664 TRF Tandem_Repeat 68385 68450 87 + . . scaffold43664 GLEAN mRNA 115392 115573 1 + . ID=CGI_10011710; scaffold43664 TRF Tandem_Repeat 115392 115573 247 + . . scaffold43664 GLEAN mRNA 116667 116705 1 + . ID=CGI_10011710; scaffold43664 TRF Tandem_Repeat 116667 116705 78 + . . scaffold43664 GLEAN mRNA 117083 117129 1 + . ID=CGI_10011710; scaffold43664 TRF Tandem_Repeat 117083 117129 60 + . . scaffold43664 GLEAN mRNA 120202 120249 1 + . ID=CGI_10011710; scaffold43664 TRF Tandem_Repeat 120202 120249 96 + . . scaffold43664 GLEAN mRNA 130580 130664 0.744516 + . ID=CGI_10011711; scaffold43664 TRF Tandem_Repeat 130580 130664 170 + . . scaffold43664 GLEAN mRNA 149741 149952 0.999903 - . ID=CGI_10011712; scaffold43664 TRF Tandem_Repeat 149741 149952 131 + . . scaffold43664 GLEAN mRNA 149825 150030 0.999903 - . ID=CGI_10011712; scaffold43664 TRF Tandem_Repeat 149825 150030 138 + . . scaffold43664 GLEAN mRNA 151480 151506 0.999903 - . ID=CGI_10011712; scaffold43664 TRF Tandem_Repeat 151480 151506 54 + . . scaffold43664 GLEAN mRNA 165889 166312 0.941403 + . ID=CGI_10011713; scaffold43664 TRF Tandem_Repeat 165889 166312 598 + . . scaffold43664 GLEAN mRNA 172619 172945 0.941403 + . ID=CGI_10011713; scaffold43664 TRF Tandem_Repeat 172619 172945 385 + . . scaffold43664 GLEAN mRNA 181309 181553 0.941403 + . ID=CGI_10011713; scaffold43664 TRF Tandem_Repeat 181309 181553 358 + . . scaffold43664 GLEAN mRNA 213981 214649 0.656307 - . ID=CGI_10011717; scaffold43664 WUBlastX LINE_RTE-X 213981 214649 136 + . . scaffold43664 GLEAN mRNA 213794 213946 0.656307 - . ID=CGI_10011717; scaffold43664 WUBlastX LINE_RTE-X 213794 213946 66 + . . scaffold43664 GLEAN mRNA 213728 213916 0.656307 - . ID=CGI_10011717; scaffold43664 WUBlastX LINE_L1-Tx1 213728 213916 36 + . . scaffold43664 GLEAN mRNA 214197 214661 0.656307 - . ID=CGI_10011717; scaffold43664 WUBlastX LINE_RTE-X 214197 214661 177 + . . scaffold43664 GLEAN mRNA 214179 214898 0.656307 - . ID=CGI_10011717; scaffold43664 WUBlastX LINE_RTE-X 214179 214898 97 + . . scaffold43664 GLEAN mRNA 213931 214167 0.656307 - . ID=CGI_10011717; scaffold43664 WUBlastX LINE_RTE-X 213931 214167 71 + . . scaffold43664 GLEAN mRNA 255746 255897 0.494472 + . ID=CGI_10011721; scaffold43664 TRF Tandem_Repeat 255746 255897 106 + . . scaffold43664 GLEAN mRNA 255741 255897 0.494472 + . ID=CGI_10011721; scaffold43664 TRF Tandem_Repeat 255741 255897 269 + . . scaffold43664 GLEAN mRNA 272014 272344 0.613353 - . ID=CGI_10011723; scaffold43664 TRF Tandem_Repeat 272014 272344 334 + . . scaffold43664 GLEAN mRNA 272056 272344 0.613353 - . ID=CGI_10011723; scaffold43664 TRF Tandem_Repeat 272056 272344 260 + . . scaffold43664 GLEAN mRNA 284471 284511 0.613353 - . ID=CGI_10011723; scaffold43664 TRF Tandem_Repeat 284471 284511 82 + . . scaffold43664 GLEAN mRNA 290008 290081 0.831074 + . ID=CGI_10011724; scaffold43664 TRF Tandem_Repeat 290008 290081 103 + . . scaffold43676 GLEAN mRNA 63327 63359 0.553897 - . ID=CGI_10011729; scaffold43676 TRF Tandem_Repeat 63327 63359 66 + . . scaffold43676 GLEAN mRNA 73259 73363 0.553897 - . ID=CGI_10011729; scaffold43676 WUBlastX LINE_RTE-X 73259 73363 29 + . . scaffold43676 GLEAN mRNA 73375 73485 0.553897 - . ID=CGI_10011729; scaffold43676 WUBlastX LINE_RTE-X 73375 73485 46 + . . scaffold43676 GLEAN mRNA 105295 105360 0.726504 + . ID=CGI_10011731; scaffold43676 TRF Tandem_Repeat 105295 105360 123 + . . scaffold43676 GLEAN mRNA 106106 106785 0.726504 + . ID=CGI_10011731; scaffold43676 TRF Tandem_Repeat 106106 106785 606 + . . scaffold43676 GLEAN mRNA 106106 106785 0.726504 + . ID=CGI_10011731; scaffold43676 TRF Tandem_Repeat 106106 106785 550 + . . scaffold43676 GLEAN mRNA 106106 106785 0.726504 + . ID=CGI_10011731; scaffold43676 TRF Tandem_Repeat 106106 106785 638 + . . scaffold43676 GLEAN mRNA 112651 112703 0.726504 + . ID=CGI_10011731; scaffold43676 TRF Tandem_Repeat 112651 112703 106 + . . scaffold43676 GLEAN mRNA 127709 127756 0.726504 + . ID=CGI_10011731; scaffold43676 TRF Tandem_Repeat 127709 127756 96 + . . scaffold43676 GLEAN mRNA 139013 139075 0.726504 + . ID=CGI_10011731; scaffold43676 TRF Tandem_Repeat 139013 139075 63 + . . scaffold43676 GLEAN mRNA 141593 142655 0.726504 + . ID=CGI_10011731; scaffold43676 TRF Tandem_Repeat 141593 142655 1507 + . . scaffold43676 GLEAN mRNA 146683 146726 0.726504 + . ID=CGI_10011731; scaffold43676 TRF Tandem_Repeat 146683 146726 70 + . . scaffold43676 GLEAN mRNA 149480 150622 0.726504 + . ID=CGI_10011731; scaffold43676 TRF Tandem_Repeat 149480 150622 1594 + . . scaffold43676 GLEAN mRNA 146753 148144 0.726504 + . ID=CGI_10011731; scaffold43676 TRF Tandem_Repeat 146753 148144 1996 + . . scaffold43676 GLEAN mRNA 211597 211839 0.756935 + . ID=CGI_10011734; scaffold43676 WUBlastX RC_Helitron 211303 211839 32 + . . scaffold43676 GLEAN mRNA 215547 216148 0.756935 + . ID=CGI_10011734; scaffold43676 TRF Tandem_Repeat 215547 216148 794 + . . scaffold43676 GLEAN mRNA 214766 215275 0.756935 + . ID=CGI_10011734; scaffold43676 WUBlastX LINE_RTE-X 214766 215275 73 + . . scaffold43676 GLEAN mRNA 214646 214963 0.756935 + . ID=CGI_10011734; scaffold43676 WUBlastX LINE_L2 214646 214963 68 + . . scaffold43676 GLEAN mRNA 285545 285664 0.887804 - . ID=CGI_10011740; scaffold43676 TRF Tandem_Repeat 285545 285664 213 + . . scaffold43680 GLEAN mRNA 14224 14312 0.476017 + . ID=CGI_10011741; scaffold43680 TRF Tandem_Repeat 14224 14312 115 + . . scaffold43680 GLEAN mRNA 35308 35522 0.733639 - . ID=CGI_10011742; scaffold43680 TRF Tandem_Repeat 35308 35522 403 + . . scaffold43680 GLEAN mRNA 56968 57674 1 + . ID=CGI_10011743; scaffold43680 TRF Tandem_Repeat 56968 57674 1054 + . . scaffold43680 GLEAN mRNA 85777 86310 1 - . ID=CGI_10011745; scaffold43680 TRF Tandem_Repeat 85777 86310 487 + . . scaffold43680 GLEAN mRNA 86005 86310 1 - . ID=CGI_10011745; scaffold43680 TRF Tandem_Repeat 86005 86310 393 + . . scaffold43680 GLEAN mRNA 85722 86306 1 - . ID=CGI_10011745; scaffold43680 TRF Tandem_Repeat 85722 86306 389 + . . scaffold43680 GLEAN mRNA 194317 194596 0.998595 - . ID=CGI_10011748; scaffold43680 TRF Tandem_Repeat 194317 194596 452 + . . scaffold43680 GLEAN mRNA 239381 239682 0.691038 - . ID=CGI_10011750; scaffold43680 TRF Tandem_Repeat 239381 239682 203 + . . scaffold43680 GLEAN mRNA 239381 239730 0.691038 - . ID=CGI_10011750; scaffold43680 TRF Tandem_Repeat 239381 239730 226 + . . scaffold43680 GLEAN mRNA 239192 239730 0.691038 - . ID=CGI_10011750; scaffold43680 TRF Tandem_Repeat 239192 239730 537 + . . scaffold43680 GLEAN mRNA 239339 239676 0.691038 - . ID=CGI_10011750; scaffold43680 TRF Tandem_Repeat 239339 239676 233 + . . scaffold43680 GLEAN mRNA 240713 240765 0.691038 - . ID=CGI_10011750; scaffold43680 TRF Tandem_Repeat 240713 240765 99 + . . scaffold43680 GLEAN mRNA 249225 249250 0.691038 - . ID=CGI_10011750; scaffold43680 TRF Tandem_Repeat 249225 249250 52 + . . scaffold43680 GLEAN mRNA 264694 264729 0.999295 + . ID=CGI_10011752; scaffold43680 TRF Tandem_Repeat 264694 264729 58 + . . scaffold43680 GLEAN mRNA 268269 268331 0.999295 + . ID=CGI_10011752; scaffold43680 TRF Tandem_Repeat 268269 268331 126 + . . scaffold43680 GLEAN mRNA 268434 268466 0.999295 + . ID=CGI_10011752; scaffold43680 TRF Tandem_Repeat 268434 268466 57 + . . scaffold43680 GLEAN mRNA 276110 276163 0.999295 + . ID=CGI_10011752; scaffold43680 TRF Tandem_Repeat 276110 276163 63 + . . scaffold43680 GLEAN mRNA 276116 276163 0.999295 + . ID=CGI_10011752; scaffold43680 TRF Tandem_Repeat 276116 276163 69 + . . scaffold43680 GLEAN mRNA 280531 281477 0.999295 + . ID=CGI_10011752; scaffold43680 TRF Tandem_Repeat 280531 281477 1314 + . . scaffold43686 GLEAN mRNA 15381 15428 0.498897 + . ID=CGI_10011753; scaffold43686 WUBlastX LINE_L1 15381 15428 21 - . . scaffold43686 GLEAN mRNA 27305 27348 0.498897 + . ID=CGI_10011753; scaffold43686 TRF Tandem_Repeat 27305 27348 70 + . . scaffold43686 GLEAN mRNA 27379 28172 0.498897 + . ID=CGI_10011753; scaffold43686 TRF Tandem_Repeat 27379 28172 1189 + . . scaffold43686 GLEAN mRNA 29889 30304 0.498897 + . ID=CGI_10011753; scaffold43686 TRF Tandem_Repeat 29889 30304 354 + . . scaffold43686 GLEAN mRNA 29868 29989 0.498897 + . ID=CGI_10011753; scaffold43686 TRF Tandem_Repeat 29868 29989 64 + . . scaffold43686 GLEAN mRNA 29957 30304 0.498897 + . ID=CGI_10011753; scaffold43686 TRF Tandem_Repeat 29957 30304 444 + . . scaffold43686 GLEAN mRNA 29958 30304 0.498897 + . ID=CGI_10011753; scaffold43686 TRF Tandem_Repeat 29958 30304 543 + . . scaffold43686 GLEAN mRNA 24193 24480 0.498897 + . ID=CGI_10011753; scaffold43686 WUBlastX LINE_L1 24193 24480 119 - . . scaffold43686 GLEAN mRNA 17581 17952 0.498897 + . ID=CGI_10011753; scaffold43686 WUBlastX LINE_CR1 17581 17952 56 - . . scaffold43686 GLEAN mRNA 16854 17657 0.498897 + . ID=CGI_10011753; scaffold43686 WUBlastX LINE_CR1 16854 17657 372 - . . scaffold43686 GLEAN mRNA 17581 17829 0.498897 + . ID=CGI_10011753; scaffold43686 WUBlastX LINE_CR1 17581 17829 121 - . . scaffold43686 GLEAN mRNA 16492 16926 0.498897 + . ID=CGI_10011753; scaffold43686 WUBlastX LINE_CR1 16492 16926 437 - . . scaffold43686 GLEAN mRNA 17593 17871 0.498897 + . ID=CGI_10011753; scaffold43686 WUBlastX LINE_CR1-L2 17593 17871 60 - . . scaffold43686 GLEAN mRNA 15536 16489 0.498897 + . ID=CGI_10011753; scaffold43686 WUBlastX LINE_CR1 15536 16489 742 - . . scaffold43686 GLEAN mRNA 60272 60304 0.584771 - . ID=CGI_10011755; scaffold43686 TRF Tandem_Repeat 60272 60304 50 + . . scaffold43686 GLEAN mRNA 60304 60362 0.584771 - . ID=CGI_10011755; scaffold43686 TRF Tandem_Repeat 60304 60362 118 + . . scaffold43686 GLEAN mRNA 63755 63796 0.584771 - . ID=CGI_10011755; scaffold43686 TRF Tandem_Repeat 63755 63796 66 + . . scaffold43686 GLEAN mRNA 174847 175296 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX LINE_L2 174847 175296 21 - . . scaffold43686 GLEAN mRNA 175018 175206 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX LINE_L2 175018 175206 70 - . . scaffold43686 GLEAN mRNA 187073 187330 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX LTR_Gypsy 187073 187330 117 - . . scaffold43686 GLEAN mRNA 187639 188532 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX LTR_Gypsy 187639 188532 22 - . . scaffold43686 GLEAN mRNA 188392 188532 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX LTR_Gypsy 188392 188532 54 - . . scaffold43686 GLEAN mRNA 188362 188532 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX LTR_Gypsy 188362 188532 31 - . . scaffold43686 GLEAN mRNA 187639 188076 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX LTR_Gypsy 187639 188076 108 - . . scaffold43686 GLEAN mRNA 187636 187923 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX LTR_Gypsy 187636 187923 118 - . . scaffold43686 GLEAN mRNA 183554 183778 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX DNA_Zator 183554 183778 39 - . . scaffold43686 GLEAN mRNA 183928 184116 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX DNA_Zator 183928 184116 90 - . . scaffold43686 GLEAN mRNA 184098 185006 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX DNA_Zator 184098 185006 290 - . . scaffold43686 GLEAN mRNA 185236 185982 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX DNA_Zator 185236 185982 126 - . . scaffold43686 GLEAN mRNA 187115 187630 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX LTR_Gypsy 187115 187630 206 - . . scaffold43686 GLEAN mRNA 185000 185242 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX DNA_Zator 185000 185242 83 - . . scaffold43686 GLEAN mRNA 188594 188674 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX LTR_Gypsy 188594 188674 21 - . . scaffold43686 GLEAN mRNA 236505 236573 0.810912 - . ID=CGI_10011759; scaffold43686 TRF Tandem_Repeat 236505 236573 102 + . . scaffold43686 GLEAN mRNA 258901 258946 0.445462 - . ID=CGI_10011760; scaffold43686 TRF Tandem_Repeat 258901 258946 92 + . . scaffold43686 GLEAN mRNA 259050 259094 0.445462 - . ID=CGI_10011760; scaffold43686 TRF Tandem_Repeat 259050 259094 90 + . . scaffold1597 GLEAN mRNA 2304 3287 1 - . ID=CGI_10011762; scaffold1597 WUBlastX DNA_hAT-Tip100 2304 3287 147 - . . scaffold1597 GLEAN mRNA 3153 3533 1 - . ID=CGI_10011762; scaffold1597 WUBlastX DNA_hAT-Tip100 3153 3533 23 - . . scaffold1597 GLEAN mRNA 3111 3440 1 - . ID=CGI_10011762; scaffold1597 WUBlastX DNA_hAT-Tip100 3111 3440 151 - . . scaffold1597 GLEAN mRNA 24208 24254 0.650922 - . ID=CGI_10011763; scaffold1597 TRF Tandem_Repeat 24208 24254 58 + . . scaffold1597 GLEAN mRNA 24208 24254 0.999419 + . ID=CGI_10011764; scaffold1597 TRF Tandem_Repeat 24208 24254 58 + . . scaffold1597 GLEAN mRNA 34557 34739 1 - . ID=CGI_10011765; scaffold1597 TRF Tandem_Repeat 34557 34739 303 + . . scaffold1597 GLEAN mRNA 37687 37786 1 - . ID=CGI_10011766; scaffold1597 TRF Tandem_Repeat 37687 37786 96 + . . scaffold1597 GLEAN mRNA 74552 74588 0.999715 - . ID=CGI_10011769; scaffold1597 TRF Tandem_Repeat 74552 74588 56 + . . scaffold1597 GLEAN mRNA 77331 77550 0.999715 - . ID=CGI_10011769; scaffold1597 TRF Tandem_Repeat 77331 77550 305 + . . scaffold1597 GLEAN mRNA 81124 81167 0.999715 - . ID=CGI_10011769; scaffold1597 TRF Tandem_Repeat 81124 81167 81 + . . scaffold1597 GLEAN mRNA 72327 72794 0.999715 - . ID=CGI_10011769; scaffold1597 WUBlastX LINE_RTE-X 72327 72794 112 + . . scaffold1597 GLEAN mRNA 87586 87627 0.811719 + . ID=CGI_10011770; scaffold1597 TRF Tandem_Repeat 87586 87627 75 + . . scaffold1597 GLEAN mRNA 93411 94032 0.811719 + . ID=CGI_10011770; scaffold1597 TRF Tandem_Repeat 93411 94032 632 + . . scaffold1597 GLEAN mRNA 93684 93724 0.811719 + . ID=CGI_10011770; scaffold1597 TRF Tandem_Repeat 93684 93724 66 + . . scaffold1597 GLEAN mRNA 105410 106332 0.890291 - . ID=CGI_10011771; scaffold1597 TRF Tandem_Repeat 105410 106332 1393 + . . scaffold1597 GLEAN mRNA 106663 106810 0.890291 - . ID=CGI_10011771; scaffold1597 TRF Tandem_Repeat 106663 106810 80 + . . scaffold1597 GLEAN mRNA 250279 250319 0.994676 + . ID=CGI_10011776; scaffold1597 TRF Tandem_Repeat 250279 250319 64 + . . scaffold1597 GLEAN mRNA 250802 250870 0.994676 + . ID=CGI_10011776; scaffold1597 TRF Tandem_Repeat 250802 250870 138 + . . scaffold1597 GLEAN mRNA 253133 253180 0.994676 + . ID=CGI_10011776; scaffold1597 TRF Tandem_Repeat 253133 253180 96 + . . scaffold1597 GLEAN mRNA 256156 256218 0.994676 + . ID=CGI_10011776; scaffold1597 TRF Tandem_Repeat 256156 256218 126 + . . scaffold1597 GLEAN mRNA 257238 257288 0.994676 + . ID=CGI_10011776; scaffold1597 TRF Tandem_Repeat 257238 257288 102 + . . scaffold1283 GLEAN mRNA 12588 12621 0.98947 + . ID=CGI_10011780; scaffold1283 TRF Tandem_Repeat 12588 12621 68 + . . scaffold1283 GLEAN mRNA 26197 27248 0.580414 - . ID=CGI_10011782; scaffold1283 TRF Tandem_Repeat 26197 27248 864 + . . scaffold1283 GLEAN mRNA 26238 27234 0.580414 - . ID=CGI_10011782; scaffold1283 TRF Tandem_Repeat 26238 27234 759 + . . scaffold1283 GLEAN mRNA 27743 28477 0.580414 - . ID=CGI_10011782; scaffold1283 TRF Tandem_Repeat 27743 28477 1326 + . . scaffold1283 GLEAN mRNA 33685 33794 1 + . ID=CGI_10011783; scaffold1283 TRF Tandem_Repeat 33685 33794 148 + . . scaffold1283 GLEAN mRNA 39210 39647 1 + . ID=CGI_10011783; scaffold1283 WUBlastX LINE_RTE-X 39210 39647 50 + . . scaffold1283 GLEAN mRNA 38151 38600 1 + . ID=CGI_10011783; scaffold1283 WUBlastX LINE_RTE-X 38151 38600 146 + . . scaffold1283 GLEAN mRNA 38235 38591 1 + . ID=CGI_10011783; scaffold1283 WUBlastX LINE_RTE-X 38235 38591 219 + . . scaffold1283 GLEAN mRNA 38596 39495 1 + . ID=CGI_10011783; scaffold1283 WUBlastX LINE_RTE-X 38596 39495 166 + . . scaffold1283 GLEAN mRNA 55884 57181 0.999936 - . ID=CGI_10011785; scaffold1283 TRF Tandem_Repeat 55884 57181 1596 + . . scaffold1283 GLEAN mRNA 57617 58494 0.999936 - . ID=CGI_10011785; scaffold1283 TRF Tandem_Repeat 57617 58494 882 + . . scaffold1283 GLEAN mRNA 57617 58494 0.999936 - . ID=CGI_10011785; scaffold1283 TRF Tandem_Repeat 57617 58494 915 + . . scaffold1283 GLEAN mRNA 60014 60163 0.999936 - . ID=CGI_10011785; scaffold1283 TRF Tandem_Repeat 60014 60163 149 + . . scaffold1283 GLEAN mRNA 60273 60459 0.999936 - . ID=CGI_10011785; scaffold1283 TRF Tandem_Repeat 60273 60459 239 + . . scaffold1283 GLEAN mRNA 51684 51863 0.999936 - . ID=CGI_10011785; scaffold1283 WUBlastX LINE_RTE-X 51684 51863 67 + . . scaffold1283 GLEAN mRNA 51645 51986 0.999936 - . ID=CGI_10011785; scaffold1283 WUBlastX LINE_RTE-X 51645 51986 52 + . . scaffold1283 GLEAN mRNA 65166 67128 1 - . ID=CGI_10011786; scaffold1283 TRF Tandem_Repeat 65166 67128 2657 + . . scaffold1283 GLEAN mRNA 65166 67128 1 - . ID=CGI_10011786; scaffold1283 TRF Tandem_Repeat 65166 67128 2675 + . . scaffold1283 GLEAN mRNA 163819 163890 0.981099 - . ID=CGI_10011792; scaffold1283 TRF Tandem_Repeat 163819 163890 56 + . . scaffold1283 GLEAN mRNA 215483 215597 0.3561 - . ID=CGI_10011794; scaffold1283 TRF Tandem_Repeat 215483 215597 58 + . . scaffold1283 GLEAN mRNA 215474 215765 0.3561 - . ID=CGI_10011794; scaffold1283 TRF Tandem_Repeat 215474 215765 404 + . . scaffold1283 GLEAN mRNA 215481 215828 0.3561 - . ID=CGI_10011794; scaffold1283 TRF Tandem_Repeat 215481 215828 239 + . . scaffold1283 GLEAN mRNA 215755 216658 0.3561 - . ID=CGI_10011794; scaffold1283 TRF Tandem_Repeat 215755 216658 992 + . . scaffold1283 GLEAN mRNA 219553 219859 0.3561 - . ID=CGI_10011794; scaffold1283 TRF Tandem_Repeat 219553 219859 176 + . . scaffold1283 GLEAN mRNA 219606 219920 0.3561 - . ID=CGI_10011794; scaffold1283 TRF Tandem_Repeat 219606 219920 434 + . . scaffold1283 GLEAN mRNA 222956 223130 0.3561 - . ID=CGI_10011794; scaffold1283 TRF Tandem_Repeat 222956 223130 341 + . . scaffold1283 GLEAN mRNA 226509 226554 0.3561 - . ID=CGI_10011794; scaffold1283 TRF Tandem_Repeat 226509 226554 67 + . . scaffold1283 GLEAN mRNA 226506 226559 0.3561 - . ID=CGI_10011794; scaffold1283 TRF Tandem_Repeat 226506 226559 67 + . . scaffold1283 GLEAN mRNA 226893 227101 0.3561 - . ID=CGI_10011794; scaffold1283 TRF Tandem_Repeat 226893 227101 364 + . . scaffold1283 GLEAN mRNA 234005 234280 0.3561 - . ID=CGI_10011794; scaffold1283 TRF Tandem_Repeat 234005 234280 543 + . . scaffold1283 GLEAN mRNA 241859 241910 0.432673 - . ID=CGI_10011796; scaffold1283 TRF Tandem_Repeat 241859 241910 104 + . . scaffold1283 GLEAN mRNA 249818 249931 0.432673 - . ID=CGI_10011796; scaffold1283 WUBlastX DNA_TcMar-Marin 249818 249931 46 + . . scaffold1283 GLEAN mRNA 250376 250573 0.432673 - . ID=CGI_10011796; scaffold1283 WUBlastX DNA_TcMar-Marin 250376 250573 27 + . . scaffold1283 GLEAN mRNA 245660 245763 0.432673 - . ID=CGI_10011796; scaffold1283 TRF Tandem_Repeat 245660 245763 190 + . . scaffold43696 GLEAN mRNA 3099 3911 0.0834374 + . ID=CGI_10011797; scaffold43696 WUBlastX LTR_Gypsy 3099 3911 134 + . . scaffold43696 GLEAN mRNA 2874 3752 0.0834374 + . ID=CGI_10011797; scaffold43696 WUBlastX LTR_DIRS 2874 3752 629 + . . scaffold43696 GLEAN mRNA 42020 42087 0.69515 + . ID=CGI_10011799; scaffold43696 TRF Tandem_Repeat 42020 42087 118 + . . scaffold43696 GLEAN mRNA 58226 58779 1 - . ID=CGI_10011800; scaffold43696 TRF Tandem_Repeat 58226 58779 929 + . . scaffold43696 GLEAN mRNA 67760 68261 0.99996 - . ID=CGI_10011801; scaffold43696 TRF Tandem_Repeat 67760 68261 731 + . . scaffold43696 GLEAN mRNA 73754 73784 0.99996 - . ID=CGI_10011801; scaffold43696 TRF Tandem_Repeat 73754 73784 53 + . . scaffold43696 GLEAN mRNA 104929 104960 0.904546 - . ID=CGI_10011802; scaffold43696 TRF Tandem_Repeat 104929 104960 64 + . . scaffold43696 GLEAN mRNA 106536 106566 0.904546 - . ID=CGI_10011802; scaffold43696 TRF Tandem_Repeat 106536 106566 62 + . . scaffold43696 GLEAN mRNA 133008 133052 0.999846 + . ID=CGI_10011803; scaffold43696 TRF Tandem_Repeat 133008 133052 90 + . . scaffold43696 GLEAN mRNA 189624 189661 0.990976 + . ID=CGI_10011804; scaffold43696 TRF Tandem_Repeat 189624 189661 76 + . . scaffold43696 GLEAN mRNA 206057 206084 0.287333 + . ID=CGI_10011805; scaffold43696 TRF Tandem_Repeat 206057 206084 56 + . . scaffold43696 GLEAN mRNA 202671 202766 0.287333 + . ID=CGI_10011805; scaffold43696 WUBlastX LTR_Gypsy 202671 202766 44 + . . scaffold43696 GLEAN mRNA 202859 203065 0.287333 + . ID=CGI_10011805; scaffold43696 WUBlastX LTR_Gypsy 202859 203065 63 + . . scaffold43696 GLEAN mRNA 202604 203065 0.287333 + . ID=CGI_10011805; scaffold43696 WUBlastX LTR_Gypsy 202604 203065 38 + . . scaffold43692 GLEAN mRNA 17051 17092 0.999572 - . ID=CGI_10011808; scaffold43692 TRF Tandem_Repeat 17051 17092 84 + . . scaffold43692 GLEAN mRNA 30152 30194 1 - . ID=CGI_10011809; scaffold43692 TRF Tandem_Repeat 30152 30194 86 + . . scaffold43692 GLEAN mRNA 30890 31031 1 - . ID=CGI_10011809; scaffold43692 TRF Tandem_Repeat 30890 31031 88 + . . scaffold43692 GLEAN mRNA 47185 47540 1 - . ID=CGI_10011810; scaffold43692 TRF Tandem_Repeat 47185 47540 694 + . . scaffold43692 GLEAN mRNA 182054 182746 1 - . ID=CGI_10011817; scaffold43692 WUBlastX LINE_L1 182054 182746 44 - . . scaffold43692 GLEAN mRNA 209077 209120 0.955032 + . ID=CGI_10011818; scaffold43692 TRF Tandem_Repeat 209077 209120 63 + . . scaffold43692 GLEAN mRNA 211444 211482 0.955032 + . ID=CGI_10011818; scaffold43692 TRF Tandem_Repeat 211444 211482 78 + . . scaffold43692 GLEAN mRNA 211600 211659 0.955032 + . ID=CGI_10011818; scaffold43692 TRF Tandem_Repeat 211600 211659 111 + . . scaffold43692 GLEAN mRNA 267535 267578 0.648527 + . ID=CGI_10011823; scaffold43692 TRF Tandem_Repeat 267535 267578 88 + . . scaffold43692 GLEAN mRNA 267615 267655 0.648527 + . ID=CGI_10011823; scaffold43692 TRF Tandem_Repeat 267615 267655 82 + . . scaffold43692 GLEAN mRNA 285652 285691 0.998382 - . ID=CGI_10011825; scaffold43692 TRF Tandem_Repeat 285652 285691 80 + . . scaffold1235 GLEAN mRNA 5490 5538 0.990769 - . ID=CGI_10011827; scaffold1235 TRF Tandem_Repeat 5490 5538 89 + . . scaffold1235 GLEAN mRNA 12351 12400 0.990769 - . ID=CGI_10011827; scaffold1235 TRF Tandem_Repeat 12351 12400 66 + . . scaffold1235 GLEAN mRNA 19420 19453 0.738057 - . ID=CGI_10011828; scaffold1235 TRF Tandem_Repeat 19420 19453 68 + . . scaffold1235 GLEAN mRNA 19822 19884 0.738057 - . ID=CGI_10011828; scaffold1235 TRF Tandem_Repeat 19822 19884 101 + . . scaffold1235 GLEAN mRNA 24706 26100 0.738057 - . ID=CGI_10011828; scaffold1235 WUBlastX LTR_Gypsy 24706 26100 905 + . . scaffold1235 GLEAN mRNA 26114 28954 0.738057 - . ID=CGI_10011828; scaffold1235 WUBlastX LTR_Gypsy 26114 28954 2574 + . . scaffold1235 GLEAN mRNA 28457 29047 0.738057 - . ID=CGI_10011828; scaffold1235 WUBlastX LTR_Gypsy 28457 29047 106 + . . scaffold1235 GLEAN mRNA 24589 25332 0.738057 - . ID=CGI_10011828; scaffold1235 WUBlastX LTR_Gypsy 24589 25332 23 + . . scaffold1235 GLEAN mRNA 32897 33454 0.738057 - . ID=CGI_10011828; scaffold1235 WUBlastX LINE_L1-Tx1 32897 33454 73 + . . scaffold1235 GLEAN mRNA 24706 26100 0.999999 + . ID=CGI_10011829; scaffold1235 WUBlastX LTR_Gypsy 24706 26100 905 + . . scaffold1235 GLEAN mRNA 26114 26124 0.999999 + . ID=CGI_10011829; scaffold1235 WUBlastX LTR_Gypsy 26114 28954 2574 + . . scaffold1235 GLEAN mRNA 24706 25332 0.999999 + . ID=CGI_10011829; scaffold1235 WUBlastX LTR_Gypsy 24589 25332 23 + . . scaffold1235 GLEAN mRNA 75696 76051 0.991373 + . ID=CGI_10011831; scaffold1235 TRF Tandem_Repeat 75696 76051 508 + . . scaffold1235 GLEAN mRNA 75696 76051 0.991373 + . ID=CGI_10011831; scaffold1235 TRF Tandem_Repeat 75696 76051 536 + . . scaffold1235 GLEAN mRNA 101177 101239 0.450725 + . ID=CGI_10011833; scaffold1235 WUBlastX LINE_RTE-X 101177 101239 21 + . . scaffold1235 GLEAN mRNA 101863 102075 0.450725 + . ID=CGI_10011833; scaffold1235 WUBlastX LINE_RTE-X 101863 102075 80 + . . scaffold1235 GLEAN mRNA 117271 117315 0.450725 + . ID=CGI_10011833; scaffold1235 TRF Tandem_Repeat 117271 117315 90 + . . scaffold1235 GLEAN mRNA 122610 122634 0.450725 + . ID=CGI_10011833; scaffold1235 TRF Tandem_Repeat 122610 122634 50 + . . scaffold1235 GLEAN mRNA 127267 127323 0.450725 + . ID=CGI_10011833; scaffold1235 TRF Tandem_Repeat 127267 127323 89 + . . scaffold1235 GLEAN mRNA 160641 160721 0.960098 - . ID=CGI_10011836; scaffold1235 WUBlastX LINE_L2 160641 160721 24 - . . scaffold1235 GLEAN mRNA 160720 161097 0.960098 - . ID=CGI_10011836; scaffold1235 WUBlastX LINE_L2 160720 161097 29 - . . scaffold1235 GLEAN mRNA 185683 185684 0.998469 - . ID=CGI_10011838; scaffold1235 TRF Tandem_Repeat 185621 185684 128 + . . scaffold1235 GLEAN mRNA 204413 204455 0.761513 - . ID=CGI_10011842; scaffold1235 TRF Tandem_Repeat 204413 204455 86 + . . scaffold1448 GLEAN mRNA 10672 10728 0.999948 + . ID=CGI_10011852; scaffold1448 TRF Tandem_Repeat 10672 10728 114 + . . scaffold1448 GLEAN mRNA 3545 3646 0.999948 + . ID=CGI_10011852; scaffold1448 WUBlastX LINE_RTE-X 3545 3646 27 - . . scaffold1448 GLEAN mRNA 4050 4229 0.999948 + . ID=CGI_10011852; scaffold1448 WUBlastX LINE_RTE-X 4050 4229 102 - . . scaffold1448 GLEAN mRNA 4107 4319 0.999948 + . ID=CGI_10011852; scaffold1448 WUBlastX LINE_RTE-X 4107 4319 91 - . . scaffold1448 GLEAN mRNA 3661 4110 0.999948 + . ID=CGI_10011852; scaffold1448 WUBlastX LINE_RTE-X 3661 4110 229 - . . scaffold1448 GLEAN mRNA 4107 4262 0.999948 + . ID=CGI_10011852; scaffold1448 WUBlastX LINE_RTE-X 4107 4262 99 - . . scaffold1448 GLEAN mRNA 30141 30833 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 30141 30833 441 - . . scaffold1448 GLEAN mRNA 30819 31421 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 30819 31421 470 - . . scaffold1448 GLEAN mRNA 31489 31614 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 31489 31899 60 - . . scaffold1448 GLEAN mRNA 28861 29199 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 28861 29199 131 - . . scaffold1448 GLEAN mRNA 29181 29684 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 29181 29684 161 - . . scaffold1448 GLEAN mRNA 29301 29786 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 29301 29786 116 - . . scaffold1448 GLEAN mRNA 29798 30106 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 29798 30106 66 - . . scaffold1448 GLEAN mRNA 29855 30106 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 29855 30106 81 - . . scaffold1448 GLEAN mRNA 29763 29834 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 29763 29834 45 - . . scaffold1448 GLEAN mRNA 206662 206697 0.97529 + . ID=CGI_10011856; scaffold1448 TRF Tandem_Repeat 206662 206697 54 + . . scaffold1448 GLEAN mRNA 208008 208054 0.97529 + . ID=CGI_10011856; scaffold1448 TRF Tandem_Repeat 208008 208054 94 + . . scaffold1448 GLEAN mRNA 210062 210791 0.97529 + . ID=CGI_10011856; scaffold1448 TRF Tandem_Repeat 210062 210791 1322 + . . scaffold1448 GLEAN mRNA 220879 220986 0.97529 + . ID=CGI_10011856; scaffold1448 WUBlastX LTR_Pao 220879 220986 28 + . . scaffold1448 GLEAN mRNA 217442 219064 0.97529 + . ID=CGI_10011856; scaffold1448 WUBlastX LTR_Pao 217442 219064 712 + . . scaffold1448 GLEAN mRNA 220930 222450 0.97529 + . ID=CGI_10011856; scaffold1448 WUBlastX LTR_Pao 220930 222450 906 + . . scaffold1448 GLEAN mRNA 217034 219055 0.97529 + . ID=CGI_10011856; scaffold1448 WUBlastX LTR_Pao 217034 219055 675 + . . scaffold1448 GLEAN mRNA 268778 268915 0.943479 - . ID=CGI_10011859; scaffold1448 WUBlastX DNA_Kolobok-Hyd 268778 268972 41 - . . scaffold1448 GLEAN mRNA 269216 269920 0.740287 - . ID=CGI_10011860; scaffold1448 WUBlastX DNA_IS4EU 269216 269920 80 - . . scaffold1448 GLEAN mRNA 269630 270040 0.740287 - . ID=CGI_10011860; scaffold1448 WUBlastX DNA_Kolobok-Hyd 269630 270040 23 - . . scaffold122 GLEAN mRNA 23622 23832 0.785046 + . ID=CGI_10011865; scaffold122 TRF Tandem_Repeat 23622 23832 217 + . . scaffold122 GLEAN mRNA 28060 28368 0.785046 + . ID=CGI_10011865; scaffold122 TRF Tandem_Repeat 28060 28368 222 + . . scaffold122 GLEAN mRNA 28081 28556 0.785046 + . ID=CGI_10011865; scaffold122 TRF Tandem_Repeat 28081 28556 273 + . . scaffold122 GLEAN mRNA 28085 28522 0.785046 + . ID=CGI_10011865; scaffold122 TRF Tandem_Repeat 28085 28522 108 + . . scaffold122 GLEAN mRNA 28257 28392 0.785046 + . ID=CGI_10011865; scaffold122 TRF Tandem_Repeat 28257 28392 82 + . . scaffold122 GLEAN mRNA 28090 28533 0.785046 + . ID=CGI_10011865; scaffold122 TRF Tandem_Repeat 28090 28533 191 + . . scaffold122 GLEAN mRNA 43135 43394 0.785046 + . ID=CGI_10011865; scaffold122 TRF Tandem_Repeat 43135 43394 167 + . . scaffold122 GLEAN mRNA 43160 43269 0.785046 + . ID=CGI_10011865; scaffold122 TRF Tandem_Repeat 43160 43269 68 + . . scaffold122 GLEAN mRNA 122955 122996 0.999764 + . ID=CGI_10011869; scaffold122 TRF Tandem_Repeat 122955 122996 84 + . . scaffold122 GLEAN mRNA 135236 135288 0.999675 + . ID=CGI_10011870; scaffold122 TRF Tandem_Repeat 135236 135288 106 + . . scaffold122 GLEAN mRNA 202354 202599 0.99996 - . ID=CGI_10011875; scaffold122 TRF Tandem_Repeat 202354 202599 375 + . . scaffold122 GLEAN mRNA 203937 203983 0.99996 - . ID=CGI_10011875; scaffold122 TRF Tandem_Repeat 203937 203983 94 + . . scaffold122 GLEAN mRNA 219370 221056 1 - . ID=CGI_10011877; scaffold122 TRF Tandem_Repeat 219370 221056 1824 + . . scaffold122 GLEAN mRNA 219374 221056 1 - . ID=CGI_10011877; scaffold122 TRF Tandem_Repeat 219374 221056 1834 + . . scaffold122 GLEAN mRNA 220137 221335 1 - . ID=CGI_10011877; scaffold122 TRF Tandem_Repeat 220137 221335 1453 + . . scaffold122 GLEAN mRNA 221054 221340 1 - . ID=CGI_10011877; scaffold122 TRF Tandem_Repeat 221054 221340 265 + . . scaffold122 GLEAN mRNA 222576 223838 1 - . ID=CGI_10011877; scaffold122 TRF Tandem_Repeat 222576 223838 1035 + . . scaffold122 GLEAN mRNA 225737 227572 1 - . ID=CGI_10011877; scaffold122 TRF Tandem_Repeat 225737 227572 2533 + . . scaffold122 GLEAN mRNA 246994 247028 0.999534 - . ID=CGI_10011879; scaffold122 TRF Tandem_Repeat 246994 247028 70 + . . scaffold122 GLEAN mRNA 255083 255343 0.999999 - . ID=CGI_10011880; scaffold122 WUBlastX DNA_Kolobok 255083 255343 94 - . . scaffold122 GLEAN mRNA 255466 255627 0.999999 - . ID=CGI_10011880; scaffold122 WUBlastX DNA_Kolobok 255466 255651 114 - . . scaffold1843 GLEAN mRNA 150721 152115 0.99944 - . ID=CGI_10011886; scaffold1843 TRF Tandem_Repeat 150721 152115 889 + . . scaffold1843 GLEAN mRNA 150817 152088 0.99944 - . ID=CGI_10011886; scaffold1843 TRF Tandem_Repeat 150817 152088 1340 + . . scaffold1843 GLEAN mRNA 150740 152114 0.99944 - . ID=CGI_10011886; scaffold1843 TRF Tandem_Repeat 150740 152114 1090 + . . scaffold1843 GLEAN mRNA 153773 153806 0.99944 - . ID=CGI_10011886; scaffold1843 TRF Tandem_Repeat 153773 153806 50 + . . scaffold1843 GLEAN mRNA 173642 173677 1 - . ID=CGI_10011888; scaffold1843 TRF Tandem_Repeat 173642 173677 72 + . . scaffold1843 GLEAN mRNA 173720 173786 1 - . ID=CGI_10011888; scaffold1843 TRF Tandem_Repeat 173720 173786 134 + . . scaffold1843 GLEAN mRNA 179131 179356 1 + . ID=CGI_10011889; scaffold1843 TRF Tandem_Repeat 179131 179356 416 + . . scaffold1843 GLEAN mRNA 197476 197501 0.999995 - . ID=CGI_10011891; scaffold1843 TRF Tandem_Repeat 197476 197501 52 + . . scaffold43702 GLEAN mRNA 10612 12066 0.998449 + . ID=CGI_10011897; scaffold43702 WUBlastX DNA_hAT 10612 12066 475 - . . scaffold43702 GLEAN mRNA 10612 12018 1 - . ID=CGI_10011898; scaffold43702 WUBlastX DNA_hAT 10612 12066 475 - . . scaffold43702 GLEAN mRNA 35942 36098 0.852547 + . ID=CGI_10011899; scaffold43702 TRF Tandem_Repeat 35942 36098 221 + . . scaffold43702 GLEAN mRNA 61755 61793 0.577691 + . ID=CGI_10011901; scaffold43702 TRF Tandem_Repeat 61755 61793 78 + . . scaffold43702 GLEAN mRNA 62504 62550 0.577691 + . ID=CGI_10011901; scaffold43702 TRF Tandem_Repeat 62504 62550 94 + . . scaffold43702 GLEAN mRNA 78279 78328 0.245591 - . ID=CGI_10011903; scaffold43702 TRF Tandem_Repeat 78279 78328 57 + . . scaffold43702 GLEAN mRNA 75655 76242 0.245591 - . ID=CGI_10011903; scaffold43702 WUBlastX LINE_RTE-BovB 75655 76242 211 + . . scaffold43702 GLEAN mRNA 80217 80966 0.245591 - . ID=CGI_10011903; scaffold43702 WUBlastX LINE_RTE-X 80217 80966 168 - . . scaffold43702 GLEAN mRNA 75811 76236 0.245591 - . ID=CGI_10011903; scaffold43702 WUBlastX LINE_RTE-BovB 75811 76236 355 + . . scaffold43702 GLEAN mRNA 75611 75799 0.245591 - . ID=CGI_10011903; scaffold43702 WUBlastX LINE_RTE-BovB 75611 75799 138 + . . scaffold43702 GLEAN mRNA 90369 90408 0.245591 - . ID=CGI_10011903; scaffold43702 TRF Tandem_Repeat 90369 90408 71 + . . scaffold43702 GLEAN mRNA 121532 121576 1 - . ID=CGI_10011905; scaffold43702 TRF Tandem_Repeat 121532 121576 83 + . . scaffold43702 GLEAN mRNA 128408 128718 0.999675 + . ID=CGI_10011906; scaffold43702 TRF Tandem_Repeat 128408 128718 595 + . . scaffold43702 GLEAN mRNA 144337 144353 0.248322 - . ID=CGI_10011907; scaffold43702 TRF Tandem_Repeat 143984 144353 421 + . . scaffold43702 GLEAN mRNA 184569 184637 0.990375 - . ID=CGI_10011911; scaffold43702 TRF Tandem_Repeat 184569 184637 131 + . . scaffold43702 GLEAN mRNA 191939 191975 0.990375 - . ID=CGI_10011911; scaffold43702 TRF Tandem_Repeat 191939 191975 74 + . . scaffold43702 GLEAN mRNA 215269 215346 0.618241 + . ID=CGI_10011914; scaffold43702 WUBlastX LINE_CR1 215269 215895 63 + . . scaffold43702 GLEAN mRNA 215134 215208 0.618241 + . ID=CGI_10011914; scaffold43702 WUBlastX LINE_L1 215086 215208 50 + . . scaffold43702 GLEAN mRNA 215269 215895 1 - . ID=CGI_10011915; scaffold43702 WUBlastX LINE_CR1 215269 215895 63 + . . scaffold43702 GLEAN mRNA 215374 217032 1 - . ID=CGI_10011915; scaffold43702 WUBlastX LINE_RTE-X 215374 217032 242 + . . scaffold1874 GLEAN mRNA 2403 2748 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 2403 2748 629 + . . scaffold1874 GLEAN mRNA 4300 4528 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 4300 4528 422 + . . scaffold1874 GLEAN mRNA 9418 9758 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 9418 9758 150 + . . scaffold1874 GLEAN mRNA 9853 10017 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 9853 10017 106 + . . scaffold1874 GLEAN mRNA 11296 11437 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 11296 11437 239 + . . scaffold1874 GLEAN mRNA 13195 13319 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 13195 13319 153 + . . scaffold1874 GLEAN mRNA 13866 13993 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 13866 13993 91 + . . scaffold1874 GLEAN mRNA 16527 17025 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 16527 17025 353 + . . scaffold1874 GLEAN mRNA 16609 16874 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 16609 16874 433 + . . scaffold1874 GLEAN mRNA 21014 21622 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 21014 21622 575 + . . scaffold1874 GLEAN mRNA 23706 23788 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 23706 23788 148 + . . scaffold1874 GLEAN mRNA 24398 24558 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 24398 24558 250 + . . scaffold1874 GLEAN mRNA 24567 24757 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 24567 24757 231 + . . scaffold1874 GLEAN mRNA 28893 29100 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 28893 29100 93 + . . scaffold1874 GLEAN mRNA 28963 29490 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 28963 29490 819 + . . scaffold1874 GLEAN mRNA 29480 29584 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 29480 29584 70 + . . scaffold1874 GLEAN mRNA 29490 29694 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 29490 29694 311 + . . scaffold1874 GLEAN mRNA 30008 30230 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 30008 30230 365 + . . scaffold1874 GLEAN mRNA 30733 31140 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 30733 31140 283 + . . scaffold1874 GLEAN mRNA 30707 31127 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 30707 31127 133 + . . scaffold1874 GLEAN mRNA 30697 31148 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 30697 31148 705 + . . scaffold1874 GLEAN mRNA 31038 31111 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 31038 31111 63 + . . scaffold1874 GLEAN mRNA 32836 32896 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 32836 32896 122 + . . scaffold1874 GLEAN mRNA 34120 34216 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 34120 34216 135 + . . scaffold1874 GLEAN mRNA 34252 34373 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 34252 34373 109 + . . scaffold1874 GLEAN mRNA 35442 36090 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 35442 36090 745 + . . scaffold1874 GLEAN mRNA 35442 36090 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 35442 36090 678 + . . scaffold1874 GLEAN mRNA 39158 39177 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 39158 39392 355 + . . scaffold1874 GLEAN mRNA 44418 44544 0.999675 - . ID=CGI_10011919; scaffold1874 TRF Tandem_Repeat 44418 44544 209 + . . scaffold1874 GLEAN mRNA 48890 49019 0.999675 - . ID=CGI_10011919; scaffold1874 TRF Tandem_Repeat 48890 49019 233 + . . scaffold1874 GLEAN mRNA 49939 49993 0.999675 - . ID=CGI_10011919; scaffold1874 TRF Tandem_Repeat 49939 49993 110 + . . scaffold1874 GLEAN mRNA 69662 70532 0.999676 + . ID=CGI_10011920; scaffold1874 TRF Tandem_Repeat 69662 70532 1403 + . . scaffold1874 GLEAN mRNA 70954 71093 0.999676 + . ID=CGI_10011920; scaffold1874 TRF Tandem_Repeat 70954 71093 208 + . . scaffold1874 GLEAN mRNA 75006 78048 0.84091 + . ID=CGI_10011921; scaffold1874 TRF Tandem_Repeat 74743 78048 4142 + . . scaffold1874 GLEAN mRNA 75006 78048 0.84091 + . ID=CGI_10011921; scaffold1874 TRF Tandem_Repeat 74746 78048 4163 + . . scaffold1874 GLEAN mRNA 82177 82442 0.84091 + . ID=CGI_10011921; scaffold1874 TRF Tandem_Repeat 82177 82442 397 + . . scaffold1874 GLEAN mRNA 118455 118859 0.558382 - . ID=CGI_10011923; scaffold1874 WUBlastX LINE_L1 118455 118859 46 - . . scaffold1874 GLEAN mRNA 127401 128478 0.992091 + . ID=CGI_10011924; scaffold1874 TRF Tandem_Repeat 127401 128478 1525 + . . scaffold1874 GLEAN mRNA 141837 142202 0.999999 + . ID=CGI_10011926; scaffold1874 WUBlastX LTR_ERV1 141837 142202 24 + . . scaffold1874 GLEAN mRNA 238306 239485 0.695636 - . ID=CGI_10011932; scaffold1874 TRF Tandem_Repeat 238306 239485 1592 + . . scaffold1874 GLEAN mRNA 241789 241863 0.695636 - . ID=CGI_10011932; scaffold1874 TRF Tandem_Repeat 241789 241863 141 + . . scaffold1874 GLEAN mRNA 248016 248064 0.695636 - . ID=CGI_10011932; scaffold1874 TRF Tandem_Repeat 248016 248064 89 + . . scaffold1874 GLEAN mRNA 248152 248199 0.695636 - . ID=CGI_10011932; scaffold1874 TRF Tandem_Repeat 248152 248199 96 + . . scaffold1874 GLEAN mRNA 256147 256203 0.695636 - . ID=CGI_10011932; scaffold1874 TRF Tandem_Repeat 256147 256203 105 + . . scaffold1874 GLEAN mRNA 296406 296900 0.52871 + . ID=CGI_10011933; scaffold1874 WUBlastX LINE_L1 296406 296900 24 + . . scaffold1720 GLEAN mRNA 27056 27087 0.63257 - . ID=CGI_10011937; scaffold1720 TRF Tandem_Repeat 27056 27087 55 + . . scaffold1720 GLEAN mRNA 27121 27175 0.63257 - . ID=CGI_10011937; scaffold1720 TRF Tandem_Repeat 27121 27175 58 + . . scaffold1720 GLEAN mRNA 34137 34168 1 - . ID=CGI_10011938; scaffold1720 TRF Tandem_Repeat 34137 34168 55 + . . scaffold1720 GLEAN mRNA 50843 50871 1 - . ID=CGI_10011940; scaffold1720 TRF Tandem_Repeat 50843 50871 58 + . . scaffold1720 GLEAN mRNA 107638 107671 1 + . ID=CGI_10011943; scaffold1720 TRF Tandem_Repeat 107638 107671 68 + . . scaffold1720 GLEAN mRNA 109816 109857 1 + . ID=CGI_10011943; scaffold1720 TRF Tandem_Repeat 109816 109857 84 + . . scaffold1720 GLEAN mRNA 159607 159644 0.836499 - . ID=CGI_10011947; scaffold1720 TRF Tandem_Repeat 159607 159644 76 + . . scaffold1720 GLEAN mRNA 161919 161980 0.836499 - . ID=CGI_10011947; scaffold1720 TRF Tandem_Repeat 161919 161980 124 + . . scaffold1720 GLEAN mRNA 164999 165046 0.836499 - . ID=CGI_10011947; scaffold1720 TRF Tandem_Repeat 164999 165046 96 + . . scaffold1720 GLEAN mRNA 175609 175684 0.836499 - . ID=CGI_10011947; scaffold1720 TRF Tandem_Repeat 175609 175684 152 + . . scaffold1720 GLEAN mRNA 194265 194326 0.836499 - . ID=CGI_10011947; scaffold1720 TRF Tandem_Repeat 194265 194326 61 + . . scaffold1720 GLEAN mRNA 198705 198825 0.836499 - . ID=CGI_10011947; scaffold1720 TRF Tandem_Repeat 198705 198825 192 + . . scaffold1720 GLEAN mRNA 210184 210341 0.836499 - . ID=CGI_10011947; scaffold1720 TRF Tandem_Repeat 210184 210341 253 + . . scaffold1720 GLEAN mRNA 260751 261561 0.986437 - . ID=CGI_10011949; scaffold1720 TRF Tandem_Repeat 260751 261561 1231 + . . scaffold1720 GLEAN mRNA 281525 282506 1 + . ID=CGI_10011951; scaffold1720 TRF Tandem_Repeat 281525 282506 1856 + . . scaffold1877 GLEAN mRNA 65702 66009 0.991006 + . ID=CGI_10011953; scaffold1877 TRF Tandem_Repeat 65702 66009 421 + . . scaffold1877 GLEAN mRNA 67159 68901 0.991006 + . ID=CGI_10011953; scaffold1877 TRF Tandem_Repeat 67159 68901 2537 + . . scaffold1877 GLEAN mRNA 79455 79649 1 + . ID=CGI_10011954; scaffold1877 TRF Tandem_Repeat 79455 79649 311 + . . scaffold1877 GLEAN mRNA 85001 85076 1 - . ID=CGI_10011955; scaffold1877 TRF Tandem_Repeat 85001 85076 56 + . . scaffold1877 GLEAN mRNA 85001 85081 1 - . ID=CGI_10011955; scaffold1877 TRF Tandem_Repeat 85001 85081 74 + . . scaffold1877 GLEAN mRNA 94686 95101 0.999922 - . ID=CGI_10011956; scaffold1877 TRF Tandem_Repeat 94686 95101 511 + . . scaffold1877 GLEAN mRNA 98822 98962 0.999922 - . ID=CGI_10011956; scaffold1877 WUBlastX DNA_NOF? 98822 98962 35 - . . scaffold1877 GLEAN mRNA 106337 106370 1 + . ID=CGI_10011957; scaffold1877 TRF Tandem_Repeat 106337 106370 68 + . . scaffold1877 GLEAN mRNA 107044 107117 1 + . ID=CGI_10011957; scaffold1877 TRF Tandem_Repeat 107044 107117 112 + . . scaffold1877 GLEAN mRNA 114713 115272 0.544675 + . ID=CGI_10011958; scaffold1877 TRF Tandem_Repeat 114713 115272 1057 + . . scaffold1877 GLEAN mRNA 121571 121644 0.544675 + . ID=CGI_10011958; scaffold1877 TRF Tandem_Repeat 121571 121644 53 + . . scaffold1877 GLEAN mRNA 207754 208209 0.999676 - . ID=CGI_10011959; scaffold1877 TRF Tandem_Repeat 207754 208209 804 + . . scaffold1877 GLEAN mRNA 271446 271847 0.629158 + . ID=CGI_10011961; scaffold1877 TRF Tandem_Repeat 271446 271847 540 + . . scaffold1877 GLEAN mRNA 275021 275066 0.629158 + . ID=CGI_10011961; scaffold1877 TRF Tandem_Repeat 275021 275066 65 + . . scaffold1877 GLEAN mRNA 275468 275677 0.629158 + . ID=CGI_10011961; scaffold1877 WUBlastX LINE_RTE-BovB 275468 275677 45 - . . scaffold1877 GLEAN mRNA 289962 290048 1 + . ID=CGI_10011962; scaffold1877 TRF Tandem_Repeat 289962 290048 93 + . . scaffold1877 GLEAN mRNA 290114 290334 1 + . ID=CGI_10011962; scaffold1877 TRF Tandem_Repeat 290114 290334 130 + . . scaffold1877 GLEAN mRNA 290114 290306 1 + . ID=CGI_10011962; scaffold1877 TRF Tandem_Repeat 290114 290306 183 + . . scaffold1877 GLEAN mRNA 290333 290577 1 + . ID=CGI_10011962; scaffold1877 TRF Tandem_Repeat 290333 290577 217 + . . scaffold1877 GLEAN mRNA 299290 299493 1 + . ID=CGI_10011963; scaffold1877 WUBlastX LINE_RTE-X 299290 299493 83 + . . scaffold1877 GLEAN mRNA 299290 299562 1 + . ID=CGI_10011963; scaffold1877 WUBlastX LINE_RTE-X 299290 299562 55 + . . scaffold1877 GLEAN mRNA 298061 298378 1 + . ID=CGI_10011963; scaffold1877 WUBlastX LINE_RTE-X 298061 298378 175 + . . scaffold1877 GLEAN mRNA 298001 298309 1 + . ID=CGI_10011963; scaffold1877 WUBlastX LINE_Rex-Babar 298001 298309 47 + . . scaffold1877 GLEAN mRNA 298378 298944 1 + . ID=CGI_10011963; scaffold1877 WUBlastX LINE_RTE-X 298378 298944 206 + . . scaffold43708 GLEAN mRNA 3177 3210 0.959931 - . ID=CGI_10011964; scaffold43708 TRF Tandem_Repeat 3177 3210 59 + . . scaffold43708 GLEAN mRNA 3549 3853 0.959931 - . ID=CGI_10011964; scaffold43708 TRF Tandem_Repeat 3549 3853 477 + . . scaffold43708 GLEAN mRNA 3955 4097 0.959931 - . ID=CGI_10011964; scaffold43708 TRF Tandem_Repeat 3955 4097 123 + . . scaffold43708 GLEAN mRNA 15038 15089 0.959931 - . ID=CGI_10011964; scaffold43708 TRF Tandem_Repeat 15038 15089 50 + . . scaffold43708 GLEAN mRNA 17379 17646 0.959931 - . ID=CGI_10011964; scaffold43708 TRF Tandem_Repeat 17379 17646 513 + . . scaffold43708 GLEAN mRNA 18110 18434 0.959931 - . ID=CGI_10011964; scaffold43708 TRF Tandem_Repeat 18110 18434 374 + . . scaffold43708 GLEAN mRNA 18119 18434 0.959931 - . ID=CGI_10011964; scaffold43708 TRF Tandem_Repeat 18119 18434 433 + . . scaffold43708 GLEAN mRNA 19321 19391 0.959931 - . ID=CGI_10011964; scaffold43708 TRF Tandem_Repeat 19321 19391 79 + . . scaffold43708 GLEAN mRNA 21244 21889 0.959931 - . ID=CGI_10011964; scaffold43708 TRF Tandem_Repeat 21244 21889 977 + . . scaffold43708 GLEAN mRNA 21637 21732 0.959931 - . ID=CGI_10011964; scaffold43708 TRF Tandem_Repeat 21637 21732 51 + . . scaffold43708 GLEAN mRNA 30010 30107 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 30010 30107 70 + . . scaffold43708 GLEAN mRNA 30061 30107 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 30061 30107 67 + . . scaffold43708 GLEAN mRNA 32389 32455 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 32389 32455 84 + . . scaffold43708 GLEAN mRNA 36555 36611 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 36555 36611 96 + . . scaffold43708 GLEAN mRNA 37279 37317 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 37279 37317 78 + . . scaffold43708 GLEAN mRNA 37715 37753 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 37715 37753 78 + . . scaffold43708 GLEAN mRNA 39327 39372 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 39327 39372 83 + . . scaffold43708 GLEAN mRNA 41782 41823 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 41782 41823 84 + . . scaffold43708 GLEAN mRNA 41868 41912 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 41868 41912 90 + . . scaffold43708 GLEAN mRNA 41951 41982 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 41951 41982 64 + . . scaffold43708 GLEAN mRNA 43477 43509 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 43477 43509 59 + . . scaffold43708 GLEAN mRNA 43631 43701 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 43631 43701 142 + . . scaffold43708 GLEAN mRNA 46793 46908 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 46793 46908 214 + . . scaffold43708 GLEAN mRNA 47310 47343 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 47310 47343 68 + . . scaffold43708 GLEAN mRNA 47358 47393 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 47358 47393 63 + . . scaffold43708 GLEAN mRNA 48422 48468 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 48422 48468 94 + . . scaffold43708 GLEAN mRNA 48866 48914 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 48866 48914 98 + . . scaffold43708 GLEAN mRNA 71780 71973 0.999995 + . ID=CGI_10011967; scaffold43708 TRF Tandem_Repeat 71780 71973 281 + . . scaffold43708 GLEAN mRNA 72126 72237 0.999995 + . ID=CGI_10011967; scaffold43708 TRF Tandem_Repeat 72126 72237 170 + . . scaffold43708 GLEAN mRNA 80824 81011 0.999995 + . ID=CGI_10011967; scaffold43708 TRF Tandem_Repeat 80824 81011 324 + . . scaffold43708 GLEAN mRNA 75801 76199 0.999995 + . ID=CGI_10011967; scaffold43708 WUBlastX DNA_Sola 75801 76199 103 + . . scaffold43708 GLEAN mRNA 81460 82308 0.999995 + . ID=CGI_10011967; scaffold43708 WUBlastX DNA_Sola 81460 82308 318 + . . scaffold43708 GLEAN mRNA 133162 133186 0.948572 + . ID=CGI_10011970; scaffold43708 TRF Tandem_Repeat 133162 133186 50 + . . scaffold43708 GLEAN mRNA 133186 133248 0.948572 + . ID=CGI_10011970; scaffold43708 TRF Tandem_Repeat 133186 133248 112 + . . scaffold43708 GLEAN mRNA 132737 132805 0.948572 + . ID=CGI_10011970; scaffold43708 WUBlastX LINE_CR1 132737 132805 20 - . . scaffold43708 GLEAN mRNA 131971 132642 0.948572 + . ID=CGI_10011970; scaffold43708 WUBlastX LINE_CR1 131971 132642 170 - . . scaffold43708 GLEAN mRNA 160105 160159 0.948572 + . ID=CGI_10011970; scaffold43708 TRF Tandem_Repeat 160105 160159 110 + . . scaffold43708 GLEAN mRNA 160314 160367 0.948572 + . ID=CGI_10011970; scaffold43708 TRF Tandem_Repeat 160314 160367 108 + . . scaffold43708 GLEAN mRNA 130729 132540 0.948572 + . ID=CGI_10011970; scaffold43708 WUBlastX LINE_RTE-X 130729 132540 932 - . . scaffold43708 GLEAN mRNA 192006 192043 0.999351 + . ID=CGI_10011973; scaffold43708 TRF Tandem_Repeat 192006 192043 58 + . . scaffold43708 GLEAN mRNA 233379 233420 0.998643 + . ID=CGI_10011974; scaffold43708 TRF Tandem_Repeat 233379 233420 84 + . . scaffold43708 GLEAN mRNA 240106 240150 0.998643 + . ID=CGI_10011974; scaffold43708 TRF Tandem_Repeat 240106 240150 90 + . . scaffold43708 GLEAN mRNA 237762 238427 0.998643 + . ID=CGI_10011974; scaffold43708 WUBlastX LINE_L2 237762 238427 293 - . . scaffold43708 GLEAN mRNA 237017 237760 0.998643 + . ID=CGI_10011974; scaffold43708 WUBlastX LINE_CR1-L2 237017 237760 293 - . . scaffold43708 GLEAN mRNA 236971 237036 0.998643 + . ID=CGI_10011974; scaffold43708 WUBlastX LINE_CR1-L2 236971 237036 23 - . . scaffold43708 GLEAN mRNA 238080 238511 0.998643 + . ID=CGI_10011974; scaffold43708 WUBlastX LINE_L2 238080 238511 201 - . . scaffold43708 GLEAN mRNA 238086 238598 0.998643 + . ID=CGI_10011974; scaffold43708 WUBlastX LINE_CR1 238086 238598 143 - . . scaffold43708 GLEAN mRNA 239241 239300 0.998643 + . ID=CGI_10011974; scaffold43708 WUBlastX LINE_L2 239241 239300 21 - . . scaffold43708 GLEAN mRNA 271914 271960 1 + . ID=CGI_10011976; scaffold43708 TRF Tandem_Repeat 271914 271960 94 + . . scaffold1845 GLEAN mRNA 80445 80620 0.399666 - . ID=CGI_10011986; scaffold1845 TRF Tandem_Repeat 80445 80620 307 + . . scaffold1845 GLEAN mRNA 80769 80843 0.399666 - . ID=CGI_10011986; scaffold1845 TRF Tandem_Repeat 80769 80843 107 + . . scaffold1845 GLEAN mRNA 112697 112729 0.999027 - . ID=CGI_10011988; scaffold1845 TRF Tandem_Repeat 112697 112729 66 + . . scaffold1845 GLEAN mRNA 113930 113972 0.999027 - . ID=CGI_10011988; scaffold1845 TRF Tandem_Repeat 113930 113972 86 + . . scaffold1845 GLEAN mRNA 112697 112729 0.988799 + . ID=CGI_10011990; scaffold1845 TRF Tandem_Repeat 112697 112729 66 + . . scaffold1845 GLEAN mRNA 113930 113972 0.988799 + . ID=CGI_10011990; scaffold1845 TRF Tandem_Repeat 113930 113972 86 + . . scaffold1845 GLEAN mRNA 130017 130415 0.999965 - . ID=CGI_10011993; scaffold1845 WUBlastX LTR_ERV1 130017 130415 45 - . . scaffold1845 GLEAN mRNA 138929 139186 1 - . ID=CGI_10011994; scaffold1845 WUBlastX DNA_TcMar-Tigge 138929 139186 24 - . . scaffold1845 GLEAN mRNA 214009 214896 0.999988 - . ID=CGI_10012000; scaffold1845 TRF Tandem_Repeat 214009 214896 1050 + . . scaffold1845 GLEAN mRNA 217175 217232 0.999988 - . ID=CGI_10012000; scaffold1845 TRF Tandem_Repeat 217175 217232 73 + . . scaffold1845 GLEAN mRNA 217175 217226 0.999988 - . ID=CGI_10012000; scaffold1845 TRF Tandem_Repeat 217175 217226 86 + . . scaffold1884 GLEAN mRNA 6227 7307 1 + . ID=CGI_10012005; scaffold1884 TRF Tandem_Repeat 6227 7307 1600 + . . scaffold1884 GLEAN mRNA 7891 8166 1 + . ID=CGI_10012005; scaffold1884 TRF Tandem_Repeat 7891 8166 216 + . . scaffold1884 GLEAN mRNA 7895 8310 1 + . ID=CGI_10012005; scaffold1884 TRF Tandem_Repeat 7895 8310 478 + . . scaffold1884 GLEAN mRNA 10414 10465 1 + . ID=CGI_10012005; scaffold1884 TRF Tandem_Repeat 10414 10465 104 + . . scaffold1884 GLEAN mRNA 10730 10760 1 + . ID=CGI_10012005; scaffold1884 TRF Tandem_Repeat 10730 10760 62 + . . scaffold1884 GLEAN mRNA 11312 11644 1 + . ID=CGI_10012005; scaffold1884 TRF Tandem_Repeat 11312 11644 420 + . . scaffold1884 GLEAN mRNA 12294 12745 1 + . ID=CGI_10012005; scaffold1884 TRF Tandem_Repeat 12294 12745 715 + . . scaffold1884 GLEAN mRNA 13358 14037 1 + . ID=CGI_10012005; scaffold1884 TRF Tandem_Repeat 13358 14037 1096 + . . scaffold1884 GLEAN mRNA 19062 20721 1 - . ID=CGI_10012006; scaffold1884 TRF Tandem_Repeat 19062 20721 2071 + . . scaffold1884 GLEAN mRNA 18057 18293 1 - . ID=CGI_10012006; scaffold1884 WUBlastX LTR_Gypsy 18057 18293 29 - . . scaffold1884 GLEAN mRNA 20896 21189 1 - . ID=CGI_10012006; scaffold1884 WUBlastX LTR_Gypsy 20896 21189 49 - . . scaffold1884 GLEAN mRNA 33702 33941 1 - . ID=CGI_10012008; scaffold1884 WUBlastX LTR_Gypsy 33702 33941 20 - . . scaffold1884 GLEAN mRNA 53654 54544 0.962257 + . ID=CGI_10012009; scaffold1884 TRF Tandem_Repeat 53654 54544 717 + . . scaffold1884 GLEAN mRNA 53654 54513 0.962257 + . ID=CGI_10012009; scaffold1884 TRF Tandem_Repeat 53654 54513 643 + . . scaffold1884 GLEAN mRNA 53661 54513 0.962257 + . ID=CGI_10012009; scaffold1884 TRF Tandem_Repeat 53661 54513 667 + . . scaffold1884 GLEAN mRNA 59702 59727 0.962257 + . ID=CGI_10012009; scaffold1884 TRF Tandem_Repeat 59702 59727 52 + . . scaffold1884 GLEAN mRNA 62575 62616 0.962257 + . ID=CGI_10012009; scaffold1884 TRF Tandem_Repeat 62575 62616 50 + . . scaffold1884 GLEAN mRNA 69957 70217 0.962257 + . ID=CGI_10012009; scaffold1884 TRF Tandem_Repeat 69957 70217 271 + . . scaffold1884 GLEAN mRNA 88372 89088 0.970109 + . ID=CGI_10012010; scaffold1884 TRF Tandem_Repeat 88372 89088 582 + . . scaffold1884 GLEAN mRNA 88372 89088 0.970109 + . ID=CGI_10012010; scaffold1884 TRF Tandem_Repeat 88372 89088 691 + . . scaffold1884 GLEAN mRNA 89877 89930 0.970109 + . ID=CGI_10012010; scaffold1884 TRF Tandem_Repeat 89877 89930 99 + . . scaffold1884 GLEAN mRNA 93545 93595 0.970109 + . ID=CGI_10012010; scaffold1884 TRF Tandem_Repeat 93545 93595 102 + . . scaffold1884 GLEAN mRNA 109737 110197 1 + . ID=CGI_10012011; scaffold1884 TRF Tandem_Repeat 109737 110197 366 + . . scaffold1884 GLEAN mRNA 109737 110191 1 + . ID=CGI_10012011; scaffold1884 TRF Tandem_Repeat 109737 110191 463 + . . scaffold1884 GLEAN mRNA 118404 118767 0.528032 - . ID=CGI_10012012; scaffold1884 TRF Tandem_Repeat 118404 118767 440 + . . scaffold1884 GLEAN mRNA 118669 118765 0.528032 - . ID=CGI_10012012; scaffold1884 TRF Tandem_Repeat 118669 118765 50 + . . scaffold1884 GLEAN mRNA 120013 120066 0.528032 - . ID=CGI_10012012; scaffold1884 TRF Tandem_Repeat 120013 120066 108 + . . scaffold1884 GLEAN mRNA 134835 134941 0.998261 + . ID=CGI_10012014; scaffold1884 TRF Tandem_Repeat 134835 134941 196 + . . scaffold1884 GLEAN mRNA 137422 137574 0.998261 + . ID=CGI_10012014; scaffold1884 TRF Tandem_Repeat 137422 137574 306 + . . scaffold1884 GLEAN mRNA 142658 143488 0.998261 + . ID=CGI_10012014; scaffold1884 WUBlastX LINE_RTE-BovB 142658 143488 643 - . . scaffold1884 GLEAN mRNA 143027 143593 0.998261 + . ID=CGI_10012014; scaffold1884 WUBlastX LINE_CR1-L2 143027 143593 49 - . . scaffold1884 GLEAN mRNA 141424 142677 0.998261 + . ID=CGI_10012014; scaffold1884 WUBlastX LINE_RTE-BovB 141424 142677 897 - . . scaffold1884 GLEAN mRNA 141281 141418 0.998261 + . ID=CGI_10012014; scaffold1884 WUBlastX LINE_RTE-BovB 141281 141418 59 - . . scaffold1884 GLEAN mRNA 191141 191183 0.584528 + . ID=CGI_10012016; scaffold1884 TRF Tandem_Repeat 191141 191183 86 + . . scaffold1884 GLEAN mRNA 191400 192177 0.584528 + . ID=CGI_10012016; scaffold1884 TRF Tandem_Repeat 191400 192177 378 + . . scaffold1884 GLEAN mRNA 191420 191914 0.584528 + . ID=CGI_10012016; scaffold1884 TRF Tandem_Repeat 191420 191914 458 + . . scaffold1884 GLEAN mRNA 191494 192149 0.584528 + . ID=CGI_10012016; scaffold1884 TRF Tandem_Repeat 191494 192149 380 + . . scaffold1884 GLEAN mRNA 192735 194481 0.584528 + . ID=CGI_10012016; scaffold1884 TRF Tandem_Repeat 192735 194481 2254 + . . scaffold1884 GLEAN mRNA 194965 195011 0.584528 + . ID=CGI_10012016; scaffold1884 TRF Tandem_Repeat 194965 195011 94 + . . scaffold43726 GLEAN mRNA 58964 60524 0.55038 + . ID=CGI_10012020; scaffold43726 TRF Tandem_Repeat 58964 60621 2107 + . . scaffold43726 GLEAN mRNA 151586 151635 0.997652 - . ID=CGI_10012023; scaffold43726 TRF Tandem_Repeat 151586 151635 100 + . . scaffold43726 GLEAN mRNA 155990 156022 0.997652 - . ID=CGI_10012023; scaffold43726 TRF Tandem_Repeat 155990 156022 66 + . . scaffold43726 GLEAN mRNA 161640 161832 0.997652 - . ID=CGI_10012023; scaffold43726 TRF Tandem_Repeat 161640 161832 260 + . . scaffold43726 GLEAN mRNA 160567 160752 0.997652 - . ID=CGI_10012023; scaffold43726 WUBlastX LINE_RTE-X 160567 160752 93 - . . scaffold43726 GLEAN mRNA 160480 160785 0.997652 - . ID=CGI_10012023; scaffold43726 WUBlastX LINE_RTE-X 160480 160785 90 - . . scaffold43726 GLEAN mRNA 157303 157434 0.997652 - . ID=CGI_10012023; scaffold43726 WUBlastX LINE_RTE-X 157303 157434 70 + . . scaffold43726 GLEAN mRNA 192881 193026 0.999572 - . ID=CGI_10012025; scaffold43726 TRF Tandem_Repeat 192881 193026 109 + . . scaffold43726 GLEAN mRNA 191235 192074 0.999572 - . ID=CGI_10012025; scaffold43726 WUBlastX LINE_RTE-BovB 191235 192074 196 + . . scaffold43726 GLEAN mRNA 193127 193339 0.999572 - . ID=CGI_10012025; scaffold43726 WUBlastX LINE_RTE-X 193127 193339 38 + . . scaffold43726 GLEAN mRNA 191418 192074 0.999572 - . ID=CGI_10012025; scaffold43726 WUBlastX LINE_RTE-X 191418 192074 429 + . . scaffold43726 GLEAN mRNA 193091 193216 0.999572 - . ID=CGI_10012025; scaffold43726 WUBlastX LINE_RTE-X 193091 193216 46 + . . scaffold43726 GLEAN mRNA 211625 211867 0.998187 - . ID=CGI_10012026; scaffold43726 WUBlastX LINE_RTE-X 211625 211867 85 - . . scaffold43726 GLEAN mRNA 216766 217934 0.998187 - . ID=CGI_10012026; scaffold43726 TRF Tandem_Repeat 216766 217934 1136 + . . scaffold43726 GLEAN mRNA 222955 223572 0.998252 + . ID=CGI_10012027; scaffold43726 WUBlastX LINE_L2 222955 223572 211 - . . scaffold43726 GLEAN mRNA 222679 223482 0.998252 + . ID=CGI_10012027; scaffold43726 WUBlastX LINE_CR1-L2 222679 223482 95 - . . scaffold43726 GLEAN mRNA 245910 245946 0.998252 + . ID=CGI_10012027; scaffold43726 TRF Tandem_Repeat 245910 245946 74 + . . scaffold43726 GLEAN mRNA 248724 248749 0.998252 + . ID=CGI_10012027; scaffold43726 TRF Tandem_Repeat 248724 248749 52 + . . scaffold43726 GLEAN mRNA 268426 268956 0.78038 + . ID=CGI_10012028; scaffold43726 WUBlastX LINE_RTE-X 268426 268956 22 + . . scaffold43726 GLEAN mRNA 268441 268614 0.78038 + . ID=CGI_10012028; scaffold43726 WUBlastX LINE_RTE-X 268441 268614 83 + . . scaffold43726 GLEAN mRNA 299638 299686 0.54482 - . ID=CGI_10012029; scaffold43726 TRF Tandem_Repeat 299638 299686 71 + . . scaffold852 GLEAN mRNA 46350 46389 1 + . ID=CGI_10012033; scaffold852 TRF Tandem_Repeat 46350 46389 71 + . . scaffold852 GLEAN mRNA 50373 51098 1 + . ID=CGI_10012033; scaffold852 WUBlastX DNA_Kolobok-IS4 50373 51098 314 + . . scaffold852 GLEAN mRNA 51471 51782 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_IS4EU 51471 51782 59 - . . scaffold852 GLEAN mRNA 51859 51927 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_IS4EU 51859 51927 34 - . . scaffold852 GLEAN mRNA 52009 52047 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_IS4EU 52009 52047 22 - . . scaffold852 GLEAN mRNA 52515 52598 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_IS4EU 52515 52598 54 - . . scaffold852 GLEAN mRNA 51841 51924 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_IS4EU 51841 51924 27 - . . scaffold852 GLEAN mRNA 52202 52348 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_IS4EU 52202 52348 23 - . . scaffold852 GLEAN mRNA 51537 51707 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_IS4EU 51537 51707 74 - . . scaffold852 GLEAN mRNA 52443 52595 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_Kolobok-IS4 52443 52595 20 - . . scaffold852 GLEAN mRNA 50373 51098 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_Kolobok-IS4 50373 51098 314 + . . scaffold852 GLEAN mRNA 66717 69767 1 + . ID=CGI_10012036; scaffold852 WUBlastX LTR_Gypsy-Cigr 66717 69767 2144 - . . scaffold852 GLEAN mRNA 70439 71233 1 + . ID=CGI_10012036; scaffold852 WUBlastX LTR_Gypsy 70439 71233 76 - . . scaffold852 GLEAN mRNA 66714 70346 1 + . ID=CGI_10012036; scaffold852 WUBlastX LTR_Gypsy 66714 70346 1793 - . . scaffold852 GLEAN mRNA 66624 67109 1 + . ID=CGI_10012036; scaffold852 WUBlastX LTR_Gypsy 66624 67109 27 - . . scaffold852 GLEAN mRNA 70439 71098 1 + . ID=CGI_10012036; scaffold852 WUBlastX LTR_Gypsy-Cigr 70439 71098 209 - . . scaffold852 GLEAN mRNA 70349 70744 1 + . ID=CGI_10012036; scaffold852 WUBlastX LTR_Copia 70349 70744 67 - . . scaffold852 GLEAN mRNA 90073 90119 0.790855 + . ID=CGI_10012037; scaffold852 TRF Tandem_Repeat 90073 90119 94 + . . scaffold852 GLEAN mRNA 90525 90592 0.790855 + . ID=CGI_10012037; scaffold852 TRF Tandem_Repeat 90525 90592 136 + . . scaffold852 GLEAN mRNA 91207 91234 0.790855 + . ID=CGI_10012037; scaffold852 TRF Tandem_Repeat 91207 91234 56 + . . scaffold852 GLEAN mRNA 125447 125488 1 + . ID=CGI_10012039; scaffold852 TRF Tandem_Repeat 125447 125488 77 + . . scaffold852 GLEAN mRNA 121898 122167 1 + . ID=CGI_10012039; scaffold852 WUBlastX DNA_Merlin 121898 122167 47 + . . scaffold852 GLEAN mRNA 127389 127541 1 + . ID=CGI_10012039; scaffold852 WUBlastX DNA_IS4EU 127389 127541 52 + . . scaffold852 GLEAN mRNA 126817 127212 1 + . ID=CGI_10012039; scaffold852 WUBlastX DNA_IS4EU 126817 127212 90 + . . scaffold852 GLEAN mRNA 126724 127212 1 + . ID=CGI_10012039; scaffold852 WUBlastX DNA_Kolobok-IS4 126724 127212 83 + . . scaffold852 GLEAN mRNA 158244 158339 0.933872 + . ID=CGI_10012040; scaffold852 TRF Tandem_Repeat 158244 158339 192 + . . scaffold852 GLEAN mRNA 164877 165027 0.933872 + . ID=CGI_10012040; scaffold852 TRF Tandem_Repeat 164877 165027 178 + . . scaffold852 GLEAN mRNA 166546 166595 0.933872 + . ID=CGI_10012040; scaffold852 TRF Tandem_Repeat 166546 166595 82 + . . scaffold852 GLEAN mRNA 170504 170617 0.933872 + . ID=CGI_10012040; scaffold852 TRF Tandem_Repeat 170504 170617 126 + . . scaffold852 GLEAN mRNA 170711 170890 0.933872 + . ID=CGI_10012040; scaffold852 TRF Tandem_Repeat 170711 170890 135 + . . scaffold852 GLEAN mRNA 169586 170152 0.933872 + . ID=CGI_10012040; scaffold852 WUBlastX LTR_Ngaro 169586 170152 172 - . . scaffold852 GLEAN mRNA 192456 192731 0.533829 + . ID=CGI_10012041; scaffold852 TRF Tandem_Repeat 192456 192731 226 + . . scaffold852 GLEAN mRNA 192527 193041 0.533829 + . ID=CGI_10012041; scaffold852 TRF Tandem_Repeat 192527 193262 445 + . . scaffold852 GLEAN mRNA 192512 193041 0.533829 + . ID=CGI_10012041; scaffold852 TRF Tandem_Repeat 192512 193262 378 + . . scaffold852 GLEAN mRNA 192828 193006 0.533829 + . ID=CGI_10012041; scaffold852 TRF Tandem_Repeat 192828 193006 88 + . . scaffold852 GLEAN mRNA 192512 192825 0.533829 + . ID=CGI_10012041; scaffold852 TRF Tandem_Repeat 192512 192825 266 + . . scaffold852 GLEAN mRNA 240305 240665 0.9028 + . ID=CGI_10012043; scaffold852 TRF Tandem_Repeat 240305 240665 652 + . . scaffold852 GLEAN mRNA 249310 249350 0.9028 + . ID=CGI_10012043; scaffold852 TRF Tandem_Repeat 249310 249350 82 + . . scaffold852 GLEAN mRNA 250633 251262 0.9028 + . ID=CGI_10012043; scaffold852 TRF Tandem_Repeat 250633 251262 864 + . . scaffold852 GLEAN mRNA 250639 251257 0.9028 + . ID=CGI_10012043; scaffold852 TRF Tandem_Repeat 250639 251257 829 + . . scaffold852 GLEAN mRNA 252441 254099 0.9028 + . ID=CGI_10012043; scaffold852 TRF Tandem_Repeat 252441 254099 1975 + . . scaffold852 GLEAN mRNA 275658 275711 0.996496 + . ID=CGI_10012044; scaffold852 TRF Tandem_Repeat 275658 275711 108 + . . scaffold1822 GLEAN mRNA 85391 85436 0.999998 + . ID=CGI_10012049; scaffold1822 TRF Tandem_Repeat 85391 85436 92 + . . scaffold1822 GLEAN mRNA 101284 101494 0.998901 - . ID=CGI_10012050; scaffold1822 TRF Tandem_Repeat 101284 101494 167 + . . scaffold1822 GLEAN mRNA 101493 101663 0.998901 - . ID=CGI_10012050; scaffold1822 TRF Tandem_Repeat 101493 101663 216 + . . scaffold1822 GLEAN mRNA 102187 102272 0.998901 - . ID=CGI_10012050; scaffold1822 TRF Tandem_Repeat 102187 102272 91 + . . scaffold1822 GLEAN mRNA 102338 102513 0.998901 - . ID=CGI_10012050; scaffold1822 TRF Tandem_Repeat 102338 102513 144 + . . scaffold1822 GLEAN mRNA 102338 102529 0.998901 - . ID=CGI_10012050; scaffold1822 TRF Tandem_Repeat 102338 102529 208 + . . scaffold1822 GLEAN mRNA 102556 102698 0.998901 - . ID=CGI_10012050; scaffold1822 TRF Tandem_Repeat 102556 102698 151 + . . scaffold1822 GLEAN mRNA 105784 105899 0.998901 - . ID=CGI_10012050; scaffold1822 TRF Tandem_Repeat 105784 105899 137 + . . scaffold1822 GLEAN mRNA 106134 106166 0.998901 - . ID=CGI_10012050; scaffold1822 TRF Tandem_Repeat 106134 106166 66 + . . scaffold1822 GLEAN mRNA 107151 107204 0.998901 - . ID=CGI_10012050; scaffold1822 TRF Tandem_Repeat 107151 107204 108 + . . scaffold1822 GLEAN mRNA 107455 107570 0.998901 - . ID=CGI_10012050; scaffold1822 TRF Tandem_Repeat 107455 107570 137 + . . scaffold1822 GLEAN mRNA 121223 121261 0.318937 + . ID=CGI_10012053; scaffold1822 TRF Tandem_Repeat 121223 121261 64 + . . scaffold1822 GLEAN mRNA 125199 125224 0.318937 + . ID=CGI_10012053; scaffold1822 TRF Tandem_Repeat 125199 125224 52 + . . scaffold1822 GLEAN mRNA 163011 163041 0.993907 + . ID=CGI_10012056; scaffold1822 TRF Tandem_Repeat 163011 163041 53 + . . scaffold1822 GLEAN mRNA 188802 189266 0.999349 + . ID=CGI_10012060; scaffold1822 TRF Tandem_Repeat 188802 189266 702 + . . scaffold1822 GLEAN mRNA 189423 189613 0.999349 + . ID=CGI_10012060; scaffold1822 TRF Tandem_Repeat 189423 189613 373 + . . scaffold1822 GLEAN mRNA 188802 189266 1 - . ID=CGI_10012061; scaffold1822 TRF Tandem_Repeat 188802 189266 702 + . . scaffold1822 GLEAN mRNA 189423 189613 1 - . ID=CGI_10012061; scaffold1822 TRF Tandem_Repeat 189423 189613 373 + . . scaffold1822 GLEAN mRNA 205120 205197 0.998504 + . ID=CGI_10012062; scaffold1822 TRF Tandem_Repeat 205120 205197 86 + . . scaffold1822 GLEAN mRNA 205123 205189 0.998504 + . ID=CGI_10012062; scaffold1822 TRF Tandem_Repeat 205123 205189 107 + . . scaffold1822 GLEAN mRNA 205496 205661 0.998504 + . ID=CGI_10012062; scaffold1822 TRF Tandem_Repeat 205496 205661 179 + . . scaffold1822 GLEAN mRNA 205775 206326 0.998504 + . ID=CGI_10012062; scaffold1822 TRF Tandem_Repeat 205775 206326 700 + . . scaffold1822 GLEAN mRNA 244358 244408 0.998829 + . ID=CGI_10012064; scaffold1822 TRF Tandem_Repeat 244358 244408 102 + . . scaffold1822 GLEAN mRNA 247704 247737 0.998829 + . ID=CGI_10012064; scaffold1822 TRF Tandem_Repeat 247704 247737 68 + . . scaffold1822 GLEAN mRNA 268477 268534 0.994124 + . ID=CGI_10012065; scaffold1822 TRF Tandem_Repeat 268477 268534 109 + . . scaffold1822 GLEAN mRNA 280979 281808 1 - . ID=CGI_10012066; scaffold1822 TRF Tandem_Repeat 280979 281808 1104 + . . scaffold1822 GLEAN mRNA 285492 285542 1 - . ID=CGI_10012066; scaffold1822 TRF Tandem_Repeat 285492 285542 68 + . . scaffold1822 GLEAN mRNA 294142 294183 1 - . ID=CGI_10012066; scaffold1822 TRF Tandem_Repeat 294142 294183 57 + . . scaffold1822 GLEAN mRNA 294389 294423 1 - . ID=CGI_10012066; scaffold1822 TRF Tandem_Repeat 294389 294423 54 + . . scaffold1492 GLEAN mRNA 10098 10177 1 - . ID=CGI_10012067; scaffold1492 TRF Tandem_Repeat 10098 10177 133 + . . scaffold1492 GLEAN mRNA 10554 10612 1 - . ID=CGI_10012067; scaffold1492 TRF Tandem_Repeat 10554 10612 118 + . . scaffold1492 GLEAN mRNA 10847 11132 1 - . ID=CGI_10012067; scaffold1492 TRF Tandem_Repeat 10847 11132 473 + . . scaffold1492 GLEAN mRNA 11134 11159 1 - . ID=CGI_10012067; scaffold1492 TRF Tandem_Repeat 11134 11159 52 + . . scaffold1492 GLEAN mRNA 15959 16001 1 - . ID=CGI_10012067; scaffold1492 TRF Tandem_Repeat 15959 16001 86 + . . scaffold1492 GLEAN mRNA 16939 16993 1 + . ID=CGI_10012068; scaffold1492 TRF Tandem_Repeat 16939 16993 110 + . . scaffold1492 GLEAN mRNA 36013 36183 0.999675 - . ID=CGI_10012069; scaffold1492 TRF Tandem_Repeat 36013 36183 169 + . . scaffold1492 GLEAN mRNA 106527 106577 0.999676 + . ID=CGI_10012074; scaffold1492 TRF Tandem_Repeat 106527 106577 102 + . . scaffold1492 GLEAN mRNA 109512 109613 0.558395 + . ID=CGI_10012075; scaffold1492 TRF Tandem_Repeat 109512 109613 91 + . . scaffold1492 GLEAN mRNA 109524 109690 0.558395 + . ID=CGI_10012075; scaffold1492 TRF Tandem_Repeat 109524 109690 115 + . . scaffold1492 GLEAN mRNA 111055 111087 0.558395 + . ID=CGI_10012075; scaffold1492 TRF Tandem_Repeat 111055 111087 66 + . . scaffold1492 GLEAN mRNA 119486 119515 0.558395 + . ID=CGI_10012075; scaffold1492 TRF Tandem_Repeat 119486 119515 51 + . . scaffold1492 GLEAN mRNA 152821 152867 0.996496 - . ID=CGI_10012077; scaffold1492 TRF Tandem_Repeat 152821 152867 87 + . . scaffold1492 GLEAN mRNA 158262 158307 0.996496 - . ID=CGI_10012077; scaffold1492 TRF Tandem_Repeat 158262 158307 83 + . . scaffold1492 GLEAN mRNA 176354 176402 0.815977 + . ID=CGI_10012081; scaffold1492 TRF Tandem_Repeat 176354 176402 50 + . . scaffold1492 GLEAN mRNA 182035 182108 0.815977 + . ID=CGI_10012081; scaffold1492 TRF Tandem_Repeat 182035 182108 148 + . . scaffold1492 GLEAN mRNA 184231 187454 0.815977 + . ID=CGI_10012081; scaffold1492 TRF Tandem_Repeat 184231 187454 6448 + . . scaffold1492 GLEAN mRNA 189375 189419 0.815977 + . ID=CGI_10012081; scaffold1492 TRF Tandem_Repeat 189375 189419 72 + . . scaffold1492 GLEAN mRNA 238649 238739 0.558395 + . ID=CGI_10012083; scaffold1492 TRF Tandem_Repeat 238649 238739 101 + . . scaffold1492 GLEAN mRNA 267666 267710 1 - . ID=CGI_10012085; scaffold1492 TRF Tandem_Repeat 267666 267710 90 + . . scaffold1492 GLEAN mRNA 273030 273080 1 - . ID=CGI_10012085; scaffold1492 TRF Tandem_Repeat 273030 273080 102 + . . scaffold1492 GLEAN mRNA 273078 273103 1 - . ID=CGI_10012085; scaffold1492 TRF Tandem_Repeat 273078 273103 52 + . . scaffold1492 GLEAN mRNA 273359 273405 1 - . ID=CGI_10012085; scaffold1492 TRF Tandem_Repeat 273359 273405 76 + . . scaffold1195 GLEAN mRNA 23869 23902 1 - . ID=CGI_10012091; scaffold1195 TRF Tandem_Repeat 23869 23902 68 + . . scaffold1195 GLEAN mRNA 23943 23988 1 - . ID=CGI_10012091; scaffold1195 TRF Tandem_Repeat 23943 23988 92 + . . scaffold1195 GLEAN mRNA 28686 28728 0.999351 + . ID=CGI_10012092; scaffold1195 TRF Tandem_Repeat 28686 28728 68 + . . scaffold1195 GLEAN mRNA 35779 35814 0.999351 + . ID=CGI_10012092; scaffold1195 TRF Tandem_Repeat 35779 35814 72 + . . scaffold1195 GLEAN mRNA 54612 54661 0.996429 + . ID=CGI_10012094; scaffold1195 TRF Tandem_Repeat 54612 54661 57 + . . scaffold1195 GLEAN mRNA 59050 59223 0.996429 + . ID=CGI_10012094; scaffold1195 WUBlastX DNA_Zator 59050 59223 54 + . . scaffold1195 GLEAN mRNA 59486 59539 0.996429 + . ID=CGI_10012094; scaffold1195 WUBlastX DNA_Zator 59486 59539 29 + . . scaffold1195 GLEAN mRNA 71367 71448 0.593241 - . ID=CGI_10012095; scaffold1195 TRF Tandem_Repeat 71367 71448 86 + . . scaffold1195 GLEAN mRNA 76751 76882 0.836486 + . ID=CGI_10012096; scaffold1195 TRF Tandem_Repeat 76751 76882 168 + . . scaffold1195 GLEAN mRNA 76751 76854 0.836486 + . ID=CGI_10012096; scaffold1195 TRF Tandem_Repeat 76751 76854 187 + . . scaffold1195 GLEAN mRNA 76751 76876 0.836486 + . ID=CGI_10012096; scaffold1195 TRF Tandem_Repeat 76751 76876 96 + . . scaffold1195 GLEAN mRNA 137178 137274 0.840019 + . ID=CGI_10012098; scaffold1195 TRF Tandem_Repeat 137178 137274 151 + . . scaffold1195 GLEAN mRNA 254802 255111 0.232392 - . ID=CGI_10012100; scaffold1195 TRF Tandem_Repeat 254802 255111 333 + . . scaffold1195 GLEAN mRNA 260101 260138 0.232392 - . ID=CGI_10012100; scaffold1195 TRF Tandem_Repeat 260101 260138 58 + . . scaffold1195 GLEAN mRNA 290513 290848 0.541928 - . ID=CGI_10012102; scaffold1195 WUBlastX LINE_L1 290513 290848 76 - . . scaffold1195 GLEAN mRNA 290501 291139 0.541928 - . ID=CGI_10012102; scaffold1195 WUBlastX LINE_L2 290501 291139 46 - . . scaffold43742 GLEAN mRNA 9410 9486 0.75969 + . ID=CGI_10012103; scaffold43742 TRF Tandem_Repeat 9410 9486 98 + . . scaffold43742 GLEAN mRNA 9412 9486 0.75969 + . ID=CGI_10012103; scaffold43742 TRF Tandem_Repeat 9412 9486 113 + . . scaffold43742 GLEAN mRNA 14181 14248 0.75969 + . ID=CGI_10012103; scaffold43742 TRF Tandem_Repeat 14181 14248 57 + . . scaffold43742 GLEAN mRNA 14282 14365 0.75969 + . ID=CGI_10012103; scaffold43742 TRF Tandem_Repeat 14282 14365 80 + . . scaffold43742 GLEAN mRNA 70795 71242 0.278819 - . ID=CGI_10012107; scaffold43742 TRF Tandem_Repeat 70795 71242 824 + . . scaffold43742 GLEAN mRNA 107971 108718 0.278819 - . ID=CGI_10012107; scaffold43742 TRF Tandem_Repeat 107971 108718 842 + . . scaffold43742 GLEAN mRNA 121037 121081 0.278819 - . ID=CGI_10012107; scaffold43742 TRF Tandem_Repeat 121037 121081 51 + . . scaffold43742 GLEAN mRNA 130662 130930 0.278819 - . ID=CGI_10012107; scaffold43742 TRF Tandem_Repeat 130662 130930 198 + . . scaffold43742 GLEAN mRNA 130682 130919 0.278819 - . ID=CGI_10012107; scaffold43742 TRF Tandem_Repeat 130682 130919 206 + . . scaffold43742 GLEAN mRNA 130652 130901 0.278819 - . ID=CGI_10012107; scaffold43742 TRF Tandem_Repeat 130652 130901 339 + . . scaffold43742 GLEAN mRNA 130652 130930 0.278819 - . ID=CGI_10012107; scaffold43742 TRF Tandem_Repeat 130652 130930 319 + . . scaffold43742 GLEAN mRNA 130652 130895 0.278819 - . ID=CGI_10012107; scaffold43742 TRF Tandem_Repeat 130652 130895 173 + . . scaffold43742 GLEAN mRNA 137987 138044 1 - . ID=CGI_10012109; scaffold43742 TRF Tandem_Repeat 137987 138044 107 + . . scaffold43742 GLEAN mRNA 147850 147906 0.861148 - . ID=CGI_10012110; scaffold43742 TRF Tandem_Repeat 147850 147906 114 + . . scaffold43742 GLEAN mRNA 151518 151574 0.861148 - . ID=CGI_10012110; scaffold43742 TRF Tandem_Repeat 151518 151574 114 + . . scaffold43742 GLEAN mRNA 208591 209005 0.351278 + . ID=CGI_10012113; scaffold43742 TRF Tandem_Repeat 208591 209005 668 + . . scaffold43742 GLEAN mRNA 208899 208996 0.351278 + . ID=CGI_10012113; scaffold43742 TRF Tandem_Repeat 208899 208996 55 + . . scaffold43742 GLEAN mRNA 209539 209567 0.351278 + . ID=CGI_10012113; scaffold43742 TRF Tandem_Repeat 209539 209567 51 + . . scaffold43742 GLEAN mRNA 211624 211666 0.351278 + . ID=CGI_10012113; scaffold43742 TRF Tandem_Repeat 211624 211666 86 + . . scaffold43742 GLEAN mRNA 261237 261277 0.706246 + . ID=CGI_10012118; scaffold43742 TRF Tandem_Repeat 261237 261277 64 + . . scaffold43742 GLEAN mRNA 267091 267456 0.706246 + . ID=CGI_10012118; scaffold43742 TRF Tandem_Repeat 267091 267456 437 + . . scaffold43742 GLEAN mRNA 267091 267456 0.706246 + . ID=CGI_10012118; scaffold43742 TRF Tandem_Repeat 267091 267456 484 + . . scaffold43742 GLEAN mRNA 268262 268617 0.706246 + . ID=CGI_10012118; scaffold43742 TRF Tandem_Repeat 268262 268617 263 + . . scaffold1890 GLEAN mRNA 38265 38300 0.921078 - . ID=CGI_10012121; scaffold1890 TRF Tandem_Repeat 38265 38300 72 + . . scaffold1890 GLEAN mRNA 38300 38346 0.921078 - . ID=CGI_10012121; scaffold1890 TRF Tandem_Repeat 38300 38346 67 + . . scaffold1890 GLEAN mRNA 41170 41229 0.921078 - . ID=CGI_10012121; scaffold1890 TRF Tandem_Repeat 41170 41229 120 + . . scaffold1890 GLEAN mRNA 48995 49059 0.593391 - . ID=CGI_10012122; scaffold1890 TRF Tandem_Repeat 48995 49059 130 + . . scaffold1890 GLEAN mRNA 112265 112492 0.999174 - . ID=CGI_10012126; scaffold1890 TRF Tandem_Repeat 112265 112492 375 + . . scaffold1890 GLEAN mRNA 154129 154521 0.344946 - . ID=CGI_10012129; scaffold1890 TRF Tandem_Repeat 154129 154521 299 + . . scaffold1890 GLEAN mRNA 176707 176942 0.344946 - . ID=CGI_10012129; scaffold1890 TRF Tandem_Repeat 176707 176942 286 + . . scaffold1890 GLEAN mRNA 177930 178135 0.344946 - . ID=CGI_10012129; scaffold1890 TRF Tandem_Repeat 177930 178135 162 + . . scaffold1890 GLEAN mRNA 177977 178166 0.344946 - . ID=CGI_10012129; scaffold1890 TRF Tandem_Repeat 177977 178166 308 + . . scaffold1890 GLEAN mRNA 179323 179530 0.344946 - . ID=CGI_10012129; scaffold1890 TRF Tandem_Repeat 179323 179530 253 + . . scaffold1890 GLEAN mRNA 184259 184672 0.344946 - . ID=CGI_10012129; scaffold1890 TRF Tandem_Repeat 184259 184672 398 + . . scaffold1890 GLEAN mRNA 203052 203111 0.344946 - . ID=CGI_10012129; scaffold1890 TRF Tandem_Repeat 203052 203111 120 + . . scaffold1890 GLEAN mRNA 216020 216057 0.344946 - . ID=CGI_10012129; scaffold1890 TRF Tandem_Repeat 216020 216057 76 + . . scaffold1890 GLEAN mRNA 218116 218536 0.344946 - . ID=CGI_10012129; scaffold1890 TRF Tandem_Repeat 218116 218536 797 + . . scaffold1890 GLEAN mRNA 196539 196837 0.344946 - . ID=CGI_10012129; scaffold1890 TRF Tandem_Repeat 196539 196837 467 + . . scaffold1890 GLEAN mRNA 259894 259919 0.992025 - . ID=CGI_10012132; scaffold1890 TRF Tandem_Repeat 259894 259919 52 + . . scaffold1890 GLEAN mRNA 269047 269217 0.992025 - . ID=CGI_10012132; scaffold1890 TRF Tandem_Repeat 269047 269217 199 + . . scaffold1890 GLEAN mRNA 270509 270739 0.992025 - . ID=CGI_10012132; scaffold1890 TRF Tandem_Repeat 270509 270739 183 + . . scaffold1890 GLEAN mRNA 282090 282131 0.999929 - . ID=CGI_10012133; scaffold1890 TRF Tandem_Repeat 282090 282131 52 + . . scaffold1890 GLEAN mRNA 283196 283248 0.934668 - . ID=CGI_10012134; scaffold1890 TRF Tandem_Repeat 283196 283248 63 + . . scaffold1890 GLEAN mRNA 292389 292525 0.999976 - . ID=CGI_10012135; scaffold1890 TRF Tandem_Repeat 292389 292525 229 + . . scaffold1890 GLEAN mRNA 292411 292551 0.999976 - . ID=CGI_10012135; scaffold1890 TRF Tandem_Repeat 292411 292551 138 + . . scaffold1890 GLEAN mRNA 299808 299843 0.999976 - . ID=CGI_10012135; scaffold1890 TRF Tandem_Repeat 299808 299843 72 + . . scaffold1890 GLEAN mRNA 302684 302726 0.999976 - . ID=CGI_10012135; scaffold1890 TRF Tandem_Repeat 302684 302726 77 + . . scaffold1890 GLEAN mRNA 305912 305972 0.999976 - . ID=CGI_10012135; scaffold1890 TRF Tandem_Repeat 305912 305972 51 + . . scaffold911 GLEAN mRNA 95931 96014 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 95931 96014 49 + . . scaffold911 GLEAN mRNA 95611 95775 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 95611 95775 72 + . . scaffold911 GLEAN mRNA 96982 97110 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 96982 97110 101 + . . scaffold911 GLEAN mRNA 95333 95608 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 95333 95608 47 + . . scaffold911 GLEAN mRNA 95487 95957 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 95487 95957 44 + . . scaffold911 GLEAN mRNA 96988 97161 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 96988 97161 86 + . . scaffold911 GLEAN mRNA 94523 94864 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 94523 94864 116 + . . scaffold911 GLEAN mRNA 95018 95302 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 95018 95302 42 + . . scaffold911 GLEAN mRNA 95647 95775 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 95647 95775 98 + . . scaffold911 GLEAN mRNA 96907 97101 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 96907 97101 57 + . . scaffold911 GLEAN mRNA 96985 97215 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 96985 97215 58 + . . scaffold911 GLEAN mRNA 95333 95464 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 95333 95464 61 + . . scaffold911 GLEAN mRNA 94369 94521 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 94369 94521 82 + . . scaffold911 GLEAN mRNA 95656 95802 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 95656 95802 78 + . . scaffold911 GLEAN mRNA 94523 94945 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 94523 94945 81 + . . scaffold911 GLEAN mRNA 98128 98241 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 98128 98241 28 + . . scaffold911 GLEAN mRNA 102989 104193 0.543807 - . ID=CGI_10012137; scaffold911 TRF Tandem_Repeat 102989 104193 1560 + . . scaffold911 GLEAN mRNA 104352 104389 0.543807 - . ID=CGI_10012137; scaffold911 TRF Tandem_Repeat 104352 104389 51 + . . scaffold911 GLEAN mRNA 107817 108155 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX DNA_hAT-Tip100 107817 108155 121 + . . scaffold911 GLEAN mRNA 108499 108651 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX DNA_hAT-Tip100 108499 108651 26 + . . scaffold911 GLEAN mRNA 108812 109015 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX DNA_hAT-Tip100 108812 109015 27 + . . scaffold911 GLEAN mRNA 108840 108911 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX DNA_hAT-Tip100 108840 108911 31 + . . scaffold911 GLEAN mRNA 107736 108155 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX DNA_hAT-Tip100 107736 108155 116 + . . scaffold911 GLEAN mRNA 98238 99245 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 98238 99245 280 + . . scaffold911 GLEAN mRNA 113744 113782 1 - . ID=CGI_10012138; scaffold911 WUBlastX DNA_Kolobok-Hyd 113744 113782 24 - . . scaffold911 GLEAN mRNA 114322 114456 1 - . ID=CGI_10012138; scaffold911 WUBlastX DNA_Kolobok-Hyd 114322 114456 21 - . . scaffold911 GLEAN mRNA 161758 162033 0.499121 + . ID=CGI_10012141; scaffold911 WUBlastX LINE_L1 161758 162033 20 - . . scaffold911 GLEAN mRNA 162390 162596 0.499121 + . ID=CGI_10012141; scaffold911 WUBlastX LINE_L1-Tx1 162390 162596 27 - . . scaffold911 GLEAN mRNA 168984 169013 0.499121 + . ID=CGI_10012141; scaffold911 TRF Tandem_Repeat 168984 169013 60 + . . scaffold911 GLEAN mRNA 168866 169216 0.499121 + . ID=CGI_10012141; scaffold911 WUBlastX DNA_En-Spm 168866 169216 64 + . . scaffold911 GLEAN mRNA 168791 169216 0.499121 + . ID=CGI_10012141; scaffold911 WUBlastX DNA_En-Spm 168791 169216 44 + . . scaffold911 GLEAN mRNA 162770 163987 0.499121 + . ID=CGI_10012141; scaffold911 WUBlastX LINE_L1 162770 163987 274 - . . scaffold911 GLEAN mRNA 266965 267023 0.99909 - . ID=CGI_10012144; scaffold911 TRF Tandem_Repeat 266965 267023 59 + . . scaffold911 GLEAN mRNA 275258 275310 1 + . ID=CGI_10012145; scaffold911 TRF Tandem_Repeat 275258 275310 106 + . . scaffold421 GLEAN mRNA 68304 68353 0.999996 + . ID=CGI_10012147; scaffold421 TRF Tandem_Repeat 68304 68353 68 + . . scaffold421 GLEAN mRNA 68399 69185 0.999996 + . ID=CGI_10012147; scaffold421 TRF Tandem_Repeat 68399 69185 969 + . . scaffold421 GLEAN mRNA 70137 70283 0.999996 + . ID=CGI_10012147; scaffold421 TRF Tandem_Repeat 70137 70283 73 + . . scaffold421 GLEAN mRNA 70199 70328 0.999996 + . ID=CGI_10012147; scaffold421 TRF Tandem_Repeat 70199 70328 93 + . . scaffold421 GLEAN mRNA 110082 110134 1 + . ID=CGI_10012151; scaffold421 TRF Tandem_Repeat 110082 110134 106 + . . scaffold421 GLEAN mRNA 111481 111521 1 + . ID=CGI_10012151; scaffold421 TRF Tandem_Repeat 111481 111521 82 + . . scaffold421 GLEAN mRNA 117778 117825 1 + . ID=CGI_10012151; scaffold421 TRF Tandem_Repeat 117778 117825 96 + . . scaffold421 GLEAN mRNA 174992 175471 0.999676 + . ID=CGI_10012155; scaffold421 WUBlastX LINE_L1-Tx1 174992 175471 28 - . . scaffold421 GLEAN mRNA 175220 175516 0.999676 + . ID=CGI_10012155; scaffold421 WUBlastX LINE_L1-Tx1 175220 175516 61 - . . scaffold421 GLEAN mRNA 175070 175471 0.999676 + . ID=CGI_10012155; scaffold421 WUBlastX LINE_L1-Tx1 175070 175471 126 - . . scaffold421 GLEAN mRNA 187304 187516 1 + . ID=CGI_10012156; scaffold421 WUBlastX LINE_RTE-X 187304 187516 61 + . . scaffold421 GLEAN mRNA 187283 187615 1 + . ID=CGI_10012156; scaffold421 WUBlastX LINE_RTE-X 187283 187615 20 + . . scaffold421 GLEAN mRNA 187358 187555 1 + . ID=CGI_10012156; scaffold421 WUBlastX LINE_RTE-X 187358 187555 31 + . . scaffold421 GLEAN mRNA 202382 202424 0.153338 + . ID=CGI_10012157; scaffold421 TRF Tandem_Repeat 202382 202424 86 + . . scaffold421 GLEAN mRNA 203537 203585 0.153338 + . ID=CGI_10012157; scaffold421 TRF Tandem_Repeat 203537 203585 62 + . . scaffold421 GLEAN mRNA 204608 204652 0.153338 + . ID=CGI_10012157; scaffold421 TRF Tandem_Repeat 204608 204652 72 + . . scaffold421 GLEAN mRNA 209135 209212 0.153338 + . ID=CGI_10012157; scaffold421 TRF Tandem_Repeat 209135 209212 140 + . . scaffold421 GLEAN mRNA 247413 247571 0.999281 - . ID=CGI_10012158; scaffold421 WUBlastX LINE_RTE-X 247413 247571 81 - . . scaffold421 GLEAN mRNA 247350 247667 0.999281 - . ID=CGI_10012158; scaffold421 WUBlastX LINE_RTE-X 247350 247667 52 - . . scaffold421 GLEAN mRNA 247404 247622 0.999281 - . ID=CGI_10012158; scaffold421 WUBlastX LINE_RTE-X 247404 247622 64 - . . scaffold421 GLEAN mRNA 247281 247571 0.999281 - . ID=CGI_10012158; scaffold421 WUBlastX LINE_RTE-X 247281 247571 48 - . . scaffold421 GLEAN mRNA 267422 267471 0.887893 + . ID=CGI_10012159; scaffold421 TRF Tandem_Repeat 267422 267471 73 + . . scaffold421 GLEAN mRNA 267831 267878 0.887893 + . ID=CGI_10012159; scaffold421 TRF Tandem_Repeat 267831 267878 96 + . . scaffold568 GLEAN mRNA 253407 253440 0.34541 - . ID=CGI_10012164; scaffold568 TRF Tandem_Repeat 253407 253440 68 + . . scaffold568 GLEAN mRNA 254994 255039 0.34541 - . ID=CGI_10012164; scaffold568 TRF Tandem_Repeat 254994 255039 83 + . . scaffold568 GLEAN mRNA 274862 274902 0.34541 - . ID=CGI_10012164; scaffold568 TRF Tandem_Repeat 274862 274902 82 + . . scaffold568 GLEAN mRNA 275307 275356 0.34541 - . ID=CGI_10012164; scaffold568 TRF Tandem_Repeat 275307 275356 100 + . . scaffold1571 GLEAN mRNA 109973 110020 0.562917 + . ID=CGI_10012168; scaffold1571 TRF Tandem_Repeat 109973 110020 96 + . . scaffold1571 GLEAN mRNA 110329 110365 0.562917 + . ID=CGI_10012168; scaffold1571 TRF Tandem_Repeat 110329 110365 74 + . . scaffold1571 GLEAN mRNA 117455 118657 0.562917 + . ID=CGI_10012168; scaffold1571 TRF Tandem_Repeat 117455 118657 1674 + . . scaffold1571 GLEAN mRNA 126262 126967 1 - . ID=CGI_10012169; scaffold1571 TRF Tandem_Repeat 126262 126967 1169 + . . scaffold1571 GLEAN mRNA 129613 129683 1 - . ID=CGI_10012169; scaffold1571 TRF Tandem_Repeat 129613 129683 70 + . . scaffold43764 GLEAN mRNA 56244 56752 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 56244 56752 532 + . . scaffold43764 GLEAN mRNA 56244 56752 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 56244 56752 501 + . . scaffold43764 GLEAN mRNA 58390 58577 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 58390 58577 178 + . . scaffold43764 GLEAN mRNA 58251 58579 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 58251 58579 326 + . . scaffold43764 GLEAN mRNA 58944 59430 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 58944 59430 582 + . . scaffold43764 GLEAN mRNA 58840 59438 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 58840 59438 558 + . . scaffold43764 GLEAN mRNA 61011 61251 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 61011 61251 312 + . . scaffold43764 GLEAN mRNA 61438 62070 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 61438 62070 842 + . . scaffold43764 GLEAN mRNA 64022 64356 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 64022 64356 330 + . . scaffold43764 GLEAN mRNA 64022 64330 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 64022 64330 513 + . . scaffold43764 GLEAN mRNA 73960 74042 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 73960 74042 148 + . . scaffold43764 GLEAN mRNA 74397 75187 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 74397 75187 907 + . . scaffold43764 GLEAN mRNA 82405 82832 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 82405 82832 743 + . . scaffold43764 GLEAN mRNA 83621 83868 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 83621 83868 432 + . . scaffold43764 GLEAN mRNA 101333 101645 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 101333 101645 478 + . . scaffold43764 GLEAN mRNA 101269 101684 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 101269 101684 411 + . . scaffold43764 GLEAN mRNA 102933 102983 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 102933 102983 93 + . . scaffold43764 GLEAN mRNA 117629 117666 1 - . ID=CGI_10012178; scaffold43764 TRF Tandem_Repeat 117629 117666 76 + . . scaffold43764 GLEAN mRNA 141178 141437 0.269979 - . ID=CGI_10012179; scaffold43764 TRF Tandem_Repeat 141178 141437 504 + . . scaffold43764 GLEAN mRNA 142567 142593 0.269979 - . ID=CGI_10012179; scaffold43764 TRF Tandem_Repeat 142567 142593 54 + . . scaffold43764 GLEAN mRNA 142637 142661 0.269979 - . ID=CGI_10012179; scaffold43764 TRF Tandem_Repeat 142637 142661 50 + . . scaffold43764 GLEAN mRNA 154277 154306 0.746109 - . ID=CGI_10012180; scaffold43764 TRF Tandem_Repeat 154277 154306 60 + . . scaffold43764 GLEAN mRNA 172661 172691 1 - . ID=CGI_10012181; scaffold43764 TRF Tandem_Repeat 172661 172691 62 + . . scaffold43764 GLEAN mRNA 182269 182338 1 - . ID=CGI_10012181; scaffold43764 TRF Tandem_Repeat 182269 182338 52 + . . scaffold43764 GLEAN mRNA 182266 182339 1 - . ID=CGI_10012181; scaffold43764 TRF Tandem_Repeat 182266 182339 86 + . . scaffold43764 GLEAN mRNA 182267 182328 1 - . ID=CGI_10012181; scaffold43764 TRF Tandem_Repeat 182267 182328 92 + . . scaffold43764 GLEAN mRNA 183965 184004 1 - . ID=CGI_10012181; scaffold43764 TRF Tandem_Repeat 183965 184004 71 + . . scaffold43764 GLEAN mRNA 208221 208267 0.9999 + . ID=CGI_10012182; scaffold43764 TRF Tandem_Repeat 208221 208267 94 + . . scaffold43764 GLEAN mRNA 217818 217870 0.879869 + . ID=CGI_10012183; scaffold43764 TRF Tandem_Repeat 217818 217870 106 + . . scaffold43764 GLEAN mRNA 217924 217959 0.879869 + . ID=CGI_10012183; scaffold43764 TRF Tandem_Repeat 217924 217959 63 + . . scaffold43764 GLEAN mRNA 238006 238052 0.879869 + . ID=CGI_10012183; scaffold43764 TRF Tandem_Repeat 238006 238052 94 + . . scaffold722 GLEAN mRNA 10328 10556 0.362649 - . ID=CGI_10012186; scaffold722 TRF Tandem_Repeat 10328 10556 280 + . . scaffold722 GLEAN mRNA 75460 75669 0.711195 + . ID=CGI_10012189; scaffold722 TRF Tandem_Repeat 75460 75669 259 + . . scaffold722 GLEAN mRNA 76081 76415 0.711195 + . ID=CGI_10012189; scaffold722 TRF Tandem_Repeat 76081 76415 424 + . . scaffold722 GLEAN mRNA 75969 76397 0.711195 + . ID=CGI_10012189; scaffold722 TRF Tandem_Repeat 75969 76397 309 + . . scaffold722 GLEAN mRNA 114350 114389 0.99428 - . ID=CGI_10012192; scaffold722 TRF Tandem_Repeat 114350 114389 80 + . . scaffold722 GLEAN mRNA 121287 121321 1 - . ID=CGI_10012193; scaffold722 TRF Tandem_Repeat 121287 121321 52 + . . scaffold722 GLEAN mRNA 206696 206862 0.999977 + . ID=CGI_10012200; scaffold722 TRF Tandem_Repeat 206696 206862 192 + . . scaffold722 GLEAN mRNA 220614 220775 0.920529 - . ID=CGI_10012201; scaffold722 TRF Tandem_Repeat 220614 220775 98 + . . scaffold722 GLEAN mRNA 230249 230296 0.920529 - . ID=CGI_10012201; scaffold722 TRF Tandem_Repeat 230249 230296 96 + . . scaffold722 GLEAN mRNA 236340 237532 0.920529 - . ID=CGI_10012201; scaffold722 TRF Tandem_Repeat 236340 237532 1306 + . . scaffold722 GLEAN mRNA 242682 242927 0.920529 - . ID=CGI_10012201; scaffold722 WUBlastX DNA_TcMar-Marin 242682 242927 70 - . . scaffold722 GLEAN mRNA 242449 242607 0.920529 - . ID=CGI_10012201; scaffold722 WUBlastX DNA_TcMar-Marin 242449 242607 44 - . . scaffold722 GLEAN mRNA 242506 242664 0.920529 - . ID=CGI_10012201; scaffold722 WUBlastX DNA_TcMar-Marin 242506 242664 73 - . . scaffold722 GLEAN mRNA 247724 247755 0.920529 - . ID=CGI_10012201; scaffold722 TRF Tandem_Repeat 247724 247755 64 + . . scaffold722 GLEAN mRNA 251318 251737 0.920529 - . ID=CGI_10012201; scaffold722 TRF Tandem_Repeat 251318 251737 312 + . . scaffold722 GLEAN mRNA 251359 251655 0.920529 - . ID=CGI_10012201; scaffold722 TRF Tandem_Repeat 251359 251655 300 + . . scaffold722 GLEAN mRNA 259383 259596 0.920529 - . ID=CGI_10012201; scaffold722 TRF Tandem_Repeat 259383 259596 171 + . . scaffold722 GLEAN mRNA 259607 259829 0.920529 - . ID=CGI_10012201; scaffold722 TRF Tandem_Repeat 259607 259829 182 + . . scaffold722 GLEAN mRNA 260093 260239 0.920529 - . ID=CGI_10012201; scaffold722 TRF Tandem_Repeat 260093 260239 188 + . . scaffold722 GLEAN mRNA 260093 260260 0.920529 - . ID=CGI_10012201; scaffold722 TRF Tandem_Repeat 260093 260260 174 + . . scaffold722 GLEAN mRNA 270378 270563 0.920529 - . ID=CGI_10012201; scaffold722 TRF Tandem_Repeat 270378 270563 112 + . . scaffold722 GLEAN mRNA 281619 281680 0.934305 - . ID=CGI_10012202; scaffold722 TRF Tandem_Repeat 281619 281680 124 + . . scaffold1898 GLEAN mRNA 26045 26084 0.999667 - . ID=CGI_10012204; scaffold1898 TRF Tandem_Repeat 26045 26084 80 + . . scaffold1898 GLEAN mRNA 26212 26257 0.999667 - . ID=CGI_10012204; scaffold1898 TRF Tandem_Repeat 26212 26257 92 + . . scaffold1898 GLEAN mRNA 27095 27321 0.999667 - . ID=CGI_10012204; scaffold1898 TRF Tandem_Repeat 27095 27321 400 + . . scaffold1898 GLEAN mRNA 31474 31553 0.999667 - . ID=CGI_10012204; scaffold1898 TRF Tandem_Repeat 31474 31553 151 + . . scaffold1898 GLEAN mRNA 53180 53332 1 + . ID=CGI_10012206; scaffold1898 WUBlastX DNA_hAT-Ac 53180 53332 49 - . . scaffold1898 GLEAN mRNA 58849 59052 0.544574 - . ID=CGI_10012207; scaffold1898 TRF Tandem_Repeat 58849 59052 237 + . . scaffold1898 GLEAN mRNA 53180 53332 0.544574 - . ID=CGI_10012207; scaffold1898 WUBlastX DNA_hAT-Ac 53180 53332 49 - . . scaffold1898 GLEAN mRNA 292021 292050 0.999364 - . ID=CGI_10012219; scaffold1898 TRF Tandem_Repeat 292021 292050 51 + . . scaffold1898 GLEAN mRNA 308370 308408 0.889712 + . ID=CGI_10012220; scaffold1898 TRF Tandem_Repeat 308370 308408 78 + . . scaffold1898 GLEAN mRNA 309203 309916 0.889712 + . ID=CGI_10012220; scaffold1898 WUBlastX LTR_Pao 309203 309916 673 - . . scaffold1898 GLEAN mRNA 309913 310449 0.889712 + . ID=CGI_10012220; scaffold1898 WUBlastX LTR_Pao 309913 310449 247 - . . scaffold1898 GLEAN mRNA 310641 310742 0.889712 + . ID=CGI_10012220; scaffold1898 WUBlastX LTR_Pao 310641 310742 35 - . . scaffold1898 GLEAN mRNA 310587 310769 0.889712 + . ID=CGI_10012220; scaffold1898 WUBlastX LTR_Pao 310587 310769 21 - . . scaffold1898 GLEAN mRNA 311637 312104 0.889712 + . ID=CGI_10012220; scaffold1898 WUBlastX LTR_Pao 311637 312104 135 - . . scaffold1898 GLEAN mRNA 312140 312553 0.889712 + . ID=CGI_10012220; scaffold1898 WUBlastX LTR_Pao 312140 312553 100 - . . scaffold1898 GLEAN mRNA 311712 312143 0.889712 + . ID=CGI_10012220; scaffold1898 WUBlastX LTR_Pao 311712 312143 379 - . . scaffold1898 GLEAN mRNA 311606 311746 0.889712 + . ID=CGI_10012220; scaffold1898 WUBlastX LTR_Pao 311606 311746 127 - . . scaffold1898 GLEAN mRNA 312140 312454 0.889712 + . ID=CGI_10012220; scaffold1898 WUBlastX LTR_Pao 312140 312454 173 - . . scaffold1898 GLEAN mRNA 310744 311604 0.889712 + . ID=CGI_10012220; scaffold1898 WUBlastX LTR_Pao 310744 311604 663 - . . scaffold190 GLEAN mRNA 13416 13482 0.997665 + . ID=CGI_10012223; scaffold190 TRF Tandem_Repeat 13416 13482 98 + . . scaffold190 GLEAN mRNA 22950 23386 0.996279 - . ID=CGI_10012224; scaffold190 TRF Tandem_Repeat 22950 23386 618 + . . scaffold190 GLEAN mRNA 22899 23404 0.996279 - . ID=CGI_10012224; scaffold190 TRF Tandem_Repeat 22899 23404 271 + . . scaffold190 GLEAN mRNA 26403 26445 0.996279 - . ID=CGI_10012224; scaffold190 TRF Tandem_Repeat 26403 26445 86 + . . scaffold190 GLEAN mRNA 27858 28123 0.996279 - . ID=CGI_10012224; scaffold190 TRF Tandem_Repeat 27858 28123 156 + . . scaffold190 GLEAN mRNA 27855 28123 0.996279 - . ID=CGI_10012224; scaffold190 TRF Tandem_Repeat 27855 28123 256 + . . scaffold190 GLEAN mRNA 37186 37220 1 - . ID=CGI_10012225; scaffold190 TRF Tandem_Repeat 37186 37220 70 + . . scaffold190 GLEAN mRNA 73200 73255 0.9852 + . ID=CGI_10012229; scaffold190 TRF Tandem_Repeat 73200 73255 112 + . . scaffold190 GLEAN mRNA 101051 101092 0.999238 - . ID=CGI_10012231; scaffold190 TRF Tandem_Repeat 101051 101092 84 + . . scaffold190 GLEAN mRNA 224160 224332 0.279541 + . ID=CGI_10012236; scaffold190 TRF Tandem_Repeat 224160 224332 134 + . . scaffold190 GLEAN mRNA 240116 240249 0.279541 + . ID=CGI_10012236; scaffold190 TRF Tandem_Repeat 240116 240249 241 + . . scaffold190 GLEAN mRNA 252619 252657 0.999949 + . ID=CGI_10012237; scaffold190 TRF Tandem_Repeat 252619 252657 51 + . . scaffold190 GLEAN mRNA 252795 253107 0.999949 + . ID=CGI_10012237; scaffold190 TRF Tandem_Repeat 252795 253107 549 + . . scaffold190 GLEAN mRNA 254288 254417 0.999949 + . ID=CGI_10012237; scaffold190 TRF Tandem_Repeat 254288 254417 109 + . . scaffold190 GLEAN mRNA 254834 255024 0.999949 + . ID=CGI_10012237; scaffold190 TRF Tandem_Repeat 254834 255024 303 + . . scaffold190 GLEAN mRNA 255178 255582 0.999949 + . ID=CGI_10012237; scaffold190 TRF Tandem_Repeat 255178 255582 568 + . . scaffold190 GLEAN mRNA 273051 273108 0.088329 + . ID=CGI_10012239; scaffold190 TRF Tandem_Repeat 273051 273108 98 + . . scaffold352 GLEAN mRNA 10247 10426 0.738574 - . ID=CGI_10012242; scaffold352 WUBlastX DNA_Harbinger 10247 10426 49 - . . scaffold352 GLEAN mRNA 77583 78339 0.972718 + . ID=CGI_10012244; scaffold352 TRF Tandem_Repeat 77583 78339 411 + . . scaffold352 GLEAN mRNA 77583 78339 0.972718 + . ID=CGI_10012244; scaffold352 TRF Tandem_Repeat 77583 78339 496 + . . scaffold352 GLEAN mRNA 73732 74475 0.972718 + . ID=CGI_10012244; scaffold352 WUBlastX DNA_TcMar-Marin 73732 74475 36 - . . scaffold352 GLEAN mRNA 73649 73732 0.972718 + . ID=CGI_10012244; scaffold352 WUBlastX DNA_TcMar-Marin 73649 73732 34 - . . scaffold352 GLEAN mRNA 73726 74361 0.972718 + . ID=CGI_10012244; scaffold352 WUBlastX DNA_TcMar-Marin 73726 74361 123 - . . scaffold352 GLEAN mRNA 98211 98273 0.829619 + . ID=CGI_10012246; scaffold352 TRF Tandem_Repeat 98211 98273 108 + . . scaffold352 GLEAN mRNA 153611 154693 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LTR_Pao 153611 154693 22 - . . scaffold352 GLEAN mRNA 156778 156879 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LINE_CR1-L2 156778 156879 34 - . . scaffold352 GLEAN mRNA 156766 156888 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LINE_CR1-L2 156766 156888 23 - . . scaffold352 GLEAN mRNA 157774 157926 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LINE_CR1-L2 157774 157926 61 - . . scaffold352 GLEAN mRNA 153195 153515 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LTR_Gypsy 153195 153515 71 - . . scaffold352 GLEAN mRNA 149860 151227 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LTR_Gypsy-Cigr 149860 151227 781 - . . scaffold352 GLEAN mRNA 149833 149985 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LTR_Copia 149833 149985 21 - . . scaffold352 GLEAN mRNA 153662 154309 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LTR_Gypsy 153662 154309 136 - . . scaffold352 GLEAN mRNA 153518 153796 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LTR_Gypsy 153518 153796 27 - . . scaffold352 GLEAN mRNA 153836 154333 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LTR_Gypsy-Cigr 153836 154333 189 - . . scaffold352 GLEAN mRNA 153599 154411 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LTR_Gypsy 153599 154411 69 - . . scaffold352 GLEAN mRNA 151374 153461 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LTR_Gypsy-Cigr 151374 153461 1279 - . . scaffold352 GLEAN mRNA 157738 157890 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LINE_CR1-L2 157738 157890 42 - . . scaffold352 GLEAN mRNA 151332 153071 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LTR_Gypsy-Cigr 151332 153071 1327 - . . scaffold352 GLEAN mRNA 150930 152837 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LTR_Gypsy 150930 152837 867 - . . scaffold352 GLEAN mRNA 167542 167583 0.508288 - . ID=CGI_10012248; scaffold352 TRF Tandem_Repeat 167542 167583 84 + . . scaffold352 GLEAN mRNA 172503 172658 0.508288 - . ID=CGI_10012248; scaffold352 TRF Tandem_Repeat 172503 172658 81 + . . scaffold352 GLEAN mRNA 172503 172701 0.508288 - . ID=CGI_10012248; scaffold352 TRF Tandem_Repeat 172503 172701 240 + . . scaffold352 GLEAN mRNA 172503 172732 0.508288 - . ID=CGI_10012248; scaffold352 TRF Tandem_Repeat 172503 172732 234 + . . scaffold352 GLEAN mRNA 173445 173494 0.508288 - . ID=CGI_10012248; scaffold352 TRF Tandem_Repeat 173445 173494 100 + . . scaffold352 GLEAN mRNA 174417 174496 0.508288 - . ID=CGI_10012248; scaffold352 TRF Tandem_Repeat 174417 174496 144 + . . scaffold352 GLEAN mRNA 174528 174554 0.508288 - . ID=CGI_10012248; scaffold352 TRF Tandem_Repeat 174528 174554 54 + . . scaffold352 GLEAN mRNA 176939 176977 0.508288 - . ID=CGI_10012248; scaffold352 TRF Tandem_Repeat 176939 176977 62 + . . scaffold352 GLEAN mRNA 177272 177526 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LINE_Penelope 177272 177526 55 - . . scaffold352 GLEAN mRNA 218540 218654 0.998998 - . ID=CGI_10012250; scaffold352 TRF Tandem_Repeat 218540 218654 90 + . . scaffold352 GLEAN mRNA 218520 218699 0.998998 - . ID=CGI_10012250; scaffold352 TRF Tandem_Repeat 218520 218699 125 + . . scaffold352 GLEAN mRNA 310119 310352 1 + . ID=CGI_10012251; scaffold352 WUBlastX DNA_PiggyBac 310119 310352 35 + . . scaffold352 GLEAN mRNA 313719 313743 1 + . ID=CGI_10012251; scaffold352 TRF Tandem_Repeat 313719 313743 50 + . . scaffold352 GLEAN mRNA 316148 316194 1 + . ID=CGI_10012251; scaffold352 TRF Tandem_Repeat 316148 316194 85 + . . scaffold352 GLEAN mRNA 318846 318890 1 + . ID=CGI_10012251; scaffold352 TRF Tandem_Repeat 318846 318890 90 + . . scaffold352 GLEAN mRNA 311542 311691 1 + . ID=CGI_10012251; scaffold352 WUBlastX DNA_PiggyBac 311542 311691 43 + . . scaffold352 GLEAN mRNA 312283 312783 1 + . ID=CGI_10012251; scaffold352 WUBlastX DNA_PiggyBac 312283 312783 306 + . . scaffold352 GLEAN mRNA 312286 312924 1 + . ID=CGI_10012251; scaffold352 WUBlastX DNA_PiggyBac 312286 312924 154 + . . scaffold352 GLEAN mRNA 311545 311724 1 + . ID=CGI_10012251; scaffold352 WUBlastX DNA_PiggyBac 311545 311724 32 + . . scaffold352 GLEAN mRNA 312940 313056 1 + . ID=CGI_10012251; scaffold352 WUBlastX DNA_PiggyBac 312940 313056 40 + . . scaffold1730 GLEAN mRNA 7553 7600 0.950383 + . ID=CGI_10012252; scaffold1730 TRF Tandem_Repeat 7553 7600 96 + . . scaffold1730 GLEAN mRNA 115633 115959 0.494862 - . ID=CGI_10012254; scaffold1730 WUBlastX DNA_Maverick 115633 115959 64 + . . scaffold1730 GLEAN mRNA 115876 116022 0.494862 - . ID=CGI_10012254; scaffold1730 WUBlastX DNA_Maverick 115876 116022 23 + . . scaffold1730 GLEAN mRNA 129544 130173 0.888729 - . ID=CGI_10012255; scaffold1730 WUBlastX DNA_IS4EU 129544 130173 60 - . . scaffold1730 GLEAN mRNA 129176 129301 0.888729 - . ID=CGI_10012255; scaffold1730 WUBlastX DNA_IS4EU 129176 129301 36 - . . scaffold1730 GLEAN mRNA 135196 135260 0.888729 - . ID=CGI_10012255; scaffold1730 TRF Tandem_Repeat 135196 135260 98 + . . scaffold1730 GLEAN mRNA 135359 135390 0.888729 - . ID=CGI_10012255; scaffold1730 TRF Tandem_Repeat 135359 135390 64 + . . scaffold1730 GLEAN mRNA 134056 134436 0.888729 - . ID=CGI_10012255; scaffold1730 WUBlastX DNA_Maverick 134056 134436 285 + . . scaffold1730 GLEAN mRNA 153771 153822 0.999676 - . ID=CGI_10012257; scaffold1730 TRF Tandem_Repeat 153771 153822 86 + . . scaffold1730 GLEAN mRNA 155286 155321 0.999676 - . ID=CGI_10012257; scaffold1730 TRF Tandem_Repeat 155286 155321 72 + . . scaffold1730 GLEAN mRNA 155477 155564 0.999676 - . ID=CGI_10012257; scaffold1730 TRF Tandem_Repeat 155477 155564 176 + . . scaffold1730 GLEAN mRNA 196819 197097 0.999676 + . ID=CGI_10012260; scaffold1730 WUBlastX LTR_Gypsy 196819 197097 79 + . . scaffold1730 GLEAN mRNA 196825 196959 0.999676 + . ID=CGI_10012260; scaffold1730 WUBlastX LTR_Gypsy-Cigr 196825 196959 97 + . . scaffold43772 GLEAN mRNA 120123 120165 0.889922 - . ID=CGI_10012273; scaffold43772 TRF Tandem_Repeat 120123 120165 86 + . . scaffold43772 GLEAN mRNA 125989 126046 0.999999 - . ID=CGI_10012274; scaffold43772 TRF Tandem_Repeat 125989 126046 116 + . . scaffold43772 GLEAN mRNA 185370 185395 0.332661 + . ID=CGI_10012276; scaffold43772 TRF Tandem_Repeat 185370 185395 52 + . . scaffold43772 GLEAN mRNA 208016 208070 0.332661 + . ID=CGI_10012276; scaffold43772 TRF Tandem_Repeat 208016 208070 60 + . . scaffold43772 GLEAN mRNA 231657 231713 0.999855 - . ID=CGI_10012278; scaffold43772 TRF Tandem_Repeat 231657 231713 114 + . . scaffold43772 GLEAN mRNA 233057 233101 0.999855 - . ID=CGI_10012278; scaffold43772 TRF Tandem_Repeat 233057 233101 90 + . . scaffold1366 GLEAN mRNA 13333 13586 0.873566 - . ID=CGI_10012280; scaffold1366 TRF Tandem_Repeat 13333 13586 355 + . . scaffold1366 GLEAN mRNA 31524 31955 0.743724 + . ID=CGI_10012283; scaffold1366 WUBlastX LTR_Gypsy 31524 32135 53 + . . scaffold1366 GLEAN mRNA 31635 31955 0.743724 + . ID=CGI_10012283; scaffold1366 WUBlastX LTR_Gypsy 31635 32252 50 + . . scaffold1366 GLEAN mRNA 46332 46388 0.995905 - . ID=CGI_10012284; scaffold1366 TRF Tandem_Repeat 46332 46388 114 + . . scaffold1366 GLEAN mRNA 48053 48329 0.995905 - . ID=CGI_10012284; scaffold1366 TRF Tandem_Repeat 48053 48329 314 + . . scaffold1366 GLEAN mRNA 48339 48879 0.995905 - . ID=CGI_10012284; scaffold1366 TRF Tandem_Repeat 48339 48879 645 + . . scaffold1366 GLEAN mRNA 49327 50908 0.995905 - . ID=CGI_10012284; scaffold1366 TRF Tandem_Repeat 49327 50908 2239 + . . scaffold1366 GLEAN mRNA 49041 49317 0.995905 - . ID=CGI_10012284; scaffold1366 TRF Tandem_Repeat 49041 49317 314 + . . scaffold1366 GLEAN mRNA 67347 67382 0.499838 + . ID=CGI_10012287; scaffold1366 TRF Tandem_Repeat 67347 67382 54 + . . scaffold1366 GLEAN mRNA 67610 67650 0.499838 + . ID=CGI_10012287; scaffold1366 TRF Tandem_Repeat 67610 67650 55 + . . scaffold1366 GLEAN mRNA 67607 67662 0.499838 + . ID=CGI_10012287; scaffold1366 TRF Tandem_Repeat 67607 67662 67 + . . scaffold1366 GLEAN mRNA 67607 67662 0.499838 + . ID=CGI_10012287; scaffold1366 TRF Tandem_Repeat 67607 67662 96 + . . scaffold1366 GLEAN mRNA 82838 83355 0.999999 + . ID=CGI_10012289; scaffold1366 TRF Tandem_Repeat 82838 83355 778 + . . scaffold1366 GLEAN mRNA 87911 87998 0.999624 - . ID=CGI_10012290; scaffold1366 TRF Tandem_Repeat 87911 87998 115 + . . scaffold1366 GLEAN mRNA 109453 109809 0.999351 + . ID=CGI_10012291; scaffold1366 WUBlastX LINE_RTE-BovB 109453 109809 39 - . . scaffold1366 GLEAN mRNA 115373 115446 0.999351 + . ID=CGI_10012291; scaffold1366 TRF Tandem_Repeat 115373 115446 134 + . . scaffold1366 GLEAN mRNA 118519 118885 0.999351 + . ID=CGI_10012291; scaffold1366 TRF Tandem_Repeat 118519 118885 322 + . . scaffold1366 GLEAN mRNA 137450 137752 0.999572 - . ID=CGI_10012293; scaffold1366 WUBlastX LINE_RTE-X 137450 137752 29 - . . scaffold1366 GLEAN mRNA 137558 137770 0.999572 - . ID=CGI_10012293; scaffold1366 WUBlastX LINE_RTE-X 137558 137770 68 - . . scaffold1366 GLEAN mRNA 174417 174445 0.942246 + . ID=CGI_10012296; scaffold1366 TRF Tandem_Repeat 174417 174445 58 + . . scaffold1366 GLEAN mRNA 163988 164344 0.942246 + . ID=CGI_10012296; scaffold1366 WUBlastX DNA_Crypton 163988 164344 122 - . . scaffold1366 GLEAN mRNA 163773 163982 0.942246 + . ID=CGI_10012296; scaffold1366 WUBlastX DNA_Crypton 163773 163982 46 - . . scaffold1366 GLEAN mRNA 179619 180276 1 - . ID=CGI_10012297; scaffold1366 TRF Tandem_Repeat 179619 180276 432 + . . scaffold1366 GLEAN mRNA 179732 180261 1 - . ID=CGI_10012297; scaffold1366 TRF Tandem_Repeat 179732 180261 351 + . . scaffold1366 GLEAN mRNA 179977 180269 1 - . ID=CGI_10012297; scaffold1366 TRF Tandem_Repeat 179977 180269 320 + . . scaffold1366 GLEAN mRNA 197388 197435 0.734544 - . ID=CGI_10012298; scaffold1366 TRF Tandem_Repeat 197388 197435 51 + . . scaffold1366 GLEAN mRNA 231286 231337 0.999879 - . ID=CGI_10012303; scaffold1366 TRF Tandem_Repeat 231286 231337 104 + . . scaffold1366 GLEAN mRNA 252807 252832 0.937316 - . ID=CGI_10012304; scaffold1366 TRF Tandem_Repeat 252807 252832 52 + . . scaffold1366 GLEAN mRNA 255055 255447 0.937316 - . ID=CGI_10012304; scaffold1366 TRF Tandem_Repeat 255055 255447 535 + . . scaffold477 GLEAN mRNA 18711 19060 0.994642 + . ID=CGI_10012307; scaffold477 TRF Tandem_Repeat 18711 19060 470 + . . scaffold477 GLEAN mRNA 33375 33410 0.999672 + . ID=CGI_10012308; scaffold477 TRF Tandem_Repeat 33375 33410 54 + . . scaffold477 GLEAN mRNA 33414 33466 0.999672 + . ID=CGI_10012308; scaffold477 TRF Tandem_Repeat 33414 33466 81 + . . scaffold477 GLEAN mRNA 57792 57946 0.855741 + . ID=CGI_10012309; scaffold477 TRF Tandem_Repeat 57792 57946 111 + . . scaffold477 GLEAN mRNA 57771 57946 0.855741 + . ID=CGI_10012309; scaffold477 TRF Tandem_Repeat 57771 57946 230 + . . scaffold477 GLEAN mRNA 50767 50979 0.855741 + . ID=CGI_10012309; scaffold477 WUBlastX LINE_RTE-X 50767 50979 103 - . . scaffold477 GLEAN mRNA 50770 51054 0.855741 + . ID=CGI_10012309; scaffold477 WUBlastX LINE_RTE-X 50770 51054 71 - . . scaffold477 GLEAN mRNA 94475 94611 1 - . ID=CGI_10012310; scaffold477 TRF Tandem_Repeat 94475 94611 173 + . . scaffold477 GLEAN mRNA 100390 100436 0.780447 + . ID=CGI_10012311; scaffold477 TRF Tandem_Repeat 100390 100436 94 + . . scaffold477 GLEAN mRNA 172207 172500 1 - . ID=CGI_10012313; scaffold477 TRF Tandem_Repeat 172207 172500 378 + . . scaffold477 GLEAN mRNA 172207 172497 1 - . ID=CGI_10012313; scaffold477 TRF Tandem_Repeat 172207 172497 311 + . . scaffold477 GLEAN mRNA 172207 172500 1 - . ID=CGI_10012313; scaffold477 TRF Tandem_Repeat 172207 172500 320 + . . scaffold477 GLEAN mRNA 198029 198242 0.811187 - . ID=CGI_10012317; scaffold477 TRF Tandem_Repeat 198029 198242 338 + . . scaffold477 GLEAN mRNA 198029 198283 0.811187 - . ID=CGI_10012317; scaffold477 TRF Tandem_Repeat 198029 198283 336 + . . scaffold477 GLEAN mRNA 202658 202701 0.811187 - . ID=CGI_10012317; scaffold477 TRF Tandem_Repeat 202658 202701 70 + . . scaffold477 GLEAN mRNA 203384 203437 0.811187 - . ID=CGI_10012317; scaffold477 TRF Tandem_Repeat 203384 203437 108 + . . scaffold477 GLEAN mRNA 210488 210549 0.811187 - . ID=CGI_10012317; scaffold477 TRF Tandem_Repeat 210488 210549 67 + . . scaffold477 GLEAN mRNA 231922 232045 0.65113 - . ID=CGI_10012319; scaffold477 TRF Tandem_Repeat 231922 232045 89 + . . scaffold477 GLEAN mRNA 234137 234175 0.65113 - . ID=CGI_10012319; scaffold477 TRF Tandem_Repeat 234137 234175 78 + . . scaffold477 GLEAN mRNA 234649 235221 0.65113 - . ID=CGI_10012319; scaffold477 TRF Tandem_Repeat 234649 235221 966 + . . scaffold477 GLEAN mRNA 240786 240855 0.65113 - . ID=CGI_10012319; scaffold477 TRF Tandem_Repeat 240786 240855 108 + . . scaffold1125 GLEAN mRNA 11570 12380 1 - . ID=CGI_10012322; scaffold1125 TRF Tandem_Repeat 11570 12380 920 + . . scaffold1125 GLEAN mRNA 13160 13197 1 - . ID=CGI_10012322; scaffold1125 TRF Tandem_Repeat 13160 13197 51 + . . scaffold1125 GLEAN mRNA 11570 12380 0.993413 + . ID=CGI_10012323; scaffold1125 TRF Tandem_Repeat 11570 12380 920 + . . scaffold1125 GLEAN mRNA 13160 13197 0.993413 + . ID=CGI_10012323; scaffold1125 TRF Tandem_Repeat 13160 13197 51 + . . scaffold1125 GLEAN mRNA 112400 112622 1 + . ID=CGI_10012329; scaffold1125 TRF Tandem_Repeat 112400 112622 195 + . . scaffold1125 GLEAN mRNA 137277 137312 1 + . ID=CGI_10012331; scaffold1125 TRF Tandem_Repeat 137277 137312 72 + . . scaffold1125 GLEAN mRNA 161518 161559 0.702385 - . ID=CGI_10012335; scaffold1125 TRF Tandem_Repeat 161518 161559 84 + . . scaffold1125 GLEAN mRNA 194556 194586 0.366465 - . ID=CGI_10012338; scaffold1125 TRF Tandem_Repeat 194556 194586 53 + . . scaffold1125 GLEAN mRNA 196307 196507 0.366465 - . ID=CGI_10012338; scaffold1125 WUBlastX DNA_hAT 196307 196507 107 - . . scaffold1125 GLEAN mRNA 195933 196046 0.366465 - . ID=CGI_10012338; scaffold1125 WUBlastX DNA_hAT 195933 196046 68 - . . scaffold1125 GLEAN mRNA 202284 202320 0.366465 - . ID=CGI_10012338; scaffold1125 TRF Tandem_Repeat 202284 202320 74 + . . scaffold1125 GLEAN mRNA 197646 198398 0.366465 - . ID=CGI_10012338; scaffold1125 WUBlastX DNA_hAT 197646 198398 294 - . . scaffold1125 GLEAN mRNA 223467 223858 0.366465 - . ID=CGI_10012338; scaffold1125 TRF Tandem_Repeat 223467 223858 658 + . . scaffold1125 GLEAN mRNA 202284 202320 1 + . ID=CGI_10012339; scaffold1125 TRF Tandem_Repeat 202284 202320 74 + . . scaffold1125 GLEAN mRNA 235462 235759 0.642063 - . ID=CGI_10012341; scaffold1125 TRF Tandem_Repeat 235462 235759 436 + . . scaffold1125 GLEAN mRNA 235462 235759 0.642063 - . ID=CGI_10012341; scaffold1125 TRF Tandem_Repeat 235462 235759 481 + . . scaffold1125 GLEAN mRNA 237072 237301 0.642063 - . ID=CGI_10012341; scaffold1125 TRF Tandem_Repeat 237072 237301 325 + . . scaffold1125 GLEAN mRNA 237043 237305 0.642063 - . ID=CGI_10012341; scaffold1125 TRF Tandem_Repeat 237043 237305 354 + . . scaffold1125 GLEAN mRNA 237043 237305 0.642063 - . ID=CGI_10012341; scaffold1125 TRF Tandem_Repeat 237043 237305 275 + . . scaffold1125 GLEAN mRNA 264422 264486 0.367081 + . ID=CGI_10012342; scaffold1125 TRF Tandem_Repeat 264422 264486 130 + . . scaffold1125 GLEAN mRNA 274163 274885 0.367081 + . ID=CGI_10012342; scaffold1125 WUBlastX LINE_L1-Tx1 274163 274885 133 - . . scaffold1125 GLEAN mRNA 274945 276555 0.367081 + . ID=CGI_10012342; scaffold1125 WUBlastX LINE_L1-Tx1 274945 276555 169 - . . scaffold1125 GLEAN mRNA 275719 276426 0.367081 + . ID=CGI_10012342; scaffold1125 WUBlastX LINE_L1-Tx1 275719 276426 213 - . . scaffold1125 GLEAN mRNA 296665 297336 0.367081 + . ID=CGI_10012342; scaffold1125 WUBlastX LINE_Penelope 296665 297336 21 - . . scaffold1125 GLEAN mRNA 296521 297084 0.367081 + . ID=CGI_10012342; scaffold1125 WUBlastX LINE_Penelope 296521 297084 89 - . . scaffold1125 GLEAN mRNA 296698 297153 0.367081 + . ID=CGI_10012342; scaffold1125 WUBlastX LINE_Penelope 296698 297153 30 - . . scaffold1125 GLEAN mRNA 321647 321678 0.994393 - . ID=CGI_10012343; scaffold1125 TRF Tandem_Repeat 321647 321678 50 + . . scaffold43786 GLEAN mRNA 2531 2561 1 + . ID=CGI_10012344; scaffold43786 TRF Tandem_Repeat 2531 2561 55 + . . scaffold43786 GLEAN mRNA 4154 4188 1 + . ID=CGI_10012344; scaffold43786 TRF Tandem_Repeat 4154 4188 52 + . . scaffold43786 GLEAN mRNA 16550 16723 0.928492 + . ID=CGI_10012345; scaffold43786 TRF Tandem_Repeat 16550 16723 138 + . . scaffold43786 GLEAN mRNA 21269 21304 0.928492 + . ID=CGI_10012345; scaffold43786 TRF Tandem_Repeat 21269 21304 54 + . . scaffold43786 GLEAN mRNA 27346 27379 0.928492 + . ID=CGI_10012345; scaffold43786 TRF Tandem_Repeat 27346 27379 68 + . . scaffold43786 GLEAN mRNA 29438 29601 0.928492 + . ID=CGI_10012345; scaffold43786 TRF Tandem_Repeat 29438 29601 195 + . . scaffold43786 GLEAN mRNA 45373 45427 1 + . ID=CGI_10012347; scaffold43786 TRF Tandem_Repeat 45373 45427 110 + . . scaffold43786 GLEAN mRNA 60100 60136 0.319 - . ID=CGI_10012348; scaffold43786 TRF Tandem_Repeat 60100 60136 74 + . . scaffold43786 GLEAN mRNA 102345 102523 0.319 - . ID=CGI_10012348; scaffold43786 TRF Tandem_Repeat 102345 102523 207 + . . scaffold43786 GLEAN mRNA 102345 102558 0.319 - . ID=CGI_10012348; scaffold43786 TRF Tandem_Repeat 102345 102558 206 + . . scaffold43786 GLEAN mRNA 102536 103264 0.319 - . ID=CGI_10012348; scaffold43786 TRF Tandem_Repeat 102536 103264 342 + . . scaffold43786 GLEAN mRNA 102650 102826 0.319 - . ID=CGI_10012348; scaffold43786 TRF Tandem_Repeat 102650 102826 223 + . . scaffold43786 GLEAN mRNA 102637 104259 0.319 - . ID=CGI_10012348; scaffold43786 TRF Tandem_Repeat 102637 104259 1941 + . . scaffold43786 GLEAN mRNA 102837 103078 0.319 - . ID=CGI_10012348; scaffold43786 TRF Tandem_Repeat 102837 103078 147 + . . scaffold43786 GLEAN mRNA 103093 104284 0.319 - . ID=CGI_10012348; scaffold43786 TRF Tandem_Repeat 103093 104284 889 + . . scaffold43786 GLEAN mRNA 119944 119989 0.319 - . ID=CGI_10012348; scaffold43786 TRF Tandem_Repeat 119944 119989 58 + . . scaffold43786 GLEAN mRNA 119941 119990 0.319 - . ID=CGI_10012348; scaffold43786 TRF Tandem_Repeat 119941 119990 66 + . . scaffold43786 GLEAN mRNA 125038 125357 0.319 - . ID=CGI_10012348; scaffold43786 TRF Tandem_Repeat 125038 125357 170 + . . scaffold43786 GLEAN mRNA 125034 125231 0.319 - . ID=CGI_10012348; scaffold43786 TRF Tandem_Repeat 125034 125231 204 + . . scaffold43786 GLEAN mRNA 185096 185125 0.899962 + . ID=CGI_10012352; scaffold43786 TRF Tandem_Repeat 185096 185125 60 + . . scaffold43786 GLEAN mRNA 212300 212342 1 + . ID=CGI_10012353; scaffold43786 TRF Tandem_Repeat 212300 212342 86 + . . scaffold43786 GLEAN mRNA 228549 229832 0.997994 - . ID=CGI_10012355; scaffold43786 TRF Tandem_Repeat 228549 229832 1641 + . . scaffold43786 GLEAN mRNA 234650 234908 0.999342 - . ID=CGI_10012356; scaffold43786 TRF Tandem_Repeat 234650 234908 80 + . . scaffold43786 GLEAN mRNA 235498 235827 0.999342 - . ID=CGI_10012356; scaffold43786 TRF Tandem_Repeat 235498 235827 391 + . . scaffold43786 GLEAN mRNA 235498 235837 0.999342 - . ID=CGI_10012356; scaffold43786 TRF Tandem_Repeat 235498 235837 395 + . . scaffold43786 GLEAN mRNA 241024 241059 0.999342 - . ID=CGI_10012356; scaffold43786 TRF Tandem_Repeat 241024 241059 72 + . . scaffold43786 GLEAN mRNA 245944 245979 0.999342 - . ID=CGI_10012356; scaffold43786 TRF Tandem_Repeat 245944 245979 72 + . . scaffold43786 GLEAN mRNA 252853 252904 0.999342 - . ID=CGI_10012356; scaffold43786 TRF Tandem_Repeat 252853 252904 90 + . . scaffold43786 GLEAN mRNA 253007 253078 0.999342 - . ID=CGI_10012356; scaffold43786 TRF Tandem_Repeat 253007 253078 87 + . . scaffold43786 GLEAN mRNA 253161 253214 0.999342 - . ID=CGI_10012356; scaffold43786 TRF Tandem_Repeat 253161 253214 87 + . . scaffold43786 GLEAN mRNA 253163 253215 0.999342 - . ID=CGI_10012356; scaffold43786 TRF Tandem_Repeat 253163 253215 106 + . . scaffold43786 GLEAN mRNA 260119 260156 0.999342 - . ID=CGI_10012356; scaffold43786 TRF Tandem_Repeat 260119 260156 76 + . . scaffold43786 GLEAN mRNA 249246 249443 0.999342 - . ID=CGI_10012356; scaffold43786 WUBlastX LINE_L1-Tx1 249246 249443 123 - . . scaffold43786 GLEAN mRNA 248047 249228 0.999342 - . ID=CGI_10012356; scaffold43786 WUBlastX LINE_L1-Tx1 248047 249228 438 - . . scaffold43786 GLEAN mRNA 249388 250305 0.999342 - . ID=CGI_10012356; scaffold43786 WUBlastX LINE_L1-Tx1 249388 250305 554 - . . scaffold43786 GLEAN mRNA 249436 250491 0.999342 - . ID=CGI_10012356; scaffold43786 WUBlastX LINE_L1-Tx1 249436 250491 368 - . . scaffold43786 GLEAN mRNA 274833 274878 0.999342 - . ID=CGI_10012356; scaffold43786 TRF Tandem_Repeat 274833 274878 92 + . . scaffold43786 GLEAN mRNA 262141 262201 0.999342 - . ID=CGI_10012356; scaffold43786 TRF Tandem_Repeat 262141 262201 70 + . . scaffold43786 GLEAN mRNA 279356 279446 0.937808 + . ID=CGI_10012357; scaffold43786 TRF Tandem_Repeat 279356 279446 182 + . . scaffold43786 GLEAN mRNA 279948 279990 0.937808 + . ID=CGI_10012357; scaffold43786 TRF Tandem_Repeat 279948 279990 86 + . . scaffold43786 GLEAN mRNA 283642 283675 0.937808 + . ID=CGI_10012357; scaffold43786 TRF Tandem_Repeat 283642 283675 59 + . . scaffold43786 GLEAN mRNA 283881 283924 0.937808 + . ID=CGI_10012357; scaffold43786 TRF Tandem_Repeat 283881 283924 54 + . . scaffold43786 GLEAN mRNA 278512 278587 0.937808 + . ID=CGI_10012357; scaffold43786 TRF Tandem_Repeat 278512 278587 92 + . . scaffold43786 GLEAN mRNA 278512 278576 0.937808 + . ID=CGI_10012357; scaffold43786 TRF Tandem_Repeat 278512 278576 121 + . . scaffold43786 GLEAN mRNA 286370 286457 0.999676 + . ID=CGI_10012358; scaffold43786 TRF Tandem_Repeat 286370 286457 176 + . . scaffold43782 GLEAN mRNA 63556 63582 0.819556 + . ID=CGI_10012361; scaffold43782 TRF Tandem_Repeat 63556 63582 54 + . . scaffold43782 GLEAN mRNA 88459 88492 0.993582 + . ID=CGI_10012363; scaffold43782 TRF Tandem_Repeat 88459 88492 68 + . . scaffold43782 GLEAN mRNA 88844 88885 0.993582 + . ID=CGI_10012363; scaffold43782 TRF Tandem_Repeat 88844 88885 84 + . . scaffold43782 GLEAN mRNA 92955 93033 1 + . ID=CGI_10012364; scaffold43782 TRF Tandem_Repeat 92955 93033 135 + . . scaffold43782 GLEAN mRNA 97254 97299 1 - . ID=CGI_10012365; scaffold43782 TRF Tandem_Repeat 97254 97299 92 + . . scaffold43782 GLEAN mRNA 100587 100617 1 - . ID=CGI_10012365; scaffold43782 TRF Tandem_Repeat 100587 100617 62 + . . scaffold43782 GLEAN mRNA 114641 114676 0.999947 + . ID=CGI_10012366; scaffold43782 TRF Tandem_Repeat 114641 114676 72 + . . scaffold43782 GLEAN mRNA 112588 112815 0.999947 + . ID=CGI_10012366; scaffold43782 WUBlastX LINE_R2 112588 112815 36 - . . scaffold43782 GLEAN mRNA 112198 112746 0.999947 + . ID=CGI_10012366; scaffold43782 WUBlastX LINE_RTE-X 112198 112746 193 - . . scaffold43782 GLEAN mRNA 112327 112743 0.999947 + . ID=CGI_10012366; scaffold43782 WUBlastX LINE_RTE-X 112327 112743 203 - . . scaffold43782 GLEAN mRNA 113190 113471 0.999947 + . ID=CGI_10012366; scaffold43782 WUBlastX LINE_RTE-X 113190 113471 182 - . . scaffold43782 GLEAN mRNA 114028 114084 0.999947 + . ID=CGI_10012366; scaffold43782 WUBlastX LINE_CR1-L2 114028 114084 21 - . . scaffold43782 GLEAN mRNA 113130 113546 0.999947 + . ID=CGI_10012366; scaffold43782 WUBlastX LINE_RTE-X 113130 113546 159 - . . scaffold43782 GLEAN mRNA 113190 113612 0.999947 + . ID=CGI_10012366; scaffold43782 WUBlastX LINE_L2 113190 113612 44 - . . scaffold43782 GLEAN mRNA 112784 113173 0.999947 + . ID=CGI_10012366; scaffold43782 WUBlastX LINE_RTE-X 112784 113173 218 - . . scaffold43782 GLEAN mRNA 111476 112273 0.999947 + . ID=CGI_10012366; scaffold43782 WUBlastX LINE_RTE-X 111476 112273 106 - . . scaffold43782 GLEAN mRNA 119665 119712 0.999947 + . ID=CGI_10012366; scaffold43782 TRF Tandem_Repeat 119665 119712 87 + . . scaffold43782 GLEAN mRNA 144103 144312 0.674769 + . ID=CGI_10012367; scaffold43782 WUBlastX LTR_DIRS 144103 144312 53 + . . scaffold43782 GLEAN mRNA 245013 245045 1 - . ID=CGI_10012370; scaffold43782 TRF Tandem_Repeat 245013 245045 57 + . . scaffold43782 GLEAN mRNA 245013 245045 0.64999 + . ID=CGI_10012371; scaffold43782 TRF Tandem_Repeat 245013 245045 57 + . . scaffold43782 GLEAN mRNA 252061 252112 0.64999 + . ID=CGI_10012371; scaffold43782 TRF Tandem_Repeat 252061 252112 52 + . . scaffold43782 GLEAN mRNA 251523 251840 0.64999 + . ID=CGI_10012371; scaffold43782 WUBlastX LINE_RTE-X 251523 251840 39 + . . scaffold43782 GLEAN mRNA 265354 265474 1 - . ID=CGI_10012373; scaffold43782 TRF Tandem_Repeat 265354 265474 188 + . . scaffold43782 GLEAN mRNA 266544 266581 1 - . ID=CGI_10012373; scaffold43782 TRF Tandem_Repeat 266544 266581 76 + . . scaffold43782 GLEAN mRNA 268060 268188 1 - . ID=CGI_10012373; scaffold43782 TRF Tandem_Repeat 268060 268188 103 + . . scaffold43782 GLEAN mRNA 268050 268172 1 - . ID=CGI_10012373; scaffold43782 TRF Tandem_Repeat 268050 268172 185 + . . scaffold1652 GLEAN mRNA 6960 7236 1 + . ID=CGI_10012376; scaffold1652 TRF Tandem_Repeat 6960 7236 319 + . . scaffold1652 GLEAN mRNA 39528 39570 0.666531 + . ID=CGI_10012378; scaffold1652 TRF Tandem_Repeat 39528 39570 68 + . . scaffold1652 GLEAN mRNA 48606 48638 0.666531 + . ID=CGI_10012378; scaffold1652 TRF Tandem_Repeat 48606 48638 66 + . . scaffold1652 GLEAN mRNA 50485 50540 0.666531 + . ID=CGI_10012378; scaffold1652 TRF Tandem_Repeat 50485 50540 67 + . . scaffold1652 GLEAN mRNA 61957 62096 0.812526 - . ID=CGI_10012379; scaffold1652 TRF Tandem_Repeat 61957 62096 145 + . . scaffold1652 GLEAN mRNA 61939 62099 0.812526 - . ID=CGI_10012379; scaffold1652 TRF Tandem_Repeat 61939 62099 119 + . . scaffold1652 GLEAN mRNA 61919 62096 0.812526 - . ID=CGI_10012379; scaffold1652 TRF Tandem_Repeat 61919 62096 162 + . . scaffold1652 GLEAN mRNA 62680 62736 0.812526 - . ID=CGI_10012379; scaffold1652 TRF Tandem_Repeat 62680 62736 114 + . . scaffold1652 GLEAN mRNA 62784 62820 0.812526 - . ID=CGI_10012379; scaffold1652 TRF Tandem_Repeat 62784 62820 65 + . . scaffold1652 GLEAN mRNA 67735 67950 0.812526 - . ID=CGI_10012379; scaffold1652 TRF Tandem_Repeat 67735 67950 143 + . . scaffold1652 GLEAN mRNA 72081 72205 0.812526 - . ID=CGI_10012379; scaffold1652 TRF Tandem_Repeat 72081 72205 142 + . . scaffold1652 GLEAN mRNA 74683 74723 0.999997 - . ID=CGI_10012380; scaffold1652 TRF Tandem_Repeat 74683 74723 82 + . . scaffold1652 GLEAN mRNA 102039 102074 0.999676 - . ID=CGI_10012382; scaffold1652 TRF Tandem_Repeat 102039 102074 72 + . . scaffold1652 GLEAN mRNA 115322 115979 0.714436 + . ID=CGI_10012384; scaffold1652 TRF Tandem_Repeat 115322 115979 1032 + . . scaffold1652 GLEAN mRNA 122964 123030 0.999999 + . ID=CGI_10012385; scaffold1652 TRF Tandem_Repeat 122964 123030 79 + . . scaffold1652 GLEAN mRNA 128798 128864 0.999999 + . ID=CGI_10012385; scaffold1652 TRF Tandem_Repeat 128798 128864 125 + . . scaffold1652 GLEAN mRNA 138227 138251 0.995871 + . ID=CGI_10012387; scaffold1652 TRF Tandem_Repeat 138227 138251 50 + . . scaffold1652 GLEAN mRNA 151901 151934 0.999412 - . ID=CGI_10012388; scaffold1652 TRF Tandem_Repeat 151901 151934 52 + . . scaffold1652 GLEAN mRNA 153240 154366 0.999412 - . ID=CGI_10012388; scaffold1652 TRF Tandem_Repeat 153240 154366 1672 + . . scaffold1652 GLEAN mRNA 154390 154439 0.999412 - . ID=CGI_10012388; scaffold1652 TRF Tandem_Repeat 154390 154439 55 + . . scaffold1652 GLEAN mRNA 154393 154448 0.999412 - . ID=CGI_10012388; scaffold1652 TRF Tandem_Repeat 154393 154448 67 + . . scaffold1652 GLEAN mRNA 154390 154447 0.999412 - . ID=CGI_10012388; scaffold1652 TRF Tandem_Repeat 154390 154447 62 + . . scaffold1652 GLEAN mRNA 172642 173032 0.955041 - . ID=CGI_10012389; scaffold1652 TRF Tandem_Repeat 172642 173032 610 + . . scaffold1652 GLEAN mRNA 172642 173032 0.955041 - . ID=CGI_10012389; scaffold1652 TRF Tandem_Repeat 172642 173032 610 + . . scaffold1652 GLEAN mRNA 173580 173689 0.955041 - . ID=CGI_10012389; scaffold1652 TRF Tandem_Repeat 173580 173689 193 + . . scaffold1652 GLEAN mRNA 183248 183282 1 + . ID=CGI_10012390; scaffold1652 TRF Tandem_Repeat 183248 183282 70 + . . scaffold1652 GLEAN mRNA 186884 187833 1 + . ID=CGI_10012390; scaffold1652 TRF Tandem_Repeat 186884 187833 1115 + . . scaffold1652 GLEAN mRNA 192364 192524 0.999949 - . ID=CGI_10012391; scaffold1652 TRF Tandem_Repeat 192364 192524 61 + . . scaffold1652 GLEAN mRNA 193527 194293 0.999949 - . ID=CGI_10012391; scaffold1652 TRF Tandem_Repeat 193527 194293 967 + . . scaffold1652 GLEAN mRNA 225573 225779 0.999676 - . ID=CGI_10012393; scaffold1652 WUBlastX LINE_CR1 225573 225779 25 - . . scaffold1652 GLEAN mRNA 226018 227061 0.999676 - . ID=CGI_10012393; scaffold1652 WUBlastX RC_Helitron 226018 227061 137 - . . scaffold1652 GLEAN mRNA 224905 225096 0.999676 - . ID=CGI_10012393; scaffold1652 WUBlastX RC_Helitron 224905 225096 45 - . . scaffold1652 GLEAN mRNA 234415 234570 0.999676 - . ID=CGI_10012393; scaffold1652 TRF Tandem_Repeat 234415 234570 100 + . . scaffold1652 GLEAN mRNA 234440 234560 0.999676 - . ID=CGI_10012393; scaffold1652 TRF Tandem_Repeat 234440 234560 66 + . . scaffold1652 GLEAN mRNA 239948 240029 0.999676 - . ID=CGI_10012393; scaffold1652 TRF Tandem_Repeat 239948 240029 78 + . . scaffold1652 GLEAN mRNA 239959 240029 0.999676 - . ID=CGI_10012393; scaffold1652 TRF Tandem_Repeat 239959 240029 88 + . . scaffold1652 GLEAN mRNA 240070 240144 0.999676 - . ID=CGI_10012393; scaffold1652 TRF Tandem_Repeat 240070 240144 143 + . . scaffold1652 GLEAN mRNA 230605 231291 0.999676 - . ID=CGI_10012393; scaffold1652 WUBlastX RC_Helitron 230605 231291 381 - . . scaffold1652 GLEAN mRNA 230380 231489 0.999676 - . ID=CGI_10012393; scaffold1652 WUBlastX RC_Helitron 230380 231489 87 - . . scaffold1652 GLEAN mRNA 231487 232071 0.999676 - . ID=CGI_10012393; scaffold1652 WUBlastX RC_Helitron 231487 232071 56 - . . scaffold1652 GLEAN mRNA 226231 231123 0.999676 - . ID=CGI_10012393; scaffold1652 WUBlastX RC_Helitron 226231 231123 2518 - . . scaffold1652 GLEAN mRNA 254238 254552 0.627942 + . ID=CGI_10012394; scaffold1652 TRF Tandem_Repeat 254238 254552 576 + . . scaffold1652 GLEAN mRNA 278911 279012 0.976399 - . ID=CGI_10012395; scaffold1652 TRF Tandem_Repeat 278911 279012 95 + . . scaffold1112 GLEAN mRNA 114721 114747 1 - . ID=CGI_10012401; scaffold1112 TRF Tandem_Repeat 114721 114747 54 + . . scaffold1112 GLEAN mRNA 114909 114983 1 - . ID=CGI_10012401; scaffold1112 TRF Tandem_Repeat 114909 114983 141 + . . scaffold1112 GLEAN mRNA 132370 132415 0.651418 - . ID=CGI_10012403; scaffold1112 TRF Tandem_Repeat 132370 132415 92 + . . scaffold1112 GLEAN mRNA 139571 140661 1 + . ID=CGI_10012404; scaffold1112 TRF Tandem_Repeat 139571 140661 1648 + . . scaffold1112 GLEAN mRNA 167898 167959 0.854621 - . ID=CGI_10012405; scaffold1112 TRF Tandem_Repeat 167898 167959 115 + . . scaffold1112 GLEAN mRNA 168080 168128 0.854621 - . ID=CGI_10012405; scaffold1112 TRF Tandem_Repeat 168080 168128 89 + . . scaffold1112 GLEAN mRNA 169209 169328 0.854621 - . ID=CGI_10012405; scaffold1112 TRF Tandem_Repeat 169209 169328 78 + . . scaffold1112 GLEAN mRNA 169151 169269 0.854621 - . ID=CGI_10012405; scaffold1112 TRF Tandem_Repeat 169151 169269 75 + . . scaffold1112 GLEAN mRNA 181492 181522 1 + . ID=CGI_10012406; scaffold1112 TRF Tandem_Repeat 181492 181522 62 + . . scaffold1112 GLEAN mRNA 195333 195368 0.999699 - . ID=CGI_10012407; scaffold1112 TRF Tandem_Repeat 195333 195368 72 + . . scaffold1112 GLEAN mRNA 197175 197219 0.999699 - . ID=CGI_10012407; scaffold1112 TRF Tandem_Repeat 197175 197219 90 + . . scaffold1112 GLEAN mRNA 226580 226607 0.693171 - . ID=CGI_10012410; scaffold1112 TRF Tandem_Repeat 226580 226607 56 + . . scaffold43794 GLEAN mRNA 37971 38043 1 + . ID=CGI_10012413; scaffold43794 TRF Tandem_Repeat 37971 38043 146 + . . scaffold43794 GLEAN mRNA 39741 39785 1 + . ID=CGI_10012413; scaffold43794 TRF Tandem_Repeat 39741 39785 90 + . . scaffold43794 GLEAN mRNA 84076 84344 0.914367 - . ID=CGI_10012417; scaffold43794 TRF Tandem_Repeat 84076 84344 375 + . . scaffold43794 GLEAN mRNA 93921 94308 0.914367 - . ID=CGI_10012417; scaffold43794 TRF Tandem_Repeat 93921 94308 650 + . . scaffold43794 GLEAN mRNA 95938 96026 0.914367 - . ID=CGI_10012417; scaffold43794 TRF Tandem_Repeat 95938 96026 54 + . . scaffold43794 GLEAN mRNA 97162 97674 0.914367 - . ID=CGI_10012417; scaffold43794 WUBlastX LINE_RTE-X 97162 97674 70 - . . scaffold43794 GLEAN mRNA 97297 97785 0.914367 - . ID=CGI_10012417; scaffold43794 WUBlastX LINE_RTE-X 97297 97785 86 - . . scaffold43794 GLEAN mRNA 265901 265934 0.726785 + . ID=CGI_10012420; scaffold43794 TRF Tandem_Repeat 265901 265934 52 + . . scaffold498 GLEAN mRNA 117550 117828 0.999546 - . ID=CGI_10012422; scaffold498 TRF Tandem_Repeat 117550 117828 423 + . . scaffold498 GLEAN mRNA 113776 115821 0.999546 - . ID=CGI_10012422; scaffold498 WUBlastX DNA_En-Spm 113776 115821 1029 - . . scaffold498 GLEAN mRNA 113773 115512 0.999546 - . ID=CGI_10012422; scaffold498 WUBlastX DNA_En-Spm 113773 115512 1160 - . . scaffold498 GLEAN mRNA 143318 143367 0.954629 + . ID=CGI_10012426; scaffold498 TRF Tandem_Repeat 143318 143367 100 + . . scaffold498 GLEAN mRNA 144596 144627 0.954629 + . ID=CGI_10012426; scaffold498 TRF Tandem_Repeat 144596 144627 55 + . . scaffold498 GLEAN mRNA 146271 146323 0.954629 + . ID=CGI_10012426; scaffold498 TRF Tandem_Repeat 146271 146323 106 + . . scaffold498 GLEAN mRNA 218824 219512 0.790288 + . ID=CGI_10012429; scaffold498 TRF Tandem_Repeat 218824 219512 647 + . . scaffold498 GLEAN mRNA 218824 219512 0.790288 + . ID=CGI_10012429; scaffold498 TRF Tandem_Repeat 218824 219512 830 + . . scaffold498 GLEAN mRNA 218824 219512 0.790288 + . ID=CGI_10012429; scaffold498 TRF Tandem_Repeat 218824 219512 805 + . . scaffold498 GLEAN mRNA 237182 238243 0.470322 + . ID=CGI_10012431; scaffold498 TRF Tandem_Repeat 237182 238243 1663 + . . scaffold498 GLEAN mRNA 232594 233475 0.470322 + . ID=CGI_10012431; scaffold498 WUBlastX DNA_Sola 232594 233475 442 - . . scaffold498 GLEAN mRNA 232021 233472 0.470322 + . ID=CGI_10012431; scaffold498 WUBlastX DNA_Sola 232021 233472 432 - . . scaffold498 GLEAN mRNA 246705 247053 0.470322 + . ID=CGI_10012431; scaffold498 TRF Tandem_Repeat 246705 247053 134 + . . scaffold498 GLEAN mRNA 253688 253745 0.470322 + . ID=CGI_10012431; scaffold498 TRF Tandem_Repeat 253688 253745 70 + . . scaffold498 GLEAN mRNA 253680 253745 0.470322 + . ID=CGI_10012431; scaffold498 TRF Tandem_Repeat 253680 253745 114 + . . scaffold498 GLEAN mRNA 253679 253738 0.470322 + . ID=CGI_10012431; scaffold498 TRF Tandem_Repeat 253679 253738 84 + . . scaffold498 GLEAN mRNA 253769 254563 0.470322 + . ID=CGI_10012431; scaffold498 TRF Tandem_Repeat 253769 254563 1170 + . . scaffold498 GLEAN mRNA 282787 282812 0.470322 + . ID=CGI_10012431; scaffold498 TRF Tandem_Repeat 282787 282812 52 + . . scaffold498 GLEAN mRNA 285103 285205 0.470322 + . ID=CGI_10012431; scaffold498 TRF Tandem_Repeat 285103 285205 80 + . . scaffold498 GLEAN mRNA 282787 282812 0.521871 - . ID=CGI_10012432; scaffold498 TRF Tandem_Repeat 282787 282812 52 + . . scaffold498 GLEAN mRNA 285103 285205 0.521871 - . ID=CGI_10012432; scaffold498 TRF Tandem_Repeat 285103 285205 80 + . . scaffold498 GLEAN mRNA 296126 296163 0.934327 + . ID=CGI_10012433; scaffold498 TRF Tandem_Repeat 296126 296163 76 + . . scaffold498 GLEAN mRNA 299250 299304 0.934327 + . ID=CGI_10012433; scaffold498 TRF Tandem_Repeat 299250 299304 110 + . . scaffold1805 GLEAN mRNA 13045 13089 0.949777 + . ID=CGI_10012437; scaffold1805 TRF Tandem_Repeat 13045 13089 81 + . . scaffold1805 GLEAN mRNA 141246 141496 0.593344 + . ID=CGI_10012443; scaffold1805 TRF Tandem_Repeat 141246 141496 259 + . . scaffold1805 GLEAN mRNA 143152 143183 0.593344 + . ID=CGI_10012443; scaffold1805 TRF Tandem_Repeat 143152 143183 55 + . . scaffold1805 GLEAN mRNA 147708 147931 0.593344 + . ID=CGI_10012443; scaffold1805 TRF Tandem_Repeat 147708 147931 335 + . . scaffold1805 GLEAN mRNA 257236 257559 0.472749 - . ID=CGI_10012447; scaffold1805 TRF Tandem_Repeat 257236 257559 551 + . . scaffold1805 GLEAN mRNA 264219 264659 0.472749 - . ID=CGI_10012447; scaffold1805 TRF Tandem_Repeat 264219 264659 503 + . . scaffold1805 GLEAN mRNA 286530 286563 0.99428 + . ID=CGI_10012449; scaffold1805 TRF Tandem_Repeat 286530 286563 68 + . . scaffold1805 GLEAN mRNA 315028 315132 0.447179 - . ID=CGI_10012452; scaffold1805 TRF Tandem_Repeat 315028 315132 174 + . . scaffold550 GLEAN mRNA 30322 30350 0.819652 + . ID=CGI_10012482; scaffold550 TRF Tandem_Repeat 30322 30350 58 + . . scaffold550 GLEAN mRNA 30350 30406 0.819652 + . ID=CGI_10012482; scaffold550 TRF Tandem_Repeat 30350 30406 114 + . . scaffold550 GLEAN mRNA 35193 35234 0.819652 + . ID=CGI_10012482; scaffold550 TRF Tandem_Repeat 35193 35234 68 + . . scaffold550 GLEAN mRNA 45983 46156 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX DNA_Harbinger 45983 46156 41 + . . scaffold550 GLEAN mRNA 55836 55882 0.723644 + . ID=CGI_10012483; scaffold550 TRF Tandem_Repeat 55836 55882 94 + . . scaffold550 GLEAN mRNA 56303 56342 0.723644 + . ID=CGI_10012483; scaffold550 TRF Tandem_Repeat 56303 56342 80 + . . scaffold550 GLEAN mRNA 61940 62035 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX LINE_L1-Tx1 61940 62035 20 - . . scaffold550 GLEAN mRNA 57209 57670 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX DNA_Harbinger 57209 57670 70 - . . scaffold550 GLEAN mRNA 59567 61198 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX LINE_L1-Tx1 59567 61198 225 - . . scaffold550 GLEAN mRNA 61206 61277 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX LINE_L1-Tx1 61206 61277 63 - . . scaffold550 GLEAN mRNA 54909 55277 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX DNA_Harbinger 54909 55277 248 - . . scaffold550 GLEAN mRNA 56495 56614 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX DNA_Harbinger 56495 56614 133 - . . scaffold550 GLEAN mRNA 57209 57577 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX DNA_Harbinger 57209 57577 119 - . . scaffold550 GLEAN mRNA 61206 61319 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX LINE_L1 61206 61319 46 - . . scaffold550 GLEAN mRNA 61209 61301 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX LINE_L1-Tx1 61209 61301 55 - . . scaffold550 GLEAN mRNA 56147 56266 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX DNA_Harbinger 56147 56266 66 - . . scaffold550 GLEAN mRNA 56129 56221 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX DNA_Harbinger 56129 56221 35 - . . scaffold550 GLEAN mRNA 56456 56617 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX DNA_Harbinger 56456 56617 98 - . . scaffold550 GLEAN mRNA 61197 61367 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX LINE_L1 61197 61367 44 - . . scaffold550 GLEAN mRNA 86569 86611 0.999669 + . ID=CGI_10012485; scaffold550 TRF Tandem_Repeat 86569 86611 86 + . . scaffold550 GLEAN mRNA 101574 101616 0.829395 + . ID=CGI_10012486; scaffold550 TRF Tandem_Repeat 101574 101616 86 + . . scaffold550 GLEAN mRNA 113158 113423 0.829395 + . ID=CGI_10012486; scaffold550 TRF Tandem_Repeat 113158 113423 345 + . . scaffold550 GLEAN mRNA 118680 120271 1 - . ID=CGI_10012488; scaffold550 TRF Tandem_Repeat 118680 120271 1965 + . . scaffold550 GLEAN mRNA 120440 120494 1 - . ID=CGI_10012488; scaffold550 TRF Tandem_Repeat 120440 120494 78 + . . scaffold550 GLEAN mRNA 121027 121059 1 - . ID=CGI_10012488; scaffold550 TRF Tandem_Repeat 121027 121059 66 + . . scaffold550 GLEAN mRNA 128919 128964 0.820999 + . ID=CGI_10012489; scaffold550 TRF Tandem_Repeat 128919 128964 92 + . . scaffold550 GLEAN mRNA 151397 151463 0.969581 - . ID=CGI_10012490; scaffold550 TRF Tandem_Repeat 151397 151463 98 + . . scaffold550 GLEAN mRNA 150305 151396 0.969581 - . ID=CGI_10012490; scaffold550 WUBlastX DNA_Helitron 150305 151396 175 - . . scaffold550 GLEAN mRNA 149373 149684 0.969581 - . ID=CGI_10012490; scaffold550 WUBlastX RC_Helitron 149373 149684 41 - . . scaffold550 GLEAN mRNA 150734 151387 0.969581 - . ID=CGI_10012490; scaffold550 WUBlastX RC_Helitron 150734 151387 251 - . . scaffold550 GLEAN mRNA 149470 150264 0.969581 - . ID=CGI_10012490; scaffold550 WUBlastX DNA_Helitron 149470 150264 128 - . . scaffold550 GLEAN mRNA 192658 193503 0.634785 + . ID=CGI_10012493; scaffold550 WUBlastX LTR_Gypsy 192658 193503 495 - . . scaffold550 GLEAN mRNA 194263 194850 0.634785 + . ID=CGI_10012493; scaffold550 WUBlastX LTR_Gypsy 194263 194850 147 - . . scaffold550 GLEAN mRNA 193655 194092 0.634785 + . ID=CGI_10012493; scaffold550 WUBlastX LTR_Gypsy 193655 194092 148 - . . scaffold550 GLEAN mRNA 194008 194847 0.634785 + . ID=CGI_10012493; scaffold550 WUBlastX LTR_Gypsy 194008 194847 132 - . . scaffold550 GLEAN mRNA 195197 195304 0.634785 + . ID=CGI_10012493; scaffold550 WUBlastX LTR_Gypsy 195197 195304 24 - . . scaffold550 GLEAN mRNA 193529 193993 0.634785 + . ID=CGI_10012493; scaffold550 WUBlastX LTR_Gypsy 193529 193993 294 - . . scaffold550 GLEAN mRNA 192469 193500 0.634785 + . ID=CGI_10012493; scaffold550 WUBlastX LTR_Gypsy 192469 193500 304 - . . scaffold550 GLEAN mRNA 197164 197265 0.634785 + . ID=CGI_10012493; scaffold550 TRF Tandem_Repeat 197164 197265 170 + . . scaffold550 GLEAN mRNA 257392 257961 0.999663 - . ID=CGI_10012495; scaffold550 WUBlastX DNA_Academ 257392 258024 275 - . . scaffold550 GLEAN mRNA 257957 257961 0.999663 - . ID=CGI_10012495; scaffold550 WUBlastX DNA_Academ 257957 258205 87 - . . scaffold550 GLEAN mRNA 260564 260869 0.579462 - . ID=CGI_10012496; scaffold550 WUBlastX DNA_Academ 260564 261124 350 - . . scaffold550 GLEAN mRNA 260459 260869 0.579462 - . ID=CGI_10012496; scaffold550 WUBlastX DNA_Academ 260459 261139 231 - . . scaffold1641 GLEAN mRNA 11908 11962 0.965892 + . ID=CGI_10012499; scaffold1641 TRF Tandem_Repeat 11908 11962 65 + . . scaffold1641 GLEAN mRNA 11904 11959 0.965892 + . ID=CGI_10012499; scaffold1641 TRF Tandem_Repeat 11904 11959 71 + . . scaffold1641 GLEAN mRNA 70434 70467 0.332971 + . ID=CGI_10012501; scaffold1641 TRF Tandem_Repeat 70434 70467 68 + . . scaffold1641 GLEAN mRNA 72440 72497 0.332971 + . ID=CGI_10012501; scaffold1641 TRF Tandem_Repeat 72440 72497 109 + . . scaffold1641 GLEAN mRNA 73949 75220 0.332971 + . ID=CGI_10012501; scaffold1641 TRF Tandem_Repeat 73949 75220 2142 + . . scaffold1641 GLEAN mRNA 65402 65552 0.332971 + . ID=CGI_10012501; scaffold1641 TRF Tandem_Repeat 65402 65552 69 + . . scaffold1641 GLEAN mRNA 101436 101462 0.592059 - . ID=CGI_10012502; scaffold1641 TRF Tandem_Repeat 101436 101462 54 + . . scaffold1641 GLEAN mRNA 167669 167778 0.998323 + . ID=CGI_10012504; scaffold1641 TRF Tandem_Repeat 167669 167778 202 + . . scaffold1641 GLEAN mRNA 173194 173287 1 - . ID=CGI_10012505; scaffold1641 TRF Tandem_Repeat 173194 173287 136 + . . scaffold1641 GLEAN mRNA 173478 173597 1 - . ID=CGI_10012505; scaffold1641 TRF Tandem_Repeat 173478 173597 134 + . . scaffold1641 GLEAN mRNA 173724 173813 1 - . ID=CGI_10012505; scaffold1641 TRF Tandem_Repeat 173724 173813 90 + . . scaffold1641 GLEAN mRNA 195329 195775 0.745185 + . ID=CGI_10012507; scaffold1641 TRF Tandem_Repeat 195329 195775 355 + . . scaffold1641 GLEAN mRNA 196494 196552 0.745185 + . ID=CGI_10012507; scaffold1641 TRF Tandem_Repeat 196494 196552 118 + . . scaffold532 GLEAN mRNA 7985 8066 0.967875 - . ID=CGI_10012519; scaffold532 TRF Tandem_Repeat 7985 8066 164 + . . scaffold532 GLEAN mRNA 10139 10176 0.967875 - . ID=CGI_10012519; scaffold532 TRF Tandem_Repeat 10139 10176 67 + . . scaffold532 GLEAN mRNA 16373 16423 0.967875 - . ID=CGI_10012519; scaffold532 TRF Tandem_Repeat 16373 16423 93 + . . scaffold532 GLEAN mRNA 42905 43415 0.759605 + . ID=CGI_10012520; scaffold532 TRF Tandem_Repeat 42905 43415 806 + . . scaffold532 GLEAN mRNA 43621 43770 0.759605 + . ID=CGI_10012520; scaffold532 TRF Tandem_Repeat 43621 43770 205 + . . scaffold532 GLEAN mRNA 44619 44849 0.759605 + . ID=CGI_10012520; scaffold532 TRF Tandem_Repeat 44619 44849 354 + . . scaffold532 GLEAN mRNA 45305 46705 0.759605 + . ID=CGI_10012520; scaffold532 TRF Tandem_Repeat 45305 46705 2349 + . . scaffold532 GLEAN mRNA 45306 46708 0.759605 + . ID=CGI_10012520; scaffold532 TRF Tandem_Repeat 45306 46708 2382 + . . scaffold532 GLEAN mRNA 47081 47488 0.759605 + . ID=CGI_10012520; scaffold532 TRF Tandem_Repeat 47081 47488 238 + . . scaffold532 GLEAN mRNA 47171 47488 0.759605 + . ID=CGI_10012520; scaffold532 TRF Tandem_Repeat 47171 47488 262 + . . scaffold532 GLEAN mRNA 47172 47239 0.759605 + . ID=CGI_10012520; scaffold532 TRF Tandem_Repeat 47172 47239 55 + . . scaffold532 GLEAN mRNA 49607 50013 0.759605 + . ID=CGI_10012520; scaffold532 TRF Tandem_Repeat 49607 50013 642 + . . scaffold532 GLEAN mRNA 51369 52241 0.759605 + . ID=CGI_10012520; scaffold532 TRF Tandem_Repeat 51369 52241 1431 + . . scaffold532 GLEAN mRNA 52503 52741 0.759605 + . ID=CGI_10012520; scaffold532 TRF Tandem_Repeat 52503 52741 218 + . . scaffold532 GLEAN mRNA 103108 103174 0.626081 + . ID=CGI_10012522; scaffold532 TRF Tandem_Repeat 103108 103174 88 + . . scaffold532 GLEAN mRNA 110811 110856 0.626081 + . ID=CGI_10012522; scaffold532 TRF Tandem_Repeat 110811 110856 65 + . . scaffold532 GLEAN mRNA 124827 125144 0.948234 - . ID=CGI_10012525; scaffold532 TRF Tandem_Repeat 124827 125144 451 + . . scaffold532 GLEAN mRNA 125153 125442 0.948234 - . ID=CGI_10012525; scaffold532 TRF Tandem_Repeat 125153 125442 158 + . . scaffold532 GLEAN mRNA 125071 125551 0.948234 - . ID=CGI_10012525; scaffold532 TRF Tandem_Repeat 125071 125551 840 + . . scaffold532 GLEAN mRNA 124961 125497 0.948234 - . ID=CGI_10012525; scaffold532 TRF Tandem_Repeat 124961 125497 216 + . . scaffold532 GLEAN mRNA 126069 126192 0.948234 - . ID=CGI_10012525; scaffold532 TRF Tandem_Repeat 126069 126192 194 + . . scaffold532 GLEAN mRNA 137109 137428 0.948234 - . ID=CGI_10012525; scaffold532 TRF Tandem_Repeat 137109 137428 391 + . . scaffold532 GLEAN mRNA 137109 137471 0.948234 - . ID=CGI_10012525; scaffold532 TRF Tandem_Repeat 137109 137471 418 + . . scaffold532 GLEAN mRNA 161810 162121 0.907096 - . ID=CGI_10012528; scaffold532 TRF Tandem_Repeat 161810 162121 178 + . . scaffold532 GLEAN mRNA 161810 162119 0.907096 - . ID=CGI_10012528; scaffold532 TRF Tandem_Repeat 161810 162119 273 + . . scaffold532 GLEAN mRNA 162552 162816 0.907096 - . ID=CGI_10012528; scaffold532 TRF Tandem_Repeat 162552 162816 125 + . . scaffold532 GLEAN mRNA 162548 162816 0.907096 - . ID=CGI_10012528; scaffold532 TRF Tandem_Repeat 162548 162816 238 + . . scaffold532 GLEAN mRNA 166086 166289 0.907096 - . ID=CGI_10012528; scaffold532 WUBlastX LINE_RTE-X 166086 166289 99 + . . scaffold532 GLEAN mRNA 185917 186179 0.989503 - . ID=CGI_10012531; scaffold532 TRF Tandem_Repeat 185917 186179 445 + . . scaffold532 GLEAN mRNA 186207 186300 0.989503 - . ID=CGI_10012531; scaffold532 TRF Tandem_Repeat 186207 186300 66 + . . scaffold532 GLEAN mRNA 186179 186387 0.989503 - . ID=CGI_10012531; scaffold532 TRF Tandem_Repeat 186179 186387 370 + . . scaffold532 GLEAN mRNA 188915 189008 0.989503 - . ID=CGI_10012531; scaffold532 TRF Tandem_Repeat 188915 189008 52 + . . scaffold532 GLEAN mRNA 188899 189165 0.989503 - . ID=CGI_10012531; scaffold532 TRF Tandem_Repeat 188899 189165 435 + . . scaffold532 GLEAN mRNA 196765 197418 0.991507 + . ID=CGI_10012532; scaffold532 TRF Tandem_Repeat 196765 197418 859 + . . scaffold532 GLEAN mRNA 207777 208601 0.991507 + . ID=CGI_10012532; scaffold532 TRF Tandem_Repeat 207777 208601 1019 + . . scaffold532 GLEAN mRNA 211157 211182 0.991507 + . ID=CGI_10012532; scaffold532 TRF Tandem_Repeat 211157 211182 52 + . . scaffold532 GLEAN mRNA 214976 216844 0.991507 + . ID=CGI_10012532; scaffold532 TRF Tandem_Repeat 214976 216844 2696 + . . scaffold532 GLEAN mRNA 285626 286007 0.998459 - . ID=CGI_10012533; scaffold532 TRF Tandem_Repeat 285626 286007 415 + . . scaffold532 GLEAN mRNA 285751 285883 0.998459 - . ID=CGI_10012533; scaffold532 TRF Tandem_Repeat 285751 285883 92 + . . scaffold532 GLEAN mRNA 278837 281425 0.998459 - . ID=CGI_10012533; scaffold532 WUBlastX RC_Helitron 278837 281425 1365 - . . scaffold532 GLEAN mRNA 281000 284056 0.998459 - . ID=CGI_10012533; scaffold532 WUBlastX RC_Helitron 281000 284056 1892 - . . scaffold532 GLEAN mRNA 279344 284014 0.998459 - . ID=CGI_10012533; scaffold532 WUBlastX RC_Helitron 279344 284014 1444 - . . scaffold43798 GLEAN mRNA 12150 12193 0.990383 - . ID=CGI_10012536; scaffold43798 TRF Tandem_Repeat 12150 12193 88 + . . scaffold43798 GLEAN mRNA 1019 1294 0.990383 - . ID=CGI_10012536; scaffold43798 WUBlastX LINE_L1 1019 1294 20 - . . scaffold43798 GLEAN mRNA 16620 16726 0.990383 - . ID=CGI_10012536; scaffold43798 TRF Tandem_Repeat 16620 16726 92 + . . scaffold43798 GLEAN mRNA 16586 17344 0.990383 - . ID=CGI_10012536; scaffold43798 TRF Tandem_Repeat 16586 17344 282 + . . scaffold43798 GLEAN mRNA 20636 20692 0.990383 - . ID=CGI_10012536; scaffold43798 TRF Tandem_Repeat 20636 20692 75 + . . scaffold43798 GLEAN mRNA 30826 30876 0.990383 - . ID=CGI_10012536; scaffold43798 TRF Tandem_Repeat 30826 30876 102 + . . scaffold43798 GLEAN mRNA 35972 36038 0.990383 - . ID=CGI_10012536; scaffold43798 TRF Tandem_Repeat 35972 36038 89 + . . scaffold43798 GLEAN mRNA 36554 36586 0.990383 - . ID=CGI_10012536; scaffold43798 TRF Tandem_Repeat 36554 36586 57 + . . scaffold43798 GLEAN mRNA 39365 39431 0.990383 - . ID=CGI_10012536; scaffold43798 TRF Tandem_Repeat 39365 39431 89 + . . scaffold43798 GLEAN mRNA 187135 187284 0.592879 - . ID=CGI_10012539; scaffold43798 TRF Tandem_Repeat 187135 187284 88 + . . scaffold43798 GLEAN mRNA 194266 194468 0.592879 - . ID=CGI_10012539; scaffold43798 TRF Tandem_Repeat 194266 194468 388 + . . scaffold43798 GLEAN mRNA 194697 194756 0.592879 - . ID=CGI_10012539; scaffold43798 TRF Tandem_Repeat 194697 194756 102 + . . scaffold43798 GLEAN mRNA 199190 199591 0.592879 - . ID=CGI_10012539; scaffold43798 TRF Tandem_Repeat 199190 199591 717 + . . scaffold43798 GLEAN mRNA 199191 199591 0.592879 - . ID=CGI_10012539; scaffold43798 TRF Tandem_Repeat 199191 199591 743 + . . scaffold43798 GLEAN mRNA 199190 199591 0.592879 - . ID=CGI_10012539; scaffold43798 TRF Tandem_Repeat 199190 199591 717 + . . scaffold43798 GLEAN mRNA 203672 203711 0.592879 - . ID=CGI_10012539; scaffold43798 TRF Tandem_Repeat 203672 203711 71 + . . scaffold43798 GLEAN mRNA 212945 212975 1 + . ID=CGI_10012540; scaffold43798 TRF Tandem_Repeat 212945 212975 62 + . . scaffold43798 GLEAN mRNA 214070 214415 1 + . ID=CGI_10012540; scaffold43798 TRF Tandem_Repeat 214070 214415 575 + . . scaffold43798 GLEAN mRNA 218672 218734 0.651135 - . ID=CGI_10012541; scaffold43798 TRF Tandem_Repeat 218672 218734 126 + . . scaffold43798 GLEAN mRNA 223054 223182 0.651135 - . ID=CGI_10012541; scaffold43798 TRF Tandem_Repeat 223054 223182 88 + . . scaffold43798 GLEAN mRNA 223891 223928 0.651135 - . ID=CGI_10012541; scaffold43798 TRF Tandem_Repeat 223891 223928 76 + . . scaffold43798 GLEAN mRNA 224315 224360 0.651135 - . ID=CGI_10012541; scaffold43798 TRF Tandem_Repeat 224315 224360 92 + . . scaffold43798 GLEAN mRNA 256732 256768 1 + . ID=CGI_10012542; scaffold43798 TRF Tandem_Repeat 256732 256768 74 + . . scaffold43798 GLEAN mRNA 257076 257130 1 + . ID=CGI_10012542; scaffold43798 TRF Tandem_Repeat 257076 257130 110 + . . scaffold43798 GLEAN mRNA 275823 275868 0.999622 - . ID=CGI_10012543; scaffold43798 TRF Tandem_Repeat 275823 275868 83 + . . scaffold43798 GLEAN mRNA 279100 279181 0.999622 - . ID=CGI_10012543; scaffold43798 TRF Tandem_Repeat 279100 279181 157 + . . scaffold43798 GLEAN mRNA 288666 288805 0.59158 + . ID=CGI_10012544; scaffold43798 TRF Tandem_Repeat 288666 288805 226 + . . scaffold43798 GLEAN mRNA 289837 289885 0.59158 + . ID=CGI_10012544; scaffold43798 TRF Tandem_Repeat 289837 289885 98 + . . scaffold43798 GLEAN mRNA 294806 294876 0.59158 + . ID=CGI_10012544; scaffold43798 TRF Tandem_Repeat 294806 294876 124 + . . scaffold43798 GLEAN mRNA 295942 295970 0.59158 + . ID=CGI_10012544; scaffold43798 TRF Tandem_Repeat 295942 295970 58 + . . scaffold43798 GLEAN mRNA 300618 300676 0.59158 + . ID=CGI_10012544; scaffold43798 TRF Tandem_Repeat 300618 300676 118 + . . scaffold43798 GLEAN mRNA 305691 306172 0.59158 + . ID=CGI_10012544; scaffold43798 TRF Tandem_Repeat 305691 306172 489 + . . scaffold43798 GLEAN mRNA 312595 312631 0.882457 - . ID=CGI_10012545; scaffold43798 TRF Tandem_Repeat 312595 312631 74 + . . scaffold43798 GLEAN mRNA 315865 315907 0.882457 - . ID=CGI_10012545; scaffold43798 TRF Tandem_Repeat 315865 315907 86 + . . scaffold43798 GLEAN mRNA 318934 319041 0.882457 - . ID=CGI_10012545; scaffold43798 TRF Tandem_Repeat 318934 319041 139 + . . scaffold43804 GLEAN mRNA 26414 26716 0.649698 + . ID=CGI_10012548; scaffold43804 WUBlastX LINE_L1-Tx1 26414 26716 106 - . . scaffold43804 GLEAN mRNA 107024 107092 0.604708 + . ID=CGI_10012550; scaffold43804 TRF Tandem_Repeat 107024 107092 138 + . . scaffold43804 GLEAN mRNA 117941 117972 0.893185 + . ID=CGI_10012551; scaffold43804 TRF Tandem_Repeat 117941 117972 57 + . . scaffold43804 GLEAN mRNA 137449 137736 0.583667 - . ID=CGI_10012553; scaffold43804 TRF Tandem_Repeat 137449 137736 183 + . . scaffold43804 GLEAN mRNA 137831 137927 0.583667 - . ID=CGI_10012553; scaffold43804 TRF Tandem_Repeat 137831 137927 88 + . . scaffold43804 GLEAN mRNA 140983 141046 0.583667 - . ID=CGI_10012553; scaffold43804 TRF Tandem_Repeat 140983 141046 112 + . . scaffold43804 GLEAN mRNA 171386 171976 1 - . ID=CGI_10012556; scaffold43804 WUBlastX LINE_CR1 171386 171976 43 - . . scaffold43804 GLEAN mRNA 192304 192679 0.999351 + . ID=CGI_10012557; scaffold43804 TRF Tandem_Repeat 192304 192679 474 + . . scaffold43804 GLEAN mRNA 193164 193955 0.999351 + . ID=CGI_10012557; scaffold43804 TRF Tandem_Repeat 193164 193955 1142 + . . scaffold43804 GLEAN mRNA 208107 208580 0.544849 - . ID=CGI_10012559; scaffold43804 WUBlastX LINE_L2 208107 208580 91 + . . scaffold43804 GLEAN mRNA 214528 214552 0.544849 - . ID=CGI_10012559; scaffold43804 TRF Tandem_Repeat 214528 214552 50 + . . scaffold43804 GLEAN mRNA 213118 214191 0.544849 - . ID=CGI_10012559; scaffold43804 WUBlastX LINE_RTE-X 213118 214191 298 + . . scaffold43804 GLEAN mRNA 241516 241571 0.991965 - . ID=CGI_10012562; scaffold43804 TRF Tandem_Repeat 241516 241571 112 + . . scaffold43804 GLEAN mRNA 244871 244925 0.991965 - . ID=CGI_10012562; scaffold43804 TRF Tandem_Repeat 244871 244925 101 + . . scaffold336 GLEAN mRNA 110607 110644 0.483603 + . ID=CGI_10012565; scaffold336 TRF Tandem_Repeat 110607 110644 67 + . . scaffold336 GLEAN mRNA 119767 120944 0.483603 + . ID=CGI_10012565; scaffold336 TRF Tandem_Repeat 119767 120944 1263 + . . scaffold336 GLEAN mRNA 121627 121913 0.483603 + . ID=CGI_10012565; scaffold336 TRF Tandem_Repeat 121627 121913 409 + . . scaffold336 GLEAN mRNA 123769 123798 0.483603 + . ID=CGI_10012565; scaffold336 TRF Tandem_Repeat 123769 123798 51 + . . scaffold336 GLEAN mRNA 123812 123836 0.483603 + . ID=CGI_10012565; scaffold336 TRF Tandem_Repeat 123812 123836 50 + . . scaffold336 GLEAN mRNA 134773 134805 0.483603 + . ID=CGI_10012565; scaffold336 TRF Tandem_Repeat 134773 134805 66 + . . scaffold336 GLEAN mRNA 140110 140427 0.483603 + . ID=CGI_10012565; scaffold336 TRF Tandem_Repeat 140110 140427 385 + . . scaffold336 GLEAN mRNA 141420 141634 0.483603 + . ID=CGI_10012565; scaffold336 TRF Tandem_Repeat 141420 141634 351 + . . scaffold336 GLEAN mRNA 143910 143935 0.483603 + . ID=CGI_10012565; scaffold336 TRF Tandem_Repeat 143910 143935 52 + . . scaffold336 GLEAN mRNA 143949 143991 0.483603 + . ID=CGI_10012565; scaffold336 TRF Tandem_Repeat 143949 143991 86 + . . scaffold336 GLEAN mRNA 146013 146059 0.483603 + . ID=CGI_10012565; scaffold336 TRF Tandem_Repeat 146013 146059 94 + . . scaffold336 GLEAN mRNA 165383 166067 1 - . ID=CGI_10012567; scaffold336 TRF Tandem_Repeat 165383 166067 752 + . . scaffold336 GLEAN mRNA 169027 169070 1 - . ID=CGI_10012567; scaffold336 TRF Tandem_Repeat 169027 169070 88 + . . scaffold336 GLEAN mRNA 169209 169739 1 - . ID=CGI_10012567; scaffold336 WUBlastX LINE_RTE-X 169209 169739 178 + . . scaffold336 GLEAN mRNA 169721 169804 1 - . ID=CGI_10012567; scaffold336 WUBlastX LINE_RTE-X 169721 169804 36 + . . scaffold336 GLEAN mRNA 198449 198513 0.66246 + . ID=CGI_10012568; scaffold336 TRF Tandem_Repeat 198449 198513 112 + . . scaffold336 GLEAN mRNA 202962 203799 0.66246 + . ID=CGI_10012568; scaffold336 TRF Tandem_Repeat 202962 203799 754 + . . scaffold336 GLEAN mRNA 199104 199547 0.66246 + . ID=CGI_10012568; scaffold336 WUBlastX LINE_L2 199104 199547 133 - . . scaffold336 GLEAN mRNA 211862 211983 1 - . ID=CGI_10012569; scaffold336 TRF Tandem_Repeat 211862 211983 217 + . . scaffold336 GLEAN mRNA 216114 216233 1 - . ID=CGI_10012569; scaffold336 WUBlastX LINE_RTE-X 216114 216233 50 - . . scaffold336 GLEAN mRNA 216723 217247 1 - . ID=CGI_10012569; scaffold336 WUBlastX LINE_CR1 216723 217247 77 - . . scaffold336 GLEAN mRNA 216957 217439 1 - . ID=CGI_10012569; scaffold336 WUBlastX LINE_CR1 216957 217439 44 - . . scaffold336 GLEAN mRNA 216939 217262 1 - . ID=CGI_10012569; scaffold336 WUBlastX LINE_L2 216939 217262 168 - . . scaffold336 GLEAN mRNA 217513 217590 1 - . ID=CGI_10012569; scaffold336 WUBlastX LINE_CR1-L2 217513 217590 25 - . . scaffold336 GLEAN mRNA 216227 216289 1 - . ID=CGI_10012569; scaffold336 WUBlastX LINE_L2 216227 216289 29 - . . scaffold336 GLEAN mRNA 216135 216251 1 - . ID=CGI_10012569; scaffold336 WUBlastX LINE_RTE-X 216135 216251 49 - . . scaffold336 GLEAN mRNA 216227 216301 1 - . ID=CGI_10012569; scaffold336 WUBlastX LINE_L2 216227 216301 28 - . . scaffold336 GLEAN mRNA 216807 217226 1 - . ID=CGI_10012569; scaffold336 WUBlastX LINE_CR1 216807 217226 89 - . . scaffold336 GLEAN mRNA 216933 217328 1 - . ID=CGI_10012569; scaffold336 WUBlastX LINE_CR1 216933 217328 109 - . . scaffold336 GLEAN mRNA 215683 216147 1 - . ID=CGI_10012569; scaffold336 WUBlastX LINE_RTE-X 215683 216147 62 - . . scaffold336 GLEAN mRNA 216424 216585 1 - . ID=CGI_10012569; scaffold336 WUBlastX LINE_RTE-X 216424 216585 36 + . . scaffold336 GLEAN mRNA 216305 216421 1 - . ID=CGI_10012569; scaffold336 WUBlastX LINE_RTE-X 216305 216421 27 + . . scaffold336 GLEAN mRNA 232229 232328 0.122362 + . ID=CGI_10012571; scaffold336 TRF Tandem_Repeat 232229 232328 87 + . . scaffold336 GLEAN mRNA 259073 259123 0.999573 - . ID=CGI_10012572; scaffold336 TRF Tandem_Repeat 259073 259123 102 + . . scaffold336 GLEAN mRNA 259073 259123 0.998507 + . ID=CGI_10012573; scaffold336 TRF Tandem_Repeat 259073 259123 102 + . . scaffold336 GLEAN mRNA 287586 287660 0.999371 - . ID=CGI_10012575; scaffold336 TRF Tandem_Repeat 287586 287660 150 + . . scaffold336 GLEAN mRNA 287841 287925 0.999371 - . ID=CGI_10012575; scaffold336 TRF Tandem_Repeat 287841 287925 152 + . . scaffold336 GLEAN mRNA 301104 301137 0.999997 - . ID=CGI_10012578; scaffold336 TRF Tandem_Repeat 301104 301137 68 + . . scaffold336 GLEAN mRNA 318565 318603 0.801624 - . ID=CGI_10012580; scaffold336 TRF Tandem_Repeat 318565 318603 78 + . . scaffold336 GLEAN mRNA 318621 318660 0.801624 - . ID=CGI_10012580; scaffold336 TRF Tandem_Repeat 318621 318660 80 + . . scaffold1585 GLEAN mRNA 7318 7343 0.999999 - . ID=CGI_10012582; scaffold1585 TRF Tandem_Repeat 7318 7343 52 + . . scaffold1585 GLEAN mRNA 7384 7599 0.999999 - . ID=CGI_10012582; scaffold1585 WUBlastX LINE_RTE-X 7384 7599 71 + . . scaffold1585 GLEAN mRNA 7399 7662 0.999999 - . ID=CGI_10012582; scaffold1585 WUBlastX LINE_RTE-X 7399 7662 52 + . . scaffold1585 GLEAN mRNA 31387 31448 0.934141 - . ID=CGI_10012585; scaffold1585 TRF Tandem_Repeat 31387 31448 115 + . . scaffold1585 GLEAN mRNA 53761 54121 0.392655 - . ID=CGI_10012588; scaffold1585 TRF Tandem_Repeat 53761 54121 656 + . . scaffold1585 GLEAN mRNA 61158 61349 0.392655 - . ID=CGI_10012588; scaffold1585 TRF Tandem_Repeat 61158 61349 357 + . . scaffold1585 GLEAN mRNA 62860 62889 0.392655 - . ID=CGI_10012588; scaffold1585 TRF Tandem_Repeat 62860 62889 60 + . . scaffold1585 GLEAN mRNA 72897 72941 0.392655 - . ID=CGI_10012588; scaffold1585 TRF Tandem_Repeat 72897 72941 90 + . . scaffold1585 GLEAN mRNA 67652 68137 0.392655 - . ID=CGI_10012588; scaffold1585 WUBlastX LINE_RTE-X 67652 68137 99 + . . scaffold1585 GLEAN mRNA 98211 98253 0.975462 + . ID=CGI_10012589; scaffold1585 TRF Tandem_Repeat 98211 98253 50 + . . scaffold1585 GLEAN mRNA 98425 98466 0.975462 + . ID=CGI_10012589; scaffold1585 TRF Tandem_Repeat 98425 98466 50 + . . scaffold1585 GLEAN mRNA 106435 106551 0.729329 - . ID=CGI_10012590; scaffold1585 TRF Tandem_Repeat 106435 106551 81 + . . scaffold1585 GLEAN mRNA 106445 106517 0.729329 - . ID=CGI_10012590; scaffold1585 TRF Tandem_Repeat 106445 106517 96 + . . scaffold1585 GLEAN mRNA 106435 106551 0.729329 - . ID=CGI_10012590; scaffold1585 TRF Tandem_Repeat 106435 106551 99 + . . scaffold1585 GLEAN mRNA 107761 107826 0.729329 - . ID=CGI_10012590; scaffold1585 TRF Tandem_Repeat 107761 107826 132 + . . scaffold1585 GLEAN mRNA 145496 145606 0.650787 + . ID=CGI_10012592; scaffold1585 TRF Tandem_Repeat 145496 145606 91 + . . scaffold1585 GLEAN mRNA 145497 145559 0.650787 + . ID=CGI_10012592; scaffold1585 TRF Tandem_Repeat 145497 145559 63 + . . scaffold1585 GLEAN mRNA 163197 163703 1 + . ID=CGI_10012593; scaffold1585 TRF Tandem_Repeat 163197 163703 892 + . . scaffold1585 GLEAN mRNA 165635 165713 1 + . ID=CGI_10012593; scaffold1585 TRF Tandem_Repeat 165635 165713 158 + . . scaffold1585 GLEAN mRNA 173740 173865 0.997972 + . ID=CGI_10012594; scaffold1585 WUBlastX LINE_L1-Tx1 173740 173865 36 - . . scaffold1585 GLEAN mRNA 198875 198970 1 - . ID=CGI_10012595; scaffold1585 TRF Tandem_Repeat 198875 198970 124 + . . scaffold1585 GLEAN mRNA 318128 318158 1 - . ID=CGI_10012599; scaffold1585 TRF Tandem_Repeat 318128 318158 53 + . . scaffold1585 GLEAN mRNA 320459 320495 1 - . ID=CGI_10012599; scaffold1585 TRF Tandem_Repeat 320459 320495 74 + . . scaffold1585 GLEAN mRNA 320714 320988 1 - . ID=CGI_10012599; scaffold1585 TRF Tandem_Repeat 320714 320988 266 + . . scaffold1585 GLEAN mRNA 321056 321081 1 - . ID=CGI_10012599; scaffold1585 TRF Tandem_Repeat 321056 321081 52 + . . scaffold186 GLEAN mRNA 23019 23354 0.349537 + . ID=CGI_10012601; scaffold186 WUBlastX DNA_Harbinger 22971 23354 85 + . . scaffold186 GLEAN mRNA 23578 23826 0.349537 + . ID=CGI_10012601; scaffold186 WUBlastX DNA_Harbinger 23578 23826 219 + . . scaffold186 GLEAN mRNA 24112 24330 0.349537 + . ID=CGI_10012601; scaffold186 WUBlastX DNA_Harbinger 24112 24330 67 + . . scaffold186 GLEAN mRNA 26264 26612 0.366701 + . ID=CGI_10012602; scaffold186 WUBlastX DNA_Kolobok-Hyd 26264 27292 26 + . . scaffold186 GLEAN mRNA 26381 26437 0.366701 + . ID=CGI_10012602; scaffold186 WUBlastX DNA_Kolobok-Hyd 26381 26437 41 + . . scaffold186 GLEAN mRNA 26567 26612 0.366701 + . ID=CGI_10012602; scaffold186 WUBlastX DNA_Kolobok-Hyd 26567 26884 36 + . . scaffold186 GLEAN mRNA 26657 27292 0.617824 + . ID=CGI_10012603; scaffold186 WUBlastX DNA_Kolobok-Hyd 26264 27292 26 + . . scaffold186 GLEAN mRNA 26657 26884 0.617824 + . ID=CGI_10012603; scaffold186 WUBlastX DNA_Kolobok-Hyd 26567 26884 36 + . . scaffold186 GLEAN mRNA 50202 50260 0.980316 + . ID=CGI_10012605; scaffold186 TRF Tandem_Repeat 50202 50260 109 + . . scaffold186 GLEAN mRNA 50202 50256 0.980316 + . ID=CGI_10012605; scaffold186 TRF Tandem_Repeat 50202 50256 65 + . . scaffold186 GLEAN mRNA 50268 51059 0.980316 + . ID=CGI_10012605; scaffold186 TRF Tandem_Repeat 50268 51059 1107 + . . scaffold186 GLEAN mRNA 57792 57827 0.788177 + . ID=CGI_10012606; scaffold186 TRF Tandem_Repeat 57792 57827 56 + . . scaffold186 GLEAN mRNA 67042 67083 0.788177 + . ID=CGI_10012606; scaffold186 TRF Tandem_Repeat 67042 67083 68 + . . scaffold186 GLEAN mRNA 75493 75547 0.841771 + . ID=CGI_10012607; scaffold186 TRF Tandem_Repeat 75493 75547 110 + . . scaffold186 GLEAN mRNA 76460 76546 0.841771 + . ID=CGI_10012607; scaffold186 TRF Tandem_Repeat 76460 76546 140 + . . scaffold186 GLEAN mRNA 92909 92936 0.529783 + . ID=CGI_10012609; scaffold186 TRF Tandem_Repeat 92909 92936 56 + . . scaffold186 GLEAN mRNA 116310 116369 0.529783 + . ID=CGI_10012609; scaffold186 TRF Tandem_Repeat 116310 116369 68 + . . scaffold186 GLEAN mRNA 116316 116380 0.529783 + . ID=CGI_10012609; scaffold186 TRF Tandem_Repeat 116316 116380 61 + . . scaffold186 GLEAN mRNA 116310 116378 0.529783 + . ID=CGI_10012609; scaffold186 TRF Tandem_Repeat 116310 116378 96 + . . scaffold186 GLEAN mRNA 116298 116366 0.529783 + . ID=CGI_10012609; scaffold186 TRF Tandem_Repeat 116298 116366 111 + . . scaffold186 GLEAN mRNA 178156 178187 0.7422 + . ID=CGI_10012613; scaffold186 TRF Tandem_Repeat 178156 178187 64 + . . scaffold186 GLEAN mRNA 230739 231161 0.99998 + . ID=CGI_10012615; scaffold186 WUBlastX DNA_TcMar-Tc2 230739 231161 120 + . . scaffold186 GLEAN mRNA 230631 231107 0.99998 + . ID=CGI_10012615; scaffold186 WUBlastX DNA_TcMar-Tc2 230631 231107 107 + . . scaffold186 GLEAN mRNA 240584 240847 0.999343 - . ID=CGI_10012616; scaffold186 WUBlastX LINE_L1-Tx1 240584 240847 23 + . . scaffold186 GLEAN mRNA 230739 231161 0.999343 - . ID=CGI_10012616; scaffold186 WUBlastX DNA_TcMar-Tc2 230739 231161 120 + . . scaffold186 GLEAN mRNA 230631 231107 0.999343 - . ID=CGI_10012616; scaffold186 WUBlastX DNA_TcMar-Tc2 230631 231107 107 + . . scaffold186 GLEAN mRNA 249637 249679 0.999343 - . ID=CGI_10012616; scaffold186 TRF Tandem_Repeat 249637 249679 54 + . . scaffold186 GLEAN mRNA 315426 315498 0.999674 - . ID=CGI_10012618; scaffold186 TRF Tandem_Repeat 315426 315498 146 + . . scaffold186 GLEAN mRNA 317882 317914 0.999674 - . ID=CGI_10012618; scaffold186 TRF Tandem_Repeat 317882 317914 66 + . . scaffold186 GLEAN mRNA 319791 320800 0.999674 - . ID=CGI_10012618; scaffold186 TRF Tandem_Repeat 319791 320800 1036 + . . scaffold186 GLEAN mRNA 326247 326343 0.999674 - . ID=CGI_10012618; scaffold186 TRF Tandem_Repeat 326247 326343 187 + . . scaffold186 GLEAN mRNA 326649 326711 0.999674 - . ID=CGI_10012618; scaffold186 TRF Tandem_Repeat 326649 326711 126 + . . scaffold186 GLEAN mRNA 319791 320800 0.999376 + . ID=CGI_10012619; scaffold186 TRF Tandem_Repeat 319791 320800 1036 + . . scaffold279 GLEAN mRNA 72111 72155 1 - . ID=CGI_10012621; scaffold279 TRF Tandem_Repeat 72111 72155 60 + . . scaffold279 GLEAN mRNA 72110 72155 1 - . ID=CGI_10012621; scaffold279 TRF Tandem_Repeat 72110 72155 65 + . . scaffold279 GLEAN mRNA 73878 73915 1 - . ID=CGI_10012621; scaffold279 TRF Tandem_Repeat 73878 73915 76 + . . scaffold279 GLEAN mRNA 82495 82544 1 - . ID=CGI_10012621; scaffold279 TRF Tandem_Repeat 82495 82544 100 + . . scaffold279 GLEAN mRNA 109411 109504 0.999351 + . ID=CGI_10012623; scaffold279 TRF Tandem_Repeat 109411 109504 127 + . . scaffold279 GLEAN mRNA 109695 109814 0.999351 + . ID=CGI_10012623; scaffold279 TRF Tandem_Repeat 109695 109814 134 + . . scaffold279 GLEAN mRNA 109941 110029 0.999351 + . ID=CGI_10012623; scaffold279 TRF Tandem_Repeat 109941 110029 72 + . . scaffold279 GLEAN mRNA 155084 155112 1 - . ID=CGI_10012627; scaffold279 TRF Tandem_Repeat 155084 155112 58 + . . scaffold279 GLEAN mRNA 158752 158807 1 - . ID=CGI_10012627; scaffold279 TRF Tandem_Repeat 158752 158807 112 + . . scaffold279 GLEAN mRNA 159318 159379 1 - . ID=CGI_10012627; scaffold279 TRF Tandem_Repeat 159318 159379 106 + . . scaffold279 GLEAN mRNA 210835 210880 0.999676 - . ID=CGI_10012629; scaffold279 TRF Tandem_Repeat 210835 210880 67 + . . scaffold279 GLEAN mRNA 229266 229300 0.873283 + . ID=CGI_10012630; scaffold279 TRF Tandem_Repeat 229266 229300 70 + . . scaffold279 GLEAN mRNA 236254 236493 0.873283 + . ID=CGI_10012630; scaffold279 TRF Tandem_Repeat 236254 236493 338 + . . scaffold279 GLEAN mRNA 238835 239560 0.873283 + . ID=CGI_10012630; scaffold279 TRF Tandem_Repeat 238835 239560 517 + . . scaffold279 GLEAN mRNA 238840 239560 0.873283 + . ID=CGI_10012630; scaffold279 TRF Tandem_Repeat 238840 239560 586 + . . scaffold279 GLEAN mRNA 238902 239560 0.873283 + . ID=CGI_10012630; scaffold279 TRF Tandem_Repeat 238902 239560 605 + . . scaffold279 GLEAN mRNA 242644 242963 0.873283 + . ID=CGI_10012630; scaffold279 TRF Tandem_Repeat 242644 242963 529 + . . scaffold279 GLEAN mRNA 242504 242965 0.873283 + . ID=CGI_10012630; scaffold279 TRF Tandem_Repeat 242504 242965 504 + . . scaffold279 GLEAN mRNA 246040 246092 0.873283 + . ID=CGI_10012630; scaffold279 TRF Tandem_Repeat 246040 246092 88 + . . scaffold279 GLEAN mRNA 299178 299233 0.998029 + . ID=CGI_10012633; scaffold279 TRF Tandem_Repeat 299178 299233 71 + . . scaffold279 GLEAN mRNA 299170 299229 0.998029 + . ID=CGI_10012633; scaffold279 TRF Tandem_Repeat 299170 299229 66 + . . scaffold279 GLEAN mRNA 322022 322104 0.859933 - . ID=CGI_10012637; scaffold279 TRF Tandem_Repeat 322022 322104 148 + . . scaffold279 GLEAN mRNA 323149 323222 0.859933 - . ID=CGI_10012637; scaffold279 TRF Tandem_Repeat 323149 323222 148 + . . scaffold748 GLEAN mRNA 17858 18340 0.999372 - . ID=CGI_10012638; scaffold748 WUBlastX LTR_Pao 16406 18340 384 - . . scaffold748 GLEAN mRNA 169350 170786 0.999394 - . ID=CGI_10012643; scaffold748 WUBlastX DNA_IS4EU 169350 170786 832 - . . scaffold748 GLEAN mRNA 180258 180299 0.999949 + . ID=CGI_10012644; scaffold748 TRF Tandem_Repeat 180258 180299 50 + . . scaffold748 GLEAN mRNA 182125 182571 0.999949 + . ID=CGI_10012644; scaffold748 TRF Tandem_Repeat 182125 182571 743 + . . scaffold748 GLEAN mRNA 213616 214208 0.763553 + . ID=CGI_10012647; scaffold748 TRF Tandem_Repeat 213616 214208 1006 + . . scaffold748 GLEAN mRNA 229667 229845 1 + . ID=CGI_10012648; scaffold748 TRF Tandem_Repeat 229667 229845 304 + . . scaffold748 GLEAN mRNA 229861 230036 1 + . ID=CGI_10012648; scaffold748 TRF Tandem_Repeat 229861 230036 286 + . . scaffold748 GLEAN mRNA 229336 229650 1 + . ID=CGI_10012648; scaffold748 TRF Tandem_Repeat 229336 229650 495 + . . scaffold748 GLEAN mRNA 229336 230036 1 + . ID=CGI_10012648; scaffold748 TRF Tandem_Repeat 229336 230036 652 + . . scaffold748 GLEAN mRNA 229336 230036 1 + . ID=CGI_10012648; scaffold748 TRF Tandem_Repeat 229336 230036 652 + . . scaffold1633 GLEAN mRNA 35431 35493 0.999673 + . ID=CGI_10012653; scaffold1633 TRF Tandem_Repeat 35431 35493 94 + . . scaffold1633 GLEAN mRNA 38972 39039 0.999673 + . ID=CGI_10012653; scaffold1633 TRF Tandem_Repeat 38972 39039 136 + . . scaffold1633 GLEAN mRNA 259941 259990 0.989981 + . ID=CGI_10012655; scaffold1633 TRF Tandem_Repeat 259941 259990 59 + . . scaffold1633 GLEAN mRNA 261505 261569 0.989981 + . ID=CGI_10012655; scaffold1633 TRF Tandem_Repeat 261505 261569 130 + . . scaffold1633 GLEAN mRNA 262032 263002 0.989981 + . ID=CGI_10012655; scaffold1633 TRF Tandem_Repeat 262032 263002 1377 + . . scaffold1066 GLEAN mRNA 5455 5484 0.928703 - . ID=CGI_10012657; scaffold1066 TRF Tandem_Repeat 5455 5484 60 + . . scaffold1066 GLEAN mRNA 5987 6268 0.928703 - . ID=CGI_10012657; scaffold1066 WUBlastX DNA_Crypton 5987 6268 100 - . . scaffold1066 GLEAN mRNA 172498 172539 0.572431 + . ID=CGI_10012659; scaffold1066 TRF Tandem_Repeat 172498 172539 84 + . . scaffold1066 GLEAN mRNA 176826 177557 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Ngaro 176826 177557 260 - . . scaffold1066 GLEAN mRNA 175750 175944 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Copia 175750 175944 37 + . . scaffold1066 GLEAN mRNA 179377 179772 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Ngaro 179377 179772 55 - . . scaffold1066 GLEAN mRNA 173339 175291 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Gypsy 173339 175291 1282 + . . scaffold1066 GLEAN mRNA 169555 170643 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Gypsy 169555 170643 365 + . . scaffold1066 GLEAN mRNA 177511 177648 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Ngaro 177511 177648 21 - . . scaffold1066 GLEAN mRNA 170263 170712 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Gypsy 170263 170712 190 + . . scaffold1066 GLEAN mRNA 179720 179902 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Ngaro 179720 179902 42 - . . scaffold1066 GLEAN mRNA 169951 170910 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Gypsy 169951 170910 150 + . . scaffold1066 GLEAN mRNA 169024 169806 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Gypsy 169024 169806 70 + . . scaffold1066 GLEAN mRNA 175234 175806 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Gypsy-Cigr 175234 175806 333 + . . scaffold1066 GLEAN mRNA 177666 179297 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Ngaro 177666 179297 817 - . . scaffold1066 GLEAN mRNA 169357 170625 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Gypsy 169357 170625 176 + . . scaffold1066 GLEAN mRNA 179311 179730 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Ngaro 179311 179730 25 - . . scaffold1066 GLEAN mRNA 168620 169012 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Gypsy-Cigr 168620 169012 131 + . . scaffold1066 GLEAN mRNA 179464 179769 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Ngaro 179464 179769 129 - . . scaffold1066 GLEAN mRNA 175237 175908 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Gypsy 175237 175908 203 + . . scaffold1066 GLEAN mRNA 169258 169797 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Copia 169258 169797 71 + . . scaffold1066 GLEAN mRNA 173189 174151 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Gypsy 173189 174151 342 + . . scaffold1066 GLEAN mRNA 180934 181274 0.572431 + . ID=CGI_10012659; scaffold1066 TRF Tandem_Repeat 180934 181274 233 + . . scaffold1066 GLEAN mRNA 193109 193310 0.572431 + . ID=CGI_10012659; scaffold1066 TRF Tandem_Repeat 193109 193310 181 + . . scaffold1066 GLEAN mRNA 193926 194099 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Pao 193926 194099 23 - . . scaffold1066 GLEAN mRNA 192745 193107 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Pao 192745 193107 80 - . . scaffold1066 GLEAN mRNA 193367 193852 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Pao 193367 193852 129 - . . scaffold1066 GLEAN mRNA 275772 275856 0.725908 + . ID=CGI_10012662; scaffold1066 TRF Tandem_Repeat 275772 275856 131 + . . scaffold1080 GLEAN mRNA 7519 7558 0.637113 - . ID=CGI_10012664; scaffold1080 TRF Tandem_Repeat 7519 7558 71 + . . scaffold1080 GLEAN mRNA 7558 7588 0.637113 - . ID=CGI_10012664; scaffold1080 TRF Tandem_Repeat 7558 7588 62 + . . scaffold1080 GLEAN mRNA 9004 9070 0.637113 - . ID=CGI_10012664; scaffold1080 TRF Tandem_Repeat 9004 9070 71 + . . scaffold1080 GLEAN mRNA 12155 12206 0.637113 - . ID=CGI_10012664; scaffold1080 TRF Tandem_Repeat 12155 12206 77 + . . scaffold1080 GLEAN mRNA 23061 23104 0.637113 - . ID=CGI_10012664; scaffold1080 TRF Tandem_Repeat 23061 23104 63 + . . scaffold1080 GLEAN mRNA 23071 23100 0.637113 - . ID=CGI_10012664; scaffold1080 TRF Tandem_Repeat 23071 23100 53 + . . scaffold1080 GLEAN mRNA 24884 25116 0.637113 - . ID=CGI_10012664; scaffold1080 TRF Tandem_Repeat 24884 25116 339 + . . scaffold1080 GLEAN mRNA 24884 25116 0.637113 - . ID=CGI_10012664; scaffold1080 TRF Tandem_Repeat 24884 25116 389 + . . scaffold1080 GLEAN mRNA 25969 26221 0.637113 - . ID=CGI_10012664; scaffold1080 TRF Tandem_Repeat 25969 26221 359 + . . scaffold1080 GLEAN mRNA 77391 77732 0.619798 + . ID=CGI_10012668; scaffold1080 TRF Tandem_Repeat 77391 77732 276 + . . scaffold1080 GLEAN mRNA 77970 78028 0.619798 + . ID=CGI_10012668; scaffold1080 TRF Tandem_Repeat 77970 78028 118 + . . scaffold1080 GLEAN mRNA 89510 89559 0.636854 - . ID=CGI_10012670; scaffold1080 TRF Tandem_Repeat 89510 89559 91 + . . scaffold1080 GLEAN mRNA 112107 112172 1 + . ID=CGI_10012671; scaffold1080 TRF Tandem_Repeat 112107 112172 80 + . . scaffold1080 GLEAN mRNA 112107 112172 1 + . ID=CGI_10012671; scaffold1080 TRF Tandem_Repeat 112107 112172 98 + . . scaffold1080 GLEAN mRNA 117651 117832 1 + . ID=CGI_10012671; scaffold1080 TRF Tandem_Repeat 117651 117832 292 + . . scaffold1080 GLEAN mRNA 117659 117840 1 + . ID=CGI_10012671; scaffold1080 TRF Tandem_Repeat 117659 117840 291 + . . scaffold1080 GLEAN mRNA 117651 117840 1 + . ID=CGI_10012671; scaffold1080 TRF Tandem_Repeat 117651 117840 371 + . . scaffold1080 GLEAN mRNA 118269 118646 1 + . ID=CGI_10012671; scaffold1080 TRF Tandem_Repeat 118269 118646 575 + . . scaffold1080 GLEAN mRNA 120122 120453 1 + . ID=CGI_10012671; scaffold1080 TRF Tandem_Repeat 120122 120453 391 + . . scaffold1080 GLEAN mRNA 148571 148651 0.995421 + . ID=CGI_10012673; scaffold1080 WUBlastX DNA_TcMar-Tc2 148436 148651 40 + . . scaffold1080 GLEAN mRNA 149001 149237 0.995421 + . ID=CGI_10012673; scaffold1080 WUBlastX DNA_TcMar-Tc2 149001 149237 31 + . . scaffold1080 GLEAN mRNA 149064 149240 0.995421 + . ID=CGI_10012673; scaffold1080 WUBlastX DNA_TcMar-Tc2 149064 149240 82 + . . scaffold1080 GLEAN mRNA 263365 264198 0.591325 - . ID=CGI_10012678; scaffold1080 WUBlastX DNA_En-Spm 263365 264198 25 - . . scaffold1080 GLEAN mRNA 262475 263020 0.591325 - . ID=CGI_10012678; scaffold1080 WUBlastX DNA_En-Spm 262475 263020 169 - . . scaffold1080 GLEAN mRNA 264207 264248 0.591325 - . ID=CGI_10012678; scaffold1080 WUBlastX DNA_En-Spm 264207 264248 28 - . . scaffold1080 GLEAN mRNA 263131 264048 0.591325 - . ID=CGI_10012678; scaffold1080 WUBlastX DNA_En-Spm 263131 264048 255 - . . scaffold1080 GLEAN mRNA 262091 263065 0.591325 - . ID=CGI_10012678; scaffold1080 WUBlastX DNA_En-Spm 262091 263065 138 - . . scaffold1080 GLEAN mRNA 280054 281090 0.693138 - . ID=CGI_10012679; scaffold1080 TRF Tandem_Repeat 280054 281090 1723 + . . scaffold1080 GLEAN mRNA 282930 283235 0.693138 - . ID=CGI_10012679; scaffold1080 TRF Tandem_Repeat 282930 283235 513 + . . scaffold1080 GLEAN mRNA 283256 284111 0.693138 - . ID=CGI_10012679; scaffold1080 TRF Tandem_Repeat 283256 284111 416 + . . scaffold1080 GLEAN mRNA 283303 283742 0.693138 - . ID=CGI_10012679; scaffold1080 TRF Tandem_Repeat 283303 283742 283 + . . scaffold1080 GLEAN mRNA 283840 283909 0.693138 - . ID=CGI_10012679; scaffold1080 TRF Tandem_Repeat 283840 283909 60 + . . scaffold1080 GLEAN mRNA 283894 284135 0.693138 - . ID=CGI_10012679; scaffold1080 TRF Tandem_Repeat 283894 284135 322 + . . scaffold1080 GLEAN mRNA 286438 286488 0.693138 - . ID=CGI_10012679; scaffold1080 TRF Tandem_Repeat 286438 286488 84 + . . scaffold1080 GLEAN mRNA 306185 306303 0.992412 - . ID=CGI_10012680; scaffold1080 TRF Tandem_Repeat 306185 306303 127 + . . scaffold1080 GLEAN mRNA 307825 308057 0.992412 - . ID=CGI_10012680; scaffold1080 TRF Tandem_Repeat 307825 308057 231 + . . scaffold1080 GLEAN mRNA 307818 308057 0.992412 - . ID=CGI_10012680; scaffold1080 TRF Tandem_Repeat 307818 308057 223 + . . scaffold1080 GLEAN mRNA 325113 325161 0.992412 - . ID=CGI_10012680; scaffold1080 TRF Tandem_Repeat 325113 325161 98 + . . scaffold1080 GLEAN mRNA 334472 334641 0.992412 - . ID=CGI_10012680; scaffold1080 TRF Tandem_Repeat 334472 334641 159 + . . scaffold1080 GLEAN mRNA 334721 334761 0.992412 - . ID=CGI_10012680; scaffold1080 TRF Tandem_Repeat 334721 334761 64 + . . scaffold386 GLEAN mRNA 87102 87482 0.997229 - . ID=CGI_10012681; scaffold386 WUBlastX DNA_TcMar-Marin 87102 87482 68 + . . scaffold386 GLEAN mRNA 87207 87461 0.997229 - . ID=CGI_10012681; scaffold386 WUBlastX DNA_TcMar-Marin 87207 87461 70 + . . scaffold386 GLEAN mRNA 98395 98444 0.997229 - . ID=CGI_10012681; scaffold386 TRF Tandem_Repeat 98395 98444 100 + . . scaffold386 GLEAN mRNA 100729 100785 0.997229 - . ID=CGI_10012681; scaffold386 TRF Tandem_Repeat 100729 100785 80 + . . scaffold386 GLEAN mRNA 100732 100785 0.997229 - . ID=CGI_10012681; scaffold386 TRF Tandem_Repeat 100732 100785 65 + . . scaffold386 GLEAN mRNA 98395 98444 0.594428 + . ID=CGI_10012682; scaffold386 TRF Tandem_Repeat 98395 98444 100 + . . scaffold386 GLEAN mRNA 122586 122710 0.566777 - . ID=CGI_10012685; scaffold386 TRF Tandem_Repeat 122586 122710 133 + . . scaffold386 GLEAN mRNA 122617 122734 0.566777 - . ID=CGI_10012685; scaffold386 TRF Tandem_Repeat 122617 122734 128 + . . scaffold386 GLEAN mRNA 122736 122904 0.566777 - . ID=CGI_10012685; scaffold386 TRF Tandem_Repeat 122736 122904 167 + . . scaffold386 GLEAN mRNA 140511 140538 0.566777 - . ID=CGI_10012685; scaffold386 TRF Tandem_Repeat 140511 140538 56 + . . scaffold386 GLEAN mRNA 159758 159795 0.911589 + . ID=CGI_10012686; scaffold386 TRF Tandem_Repeat 159758 159795 76 + . . scaffold386 GLEAN mRNA 169527 169612 0.648491 - . ID=CGI_10012687; scaffold386 TRF Tandem_Repeat 169527 169612 129 + . . scaffold386 GLEAN mRNA 172495 172562 0.648491 - . ID=CGI_10012687; scaffold386 TRF Tandem_Repeat 172495 172562 136 + . . scaffold386 GLEAN mRNA 173124 173197 0.648491 - . ID=CGI_10012687; scaffold386 TRF Tandem_Repeat 173124 173197 148 + . . scaffold386 GLEAN mRNA 180700 180742 0.648491 - . ID=CGI_10012687; scaffold386 TRF Tandem_Repeat 180700 180742 86 + . . scaffold386 GLEAN mRNA 184803 184891 0.648491 - . ID=CGI_10012687; scaffold386 TRF Tandem_Repeat 184803 184891 171 + . . scaffold386 GLEAN mRNA 186436 186462 0.648491 - . ID=CGI_10012687; scaffold386 TRF Tandem_Repeat 186436 186462 54 + . . scaffold386 GLEAN mRNA 186506 186545 0.648491 - . ID=CGI_10012687; scaffold386 TRF Tandem_Repeat 186506 186545 80 + . . scaffold386 GLEAN mRNA 192760 192789 0.986955 + . ID=CGI_10012688; scaffold386 TRF Tandem_Repeat 192760 192789 51 + . . scaffold386 GLEAN mRNA 191976 192356 0.986955 + . ID=CGI_10012688; scaffold386 WUBlastX DNA_Crypton 191976 192356 95 + . . scaffold386 GLEAN mRNA 209171 209348 0.43817 - . ID=CGI_10012689; scaffold386 TRF Tandem_Repeat 209171 209348 71 + . . scaffold386 GLEAN mRNA 210522 210573 0.43817 - . ID=CGI_10012689; scaffold386 TRF Tandem_Repeat 210522 210573 104 + . . scaffold386 GLEAN mRNA 210769 210794 0.43817 - . ID=CGI_10012689; scaffold386 TRF Tandem_Repeat 210769 210794 52 + . . scaffold386 GLEAN mRNA 211376 211888 0.43817 - . ID=CGI_10012689; scaffold386 WUBlastX DNA_Kolobok-IS4 211376 211888 76 + . . scaffold386 GLEAN mRNA 211526 211885 0.43817 - . ID=CGI_10012689; scaffold386 WUBlastX DNA_IS4EU 211526 211885 90 + . . scaffold386 GLEAN mRNA 217085 217262 0.43817 - . ID=CGI_10012689; scaffold386 TRF Tandem_Repeat 217085 217262 80 + . . scaffold386 GLEAN mRNA 217134 217262 0.43817 - . ID=CGI_10012689; scaffold386 TRF Tandem_Repeat 217134 217262 77 + . . scaffold386 GLEAN mRNA 216286 216573 0.43817 - . ID=CGI_10012689; scaffold386 WUBlastX DNA_IS4EU 216286 216573 33 - . . scaffold386 GLEAN mRNA 214396 215523 0.43817 - . ID=CGI_10012689; scaffold386 WUBlastX DNA_Kolobok-IS4 214396 215523 534 - . . scaffold386 GLEAN mRNA 216253 216513 0.43817 - . ID=CGI_10012689; scaffold386 WUBlastX DNA_Kolobok-IS4 216253 216513 54 - . . scaffold386 GLEAN mRNA 212543 213097 0.43817 - . ID=CGI_10012689; scaffold386 WUBlastX DNA_Kolobok-IS4 212543 213097 32 + . . scaffold386 GLEAN mRNA 212915 213151 0.43817 - . ID=CGI_10012689; scaffold386 WUBlastX DNA_IS4EU 212915 213151 44 + . . scaffold386 GLEAN mRNA 258505 258554 0.652172 - . ID=CGI_10012692; scaffold386 TRF Tandem_Repeat 258505 258554 100 + . . scaffold386 GLEAN mRNA 264447 264475 0.652172 - . ID=CGI_10012692; scaffold386 TRF Tandem_Repeat 264447 264475 58 + . . scaffold386 GLEAN mRNA 272617 273309 0.652172 - . ID=CGI_10012692; scaffold386 WUBlastX LTR_Gypsy 272617 273309 87 + . . scaffold386 GLEAN mRNA 282227 282295 0.652172 - . ID=CGI_10012692; scaffold386 TRF Tandem_Repeat 282227 282295 138 + . . scaffold386 GLEAN mRNA 283956 283997 0.652172 - . ID=CGI_10012692; scaffold386 TRF Tandem_Repeat 283956 283997 84 + . . scaffold386 GLEAN mRNA 261977 262420 0.652172 - . ID=CGI_10012692; scaffold386 TRF Tandem_Repeat 261977 262420 304 + . . scaffold386 GLEAN mRNA 326958 327082 1 - . ID=CGI_10012698; scaffold386 TRF Tandem_Repeat 326958 327082 94 + . . scaffold386 GLEAN mRNA 326971 327098 1 - . ID=CGI_10012698; scaffold386 TRF Tandem_Repeat 326971 327098 73 + . . scaffold386 GLEAN mRNA 326949 327105 1 - . ID=CGI_10012698; scaffold386 TRF Tandem_Repeat 326949 327105 280 + . . scaffold386 GLEAN mRNA 330018 330977 1 - . ID=CGI_10012698; scaffold386 TRF Tandem_Repeat 330018 330977 1394 + . . scaffold386 GLEAN mRNA 331008 331047 1 - . ID=CGI_10012698; scaffold386 TRF Tandem_Repeat 331008 331047 64 + . . scaffold825 GLEAN mRNA 96752 96790 1 - . ID=CGI_10012704; scaffold825 TRF Tandem_Repeat 96752 96790 78 + . . scaffold825 GLEAN mRNA 97816 97859 1 - . ID=CGI_10012704; scaffold825 TRF Tandem_Repeat 97816 97859 88 + . . scaffold825 GLEAN mRNA 110453 112219 0.634689 - . ID=CGI_10012705; scaffold825 TRF Tandem_Repeat 110453 112219 3381 + . . scaffold825 GLEAN mRNA 114354 114386 0.634689 - . ID=CGI_10012705; scaffold825 TRF Tandem_Repeat 114354 114386 66 + . . scaffold825 GLEAN mRNA 119236 119283 0.634689 - . ID=CGI_10012705; scaffold825 WUBlastX LTR_Ngaro 119236 119283 20 + . . scaffold825 GLEAN mRNA 118445 119245 0.634689 - . ID=CGI_10012705; scaffold825 WUBlastX LTR_Ngaro 118445 119245 220 + . . scaffold825 GLEAN mRNA 129905 130682 0.940944 - . ID=CGI_10012706; scaffold825 TRF Tandem_Repeat 129905 130682 1122 + . . scaffold825 GLEAN mRNA 131721 131747 0.940944 - . ID=CGI_10012706; scaffold825 TRF Tandem_Repeat 131721 131747 54 + . . scaffold825 GLEAN mRNA 133044 133079 0.940944 - . ID=CGI_10012706; scaffold825 TRF Tandem_Repeat 133044 133079 54 + . . scaffold825 GLEAN mRNA 137914 138007 0.940944 - . ID=CGI_10012706; scaffold825 TRF Tandem_Repeat 137914 138007 134 + . . scaffold825 GLEAN mRNA 138056 138154 0.940944 - . ID=CGI_10012706; scaffold825 TRF Tandem_Repeat 138056 138154 148 + . . scaffold825 GLEAN mRNA 147143 147230 0.843446 - . ID=CGI_10012707; scaffold825 TRF Tandem_Repeat 147143 147230 142 + . . scaffold825 GLEAN mRNA 155276 155312 0.999676 - . ID=CGI_10012708; scaffold825 TRF Tandem_Repeat 155276 155312 74 + . . scaffold825 GLEAN mRNA 172441 172484 0.957388 - . ID=CGI_10012709; scaffold825 TRF Tandem_Repeat 172441 172484 79 + . . scaffold825 GLEAN mRNA 178852 178879 0.999676 - . ID=CGI_10012710; scaffold825 TRF Tandem_Repeat 178852 178879 56 + . . scaffold825 GLEAN mRNA 196679 196720 0.998225 + . ID=CGI_10012712; scaffold825 TRF Tandem_Repeat 196679 196720 84 + . . scaffold825 GLEAN mRNA 200073 200113 0.998225 + . ID=CGI_10012712; scaffold825 TRF Tandem_Repeat 200073 200113 55 + . . scaffold825 GLEAN mRNA 200819 201104 0.998225 + . ID=CGI_10012712; scaffold825 TRF Tandem_Repeat 200819 201104 216 + . . scaffold825 GLEAN mRNA 201992 202309 0.998225 + . ID=CGI_10012712; scaffold825 TRF Tandem_Repeat 201992 202309 530 + . . scaffold825 GLEAN mRNA 197046 197501 0.998225 + . ID=CGI_10012712; scaffold825 WUBlastX LINE_L1-Tx1 197046 197501 38 - . . scaffold825 GLEAN mRNA 197046 197429 0.998225 + . ID=CGI_10012712; scaffold825 WUBlastX LINE_L1-Tx1 197046 197429 64 - . . scaffold825 GLEAN mRNA 196572 196615 0.998225 + . ID=CGI_10012712; scaffold825 TRF Tandem_Repeat 196572 196615 88 + . . scaffold825 GLEAN mRNA 236995 237028 0.881408 + . ID=CGI_10012713; scaffold825 TRF Tandem_Repeat 236995 237028 68 + . . scaffold825 GLEAN mRNA 237174 237311 0.881408 + . ID=CGI_10012713; scaffold825 WUBlastX LTR_Copia 237174 237311 32 + . . scaffold825 GLEAN mRNA 242978 243289 1 - . ID=CGI_10012714; scaffold825 WUBlastX LTR_Ngaro 242978 243289 88 + . . scaffold825 GLEAN mRNA 262654 263238 0.542821 + . ID=CGI_10012716; scaffold825 TRF Tandem_Repeat 262654 263238 648 + . . scaffold825 GLEAN mRNA 294806 294842 1 - . ID=CGI_10012718; scaffold825 TRF Tandem_Repeat 294806 294842 65 + . . scaffold825 GLEAN mRNA 294841 294871 1 - . ID=CGI_10012718; scaffold825 TRF Tandem_Repeat 294841 294871 62 + . . scaffold617 GLEAN mRNA 115143 115994 0.999999 - . ID=CGI_10012723; scaffold617 WUBlastX LINE_RTE-X 115143 116162 239 - . . scaffold617 GLEAN mRNA 115059 115994 0.999999 - . ID=CGI_10012723; scaffold617 WUBlastX LINE_RTE-X 115059 116297 227 - . . scaffold617 GLEAN mRNA 121899 122126 0.866433 + . ID=CGI_10012724; scaffold617 WUBlastX DNA_Academ 121215 122126 482 + . . scaffold617 GLEAN mRNA 128440 128769 0.990104 - . ID=CGI_10012725; scaffold617 WUBlastX DNA_hAT 128440 128769 69 - . . scaffold617 GLEAN mRNA 127228 127299 0.990104 - . ID=CGI_10012725; scaffold617 WUBlastX DNA_hAT-Ac 127228 127299 33 - . . scaffold617 GLEAN mRNA 149218 149305 0.650568 - . ID=CGI_10012727; scaffold617 TRF Tandem_Repeat 149218 149305 104 + . . scaffold617 GLEAN mRNA 149697 149886 0.650568 - . ID=CGI_10012727; scaffold617 TRF Tandem_Repeat 149697 149886 227 + . . scaffold617 GLEAN mRNA 149971 150057 0.650568 - . ID=CGI_10012727; scaffold617 TRF Tandem_Repeat 149971 150057 88 + . . scaffold617 GLEAN mRNA 150131 150312 0.650568 - . ID=CGI_10012727; scaffold617 TRF Tandem_Repeat 150131 150312 91 + . . scaffold617 GLEAN mRNA 150328 150541 0.650568 - . ID=CGI_10012727; scaffold617 TRF Tandem_Repeat 150328 150541 205 + . . scaffold617 GLEAN mRNA 179317 179359 0.84734 - . ID=CGI_10012729; scaffold617 TRF Tandem_Repeat 179317 179359 54 + . . scaffold617 GLEAN mRNA 183904 183935 0.84734 - . ID=CGI_10012729; scaffold617 TRF Tandem_Repeat 183904 183935 55 + . . scaffold617 GLEAN mRNA 242934 243849 0.999351 - . ID=CGI_10012734; scaffold617 TRF Tandem_Repeat 242934 243849 1481 + . . scaffold617 GLEAN mRNA 277762 278016 0.999943 + . ID=CGI_10012737; scaffold617 WUBlastX LINE_CR1 277762 278016 87 - . . scaffold617 GLEAN mRNA 287866 288109 0.999943 + . ID=CGI_10012737; scaffold617 TRF Tandem_Repeat 287866 288109 226 + . . scaffold617 GLEAN mRNA 302754 303633 0.887701 - . ID=CGI_10012738; scaffold617 TRF Tandem_Repeat 302754 303633 615 + . . scaffold617 GLEAN mRNA 303176 304113 0.887701 - . ID=CGI_10012738; scaffold617 TRF Tandem_Repeat 303176 304113 355 + . . scaffold1792 GLEAN mRNA 33247 33301 0.301123 - . ID=CGI_10012741; scaffold1792 TRF Tandem_Repeat 33247 33301 110 + . . scaffold1792 GLEAN mRNA 34771 34804 0.301123 - . ID=CGI_10012741; scaffold1792 TRF Tandem_Repeat 34771 34804 59 + . . scaffold1792 GLEAN mRNA 42192 42224 1 + . ID=CGI_10012742; scaffold1792 TRF Tandem_Repeat 42192 42224 66 + . . scaffold1792 GLEAN mRNA 50923 50976 0.998225 - . ID=CGI_10012743; scaffold1792 TRF Tandem_Repeat 50923 50976 108 + . . scaffold1792 GLEAN mRNA 61910 61964 0.789251 - . ID=CGI_10012744; scaffold1792 TRF Tandem_Repeat 61910 61964 110 + . . scaffold1792 GLEAN mRNA 64096 64133 0.789251 - . ID=CGI_10012744; scaffold1792 TRF Tandem_Repeat 64096 64133 58 + . . scaffold1792 GLEAN mRNA 69486 69620 0.789251 - . ID=CGI_10012744; scaffold1792 WUBlastX LINE_Penelope 69486 69620 35 + . . scaffold1792 GLEAN mRNA 111267 111308 0.789251 - . ID=CGI_10012744; scaffold1792 TRF Tandem_Repeat 111267 111308 84 + . . scaffold1792 GLEAN mRNA 61910 61964 0.440087 + . ID=CGI_10012745; scaffold1792 TRF Tandem_Repeat 61910 61964 110 + . . scaffold1792 GLEAN mRNA 158667 158745 0.95907 + . ID=CGI_10012746; scaffold1792 TRF Tandem_Repeat 158667 158745 158 + . . scaffold1792 GLEAN mRNA 162362 162402 0.95907 + . ID=CGI_10012746; scaffold1792 TRF Tandem_Repeat 162362 162402 64 + . . scaffold1792 GLEAN mRNA 166725 167056 0.95907 + . ID=CGI_10012746; scaffold1792 TRF Tandem_Repeat 166725 167056 547 + . . scaffold1792 GLEAN mRNA 173736 173777 0.95907 + . ID=CGI_10012746; scaffold1792 TRF Tandem_Repeat 173736 173777 77 + . . scaffold1792 GLEAN mRNA 173736 173783 0.95907 + . ID=CGI_10012746; scaffold1792 TRF Tandem_Repeat 173736 173783 51 + . . scaffold1792 GLEAN mRNA 178104 178159 0.95907 + . ID=CGI_10012746; scaffold1792 TRF Tandem_Repeat 178104 178159 85 + . . scaffold1792 GLEAN mRNA 178931 178966 0.95907 + . ID=CGI_10012746; scaffold1792 TRF Tandem_Repeat 178931 178966 72 + . . scaffold1792 GLEAN mRNA 181515 181842 0.95907 + . ID=CGI_10012746; scaffold1792 TRF Tandem_Repeat 181515 181842 494 + . . scaffold1792 GLEAN mRNA 210251 210543 1 - . ID=CGI_10012747; scaffold1792 TRF Tandem_Repeat 210251 210543 192 + . . scaffold1792 GLEAN mRNA 210329 210543 1 - . ID=CGI_10012747; scaffold1792 TRF Tandem_Repeat 210329 210543 192 + . . scaffold1792 GLEAN mRNA 260278 262065 0.999949 - . ID=CGI_10012749; scaffold1792 WUBlastX LINE_RTE-X 260278 262065 762 + . . scaffold1792 GLEAN mRNA 260047 261450 0.999949 - . ID=CGI_10012749; scaffold1792 WUBlastX LINE_L2 260047 261450 235 + . . scaffold1792 GLEAN mRNA 259229 259279 0.999949 - . ID=CGI_10012749; scaffold1792 WUBlastX LINE_L2 259229 259279 26 + . . scaffold1792 GLEAN mRNA 265759 265808 0.999949 - . ID=CGI_10012749; scaffold1792 TRF Tandem_Repeat 265759 265808 100 + . . scaffold1792 GLEAN mRNA 262326 262535 0.999949 - . ID=CGI_10012749; scaffold1792 WUBlastX LINE_CR1 262326 262535 111 + . . scaffold1792 GLEAN mRNA 262359 264071 0.999949 - . ID=CGI_10012749; scaffold1792 WUBlastX LINE_RTE-X 262359 264071 692 + . . scaffold1792 GLEAN mRNA 296943 297015 1 - . ID=CGI_10012751; scaffold1792 TRF Tandem_Repeat 296943 297015 146 + . . scaffold1792 GLEAN mRNA 297043 297092 1 - . ID=CGI_10012751; scaffold1792 TRF Tandem_Repeat 297043 297092 75 + . . scaffold1792 GLEAN mRNA 329256 329351 0.992772 - . ID=CGI_10012752; scaffold1792 WUBlastX LTR_Gypsy 329256 329351 26 + . . scaffold1792 GLEAN mRNA 329278 330099 0.992772 - . ID=CGI_10012752; scaffold1792 WUBlastX LTR_Gypsy 329278 330099 237 + . . scaffold1792 GLEAN mRNA 330103 330384 0.992772 - . ID=CGI_10012752; scaffold1792 WUBlastX LTR_Gypsy 330103 330384 132 + . . scaffold1792 GLEAN mRNA 331049 332011 0.992772 - . ID=CGI_10012752; scaffold1792 WUBlastX LTR_Gypsy 331049 332011 170 + . . scaffold1792 GLEAN mRNA 331097 331663 0.992772 - . ID=CGI_10012752; scaffold1792 WUBlastX LTR_Gypsy 331097 331663 316 + . . scaffold1792 GLEAN mRNA 330399 330614 0.992772 - . ID=CGI_10012752; scaffold1792 WUBlastX LTR_Gypsy 330399 330614 162 + . . scaffold1792 GLEAN mRNA 330628 331044 0.992772 - . ID=CGI_10012752; scaffold1792 WUBlastX LTR_Gypsy 330628 331044 207 + . . scaffold43818 GLEAN mRNA 49903 50115 0.999998 - . ID=CGI_10012756; scaffold43818 TRF Tandem_Repeat 49903 50115 354 + . . scaffold43818 GLEAN mRNA 50087 50820 0.999998 - . ID=CGI_10012756; scaffold43818 TRF Tandem_Repeat 50087 50820 1155 + . . scaffold43818 GLEAN mRNA 90227 90632 0.999948 - . ID=CGI_10012759; scaffold43818 TRF Tandem_Repeat 90227 90632 695 + . . scaffold43818 GLEAN mRNA 90599 90981 0.999948 - . ID=CGI_10012759; scaffold43818 TRF Tandem_Repeat 90599 90981 273 + . . scaffold43818 GLEAN mRNA 96121 96174 0.999948 - . ID=CGI_10012759; scaffold43818 TRF Tandem_Repeat 96121 96174 108 + . . scaffold43818 GLEAN mRNA 100008 100069 0.999948 - . ID=CGI_10012759; scaffold43818 TRF Tandem_Repeat 100008 100069 124 + . . scaffold43818 GLEAN mRNA 181555 181774 0.999624 - . ID=CGI_10012765; scaffold43818 TRF Tandem_Repeat 181555 181774 323 + . . scaffold43818 GLEAN mRNA 186568 187462 0.999624 - . ID=CGI_10012765; scaffold43818 TRF Tandem_Repeat 186568 187462 1070 + . . scaffold43818 GLEAN mRNA 192045 192114 0.999997 + . ID=CGI_10012766; scaffold43818 TRF Tandem_Repeat 192045 192114 56 + . . scaffold43818 GLEAN mRNA 192181 192235 0.999997 + . ID=CGI_10012766; scaffold43818 TRF Tandem_Repeat 192181 192235 110 + . . scaffold43818 GLEAN mRNA 192598 192647 0.999997 + . ID=CGI_10012766; scaffold43818 TRF Tandem_Repeat 192598 192647 100 + . . scaffold43818 GLEAN mRNA 192647 192686 0.999997 + . ID=CGI_10012766; scaffold43818 TRF Tandem_Repeat 192647 192686 80 + . . scaffold43818 GLEAN mRNA 202322 202402 0.999997 + . ID=CGI_10012766; scaffold43818 WUBlastX DNA_TcMar-Marin 202322 202402 30 + . . scaffold43818 GLEAN mRNA 202157 202408 0.999997 + . ID=CGI_10012766; scaffold43818 WUBlastX DNA_TcMar-Marin 202157 202408 22 + . . scaffold43818 GLEAN mRNA 216312 216375 0.561388 - . ID=CGI_10012767; scaffold43818 TRF Tandem_Repeat 216312 216375 83 + . . scaffold43818 GLEAN mRNA 266093 266142 0.997869 + . ID=CGI_10012774; scaffold43818 TRF Tandem_Repeat 266093 266142 66 + . . scaffold43818 GLEAN mRNA 266648 266701 0.997869 + . ID=CGI_10012774; scaffold43818 TRF Tandem_Repeat 266648 266701 67 + . . scaffold43818 GLEAN mRNA 266648 266701 0.997869 + . ID=CGI_10012774; scaffold43818 TRF Tandem_Repeat 266648 266701 58 + . . scaffold43818 GLEAN mRNA 266651 266696 0.997869 + . ID=CGI_10012774; scaffold43818 TRF Tandem_Repeat 266651 266696 58 + . . scaffold43818 GLEAN mRNA 276392 276826 0.997869 + . ID=CGI_10012774; scaffold43818 WUBlastX DNA_TcMar-Marin 276392 276826 169 + . . scaffold43818 GLEAN mRNA 276248 276805 0.997869 + . ID=CGI_10012774; scaffold43818 WUBlastX DNA_TcMar-Marin 276248 276805 125 + . . scaffold43818 GLEAN mRNA 276392 276973 0.997869 + . ID=CGI_10012774; scaffold43818 WUBlastX DNA_TcMar-Marin 276392 276973 139 + . . scaffold43818 GLEAN mRNA 266093 266142 1 - . ID=CGI_10012775; scaffold43818 TRF Tandem_Repeat 266093 266142 66 + . . scaffold43818 GLEAN mRNA 266648 266701 1 - . ID=CGI_10012775; scaffold43818 TRF Tandem_Repeat 266648 266701 67 + . . scaffold43818 GLEAN mRNA 266648 266701 1 - . ID=CGI_10012775; scaffold43818 TRF Tandem_Repeat 266648 266701 58 + . . scaffold43818 GLEAN mRNA 266651 266696 1 - . ID=CGI_10012775; scaffold43818 TRF Tandem_Repeat 266651 266696 58 + . . scaffold43818 GLEAN mRNA 321431 321904 0.37766 + . ID=CGI_10012777; scaffold43818 WUBlastX LTR_Gypsy-Cigr 321431 321904 152 + . . scaffold43818 GLEAN mRNA 321314 321757 0.37766 + . ID=CGI_10012777; scaffold43818 WUBlastX LTR_Gypsy 321314 321757 74 + . . scaffold43818 GLEAN mRNA 321605 322156 0.37766 + . ID=CGI_10012777; scaffold43818 WUBlastX LTR_Gypsy 321605 322156 52 + . . scaffold43818 GLEAN mRNA 321446 322069 0.37766 + . ID=CGI_10012777; scaffold43818 WUBlastX LTR_Gypsy-Cigr 321446 322069 109 + . . scaffold43818 GLEAN mRNA 329204 329668 0.596002 + . ID=CGI_10012778; scaffold43818 WUBlastX LINE_RTE-X 329204 329668 187 + . . scaffold43818 GLEAN mRNA 329099 329668 0.596002 + . ID=CGI_10012778; scaffold43818 WUBlastX LINE_RTE-X 329099 329668 149 + . . scaffold43818 GLEAN mRNA 329680 330288 0.596002 + . ID=CGI_10012778; scaffold43818 WUBlastX LINE_RTE-X 329680 330288 221 + . . scaffold43818 GLEAN mRNA 329055 329189 0.596002 + . ID=CGI_10012778; scaffold43818 WUBlastX LINE_RTE-X 329055 329189 39 + . . scaffold43818 GLEAN mRNA 330335 330691 0.596002 + . ID=CGI_10012778; scaffold43818 WUBlastX LINE_RTE-X 330335 330691 50 + . . scaffold98 GLEAN mRNA 7346 7546 0.999514 + . ID=CGI_10012779; scaffold98 TRF Tandem_Repeat 7346 7546 163 + . . scaffold98 GLEAN mRNA 7545 7736 0.999514 + . ID=CGI_10012779; scaffold98 TRF Tandem_Repeat 7545 7736 134 + . . scaffold98 GLEAN mRNA 28957 28995 0.999514 + . ID=CGI_10012779; scaffold98 TRF Tandem_Repeat 28957 28995 78 + . . scaffold98 GLEAN mRNA 30788 30829 0.999514 + . ID=CGI_10012779; scaffold98 TRF Tandem_Repeat 30788 30829 75 + . . scaffold98 GLEAN mRNA 39153 39593 0.998032 - . ID=CGI_10012780; scaffold98 WUBlastX LINE_L2 39153 39593 34 - . . scaffold98 GLEAN mRNA 255363 255408 0.505854 - . ID=CGI_10012783; scaffold98 TRF Tandem_Repeat 255363 255408 92 + . . scaffold98 GLEAN mRNA 255363 255408 1 + . ID=CGI_10012784; scaffold98 TRF Tandem_Repeat 255363 255408 92 + . . scaffold98 GLEAN mRNA 259575 259620 0.999672 + . ID=CGI_10012785; scaffold98 TRF Tandem_Repeat 259575 259620 92 + . . scaffold98 GLEAN mRNA 270057 270099 0.999942 + . ID=CGI_10012786; scaffold98 TRF Tandem_Repeat 270057 270099 86 + . . scaffold98 GLEAN mRNA 309840 309890 0.999991 - . ID=CGI_10012789; scaffold98 WUBlastX LTR_Copia 309840 309890 25 - . . scaffold1237 GLEAN mRNA 13704 13746 1 - . ID=CGI_10012791; scaffold1237 TRF Tandem_Repeat 13704 13746 86 + . . scaffold1237 GLEAN mRNA 136410 136700 0.799413 - . ID=CGI_10012794; scaffold1237 TRF Tandem_Repeat 136410 136700 357 + . . scaffold1237 GLEAN mRNA 204858 205070 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LINE_L1-Tx1 204858 205070 98 + . . scaffold1237 GLEAN mRNA 204780 205073 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LINE_L1-Tx1 204780 205073 51 + . . scaffold1237 GLEAN mRNA 229313 229366 0.126918 + . ID=CGI_10012796; scaffold1237 TRF Tandem_Repeat 229313 229366 72 + . . scaffold1237 GLEAN mRNA 224046 225794 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 224046 225794 291 - . . scaffold1237 GLEAN mRNA 222452 223138 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 222452 223138 50 - . . scaffold1237 GLEAN mRNA 223708 224433 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 223708 224433 282 - . . scaffold1237 GLEAN mRNA 224433 225776 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 224433 225776 430 - . . scaffold1237 GLEAN mRNA 222155 222307 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 222155 222307 20 - . . scaffold1237 GLEAN mRNA 225806 225997 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 225806 225997 117 - . . scaffold1237 GLEAN mRNA 222557 223474 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 222557 223474 182 - . . scaffold1237 GLEAN mRNA 225997 226269 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 225997 226269 148 - . . scaffold1237 GLEAN mRNA 223030 224421 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 223030 224421 112 - . . scaffold1237 GLEAN mRNA 258907 260229 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_DIRS 258907 260229 741 + . . scaffold1237 GLEAN mRNA 258132 258368 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 258132 258368 28 + . . scaffold1237 GLEAN mRNA 261173 261391 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_DIRS 261173 261391 101 + . . scaffold1237 GLEAN mRNA 258676 259491 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 258676 259491 48 + . . scaffold1237 GLEAN mRNA 258559 259305 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 258559 259305 46 + . . scaffold1237 GLEAN mRNA 258904 261156 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_DIRS 258904 261156 662 + . . scaffold1237 GLEAN mRNA 261182 261442 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_DIRS 261182 261442 78 + . . scaffold1237 GLEAN mRNA 258252 258395 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LTR_Gypsy 258252 258395 21 + . . scaffold1237 GLEAN mRNA 275198 275226 0.126918 + . ID=CGI_10012796; scaffold1237 TRF Tandem_Repeat 275198 275226 58 + . . scaffold1237 GLEAN mRNA 279976 280023 0.126918 + . ID=CGI_10012796; scaffold1237 TRF Tandem_Repeat 279976 280023 51 + . . scaffold1237 GLEAN mRNA 281430 281572 0.126918 + . ID=CGI_10012796; scaffold1237 TRF Tandem_Repeat 281430 281572 108 + . . scaffold1237 GLEAN mRNA 281571 281783 0.126918 + . ID=CGI_10012796; scaffold1237 TRF Tandem_Repeat 281571 281783 98 + . . scaffold1237 GLEAN mRNA 298978 299019 0.728658 - . ID=CGI_10012797; scaffold1237 TRF Tandem_Repeat 298978 299019 84 + . . scaffold1237 GLEAN mRNA 314864 315137 0.728658 - . ID=CGI_10012797; scaffold1237 TRF Tandem_Repeat 314864 315137 147 + . . scaffold1237 GLEAN mRNA 315008 315137 0.728658 - . ID=CGI_10012797; scaffold1237 TRF Tandem_Repeat 315008 315137 145 + . . scaffold1237 GLEAN mRNA 317171 317837 0.728658 - . ID=CGI_10012797; scaffold1237 TRF Tandem_Repeat 317171 317837 1077 + . . scaffold1700 GLEAN mRNA 9852 10031 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 9852 10031 43 + . . scaffold1700 GLEAN mRNA 10028 10052 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 10028 11290 357 + . . scaffold1700 GLEAN mRNA 7783 7992 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 7783 7992 77 + . . scaffold1700 GLEAN mRNA 8019 8993 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 8019 8993 354 + . . scaffold1700 GLEAN mRNA 8947 9732 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 8947 9732 390 + . . scaffold1700 GLEAN mRNA 10028 10052 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 10028 11089 531 + . . scaffold1700 GLEAN mRNA 119273 120175 0.988952 - . ID=CGI_10012802; scaffold1700 TRF Tandem_Repeat 119273 120175 1455 + . . scaffold1700 GLEAN mRNA 156953 157019 0.924571 - . ID=CGI_10012804; scaffold1700 TRF Tandem_Repeat 156953 157019 59 + . . scaffold1700 GLEAN mRNA 298807 298847 0.777732 + . ID=CGI_10012809; scaffold1700 TRF Tandem_Repeat 298807 298847 50 + . . scaffold1700 GLEAN mRNA 299021 299978 0.777732 + . ID=CGI_10012809; scaffold1700 TRF Tandem_Repeat 299021 299978 1152 + . . scaffold1700 GLEAN mRNA 318565 318614 1 - . ID=CGI_10012812; scaffold1700 TRF Tandem_Repeat 318565 318614 100 + . . scaffold1700 GLEAN mRNA 320826 320850 1 - . ID=CGI_10012812; scaffold1700 TRF Tandem_Repeat 320826 320850 50 + . . scaffold1603 GLEAN mRNA 31820 31865 0.728287 - . ID=CGI_10012815; scaffold1603 TRF Tandem_Repeat 31820 31865 76 + . . scaffold1603 GLEAN mRNA 34007 34320 0.728287 - . ID=CGI_10012815; scaffold1603 TRF Tandem_Repeat 34007 34320 330 + . . scaffold1603 GLEAN mRNA 37379 37461 0.728287 - . ID=CGI_10012815; scaffold1603 TRF Tandem_Repeat 37379 37461 103 + . . scaffold1603 GLEAN mRNA 37379 37461 0.728287 - . ID=CGI_10012815; scaffold1603 TRF Tandem_Repeat 37379 37461 103 + . . scaffold1603 GLEAN mRNA 37379 37461 0.728287 - . ID=CGI_10012815; scaffold1603 TRF Tandem_Repeat 37379 37461 103 + . . scaffold1603 GLEAN mRNA 46979 47023 0.999997 - . ID=CGI_10012816; scaffold1603 TRF Tandem_Repeat 46979 47023 81 + . . scaffold1603 GLEAN mRNA 49741 50130 0.999997 - . ID=CGI_10012816; scaffold1603 TRF Tandem_Repeat 49741 50130 564 + . . scaffold1603 GLEAN mRNA 58274 58828 0.999997 - . ID=CGI_10012816; scaffold1603 WUBlastX DNA_P 58274 58828 32 - . . scaffold1603 GLEAN mRNA 59783 60142 0.999997 - . ID=CGI_10012816; scaffold1603 WUBlastX RC_Helitron 59783 60142 110 + . . scaffold1603 GLEAN mRNA 58274 58987 0.999997 - . ID=CGI_10012816; scaffold1603 WUBlastX DNA_P 58274 58987 22 - . . scaffold1603 GLEAN mRNA 59714 60229 0.999997 - . ID=CGI_10012816; scaffold1603 WUBlastX RC_Helitron 59714 60229 99 + . . scaffold1603 GLEAN mRNA 59747 60184 0.999997 - . ID=CGI_10012816; scaffold1603 WUBlastX RC_Helitron 59747 60184 107 + . . scaffold1603 GLEAN mRNA 138493 139154 0.886198 + . ID=CGI_10012820; scaffold1603 TRF Tandem_Repeat 138493 139154 805 + . . scaffold1603 GLEAN mRNA 157658 157709 0.99949 - . ID=CGI_10012822; scaffold1603 TRF Tandem_Repeat 157658 157709 68 + . . scaffold1603 GLEAN mRNA 157709 157743 0.99949 - . ID=CGI_10012822; scaffold1603 TRF Tandem_Repeat 157709 157743 70 + . . scaffold1603 GLEAN mRNA 161009 161123 0.99949 - . ID=CGI_10012822; scaffold1603 TRF Tandem_Repeat 161009 161123 158 + . . scaffold1603 GLEAN mRNA 161983 162289 0.99949 - . ID=CGI_10012822; scaffold1603 TRF Tandem_Repeat 161983 162289 389 + . . scaffold1603 GLEAN mRNA 161983 162290 0.99949 - . ID=CGI_10012822; scaffold1603 TRF Tandem_Repeat 161983 162290 321 + . . scaffold1603 GLEAN mRNA 165378 165435 0.99949 - . ID=CGI_10012822; scaffold1603 TRF Tandem_Repeat 165378 165435 116 + . . scaffold1603 GLEAN mRNA 188155 188840 0.671565 + . ID=CGI_10012824; scaffold1603 TRF Tandem_Repeat 188155 188840 948 + . . scaffold1603 GLEAN mRNA 198292 199008 0.671565 + . ID=CGI_10012824; scaffold1603 TRF Tandem_Repeat 198292 199008 1122 + . . scaffold1603 GLEAN mRNA 198292 199008 0.671565 + . ID=CGI_10012824; scaffold1603 TRF Tandem_Repeat 198292 199008 1125 + . . scaffold1603 GLEAN mRNA 198292 199008 0.671565 + . ID=CGI_10012824; scaffold1603 TRF Tandem_Repeat 198292 199008 1108 + . . scaffold1603 GLEAN mRNA 199944 200102 0.671565 + . ID=CGI_10012824; scaffold1603 TRF Tandem_Repeat 199944 200102 191 + . . scaffold1603 GLEAN mRNA 199948 200102 0.671565 + . ID=CGI_10012824; scaffold1603 TRF Tandem_Repeat 199948 200102 217 + . . scaffold1603 GLEAN mRNA 336600 337096 0.999674 - . ID=CGI_10012827; scaffold1603 TRF Tandem_Repeat 336600 337096 976 + . . scaffold1603 GLEAN mRNA 331952 332011 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 331952 332011 40 - . . scaffold1603 GLEAN mRNA 333551 333682 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 333551 333682 47 - . . scaffold1603 GLEAN mRNA 334130 334402 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 334130 334402 29 - . . scaffold1603 GLEAN mRNA 333158 333376 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 333158 333376 103 - . . scaffold1603 GLEAN mRNA 331801 331980 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 331801 331980 84 - . . scaffold1603 GLEAN mRNA 331560 331610 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 331560 331610 24 - . . scaffold1603 GLEAN mRNA 333688 333831 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 333688 333831 42 - . . scaffold1603 GLEAN mRNA 331940 332104 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 331940 332104 28 - . . scaffold1603 GLEAN mRNA 332076 332528 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 332076 332528 170 - . . scaffold1603 GLEAN mRNA 331560 331601 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 331560 331601 27 - . . scaffold1603 GLEAN mRNA 334127 334576 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 334127 334576 22 - . . scaffold1603 GLEAN mRNA 333170 333421 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 333170 333421 69 - . . scaffold1603 GLEAN mRNA 333703 333795 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 333703 333795 43 - . . scaffold1603 GLEAN mRNA 331630 331938 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 331630 331938 125 - . . scaffold1603 GLEAN mRNA 332070 333143 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 332070 333143 156 - . . scaffold1603 GLEAN mRNA 333361 333558 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 333361 333558 62 - . . scaffold1603 GLEAN mRNA 333867 334100 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 333867 334100 96 - . . scaffold1603 GLEAN mRNA 333780 333998 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 333780 333998 35 - . . scaffold1603 GLEAN mRNA 334564 334644 0.999674 - . ID=CGI_10012827; scaffold1603 WUBlastX LTR_Pao 334564 334644 21 - . . scaffold1337 GLEAN mRNA 73369 73417 0.999981 - . ID=CGI_10012829; scaffold1337 TRF Tandem_Repeat 73369 73417 98 + . . scaffold1337 GLEAN mRNA 74079 74167 0.999981 - . ID=CGI_10012829; scaffold1337 TRF Tandem_Repeat 74079 74167 178 + . . scaffold1337 GLEAN mRNA 92095 92225 0.935292 + . ID=CGI_10012830; scaffold1337 TRF Tandem_Repeat 92095 92225 119 + . . scaffold1337 GLEAN mRNA 93128 93176 0.935292 + . ID=CGI_10012830; scaffold1337 TRF Tandem_Repeat 93128 93176 98 + . . scaffold1337 GLEAN mRNA 118101 118142 0.762925 - . ID=CGI_10012831; scaffold1337 TRF Tandem_Repeat 118101 118142 52 + . . scaffold1337 GLEAN mRNA 128013 128205 0.762925 - . ID=CGI_10012831; scaffold1337 TRF Tandem_Repeat 128013 128205 206 + . . scaffold1337 GLEAN mRNA 128013 128205 0.333189 + . ID=CGI_10012833; scaffold1337 TRF Tandem_Repeat 128013 128205 206 + . . scaffold1337 GLEAN mRNA 139517 140178 0.333189 + . ID=CGI_10012833; scaffold1337 TRF Tandem_Repeat 139517 140178 805 + . . scaffold1337 GLEAN mRNA 135831 136022 0.333189 + . ID=CGI_10012833; scaffold1337 WUBlastX LINE_RTE-X 135831 136022 51 + . . scaffold1337 GLEAN mRNA 155282 155379 1 + . ID=CGI_10012836; scaffold1337 TRF Tandem_Repeat 155282 155379 126 + . . scaffold1337 GLEAN mRNA 162287 162329 0.989003 + . ID=CGI_10012837; scaffold1337 TRF Tandem_Repeat 162287 162329 86 + . . scaffold1337 GLEAN mRNA 167621 167711 0.999661 - . ID=CGI_10012838; scaffold1337 TRF Tandem_Repeat 167621 167711 94 + . . scaffold1337 GLEAN mRNA 167946 167980 0.999661 - . ID=CGI_10012838; scaffold1337 TRF Tandem_Repeat 167946 167980 70 + . . scaffold1337 GLEAN mRNA 169108 169132 0.999661 - . ID=CGI_10012838; scaffold1337 TRF Tandem_Repeat 169108 169132 50 + . . scaffold1337 GLEAN mRNA 190362 190420 0.992795 - . ID=CGI_10012840; scaffold1337 TRF Tandem_Repeat 190362 190420 57 + . . scaffold1337 GLEAN mRNA 281979 282545 0.999981 - . ID=CGI_10012842; scaffold1337 WUBlastX LINE_L2 281979 282545 82 - . . scaffold1337 GLEAN mRNA 281907 282356 0.999981 - . ID=CGI_10012842; scaffold1337 WUBlastX LINE_L2 281907 282356 54 - . . scaffold1337 GLEAN mRNA 281970 282722 0.999981 - . ID=CGI_10012842; scaffold1337 WUBlastX LINE_L1 281970 282722 25 - . . scaffold1337 GLEAN mRNA 333710 334519 0.999409 - . ID=CGI_10012845; scaffold1337 TRF Tandem_Repeat 333710 334519 755 + . . scaffold1337 GLEAN mRNA 340213 340270 0.999409 - . ID=CGI_10012845; scaffold1337 TRF Tandem_Repeat 340213 340270 98 + . . scaffold1337 GLEAN mRNA 340213 340270 1 + . ID=CGI_10012846; scaffold1337 TRF Tandem_Repeat 340213 340270 98 + . . scaffold1020 GLEAN mRNA 10748 10828 1 + . ID=CGI_10012847; scaffold1020 WUBlastX DNA_IS4EU 10748 10828 20 + . . scaffold1020 GLEAN mRNA 11337 11453 1 + . ID=CGI_10012847; scaffold1020 WUBlastX DNA_P 11337 11453 53 + . . scaffold1020 GLEAN mRNA 11334 11606 1 + . ID=CGI_10012847; scaffold1020 WUBlastX DNA_P 11334 11606 48 + . . scaffold1020 GLEAN mRNA 164569 164610 1 - . ID=CGI_10012852; scaffold1020 TRF Tandem_Repeat 164569 164610 84 + . . scaffold1020 GLEAN mRNA 174979 175119 1 - . ID=CGI_10012854; scaffold1020 TRF Tandem_Repeat 174979 175119 228 + . . scaffold1020 GLEAN mRNA 202299 202379 0.999666 - . ID=CGI_10012855; scaffold1020 TRF Tandem_Repeat 202299 202379 108 + . . scaffold1020 GLEAN mRNA 197240 197890 0.999666 - . ID=CGI_10012855; scaffold1020 WUBlastX LINE_L2 197240 197890 280 - . . scaffold1020 GLEAN mRNA 202396 202974 0.999666 - . ID=CGI_10012855; scaffold1020 WUBlastX DNA_IS4EU 202396 202974 91 - . . scaffold1020 GLEAN mRNA 197591 197992 0.999666 - . ID=CGI_10012855; scaffold1020 WUBlastX LINE_L2 197591 197992 68 - . . scaffold1020 GLEAN mRNA 211154 211253 0.999975 - . ID=CGI_10012856; scaffold1020 TRF Tandem_Repeat 211154 211253 200 + . . scaffold1020 GLEAN mRNA 218206 218249 0.999975 - . ID=CGI_10012856; scaffold1020 TRF Tandem_Repeat 218206 218249 79 + . . scaffold1020 GLEAN mRNA 286369 286791 0.857946 + . ID=CGI_10012858; scaffold1020 WUBlastX LINE_RTE-X 286369 286791 112 + . . scaffold1020 GLEAN mRNA 319833 319880 0.999965 - . ID=CGI_10012861; scaffold1020 TRF Tandem_Repeat 319833 319880 78 + . . scaffold1533 GLEAN mRNA 3846 4842 0.80634 - . ID=CGI_10012863; scaffold1533 TRF Tandem_Repeat 3846 4842 1047 + . . scaffold1533 GLEAN mRNA 3846 4842 0.80634 - . ID=CGI_10012863; scaffold1533 TRF Tandem_Repeat 3846 4842 1205 + . . scaffold1533 GLEAN mRNA 3846 4842 0.879993 + . ID=CGI_10012864; scaffold1533 TRF Tandem_Repeat 3846 4842 1047 + . . scaffold1533 GLEAN mRNA 3846 4842 0.879993 + . ID=CGI_10012864; scaffold1533 TRF Tandem_Repeat 3846 4842 1205 + . . scaffold1533 GLEAN mRNA 15544 15798 0.879993 + . ID=CGI_10012864; scaffold1533 TRF Tandem_Repeat 15544 15798 474 + . . scaffold1533 GLEAN mRNA 18766 19773 0.879993 + . ID=CGI_10012864; scaffold1533 TRF Tandem_Repeat 18766 19773 1683 + . . scaffold1533 GLEAN mRNA 20327 20939 0.879993 + . ID=CGI_10012864; scaffold1533 TRF Tandem_Repeat 20327 20939 1028 + . . scaffold1533 GLEAN mRNA 21834 22215 0.879993 + . ID=CGI_10012864; scaffold1533 TRF Tandem_Repeat 21834 22215 629 + . . scaffold1533 GLEAN mRNA 26594 26886 0.879993 + . ID=CGI_10012864; scaffold1533 TRF Tandem_Repeat 26594 26886 388 + . . scaffold1533 GLEAN mRNA 38511 38579 0.879993 + . ID=CGI_10012864; scaffold1533 TRF Tandem_Repeat 38511 38579 122 + . . scaffold1533 GLEAN mRNA 55469 55727 0.999675 + . ID=CGI_10012865; scaffold1533 TRF Tandem_Repeat 55469 55727 133 + . . scaffold1533 GLEAN mRNA 55597 55737 0.999675 + . ID=CGI_10012865; scaffold1533 TRF Tandem_Repeat 55597 55737 264 + . . scaffold1533 GLEAN mRNA 67574 68312 0.814163 + . ID=CGI_10012866; scaffold1533 TRF Tandem_Repeat 67574 68312 1214 + . . scaffold1533 GLEAN mRNA 75430 76124 0.814163 + . ID=CGI_10012866; scaffold1533 TRF Tandem_Repeat 75430 76124 1147 + . . scaffold1533 GLEAN mRNA 75430 76124 0.814163 + . ID=CGI_10012866; scaffold1533 TRF Tandem_Repeat 75430 76124 1147 + . . scaffold1533 GLEAN mRNA 94262 94432 1 + . ID=CGI_10012868; scaffold1533 WUBlastX DNA_Harbinger 94262 94432 78 + . . scaffold1533 GLEAN mRNA 95240 95596 1 + . ID=CGI_10012868; scaffold1533 WUBlastX LINE_CR1-L2 95240 95596 20 - . . scaffold1533 GLEAN mRNA 94238 94450 1 + . ID=CGI_10012868; scaffold1533 WUBlastX DNA_Harbinger 94238 94450 76 + . . scaffold1533 GLEAN mRNA 152446 152493 1 + . ID=CGI_10012871; scaffold1533 TRF Tandem_Repeat 152446 152493 51 + . . scaffold1533 GLEAN mRNA 152448 152494 1 + . ID=CGI_10012871; scaffold1533 TRF Tandem_Repeat 152448 152494 53 + . . scaffold1533 GLEAN mRNA 168520 168552 1 - . ID=CGI_10012872; scaffold1533 TRF Tandem_Repeat 168520 168552 57 + . . scaffold1533 GLEAN mRNA 215570 215633 0.857334 + . ID=CGI_10012876; scaffold1533 TRF Tandem_Repeat 215570 215633 87 + . . scaffold1533 GLEAN mRNA 215750 215793 0.857334 + . ID=CGI_10012876; scaffold1533 TRF Tandem_Repeat 215750 215793 54 + . . scaffold1533 GLEAN mRNA 217679 217742 0.857334 + . ID=CGI_10012876; scaffold1533 TRF Tandem_Repeat 217679 217742 87 + . . scaffold1533 GLEAN mRNA 219775 219838 0.857334 + . ID=CGI_10012876; scaffold1533 TRF Tandem_Repeat 219775 219838 87 + . . scaffold1533 GLEAN mRNA 221871 221934 0.857334 + . ID=CGI_10012876; scaffold1533 TRF Tandem_Repeat 221871 221934 87 + . . scaffold1533 GLEAN mRNA 223967 224030 0.857334 + . ID=CGI_10012876; scaffold1533 TRF Tandem_Repeat 223967 224030 87 + . . scaffold1533 GLEAN mRNA 226063 226126 0.857334 + . ID=CGI_10012876; scaffold1533 TRF Tandem_Repeat 226063 226126 87 + . . scaffold1533 GLEAN mRNA 226243 226286 0.857334 + . ID=CGI_10012876; scaffold1533 TRF Tandem_Repeat 226243 226286 54 + . . scaffold1533 GLEAN mRNA 226403 226458 0.857334 + . ID=CGI_10012876; scaffold1533 TRF Tandem_Repeat 226403 226458 94 + . . scaffold1533 GLEAN mRNA 245869 246073 0.272254 + . ID=CGI_10012877; scaffold1533 TRF Tandem_Repeat 245869 246073 241 + . . scaffold1533 GLEAN mRNA 247790 247841 0.272254 + . ID=CGI_10012877; scaffold1533 TRF Tandem_Repeat 247790 247841 50 + . . scaffold1533 GLEAN mRNA 253199 253242 0.272254 + . ID=CGI_10012877; scaffold1533 TRF Tandem_Repeat 253199 253242 88 + . . scaffold1533 GLEAN mRNA 294790 294828 0.535578 + . ID=CGI_10012879; scaffold1533 TRF Tandem_Repeat 294790 294828 69 + . . scaffold1886 GLEAN mRNA 10488 10529 0.999949 + . ID=CGI_10012882; scaffold1886 TRF Tandem_Repeat 10488 10529 84 + . . scaffold1886 GLEAN mRNA 32349 32401 0.330102 - . ID=CGI_10012884; scaffold1886 TRF Tandem_Repeat 32349 32401 69 + . . scaffold1886 GLEAN mRNA 84688 84730 0.651112 - . ID=CGI_10012885; scaffold1886 TRF Tandem_Repeat 84688 84730 86 + . . scaffold1886 GLEAN mRNA 85351 85388 0.651112 - . ID=CGI_10012885; scaffold1886 TRF Tandem_Repeat 85351 85388 76 + . . scaffold1886 GLEAN mRNA 89411 89481 0.651112 - . ID=CGI_10012885; scaffold1886 TRF Tandem_Repeat 89411 89481 133 + . . scaffold1886 GLEAN mRNA 92983 93032 0.651112 - . ID=CGI_10012885; scaffold1886 TRF Tandem_Repeat 92983 93032 100 + . . scaffold1886 GLEAN mRNA 104024 104191 0.593095 - . ID=CGI_10012886; scaffold1886 WUBlastX DNA_Kolobok-IS4 104024 104191 38 - . . scaffold1886 GLEAN mRNA 104275 104700 0.593095 - . ID=CGI_10012886; scaffold1886 WUBlastX DNA_Kolobok-IS4 104275 104700 66 - . . scaffold1886 GLEAN mRNA 232277 232318 0.898841 + . ID=CGI_10012892; scaffold1886 TRF Tandem_Repeat 232277 232318 84 + . . scaffold1886 GLEAN mRNA 239195 239243 0.898841 + . ID=CGI_10012892; scaffold1886 TRF Tandem_Repeat 239195 239243 98 + . . scaffold1886 GLEAN mRNA 250122 250159 1 + . ID=CGI_10012893; scaffold1886 TRF Tandem_Repeat 250122 250159 60 + . . scaffold223 GLEAN mRNA 3144 3191 0.487602 - . ID=CGI_10012904; scaffold223 TRF Tandem_Repeat 3144 3191 96 + . . scaffold223 GLEAN mRNA 5149 5856 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX LTR_Gypsy 5149 5856 458 - . . scaffold223 GLEAN mRNA 7292 7651 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX LTR_Gypsy 7292 7651 115 - . . scaffold223 GLEAN mRNA 2385 2657 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX DNA_Kolobok-Hyd 2385 2657 21 - . . scaffold223 GLEAN mRNA 5146 5745 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX LTR_Gypsy 5146 5745 540 - . . scaffold223 GLEAN mRNA 5756 6631 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX LTR_Gypsy 5756 6631 169 - . . scaffold223 GLEAN mRNA 6667 7182 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX LTR_Gypsy 6667 7182 33 - . . scaffold223 GLEAN mRNA 7286 7570 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX LTR_Gypsy 7286 7570 123 - . . scaffold223 GLEAN mRNA 5041 5700 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX LTR_Gypsy 5041 5700 226 - . . scaffold223 GLEAN mRNA 6260 6703 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX LTR_Gypsy 6260 6703 96 - . . scaffold223 GLEAN mRNA 71660 72570 0.45011 - . ID=CGI_10012909; scaffold223 TRF Tandem_Repeat 71660 72570 1518 + . . scaffold223 GLEAN mRNA 71660 72570 0.45011 - . ID=CGI_10012909; scaffold223 TRF Tandem_Repeat 71660 72570 1527 + . . scaffold223 GLEAN mRNA 71660 72570 0.45011 - . ID=CGI_10012909; scaffold223 TRF Tandem_Repeat 71660 72570 1547 + . . scaffold223 GLEAN mRNA 77746 78344 0.45011 - . ID=CGI_10012909; scaffold223 TRF Tandem_Repeat 77746 78344 1171 + . . scaffold223 GLEAN mRNA 77746 79290 0.45011 - . ID=CGI_10012909; scaffold223 TRF Tandem_Repeat 77746 79290 2718 + . . scaffold223 GLEAN mRNA 78298 79136 0.45011 - . ID=CGI_10012909; scaffold223 TRF Tandem_Repeat 78298 79136 1651 + . . scaffold223 GLEAN mRNA 78334 79278 0.45011 - . ID=CGI_10012909; scaffold223 TRF Tandem_Repeat 78334 79278 1266 + . . scaffold223 GLEAN mRNA 78970 79157 0.45011 - . ID=CGI_10012909; scaffold223 TRF Tandem_Repeat 78970 79157 189 + . . scaffold223 GLEAN mRNA 94518 95276 0.899585 + . ID=CGI_10012910; scaffold223 TRF Tandem_Repeat 94518 95276 420 + . . scaffold223 GLEAN mRNA 94799 95152 0.899585 + . ID=CGI_10012910; scaffold223 TRF Tandem_Repeat 94799 95152 561 + . . scaffold223 GLEAN mRNA 97538 98280 0.899585 + . ID=CGI_10012910; scaffold223 TRF Tandem_Repeat 97538 98280 913 + . . scaffold223 GLEAN mRNA 99613 99650 0.899585 + . ID=CGI_10012910; scaffold223 TRF Tandem_Repeat 99613 99650 76 + . . scaffold223 GLEAN mRNA 100843 100889 0.899585 + . ID=CGI_10012910; scaffold223 TRF Tandem_Repeat 100843 100889 94 + . . scaffold223 GLEAN mRNA 107907 108093 0.899585 + . ID=CGI_10012910; scaffold223 TRF Tandem_Repeat 107907 108093 96 + . . scaffold223 GLEAN mRNA 109373 109559 0.899585 + . ID=CGI_10012910; scaffold223 TRF Tandem_Repeat 109373 109559 96 + . . scaffold223 GLEAN mRNA 109755 110061 0.899585 + . ID=CGI_10012910; scaffold223 TRF Tandem_Repeat 109755 110061 479 + . . scaffold223 GLEAN mRNA 111043 111091 0.899585 + . ID=CGI_10012910; scaffold223 TRF Tandem_Repeat 111043 111091 98 + . . scaffold223 GLEAN mRNA 200097 200137 0.478695 + . ID=CGI_10012914; scaffold223 TRF Tandem_Repeat 200097 200137 82 + . . scaffold223 GLEAN mRNA 200741 200774 0.478695 + . ID=CGI_10012914; scaffold223 TRF Tandem_Repeat 200741 200774 68 + . . scaffold223 GLEAN mRNA 200817 200894 0.478695 + . ID=CGI_10012914; scaffold223 TRF Tandem_Repeat 200817 200894 72 + . . scaffold223 GLEAN mRNA 203672 204421 0.478695 + . ID=CGI_10012914; scaffold223 TRF Tandem_Repeat 203672 204421 939 + . . scaffold223 GLEAN mRNA 210949 211028 0.734554 - . ID=CGI_10012915; scaffold223 TRF Tandem_Repeat 210949 211028 101 + . . scaffold223 GLEAN mRNA 210955 212071 0.734554 - . ID=CGI_10012915; scaffold223 TRF Tandem_Repeat 210955 212071 1176 + . . scaffold223 GLEAN mRNA 211606 211684 0.734554 - . ID=CGI_10012915; scaffold223 TRF Tandem_Repeat 211606 211684 50 + . . scaffold223 GLEAN mRNA 211750 212081 0.734554 - . ID=CGI_10012915; scaffold223 TRF Tandem_Repeat 211750 212081 70 + . . scaffold223 GLEAN mRNA 213101 213299 0.734554 - . ID=CGI_10012915; scaffold223 TRF Tandem_Repeat 213101 213299 130 + . . scaffold223 GLEAN mRNA 222961 223115 0.850648 + . ID=CGI_10012918; scaffold223 TRF Tandem_Repeat 222961 223115 177 + . . scaffold223 GLEAN mRNA 226499 227174 0.850648 + . ID=CGI_10012918; scaffold223 TRF Tandem_Repeat 226499 227174 976 + . . scaffold223 GLEAN mRNA 226500 227174 0.850648 + . ID=CGI_10012918; scaffold223 TRF Tandem_Repeat 226500 227174 1063 + . . scaffold223 GLEAN mRNA 226912 227048 0.850648 + . ID=CGI_10012918; scaffold223 TRF Tandem_Repeat 226912 227048 80 + . . scaffold223 GLEAN mRNA 232262 232567 0.850648 + . ID=CGI_10012918; scaffold223 WUBlastX LINE_RTE-BovB 232262 232567 59 + . . scaffold223 GLEAN mRNA 279060 280706 0.814847 - . ID=CGI_10012923; scaffold223 TRF Tandem_Repeat 279060 280706 2119 + . . scaffold223 GLEAN mRNA 279060 280706 0.814847 - . ID=CGI_10012923; scaffold223 TRF Tandem_Repeat 279060 280706 2087 + . . scaffold223 GLEAN mRNA 283616 284398 0.814847 - . ID=CGI_10012923; scaffold223 WUBlastX DNA_Harbinger 283616 284398 226 + . . scaffold223 GLEAN mRNA 283616 284278 0.814847 - . ID=CGI_10012923; scaffold223 WUBlastX DNA_Harbinger 283616 284278 260 + . . scaffold223 GLEAN mRNA 283323 283451 0.814847 - . ID=CGI_10012923; scaffold223 WUBlastX Unknown 283323 283451 25 + . . scaffold5 GLEAN mRNA 45244 45286 0.676364 + . ID=CGI_10012924; scaffold5 TRF Tandem_Repeat 45244 45286 86 + . . scaffold5 GLEAN mRNA 47579 48385 0.676364 + . ID=CGI_10012924; scaffold5 WUBlastX LTR_DIRS 47579 48385 443 + . . scaffold5 GLEAN mRNA 48399 49421 0.676364 + . ID=CGI_10012924; scaffold5 WUBlastX LTR_DIRS 48399 49421 834 + . . scaffold5 GLEAN mRNA 47579 48385 0.730165 - . ID=CGI_10012925; scaffold5 WUBlastX LTR_DIRS 47579 48385 443 + . . scaffold5 GLEAN mRNA 50970 51717 0.730165 - . ID=CGI_10012925; scaffold5 TRF Tandem_Repeat 50970 51717 656 + . . scaffold5 GLEAN mRNA 58069 58096 0.730165 - . ID=CGI_10012925; scaffold5 TRF Tandem_Repeat 58069 58096 56 + . . scaffold5 GLEAN mRNA 62418 62666 0.730165 - . ID=CGI_10012925; scaffold5 WUBlastX LINE_RTE-X 62418 62666 84 + . . scaffold5 GLEAN mRNA 48399 49421 0.730165 - . ID=CGI_10012925; scaffold5 WUBlastX LTR_DIRS 48399 49421 834 + . . scaffold5 GLEAN mRNA 246759 246811 0.911399 + . ID=CGI_10012930; scaffold5 TRF Tandem_Repeat 246759 246811 72 + . . scaffold5 GLEAN mRNA 252490 252527 1 + . ID=CGI_10012931; scaffold5 TRF Tandem_Repeat 252490 252527 76 + . . scaffold5 GLEAN mRNA 255077 255776 1 + . ID=CGI_10012931; scaffold5 TRF Tandem_Repeat 255077 255776 616 + . . scaffold5 GLEAN mRNA 271625 271906 0.999999 - . ID=CGI_10012932; scaffold5 WUBlastX DNA_MuDR 271625 271906 55 - . . scaffold5 GLEAN mRNA 278628 278681 0.833334 + . ID=CGI_10012934; scaffold5 TRF Tandem_Repeat 278628 278681 74 + . . scaffold5 GLEAN mRNA 324780 324849 0.999673 - . ID=CGI_10012936; scaffold5 TRF Tandem_Repeat 324780 324849 104 + . . scaffold5 GLEAN mRNA 324783 324857 0.999673 - . ID=CGI_10012936; scaffold5 TRF Tandem_Repeat 324783 324857 89 + . . scaffold606 GLEAN mRNA 6984 7067 0.73346 + . ID=CGI_10012937; scaffold606 WUBlastX LTR_Gypsy-Troyk 6912 7067 81 + . . scaffold606 GLEAN mRNA 43859 43960 0.901376 - . ID=CGI_10012938; scaffold606 WUBlastX LINE_CR1 43508 43960 79 - . . scaffold606 GLEAN mRNA 67989 68018 0.70137 - . ID=CGI_10012940; scaffold606 TRF Tandem_Repeat 67989 68018 51 + . . scaffold606 GLEAN mRNA 66955 67869 0.70137 - . ID=CGI_10012940; scaffold606 WUBlastX LINE_RTE-X 66955 67869 282 - . . scaffold606 GLEAN mRNA 169141 169775 0.99991 - . ID=CGI_10012945; scaffold606 TRF Tandem_Repeat 169141 169775 461 + . . scaffold606 GLEAN mRNA 169876 169993 0.99991 - . ID=CGI_10012945; scaffold606 TRF Tandem_Repeat 169876 169993 69 + . . scaffold606 GLEAN mRNA 207337 207615 0.983743 - . ID=CGI_10012948; scaffold606 WUBlastX LINE_Penelope 207337 207615 97 - . . scaffold606 GLEAN mRNA 265436 265479 0.999676 + . ID=CGI_10012951; scaffold606 TRF Tandem_Repeat 265436 265479 61 + . . scaffold606 GLEAN mRNA 265668 267393 0.999676 + . ID=CGI_10012951; scaffold606 TRF Tandem_Repeat 265668 267393 2076 + . . scaffold606 GLEAN mRNA 280048 280101 0.993054 + . ID=CGI_10012952; scaffold606 TRF Tandem_Repeat 280048 280101 101 + . . scaffold606 GLEAN mRNA 282974 283036 0.993054 + . ID=CGI_10012952; scaffold606 TRF Tandem_Repeat 282974 283036 119 + . . scaffold606 GLEAN mRNA 283414 283479 0.993054 + . ID=CGI_10012952; scaffold606 TRF Tandem_Repeat 283414 283479 132 + . . scaffold606 GLEAN mRNA 294596 294633 0.55655 + . ID=CGI_10012953; scaffold606 WUBlastX LTR_Gypsy 294596 294976 27 + . . scaffold606 GLEAN mRNA 296802 297104 1 + . ID=CGI_10012954; scaffold606 WUBlastX LINE_RTE-BovB 296802 297104 104 + . . scaffold606 GLEAN mRNA 296790 297080 1 + . ID=CGI_10012954; scaffold606 WUBlastX LINE_CR1-L2 296709 297080 58 + . . scaffold606 GLEAN mRNA 301169 301225 0.853994 - . ID=CGI_10012955; scaffold606 TRF Tandem_Repeat 301169 301225 105 + . . scaffold606 GLEAN mRNA 302332 302397 0.853994 - . ID=CGI_10012955; scaffold606 TRF Tandem_Repeat 302332 302397 132 + . . scaffold606 GLEAN mRNA 302814 302959 0.853994 - . ID=CGI_10012955; scaffold606 TRF Tandem_Repeat 302814 302959 163 + . . scaffold606 GLEAN mRNA 308433 308569 0.853994 - . ID=CGI_10012955; scaffold606 TRF Tandem_Repeat 308433 308569 115 + . . scaffold606 GLEAN mRNA 313488 313603 0.853994 - . ID=CGI_10012955; scaffold606 TRF Tandem_Repeat 313488 313603 65 + . . scaffold606 GLEAN mRNA 322236 322268 0.853994 - . ID=CGI_10012955; scaffold606 TRF Tandem_Repeat 322236 322268 57 + . . scaffold606 GLEAN mRNA 324822 325057 0.853994 - . ID=CGI_10012955; scaffold606 TRF Tandem_Repeat 324822 325057 149 + . . scaffold606 GLEAN mRNA 324881 325337 0.853994 - . ID=CGI_10012955; scaffold606 TRF Tandem_Repeat 324881 325337 239 + . . scaffold606 GLEAN mRNA 324981 325323 0.853994 - . ID=CGI_10012955; scaffold606 TRF Tandem_Repeat 324981 325323 296 + . . scaffold1054 GLEAN mRNA 220657 220755 0.992562 + . ID=CGI_10012962; scaffold1054 TRF Tandem_Repeat 220657 220755 119 + . . scaffold1054 GLEAN mRNA 228203 228589 0.992562 + . ID=CGI_10012962; scaffold1054 TRF Tandem_Repeat 228203 228589 461 + . . scaffold1054 GLEAN mRNA 266281 266363 0.889923 + . ID=CGI_10012963; scaffold1054 TRF Tandem_Repeat 266281 266363 136 + . . scaffold1054 GLEAN mRNA 272000 272049 0.889923 + . ID=CGI_10012963; scaffold1054 TRF Tandem_Repeat 272000 272049 55 + . . scaffold1054 GLEAN mRNA 271999 272103 0.889923 + . ID=CGI_10012963; scaffold1054 TRF Tandem_Repeat 271999 272103 63 + . . scaffold1054 GLEAN mRNA 273321 273374 0.889923 + . ID=CGI_10012963; scaffold1054 TRF Tandem_Repeat 273321 273374 90 + . . scaffold1054 GLEAN mRNA 277098 277199 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 277098 277199 43 + . . scaffold1054 GLEAN mRNA 277567 277716 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 277567 277716 31 + . . scaffold1054 GLEAN mRNA 277077 277199 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 277077 277199 39 + . . scaffold1054 GLEAN mRNA 278100 278204 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 278100 278204 45 + . . scaffold1054 GLEAN mRNA 282913 282946 0.889923 + . ID=CGI_10012963; scaffold1054 TRF Tandem_Repeat 282913 282946 59 + . . scaffold1054 GLEAN mRNA 279694 279903 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 279694 279903 43 - . . scaffold1054 GLEAN mRNA 279053 279589 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 279053 279589 297 - . . scaffold1054 GLEAN mRNA 279056 279715 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_Kolobok-IS4 279056 279715 282 - . . scaffold1054 GLEAN mRNA 278481 278702 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 278481 278702 61 + . . scaffold1054 GLEAN mRNA 278514 278693 0.889923 + . ID=CGI_10012963; scaffold1054 WUBlastX DNA_IS4EU 278514 278693 62 + . . scaffold1054 GLEAN mRNA 277098 277199 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 277098 277199 43 + . . scaffold1054 GLEAN mRNA 277567 277716 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 277567 277716 31 + . . scaffold1054 GLEAN mRNA 277077 277199 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 277077 277199 39 + . . scaffold1054 GLEAN mRNA 278100 278204 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 278100 278204 45 + . . scaffold1054 GLEAN mRNA 282913 282946 0.999237 - . ID=CGI_10012964; scaffold1054 TRF Tandem_Repeat 282913 282946 59 + . . scaffold1054 GLEAN mRNA 279694 279903 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 279694 279903 43 - . . scaffold1054 GLEAN mRNA 279053 279589 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 279053 279589 297 - . . scaffold1054 GLEAN mRNA 279056 279715 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_Kolobok-IS4 279056 279715 282 - . . scaffold1054 GLEAN mRNA 278481 278702 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 278481 278702 61 + . . scaffold1054 GLEAN mRNA 278514 278693 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 278514 278693 62 + . . scaffold1054 GLEAN mRNA 319201 319243 0.968602 + . ID=CGI_10012967; scaffold1054 TRF Tandem_Repeat 319201 319243 77 + . . scaffold1054 GLEAN mRNA 312999 313223 0.968602 + . ID=CGI_10012967; scaffold1054 WUBlastX LINE_L2 312999 313223 100 + . . scaffold1054 GLEAN mRNA 315745 315957 0.968602 + . ID=CGI_10012967; scaffold1054 WUBlastX LINE_L2 315745 315957 125 + . . scaffold1054 GLEAN mRNA 313193 313351 0.968602 + . ID=CGI_10012967; scaffold1054 WUBlastX LINE_L2 313193 313351 63 + . . scaffold1054 GLEAN mRNA 312831 313205 0.968602 + . ID=CGI_10012967; scaffold1054 WUBlastX LINE_L2 312831 313205 77 + . . scaffold1054 GLEAN mRNA 313351 315762 0.968602 + . ID=CGI_10012967; scaffold1054 WUBlastX LINE_L2 313351 315762 1402 + . . scaffold1054 GLEAN mRNA 312891 313205 0.968602 + . ID=CGI_10012967; scaffold1054 WUBlastX LINE_L2 312891 313205 85 + . . scaffold1054 GLEAN mRNA 332260 332496 0.999415 + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 332260 332496 79 + . . scaffold1054 GLEAN mRNA 331938 332156 0.999415 + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 331938 332156 116 + . . scaffold1054 GLEAN mRNA 332284 332553 0.999415 + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 332284 332553 62 + . . scaffold1054 GLEAN mRNA 333036 333284 0.999415 + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 333036 333284 93 + . . scaffold1054 GLEAN mRNA 332074 332523 0.999415 + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 332074 332523 62 + . . scaffold1054 GLEAN mRNA 332850 333041 0.999415 + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 332850 333041 66 + . . scaffold1054 GLEAN mRNA 331138 331824 0.999415 + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 331129 331824 209 + . . scaffold1054 GLEAN mRNA 332859 333011 0.999415 + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 332859 333011 88 + . . scaffold1347 GLEAN mRNA 21728 21850 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX LTR_Gypsy-Cigr 21728 21850 24 + . . scaffold1347 GLEAN mRNA 21927 22226 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX LTR_Gypsy-Cigr 21927 22226 94 + . . scaffold1347 GLEAN mRNA 24180 24299 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 24180 24299 42 + . . scaffold1347 GLEAN mRNA 23753 24178 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 23753 24178 166 + . . scaffold1347 GLEAN mRNA 24824 25177 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 24824 25177 32 + . . scaffold1347 GLEAN mRNA 25949 26350 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 25949 26350 183 + . . scaffold1347 GLEAN mRNA 26388 26600 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 26388 26600 43 + . . scaffold1347 GLEAN mRNA 27301 28836 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 27301 28836 869 - . . scaffold1347 GLEAN mRNA 25542 25673 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 25542 25673 50 + . . scaffold1347 GLEAN mRNA 24887 25108 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 24887 25108 40 + . . scaffold1347 GLEAN mRNA 26433 26867 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX DNA_IS4EU 26433 26867 97 + . . scaffold1347 GLEAN mRNA 21903 22289 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX LTR_Gypsy 21903 22289 70 + . . scaffold1347 GLEAN mRNA 53564 53601 0.999998 + . ID=CGI_10012973; scaffold1347 TRF Tandem_Repeat 53564 53601 76 + . . scaffold1347 GLEAN mRNA 56200 56236 0.999998 + . ID=CGI_10012973; scaffold1347 TRF Tandem_Repeat 56200 56236 51 + . . scaffold1347 GLEAN mRNA 141865 142209 0.49238 + . ID=CGI_10012974; scaffold1347 WUBlastX LINE_RTE-X 141865 142209 57 + . . scaffold1347 GLEAN mRNA 141609 141809 0.49238 + . ID=CGI_10012974; scaffold1347 WUBlastX LINE_RTE-X 141609 141809 88 + . . scaffold1347 GLEAN mRNA 141761 142000 0.49238 + . ID=CGI_10012974; scaffold1347 WUBlastX LINE_RTE-X 141761 142000 58 + . . scaffold1347 GLEAN mRNA 141555 141758 0.49238 + . ID=CGI_10012974; scaffold1347 WUBlastX LINE_RTE-X 141555 141758 114 + . . scaffold1347 GLEAN mRNA 142012 142251 0.49238 + . ID=CGI_10012974; scaffold1347 WUBlastX LINE_RTE-X 142012 142251 41 + . . scaffold1347 GLEAN mRNA 197081 197135 0.218139 + . ID=CGI_10012977; scaffold1347 TRF Tandem_Repeat 197081 197135 110 + . . scaffold1347 GLEAN mRNA 197252 197302 0.218139 + . ID=CGI_10012977; scaffold1347 TRF Tandem_Repeat 197252 197302 93 + . . scaffold1347 GLEAN mRNA 198922 198971 0.218139 + . ID=CGI_10012977; scaffold1347 TRF Tandem_Repeat 198922 198971 100 + . . scaffold1347 GLEAN mRNA 253751 254334 0.985538 + . ID=CGI_10012979; scaffold1347 TRF Tandem_Repeat 253751 254334 600 + . . scaffold1347 GLEAN mRNA 256503 256663 0.985538 + . ID=CGI_10012979; scaffold1347 TRF Tandem_Repeat 256503 256663 171 + . . scaffold1347 GLEAN mRNA 256671 256779 0.985538 + . ID=CGI_10012979; scaffold1347 TRF Tandem_Repeat 256671 256779 103 + . . scaffold1347 GLEAN mRNA 256844 256931 0.985538 + . ID=CGI_10012979; scaffold1347 TRF Tandem_Repeat 256844 256931 90 + . . scaffold1347 GLEAN mRNA 265172 265268 1 - . ID=CGI_10012980; scaffold1347 TRF Tandem_Repeat 265172 265268 103 + . . scaffold1347 GLEAN mRNA 265532 265567 1 - . ID=CGI_10012980; scaffold1347 TRF Tandem_Repeat 265532 265567 72 + . . scaffold1347 GLEAN mRNA 266478 266510 1 - . ID=CGI_10012980; scaffold1347 TRF Tandem_Repeat 266478 266510 50 + . . scaffold1347 GLEAN mRNA 266754 266869 1 - . ID=CGI_10012980; scaffold1347 TRF Tandem_Repeat 266754 266869 78 + . . scaffold1347 GLEAN mRNA 266754 266858 1 - . ID=CGI_10012980; scaffold1347 TRF Tandem_Repeat 266754 266858 94 + . . scaffold1347 GLEAN mRNA 317032 317057 0.924019 + . ID=CGI_10012984; scaffold1347 TRF Tandem_Repeat 317032 317057 52 + . . scaffold1347 GLEAN mRNA 325152 325892 0.924019 + . ID=CGI_10012984; scaffold1347 WUBlastX DNA_Maverick 325152 325892 458 + . . scaffold1347 GLEAN mRNA 325913 326254 0.924019 + . ID=CGI_10012984; scaffold1347 WUBlastX DNA_Maverick 325913 326254 213 + . . scaffold1347 GLEAN mRNA 326319 326438 0.924019 + . ID=CGI_10012984; scaffold1347 WUBlastX DNA_Maverick 326319 326438 40 + . . scaffold1347 GLEAN mRNA 326358 326495 0.924019 + . ID=CGI_10012984; scaffold1347 WUBlastX DNA_Maverick 326358 326495 29 + . . scaffold1347 GLEAN mRNA 326475 326669 0.924019 + . ID=CGI_10012984; scaffold1347 WUBlastX DNA_Maverick 326475 326669 32 + . . scaffold1347 GLEAN mRNA 325326 326024 0.924019 + . ID=CGI_10012984; scaffold1347 WUBlastX DNA_Maverick 325326 326024 261 + . . scaffold1347 GLEAN mRNA 326289 326441 0.924019 + . ID=CGI_10012984; scaffold1347 WUBlastX DNA_Maverick 326289 326441 27 + . . scaffold1328 GLEAN mRNA 107324 107413 0.999949 - . ID=CGI_10012987; scaffold1328 TRF Tandem_Repeat 107324 107413 76 + . . scaffold1328 GLEAN mRNA 107959 108878 0.999949 - . ID=CGI_10012987; scaffold1328 TRF Tandem_Repeat 107959 108878 1210 + . . scaffold1328 GLEAN mRNA 229896 230015 0.999186 - . ID=CGI_10012991; scaffold1328 TRF Tandem_Repeat 229896 230015 150 + . . scaffold1328 GLEAN mRNA 240967 241012 0.999186 - . ID=CGI_10012991; scaffold1328 TRF Tandem_Repeat 240967 241012 92 + . . scaffold1328 GLEAN mRNA 241759 241811 0.999186 - . ID=CGI_10012991; scaffold1328 TRF Tandem_Repeat 241759 241811 106 + . . scaffold1328 GLEAN mRNA 316802 317129 0.78586 - . ID=CGI_10012993; scaffold1328 TRF Tandem_Repeat 316802 317129 333 + . . scaffold1328 GLEAN mRNA 316799 317185 0.78586 - . ID=CGI_10012993; scaffold1328 TRF Tandem_Repeat 316799 317185 258 + . . scaffold1328 GLEAN mRNA 311668 316782 0.78586 - . ID=CGI_10012993; scaffold1328 WUBlastX LTR_Pao 311668 316782 3981 - . . scaffold1328 GLEAN mRNA 317257 317523 0.78586 - . ID=CGI_10012993; scaffold1328 WUBlastX LTR_Pao 317257 317523 58 - . . scaffold1164 GLEAN mRNA 23546 23582 0.902831 - . ID=CGI_10012997; scaffold1164 TRF Tandem_Repeat 23546 23582 74 + . . scaffold1164 GLEAN mRNA 31106 31139 0.902831 - . ID=CGI_10012997; scaffold1164 TRF Tandem_Repeat 31106 31139 68 + . . scaffold1164 GLEAN mRNA 31340 31952 0.902831 - . ID=CGI_10012997; scaffold1164 TRF Tandem_Repeat 31340 31952 978 + . . scaffold1164 GLEAN mRNA 32444 32875 0.902831 - . ID=CGI_10012997; scaffold1164 TRF Tandem_Repeat 32444 32875 686 + . . scaffold1164 GLEAN mRNA 45208 45318 0.99996 + . ID=CGI_10012998; scaffold1164 TRF Tandem_Repeat 45208 45318 213 + . . scaffold1164 GLEAN mRNA 92552 92992 0.836235 - . ID=CGI_10012999; scaffold1164 WUBlastX LINE_L2 92552 92992 65 - . . scaffold1164 GLEAN mRNA 97796 97839 1 - . ID=CGI_10013000; scaffold1164 TRF Tandem_Repeat 97796 97839 88 + . . scaffold1164 GLEAN mRNA 112165 112206 0.862406 - . ID=CGI_10013001; scaffold1164 TRF Tandem_Repeat 112165 112206 84 + . . scaffold1164 GLEAN mRNA 114499 114570 0.862406 - . ID=CGI_10013001; scaffold1164 TRF Tandem_Repeat 114499 114570 144 + . . scaffold1164 GLEAN mRNA 158491 158941 0.999676 + . ID=CGI_10013004; scaffold1164 TRF Tandem_Repeat 158491 158941 434 + . . scaffold1164 GLEAN mRNA 158451 158827 0.999676 + . ID=CGI_10013004; scaffold1164 TRF Tandem_Repeat 158451 158827 410 + . . scaffold1164 GLEAN mRNA 158474 158941 0.999676 + . ID=CGI_10013004; scaffold1164 TRF Tandem_Repeat 158474 158941 611 + . . scaffold1164 GLEAN mRNA 158583 158939 0.999676 + . ID=CGI_10013004; scaffold1164 TRF Tandem_Repeat 158583 158939 122 + . . scaffold1164 GLEAN mRNA 158583 158939 0.999676 + . ID=CGI_10013004; scaffold1164 TRF Tandem_Repeat 158583 158939 335 + . . scaffold1164 GLEAN mRNA 169886 170688 0.999676 + . ID=CGI_10013004; scaffold1164 TRF Tandem_Repeat 169886 170688 1170 + . . scaffold1164 GLEAN mRNA 175224 175264 0.999676 + . ID=CGI_10013004; scaffold1164 TRF Tandem_Repeat 175224 175264 66 + . . scaffold1164 GLEAN mRNA 180424 180494 0.999676 + . ID=CGI_10013004; scaffold1164 TRF Tandem_Repeat 180424 180494 88 + . . scaffold1164 GLEAN mRNA 180424 180509 0.999676 + . ID=CGI_10013004; scaffold1164 TRF Tandem_Repeat 180424 180509 131 + . . scaffold1164 GLEAN mRNA 180749 180786 0.999676 + . ID=CGI_10013004; scaffold1164 TRF Tandem_Repeat 180749 180786 76 + . . scaffold1164 GLEAN mRNA 181220 181282 0.999676 + . ID=CGI_10013004; scaffold1164 TRF Tandem_Repeat 181220 181282 65 + . . scaffold1164 GLEAN mRNA 244635 244671 0.999979 + . ID=CGI_10013007; scaffold1164 TRF Tandem_Repeat 244635 244671 65 + . . scaffold1164 GLEAN mRNA 262473 262524 0.933838 - . ID=CGI_10013008; scaffold1164 TRF Tandem_Repeat 262473 262524 50 + . . scaffold1164 GLEAN mRNA 262473 262524 0.933838 - . ID=CGI_10013008; scaffold1164 TRF Tandem_Repeat 262473 262524 68 + . . scaffold1164 GLEAN mRNA 297233 297667 0.91066 - . ID=CGI_10013010; scaffold1164 TRF Tandem_Repeat 297233 297667 564 + . . scaffold1164 GLEAN mRNA 308176 308253 0.957199 - . ID=CGI_10013011; scaffold1164 TRF Tandem_Repeat 308176 308253 149 + . . scaffold1164 GLEAN mRNA 309294 309713 0.957199 - . ID=CGI_10013011; scaffold1164 WUBlastX LINE_L1 309294 309713 56 - . . scaffold1164 GLEAN mRNA 309381 309737 0.957199 - . ID=CGI_10013011; scaffold1164 WUBlastX LINE_L1-Tx1 309381 309737 67 - . . scaffold1164 GLEAN mRNA 309381 309674 0.957199 - . ID=CGI_10013011; scaffold1164 WUBlastX LINE_L1-Tx1 309381 309674 97 - . . scaffold1164 GLEAN mRNA 309378 309803 0.957199 - . ID=CGI_10013011; scaffold1164 WUBlastX LINE_L1 309378 309803 23 - . . scaffold1164 GLEAN mRNA 325085 325132 0.958739 - . ID=CGI_10013012; scaffold1164 TRF Tandem_Repeat 325085 325132 69 + . . scaffold358 GLEAN mRNA 9689 9762 0.558382 - . ID=CGI_10013016; scaffold358 TRF Tandem_Repeat 9689 9762 82 + . . scaffold358 GLEAN mRNA 132311 132400 0.861912 - . ID=CGI_10013024; scaffold358 TRF Tandem_Repeat 132311 132400 94 + . . scaffold358 GLEAN mRNA 133329 134180 0.861912 - . ID=CGI_10013024; scaffold358 TRF Tandem_Repeat 133329 134180 780 + . . scaffold358 GLEAN mRNA 133329 134180 0.861912 - . ID=CGI_10013024; scaffold358 TRF Tandem_Repeat 133329 134180 665 + . . scaffold358 GLEAN mRNA 133479 134180 0.861912 - . ID=CGI_10013024; scaffold358 TRF Tandem_Repeat 133479 134180 771 + . . scaffold358 GLEAN mRNA 137155 137307 0.861912 - . ID=CGI_10013024; scaffold358 WUBlastX LINE_RTE-X 137155 137307 68 + . . scaffold358 GLEAN mRNA 137534 137722 0.861912 - . ID=CGI_10013024; scaffold358 WUBlastX LINE_RTE-X 137534 137722 24 + . . scaffold358 GLEAN mRNA 136562 136663 0.861912 - . ID=CGI_10013024; scaffold358 WUBlastX LINE_RTE-X 136562 136663 24 + . . scaffold358 GLEAN mRNA 137549 137704 0.861912 - . ID=CGI_10013024; scaffold358 WUBlastX LINE_RTE-X 137549 137704 40 + . . scaffold358 GLEAN mRNA 137158 137346 0.861912 - . ID=CGI_10013024; scaffold358 WUBlastX LINE_RTE-X 137158 137346 37 + . . scaffold358 GLEAN mRNA 137370 137531 0.861912 - . ID=CGI_10013024; scaffold358 WUBlastX LINE_RTE-X 137370 137531 55 + . . scaffold358 GLEAN mRNA 179973 180042 0.998801 + . ID=CGI_10013027; scaffold358 TRF Tandem_Repeat 179973 180042 131 + . . scaffold358 GLEAN mRNA 186347 186430 0.998801 + . ID=CGI_10013027; scaffold358 TRF Tandem_Repeat 186347 186430 159 + . . scaffold358 GLEAN mRNA 187560 188308 0.998801 + . ID=CGI_10013027; scaffold358 TRF Tandem_Repeat 187560 188308 826 + . . scaffold358 GLEAN mRNA 187560 188308 0.998801 + . ID=CGI_10013027; scaffold358 TRF Tandem_Repeat 187560 188308 843 + . . scaffold358 GLEAN mRNA 291926 292276 0.650922 - . ID=CGI_10013031; scaffold358 TRF Tandem_Repeat 291926 292276 524 + . . scaffold1600 GLEAN mRNA 25354 25395 0.604341 - . ID=CGI_10013033; scaffold1600 TRF Tandem_Repeat 25354 25395 84 + . . scaffold1600 GLEAN mRNA 32042 32099 0.604341 - . ID=CGI_10013033; scaffold1600 TRF Tandem_Repeat 32042 32099 109 + . . scaffold1600 GLEAN mRNA 37054 37119 0.604341 - . ID=CGI_10013033; scaffold1600 TRF Tandem_Repeat 37054 37119 132 + . . scaffold1600 GLEAN mRNA 43553 43608 0.604341 - . ID=CGI_10013033; scaffold1600 TRF Tandem_Repeat 43553 43608 58 + . . scaffold1600 GLEAN mRNA 45089 45229 0.604341 - . ID=CGI_10013033; scaffold1600 TRF Tandem_Repeat 45089 45229 129 + . . scaffold1600 GLEAN mRNA 46228 46341 0.604341 - . ID=CGI_10013033; scaffold1600 TRF Tandem_Repeat 46228 46341 124 + . . scaffold1600 GLEAN mRNA 48734 48774 0.604341 - . ID=CGI_10013033; scaffold1600 TRF Tandem_Repeat 48734 48774 82 + . . scaffold1600 GLEAN mRNA 49291 49320 0.604341 - . ID=CGI_10013033; scaffold1600 TRF Tandem_Repeat 49291 49320 60 + . . scaffold1600 GLEAN mRNA 50684 51057 0.604341 - . ID=CGI_10013033; scaffold1600 TRF Tandem_Repeat 50684 51057 364 + . . scaffold1600 GLEAN mRNA 51127 51457 0.604341 - . ID=CGI_10013033; scaffold1600 TRF Tandem_Repeat 51127 51457 509 + . . scaffold1600 GLEAN mRNA 54238 54283 0.604341 - . ID=CGI_10013033; scaffold1600 TRF Tandem_Repeat 54238 54283 92 + . . scaffold1600 GLEAN mRNA 57734 57774 0.604341 - . ID=CGI_10013033; scaffold1600 TRF Tandem_Repeat 57734 57774 73 + . . scaffold1600 GLEAN mRNA 88599 88634 0.999676 - . ID=CGI_10013035; scaffold1600 TRF Tandem_Repeat 88599 88634 72 + . . scaffold1600 GLEAN mRNA 97784 97824 0.99989 + . ID=CGI_10013036; scaffold1600 TRF Tandem_Repeat 97784 97824 66 + . . scaffold1600 GLEAN mRNA 112990 113298 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 112990 113298 246 + . . scaffold1600 GLEAN mRNA 112991 113304 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 112991 113304 260 + . . scaffold1600 GLEAN mRNA 114990 115140 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 114990 115140 151 + . . scaffold1600 GLEAN mRNA 114992 115169 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 114992 115169 126 + . . scaffold1600 GLEAN mRNA 117954 118027 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 117954 118027 121 + . . scaffold1600 GLEAN mRNA 126234 126287 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 126234 126287 99 + . . scaffold1600 GLEAN mRNA 128739 128791 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 128739 128791 97 + . . scaffold1600 GLEAN mRNA 129016 129074 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 129016 129074 118 + . . scaffold1600 GLEAN mRNA 134592 134640 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 134592 134640 98 + . . scaffold1600 GLEAN mRNA 138697 139012 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 138697 139012 348 + . . scaffold1600 GLEAN mRNA 145070 145118 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 145070 145118 98 + . . scaffold1600 GLEAN mRNA 158351 159449 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 158351 159449 1034 + . . scaffold1600 GLEAN mRNA 158398 158502 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 158398 158502 61 + . . scaffold1600 GLEAN mRNA 158460 159709 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 158460 159709 712 + . . scaffold1600 GLEAN mRNA 158770 159449 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 158770 159449 801 + . . scaffold1600 GLEAN mRNA 158766 159441 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 158766 159441 750 + . . scaffold1600 GLEAN mRNA 159462 159741 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 159462 159741 411 + . . scaffold1600 GLEAN mRNA 164818 164932 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 164818 164932 81 + . . scaffold1600 GLEAN mRNA 164823 164932 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 164823 164932 94 + . . scaffold1600 GLEAN mRNA 185827 185988 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 185827 185988 56 + . . scaffold1600 GLEAN mRNA 185382 185555 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 185382 185555 21 + . . scaffold1600 GLEAN mRNA 184624 184776 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 184624 184776 33 + . . scaffold1600 GLEAN mRNA 184660 184761 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 184660 184761 36 + . . scaffold1600 GLEAN mRNA 184574 184669 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 184574 184669 22 + . . scaffold1600 GLEAN mRNA 185827 186168 0.98626 + . ID=CGI_10013038; scaffold1600 WUBlastX LTR_DIRS 185827 186168 55 + . . scaffold1600 GLEAN mRNA 190284 191368 0.996574 - . ID=CGI_10013039; scaffold1600 TRF Tandem_Repeat 190284 191368 1753 + . . scaffold1600 GLEAN mRNA 185827 185988 0.996574 - . ID=CGI_10013039; scaffold1600 WUBlastX LTR_DIRS 185827 185988 56 + . . scaffold1600 GLEAN mRNA 196007 196168 0.996574 - . ID=CGI_10013039; scaffold1600 WUBlastX LINE_RTE-BovB 196007 196168 52 + . . scaffold1600 GLEAN mRNA 185382 185555 0.996574 - . ID=CGI_10013039; scaffold1600 WUBlastX LTR_DIRS 185382 185555 21 + . . scaffold1600 GLEAN mRNA 194791 195834 0.996574 - . ID=CGI_10013039; scaffold1600 WUBlastX LINE_Proto2 194791 195834 40 + . . scaffold1600 GLEAN mRNA 184624 184776 0.996574 - . ID=CGI_10013039; scaffold1600 WUBlastX LTR_DIRS 184624 184776 33 + . . scaffold1600 GLEAN mRNA 194965 196134 0.996574 - . ID=CGI_10013039; scaffold1600 WUBlastX LINE_RTE-BovB 194965 196134 756 + . . scaffold1600 GLEAN mRNA 184660 184761 0.996574 - . ID=CGI_10013039; scaffold1600 WUBlastX LTR_DIRS 184660 184761 36 + . . scaffold1600 GLEAN mRNA 184574 184669 0.996574 - . ID=CGI_10013039; scaffold1600 WUBlastX LTR_DIRS 184574 184669 22 + . . scaffold1600 GLEAN mRNA 185827 186168 0.996574 - . ID=CGI_10013039; scaffold1600 WUBlastX LTR_DIRS 185827 186168 55 + . . scaffold1600 GLEAN mRNA 204520 204564 0.593383 + . ID=CGI_10013040; scaffold1600 TRF Tandem_Repeat 204520 204564 54 + . . scaffold1600 GLEAN mRNA 204776 204812 0.593383 + . ID=CGI_10013040; scaffold1600 TRF Tandem_Repeat 204776 204812 74 + . . scaffold1600 GLEAN mRNA 238907 239195 0.99867 + . ID=CGI_10013044; scaffold1600 TRF Tandem_Repeat 238907 239195 485 + . . scaffold1600 GLEAN mRNA 244214 244258 0.99867 + . ID=CGI_10013044; scaffold1600 TRF Tandem_Repeat 244214 244258 90 + . . scaffold1600 GLEAN mRNA 245600 245653 0.99867 + . ID=CGI_10013044; scaffold1600 TRF Tandem_Repeat 245600 245653 99 + . . scaffold1600 GLEAN mRNA 276173 276202 0.449848 + . ID=CGI_10013045; scaffold1600 TRF Tandem_Repeat 276173 276202 60 + . . scaffold1600 GLEAN mRNA 276458 276491 0.449848 + . ID=CGI_10013045; scaffold1600 TRF Tandem_Repeat 276458 276491 68 + . . scaffold1600 GLEAN mRNA 289264 289289 0.999999 - . ID=CGI_10013046; scaffold1600 TRF Tandem_Repeat 289264 289289 52 + . . scaffold1600 GLEAN mRNA 296940 296984 0.999999 - . ID=CGI_10013046; scaffold1600 TRF Tandem_Repeat 296940 296984 90 + . . scaffold43836 GLEAN mRNA 78310 78426 0.999676 + . ID=CGI_10013051; scaffold43836 TRF Tandem_Repeat 78310 78426 62 + . . scaffold43836 GLEAN mRNA 91396 91454 0.999348 + . ID=CGI_10013053; scaffold43836 TRF Tandem_Repeat 91396 91454 118 + . . scaffold43836 GLEAN mRNA 204958 205016 0.997691 + . ID=CGI_10013059; scaffold43836 TRF Tandem_Repeat 204958 205016 118 + . . scaffold43836 GLEAN mRNA 237003 237581 0.999128 + . ID=CGI_10013061; scaffold43836 TRF Tandem_Repeat 237003 237581 448 + . . scaffold43836 GLEAN mRNA 237265 237527 0.999128 + . ID=CGI_10013061; scaffold43836 TRF Tandem_Repeat 237265 237527 187 + . . scaffold43836 GLEAN mRNA 237442 237597 0.999128 + . ID=CGI_10013061; scaffold43836 TRF Tandem_Repeat 237442 237597 125 + . . scaffold43836 GLEAN mRNA 242211 242263 0.999128 + . ID=CGI_10013061; scaffold43836 TRF Tandem_Repeat 242211 242263 106 + . . scaffold43836 GLEAN mRNA 244388 245335 0.999128 + . ID=CGI_10013061; scaffold43836 WUBlastX LINE_CR1 244388 245335 88 - . . scaffold43836 GLEAN mRNA 243749 245176 0.999128 + . ID=CGI_10013061; scaffold43836 WUBlastX LINE_RTE-X 243749 245176 499 - . . scaffold43836 GLEAN mRNA 244388 245335 0.650911 - . ID=CGI_10013062; scaffold43836 WUBlastX LINE_CR1 244388 245335 88 - . . scaffold43836 GLEAN mRNA 243749 245176 0.650911 - . ID=CGI_10013062; scaffold43836 WUBlastX LINE_RTE-X 243749 245176 499 - . . scaffold43836 GLEAN mRNA 248848 249804 0.650911 - . ID=CGI_10013062; scaffold43836 WUBlastX LINE_RTE-X 248848 249804 157 + . . scaffold43836 GLEAN mRNA 248439 248681 0.650911 - . ID=CGI_10013062; scaffold43836 WUBlastX LINE_RTE-X 248439 248681 120 + . . scaffold43836 GLEAN mRNA 248636 248827 0.650911 - . ID=CGI_10013062; scaffold43836 WUBlastX LINE_RTE-X 248636 248827 128 + . . scaffold43836 GLEAN mRNA 259543 259609 0.240295 - . ID=CGI_10013064; scaffold43836 TRF Tandem_Repeat 259543 259609 53 + . . scaffold43836 GLEAN mRNA 261464 261498 0.240295 - . ID=CGI_10013064; scaffold43836 TRF Tandem_Repeat 261464 261498 70 + . . scaffold1000 GLEAN mRNA 23239 23287 0.645529 + . ID=CGI_10013066; scaffold1000 TRF Tandem_Repeat 23239 23287 89 + . . scaffold1000 GLEAN mRNA 24551 24605 0.645529 + . ID=CGI_10013066; scaffold1000 TRF Tandem_Repeat 24551 24605 110 + . . scaffold1000 GLEAN mRNA 76987 77061 0.735899 + . ID=CGI_10013070; scaffold1000 TRF Tandem_Repeat 76987 77061 98 + . . scaffold1000 GLEAN mRNA 116896 116960 0.935775 + . ID=CGI_10013073; scaffold1000 TRF Tandem_Repeat 116896 116960 51 + . . scaffold1000 GLEAN mRNA 118011 118125 0.935775 + . ID=CGI_10013073; scaffold1000 TRF Tandem_Repeat 118011 118125 122 + . . scaffold1000 GLEAN mRNA 150540 150583 0.989263 + . ID=CGI_10013075; scaffold1000 TRF Tandem_Repeat 150540 150583 61 + . . scaffold1000 GLEAN mRNA 147491 147811 0.989263 + . ID=CGI_10013075; scaffold1000 WUBlastX LINE_CR1 147491 147811 50 + . . scaffold1000 GLEAN mRNA 147890 148054 0.989263 + . ID=CGI_10013075; scaffold1000 WUBlastX LINE_CR1-L2 147890 148054 65 + . . scaffold1000 GLEAN mRNA 147366 147653 0.989263 + . ID=CGI_10013075; scaffold1000 WUBlastX LINE_CR1 147366 147653 91 + . . scaffold1000 GLEAN mRNA 180933 181063 1 - . ID=CGI_10013077; scaffold1000 TRF Tandem_Repeat 180933 181063 148 + . . scaffold1000 GLEAN mRNA 180933 181063 1 - . ID=CGI_10013077; scaffold1000 TRF Tandem_Repeat 180933 181063 174 + . . scaffold1000 GLEAN mRNA 181308 181341 1 - . ID=CGI_10013077; scaffold1000 TRF Tandem_Repeat 181308 181341 59 + . . scaffold1000 GLEAN mRNA 182253 182280 1 - . ID=CGI_10013077; scaffold1000 TRF Tandem_Repeat 182253 182280 56 + . . scaffold1000 GLEAN mRNA 182548 182643 1 - . ID=CGI_10013077; scaffold1000 TRF Tandem_Repeat 182548 182643 101 + . . scaffold1000 GLEAN mRNA 182524 182641 1 - . ID=CGI_10013077; scaffold1000 TRF Tandem_Repeat 182524 182641 157 + . . scaffold1000 GLEAN mRNA 256332 256365 0.650465 + . ID=CGI_10013084; scaffold1000 TRF Tandem_Repeat 256332 256365 59 + . . scaffold1000 GLEAN mRNA 256790 256885 0.650465 + . ID=CGI_10013084; scaffold1000 WUBlastX DNA_hAT-Ac 256790 256885 31 + . . scaffold1000 GLEAN mRNA 256886 257053 0.650465 + . ID=CGI_10013084; scaffold1000 WUBlastX DNA_hAT 256886 257053 49 + . . scaffold1000 GLEAN mRNA 256913 257173 0.650465 + . ID=CGI_10013084; scaffold1000 WUBlastX DNA_hAT-Ac 256913 257173 64 + . . scaffold1000 GLEAN mRNA 256748 256888 0.650465 + . ID=CGI_10013084; scaffold1000 WUBlastX DNA_hAT-Ac 256748 256888 23 + . . scaffold1000 GLEAN mRNA 256832 257185 0.650465 + . ID=CGI_10013084; scaffold1000 WUBlastX DNA_hAT-Ac 256832 257185 44 + . . scaffold1000 GLEAN mRNA 262736 262804 0.650465 + . ID=CGI_10013084; scaffold1000 TRF Tandem_Repeat 262736 262804 120 + . . scaffold1000 GLEAN mRNA 262746 262804 0.650465 + . ID=CGI_10013084; scaffold1000 TRF Tandem_Repeat 262746 262804 82 + . . scaffold1000 GLEAN mRNA 273528 273707 0.558382 - . ID=CGI_10013085; scaffold1000 WUBlastX LTR_ERV1 273528 273740 44 - . . scaffold1000 GLEAN mRNA 296377 296597 0.99963 - . ID=CGI_10013088; scaffold1000 TRF Tandem_Repeat 296377 296597 320 + . . scaffold1000 GLEAN mRNA 299410 299442 0.99963 - . ID=CGI_10013088; scaffold1000 TRF Tandem_Repeat 299410 299442 66 + . . scaffold1000 GLEAN mRNA 304180 304234 0.99963 - . ID=CGI_10013088; scaffold1000 TRF Tandem_Repeat 304180 304234 110 + . . scaffold1000 GLEAN mRNA 304180 304234 1 + . ID=CGI_10013089; scaffold1000 TRF Tandem_Repeat 304180 304234 110 + . . scaffold43842 GLEAN mRNA 496 521 1 - . ID=CGI_10013092; scaffold43842 TRF Tandem_Repeat 317 521 351 + . . scaffold43842 GLEAN mRNA 2802 2854 1 - . ID=CGI_10013092; scaffold43842 TRF Tandem_Repeat 2802 2854 79 + . . scaffold43842 GLEAN mRNA 12260 12316 0.911226 + . ID=CGI_10013093; scaffold43842 TRF Tandem_Repeat 12260 12316 105 + . . scaffold43842 GLEAN mRNA 24047 24087 0.961876 - . ID=CGI_10013094; scaffold43842 TRF Tandem_Repeat 24047 24087 82 + . . scaffold43842 GLEAN mRNA 24085 24125 0.961876 - . ID=CGI_10013094; scaffold43842 TRF Tandem_Repeat 24085 24125 82 + . . scaffold43842 GLEAN mRNA 28426 28851 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 28426 28851 525 + . . scaffold43842 GLEAN mRNA 28506 28609 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 28506 28609 64 + . . scaffold43842 GLEAN mRNA 28426 28819 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 28426 28819 519 + . . scaffold43842 GLEAN mRNA 29227 29892 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 29227 29892 1118 + . . scaffold43842 GLEAN mRNA 30930 31161 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 30930 31161 392 + . . scaffold43842 GLEAN mRNA 36782 37851 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 36782 37851 1122 + . . scaffold43842 GLEAN mRNA 38928 40433 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 38928 40433 2128 + . . scaffold43842 GLEAN mRNA 39877 39961 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 39877 39961 52 + . . scaffold43842 GLEAN mRNA 40101 40150 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 40101 40150 50 + . . scaffold43842 GLEAN mRNA 42237 42519 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 42237 42519 471 + . . scaffold43842 GLEAN mRNA 45479 45845 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 45479 45845 635 + . . scaffold43842 GLEAN mRNA 47953 48452 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 47953 48452 501 + . . scaffold43842 GLEAN mRNA 48152 48415 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 48152 48415 187 + . . scaffold43842 GLEAN mRNA 48101 48556 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 48101 48556 382 + . . scaffold43842 GLEAN mRNA 49924 50870 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 49924 50870 838 + . . scaffold43842 GLEAN mRNA 51373 51808 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 51373 51808 710 + . . scaffold43842 GLEAN mRNA 52673 52728 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 52673 52728 112 + . . scaffold43842 GLEAN mRNA 53553 53933 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 53553 53933 439 + . . scaffold43842 GLEAN mRNA 53530 53933 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 53530 53933 357 + . . scaffold43842 GLEAN mRNA 56831 57324 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 56831 57324 362 + . . scaffold43842 GLEAN mRNA 56845 57324 0.872516 + . ID=CGI_10013096; scaffold43842 TRF Tandem_Repeat 56845 57324 498 + . . scaffold43842 GLEAN mRNA 65738 65775 1 + . ID=CGI_10013097; scaffold43842 TRF Tandem_Repeat 65738 65775 76 + . . scaffold43842 GLEAN mRNA 66033 66060 1 + . ID=CGI_10013097; scaffold43842 TRF Tandem_Repeat 66033 66060 56 + . . scaffold43842 GLEAN mRNA 68053 68110 1 + . ID=CGI_10013097; scaffold43842 TRF Tandem_Repeat 68053 68110 116 + . . scaffold43842 GLEAN mRNA 66542 66853 1 + . ID=CGI_10013097; scaffold43842 WUBlastX LINE_RTE-BovB 66542 66853 186 - . . scaffold43842 GLEAN mRNA 76893 77091 0.648288 + . ID=CGI_10013098; scaffold43842 TRF Tandem_Repeat 76893 77091 344 + . . scaffold43842 GLEAN mRNA 77320 77364 0.648288 + . ID=CGI_10013098; scaffold43842 TRF Tandem_Repeat 77320 77364 90 + . . scaffold43842 GLEAN mRNA 90226 90386 0.648288 + . ID=CGI_10013098; scaffold43842 TRF Tandem_Repeat 90226 90386 173 + . . scaffold43842 GLEAN mRNA 90226 90386 0.648288 + . ID=CGI_10013098; scaffold43842 TRF Tandem_Repeat 90226 90386 202 + . . scaffold43842 GLEAN mRNA 95699 95761 0.648288 + . ID=CGI_10013098; scaffold43842 TRF Tandem_Repeat 95699 95761 126 + . . scaffold43842 GLEAN mRNA 96581 97356 0.648288 + . ID=CGI_10013098; scaffold43842 TRF Tandem_Repeat 96581 97356 801 + . . scaffold43842 GLEAN mRNA 96582 97353 0.648288 + . ID=CGI_10013098; scaffold43842 TRF Tandem_Repeat 96582 97353 586 + . . scaffold43842 GLEAN mRNA 96581 97356 0.648288 + . ID=CGI_10013098; scaffold43842 TRF Tandem_Repeat 96581 97356 778 + . . scaffold43842 GLEAN mRNA 101226 102054 0.87872 - . ID=CGI_10013099; scaffold43842 TRF Tandem_Repeat 101226 102054 850 + . . scaffold43842 GLEAN mRNA 101247 102156 0.87872 - . ID=CGI_10013099; scaffold43842 TRF Tandem_Repeat 101247 102156 373 + . . scaffold43842 GLEAN mRNA 102230 102323 0.87872 - . ID=CGI_10013099; scaffold43842 TRF Tandem_Repeat 102230 102323 64 + . . scaffold43842 GLEAN mRNA 103783 103894 0.87872 - . ID=CGI_10013099; scaffold43842 TRF Tandem_Repeat 103783 103894 152 + . . scaffold43842 GLEAN mRNA 105976 106438 0.87872 - . ID=CGI_10013099; scaffold43842 TRF Tandem_Repeat 105976 106438 793 + . . scaffold43842 GLEAN mRNA 115923 115956 0.999887 + . ID=CGI_10013100; scaffold43842 TRF Tandem_Repeat 115923 115956 68 + . . scaffold43842 GLEAN mRNA 115956 115995 0.999887 + . ID=CGI_10013100; scaffold43842 TRF Tandem_Repeat 115956 115995 80 + . . scaffold43842 GLEAN mRNA 116610 116650 0.999887 + . ID=CGI_10013100; scaffold43842 TRF Tandem_Repeat 116610 116650 82 + . . scaffold43842 GLEAN mRNA 117265 117316 0.999887 + . ID=CGI_10013100; scaffold43842 TRF Tandem_Repeat 117265 117316 104 + . . scaffold43842 GLEAN mRNA 119695 119778 0.999887 + . ID=CGI_10013100; scaffold43842 TRF Tandem_Repeat 119695 119778 159 + . . scaffold43842 GLEAN mRNA 121175 122145 0.999887 + . ID=CGI_10013100; scaffold43842 TRF Tandem_Repeat 121175 122145 1621 + . . scaffold43842 GLEAN mRNA 133632 133671 0.592188 - . ID=CGI_10013102; scaffold43842 TRF Tandem_Repeat 133632 133671 80 + . . scaffold43842 GLEAN mRNA 138896 139658 0.592188 - . ID=CGI_10013102; scaffold43842 TRF Tandem_Repeat 138896 139658 1040 + . . scaffold43842 GLEAN mRNA 130401 131182 0.592188 - . ID=CGI_10013102; scaffold43842 TRF Tandem_Repeat 130401 131182 1044 + . . scaffold43842 GLEAN mRNA 170886 170925 0.37168 - . ID=CGI_10013103; scaffold43842 TRF Tandem_Repeat 170886 170925 71 + . . scaffold43842 GLEAN mRNA 171996 172125 0.37168 - . ID=CGI_10013103; scaffold43842 TRF Tandem_Repeat 171996 172125 137 + . . scaffold43842 GLEAN mRNA 192147 192671 0.99996 + . ID=CGI_10013104; scaffold43842 WUBlastX LINE_L2 192147 192671 91 - . . scaffold43842 GLEAN mRNA 191790 192554 0.99996 + . ID=CGI_10013104; scaffold43842 WUBlastX LINE_L2 191790 192554 273 - . . scaffold43842 GLEAN mRNA 195593 195811 0.99996 + . ID=CGI_10013104; scaffold43842 WUBlastX LINE_RTE-X 195593 195811 31 + . . scaffold43842 GLEAN mRNA 195593 195772 0.99996 + . ID=CGI_10013104; scaffold43842 WUBlastX LINE_RTE-X 195593 195772 47 + . . scaffold43842 GLEAN mRNA 193262 193540 0.99996 + . ID=CGI_10013104; scaffold43842 WUBlastX LINE_RTE-X 193262 193540 99 + . . scaffold43842 GLEAN mRNA 193494 194351 0.99996 + . ID=CGI_10013104; scaffold43842 WUBlastX LINE_RTE-X 193494 194351 359 + . . scaffold43842 GLEAN mRNA 212604 212661 0.557237 - . ID=CGI_10013105; scaffold43842 TRF Tandem_Repeat 212604 212661 57 + . . scaffold43842 GLEAN mRNA 212625 212700 0.557237 - . ID=CGI_10013105; scaffold43842 TRF Tandem_Repeat 212625 212700 63 + . . scaffold43842 GLEAN mRNA 212605 212711 0.557237 - . ID=CGI_10013105; scaffold43842 TRF Tandem_Repeat 212605 212711 60 + . . scaffold43842 GLEAN mRNA 218788 219501 0.557237 - . ID=CGI_10013105; scaffold43842 WUBlastX LINE_RTE-X 218788 219501 151 - . . scaffold43842 GLEAN mRNA 219879 220829 0.557237 - . ID=CGI_10013105; scaffold43842 WUBlastX LINE_RTE-X 219879 220829 643 - . . scaffold43842 GLEAN mRNA 221138 221485 0.557237 - . ID=CGI_10013105; scaffold43842 WUBlastX LINE_RTE-X 221138 221485 100 - . . scaffold43842 GLEAN mRNA 221538 222101 0.557237 - . ID=CGI_10013105; scaffold43842 WUBlastX LINE_RTE-X 221538 222101 182 - . . scaffold43842 GLEAN mRNA 219427 219549 0.557237 - . ID=CGI_10013105; scaffold43842 WUBlastX LINE_CR1 219427 219549 30 - . . scaffold43842 GLEAN mRNA 219969 221180 0.557237 - . ID=CGI_10013105; scaffold43842 WUBlastX LINE_RTE-X 219969 221180 210 - . . scaffold43842 GLEAN mRNA 219624 220832 0.557237 - . ID=CGI_10013105; scaffold43842 WUBlastX LINE_L2 219624 220832 104 - . . scaffold43842 GLEAN mRNA 223132 223215 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX LINE_RTE-BovB 223132 223215 29 - . . scaffold43842 GLEAN mRNA 234111 234145 0.997279 - . ID=CGI_10013106; scaffold43842 TRF Tandem_Repeat 234111 234145 70 + . . scaffold43842 GLEAN mRNA 241007 241046 0.997279 - . ID=CGI_10013106; scaffold43842 TRF Tandem_Repeat 241007 241046 80 + . . scaffold43842 GLEAN mRNA 249359 249526 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249359 249526 35 + . . scaffold43842 GLEAN mRNA 249984 250190 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249984 250190 104 + . . scaffold43842 GLEAN mRNA 248475 248834 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 248475 248834 50 + . . scaffold43842 GLEAN mRNA 249984 250238 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249984 250238 69 + . . scaffold43842 GLEAN mRNA 249662 249715 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249662 249715 29 + . . scaffold43842 GLEAN mRNA 249721 249906 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX DNA_IS4EU 249721 249906 54 + . . scaffold43842 GLEAN mRNA 241007 241046 0.526049 + . ID=CGI_10013107; scaffold43842 TRF Tandem_Repeat 241007 241046 80 + . . scaffold43842 GLEAN mRNA 257555 257678 0.526049 + . ID=CGI_10013107; scaffold43842 TRF Tandem_Repeat 257555 257678 212 + . . scaffold43842 GLEAN mRNA 259782 259889 0.526049 + . ID=CGI_10013107; scaffold43842 TRF Tandem_Repeat 259782 259889 180 + . . scaffold43842 GLEAN mRNA 260574 260811 0.526049 + . ID=CGI_10013107; scaffold43842 TRF Tandem_Repeat 260574 260811 231 + . . scaffold43842 GLEAN mRNA 249359 249526 0.526049 + . ID=CGI_10013107; scaffold43842 WUBlastX DNA_IS4EU 249359 249526 35 + . . scaffold43842 GLEAN mRNA 249984 250190 0.526049 + . ID=CGI_10013107; scaffold43842 WUBlastX DNA_IS4EU 249984 250190 104 + . . scaffold43842 GLEAN mRNA 248475 248834 0.526049 + . ID=CGI_10013107; scaffold43842 WUBlastX DNA_IS4EU 248475 248834 50 + . . scaffold43842 GLEAN mRNA 249984 250238 0.526049 + . ID=CGI_10013107; scaffold43842 WUBlastX DNA_IS4EU 249984 250238 69 + . . scaffold43842 GLEAN mRNA 249662 249715 0.526049 + . ID=CGI_10013107; scaffold43842 WUBlastX DNA_IS4EU 249662 249715 29 + . . scaffold43842 GLEAN mRNA 249721 249906 0.526049 + . ID=CGI_10013107; scaffold43842 WUBlastX DNA_IS4EU 249721 249906 54 + . . scaffold43842 GLEAN mRNA 260574 260811 0.999373 - . ID=CGI_10013108; scaffold43842 TRF Tandem_Repeat 260574 260811 231 + . . scaffold43842 GLEAN mRNA 265500 265737 0.999373 - . ID=CGI_10013108; scaffold43842 TRF Tandem_Repeat 265500 265737 230 + . . scaffold43842 GLEAN mRNA 269625 269672 0.999373 - . ID=CGI_10013108; scaffold43842 TRF Tandem_Repeat 269625 269672 87 + . . scaffold43842 GLEAN mRNA 283143 283201 0.447101 - . ID=CGI_10013110; scaffold43842 TRF Tandem_Repeat 283143 283201 109 + . . scaffold43842 GLEAN mRNA 285763 285904 0.447101 - . ID=CGI_10013110; scaffold43842 TRF Tandem_Repeat 285763 285904 214 + . . scaffold43842 GLEAN mRNA 283143 283201 0.843996 + . ID=CGI_10013111; scaffold43842 TRF Tandem_Repeat 283143 283201 109 + . . scaffold43842 GLEAN mRNA 285763 285904 0.843996 + . ID=CGI_10013111; scaffold43842 TRF Tandem_Repeat 285763 285904 214 + . . scaffold43842 GLEAN mRNA 339586 339783 0.866307 - . ID=CGI_10013114; scaffold43842 WUBlastX LINE_RTE-X 339586 339963 43 - . . scaffold1252 GLEAN mRNA 7173 7324 0.201897 + . ID=CGI_10013115; scaffold1252 TRF Tandem_Repeat 7173 7324 187 + . . scaffold1252 GLEAN mRNA 99968 100058 0.999947 + . ID=CGI_10013116; scaffold1252 TRF Tandem_Repeat 99968 100058 110 + . . scaffold1252 GLEAN mRNA 106514 106567 0.999947 + . ID=CGI_10013116; scaffold1252 TRF Tandem_Repeat 106514 106567 99 + . . scaffold1252 GLEAN mRNA 125979 126009 0.999799 + . ID=CGI_10013117; scaffold1252 TRF Tandem_Repeat 125979 126009 53 + . . scaffold1252 GLEAN mRNA 125979 126013 0.999799 + . ID=CGI_10013117; scaffold1252 TRF Tandem_Repeat 125979 126013 52 + . . scaffold1252 GLEAN mRNA 126011 126229 0.999799 + . ID=CGI_10013117; scaffold1252 TRF Tandem_Repeat 126011 126229 377 + . . scaffold1252 GLEAN mRNA 153401 154438 1 - . ID=CGI_10013119; scaffold1252 TRF Tandem_Repeat 153401 154438 1872 + . . scaffold1252 GLEAN mRNA 154599 154640 1 - . ID=CGI_10013119; scaffold1252 TRF Tandem_Repeat 154599 154640 56 + . . scaffold1252 GLEAN mRNA 160139 160250 1 - . ID=CGI_10013119; scaffold1252 TRF Tandem_Repeat 160139 160250 197 + . . scaffold1252 GLEAN mRNA 263981 264215 1 + . ID=CGI_10013121; scaffold1252 TRF Tandem_Repeat 263981 264215 164 + . . scaffold1252 GLEAN mRNA 265588 265708 1 + . ID=CGI_10013121; scaffold1252 TRF Tandem_Repeat 265588 265708 169 + . . scaffold1252 GLEAN mRNA 267984 268038 1 + . ID=CGI_10013121; scaffold1252 TRF Tandem_Repeat 267984 268038 110 + . . scaffold1252 GLEAN mRNA 298862 298916 0.93602 - . ID=CGI_10013124; scaffold1252 TRF Tandem_Repeat 298862 298916 110 + . . scaffold1252 GLEAN mRNA 299444 300425 0.93602 - . ID=CGI_10013124; scaffold1252 TRF Tandem_Repeat 299444 300425 1319 + . . scaffold1252 GLEAN mRNA 304045 304162 0.93602 - . ID=CGI_10013124; scaffold1252 TRF Tandem_Repeat 304045 304162 69 + . . scaffold1252 GLEAN mRNA 304779 304844 0.93602 - . ID=CGI_10013124; scaffold1252 TRF Tandem_Repeat 304779 304844 98 + . . scaffold1252 GLEAN mRNA 329860 331114 0.93602 - . ID=CGI_10013124; scaffold1252 TRF Tandem_Repeat 329860 331114 1748 + . . scaffold1252 GLEAN mRNA 332340 332397 0.93602 - . ID=CGI_10013124; scaffold1252 TRF Tandem_Repeat 332340 332397 73 + . . scaffold1252 GLEAN mRNA 332340 332391 0.93602 - . ID=CGI_10013124; scaffold1252 TRF Tandem_Repeat 332340 332391 86 + . . scaffold1252 GLEAN mRNA 341518 341552 0.93602 - . ID=CGI_10013124; scaffold1252 TRF Tandem_Repeat 341518 341552 70 + . . scaffold1252 GLEAN mRNA 341848 342546 0.93602 - . ID=CGI_10013124; scaffold1252 WUBlastX LINE_RTE-X 341848 342546 212 - . . scaffold908 GLEAN mRNA 40262 40377 0.992071 - . ID=CGI_10013126; scaffold908 TRF Tandem_Repeat 40262 40377 160 + . . scaffold908 GLEAN mRNA 40262 40416 0.992071 - . ID=CGI_10013126; scaffold908 TRF Tandem_Repeat 40262 40416 87 + . . scaffold908 GLEAN mRNA 52163 52232 0.998196 - . ID=CGI_10013127; scaffold908 TRF Tandem_Repeat 52163 52232 124 + . . scaffold908 GLEAN mRNA 53086 53113 0.998196 - . ID=CGI_10013127; scaffold908 TRF Tandem_Repeat 53086 53113 56 + . . scaffold908 GLEAN mRNA 62327 62385 0.849772 - . ID=CGI_10013128; scaffold908 TRF Tandem_Repeat 62327 62385 118 + . . scaffold908 GLEAN mRNA 65808 65877 0.849772 - . ID=CGI_10013128; scaffold908 TRF Tandem_Repeat 65808 65877 61 + . . scaffold908 GLEAN mRNA 66843 66895 0.849772 - . ID=CGI_10013128; scaffold908 TRF Tandem_Repeat 66843 66895 106 + . . scaffold908 GLEAN mRNA 67204 67238 0.849772 - . ID=CGI_10013128; scaffold908 TRF Tandem_Repeat 67204 67238 70 + . . scaffold908 GLEAN mRNA 89402 90242 0.997996 - . ID=CGI_10013129; scaffold908 TRF Tandem_Repeat 89402 90242 944 + . . scaffold908 GLEAN mRNA 89402 90242 0.997996 - . ID=CGI_10013129; scaffold908 TRF Tandem_Repeat 89402 90242 880 + . . scaffold908 GLEAN mRNA 100660 100716 1 + . ID=CGI_10013130; scaffold908 TRF Tandem_Repeat 100660 100716 114 + . . scaffold908 GLEAN mRNA 109482 110044 0.99149 + . ID=CGI_10013131; scaffold908 TRF Tandem_Repeat 109482 110044 650 + . . scaffold908 GLEAN mRNA 116871 117140 0.999999 + . ID=CGI_10013132; scaffold908 TRF Tandem_Repeat 116871 117140 434 + . . scaffold908 GLEAN mRNA 119105 119880 0.999999 + . ID=CGI_10013132; scaffold908 TRF Tandem_Repeat 119105 119880 1282 + . . scaffold908 GLEAN mRNA 132191 132494 0.990126 + . ID=CGI_10013133; scaffold908 TRF Tandem_Repeat 132191 132494 310 + . . scaffold908 GLEAN mRNA 132809 133267 0.990126 + . ID=CGI_10013133; scaffold908 TRF Tandem_Repeat 132809 133267 376 + . . scaffold908 GLEAN mRNA 142542 142603 0.990126 + . ID=CGI_10013133; scaffold908 TRF Tandem_Repeat 142542 142603 90 + . . scaffold908 GLEAN mRNA 186136 186173 0.997734 + . ID=CGI_10013134; scaffold908 TRF Tandem_Repeat 186136 186173 76 + . . scaffold908 GLEAN mRNA 194381 194587 0.997734 + . ID=CGI_10013134; scaffold908 TRF Tandem_Repeat 194381 194587 215 + . . scaffold908 GLEAN mRNA 194422 194588 0.997734 + . ID=CGI_10013134; scaffold908 TRF Tandem_Repeat 194422 194588 88 + . . scaffold908 GLEAN mRNA 194475 194587 0.997734 + . ID=CGI_10013134; scaffold908 TRF Tandem_Repeat 194475 194587 61 + . . scaffold908 GLEAN mRNA 194422 194610 0.997734 + . ID=CGI_10013134; scaffold908 TRF Tandem_Repeat 194422 194610 207 + . . scaffold908 GLEAN mRNA 194722 194925 0.997734 + . ID=CGI_10013134; scaffold908 TRF Tandem_Repeat 194722 194925 60 + . . scaffold908 GLEAN mRNA 208033 208090 0.392203 + . ID=CGI_10013135; scaffold908 TRF Tandem_Repeat 208033 208090 98 + . . scaffold908 GLEAN mRNA 233772 234182 0.999971 - . ID=CGI_10013139; scaffold908 TRF Tandem_Repeat 233772 234182 603 + . . scaffold908 GLEAN mRNA 234399 234658 0.999971 - . ID=CGI_10013139; scaffold908 TRF Tandem_Repeat 234399 234658 358 + . . scaffold908 GLEAN mRNA 234399 234646 0.999971 - . ID=CGI_10013139; scaffold908 TRF Tandem_Repeat 234399 234646 424 + . . scaffold908 GLEAN mRNA 268756 268797 0.385264 + . ID=CGI_10013140; scaffold908 TRF Tandem_Repeat 268756 268797 59 + . . scaffold43844 GLEAN mRNA 31389 31486 0.772929 + . ID=CGI_10013142; scaffold43844 TRF Tandem_Repeat 31389 31486 169 + . . scaffold43844 GLEAN mRNA 142653 142704 0.911331 + . ID=CGI_10013147; scaffold43844 TRF Tandem_Repeat 142653 142704 54 + . . scaffold43844 GLEAN mRNA 140609 140620 0.911331 + . ID=CGI_10013147; scaffold43844 WUBlastX RC_Helitron 140507 140620 37 + . . scaffold43844 GLEAN mRNA 141075 141296 0.911331 + . ID=CGI_10013147; scaffold43844 WUBlastX RC_Helitron 141075 141296 31 + . . scaffold43844 GLEAN mRNA 148168 148266 0.911331 + . ID=CGI_10013147; scaffold43844 TRF Tandem_Repeat 148168 148266 67 + . . scaffold43844 GLEAN mRNA 148167 148266 0.911331 + . ID=CGI_10013147; scaffold43844 TRF Tandem_Repeat 148167 148266 78 + . . scaffold43844 GLEAN mRNA 175501 175641 1 + . ID=CGI_10013150; scaffold43844 TRF Tandem_Repeat 175501 175641 90 + . . scaffold43844 GLEAN mRNA 175543 175642 1 + . ID=CGI_10013150; scaffold43844 TRF Tandem_Repeat 175543 175642 182 + . . scaffold43844 GLEAN mRNA 180186 180246 1 + . ID=CGI_10013150; scaffold43844 TRF Tandem_Repeat 180186 180246 122 + . . scaffold43844 GLEAN mRNA 185088 185325 0.917611 + . ID=CGI_10013151; scaffold43844 TRF Tandem_Repeat 185088 185325 228 + . . scaffold43844 GLEAN mRNA 185089 185379 0.917611 + . ID=CGI_10013151; scaffold43844 TRF Tandem_Repeat 185089 185379 241 + . . scaffold43844 GLEAN mRNA 185214 185379 0.917611 + . ID=CGI_10013151; scaffold43844 TRF Tandem_Repeat 185214 185379 142 + . . scaffold43844 GLEAN mRNA 185935 186198 0.917611 + . ID=CGI_10013151; scaffold43844 WUBlastX DNA_TcMar-Marin 185935 186198 116 + . . scaffold43844 GLEAN mRNA 187252 187656 0.917611 + . ID=CGI_10013151; scaffold43844 WUBlastX DNA_TcMar-Marin 187252 187656 230 + . . scaffold43844 GLEAN mRNA 186729 187061 0.917611 + . ID=CGI_10013151; scaffold43844 WUBlastX DNA_TcMar-Marin 186729 187061 243 + . . scaffold43844 GLEAN mRNA 186675 187070 0.917611 + . ID=CGI_10013151; scaffold43844 WUBlastX DNA_TcMar-Marin 186675 187070 189 + . . scaffold43844 GLEAN mRNA 185935 186333 0.917611 + . ID=CGI_10013151; scaffold43844 WUBlastX DNA_TcMar-Marin 185935 186333 96 + . . scaffold43844 GLEAN mRNA 200028 200073 0.999994 + . ID=CGI_10013152; scaffold43844 TRF Tandem_Repeat 200028 200073 92 + . . scaffold43844 GLEAN mRNA 237323 237374 0.41328 + . ID=CGI_10013154; scaffold43844 TRF Tandem_Repeat 237323 237374 50 + . . scaffold43844 GLEAN mRNA 249262 249305 0.963522 - . ID=CGI_10013155; scaffold43844 TRF Tandem_Repeat 249262 249305 54 + . . scaffold43844 GLEAN mRNA 257867 257969 0.963522 - . ID=CGI_10013155; scaffold43844 TRF Tandem_Repeat 257867 257969 71 + . . scaffold43844 GLEAN mRNA 257839 258352 0.963522 - . ID=CGI_10013155; scaffold43844 TRF Tandem_Repeat 257839 258352 769 + . . scaffold43844 GLEAN mRNA 268711 269335 0.963522 - . ID=CGI_10013155; scaffold43844 TRF Tandem_Repeat 268711 269335 957 + . . scaffold43844 GLEAN mRNA 268711 269335 0.963522 - . ID=CGI_10013155; scaffold43844 TRF Tandem_Repeat 268711 269335 957 + . . scaffold43844 GLEAN mRNA 271279 271353 0.963522 - . ID=CGI_10013155; scaffold43844 TRF Tandem_Repeat 271279 271353 100 + . . scaffold43844 GLEAN mRNA 272122 272180 0.963522 - . ID=CGI_10013155; scaffold43844 TRF Tandem_Repeat 272122 272180 118 + . . scaffold43844 GLEAN mRNA 273358 273394 0.963522 - . ID=CGI_10013155; scaffold43844 TRF Tandem_Repeat 273358 273394 74 + . . scaffold43844 GLEAN mRNA 278483 278565 0.963522 - . ID=CGI_10013155; scaffold43844 TRF Tandem_Repeat 278483 278565 166 + . . scaffold790 GLEAN mRNA 154580 154616 0.911632 + . ID=CGI_10013168; scaffold790 TRF Tandem_Repeat 154580 154616 56 + . . scaffold790 GLEAN mRNA 158965 159252 0.837388 + . ID=CGI_10013169; scaffold790 TRF Tandem_Repeat 158965 159252 354 + . . scaffold790 GLEAN mRNA 173679 173755 0.837388 + . ID=CGI_10013169; scaffold790 TRF Tandem_Repeat 173679 173755 109 + . . scaffold790 GLEAN mRNA 173753 173827 0.837388 + . ID=CGI_10013169; scaffold790 TRF Tandem_Repeat 173753 173827 150 + . . scaffold790 GLEAN mRNA 176268 176566 0.837388 + . ID=CGI_10013169; scaffold790 TRF Tandem_Repeat 176268 176566 287 + . . scaffold790 GLEAN mRNA 176268 176566 0.837388 + . ID=CGI_10013169; scaffold790 TRF Tandem_Repeat 176268 176566 341 + . . scaffold790 GLEAN mRNA 222079 222612 0.977562 - . ID=CGI_10013171; scaffold790 WUBlastX LINE_L1 222079 222612 65 - . . scaffold790 GLEAN mRNA 222214 222879 0.977562 - . ID=CGI_10013171; scaffold790 WUBlastX LINE_L1 222214 222879 85 - . . scaffold790 GLEAN mRNA 222169 222741 0.977562 - . ID=CGI_10013171; scaffold790 WUBlastX LINE_L1 222169 222741 97 - . . scaffold790 GLEAN mRNA 240851 241231 0.83657 + . ID=CGI_10013172; scaffold790 WUBlastX LINE_L2 240851 241231 72 - . . scaffold790 GLEAN mRNA 240671 241042 0.83657 + . ID=CGI_10013172; scaffold790 WUBlastX LINE_L2 240671 241042 130 - . . scaffold790 GLEAN mRNA 240489 240740 0.83657 + . ID=CGI_10013172; scaffold790 WUBlastX LINE_L2 240489 240740 50 - . . scaffold790 GLEAN mRNA 240836 241060 0.83657 + . ID=CGI_10013172; scaffold790 WUBlastX LINE_CR1-L2 240836 241060 197 - . . scaffold790 GLEAN mRNA 240758 241090 0.83657 + . ID=CGI_10013172; scaffold790 WUBlastX LINE_CR1-L2 240758 241090 178 - . . scaffold790 GLEAN mRNA 248192 248234 0.83657 + . ID=CGI_10013172; scaffold790 TRF Tandem_Repeat 248192 248234 86 + . . scaffold790 GLEAN mRNA 268349 268423 0.488232 + . ID=CGI_10013175; scaffold790 TRF Tandem_Repeat 268349 268423 141 + . . scaffold790 GLEAN mRNA 270573 271017 0.488232 + . ID=CGI_10013175; scaffold790 TRF Tandem_Repeat 270573 271017 746 + . . scaffold790 GLEAN mRNA 270573 271183 0.488232 + . ID=CGI_10013175; scaffold790 TRF Tandem_Repeat 270573 271183 817 + . . scaffold790 GLEAN mRNA 270573 271183 0.488232 + . ID=CGI_10013175; scaffold790 TRF Tandem_Repeat 270573 271183 799 + . . scaffold790 GLEAN mRNA 270995 271573 0.488232 + . ID=CGI_10013175; scaffold790 TRF Tandem_Repeat 270995 271573 678 + . . scaffold790 GLEAN mRNA 277782 277850 0.488232 + . ID=CGI_10013175; scaffold790 TRF Tandem_Repeat 277782 277850 138 + . . scaffold790 GLEAN mRNA 289446 290452 0.992511 - . ID=CGI_10013176; scaffold790 TRF Tandem_Repeat 289446 290452 1362 + . . scaffold790 GLEAN mRNA 293072 293140 0.992511 - . ID=CGI_10013176; scaffold790 TRF Tandem_Repeat 293072 293140 75 + . . scaffold790 GLEAN mRNA 295566 295824 0.992511 - . ID=CGI_10013176; scaffold790 TRF Tandem_Repeat 295566 295824 394 + . . scaffold790 GLEAN mRNA 294196 295547 0.992511 - . ID=CGI_10013176; scaffold790 TRF Tandem_Repeat 294196 295547 2013 + . . scaffold1870 GLEAN mRNA 90233 90271 0.590785 + . ID=CGI_10013181; scaffold1870 TRF Tandem_Repeat 90233 90271 60 + . . scaffold1870 GLEAN mRNA 90342 90366 0.590785 + . ID=CGI_10013181; scaffold1870 TRF Tandem_Repeat 90342 90366 50 + . . scaffold1870 GLEAN mRNA 92643 93045 0.590785 + . ID=CGI_10013181; scaffold1870 TRF Tandem_Repeat 92643 93045 572 + . . scaffold1870 GLEAN mRNA 97026 97520 0.283709 - . ID=CGI_10013182; scaffold1870 WUBlastX LINE_L1 97026 97520 22 - . . scaffold1870 GLEAN mRNA 110284 110415 0.283709 - . ID=CGI_10013182; scaffold1870 WUBlastX LINE_RTE-X 110284 110415 57 + . . scaffold1870 GLEAN mRNA 110302 110475 0.283709 - . ID=CGI_10013182; scaffold1870 WUBlastX LINE_RTE-X 110302 110475 28 + . . scaffold1870 GLEAN mRNA 109821 110237 0.283709 - . ID=CGI_10013182; scaffold1870 WUBlastX LINE_RTE-X 109821 110237 55 + . . scaffold1870 GLEAN mRNA 109683 110138 0.283709 - . ID=CGI_10013182; scaffold1870 WUBlastX LINE_RTE-X 109683 110138 79 + . . scaffold1870 GLEAN mRNA 106335 106598 0.283709 - . ID=CGI_10013182; scaffold1870 WUBlastX LINE_L1-Tx1 106335 106598 22 - . . scaffold1870 GLEAN mRNA 108535 108690 0.283709 - . ID=CGI_10013182; scaffold1870 WUBlastX LINE_RTE-X 108535 108690 20 + . . scaffold1870 GLEAN mRNA 98218 98338 0.283709 - . ID=CGI_10013182; scaffold1870 TRF Tandem_Repeat 98218 98338 138 + . . scaffold1870 GLEAN mRNA 126146 126202 0.738053 + . ID=CGI_10013183; scaffold1870 TRF Tandem_Repeat 126146 126202 107 + . . scaffold1870 GLEAN mRNA 128288 128748 0.738053 + . ID=CGI_10013183; scaffold1870 TRF Tandem_Repeat 128288 128748 537 + . . scaffold1870 GLEAN mRNA 130101 130371 0.738053 + . ID=CGI_10013183; scaffold1870 TRF Tandem_Repeat 130101 130371 436 + . . scaffold1870 GLEAN mRNA 131673 132041 0.738053 + . ID=CGI_10013183; scaffold1870 TRF Tandem_Repeat 131673 132041 616 + . . scaffold1870 GLEAN mRNA 161576 161607 0.612366 - . ID=CGI_10013184; scaffold1870 TRF Tandem_Repeat 161576 161607 64 + . . scaffold1870 GLEAN mRNA 183696 183749 0.639613 - . ID=CGI_10013185; scaffold1870 TRF Tandem_Repeat 183696 183749 108 + . . scaffold1870 GLEAN mRNA 211958 211998 0.440748 + . ID=CGI_10013186; scaffold1870 TRF Tandem_Repeat 211958 211998 82 + . . scaffold1870 GLEAN mRNA 213920 213970 0.440748 + . ID=CGI_10013186; scaffold1870 TRF Tandem_Repeat 213920 213970 93 + . . scaffold1870 GLEAN mRNA 225803 225942 0.440748 + . ID=CGI_10013186; scaffold1870 TRF Tandem_Repeat 225803 225942 271 + . . scaffold1870 GLEAN mRNA 247074 247499 1 - . ID=CGI_10013187; scaffold1870 TRF Tandem_Repeat 247074 247499 647 + . . scaffold1870 GLEAN mRNA 250666 250917 1 + . ID=CGI_10013188; scaffold1870 TRF Tandem_Repeat 250666 250917 164 + . . scaffold1870 GLEAN mRNA 250720 250921 1 + . ID=CGI_10013188; scaffold1870 TRF Tandem_Repeat 250720 250921 154 + . . scaffold1870 GLEAN mRNA 254960 255282 1 - . ID=CGI_10013189; scaffold1870 TRF Tandem_Repeat 254960 255282 407 + . . scaffold1870 GLEAN mRNA 257204 257249 1 - . ID=CGI_10013189; scaffold1870 TRF Tandem_Repeat 257204 257249 92 + . . scaffold1870 GLEAN mRNA 264788 264915 0.997644 - . ID=CGI_10013190; scaffold1870 TRF Tandem_Repeat 264788 264915 76 + . . scaffold1870 GLEAN mRNA 316025 316170 0.889923 - . ID=CGI_10013191; scaffold1870 TRF Tandem_Repeat 316025 316170 222 + . . scaffold1870 GLEAN mRNA 333298 333420 1 - . ID=CGI_10013192; scaffold1870 WUBlastX LTR_Gypsy 333298 333420 20 - . . scaffold13 GLEAN mRNA 7062 7094 0.992455 + . ID=CGI_10013194; scaffold13 TRF Tandem_Repeat 7062 7094 59 + . . scaffold13 GLEAN mRNA 24728 24785 0.999997 - . ID=CGI_10013195; scaffold13 TRF Tandem_Repeat 24728 24785 102 + . . scaffold13 GLEAN mRNA 72427 73363 0.999999 - . ID=CGI_10013198; scaffold13 TRF Tandem_Repeat 72427 73363 1119 + . . scaffold13 GLEAN mRNA 78552 78683 0.999999 - . ID=CGI_10013198; scaffold13 TRF Tandem_Repeat 78552 78683 94 + . . scaffold13 GLEAN mRNA 87408 87799 0.999999 - . ID=CGI_10013198; scaffold13 TRF Tandem_Repeat 87408 87799 651 + . . scaffold13 GLEAN mRNA 87408 87802 0.999999 - . ID=CGI_10013198; scaffold13 TRF Tandem_Repeat 87408 87802 576 + . . scaffold13 GLEAN mRNA 96865 97346 0.558395 + . ID=CGI_10013200; scaffold13 TRF Tandem_Repeat 96865 97346 653 + . . scaffold13 GLEAN mRNA 98029 98244 0.558395 + . ID=CGI_10013200; scaffold13 TRF Tandem_Repeat 98029 98244 243 + . . scaffold13 GLEAN mRNA 98846 99012 0.558395 + . ID=CGI_10013200; scaffold13 TRF Tandem_Repeat 98846 99012 250 + . . scaffold13 GLEAN mRNA 98846 99032 0.558395 + . ID=CGI_10013200; scaffold13 TRF Tandem_Repeat 98846 99032 218 + . . scaffold13 GLEAN mRNA 100409 100523 0.558395 + . ID=CGI_10013200; scaffold13 TRF Tandem_Repeat 100409 100523 94 + . . scaffold13 GLEAN mRNA 106791 107316 0.999981 + . ID=CGI_10013201; scaffold13 TRF Tandem_Repeat 106791 107316 701 + . . scaffold13 GLEAN mRNA 113053 113792 1 + . ID=CGI_10013202; scaffold13 TRF Tandem_Repeat 113053 113792 519 + . . scaffold13 GLEAN mRNA 113057 113792 1 + . ID=CGI_10013202; scaffold13 TRF Tandem_Repeat 113057 113792 626 + . . scaffold13 GLEAN mRNA 116508 116574 1 + . ID=CGI_10013202; scaffold13 TRF Tandem_Repeat 116508 116574 80 + . . scaffold13 GLEAN mRNA 117980 118046 1 + . ID=CGI_10013202; scaffold13 TRF Tandem_Repeat 117980 118046 80 + . . scaffold13 GLEAN mRNA 126592 126987 0.999992 + . ID=CGI_10013204; scaffold13 WUBlastX LINE_Penelope 126592 126987 33 + . . scaffold13 GLEAN mRNA 173581 174089 0.998501 + . ID=CGI_10013207; scaffold13 TRF Tandem_Repeat 173581 174089 493 + . . scaffold13 GLEAN mRNA 174562 174696 0.998501 + . ID=CGI_10013207; scaffold13 TRF Tandem_Repeat 174562 174696 227 + . . scaffold13 GLEAN mRNA 172056 172121 0.998501 + . ID=CGI_10013207; scaffold13 WUBlastX DNA_hAT-Blackja 171969 172121 26 + . . scaffold13 GLEAN mRNA 172275 172496 0.998501 + . ID=CGI_10013207; scaffold13 WUBlastX DNA_hAT-Blackja 172275 172496 46 + . . scaffold13 GLEAN mRNA 180657 180703 0.998501 + . ID=CGI_10013207; scaffold13 TRF Tandem_Repeat 180657 180703 78 + . . scaffold13 GLEAN mRNA 180658 180707 0.998501 + . ID=CGI_10013207; scaffold13 TRF Tandem_Repeat 180658 180707 66 + . . scaffold13 GLEAN mRNA 187467 187500 0.998501 + . ID=CGI_10013207; scaffold13 TRF Tandem_Repeat 187467 187500 68 + . . scaffold13 GLEAN mRNA 192397 193050 0.998501 + . ID=CGI_10013207; scaffold13 WUBlastX DNA_IS4EU 192397 193050 60 + . . scaffold13 GLEAN mRNA 193300 193425 0.998501 + . ID=CGI_10013207; scaffold13 WUBlastX DNA_IS4EU 193300 193425 36 + . . scaffold13 GLEAN mRNA 192130 193032 0.998501 + . ID=CGI_10013207; scaffold13 WUBlastX DNA_IS4EU 192130 193032 28 + . . scaffold1528 GLEAN mRNA 40556 40626 1 - . ID=CGI_10013212; scaffold1528 TRF Tandem_Repeat 40556 40626 133 + . . scaffold1528 GLEAN mRNA 40326 40511 1 - . ID=CGI_10013212; scaffold1528 WUBlastX LINE_RTE-X 40326 40511 53 - . . scaffold1528 GLEAN mRNA 169337 169375 0.35575 - . ID=CGI_10013220; scaffold1528 TRF Tandem_Repeat 169337 169375 78 + . . scaffold1528 GLEAN mRNA 171689 171793 0.35575 - . ID=CGI_10013220; scaffold1528 TRF Tandem_Repeat 171689 171793 167 + . . scaffold1528 GLEAN mRNA 197767 197844 1 - . ID=CGI_10013222; scaffold1528 TRF Tandem_Repeat 197767 197844 52 + . . scaffold1528 GLEAN mRNA 198707 199468 1 - . ID=CGI_10013222; scaffold1528 TRF Tandem_Repeat 198707 199468 1020 + . . scaffold1528 GLEAN mRNA 199585 199610 1 - . ID=CGI_10013222; scaffold1528 TRF Tandem_Repeat 199585 199610 52 + . . scaffold1528 GLEAN mRNA 200972 201034 1 - . ID=CGI_10013222; scaffold1528 TRF Tandem_Repeat 200972 201034 126 + . . scaffold1528 GLEAN mRNA 197767 197844 0.499919 + . ID=CGI_10013223; scaffold1528 TRF Tandem_Repeat 197767 197844 52 + . . scaffold1528 GLEAN mRNA 198707 199468 0.499919 + . ID=CGI_10013223; scaffold1528 TRF Tandem_Repeat 198707 199468 1020 + . . scaffold1528 GLEAN mRNA 199585 199610 0.499919 + . ID=CGI_10013223; scaffold1528 TRF Tandem_Repeat 199585 199610 52 + . . scaffold1528 GLEAN mRNA 200972 201034 0.499919 + . ID=CGI_10013223; scaffold1528 TRF Tandem_Repeat 200972 201034 126 + . . scaffold1528 GLEAN mRNA 215413 216008 0.997473 + . ID=CGI_10013224; scaffold1528 TRF Tandem_Repeat 215413 216008 280 + . . scaffold1528 GLEAN mRNA 215413 215815 0.997473 + . ID=CGI_10013224; scaffold1528 TRF Tandem_Repeat 215413 215815 213 + . . scaffold1528 GLEAN mRNA 215730 215972 0.997473 + . ID=CGI_10013224; scaffold1528 TRF Tandem_Repeat 215730 215972 292 + . . scaffold1528 GLEAN mRNA 242218 242254 0.999675 - . ID=CGI_10013225; scaffold1528 TRF Tandem_Repeat 242218 242254 74 + . . scaffold1528 GLEAN mRNA 244676 244727 0.999675 - . ID=CGI_10013225; scaffold1528 TRF Tandem_Repeat 244676 244727 104 + . . scaffold1528 GLEAN mRNA 272955 272986 0.91002 + . ID=CGI_10013227; scaffold1528 TRF Tandem_Repeat 272955 272986 64 + . . scaffold1528 GLEAN mRNA 283566 283640 0.999103 + . ID=CGI_10013228; scaffold1528 TRF Tandem_Repeat 283566 283640 150 + . . scaffold1528 GLEAN mRNA 284654 284956 0.999103 + . ID=CGI_10013228; scaffold1528 TRF Tandem_Repeat 284654 284956 453 + . . scaffold1528 GLEAN mRNA 286587 286661 0.999103 + . ID=CGI_10013228; scaffold1528 WUBlastX LINE_L1 286587 286661 21 + . . scaffold1528 GLEAN mRNA 295752 295781 0.999039 + . ID=CGI_10013229; scaffold1528 TRF Tandem_Repeat 295752 295781 60 + . . scaffold1528 GLEAN mRNA 301763 302612 0.999039 + . ID=CGI_10013229; scaffold1528 TRF Tandem_Repeat 301763 302612 1179 + . . scaffold1528 GLEAN mRNA 315070 315156 0.999039 + . ID=CGI_10013229; scaffold1528 TRF Tandem_Repeat 315070 315156 167 + . . scaffold1359 GLEAN mRNA 7893 7930 0.4134 - . ID=CGI_10013230; scaffold1359 TRF Tandem_Repeat 7893 7930 76 + . . scaffold1359 GLEAN mRNA 42758 42802 0.742387 - . ID=CGI_10013231; scaffold1359 TRF Tandem_Repeat 42758 42802 90 + . . scaffold1359 GLEAN mRNA 54258 54301 0.742558 - . ID=CGI_10013232; scaffold1359 TRF Tandem_Repeat 54258 54301 54 + . . scaffold1359 GLEAN mRNA 56085 56160 0.742558 - . ID=CGI_10013232; scaffold1359 TRF Tandem_Repeat 56085 56160 143 + . . scaffold1359 GLEAN mRNA 74351 74442 0.805925 + . ID=CGI_10013233; scaffold1359 TRF Tandem_Repeat 74351 74442 157 + . . scaffold1359 GLEAN mRNA 135730 135781 0.654733 + . ID=CGI_10013235; scaffold1359 TRF Tandem_Repeat 135730 135781 104 + . . scaffold1359 GLEAN mRNA 138137 138168 0.889848 - . ID=CGI_10013236; scaffold1359 TRF Tandem_Repeat 138137 138168 64 + . . scaffold1359 GLEAN mRNA 144145 144203 0.889848 - . ID=CGI_10013236; scaffold1359 TRF Tandem_Repeat 144145 144203 52 + . . scaffold1359 GLEAN mRNA 144116 144703 0.889848 - . ID=CGI_10013236; scaffold1359 TRF Tandem_Repeat 144116 144703 741 + . . scaffold1359 GLEAN mRNA 145941 146133 0.889848 - . ID=CGI_10013236; scaffold1359 TRF Tandem_Repeat 145941 146133 293 + . . scaffold1359 GLEAN mRNA 146147 146201 0.889848 - . ID=CGI_10013236; scaffold1359 TRF Tandem_Repeat 146147 146201 53 + . . scaffold1359 GLEAN mRNA 143042 143266 0.889848 - . ID=CGI_10013236; scaffold1359 WUBlastX LINE_RTE-X 143042 143266 66 + . . scaffold1359 GLEAN mRNA 176474 176517 0.999998 - . ID=CGI_10013237; scaffold1359 TRF Tandem_Repeat 176474 176517 88 + . . scaffold1359 GLEAN mRNA 231420 231436 1 - . ID=CGI_10013244; scaffold1359 WUBlastX DNA_IS4EU 231420 232034 27 + . . scaffold1359 GLEAN mRNA 231114 231436 1 - . ID=CGI_10013244; scaffold1359 WUBlastX DNA_IS4EU 231114 231992 27 + . . scaffold1359 GLEAN mRNA 283225 283353 1 - . ID=CGI_10013248; scaffold1359 TRF Tandem_Repeat 283225 283353 240 + . . scaffold1359 GLEAN mRNA 311682 311986 0.372616 - . ID=CGI_10013249; scaffold1359 TRF Tandem_Repeat 311682 311986 496 + . . scaffold1359 GLEAN mRNA 312664 313103 0.372616 - . ID=CGI_10013249; scaffold1359 TRF Tandem_Repeat 312664 313103 619 + . . scaffold1359 GLEAN mRNA 313310 313423 0.372616 - . ID=CGI_10013249; scaffold1359 TRF Tandem_Repeat 313310 313423 93 + . . scaffold1359 GLEAN mRNA 315934 316227 0.372616 - . ID=CGI_10013249; scaffold1359 TRF Tandem_Repeat 315934 316227 518 + . . scaffold1359 GLEAN mRNA 316852 316908 0.372616 - . ID=CGI_10013249; scaffold1359 TRF Tandem_Repeat 316852 316908 87 + . . scaffold1359 GLEAN mRNA 317605 317792 0.372616 - . ID=CGI_10013249; scaffold1359 TRF Tandem_Repeat 317605 317792 193 + . . scaffold1359 GLEAN mRNA 334458 334513 0.372616 - . ID=CGI_10013249; scaffold1359 TRF Tandem_Repeat 334458 334513 98 + . . scaffold1359 GLEAN mRNA 345148 345290 0.999661 - . ID=CGI_10013250; scaffold1359 TRF Tandem_Repeat 345148 345290 171 + . . scaffold1359 GLEAN mRNA 345095 345354 0.999661 - . ID=CGI_10013250; scaffold1359 TRF Tandem_Repeat 345095 345354 61 + . . scaffold1359 GLEAN mRNA 345407 345519 0.999661 - . ID=CGI_10013250; scaffold1359 TRF Tandem_Repeat 345407 345519 109 + . . scaffold1359 GLEAN mRNA 345506 345630 0.999661 - . ID=CGI_10013250; scaffold1359 TRF Tandem_Repeat 345506 345630 110 + . . scaffold1359 GLEAN mRNA 345534 345630 0.999661 - . ID=CGI_10013250; scaffold1359 TRF Tandem_Repeat 345534 345630 115 + . . scaffold1484 GLEAN mRNA 30070 30242 0.893015 - . ID=CGI_10013253; scaffold1484 TRF Tandem_Repeat 30070 30242 64 + . . scaffold1484 GLEAN mRNA 30021 30150 0.893015 - . ID=CGI_10013253; scaffold1484 TRF Tandem_Repeat 30021 30150 84 + . . scaffold1484 GLEAN mRNA 31192 31243 0.893015 - . ID=CGI_10013253; scaffold1484 TRF Tandem_Repeat 31192 31243 104 + . . scaffold1484 GLEAN mRNA 69688 69738 0.593095 + . ID=CGI_10013256; scaffold1484 TRF Tandem_Repeat 69688 69738 102 + . . scaffold1484 GLEAN mRNA 109307 109398 0.818682 - . ID=CGI_10013260; scaffold1484 TRF Tandem_Repeat 109307 109398 71 + . . scaffold1484 GLEAN mRNA 112094 112228 0.818682 - . ID=CGI_10013260; scaffold1484 TRF Tandem_Repeat 112094 112228 89 + . . scaffold1484 GLEAN mRNA 106762 107124 0.818682 - . ID=CGI_10013260; scaffold1484 WUBlastX LTR_DIRS 106762 107124 29 - . . scaffold1484 GLEAN mRNA 108110 108457 0.818682 - . ID=CGI_10013260; scaffold1484 WUBlastX LTR_Ngaro 108110 108457 202 - . . scaffold1484 GLEAN mRNA 108450 108716 0.818682 - . ID=CGI_10013260; scaffold1484 WUBlastX LTR_Ngaro 108450 108716 170 - . . scaffold1484 GLEAN mRNA 106684 107058 0.818682 - . ID=CGI_10013260; scaffold1484 WUBlastX LTR_Ngaro 106684 107058 161 - . . scaffold1484 GLEAN mRNA 107779 108111 0.818682 - . ID=CGI_10013260; scaffold1484 WUBlastX LTR_Ngaro 107779 108111 140 - . . scaffold1484 GLEAN mRNA 108710 108934 0.818682 - . ID=CGI_10013260; scaffold1484 WUBlastX LTR_Ngaro 108710 108934 53 - . . scaffold1484 GLEAN mRNA 108110 108886 0.818682 - . ID=CGI_10013260; scaffold1484 WUBlastX LTR_Ngaro 108110 108886 119 - . . scaffold1484 GLEAN mRNA 179562 179623 0.987285 + . ID=CGI_10013262; scaffold1484 TRF Tandem_Repeat 179562 179623 99 + . . scaffold1484 GLEAN mRNA 180379 180485 0.987285 + . ID=CGI_10013262; scaffold1484 TRF Tandem_Repeat 180379 180485 133 + . . scaffold1484 GLEAN mRNA 183302 183434 0.987285 + . ID=CGI_10013262; scaffold1484 TRF Tandem_Repeat 183302 183434 180 + . . scaffold1484 GLEAN mRNA 185079 185762 0.987285 + . ID=CGI_10013262; scaffold1484 TRF Tandem_Repeat 185079 185762 794 + . . scaffold1484 GLEAN mRNA 185929 185982 0.987285 + . ID=CGI_10013262; scaffold1484 TRF Tandem_Repeat 185929 185982 58 + . . scaffold1484 GLEAN mRNA 189732 189846 0.987285 + . ID=CGI_10013262; scaffold1484 TRF Tandem_Repeat 189732 189846 196 + . . scaffold1484 GLEAN mRNA 202758 202805 0.987285 + . ID=CGI_10013262; scaffold1484 TRF Tandem_Repeat 202758 202805 52 + . . scaffold1484 GLEAN mRNA 202974 204138 0.987285 + . ID=CGI_10013262; scaffold1484 TRF Tandem_Repeat 202974 204138 1480 + . . scaffold1484 GLEAN mRNA 208691 208821 0.987285 + . ID=CGI_10013262; scaffold1484 TRF Tandem_Repeat 208691 208821 208 + . . scaffold1484 GLEAN mRNA 319441 319507 1 - . ID=CGI_10013270; scaffold1484 TRF Tandem_Repeat 319441 319507 125 + . . scaffold1484 GLEAN mRNA 324086 324122 0.831954 + . ID=CGI_10013271; scaffold1484 TRF Tandem_Repeat 324086 324122 74 + . . scaffold1484 GLEAN mRNA 347124 347161 0.84036 - . ID=CGI_10013272; scaffold1484 TRF Tandem_Repeat 347124 347161 76 + . . scaffold49 GLEAN mRNA 90425 90487 0.333225 + . ID=CGI_10013273; scaffold49 TRF Tandem_Repeat 90425 90487 126 + . . scaffold49 GLEAN mRNA 142903 142951 1 + . ID=CGI_10013281; scaffold49 TRF Tandem_Repeat 142903 142951 98 + . . scaffold49 GLEAN mRNA 144636 144695 1 + . ID=CGI_10013281; scaffold49 TRF Tandem_Repeat 144636 144695 102 + . . scaffold49 GLEAN mRNA 259734 259759 0.992812 - . ID=CGI_10013285; scaffold49 TRF Tandem_Repeat 259734 259759 52 + . . scaffold49 GLEAN mRNA 254181 255044 0.992812 - . ID=CGI_10013285; scaffold49 WUBlastX DNA_IS 254181 255044 1443 + . . scaffold49 GLEAN mRNA 246655 246912 0.992812 - . ID=CGI_10013285; scaffold49 WUBlastX LINE_L1-Tx1 246655 246912 21 - . . scaffold49 GLEAN mRNA 262478 262512 0.992812 - . ID=CGI_10013285; scaffold49 TRF Tandem_Repeat 262478 262512 52 + . . scaffold49 GLEAN mRNA 272805 272872 0.644326 - . ID=CGI_10013286; scaffold49 TRF Tandem_Repeat 272805 272872 57 + . . scaffold49 GLEAN mRNA 286931 286978 0.644326 - . ID=CGI_10013286; scaffold49 TRF Tandem_Repeat 286931 286978 87 + . . scaffold49 GLEAN mRNA 289295 289344 0.644326 - . ID=CGI_10013286; scaffold49 TRF Tandem_Repeat 289295 289344 100 + . . scaffold49 GLEAN mRNA 294018 294161 0.644326 - . ID=CGI_10013286; scaffold49 WUBlastX LINE_RTE-BovB 294018 294161 50 + . . scaffold49 GLEAN mRNA 289295 289344 0.999661 + . ID=CGI_10013288; scaffold49 TRF Tandem_Repeat 289295 289344 100 + . . scaffold49 GLEAN mRNA 345510 346197 0.967821 + . ID=CGI_10013290; scaffold49 TRF Tandem_Repeat 345510 346197 794 + . . scaffold49 GLEAN mRNA 346713 346779 0.967821 + . ID=CGI_10013290; scaffold49 TRF Tandem_Repeat 346713 346779 89 + . . scaffold49 GLEAN mRNA 347279 347324 0.967821 + . ID=CGI_10013290; scaffold49 TRF Tandem_Repeat 347279 347324 92 + . . scaffold49 GLEAN mRNA 347348 347380 0.967821 + . ID=CGI_10013290; scaffold49 TRF Tandem_Repeat 347348 347380 66 + . . scaffold49 GLEAN mRNA 347568 347629 0.967821 + . ID=CGI_10013290; scaffold49 TRF Tandem_Repeat 347568 347629 124 + . . scaffold49 GLEAN mRNA 349930 350003 0.967821 + . ID=CGI_10013290; scaffold49 TRF Tandem_Repeat 349930 350003 85 + . . scaffold49 GLEAN mRNA 349930 350003 0.967821 + . ID=CGI_10013290; scaffold49 TRF Tandem_Repeat 349930 350003 94 + . . scaffold49 GLEAN mRNA 350115 350228 0.967821 + . ID=CGI_10013290; scaffold49 TRF Tandem_Repeat 350115 350228 201 + . . scaffold1888 GLEAN mRNA 52334 52369 0.998764 + . ID=CGI_10013292; scaffold1888 TRF Tandem_Repeat 52334 52369 63 + . . scaffold1888 GLEAN mRNA 51190 51564 0.998764 + . ID=CGI_10013292; scaffold1888 WUBlastX DNA_TcMar-Pogo 51190 51564 60 + . . scaffold1888 GLEAN mRNA 51546 51641 0.998764 + . ID=CGI_10013292; scaffold1888 WUBlastX DNA_TcMar-Pogo 51546 51641 34 + . . scaffold1888 GLEAN mRNA 51748 52623 0.998764 + . ID=CGI_10013292; scaffold1888 WUBlastX DNA_TcMar-Pogo 51748 52623 340 + . . scaffold1888 GLEAN mRNA 51199 51414 0.998764 + . ID=CGI_10013292; scaffold1888 WUBlastX DNA_TcMar-Pogo 51199 51414 90 + . . scaffold1888 GLEAN mRNA 51546 51608 0.998764 + . ID=CGI_10013292; scaffold1888 WUBlastX DNA_TcMar-Tigge 51546 51608 43 + . . scaffold1888 GLEAN mRNA 68198 68230 0.994729 - . ID=CGI_10013295; scaffold1888 TRF Tandem_Repeat 68198 68230 66 + . . scaffold1888 GLEAN mRNA 77295 78065 0.994729 - . ID=CGI_10013295; scaffold1888 WUBlastX LINE_RTE-X 77295 78065 175 + . . scaffold1888 GLEAN mRNA 76443 77924 0.994729 - . ID=CGI_10013295; scaffold1888 WUBlastX LINE_RTE-X 76443 77924 570 + . . scaffold1888 GLEAN mRNA 97157 97193 0.99883 - . ID=CGI_10013296; scaffold1888 TRF Tandem_Repeat 97157 97193 56 + . . scaffold1888 GLEAN mRNA 98475 98506 0.99883 - . ID=CGI_10013296; scaffold1888 TRF Tandem_Repeat 98475 98506 55 + . . scaffold1888 GLEAN mRNA 101992 102034 0.99883 - . ID=CGI_10013296; scaffold1888 TRF Tandem_Repeat 101992 102034 86 + . . scaffold1888 GLEAN mRNA 118399 118436 0.858074 + . ID=CGI_10013297; scaffold1888 TRF Tandem_Repeat 118399 118436 67 + . . scaffold1888 GLEAN mRNA 125448 125521 0.858074 + . ID=CGI_10013297; scaffold1888 TRF Tandem_Repeat 125448 125521 148 + . . scaffold1888 GLEAN mRNA 137231 137259 0.858074 + . ID=CGI_10013297; scaffold1888 TRF Tandem_Repeat 137231 137259 58 + . . scaffold1888 GLEAN mRNA 141280 141326 0.858074 + . ID=CGI_10013297; scaffold1888 TRF Tandem_Repeat 141280 141326 94 + . . scaffold1888 GLEAN mRNA 143959 144008 0.858074 + . ID=CGI_10013297; scaffold1888 TRF Tandem_Repeat 143959 144008 100 + . . scaffold1888 GLEAN mRNA 146659 146690 0.858074 + . ID=CGI_10013297; scaffold1888 TRF Tandem_Repeat 146659 146690 64 + . . scaffold1888 GLEAN mRNA 147517 147957 0.858074 + . ID=CGI_10013297; scaffold1888 WUBlastX LINE_L2 147517 147957 52 + . . scaffold1888 GLEAN mRNA 147313 147651 0.858074 + . ID=CGI_10013297; scaffold1888 WUBlastX DNA_hAT-hATw 147313 147651 27 + . . scaffold1888 GLEAN mRNA 137231 137259 0.988459 - . ID=CGI_10013299; scaffold1888 TRF Tandem_Repeat 137231 137259 58 + . . scaffold1888 GLEAN mRNA 143959 144008 1 - . ID=CGI_10013301; scaffold1888 TRF Tandem_Repeat 143959 144008 100 + . . scaffold1888 GLEAN mRNA 192812 192852 0.958436 - . ID=CGI_10013303; scaffold1888 TRF Tandem_Repeat 192812 192852 82 + . . scaffold1888 GLEAN mRNA 197725 198459 0.958436 - . ID=CGI_10013303; scaffold1888 TRF Tandem_Repeat 197725 198459 700 + . . scaffold1888 GLEAN mRNA 198632 198674 0.958436 - . ID=CGI_10013303; scaffold1888 TRF Tandem_Repeat 198632 198674 56 + . . scaffold1888 GLEAN mRNA 270291 270884 0.80359 - . ID=CGI_10013306; scaffold1888 TRF Tandem_Repeat 270291 270884 817 + . . scaffold1888 GLEAN mRNA 270355 270884 0.80359 - . ID=CGI_10013306; scaffold1888 TRF Tandem_Repeat 270355 270884 806 + . . scaffold1888 GLEAN mRNA 288585 289174 0.43323 + . ID=CGI_10013307; scaffold1888 TRF Tandem_Repeat 288585 289174 665 + . . scaffold1888 GLEAN mRNA 325332 325788 0.999437 - . ID=CGI_10013310; scaffold1888 TRF Tandem_Repeat 325332 325788 662 + . . scaffold975 GLEAN mRNA 29903 29958 0.839317 + . ID=CGI_10013313; scaffold975 TRF Tandem_Repeat 29903 29958 103 + . . scaffold975 GLEAN mRNA 34610 34665 0.839317 + . ID=CGI_10013313; scaffold975 TRF Tandem_Repeat 34610 34665 103 + . . scaffold975 GLEAN mRNA 41290 42291 0.999743 - . ID=CGI_10013314; scaffold975 WUBlastX DNA_TcMar-Tc1 41290 42291 417 - . . scaffold975 GLEAN mRNA 129941 130039 1 - . ID=CGI_10013325; scaffold975 WUBlastX LINE_RTE-BovB 129941 130039 37 + . . scaffold975 GLEAN mRNA 129876 129941 1 - . ID=CGI_10013325; scaffold975 WUBlastX LINE_RTE-BovB 129876 129941 26 + . . scaffold975 GLEAN mRNA 130719 130889 1 - . ID=CGI_10013325; scaffold975 WUBlastX LINE_RTE-BovB 130719 130889 32 + . . scaffold975 GLEAN mRNA 130246 130725 1 - . ID=CGI_10013325; scaffold975 WUBlastX LINE_RTE-BovB 130246 130725 165 + . . scaffold975 GLEAN mRNA 130099 130743 1 - . ID=CGI_10013325; scaffold975 WUBlastX LINE_RTE-BovB 130099 130743 90 + . . scaffold975 GLEAN mRNA 131259 131290 1 - . ID=CGI_10013325; scaffold975 TRF Tandem_Repeat 131259 131290 55 + . . scaffold975 GLEAN mRNA 137467 137532 0.999991 - . ID=CGI_10013326; scaffold975 TRF Tandem_Repeat 137467 137532 132 + . . scaffold975 GLEAN mRNA 142020 142074 0.999991 - . ID=CGI_10013326; scaffold975 TRF Tandem_Repeat 142020 142074 101 + . . scaffold975 GLEAN mRNA 142153 142200 0.999991 - . ID=CGI_10013326; scaffold975 TRF Tandem_Repeat 142153 142200 96 + . . scaffold975 GLEAN mRNA 156015 156061 1 + . ID=CGI_10013327; scaffold975 TRF Tandem_Repeat 156015 156061 94 + . . scaffold975 GLEAN mRNA 184422 184475 0.405911 + . ID=CGI_10013328; scaffold975 TRF Tandem_Repeat 184422 184475 108 + . . scaffold975 GLEAN mRNA 195965 196072 0.405911 + . ID=CGI_10013328; scaffold975 TRF Tandem_Repeat 195965 196072 64 + . . scaffold975 GLEAN mRNA 243766 243948 0.499805 - . ID=CGI_10013329; scaffold975 WUBlastX LINE_L1-Tx1 243766 243948 42 - . . scaffold975 GLEAN mRNA 244709 244951 0.499805 - . ID=CGI_10013329; scaffold975 WUBlastX LINE_L1-Tx1 244709 244951 72 - . . scaffold975 GLEAN mRNA 244664 245032 0.499805 - . ID=CGI_10013329; scaffold975 WUBlastX LINE_L1 244664 245032 62 - . . scaffold975 GLEAN mRNA 329938 329987 1 - . ID=CGI_10013331; scaffold975 TRF Tandem_Repeat 329938 329987 73 + . . scaffold1894 GLEAN mRNA 22034 22076 0.499328 - . ID=CGI_10013334; scaffold1894 TRF Tandem_Repeat 22034 22076 86 + . . scaffold1894 GLEAN mRNA 23765 23810 0.499328 - . ID=CGI_10013334; scaffold1894 TRF Tandem_Repeat 23765 23810 74 + . . scaffold1894 GLEAN mRNA 25759 25794 0.499328 - . ID=CGI_10013334; scaffold1894 TRF Tandem_Repeat 25759 25794 54 + . . scaffold1894 GLEAN mRNA 28230 28264 0.499328 - . ID=CGI_10013334; scaffold1894 TRF Tandem_Repeat 28230 28264 56 + . . scaffold1894 GLEAN mRNA 40585 40625 0.499328 - . ID=CGI_10013334; scaffold1894 TRF Tandem_Repeat 40585 40625 82 + . . scaffold1894 GLEAN mRNA 48646 48685 0.499328 - . ID=CGI_10013334; scaffold1894 TRF Tandem_Repeat 48646 48685 80 + . . scaffold1894 GLEAN mRNA 42057 42506 0.499328 - . ID=CGI_10013334; scaffold1894 WUBlastX LINE_L1-Tx1 42057 42506 124 - . . scaffold1894 GLEAN mRNA 41994 42530 0.499328 - . ID=CGI_10013334; scaffold1894 WUBlastX LINE_L1-Tx1 41994 42530 51 - . . scaffold1894 GLEAN mRNA 40775 41068 0.499328 - . ID=CGI_10013334; scaffold1894 WUBlastX LINE_L1-Tx1 40775 41068 47 - . . scaffold1894 GLEAN mRNA 40865 41185 0.499328 - . ID=CGI_10013334; scaffold1894 WUBlastX LINE_L1 40865 41185 44 - . . scaffold1894 GLEAN mRNA 41620 41796 0.499328 - . ID=CGI_10013334; scaffold1894 WUBlastX LINE_L1 41620 41796 45 - . . scaffold1894 GLEAN mRNA 41668 41901 0.499328 - . ID=CGI_10013334; scaffold1894 WUBlastX LINE_L1-Tx1 41668 41901 44 - . . scaffold1894 GLEAN mRNA 40778 40993 0.499328 - . ID=CGI_10013334; scaffold1894 WUBlastX LINE_L1-Tx1 40778 40993 54 - . . scaffold1894 GLEAN mRNA 108586 108626 0.842452 + . ID=CGI_10013336; scaffold1894 TRF Tandem_Repeat 108586 108626 82 + . . scaffold1894 GLEAN mRNA 121240 121280 0.842452 + . ID=CGI_10013336; scaffold1894 TRF Tandem_Repeat 121240 121280 82 + . . scaffold1894 GLEAN mRNA 240254 240288 0.725039 + . ID=CGI_10013340; scaffold1894 TRF Tandem_Repeat 240254 240288 70 + . . scaffold1894 GLEAN mRNA 252228 252394 0.725039 + . ID=CGI_10013340; scaffold1894 TRF Tandem_Repeat 252228 252394 141 + . . scaffold1894 GLEAN mRNA 252429 252565 0.725039 + . ID=CGI_10013340; scaffold1894 TRF Tandem_Repeat 252429 252565 152 + . . scaffold1894 GLEAN mRNA 313904 313937 0.788071 + . ID=CGI_10013342; scaffold1894 TRF Tandem_Repeat 313904 313937 68 + . . scaffold1894 GLEAN mRNA 314559 314609 0.788071 + . ID=CGI_10013342; scaffold1894 TRF Tandem_Repeat 314559 314609 102 + . . scaffold1894 GLEAN mRNA 318836 319531 0.788071 + . ID=CGI_10013342; scaffold1894 WUBlastX LINE_L1-Tx1 318836 319531 37 - . . scaffold1894 GLEAN mRNA 318567 318827 0.788071 + . ID=CGI_10013342; scaffold1894 WUBlastX LINE_L1-Tx1 318567 318827 25 - . . scaffold1894 GLEAN mRNA 318833 319354 0.788071 + . ID=CGI_10013342; scaffold1894 WUBlastX LINE_L1-Tx1 318833 319354 128 - . . scaffold1894 GLEAN mRNA 335437 335514 0.788071 + . ID=CGI_10013342; scaffold1894 TRF Tandem_Repeat 335437 335514 84 + . . scaffold1894 GLEAN mRNA 335437 335514 0.899279 - . ID=CGI_10013343; scaffold1894 TRF Tandem_Repeat 335437 335514 84 + . . scaffold266 GLEAN mRNA 8800 9339 0.992345 - . ID=CGI_10013345; scaffold266 WUBlastX DNA_hAT 8800 9339 62 - . . scaffold266 GLEAN mRNA 54621 54842 0.998446 - . ID=CGI_10013346; scaffold266 WUBlastX DNA_hAT-Tip100 54621 54842 132 + . . scaffold266 GLEAN mRNA 54669 54896 0.998446 - . ID=CGI_10013346; scaffold266 WUBlastX DNA_hAT-Tip100 54669 54896 51 + . . scaffold266 GLEAN mRNA 100696 101668 0.518698 + . ID=CGI_10013348; scaffold266 TRF Tandem_Repeat 100696 101668 770 + . . scaffold266 GLEAN mRNA 100702 101733 0.518698 + . ID=CGI_10013348; scaffold266 TRF Tandem_Repeat 100702 101733 1049 + . . scaffold266 GLEAN mRNA 100702 101733 0.518698 + . ID=CGI_10013348; scaffold266 TRF Tandem_Repeat 100702 101733 899 + . . scaffold266 GLEAN mRNA 111396 113416 0.993907 - . ID=CGI_10013349; scaffold266 TRF Tandem_Repeat 111396 113416 3205 + . . scaffold266 GLEAN mRNA 115085 115387 0.993907 - . ID=CGI_10013349; scaffold266 TRF Tandem_Repeat 115085 115387 219 + . . scaffold266 GLEAN mRNA 115055 115386 0.993907 - . ID=CGI_10013349; scaffold266 TRF Tandem_Repeat 115055 115386 258 + . . scaffold266 GLEAN mRNA 138635 138972 0.780625 + . ID=CGI_10013350; scaffold266 TRF Tandem_Repeat 138635 138972 642 + . . scaffold266 GLEAN mRNA 139387 139505 0.780625 + . ID=CGI_10013350; scaffold266 TRF Tandem_Repeat 139387 139505 91 + . . scaffold266 GLEAN mRNA 139548 139670 0.780625 + . ID=CGI_10013350; scaffold266 TRF Tandem_Repeat 139548 139670 124 + . . scaffold266 GLEAN mRNA 140740 140903 0.780625 + . ID=CGI_10013350; scaffold266 TRF Tandem_Repeat 140740 140903 265 + . . scaffold266 GLEAN mRNA 144194 144669 0.780625 + . ID=CGI_10013350; scaffold266 TRF Tandem_Repeat 144194 144669 404 + . . scaffold266 GLEAN mRNA 146278 146317 0.780625 + . ID=CGI_10013350; scaffold266 TRF Tandem_Repeat 146278 146317 62 + . . scaffold266 GLEAN mRNA 146804 146855 0.780625 + . ID=CGI_10013350; scaffold266 TRF Tandem_Repeat 146804 146855 50 + . . scaffold266 GLEAN mRNA 237494 237533 0.649405 - . ID=CGI_10013355; scaffold266 TRF Tandem_Repeat 237494 237533 80 + . . scaffold266 GLEAN mRNA 240616 240650 0.649405 - . ID=CGI_10013355; scaffold266 TRF Tandem_Repeat 240616 240650 70 + . . scaffold266 GLEAN mRNA 245952 246284 0.649405 - . ID=CGI_10013355; scaffold266 WUBlastX LINE_RTE-X 245952 246284 96 - . . scaffold266 GLEAN mRNA 245955 246347 0.649405 - . ID=CGI_10013355; scaffold266 WUBlastX LINE_RTE-X 245955 246347 84 - . . scaffold266 GLEAN mRNA 246066 246425 0.649405 - . ID=CGI_10013355; scaffold266 WUBlastX LINE_RTE-X 246066 246425 37 - . . scaffold1804 GLEAN mRNA 3465 3505 1 + . ID=CGI_10013357; scaffold1804 TRF Tandem_Repeat 3465 3505 82 + . . scaffold1804 GLEAN mRNA 11140 11402 0.609746 - . ID=CGI_10013358; scaffold1804 TRF Tandem_Repeat 11140 11402 463 + . . scaffold1804 GLEAN mRNA 12217 12865 0.609746 - . ID=CGI_10013358; scaffold1804 TRF Tandem_Repeat 12217 12865 953 + . . scaffold1804 GLEAN mRNA 16608 16643 0.609746 - . ID=CGI_10013358; scaffold1804 TRF Tandem_Repeat 16608 16643 63 + . . scaffold1804 GLEAN mRNA 20017 20859 0.609746 - . ID=CGI_10013358; scaffold1804 TRF Tandem_Repeat 20017 20859 972 + . . scaffold1804 GLEAN mRNA 16366 16493 0.609746 - . ID=CGI_10013358; scaffold1804 TRF Tandem_Repeat 16366 16493 238 + . . scaffold1804 GLEAN mRNA 20017 20859 0.707102 + . ID=CGI_10013359; scaffold1804 TRF Tandem_Repeat 20017 20859 972 + . . scaffold1804 GLEAN mRNA 71184 71966 1 - . ID=CGI_10013364; scaffold1804 TRF Tandem_Repeat 71184 71966 817 + . . scaffold1804 GLEAN mRNA 72137 72168 1 - . ID=CGI_10013364; scaffold1804 TRF Tandem_Repeat 72137 72168 55 + . . scaffold1804 GLEAN mRNA 105469 105512 1 - . ID=CGI_10013367; scaffold1804 TRF Tandem_Repeat 105469 105512 88 + . . scaffold1804 GLEAN mRNA 114806 115012 0.950499 - . ID=CGI_10013368; scaffold1804 TRF Tandem_Repeat 114806 115012 118 + . . scaffold1804 GLEAN mRNA 114838 115012 0.950499 - . ID=CGI_10013368; scaffold1804 TRF Tandem_Repeat 114838 115012 93 + . . scaffold1804 GLEAN mRNA 118835 118901 0.593391 + . ID=CGI_10013369; scaffold1804 TRF Tandem_Repeat 118835 118901 98 + . . scaffold1804 GLEAN mRNA 118835 118905 0.593391 + . ID=CGI_10013369; scaffold1804 TRF Tandem_Repeat 118835 118905 79 + . . scaffold1804 GLEAN mRNA 133757 136642 0.801136 + . ID=CGI_10013370; scaffold1804 TRF Tandem_Repeat 133757 136642 5772 + . . scaffold1804 GLEAN mRNA 138019 138509 0.801136 + . ID=CGI_10013370; scaffold1804 TRF Tandem_Repeat 138019 138509 657 + . . scaffold1804 GLEAN mRNA 140858 141136 0.801136 + . ID=CGI_10013370; scaffold1804 TRF Tandem_Repeat 140858 141136 425 + . . scaffold1804 GLEAN mRNA 141170 141385 0.801136 + . ID=CGI_10013370; scaffold1804 TRF Tandem_Repeat 141170 141385 202 + . . scaffold1804 GLEAN mRNA 150620 150930 0.801136 + . ID=CGI_10013370; scaffold1804 TRF Tandem_Repeat 150620 150930 536 + . . scaffold1804 GLEAN mRNA 151143 151643 0.801136 + . ID=CGI_10013370; scaffold1804 TRF Tandem_Repeat 151143 151643 822 + . . scaffold1804 GLEAN mRNA 169453 169593 1 + . ID=CGI_10013372; scaffold1804 WUBlastX DNA_NOF 169453 169593 32 + . . scaffold1804 GLEAN mRNA 173660 174030 0.693734 - . ID=CGI_10013373; scaffold1804 TRF Tandem_Repeat 173660 174030 473 + . . scaffold1804 GLEAN mRNA 174062 174669 0.693734 - . ID=CGI_10013373; scaffold1804 TRF Tandem_Repeat 174062 174669 370 + . . scaffold1804 GLEAN mRNA 174130 174700 0.693734 - . ID=CGI_10013373; scaffold1804 TRF Tandem_Repeat 174130 174700 963 + . . scaffold1804 GLEAN mRNA 175675 175710 0.693734 - . ID=CGI_10013373; scaffold1804 TRF Tandem_Repeat 175675 175710 72 + . . scaffold1804 GLEAN mRNA 181799 182112 0.693734 - . ID=CGI_10013373; scaffold1804 TRF Tandem_Repeat 181799 182112 291 + . . scaffold1804 GLEAN mRNA 183118 183199 0.693734 - . ID=CGI_10013373; scaffold1804 TRF Tandem_Repeat 183118 183199 157 + . . scaffold1804 GLEAN mRNA 190238 190295 0.693734 - . ID=CGI_10013373; scaffold1804 TRF Tandem_Repeat 190238 190295 73 + . . scaffold1804 GLEAN mRNA 190238 190289 0.693734 - . ID=CGI_10013373; scaffold1804 TRF Tandem_Repeat 190238 190289 86 + . . scaffold1804 GLEAN mRNA 197759 197811 0.648316 + . ID=CGI_10013374; scaffold1804 TRF Tandem_Repeat 197759 197811 106 + . . scaffold1804 GLEAN mRNA 197973 198013 0.648316 + . ID=CGI_10013374; scaffold1804 TRF Tandem_Repeat 197973 198013 82 + . . scaffold1804 GLEAN mRNA 201529 201591 0.648316 + . ID=CGI_10013374; scaffold1804 TRF Tandem_Repeat 201529 201591 126 + . . scaffold1804 GLEAN mRNA 206633 206739 0.648316 + . ID=CGI_10013374; scaffold1804 TRF Tandem_Repeat 206633 206739 214 + . . scaffold1804 GLEAN mRNA 208973 209014 0.648316 + . ID=CGI_10013374; scaffold1804 TRF Tandem_Repeat 208973 209014 66 + . . scaffold1804 GLEAN mRNA 208961 209007 0.648316 + . ID=CGI_10013374; scaffold1804 TRF Tandem_Repeat 208961 209007 58 + . . scaffold1804 GLEAN mRNA 259163 259396 1 - . ID=CGI_10013376; scaffold1804 WUBlastX DNA_PiggyBac 259163 259396 38 - . . scaffold1804 GLEAN mRNA 283542 284006 0.354697 + . ID=CGI_10013383; scaffold1804 WUBlastX DNA_hAT-Blackja 283542 284006 82 + . . scaffold1804 GLEAN mRNA 285923 286309 0.354697 + . ID=CGI_10013383; scaffold1804 WUBlastX DNA_hAT-Blackja 285923 286309 93 + . . scaffold1804 GLEAN mRNA 298147 298192 1 + . ID=CGI_10013384; scaffold1804 TRF Tandem_Repeat 298147 298192 51 + . . scaffold1804 GLEAN mRNA 299776 299833 1 + . ID=CGI_10013384; scaffold1804 TRF Tandem_Repeat 299776 299833 82 + . . scaffold1804 GLEAN mRNA 322505 322829 0.999929 - . ID=CGI_10013386; scaffold1804 TRF Tandem_Repeat 322505 322829 278 + . . scaffold1804 GLEAN mRNA 322690 322809 0.999929 - . ID=CGI_10013386; scaffold1804 TRF Tandem_Repeat 322690 322809 83 + . . scaffold1804 GLEAN mRNA 322702 322822 0.999929 - . ID=CGI_10013386; scaffold1804 TRF Tandem_Repeat 322702 322822 70 + . . scaffold1804 GLEAN mRNA 323071 323611 0.999929 - . ID=CGI_10013386; scaffold1804 TRF Tandem_Repeat 323071 323611 622 + . . scaffold1804 GLEAN mRNA 323432 323539 0.999929 - . ID=CGI_10013386; scaffold1804 TRF Tandem_Repeat 323432 323539 74 + . . scaffold1804 GLEAN mRNA 323629 324094 0.999929 - . ID=CGI_10013386; scaffold1804 TRF Tandem_Repeat 323629 324094 524 + . . scaffold1804 GLEAN mRNA 325093 325140 0.999929 - . ID=CGI_10013386; scaffold1804 TRF Tandem_Repeat 325093 325140 69 + . . scaffold1804 GLEAN mRNA 347437 347469 0.999939 - . ID=CGI_10013389; scaffold1804 TRF Tandem_Repeat 347437 347469 57 + . . scaffold1804 GLEAN mRNA 347477 347515 0.999939 - . ID=CGI_10013389; scaffold1804 TRF Tandem_Repeat 347477 347515 78 + . . scaffold1717 GLEAN mRNA 33436 33519 0.558386 + . ID=CGI_10013390; scaffold1717 TRF Tandem_Repeat 33436 33519 168 + . . scaffold1717 GLEAN mRNA 44375 46484 0.558386 + . ID=CGI_10013390; scaffold1717 TRF Tandem_Repeat 44375 46484 1832 + . . scaffold1717 GLEAN mRNA 44393 45700 0.558386 + . ID=CGI_10013390; scaffold1717 TRF Tandem_Repeat 44393 45700 324 + . . scaffold1717 GLEAN mRNA 44375 46484 0.558386 + . ID=CGI_10013390; scaffold1717 TRF Tandem_Repeat 44375 46484 2023 + . . scaffold1717 GLEAN mRNA 41925 43031 0.558386 + . ID=CGI_10013390; scaffold1717 WUBlastX LINE_CR1-L2 41925 43031 254 - . . scaffold1717 GLEAN mRNA 41582 41917 0.558386 + . ID=CGI_10013390; scaffold1717 WUBlastX LINE_L2 41582 41917 26 - . . scaffold1717 GLEAN mRNA 41925 43280 0.558386 + . ID=CGI_10013390; scaffold1717 WUBlastX LINE_CR1 41925 43280 75 - . . scaffold1717 GLEAN mRNA 59207 59251 0.980383 + . ID=CGI_10013391; scaffold1717 TRF Tandem_Repeat 59207 59251 90 + . . scaffold1717 GLEAN mRNA 64609 65064 0.980383 + . ID=CGI_10013391; scaffold1717 WUBlastX LINE_CR1-L2 64609 65064 55 + . . scaffold1717 GLEAN mRNA 64699 65376 0.980383 + . ID=CGI_10013391; scaffold1717 WUBlastX LINE_L2 64699 65376 74 + . . scaffold1717 GLEAN mRNA 96293 96988 1 - . ID=CGI_10013393; scaffold1717 WUBlastX DNA_hAT 96293 96988 123 - . . scaffold1717 GLEAN mRNA 100646 100757 1 - . ID=CGI_10013393; scaffold1717 TRF Tandem_Repeat 100646 100757 73 + . . scaffold1717 GLEAN mRNA 102933 102962 1 - . ID=CGI_10013393; scaffold1717 TRF Tandem_Repeat 102933 102962 60 + . . scaffold1717 GLEAN mRNA 105680 105790 1 - . ID=CGI_10013393; scaffold1717 TRF Tandem_Repeat 105680 105790 75 + . . scaffold1717 GLEAN mRNA 106059 106310 1 - . ID=CGI_10013393; scaffold1717 WUBlastX DNA_hAT 106059 106310 106 - . . scaffold1717 GLEAN mRNA 107160 107438 1 - . ID=CGI_10013393; scaffold1717 WUBlastX DNA_hAT 107160 107651 122 - . . scaffold1717 GLEAN mRNA 103115 103294 1 - . ID=CGI_10013393; scaffold1717 WUBlastX DNA_hAT 103115 103294 87 - . . scaffold1717 GLEAN mRNA 111463 111497 0.999902 - . ID=CGI_10013394; scaffold1717 TRF Tandem_Repeat 111463 111497 70 + . . scaffold1717 GLEAN mRNA 114370 114502 0.999902 - . ID=CGI_10013394; scaffold1717 TRF Tandem_Repeat 114370 114502 169 + . . scaffold1717 GLEAN mRNA 116768 116829 0.999902 - . ID=CGI_10013394; scaffold1717 TRF Tandem_Repeat 116768 116829 108 + . . scaffold1717 GLEAN mRNA 118754 118799 0.999902 - . ID=CGI_10013394; scaffold1717 TRF Tandem_Repeat 118754 118799 92 + . . scaffold1717 GLEAN mRNA 125235 125277 0.999902 - . ID=CGI_10013394; scaffold1717 TRF Tandem_Repeat 125235 125277 86 + . . scaffold1717 GLEAN mRNA 132061 133017 1 + . ID=CGI_10013395; scaffold1717 TRF Tandem_Repeat 132061 133017 1309 + . . scaffold1717 GLEAN mRNA 146852 146943 0.999674 + . ID=CGI_10013396; scaffold1717 TRF Tandem_Repeat 146852 146943 147 + . . scaffold1717 GLEAN mRNA 179314 180025 0.790125 - . ID=CGI_10013398; scaffold1717 TRF Tandem_Repeat 179314 180025 862 + . . scaffold1717 GLEAN mRNA 179314 180025 0.790125 - . ID=CGI_10013398; scaffold1717 TRF Tandem_Repeat 179314 180025 1057 + . . scaffold1717 GLEAN mRNA 179314 180025 0.790125 - . ID=CGI_10013398; scaffold1717 TRF Tandem_Repeat 179314 180025 1041 + . . scaffold1717 GLEAN mRNA 185259 185304 0.790125 - . ID=CGI_10013398; scaffold1717 TRF Tandem_Repeat 185259 185304 92 + . . scaffold1717 GLEAN mRNA 185823 185847 0.790125 - . ID=CGI_10013398; scaffold1717 TRF Tandem_Repeat 185823 185847 50 + . . scaffold1717 GLEAN mRNA 185881 185908 0.790125 - . ID=CGI_10013398; scaffold1717 TRF Tandem_Repeat 185881 185908 56 + . . scaffold1717 GLEAN mRNA 205608 205633 0.790125 - . ID=CGI_10013398; scaffold1717 TRF Tandem_Repeat 205608 205633 52 + . . scaffold1717 GLEAN mRNA 221055 221102 0.493086 + . ID=CGI_10013399; scaffold1717 TRF Tandem_Repeat 221055 221102 96 + . . scaffold1717 GLEAN mRNA 226622 226762 0.493086 + . ID=CGI_10013399; scaffold1717 TRF Tandem_Repeat 226622 226762 138 + . . scaffold1717 GLEAN mRNA 341673 342332 0.999372 - . ID=CGI_10013403; scaffold1717 WUBlastX DNA_hAT-hATw 341673 342332 29 - . . scaffold960 GLEAN mRNA 64717 64769 0.59993 - . ID=CGI_10013406; scaffold960 TRF Tandem_Repeat 64717 64769 61 + . . scaffold960 GLEAN mRNA 76629 76689 0.99975 + . ID=CGI_10013408; scaffold960 TRF Tandem_Repeat 76629 76689 86 + . . scaffold960 GLEAN mRNA 218131 219197 0.999997 + . ID=CGI_10013412; scaffold960 TRF Tandem_Repeat 218131 219197 1532 + . . scaffold960 GLEAN mRNA 218131 219197 0.999997 + . ID=CGI_10013412; scaffold960 TRF Tandem_Repeat 218131 219197 1604 + . . scaffold960 GLEAN mRNA 311765 311905 0.499919 + . ID=CGI_10013413; scaffold960 TRF Tandem_Repeat 311765 311905 257 + . . scaffold960 GLEAN mRNA 348617 348667 0.592622 + . ID=CGI_10013415; scaffold960 TRF Tandem_Repeat 348617 348667 75 + . . scaffold960 GLEAN mRNA 348617 348687 0.592622 + . ID=CGI_10013415; scaffold960 TRF Tandem_Repeat 348617 348687 88 + . . scaffold960 GLEAN mRNA 348645 348692 0.592622 + . ID=CGI_10013415; scaffold960 TRF Tandem_Repeat 348645 348692 78 + . . scaffold960 GLEAN mRNA 348621 348692 0.592622 + . ID=CGI_10013415; scaffold960 TRF Tandem_Repeat 348621 348692 81 + . . scaffold960 GLEAN mRNA 349187 349246 0.592622 + . ID=CGI_10013415; scaffold960 TRF Tandem_Repeat 349187 349246 75 + . . scaffold960 GLEAN mRNA 349187 349246 0.592622 + . ID=CGI_10013415; scaffold960 TRF Tandem_Repeat 349187 349246 93 + . . scaffold960 GLEAN mRNA 350934 350983 0.592622 + . ID=CGI_10013415; scaffold960 TRF Tandem_Repeat 350934 350983 82 + . . scaffold1630 GLEAN mRNA 5666 5690 0.999999 + . ID=CGI_10013416; scaffold1630 TRF Tandem_Repeat 5666 5690 50 + . . scaffold1630 GLEAN mRNA 40105 40140 0.606786 + . ID=CGI_10013417; scaffold1630 TRF Tandem_Repeat 40105 40140 72 + . . scaffold1630 GLEAN mRNA 42637 42831 0.606786 + . ID=CGI_10013417; scaffold1630 TRF Tandem_Repeat 42637 42831 119 + . . scaffold1630 GLEAN mRNA 42743 42856 0.606786 + . ID=CGI_10013417; scaffold1630 TRF Tandem_Repeat 42743 42856 102 + . . scaffold1630 GLEAN mRNA 58636 58693 1 - . ID=CGI_10013419; scaffold1630 TRF Tandem_Repeat 58636 58693 116 + . . scaffold1630 GLEAN mRNA 68956 68998 0.992939 + . ID=CGI_10013420; scaffold1630 TRF Tandem_Repeat 68956 68998 86 + . . scaffold1630 GLEAN mRNA 80247 80402 0.992939 + . ID=CGI_10013420; scaffold1630 TRF Tandem_Repeat 80247 80402 136 + . . scaffold1630 GLEAN mRNA 89608 89681 1 - . ID=CGI_10013421; scaffold1630 TRF Tandem_Repeat 89608 89681 112 + . . scaffold1630 GLEAN mRNA 90560 90595 1 - . ID=CGI_10013421; scaffold1630 TRF Tandem_Repeat 90560 90595 72 + . . scaffold1630 GLEAN mRNA 91110 91154 1 - . ID=CGI_10013421; scaffold1630 TRF Tandem_Repeat 91110 91154 90 + . . scaffold1630 GLEAN mRNA 99610 99899 0.648556 - . ID=CGI_10013423; scaffold1630 TRF Tandem_Repeat 99610 99899 424 + . . scaffold1630 GLEAN mRNA 209397 209858 1 - . ID=CGI_10013425; scaffold1630 WUBlastX DNA_hAT 209397 209858 122 - . . scaffold1630 GLEAN mRNA 210030 210818 1 - . ID=CGI_10013425; scaffold1630 WUBlastX DNA_hAT 210030 210818 238 - . . scaffold1630 GLEAN mRNA 209316 209945 1 - . ID=CGI_10013425; scaffold1630 WUBlastX DNA_hAT 209316 209945 77 - . . scaffold1630 GLEAN mRNA 298974 299045 0.980735 - . ID=CGI_10013427; scaffold1630 TRF Tandem_Repeat 298974 299045 144 + . . scaffold1630 GLEAN mRNA 323536 323588 0.999998 + . ID=CGI_10013428; scaffold1630 TRF Tandem_Repeat 323536 323588 106 + . . scaffold1630 GLEAN mRNA 324244 324684 0.999998 + . ID=CGI_10013428; scaffold1630 TRF Tandem_Repeat 324244 324684 584 + . . scaffold1630 GLEAN mRNA 325152 325199 0.999998 + . ID=CGI_10013428; scaffold1630 TRF Tandem_Repeat 325152 325199 96 + . . scaffold1630 GLEAN mRNA 329173 329228 0.987773 - . ID=CGI_10013429; scaffold1630 TRF Tandem_Repeat 329173 329228 94 + . . scaffold1630 GLEAN mRNA 339774 339798 0.987773 - . ID=CGI_10013429; scaffold1630 TRF Tandem_Repeat 339774 339798 50 + . . scaffold888 GLEAN mRNA 77165 77639 0.776912 + . ID=CGI_10013442; scaffold888 TRF Tandem_Repeat 77165 77639 699 + . . scaffold888 GLEAN mRNA 145452 145569 0.99934 + . ID=CGI_10013449; scaffold888 TRF Tandem_Repeat 145452 145569 184 + . . scaffold888 GLEAN mRNA 149517 150029 0.644782 - . ID=CGI_10013450; scaffold888 WUBlastX LINE_L1-Tx1 149517 150029 26 - . . scaffold888 GLEAN mRNA 221623 222562 0.648316 + . ID=CGI_10013454; scaffold888 TRF Tandem_Repeat 221623 222562 611 + . . scaffold888 GLEAN mRNA 221713 221862 0.648316 + . ID=CGI_10013454; scaffold888 TRF Tandem_Repeat 221713 221862 138 + . . scaffold888 GLEAN mRNA 222711 222770 0.648316 + . ID=CGI_10013454; scaffold888 TRF Tandem_Repeat 222711 222770 120 + . . scaffold888 GLEAN mRNA 231187 231225 0.648316 + . ID=CGI_10013454; scaffold888 TRF Tandem_Repeat 231187 231225 78 + . . scaffold888 GLEAN mRNA 268340 269050 0.284124 + . ID=CGI_10013455; scaffold888 TRF Tandem_Repeat 268340 269050 309 + . . scaffold888 GLEAN mRNA 268512 269029 0.284124 + . ID=CGI_10013455; scaffold888 TRF Tandem_Repeat 268512 269029 608 + . . scaffold888 GLEAN mRNA 269274 269308 0.284124 + . ID=CGI_10013455; scaffold888 TRF Tandem_Repeat 269274 269308 54 + . . scaffold888 GLEAN mRNA 272184 272210 0.284124 + . ID=CGI_10013455; scaffold888 TRF Tandem_Repeat 272184 272210 54 + . . scaffold888 GLEAN mRNA 272276 272300 0.284124 + . ID=CGI_10013455; scaffold888 TRF Tandem_Repeat 272276 272300 50 + . . scaffold888 GLEAN mRNA 272298 272332 0.284124 + . ID=CGI_10013455; scaffold888 TRF Tandem_Repeat 272298 272332 70 + . . scaffold888 GLEAN mRNA 272966 273187 0.284124 + . ID=CGI_10013455; scaffold888 TRF Tandem_Repeat 272966 273187 266 + . . scaffold888 GLEAN mRNA 273568 273811 0.284124 + . ID=CGI_10013455; scaffold888 TRF Tandem_Repeat 273568 273811 312 + . . scaffold888 GLEAN mRNA 336303 336334 0.376374 - . ID=CGI_10013460; scaffold888 TRF Tandem_Repeat 336303 336334 55 + . . scaffold888 GLEAN mRNA 335687 335989 0.376374 - . ID=CGI_10013460; scaffold888 WUBlastX DNA_MuDR 335687 335989 48 - . . scaffold1 GLEAN mRNA 25683 25723 0.99696 - . ID=CGI_10013463; scaffold1 TRF Tandem_Repeat 25683 25723 50 + . . scaffold1 GLEAN mRNA 74766 74794 1 + . ID=CGI_10013468; scaffold1 TRF Tandem_Repeat 74766 74794 58 + . . scaffold1 GLEAN mRNA 165351 165425 0.742263 + . ID=CGI_10013469; scaffold1 TRF Tandem_Repeat 165351 165425 51 + . . scaffold1 GLEAN mRNA 170615 170980 0.742263 + . ID=CGI_10013469; scaffold1 WUBlastX LINE_L2 170615 170980 46 + . . scaffold1 GLEAN mRNA 170477 170866 0.742263 + . ID=CGI_10013469; scaffold1 WUBlastX LINE_CR1-L2 170477 170866 35 + . . scaffold1 GLEAN mRNA 169915 170229 0.742263 + . ID=CGI_10013469; scaffold1 WUBlastX LINE_CR1-L2 169915 170229 147 + . . scaffold1 GLEAN mRNA 169134 169247 0.742263 + . ID=CGI_10013469; scaffold1 WUBlastX LINE_L2 169134 169247 32 + . . scaffold1 GLEAN mRNA 169906 170277 0.742263 + . ID=CGI_10013469; scaffold1 WUBlastX LINE_CR1 169906 170277 48 + . . scaffold1 GLEAN mRNA 200975 201038 0.791644 + . ID=CGI_10013470; scaffold1 TRF Tandem_Repeat 200975 201038 60 + . . scaffold1 GLEAN mRNA 214108 214194 0.999128 - . ID=CGI_10013471; scaffold1 TRF Tandem_Repeat 214108 214194 131 + . . scaffold1 GLEAN mRNA 217217 217276 0.999128 - . ID=CGI_10013471; scaffold1 TRF Tandem_Repeat 217217 217276 120 + . . scaffold1 GLEAN mRNA 220104 220146 0.999128 - . ID=CGI_10013471; scaffold1 TRF Tandem_Repeat 220104 220146 50 + . . scaffold1 GLEAN mRNA 227115 227170 0.999128 - . ID=CGI_10013471; scaffold1 TRF Tandem_Repeat 227115 227170 87 + . . scaffold1 GLEAN mRNA 236968 237018 0.63415 - . ID=CGI_10013472; scaffold1 TRF Tandem_Repeat 236968 237018 50 + . . scaffold1 GLEAN mRNA 252414 253052 0.998426 - . ID=CGI_10013473; scaffold1 WUBlastX DNA_TcMar-Tc1 252414 253052 109 - . . scaffold1 GLEAN mRNA 253294 253386 0.998426 - . ID=CGI_10013473; scaffold1 WUBlastX DNA_TcMar-Tc1 253294 253386 23 - . . scaffold1 GLEAN mRNA 252414 252653 0.998426 - . ID=CGI_10013473; scaffold1 WUBlastX DNA_TcMar-Tc1 252414 252653 142 - . . scaffold1 GLEAN mRNA 252414 252710 0.998426 - . ID=CGI_10013473; scaffold1 WUBlastX DNA_TcMar-Tc1 252414 252710 139 - . . scaffold1 GLEAN mRNA 253069 253344 0.998426 - . ID=CGI_10013473; scaffold1 WUBlastX DNA_TcMar-Tc1 253069 253344 29 - . . scaffold1 GLEAN mRNA 266781 266966 0.995923 + . ID=CGI_10013474; scaffold1 WUBlastX DNA_Harbinger 266781 266966 84 - . . scaffold1 GLEAN mRNA 266956 267198 0.995923 + . ID=CGI_10013474; scaffold1 WUBlastX DNA_Harbinger 266956 267198 32 - . . scaffold1 GLEAN mRNA 266956 267147 0.995923 + . ID=CGI_10013474; scaffold1 WUBlastX DNA_Harbinger 266956 267147 54 - . . scaffold1 GLEAN mRNA 266706 266864 0.995923 + . ID=CGI_10013474; scaffold1 WUBlastX DNA_Harbinger 266706 266864 85 - . . scaffold1 GLEAN mRNA 288147 288231 0.990125 - . ID=CGI_10013477; scaffold1 TRF Tandem_Repeat 288147 288231 170 + . . scaffold1 GLEAN mRNA 333193 333233 0.749562 - . ID=CGI_10013479; scaffold1 TRF Tandem_Repeat 333193 333233 57 + . . scaffold209 GLEAN mRNA 83370 85577 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 83370 85577 3242 + . . scaffold209 GLEAN mRNA 85961 86369 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 85961 86369 258 + . . scaffold209 GLEAN mRNA 85930 86375 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 85930 86375 278 + . . scaffold209 GLEAN mRNA 88206 88370 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 88206 88370 172 + . . scaffold209 GLEAN mRNA 89438 90001 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 89438 90001 669 + . . scaffold209 GLEAN mRNA 94809 95054 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 94809 95054 233 + . . scaffold209 GLEAN mRNA 98645 99124 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 98645 99124 708 + . . scaffold209 GLEAN mRNA 104541 107188 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 104541 107188 3875 + . . scaffold209 GLEAN mRNA 119155 119233 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 119155 119233 95 + . . scaffold209 GLEAN mRNA 123877 124206 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 123877 124206 349 + . . scaffold209 GLEAN mRNA 127355 127538 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 127355 127538 278 + . . scaffold209 GLEAN mRNA 127550 128231 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 127550 128231 743 + . . scaffold209 GLEAN mRNA 132226 132801 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 132226 132801 881 + . . scaffold209 GLEAN mRNA 134970 135165 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 134970 135165 223 + . . scaffold209 GLEAN mRNA 135977 136241 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 135977 136241 331 + . . scaffold209 GLEAN mRNA 136322 136892 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 136322 136892 801 + . . scaffold209 GLEAN mRNA 104541 107188 0.996774 - . ID=CGI_10013482; scaffold209 TRF Tandem_Repeat 104541 107188 3875 + . . scaffold209 GLEAN mRNA 119155 119233 0.996774 - . ID=CGI_10013482; scaffold209 TRF Tandem_Repeat 119155 119233 95 + . . scaffold209 GLEAN mRNA 146154 146953 0.999936 - . ID=CGI_10013483; scaffold209 TRF Tandem_Repeat 146154 146953 1351 + . . scaffold209 GLEAN mRNA 146332 146559 0.999936 - . ID=CGI_10013483; scaffold209 TRF Tandem_Repeat 146332 146559 102 + . . scaffold209 GLEAN mRNA 163995 164443 1 + . ID=CGI_10013485; scaffold209 TRF Tandem_Repeat 163995 164443 156 + . . scaffold209 GLEAN mRNA 164067 164456 1 + . ID=CGI_10013485; scaffold209 TRF Tandem_Repeat 164067 164456 458 + . . scaffold209 GLEAN mRNA 169421 170089 1 + . ID=CGI_10013486; scaffold209 TRF Tandem_Repeat 169421 170089 839 + . . scaffold209 GLEAN mRNA 178244 178291 0.999987 + . ID=CGI_10013489; scaffold209 TRF Tandem_Repeat 178244 178291 96 + . . scaffold209 GLEAN mRNA 181680 183725 0.99166 - . ID=CGI_10013490; scaffold209 TRF Tandem_Repeat 181680 183725 2579 + . . scaffold209 GLEAN mRNA 190856 191304 0.99166 - . ID=CGI_10013490; scaffold209 TRF Tandem_Repeat 190856 191304 390 + . . scaffold209 GLEAN mRNA 193862 193916 0.99166 - . ID=CGI_10013490; scaffold209 TRF Tandem_Repeat 193862 193916 110 + . . scaffold209 GLEAN mRNA 201237 202235 0.99166 - . ID=CGI_10013490; scaffold209 TRF Tandem_Repeat 201237 202235 1226 + . . scaffold209 GLEAN mRNA 230977 231634 0.405449 + . ID=CGI_10013492; scaffold209 TRF Tandem_Repeat 230977 231634 538 + . . scaffold209 GLEAN mRNA 249233 249262 0.405449 + . ID=CGI_10013492; scaffold209 TRF Tandem_Repeat 249233 249262 60 + . . scaffold209 GLEAN mRNA 251992 252048 0.405449 + . ID=CGI_10013492; scaffold209 TRF Tandem_Repeat 251992 252048 53 + . . scaffold209 GLEAN mRNA 255238 256382 0.405449 + . ID=CGI_10013492; scaffold209 TRF Tandem_Repeat 255238 256382 1116 + . . scaffold209 GLEAN mRNA 258297 258324 0.405449 + . ID=CGI_10013492; scaffold209 TRF Tandem_Repeat 258297 258324 56 + . . scaffold209 GLEAN mRNA 252893 253183 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 252893 253183 34 + . . scaffold209 GLEAN mRNA 254266 254964 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 254266 254964 251 + . . scaffold209 GLEAN mRNA 251350 251964 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_Pao 251350 251964 516 + . . scaffold209 GLEAN mRNA 250370 250819 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 250370 250819 145 + . . scaffold209 GLEAN mRNA 250810 251283 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 250810 251283 149 + . . scaffold209 GLEAN mRNA 251253 251363 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 251253 251363 67 + . . scaffold209 GLEAN mRNA 258658 258852 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_hAT-Tip100 258658 258852 56 - . . scaffold209 GLEAN mRNA 258852 259121 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_hAT-Tip100 258852 259121 134 - . . scaffold209 GLEAN mRNA 259313 259774 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_hAT-Tip100 259313 259774 214 - . . scaffold209 GLEAN mRNA 259352 259861 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_hAT-Tip100 259352 259861 178 - . . scaffold209 GLEAN mRNA 261392 261778 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_TcMar-Tc1 261392 261778 120 + . . scaffold209 GLEAN mRNA 252999 253778 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 252999 253778 119 + . . scaffold209 GLEAN mRNA 253767 254000 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 253767 254000 110 + . . scaffold209 GLEAN mRNA 254000 254143 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 254000 254143 33 + . . scaffold209 GLEAN mRNA 259298 259972 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_hAT-Tip100 259298 259972 44 - . . scaffold209 GLEAN mRNA 256723 256818 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 256723 256818 29 + . . scaffold209 GLEAN mRNA 256821 256901 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_DIRS 256821 256901 48 + . . scaffold209 GLEAN mRNA 258759 259085 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_hAT-Charlie 258759 259085 92 - . . scaffold209 GLEAN mRNA 258410 258613 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_hAT-Tip100 258410 258613 40 - . . scaffold209 GLEAN mRNA 258595 258627 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_hAT-Tip100 258595 258627 21 - . . scaffold209 GLEAN mRNA 261772 262245 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_TcMar-Tc1 261772 262296 146 + . . scaffold209 GLEAN mRNA 261775 262212 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX DNA_TcMar-Tc1 261775 262212 313 + . . scaffold1131 GLEAN mRNA 41565 41622 0.837422 + . ID=CGI_10013495; scaffold1131 TRF Tandem_Repeat 41565 41622 116 + . . scaffold1131 GLEAN mRNA 60147 60179 0.999558 + . ID=CGI_10013498; scaffold1131 TRF Tandem_Repeat 60147 60179 57 + . . scaffold1131 GLEAN mRNA 65664 65718 0.873691 - . ID=CGI_10013499; scaffold1131 TRF Tandem_Repeat 65664 65718 74 + . . scaffold1131 GLEAN mRNA 187685 187762 0.813424 - . ID=CGI_10013503; scaffold1131 TRF Tandem_Repeat 187685 187762 156 + . . scaffold1131 GLEAN mRNA 206344 206522 0.648458 - . ID=CGI_10013504; scaffold1131 TRF Tandem_Repeat 206344 206522 225 + . . scaffold1131 GLEAN mRNA 248210 248434 0.387708 - . ID=CGI_10013505; scaffold1131 WUBlastX LINE_R2 248210 248434 89 - . . scaffold1131 GLEAN mRNA 304143 304292 1 + . ID=CGI_10013506; scaffold1131 WUBlastX DNA_Kolobok 304143 304292 81 + . . scaffold1131 GLEAN mRNA 325975 326026 0.261513 + . ID=CGI_10013507; scaffold1131 TRF Tandem_Repeat 325975 326026 86 + . . scaffold172 GLEAN mRNA 15846 16010 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX LTR_Gypsy 15846 16010 69 + . . scaffold172 GLEAN mRNA 15657 15980 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX LTR_Gypsy 15657 15980 51 + . . scaffold172 GLEAN mRNA 16010 16171 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX LTR_Gypsy 16010 16171 95 + . . scaffold172 GLEAN mRNA 15822 15950 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX LTR_Gypsy 15822 15950 69 + . . scaffold172 GLEAN mRNA 15798 15950 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX LTR_Gypsy 15798 15950 60 + . . scaffold172 GLEAN mRNA 9327 9908 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX DNA_Crypton 9327 9908 174 + . . scaffold172 GLEAN mRNA 10194 10568 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX DNA_Crypton 10194 10568 52 + . . scaffold172 GLEAN mRNA 15846 15950 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX LTR_Gypsy 15846 15950 84 + . . scaffold172 GLEAN mRNA 10030 10104 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX DNA_Crypton 10030 10104 26 + . . scaffold172 GLEAN mRNA 10188 10463 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX DNA_Crypton 10188 10463 59 + . . scaffold172 GLEAN mRNA 16016 16297 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX LTR_Gypsy 16016 16297 73 + . . scaffold172 GLEAN mRNA 16648 16839 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX LTR_Gypsy 16648 16839 46 + . . scaffold172 GLEAN mRNA 16848 17732 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX LTR_Gypsy-Cigr 16848 17732 174 + . . scaffold172 GLEAN mRNA 16309 16446 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX LTR_Gypsy 16309 16446 59 + . . scaffold172 GLEAN mRNA 16342 16524 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX LTR_Gypsy-Cigr 16342 16524 71 + . . scaffold172 GLEAN mRNA 36499 36533 0.723762 + . ID=CGI_10013509; scaffold172 TRF Tandem_Repeat 36499 36533 70 + . . scaffold172 GLEAN mRNA 61379 61408 0.999949 - . ID=CGI_10013510; scaffold172 TRF Tandem_Repeat 61379 61408 60 + . . scaffold172 GLEAN mRNA 108593 109995 0.385808 - . ID=CGI_10013515; scaffold172 TRF Tandem_Repeat 108593 109995 1686 + . . scaffold172 GLEAN mRNA 108593 109995 1 + . ID=CGI_10013516; scaffold172 TRF Tandem_Repeat 108593 109995 1686 + . . scaffold172 GLEAN mRNA 124173 124332 0.999999 + . ID=CGI_10013517; scaffold172 TRF Tandem_Repeat 124173 124332 151 + . . scaffold172 GLEAN mRNA 131087 131114 0.999676 - . ID=CGI_10013518; scaffold172 TRF Tandem_Repeat 131087 131114 56 + . . scaffold172 GLEAN mRNA 167735 167776 0.999669 - . ID=CGI_10013520; scaffold172 TRF Tandem_Repeat 167735 167776 84 + . . scaffold172 GLEAN mRNA 174899 174939 0.544386 + . ID=CGI_10013522; scaffold172 TRF Tandem_Repeat 174899 174939 52 + . . scaffold172 GLEAN mRNA 189849 189908 0.544386 + . ID=CGI_10013522; scaffold172 TRF Tandem_Repeat 189849 189908 102 + . . scaffold172 GLEAN mRNA 180769 181245 0.544386 + . ID=CGI_10013522; scaffold172 WUBlastX DNA_TcMar-Marin 180769 181245 77 - . . scaffold172 GLEAN mRNA 180823 181344 0.544386 + . ID=CGI_10013522; scaffold172 WUBlastX DNA_TcMar-Marin 180823 181344 70 - . . scaffold172 GLEAN mRNA 189849 189908 0.911249 - . ID=CGI_10013523; scaffold172 TRF Tandem_Repeat 189849 189908 102 + . . scaffold172 GLEAN mRNA 201622 201665 1 - . ID=CGI_10013524; scaffold172 TRF Tandem_Repeat 201622 201665 88 + . . scaffold172 GLEAN mRNA 212309 213932 0.586872 - . ID=CGI_10013525; scaffold172 TRF Tandem_Repeat 212309 213932 2498 + . . scaffold172 GLEAN mRNA 278180 278356 0.998306 - . ID=CGI_10013528; scaffold172 WUBlastX LTR_Ngaro 278180 278356 118 - . . scaffold172 GLEAN mRNA 278846 279136 0.998306 - . ID=CGI_10013528; scaffold172 WUBlastX LTR_Ngaro 278846 279136 34 - . . scaffold172 GLEAN mRNA 279507 279881 0.998306 - . ID=CGI_10013528; scaffold172 WUBlastX LTR_Ngaro 279507 279881 212 - . . scaffold172 GLEAN mRNA 279067 279492 0.998306 - . ID=CGI_10013528; scaffold172 WUBlastX LTR_Ngaro 279067 279492 204 - . . scaffold172 GLEAN mRNA 278293 278829 0.998306 - . ID=CGI_10013528; scaffold172 WUBlastX LTR_Ngaro 278293 278829 108 - . . scaffold172 GLEAN mRNA 330842 331156 0.887396 - . ID=CGI_10013531; scaffold172 TRF Tandem_Repeat 330842 331156 167 + . . scaffold172 GLEAN mRNA 330802 331235 0.887396 - . ID=CGI_10013531; scaffold172 TRF Tandem_Repeat 330802 331235 304 + . . scaffold172 GLEAN mRNA 330879 331260 0.887396 - . ID=CGI_10013531; scaffold172 TRF Tandem_Repeat 330879 331260 148 + . . scaffold172 GLEAN mRNA 331693 332047 0.887396 - . ID=CGI_10013531; scaffold172 TRF Tandem_Repeat 331693 332047 656 + . . scaffold1865 GLEAN mRNA 12434 12474 1 - . ID=CGI_10013533; scaffold1865 TRF Tandem_Repeat 12434 12474 57 + . . scaffold1865 GLEAN mRNA 12449 12487 1 - . ID=CGI_10013533; scaffold1865 TRF Tandem_Repeat 12449 12487 51 + . . scaffold1865 GLEAN mRNA 124613 124829 0.998221 + . ID=CGI_10013535; scaffold1865 TRF Tandem_Repeat 124613 124829 254 + . . scaffold1865 GLEAN mRNA 124613 124829 0.998221 + . ID=CGI_10013535; scaffold1865 TRF Tandem_Repeat 124613 124829 245 + . . scaffold1865 GLEAN mRNA 125474 125861 0.998221 + . ID=CGI_10013535; scaffold1865 TRF Tandem_Repeat 125474 125861 436 + . . scaffold1865 GLEAN mRNA 125474 125861 0.998221 + . ID=CGI_10013535; scaffold1865 TRF Tandem_Repeat 125474 125861 564 + . . scaffold1865 GLEAN mRNA 135238 135513 0.998221 + . ID=CGI_10013535; scaffold1865 WUBlastX DNA_TcMar-Tc1 135238 135513 36 - . . scaffold1865 GLEAN mRNA 134537 135226 0.998221 + . ID=CGI_10013535; scaffold1865 WUBlastX DNA_TcMar-Tc1 134537 135226 381 - . . scaffold1865 GLEAN mRNA 165869 165955 0.446905 - . ID=CGI_10013536; scaffold1865 TRF Tandem_Repeat 165869 165955 72 + . . scaffold1865 GLEAN mRNA 226195 226230 0.998765 - . ID=CGI_10013544; scaffold1865 TRF Tandem_Repeat 226195 226230 72 + . . scaffold1865 GLEAN mRNA 236945 237124 0.998765 - . ID=CGI_10013544; scaffold1865 WUBlastX LINE_L1-Tx1 236945 237124 31 - . . scaffold1865 GLEAN mRNA 275076 276147 0.640148 - . ID=CGI_10013547; scaffold1865 TRF Tandem_Repeat 275076 276147 1704 + . . scaffold1865 GLEAN mRNA 274539 276147 0.640148 - . ID=CGI_10013547; scaffold1865 TRF Tandem_Repeat 274539 276147 2089 + . . scaffold1865 GLEAN mRNA 282097 282166 0.640148 - . ID=CGI_10013547; scaffold1865 TRF Tandem_Repeat 282097 282166 70 + . . scaffold1865 GLEAN mRNA 282097 282154 0.640148 - . ID=CGI_10013547; scaffold1865 TRF Tandem_Repeat 282097 282154 62 + . . scaffold1865 GLEAN mRNA 293572 293640 0.640148 - . ID=CGI_10013547; scaffold1865 WUBlastX LINE_RTE-X 293572 293640 32 + . . scaffold1865 GLEAN mRNA 293053 293616 0.640148 - . ID=CGI_10013547; scaffold1865 WUBlastX LINE_RTE-X 293053 293616 67 + . . scaffold1865 GLEAN mRNA 291986 292576 0.640148 - . ID=CGI_10013547; scaffold1865 WUBlastX LINE_RTE-X 291986 292576 142 + . . scaffold1865 GLEAN mRNA 291884 292267 0.640148 - . ID=CGI_10013547; scaffold1865 WUBlastX LINE_Proto2 291884 292267 32 + . . scaffold1865 GLEAN mRNA 332773 332821 1 - . ID=CGI_10013548; scaffold1865 TRF Tandem_Repeat 332773 332821 98 + . . scaffold1865 GLEAN mRNA 339042 339070 1 - . ID=CGI_10013549; scaffold1865 TRF Tandem_Repeat 339042 339070 58 + . . scaffold1865 GLEAN mRNA 351580 351628 0.999624 + . ID=CGI_10013550; scaffold1865 TRF Tandem_Repeat 351580 351628 98 + . . scaffold1865 GLEAN mRNA 354202 354264 0.999624 + . ID=CGI_10013550; scaffold1865 TRF Tandem_Repeat 354202 354264 81 + . . scaffold1865 GLEAN mRNA 356036 356281 0.999624 + . ID=CGI_10013550; scaffold1865 WUBlastX LINE_CR1-L2 356036 356281 39 - . . scaffold1865 GLEAN mRNA 355701 356030 0.999624 + . ID=CGI_10013550; scaffold1865 WUBlastX LINE_L2 355701 356030 56 - . . scaffold31 GLEAN mRNA 12999 13052 0.792688 - . ID=CGI_10013551; scaffold31 TRF Tandem_Repeat 12999 13052 74 + . . scaffold31 GLEAN mRNA 11350 12948 0.792688 - . ID=CGI_10013551; scaffold31 WUBlastX LINE_L1-Tx1 11350 12948 319 - . . scaffold31 GLEAN mRNA 15327 16022 0.792688 - . ID=CGI_10013551; scaffold31 WUBlastX LINE_L2 15327 16022 114 - . . scaffold31 GLEAN mRNA 15324 15875 0.792688 - . ID=CGI_10013551; scaffold31 WUBlastX LINE_L2 15324 15875 115 - . . scaffold31 GLEAN mRNA 15264 15599 0.792688 - . ID=CGI_10013551; scaffold31 WUBlastX LINE_RTE-BovB 15264 15599 77 - . . scaffold31 GLEAN mRNA 15375 16133 0.792688 - . ID=CGI_10013551; scaffold31 WUBlastX LINE_L1 15375 16166 40 - . . scaffold31 GLEAN mRNA 14636 14737 0.792688 - . ID=CGI_10013551; scaffold31 WUBlastX LINE_L1-Tx1 14636 14737 32 - . . scaffold31 GLEAN mRNA 14675 14986 0.792688 - . ID=CGI_10013551; scaffold31 WUBlastX LINE_L1-Tx1 14675 14986 164 - . . scaffold31 GLEAN mRNA 14711 15043 0.792688 - . ID=CGI_10013551; scaffold31 WUBlastX LINE_L1-Tx1 14711 15043 36 - . . scaffold31 GLEAN mRNA 91813 91846 0.889522 + . ID=CGI_10013557; scaffold31 TRF Tandem_Repeat 91813 91846 68 + . . scaffold31 GLEAN mRNA 99121 99446 0.889522 + . ID=CGI_10013557; scaffold31 TRF Tandem_Repeat 99121 99446 234 + . . scaffold31 GLEAN mRNA 99121 99492 0.889522 + . ID=CGI_10013557; scaffold31 TRF Tandem_Repeat 99121 99492 575 + . . scaffold31 GLEAN mRNA 131393 131533 0.976297 + . ID=CGI_10013558; scaffold31 TRF Tandem_Repeat 131393 131533 111 + . . scaffold31 GLEAN mRNA 132462 132595 0.976297 + . ID=CGI_10013558; scaffold31 TRF Tandem_Repeat 132462 132595 104 + . . scaffold31 GLEAN mRNA 171382 171487 0.965717 + . ID=CGI_10013560; scaffold31 TRF Tandem_Repeat 171382 171487 51 + . . scaffold31 GLEAN mRNA 171446 171498 0.965717 + . ID=CGI_10013560; scaffold31 TRF Tandem_Repeat 171446 171498 52 + . . scaffold31 GLEAN mRNA 174157 174246 0.965717 + . ID=CGI_10013560; scaffold31 TRF Tandem_Repeat 174157 174246 90 + . . scaffold31 GLEAN mRNA 175966 176058 0.965717 + . ID=CGI_10013560; scaffold31 TRF Tandem_Repeat 175966 176058 96 + . . scaffold31 GLEAN mRNA 171751 172242 0.965717 + . ID=CGI_10013560; scaffold31 WUBlastX LINE_RTE-X 171751 172242 61 - . . scaffold31 GLEAN mRNA 171763 172131 0.965717 + . ID=CGI_10013560; scaffold31 WUBlastX LINE_RTE-X 171763 172131 117 - . . scaffold31 GLEAN mRNA 182071 183497 0.965717 + . ID=CGI_10013560; scaffold31 TRF Tandem_Repeat 182071 183791 1466 + . . scaffold31 GLEAN mRNA 180763 181167 0.965717 + . ID=CGI_10013560; scaffold31 WUBlastX DNA_TcMar-Tc1 180763 181167 88 - . . scaffold31 GLEAN mRNA 181135 181413 0.965717 + . ID=CGI_10013560; scaffold31 WUBlastX DNA_TcMar-Tc1 181135 181413 43 - . . scaffold31 GLEAN mRNA 180766 181050 0.965717 + . ID=CGI_10013560; scaffold31 WUBlastX DNA_TcMar-Tc1 180766 181050 173 - . . scaffold31 GLEAN mRNA 204482 204506 0.991871 - . ID=CGI_10013561; scaffold31 TRF Tandem_Repeat 204482 204506 50 + . . scaffold31 GLEAN mRNA 209131 210144 0.991871 - . ID=CGI_10013561; scaffold31 WUBlastX DNA_Maverick 209131 210144 541 - . . scaffold31 GLEAN mRNA 209048 209113 0.991871 - . ID=CGI_10013561; scaffold31 WUBlastX DNA_Maverick 209048 209113 22 - . . scaffold31 GLEAN mRNA 209063 209113 0.991871 - . ID=CGI_10013561; scaffold31 WUBlastX DNA_Maverick 209063 209113 24 - . . scaffold1673 GLEAN mRNA 11876 11993 0.998009 - . ID=CGI_10013565; scaffold1673 TRF Tandem_Repeat 11876 11993 155 + . . scaffold1673 GLEAN mRNA 17559 17717 0.998009 - . ID=CGI_10013565; scaffold1673 TRF Tandem_Repeat 17559 17717 126 + . . scaffold1673 GLEAN mRNA 25937 26085 0.998009 - . ID=CGI_10013565; scaffold1673 TRF Tandem_Repeat 25937 26085 282 + . . scaffold1673 GLEAN mRNA 27336 27749 0.998009 - . ID=CGI_10013565; scaffold1673 TRF Tandem_Repeat 27336 27749 533 + . . scaffold1673 GLEAN mRNA 29808 29862 0.998009 - . ID=CGI_10013565; scaffold1673 TRF Tandem_Repeat 29808 29862 110 + . . scaffold1673 GLEAN mRNA 11876 11993 1 + . ID=CGI_10013566; scaffold1673 TRF Tandem_Repeat 11876 11993 155 + . . scaffold1673 GLEAN mRNA 52988 53125 0.720264 - . ID=CGI_10013570; scaffold1673 WUBlastX LTR_Gypsy 52988 53125 131 - . . scaffold1673 GLEAN mRNA 52838 53119 0.720264 - . ID=CGI_10013570; scaffold1673 WUBlastX LTR_Gypsy 52838 53119 94 - . . scaffold1673 GLEAN mRNA 53688 54020 0.720264 - . ID=CGI_10013570; scaffold1673 WUBlastX LTR_Gypsy-Cigr 53688 54020 89 - . . scaffold1673 GLEAN mRNA 52922 53119 0.720264 - . ID=CGI_10013570; scaffold1673 WUBlastX LTR_Gypsy-Cigr 52922 53119 125 - . . scaffold1673 GLEAN mRNA 75179 75234 0.828275 + . ID=CGI_10013571; scaffold1673 TRF Tandem_Repeat 75179 75234 53 + . . scaffold1673 GLEAN mRNA 75176 75231 0.828275 + . ID=CGI_10013571; scaffold1673 TRF Tandem_Repeat 75176 75231 60 + . . scaffold1673 GLEAN mRNA 79735 79779 0.828275 + . ID=CGI_10013571; scaffold1673 TRF Tandem_Repeat 79735 79779 63 + . . scaffold1673 GLEAN mRNA 87262 87378 0.828275 + . ID=CGI_10013571; scaffold1673 WUBlastX LTR_Ngaro 87262 87378 72 - . . scaffold1673 GLEAN mRNA 101114 101165 0.828275 + . ID=CGI_10013571; scaffold1673 TRF Tandem_Repeat 101114 101165 104 + . . scaffold1673 GLEAN mRNA 106454 106484 0.828275 + . ID=CGI_10013571; scaffold1673 TRF Tandem_Repeat 106454 106484 53 + . . scaffold1673 GLEAN mRNA 99037 99915 0.828275 + . ID=CGI_10013571; scaffold1673 WUBlastX LINE_L1 99037 99915 64 + . . scaffold1673 GLEAN mRNA 103994 104674 0.828275 + . ID=CGI_10013571; scaffold1673 WUBlastX DNA_Crypton 103994 104674 223 + . . scaffold1673 GLEAN mRNA 99172 100023 0.828275 + . ID=CGI_10013571; scaffold1673 WUBlastX LINE_L1-Tx1 99172 100023 477 + . . scaffold1673 GLEAN mRNA 100031 100969 0.828275 + . ID=CGI_10013571; scaffold1673 WUBlastX LINE_L1-Tx1 100031 100969 158 + . . scaffold1673 GLEAN mRNA 118030 118056 0.392699 - . ID=CGI_10013572; scaffold1673 TRF Tandem_Repeat 118030 118056 54 + . . scaffold1673 GLEAN mRNA 170568 170601 0.361367 - . ID=CGI_10013573; scaffold1673 TRF Tandem_Repeat 170568 170601 50 + . . scaffold1673 GLEAN mRNA 175175 175213 0.361367 - . ID=CGI_10013573; scaffold1673 TRF Tandem_Repeat 175175 175213 51 + . . scaffold1673 GLEAN mRNA 175213 175252 0.361367 - . ID=CGI_10013573; scaffold1673 TRF Tandem_Repeat 175213 175252 80 + . . scaffold1673 GLEAN mRNA 229668 230372 0.999027 - . ID=CGI_10013574; scaffold1673 TRF Tandem_Repeat 229668 230372 888 + . . scaffold1673 GLEAN mRNA 247905 248481 1 + . ID=CGI_10013575; scaffold1673 TRF Tandem_Repeat 247905 248481 863 + . . scaffold1673 GLEAN mRNA 310616 310692 0.999675 - . ID=CGI_10013579; scaffold1673 TRF Tandem_Repeat 310616 310692 70 + . . scaffold1673 GLEAN mRNA 321501 321733 0.999544 + . ID=CGI_10013580; scaffold1673 TRF Tandem_Repeat 321501 321733 394 + . . scaffold1673 GLEAN mRNA 321734 322190 0.999544 + . ID=CGI_10013580; scaffold1673 TRF Tandem_Repeat 321734 322190 702 + . . scaffold1673 GLEAN mRNA 322192 322476 0.999544 + . ID=CGI_10013580; scaffold1673 TRF Tandem_Repeat 322192 322476 247 + . . scaffold1673 GLEAN mRNA 337559 337693 0.811348 + . ID=CGI_10013581; scaffold1673 WUBlastX LINE_RTE-BovB 337559 337693 51 - . . scaffold458 GLEAN mRNA 2571 2792 0.861189 + . ID=CGI_10013583; scaffold458 TRF Tandem_Repeat 2571 2792 154 + . . scaffold458 GLEAN mRNA 2572 2792 0.861189 + . ID=CGI_10013583; scaffold458 TRF Tandem_Repeat 2572 2792 399 + . . scaffold458 GLEAN mRNA 7454 7500 0.861189 + . ID=CGI_10013583; scaffold458 TRF Tandem_Repeat 7454 7500 69 + . . scaffold458 GLEAN mRNA 109061 109086 0.999785 + . ID=CGI_10013589; scaffold458 TRF Tandem_Repeat 109061 109086 52 + . . scaffold458 GLEAN mRNA 109116 109174 0.999785 + . ID=CGI_10013589; scaffold458 TRF Tandem_Repeat 109116 109174 118 + . . scaffold458 GLEAN mRNA 109754 110149 0.999785 + . ID=CGI_10013589; scaffold458 WUBlastX LTR_Copia 109754 110149 26 + . . scaffold458 GLEAN mRNA 171860 172369 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 171860 172369 155 + . . scaffold458 GLEAN mRNA 172638 172910 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 172638 172910 63 + . . scaffold458 GLEAN mRNA 176393 176665 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 176393 176665 63 + . . scaffold458 GLEAN mRNA 171737 172504 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 171737 172504 107 + . . scaffold458 GLEAN mRNA 172728 172922 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 172728 172922 83 + . . scaffold458 GLEAN mRNA 172907 174247 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 172907 174247 851 + . . scaffold458 GLEAN mRNA 176483 176677 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 176483 176677 83 + . . scaffold458 GLEAN mRNA 176662 178002 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 176662 178002 851 + . . scaffold458 GLEAN mRNA 175954 176097 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 175954 176097 92 + . . scaffold458 GLEAN mRNA 175999 176259 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 175999 176259 35 + . . scaffold458 GLEAN mRNA 171914 172342 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 171914 172342 191 + . . scaffold458 GLEAN mRNA 174196 175155 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 174196 175155 431 + . . scaffold458 GLEAN mRNA 177951 178910 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 177951 178910 431 + . . scaffold458 GLEAN mRNA 175957 176124 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 175957 176124 57 + . . scaffold458 GLEAN mRNA 203897 203923 0.999672 - . ID=CGI_10013592; scaffold458 TRF Tandem_Repeat 203897 203923 54 + . . scaffold458 GLEAN mRNA 209714 209740 0.999672 - . ID=CGI_10013592; scaffold458 TRF Tandem_Repeat 209714 209740 54 + . . scaffold458 GLEAN mRNA 248723 248829 1 - . ID=CGI_10013594; scaffold458 TRF Tandem_Repeat 248723 248829 189 + . . scaffold458 GLEAN mRNA 248723 248829 0.61071 + . ID=CGI_10013595; scaffold458 TRF Tandem_Repeat 248723 248829 189 + . . scaffold458 GLEAN mRNA 271153 271197 0.96493 - . ID=CGI_10013596; scaffold458 TRF Tandem_Repeat 271153 271197 90 + . . scaffold404 GLEAN mRNA 75606 76372 0.99427 - . ID=CGI_10013603; scaffold404 TRF Tandem_Repeat 75606 76372 992 + . . scaffold404 GLEAN mRNA 77820 78518 0.99427 - . ID=CGI_10013603; scaffold404 WUBlastX LINE_L1-Tx1 77820 78518 68 + . . scaffold404 GLEAN mRNA 122048 122091 0.991006 + . ID=CGI_10013604; scaffold404 TRF Tandem_Repeat 122048 122091 88 + . . scaffold404 GLEAN mRNA 321313 321340 0.297334 - . ID=CGI_10013607; scaffold404 TRF Tandem_Repeat 321313 321340 56 + . . scaffold404 GLEAN mRNA 322978 323915 0.297334 - . ID=CGI_10013607; scaffold404 TRF Tandem_Repeat 322978 323915 1074 + . . scaffold404 GLEAN mRNA 324225 324267 0.297334 - . ID=CGI_10013607; scaffold404 TRF Tandem_Repeat 324225 324267 59 + . . scaffold404 GLEAN mRNA 324319 324408 0.297334 - . ID=CGI_10013607; scaffold404 TRF Tandem_Repeat 324319 324408 61 + . . scaffold404 GLEAN mRNA 326413 326463 0.297334 - . ID=CGI_10013607; scaffold404 TRF Tandem_Repeat 326413 326463 102 + . . scaffold404 GLEAN mRNA 318413 318616 0.297334 - . ID=CGI_10013607; scaffold404 WUBlastX LTR_DIRS 318413 318616 75 + . . scaffold404 GLEAN mRNA 318644 318871 0.297334 - . ID=CGI_10013607; scaffold404 WUBlastX LTR_DIRS 318644 318871 61 + . . scaffold404 GLEAN mRNA 320633 320692 0.297334 - . ID=CGI_10013607; scaffold404 WUBlastX LTR_DIRS 320633 320692 26 + . . scaffold404 GLEAN mRNA 317796 318140 0.297334 - . ID=CGI_10013607; scaffold404 WUBlastX LTR_DIRS 317796 318140 168 + . . scaffold404 GLEAN mRNA 318101 318646 0.297334 - . ID=CGI_10013607; scaffold404 WUBlastX LTR_DIRS 318101 318646 34 + . . scaffold404 GLEAN mRNA 320698 320841 0.297334 - . ID=CGI_10013607; scaffold404 WUBlastX LTR_DIRS 320698 320841 54 + . . scaffold404 GLEAN mRNA 320331 320609 0.297334 - . ID=CGI_10013607; scaffold404 WUBlastX LTR_DIRS 320331 320609 36 + . . scaffold404 GLEAN mRNA 345301 345540 0.651123 - . ID=CGI_10013608; scaffold404 TRF Tandem_Repeat 345301 345540 261 + . . scaffold1899 GLEAN mRNA 101222 101331 0.740208 - . ID=CGI_10013612; scaffold1899 TRF Tandem_Repeat 101222 101331 148 + . . scaffold1899 GLEAN mRNA 101437 101757 0.740208 - . ID=CGI_10013612; scaffold1899 TRF Tandem_Repeat 101437 101757 245 + . . scaffold1899 GLEAN mRNA 102550 103416 0.740208 - . ID=CGI_10013612; scaffold1899 TRF Tandem_Repeat 102550 103416 1484 + . . scaffold1899 GLEAN mRNA 104967 105978 0.740208 - . ID=CGI_10013612; scaffold1899 TRF Tandem_Repeat 104967 105978 758 + . . scaffold1899 GLEAN mRNA 104967 105978 0.740208 - . ID=CGI_10013612; scaffold1899 TRF Tandem_Repeat 104967 105978 838 + . . scaffold1899 GLEAN mRNA 123026 123066 0.740208 - . ID=CGI_10013612; scaffold1899 TRF Tandem_Repeat 123026 123066 73 + . . scaffold1899 GLEAN mRNA 231785 232249 0.634371 - . ID=CGI_10013614; scaffold1899 TRF Tandem_Repeat 231785 232249 528 + . . scaffold1899 GLEAN mRNA 233535 233627 0.634371 - . ID=CGI_10013614; scaffold1899 WUBlastX LINE_RTE-BovB 233535 233627 38 + . . scaffold1899 GLEAN mRNA 233632 234381 0.634371 - . ID=CGI_10013614; scaffold1899 WUBlastX LINE_RTE-BovB 233632 234381 161 + . . scaffold1899 GLEAN mRNA 260580 260627 0.999676 - . ID=CGI_10013616; scaffold1899 TRF Tandem_Repeat 260580 260627 96 + . . scaffold1899 GLEAN mRNA 259230 259328 0.999676 - . ID=CGI_10013616; scaffold1899 WUBlastX LINE_R2-Hero 259230 259328 24 - . . scaffold1899 GLEAN mRNA 257135 258826 0.999676 - . ID=CGI_10013616; scaffold1899 WUBlastX LINE_R2-Hero 257135 258826 628 - . . scaffold1899 GLEAN mRNA 260580 260627 0.435071 + . ID=CGI_10013617; scaffold1899 TRF Tandem_Repeat 260580 260627 96 + . . scaffold1899 GLEAN mRNA 259230 259328 0.435071 + . ID=CGI_10013617; scaffold1899 WUBlastX LINE_R2-Hero 259230 259328 24 - . . scaffold1899 GLEAN mRNA 257135 258826 0.435071 + . ID=CGI_10013617; scaffold1899 WUBlastX LINE_R2-Hero 257135 258826 628 - . . scaffold1899 GLEAN mRNA 283589 283916 0.999351 + . ID=CGI_10013621; scaffold1899 TRF Tandem_Repeat 283589 283916 448 + . . scaffold1899 GLEAN mRNA 301870 302076 1 - . ID=CGI_10013622; scaffold1899 TRF Tandem_Repeat 301870 302076 242 + . . scaffold1899 GLEAN mRNA 351212 351251 0.650897 - . ID=CGI_10013624; scaffold1899 TRF Tandem_Repeat 351212 351251 53 + . . scaffold1899 GLEAN mRNA 351282 352136 0.650897 - . ID=CGI_10013624; scaffold1899 TRF Tandem_Repeat 351282 352136 1214 + . . scaffold1899 GLEAN mRNA 344019 344080 0.650897 - . ID=CGI_10013624; scaffold1899 TRF Tandem_Repeat 344019 344080 70 + . . scaffold771 GLEAN mRNA 17129 17863 0.185068 + . ID=CGI_10013628; scaffold771 TRF Tandem_Repeat 16984 17863 733 + . . scaffold771 GLEAN mRNA 17129 17902 0.185068 + . ID=CGI_10013628; scaffold771 TRF Tandem_Repeat 16984 17902 822 + . . scaffold771 GLEAN mRNA 24110 25602 0.185068 + . ID=CGI_10013628; scaffold771 TRF Tandem_Repeat 24110 25602 1735 + . . scaffold771 GLEAN mRNA 24110 25602 0.185068 + . ID=CGI_10013628; scaffold771 TRF Tandem_Repeat 24110 25602 2095 + . . scaffold771 GLEAN mRNA 24110 25602 0.185068 + . ID=CGI_10013628; scaffold771 TRF Tandem_Repeat 24110 25602 2093 + . . scaffold771 GLEAN mRNA 28911 29644 1 - . ID=CGI_10013630; scaffold771 TRF Tandem_Repeat 28911 29644 806 + . . scaffold771 GLEAN mRNA 28911 29561 1 - . ID=CGI_10013630; scaffold771 TRF Tandem_Repeat 28911 29561 795 + . . scaffold771 GLEAN mRNA 28911 29561 1 - . ID=CGI_10013630; scaffold771 TRF Tandem_Repeat 28911 29561 770 + . . scaffold771 GLEAN mRNA 28927 29552 1 - . ID=CGI_10013630; scaffold771 TRF Tandem_Repeat 28927 29552 563 + . . scaffold771 GLEAN mRNA 34324 34374 1 - . ID=CGI_10013630; scaffold771 TRF Tandem_Repeat 34324 34374 102 + . . scaffold771 GLEAN mRNA 38781 39058 1 - . ID=CGI_10013631; scaffold771 TRF Tandem_Repeat 38781 39058 412 + . . scaffold771 GLEAN mRNA 70804 71060 0.914395 + . ID=CGI_10013633; scaffold771 TRF Tandem_Repeat 70804 71060 363 + . . scaffold771 GLEAN mRNA 65422 65919 0.914395 + . ID=CGI_10013633; scaffold771 TRF Tandem_Repeat 65422 65919 442 + . . scaffold771 GLEAN mRNA 79352 79481 0.909222 - . ID=CGI_10013635; scaffold771 TRF Tandem_Repeat 79352 79481 242 + . . scaffold771 GLEAN mRNA 87832 88298 0.909222 - . ID=CGI_10013635; scaffold771 TRF Tandem_Repeat 87832 88298 581 + . . scaffold771 GLEAN mRNA 92556 92712 0.909222 - . ID=CGI_10013635; scaffold771 TRF Tandem_Repeat 92556 92712 100 + . . scaffold771 GLEAN mRNA 92460 92790 0.909222 - . ID=CGI_10013635; scaffold771 TRF Tandem_Repeat 92460 92790 372 + . . scaffold771 GLEAN mRNA 92547 92754 0.909222 - . ID=CGI_10013635; scaffold771 TRF Tandem_Repeat 92547 92754 116 + . . scaffold771 GLEAN mRNA 103928 104416 0.909222 - . ID=CGI_10013635; scaffold771 TRF Tandem_Repeat 103928 104416 831 + . . scaffold771 GLEAN mRNA 106355 106577 0.909222 - . ID=CGI_10013635; scaffold771 TRF Tandem_Repeat 106355 106577 259 + . . scaffold771 GLEAN mRNA 106347 106572 0.909222 - . ID=CGI_10013635; scaffold771 TRF Tandem_Repeat 106347 106572 292 + . . scaffold771 GLEAN mRNA 106759 107374 0.909222 - . ID=CGI_10013635; scaffold771 TRF Tandem_Repeat 106759 107374 928 + . . scaffold771 GLEAN mRNA 145459 145498 0.91116 - . ID=CGI_10013639; scaffold771 TRF Tandem_Repeat 145459 145498 53 + . . scaffold771 GLEAN mRNA 145462 145498 0.91116 - . ID=CGI_10013639; scaffold771 TRF Tandem_Repeat 145462 145498 65 + . . scaffold771 GLEAN mRNA 152347 153595 0.91116 - . ID=CGI_10013639; scaffold771 TRF Tandem_Repeat 152347 153595 1243 + . . scaffold771 GLEAN mRNA 152347 153595 0.91116 - . ID=CGI_10013639; scaffold771 TRF Tandem_Repeat 152347 153595 1387 + . . scaffold771 GLEAN mRNA 174235 174278 0.999358 + . ID=CGI_10013640; scaffold771 TRF Tandem_Repeat 174235 174278 79 + . . scaffold771 GLEAN mRNA 270694 270931 1 - . ID=CGI_10013642; scaffold771 TRF Tandem_Repeat 270694 270931 199 + . . scaffold771 GLEAN mRNA 281609 282873 0.972969 + . ID=CGI_10013643; scaffold771 TRF Tandem_Repeat 281609 282873 1827 + . . scaffold771 GLEAN mRNA 285748 285886 0.972969 + . ID=CGI_10013643; scaffold771 TRF Tandem_Repeat 285748 285886 260 + . . scaffold771 GLEAN mRNA 299675 299707 0.643655 - . ID=CGI_10013645; scaffold771 TRF Tandem_Repeat 299675 299707 66 + . . scaffold771 GLEAN mRNA 300679 300712 0.643655 - . ID=CGI_10013645; scaffold771 TRF Tandem_Repeat 300679 300712 68 + . . scaffold771 GLEAN mRNA 300844 301176 0.643655 - . ID=CGI_10013645; scaffold771 TRF Tandem_Repeat 300844 301176 537 + . . scaffold43868 GLEAN mRNA 14158 14343 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 14158 14343 121 + . . scaffold43868 GLEAN mRNA 14621 15031 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 14621 15031 109 + . . scaffold43868 GLEAN mRNA 15414 15590 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 15414 15590 100 + . . scaffold43868 GLEAN mRNA 15843 16211 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 15843 16211 283 + . . scaffold43868 GLEAN mRNA 16847 17023 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 16847 17023 150 + . . scaffold43868 GLEAN mRNA 16516 16734 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 16516 16734 93 + . . scaffold43868 GLEAN mRNA 16516 16689 0.993028 - . ID=CGI_10013648; scaffold43868 WUBlastX DNA_hAT 16516 16689 103 + . . scaffold43868 GLEAN mRNA 14158 14343 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 14158 14343 121 + . . scaffold43868 GLEAN mRNA 14621 15031 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 14621 15031 109 + . . scaffold43868 GLEAN mRNA 15414 15590 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 15414 15590 100 + . . scaffold43868 GLEAN mRNA 15843 16211 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 15843 16211 283 + . . scaffold43868 GLEAN mRNA 16847 17023 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 16847 17023 150 + . . scaffold43868 GLEAN mRNA 16516 16734 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 16516 16734 93 + . . scaffold43868 GLEAN mRNA 16516 16689 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 16516 16689 103 + . . scaffold43868 GLEAN mRNA 24038 24074 0.999676 - . ID=CGI_10013650; scaffold43868 TRF Tandem_Repeat 24038 24074 74 + . . scaffold43868 GLEAN mRNA 105664 105701 0.999949 + . ID=CGI_10013653; scaffold43868 TRF Tandem_Repeat 105664 105701 67 + . . scaffold43868 GLEAN mRNA 106575 106608 0.999949 + . ID=CGI_10013653; scaffold43868 TRF Tandem_Repeat 106575 106608 68 + . . scaffold43868 GLEAN mRNA 146630 146682 0.937811 - . ID=CGI_10013655; scaffold43868 TRF Tandem_Repeat 146630 146682 52 + . . scaffold43868 GLEAN mRNA 235125 235189 0.495497 + . ID=CGI_10013661; scaffold43868 TRF Tandem_Repeat 235125 235189 121 + . . scaffold43868 GLEAN mRNA 256515 256562 0.499945 + . ID=CGI_10013662; scaffold43868 TRF Tandem_Repeat 256515 256562 96 + . . scaffold43868 GLEAN mRNA 257991 258051 0.499945 + . ID=CGI_10013662; scaffold43868 TRF Tandem_Repeat 257991 258051 113 + . . scaffold43868 GLEAN mRNA 259419 259456 0.499945 + . ID=CGI_10013662; scaffold43868 TRF Tandem_Repeat 259419 259456 51 + . . scaffold43868 GLEAN mRNA 270954 270981 1 - . ID=CGI_10013665; scaffold43868 TRF Tandem_Repeat 270954 270981 56 + . . scaffold43868 GLEAN mRNA 319441 319466 0.99909 + . ID=CGI_10013668; scaffold43868 TRF Tandem_Repeat 319441 319466 52 + . . scaffold1714 GLEAN mRNA 216276 217025 1 - . ID=CGI_10013674; scaffold1714 WUBlastX DNA_IS4EU 216276 217277 457 - . . scaffold1714 GLEAN mRNA 216279 217025 1 - . ID=CGI_10013674; scaffold1714 WUBlastX DNA_IS4EU 216279 217037 478 - . . scaffold1714 GLEAN mRNA 251551 252900 1 + . ID=CGI_10013676; scaffold1714 TRF Tandem_Repeat 251551 252900 1712 + . . scaffold1714 GLEAN mRNA 251551 252900 1 + . ID=CGI_10013676; scaffold1714 TRF Tandem_Repeat 251551 252900 1691 + . . scaffold1714 GLEAN mRNA 257350 257828 1 + . ID=CGI_10013676; scaffold1714 TRF Tandem_Repeat 257350 257828 787 + . . scaffold1714 GLEAN mRNA 257350 257828 1 + . ID=CGI_10013676; scaffold1714 TRF Tandem_Repeat 257350 257828 822 + . . scaffold1714 GLEAN mRNA 260640 260667 1 + . ID=CGI_10013676; scaffold1714 TRF Tandem_Repeat 260640 260667 56 + . . scaffold1714 GLEAN mRNA 260668 260697 1 + . ID=CGI_10013676; scaffold1714 TRF Tandem_Repeat 260668 260697 60 + . . scaffold1714 GLEAN mRNA 260873 260908 1 + . ID=CGI_10013676; scaffold1714 TRF Tandem_Repeat 260873 260908 72 + . . scaffold1714 GLEAN mRNA 265405 265480 1 + . ID=CGI_10013676; scaffold1714 TRF Tandem_Repeat 265405 265480 152 + . . scaffold1714 GLEAN mRNA 283562 283911 0.99763 + . ID=CGI_10013678; scaffold1714 TRF Tandem_Repeat 283562 283911 700 + . . scaffold1714 GLEAN mRNA 284441 285576 0.99763 + . ID=CGI_10013678; scaffold1714 TRF Tandem_Repeat 284441 285576 1687 + . . scaffold1714 GLEAN mRNA 287384 287433 0.99763 + . ID=CGI_10013678; scaffold1714 TRF Tandem_Repeat 287384 287433 100 + . . scaffold1714 GLEAN mRNA 289582 289729 0.99763 + . ID=CGI_10013678; scaffold1714 TRF Tandem_Repeat 289582 289729 188 + . . scaffold1714 GLEAN mRNA 294170 294423 0.99763 + . ID=CGI_10013678; scaffold1714 TRF Tandem_Repeat 294170 294423 147 + . . scaffold1714 GLEAN mRNA 294095 294511 0.99763 + . ID=CGI_10013678; scaffold1714 TRF Tandem_Repeat 294095 294511 304 + . . scaffold1714 GLEAN mRNA 294313 294550 0.99763 + . ID=CGI_10013678; scaffold1714 TRF Tandem_Repeat 294313 294550 148 + . . scaffold1714 GLEAN mRNA 294170 294526 0.99763 + . ID=CGI_10013678; scaffold1714 TRF Tandem_Repeat 294170 294526 378 + . . scaffold1714 GLEAN mRNA 295531 295801 0.99763 + . ID=CGI_10013678; scaffold1714 TRF Tandem_Repeat 295531 295801 398 + . . scaffold1714 GLEAN mRNA 299455 299864 0.99763 + . ID=CGI_10013678; scaffold1714 TRF Tandem_Repeat 299455 299864 650 + . . scaffold1714 GLEAN mRNA 307657 308126 0.999557 + . ID=CGI_10013680; scaffold1714 TRF Tandem_Repeat 307657 308126 609 + . . scaffold1714 GLEAN mRNA 314340 314380 0.999557 + . ID=CGI_10013680; scaffold1714 TRF Tandem_Repeat 314340 314380 82 + . . scaffold1714 GLEAN mRNA 315472 315499 0.999557 + . ID=CGI_10013680; scaffold1714 TRF Tandem_Repeat 315472 315499 56 + . . scaffold1714 GLEAN mRNA 316042 316088 0.999557 + . ID=CGI_10013680; scaffold1714 TRF Tandem_Repeat 316042 316088 85 + . . scaffold1714 GLEAN mRNA 312426 312605 0.999557 + . ID=CGI_10013680; scaffold1714 WUBlastX LINE_L2 312426 312605 37 - . . scaffold1714 GLEAN mRNA 312035 312217 0.999557 + . ID=CGI_10013680; scaffold1714 WUBlastX LINE_L2 312035 312217 113 - . . scaffold1714 GLEAN mRNA 312214 312456 0.999557 + . ID=CGI_10013680; scaffold1714 WUBlastX LINE_L2 312214 312456 116 - . . scaffold1714 GLEAN mRNA 311883 312014 0.999557 + . ID=CGI_10013680; scaffold1714 WUBlastX LINE_L2 311883 312014 65 - . . scaffold1714 GLEAN mRNA 311877 312044 0.999557 + . ID=CGI_10013680; scaffold1714 WUBlastX LINE_CR1 311877 312044 43 - . . scaffold1714 GLEAN mRNA 312465 312635 0.999557 + . ID=CGI_10013680; scaffold1714 WUBlastX LINE_L2 312465 312635 20 - . . scaffold1714 GLEAN mRNA 311338 311820 0.999557 + . ID=CGI_10013680; scaffold1714 WUBlastX LINE_L2 311338 311820 183 - . . scaffold1714 GLEAN mRNA 311581 311868 0.999557 + . ID=CGI_10013680; scaffold1714 WUBlastX LINE_I 311581 311868 65 - . . scaffold1714 GLEAN mRNA 312426 312563 0.999557 + . ID=CGI_10013680; scaffold1714 WUBlastX LINE_L2 312426 312563 51 - . . scaffold1714 GLEAN mRNA 311159 311323 0.999557 + . ID=CGI_10013680; scaffold1714 WUBlastX LINE_L2 311159 311323 31 - . . scaffold1714 GLEAN mRNA 311251 311829 0.999557 + . ID=CGI_10013680; scaffold1714 WUBlastX LINE_CR1 311251 311829 41 - . . scaffold786 GLEAN mRNA 24311 24483 0.999675 - . ID=CGI_10013691; scaffold786 TRF Tandem_Repeat 24311 24483 319 + . . scaffold786 GLEAN mRNA 24560 24730 0.999675 - . ID=CGI_10013691; scaffold786 TRF Tandem_Repeat 24560 24730 146 + . . scaffold786 GLEAN mRNA 27898 28109 0.999675 - . ID=CGI_10013691; scaffold786 TRF Tandem_Repeat 27898 28109 424 + . . scaffold786 GLEAN mRNA 62873 63345 1 + . ID=CGI_10013693; scaffold786 TRF Tandem_Repeat 62873 63345 836 + . . scaffold786 GLEAN mRNA 80516 80572 0.704928 - . ID=CGI_10013694; scaffold786 TRF Tandem_Repeat 80516 80572 105 + . . scaffold786 GLEAN mRNA 84518 84822 0.704928 - . ID=CGI_10013694; scaffold786 TRF Tandem_Repeat 84518 84822 537 + . . scaffold786 GLEAN mRNA 86878 86999 0.704928 - . ID=CGI_10013694; scaffold786 TRF Tandem_Repeat 86878 86999 199 + . . scaffold786 GLEAN mRNA 90287 90507 0.704928 - . ID=CGI_10013694; scaffold786 TRF Tandem_Repeat 90287 90507 240 + . . scaffold786 GLEAN mRNA 91226 91276 0.704928 - . ID=CGI_10013694; scaffold786 TRF Tandem_Repeat 91226 91276 102 + . . scaffold786 GLEAN mRNA 91274 91316 0.704928 - . ID=CGI_10013694; scaffold786 TRF Tandem_Repeat 91274 91316 86 + . . scaffold786 GLEAN mRNA 92802 92828 0.704928 - . ID=CGI_10013694; scaffold786 TRF Tandem_Repeat 92802 92828 54 + . . scaffold786 GLEAN mRNA 92922 92988 0.704928 - . ID=CGI_10013694; scaffold786 TRF Tandem_Repeat 92922 92988 134 + . . scaffold786 GLEAN mRNA 99635 100745 0.704928 - . ID=CGI_10013694; scaffold786 TRF Tandem_Repeat 99635 100745 1460 + . . scaffold786 GLEAN mRNA 102201 103092 0.704928 - . ID=CGI_10013694; scaffold786 TRF Tandem_Repeat 102201 103092 464 + . . scaffold786 GLEAN mRNA 102219 103095 0.704928 - . ID=CGI_10013694; scaffold786 TRF Tandem_Repeat 102219 103095 708 + . . scaffold786 GLEAN mRNA 102219 103095 0.704928 - . ID=CGI_10013694; scaffold786 TRF Tandem_Repeat 102219 103095 733 + . . scaffold786 GLEAN mRNA 103326 103701 0.704928 - . ID=CGI_10013694; scaffold786 TRF Tandem_Repeat 103326 103701 736 + . . scaffold786 GLEAN mRNA 86878 86999 0.649082 + . ID=CGI_10013695; scaffold786 TRF Tandem_Repeat 86878 86999 199 + . . scaffold786 GLEAN mRNA 90287 90507 0.649082 + . ID=CGI_10013695; scaffold786 TRF Tandem_Repeat 90287 90507 240 + . . scaffold786 GLEAN mRNA 91226 91276 0.649082 + . ID=CGI_10013695; scaffold786 TRF Tandem_Repeat 91226 91276 102 + . . scaffold786 GLEAN mRNA 91274 91316 0.649082 + . ID=CGI_10013695; scaffold786 TRF Tandem_Repeat 91274 91316 86 + . . scaffold786 GLEAN mRNA 92802 92828 0.649082 + . ID=CGI_10013695; scaffold786 TRF Tandem_Repeat 92802 92828 54 + . . scaffold786 GLEAN mRNA 92922 92988 0.649082 + . ID=CGI_10013695; scaffold786 TRF Tandem_Repeat 92922 92988 134 + . . scaffold786 GLEAN mRNA 112997 113420 0.999878 + . ID=CGI_10013696; scaffold786 TRF Tandem_Repeat 112997 113420 338 + . . scaffold786 GLEAN mRNA 117790 118254 0.999878 + . ID=CGI_10013696; scaffold786 TRF Tandem_Repeat 117790 118254 813 + . . scaffold786 GLEAN mRNA 120091 120466 0.999878 + . ID=CGI_10013696; scaffold786 TRF Tandem_Repeat 120091 120466 608 + . . scaffold786 GLEAN mRNA 125381 126320 0.999878 + . ID=CGI_10013696; scaffold786 TRF Tandem_Repeat 125381 126320 1235 + . . scaffold786 GLEAN mRNA 120091 120466 1 - . ID=CGI_10013697; scaffold786 TRF Tandem_Repeat 120091 120466 608 + . . scaffold786 GLEAN mRNA 137879 138209 0.969127 + . ID=CGI_10013699; scaffold786 TRF Tandem_Repeat 137879 138209 361 + . . scaffold786 GLEAN mRNA 157708 157866 0.383065 + . ID=CGI_10013700; scaffold786 TRF Tandem_Repeat 157708 157866 248 + . . scaffold786 GLEAN mRNA 158558 158588 0.383065 + . ID=CGI_10013700; scaffold786 TRF Tandem_Repeat 158558 158588 55 + . . scaffold786 GLEAN mRNA 159143 159173 0.383065 + . ID=CGI_10013700; scaffold786 TRF Tandem_Repeat 159143 159173 53 + . . scaffold786 GLEAN mRNA 159220 159258 0.383065 + . ID=CGI_10013700; scaffold786 TRF Tandem_Repeat 159220 159258 78 + . . scaffold786 GLEAN mRNA 164360 164384 0.383065 + . ID=CGI_10013700; scaffold786 TRF Tandem_Repeat 164360 164384 50 + . . scaffold786 GLEAN mRNA 164646 164683 0.383065 + . ID=CGI_10013700; scaffold786 TRF Tandem_Repeat 164646 164683 76 + . . scaffold786 GLEAN mRNA 166234 166272 0.383065 + . ID=CGI_10013700; scaffold786 TRF Tandem_Repeat 166234 166272 69 + . . scaffold786 GLEAN mRNA 172123 172285 0.383065 + . ID=CGI_10013700; scaffold786 TRF Tandem_Repeat 172123 172285 290 + . . scaffold786 GLEAN mRNA 247146 248298 0.993907 - . ID=CGI_10013704; scaffold786 TRF Tandem_Repeat 247146 248298 1150 + . . scaffold786 GLEAN mRNA 261775 261851 0.993907 - . ID=CGI_10013704; scaffold786 TRF Tandem_Repeat 261775 261851 138 + . . scaffold786 GLEAN mRNA 265053 265097 0.993907 - . ID=CGI_10013704; scaffold786 TRF Tandem_Repeat 265053 265097 90 + . . scaffold786 GLEAN mRNA 269485 269641 0.985899 + . ID=CGI_10013705; scaffold786 TRF Tandem_Repeat 269485 269641 157 + . . scaffold786 GLEAN mRNA 274609 274641 0.985899 + . ID=CGI_10013705; scaffold786 TRF Tandem_Repeat 274609 274641 57 + . . scaffold786 GLEAN mRNA 276574 276716 0.985899 + . ID=CGI_10013705; scaffold786 TRF Tandem_Repeat 276574 276716 214 + . . scaffold786 GLEAN mRNA 276899 276923 0.985899 + . ID=CGI_10013705; scaffold786 TRF Tandem_Repeat 276899 277094 276 + . . scaffold786 GLEAN mRNA 272521 272805 0.985899 + . ID=CGI_10013705; scaffold786 WUBlastX LINE_RTE-X 272521 272805 100 - . . scaffold786 GLEAN mRNA 272404 272817 0.985899 + . ID=CGI_10013705; scaffold786 WUBlastX LINE_RTE-X 272404 272817 77 - . . scaffold786 GLEAN mRNA 302205 302231 0.997099 - . ID=CGI_10013707; scaffold786 TRF Tandem_Repeat 302205 302231 54 + . . scaffold786 GLEAN mRNA 346474 346827 1 + . ID=CGI_10013708; scaffold786 WUBlastX LINE_L1-Tx1 346474 346827 28 + . . scaffold786 GLEAN mRNA 347157 347351 1 + . ID=CGI_10013708; scaffold786 WUBlastX LINE_L1-Tx1 347157 347351 50 + . . scaffold786 GLEAN mRNA 346471 346725 1 + . ID=CGI_10013708; scaffold786 WUBlastX LINE_L1-Tx1 346471 346725 50 + . . scaffold786 GLEAN mRNA 344133 344405 1 + . ID=CGI_10013708; scaffold786 WUBlastX DNA_IS4EU 344133 344405 105 + . . scaffold786 GLEAN mRNA 346234 346623 1 + . ID=CGI_10013708; scaffold786 WUBlastX LINE_L1-Tx1 346234 346623 55 + . . scaffold786 GLEAN mRNA 360890 361037 0.5 - . ID=CGI_10013709; scaffold786 TRF Tandem_Repeat 360890 361037 179 + . . scaffold786 GLEAN mRNA 361187 361274 0.5 - . ID=CGI_10013709; scaffold786 TRF Tandem_Repeat 361187 361274 59 + . . scaffold786 GLEAN mRNA 364848 365168 0.5 - . ID=CGI_10013709; scaffold786 WUBlastX DNA_TcMar-Marin 364848 365168 94 + . . scaffold786 GLEAN mRNA 364475 364915 0.5 - . ID=CGI_10013709; scaffold786 WUBlastX DNA_TcMar-Marin 364475 364915 137 + . . scaffold43878 GLEAN mRNA 25651 25877 0.131804 - . ID=CGI_10013710; scaffold43878 TRF Tandem_Repeat 25651 25877 96 + . . scaffold43878 GLEAN mRNA 25962 26069 0.131804 - . ID=CGI_10013710; scaffold43878 TRF Tandem_Repeat 25962 26069 55 + . . scaffold43878 GLEAN mRNA 41142 41246 0.131804 - . ID=CGI_10013710; scaffold43878 TRF Tandem_Repeat 41142 41246 174 + . . scaffold43878 GLEAN mRNA 34233 34763 0.131804 - . ID=CGI_10013710; scaffold43878 WUBlastX LINE_L1-Tx1 34233 34763 137 - . . scaffold43878 GLEAN mRNA 33757 33948 0.131804 - . ID=CGI_10013710; scaffold43878 WUBlastX LINE_L1-Tx1 33757 33948 24 - . . scaffold43878 GLEAN mRNA 64474 64704 0.999414 + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 64474 64704 39 + . . scaffold43878 GLEAN mRNA 63246 63506 0.999414 + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 63192 63506 111 + . . scaffold43878 GLEAN mRNA 63994 64176 0.999414 + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 63994 64176 60 + . . scaffold43878 GLEAN mRNA 63246 63518 0.999414 + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 63243 63518 150 + . . scaffold43878 GLEAN mRNA 63635 63904 0.999414 + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 63635 63904 60 + . . scaffold43878 GLEAN mRNA 64264 64476 0.999414 + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 64264 64476 27 + . . scaffold43878 GLEAN mRNA 84100 84165 0.99935 - . ID=CGI_10013714; scaffold43878 TRF Tandem_Repeat 84100 84165 87 + . . scaffold43878 GLEAN mRNA 159839 160090 0.593391 + . ID=CGI_10013720; scaffold43878 WUBlastX RC_Helitron 159839 160090 51 + . . scaffold43878 GLEAN mRNA 161026 161112 0.593391 + . ID=CGI_10013720; scaffold43878 WUBlastX RC_Helitron 161026 161112 28 + . . scaffold43878 GLEAN mRNA 237916 238007 0.633245 - . ID=CGI_10013724; scaffold43878 TRF Tandem_Repeat 237916 238007 107 + . . scaffold43878 GLEAN mRNA 238087 238222 0.633245 - . ID=CGI_10013724; scaffold43878 TRF Tandem_Repeat 238087 238222 112 + . . scaffold43878 GLEAN mRNA 238294 238400 0.633245 - . ID=CGI_10013724; scaffold43878 TRF Tandem_Repeat 238294 238400 117 + . . scaffold43878 GLEAN mRNA 238492 238585 0.633245 - . ID=CGI_10013724; scaffold43878 TRF Tandem_Repeat 238492 238585 59 + . . scaffold43878 GLEAN mRNA 281073 281120 0.999995 - . ID=CGI_10013726; scaffold43878 TRF Tandem_Repeat 281073 281120 96 + . . scaffold43878 GLEAN mRNA 335041 335377 0.966874 + . ID=CGI_10013732; scaffold43878 TRF Tandem_Repeat 335041 335377 570 + . . scaffold43878 GLEAN mRNA 335041 335377 0.966874 + . ID=CGI_10013732; scaffold43878 TRF Tandem_Repeat 335041 335377 570 + . . scaffold43878 GLEAN mRNA 336113 336147 0.966874 + . ID=CGI_10013732; scaffold43878 TRF Tandem_Repeat 336113 336147 70 + . . scaffold43878 GLEAN mRNA 351489 351533 0.966874 + . ID=CGI_10013732; scaffold43878 TRF Tandem_Repeat 351489 351533 72 + . . scaffold43878 GLEAN mRNA 351489 351536 0.966874 + . ID=CGI_10013732; scaffold43878 TRF Tandem_Repeat 351489 351536 51 + . . scaffold581 GLEAN mRNA 16973 17029 0.999834 - . ID=CGI_10013733; scaffold581 TRF Tandem_Repeat 16973 17029 98 + . . scaffold581 GLEAN mRNA 19760 19876 0.999834 - . ID=CGI_10013733; scaffold581 WUBlastX LINE_L1-Tx1 19760 19876 26 + . . scaffold581 GLEAN mRNA 17253 17987 0.999834 - . ID=CGI_10013733; scaffold581 WUBlastX LINE_L1-Tx1 17253 17987 177 + . . scaffold581 GLEAN mRNA 18255 18542 0.999834 - . ID=CGI_10013733; scaffold581 WUBlastX LINE_L1-Tx1 18255 18542 279 + . . scaffold581 GLEAN mRNA 18539 19306 0.999834 - . ID=CGI_10013733; scaffold581 WUBlastX LINE_L1-Tx1 18539 19306 267 + . . scaffold581 GLEAN mRNA 17989 18255 0.999834 - . ID=CGI_10013733; scaffold581 WUBlastX LINE_L1-Tx1 17989 18255 69 + . . scaffold581 GLEAN mRNA 20086 20187 0.999834 - . ID=CGI_10013733; scaffold581 WUBlastX LINE_L1-Tx1 20086 20187 32 + . . scaffold581 GLEAN mRNA 45225 45272 0.69862 - . ID=CGI_10013734; scaffold581 TRF Tandem_Repeat 45225 45272 51 + . . scaffold581 GLEAN mRNA 45230 45280 0.69862 - . ID=CGI_10013734; scaffold581 TRF Tandem_Repeat 45230 45280 57 + . . scaffold581 GLEAN mRNA 61475 61559 0.322311 - . ID=CGI_10013736; scaffold581 TRF Tandem_Repeat 61475 61559 154 + . . scaffold581 GLEAN mRNA 62889 62931 0.322311 - . ID=CGI_10013736; scaffold581 TRF Tandem_Repeat 62889 62931 86 + . . scaffold581 GLEAN mRNA 69618 69643 0.322311 - . ID=CGI_10013736; scaffold581 TRF Tandem_Repeat 69618 69643 52 + . . scaffold581 GLEAN mRNA 188844 189065 0.517038 - . ID=CGI_10013740; scaffold581 WUBlastX DNA_Sola 188844 189065 78 - . . scaffold581 GLEAN mRNA 197904 198173 0.808206 - . ID=CGI_10013741; scaffold581 WUBlastX DNA_En-Spm 197904 198173 83 - . . scaffold581 GLEAN mRNA 218379 218589 0.207483 - . ID=CGI_10013742; scaffold581 TRF Tandem_Repeat 218379 218589 129 + . . scaffold581 GLEAN mRNA 222921 222997 0.207483 - . ID=CGI_10013742; scaffold581 TRF Tandem_Repeat 222921 222997 136 + . . scaffold581 GLEAN mRNA 237283 237410 0.207483 - . ID=CGI_10013742; scaffold581 TRF Tandem_Repeat 237283 237410 121 + . . scaffold581 GLEAN mRNA 237304 237412 0.207483 - . ID=CGI_10013742; scaffold581 TRF Tandem_Repeat 237304 237412 164 + . . scaffold581 GLEAN mRNA 239010 239047 0.207483 - . ID=CGI_10013742; scaffold581 TRF Tandem_Repeat 239010 239047 76 + . . scaffold581 GLEAN mRNA 275379 275431 0.207483 - . ID=CGI_10013742; scaffold581 TRF Tandem_Repeat 275379 275431 60 + . . scaffold581 GLEAN mRNA 275382 275428 0.207483 - . ID=CGI_10013742; scaffold581 TRF Tandem_Repeat 275382 275428 53 + . . scaffold581 GLEAN mRNA 275439 275474 0.207483 - . ID=CGI_10013742; scaffold581 TRF Tandem_Repeat 275439 275474 54 + . . scaffold581 GLEAN mRNA 275490 275978 0.207483 - . ID=CGI_10013742; scaffold581 WUBlastX LINE_L1-Tx1 275490 275978 116 - . . scaffold581 GLEAN mRNA 275640 276038 0.207483 - . ID=CGI_10013742; scaffold581 WUBlastX LINE_L1-Tx1 275640 276038 42 - . . scaffold581 GLEAN mRNA 308754 309819 0.889462 + . ID=CGI_10013743; scaffold581 TRF Tandem_Repeat 308754 309819 945 + . . scaffold581 GLEAN mRNA 321209 321290 0.981175 + . ID=CGI_10013744; scaffold581 TRF Tandem_Repeat 321209 321290 155 + . . scaffold660 GLEAN mRNA 7228 7498 0.984536 + . ID=CGI_10013747; scaffold660 TRF Tandem_Repeat 7228 7498 373 + . . scaffold660 GLEAN mRNA 7871 9124 0.984536 + . ID=CGI_10013747; scaffold660 TRF Tandem_Repeat 7871 9124 1562 + . . scaffold660 GLEAN mRNA 11813 12652 0.984536 + . ID=CGI_10013747; scaffold660 TRF Tandem_Repeat 11813 12652 567 + . . scaffold660 GLEAN mRNA 11879 12651 0.984536 + . ID=CGI_10013747; scaffold660 TRF Tandem_Repeat 11879 12651 1060 + . . scaffold660 GLEAN mRNA 19663 19936 0.984536 + . ID=CGI_10013747; scaffold660 TRF Tandem_Repeat 19663 19936 395 + . . scaffold660 GLEAN mRNA 20827 20944 0.984536 + . ID=CGI_10013747; scaffold660 TRF Tandem_Repeat 20827 20944 122 + . . scaffold660 GLEAN mRNA 30733 30984 0.984536 + . ID=CGI_10013747; scaffold660 TRF Tandem_Repeat 30733 30984 362 + . . scaffold660 GLEAN mRNA 31051 31184 0.984536 + . ID=CGI_10013747; scaffold660 TRF Tandem_Repeat 31051 31184 114 + . . scaffold660 GLEAN mRNA 31041 31163 0.984536 + . ID=CGI_10013747; scaffold660 TRF Tandem_Repeat 31041 31163 120 + . . scaffold660 GLEAN mRNA 51318 52741 0.840094 - . ID=CGI_10013748; scaffold660 TRF Tandem_Repeat 51318 52741 1647 + . . scaffold660 GLEAN mRNA 51318 52741 0.840094 - . ID=CGI_10013748; scaffold660 TRF Tandem_Repeat 51318 52741 1571 + . . scaffold660 GLEAN mRNA 54530 55483 0.840094 - . ID=CGI_10013748; scaffold660 TRF Tandem_Repeat 54530 55483 1289 + . . scaffold660 GLEAN mRNA 55514 55541 0.840094 - . ID=CGI_10013748; scaffold660 TRF Tandem_Repeat 55514 55541 56 + . . scaffold660 GLEAN mRNA 88074 88133 0.840094 - . ID=CGI_10013748; scaffold660 TRF Tandem_Repeat 88074 88133 111 + . . scaffold660 GLEAN mRNA 106995 107117 0.999675 - . ID=CGI_10013750; scaffold660 WUBlastX LINE_RTE-X 106995 107117 41 + . . scaffold660 GLEAN mRNA 106971 107150 0.999675 - . ID=CGI_10013750; scaffold660 WUBlastX LINE_RTE-X 106971 107150 24 + . . scaffold660 GLEAN mRNA 98898 99359 0.999675 - . ID=CGI_10013750; scaffold660 WUBlastX LINE_L1-Tx1 98898 99359 81 - . . scaffold660 GLEAN mRNA 107646 107798 0.999675 - . ID=CGI_10013750; scaffold660 WUBlastX LINE_RTE-X 107646 107798 66 + . . scaffold660 GLEAN mRNA 107232 107825 0.999675 - . ID=CGI_10013750; scaffold660 WUBlastX LINE_RTE-X 107232 107825 30 + . . scaffold660 GLEAN mRNA 107646 107834 0.999675 - . ID=CGI_10013750; scaffold660 WUBlastX LINE_RTE-X 107646 107834 51 + . . scaffold660 GLEAN mRNA 98868 99278 0.999675 - . ID=CGI_10013750; scaffold660 WUBlastX LINE_L1-Tx1 98868 99278 108 - . . scaffold660 GLEAN mRNA 137869 137905 0.855126 - . ID=CGI_10013751; scaffold660 TRF Tandem_Repeat 137869 137905 65 + . . scaffold660 GLEAN mRNA 136827 137003 0.855126 - . ID=CGI_10013751; scaffold660 WUBlastX DNA_Crypton 136827 137003 76 + . . scaffold660 GLEAN mRNA 144782 145180 0.855126 - . ID=CGI_10013751; scaffold660 WUBlastX LINE_Penelope 144782 145180 45 + . . scaffold660 GLEAN mRNA 148779 148815 0.855126 - . ID=CGI_10013751; scaffold660 TRF Tandem_Repeat 148779 148815 74 + . . scaffold660 GLEAN mRNA 154278 154324 0.855126 - . ID=CGI_10013751; scaffold660 TRF Tandem_Repeat 154278 154324 94 + . . scaffold660 GLEAN mRNA 155829 156029 0.855126 - . ID=CGI_10013751; scaffold660 WUBlastX LINE_RTE-BovB 155829 156029 235 + . . scaffold660 GLEAN mRNA 155951 156259 0.855126 - . ID=CGI_10013751; scaffold660 WUBlastX LINE_RTE-BovB 155951 156259 240 + . . scaffold660 GLEAN mRNA 156259 156339 0.855126 - . ID=CGI_10013751; scaffold660 WUBlastX LINE_RTE-BovB 156259 156339 58 + . . scaffold660 GLEAN mRNA 156315 156758 0.855126 - . ID=CGI_10013751; scaffold660 WUBlastX LINE_RTE-BovB 156315 156758 418 + . . scaffold660 GLEAN mRNA 165321 165387 0.855126 - . ID=CGI_10013751; scaffold660 TRF Tandem_Repeat 165321 165387 89 + . . scaffold660 GLEAN mRNA 172717 172767 0.855126 - . ID=CGI_10013751; scaffold660 TRF Tandem_Repeat 172717 172767 50 + . . scaffold660 GLEAN mRNA 172729 172796 0.855126 - . ID=CGI_10013751; scaffold660 TRF Tandem_Repeat 172729 172796 57 + . . scaffold660 GLEAN mRNA 181562 181595 0.855126 - . ID=CGI_10013751; scaffold660 TRF Tandem_Repeat 181562 181595 59 + . . scaffold660 GLEAN mRNA 181656 181686 0.855126 - . ID=CGI_10013751; scaffold660 TRF Tandem_Repeat 181656 181686 62 + . . scaffold660 GLEAN mRNA 181684 181741 0.855126 - . ID=CGI_10013751; scaffold660 TRF Tandem_Repeat 181684 181741 116 + . . scaffold660 GLEAN mRNA 201670 201957 0.999661 + . ID=CGI_10013753; scaffold660 WUBlastX DNA_hAT-Tip100 201670 201957 97 + . . scaffold660 GLEAN mRNA 201727 201969 0.999661 + . ID=CGI_10013753; scaffold660 WUBlastX DNA_hAT-Tip100 201727 201969 102 + . . scaffold660 GLEAN mRNA 201436 201957 0.999661 + . ID=CGI_10013753; scaffold660 WUBlastX DNA_hAT-Tip100 201430 201957 77 + . . scaffold660 GLEAN mRNA 201436 201957 0.999661 + . ID=CGI_10013753; scaffold660 WUBlastX DNA_hAT-Tip100 201325 201957 27 + . . scaffold660 GLEAN mRNA 264970 265389 0.750852 - . ID=CGI_10013757; scaffold660 TRF Tandem_Repeat 264970 265389 283 + . . scaffold660 GLEAN mRNA 266036 266062 0.750852 - . ID=CGI_10013757; scaffold660 TRF Tandem_Repeat 266036 266062 54 + . . scaffold660 GLEAN mRNA 317794 317846 1 + . ID=CGI_10013758; scaffold660 TRF Tandem_Repeat 317794 317846 106 + . . scaffold660 GLEAN mRNA 344881 344915 1 - . ID=CGI_10013761; scaffold660 TRF Tandem_Repeat 344881 344915 63 + . . scaffold660 GLEAN mRNA 346967 347293 1 - . ID=CGI_10013761; scaffold660 TRF Tandem_Repeat 346967 347293 501 + . . scaffold510 GLEAN mRNA 29445 29492 0.641868 - . ID=CGI_10013762; scaffold510 TRF Tandem_Repeat 29445 29492 96 + . . scaffold510 GLEAN mRNA 29817 29865 0.641868 - . ID=CGI_10013762; scaffold510 TRF Tandem_Repeat 29817 29865 98 + . . scaffold510 GLEAN mRNA 64349 64379 0.286351 + . ID=CGI_10013766; scaffold510 TRF Tandem_Repeat 64349 64379 53 + . . scaffold510 GLEAN mRNA 64379 64403 0.286351 + . ID=CGI_10013766; scaffold510 TRF Tandem_Repeat 64379 64403 50 + . . scaffold510 GLEAN mRNA 71028 71065 0.286351 + . ID=CGI_10013766; scaffold510 TRF Tandem_Repeat 71028 71065 67 + . . scaffold510 GLEAN mRNA 73087 73129 0.286351 + . ID=CGI_10013766; scaffold510 TRF Tandem_Repeat 73087 73129 50 + . . scaffold510 GLEAN mRNA 76333 76378 0.286351 + . ID=CGI_10013766; scaffold510 TRF Tandem_Repeat 76333 76378 92 + . . scaffold510 GLEAN mRNA 76445 76489 0.286351 + . ID=CGI_10013766; scaffold510 TRF Tandem_Repeat 76445 76489 81 + . . scaffold510 GLEAN mRNA 77948 77991 0.286351 + . ID=CGI_10013766; scaffold510 TRF Tandem_Repeat 77948 77991 88 + . . scaffold510 GLEAN mRNA 172797 172904 0.785549 + . ID=CGI_10013769; scaffold510 TRF Tandem_Repeat 172797 172904 130 + . . scaffold510 GLEAN mRNA 169942 171501 0.785549 + . ID=CGI_10013769; scaffold510 WUBlastX LTR_Ngaro 169942 171501 981 - . . scaffold510 GLEAN mRNA 171524 172513 0.785549 + . ID=CGI_10013769; scaffold510 WUBlastX LTR_Ngaro 171524 172513 124 - . . scaffold510 GLEAN mRNA 169019 169984 0.785549 + . ID=CGI_10013769; scaffold510 WUBlastX LTR_Ngaro 169019 169984 291 - . . scaffold510 GLEAN mRNA 272658 272858 0.650871 + . ID=CGI_10013771; scaffold510 WUBlastX DNA_IS4EU 272658 272858 74 + . . scaffold510 GLEAN mRNA 329184 329211 1 - . ID=CGI_10013772; scaffold510 TRF Tandem_Repeat 329184 329211 56 + . . scaffold510 GLEAN mRNA 355060 355503 0.999948 - . ID=CGI_10013775; scaffold510 WUBlastX LTR_DIRS 355060 355503 170 - . . scaffold510 GLEAN mRNA 354817 355011 0.999948 - . ID=CGI_10013775; scaffold510 WUBlastX LTR_DIRS 354817 355011 127 - . . scaffold1409 GLEAN mRNA 22600 22634 1 - . ID=CGI_10013780; scaffold1409 TRF Tandem_Repeat 22600 22634 70 + . . scaffold1409 GLEAN mRNA 56248 56443 0.806318 + . ID=CGI_10013781; scaffold1409 TRF Tandem_Repeat 56248 56443 171 + . . scaffold1409 GLEAN mRNA 61169 61217 0.806318 + . ID=CGI_10013781; scaffold1409 TRF Tandem_Repeat 61169 61217 98 + . . scaffold1409 GLEAN mRNA 134042 134097 0.210676 - . ID=CGI_10013783; scaffold1409 TRF Tandem_Repeat 134042 134097 103 + . . scaffold1409 GLEAN mRNA 142445 142490 0.210676 - . ID=CGI_10013783; scaffold1409 TRF Tandem_Repeat 142445 142490 74 + . . scaffold1409 GLEAN mRNA 146004 146036 0.210676 - . ID=CGI_10013783; scaffold1409 TRF Tandem_Repeat 146004 146036 66 + . . scaffold1409 GLEAN mRNA 137952 139016 0.210676 - . ID=CGI_10013783; scaffold1409 WUBlastX LINE_RTE-BovB 137952 139016 1288 - . . scaffold1409 GLEAN mRNA 139016 140464 0.210676 - . ID=CGI_10013783; scaffold1409 WUBlastX LINE_RTE-BovB 139016 140464 1949 - . . scaffold1409 GLEAN mRNA 140466 140522 0.210676 - . ID=CGI_10013783; scaffold1409 WUBlastX LINE_RTE-BovB 140466 140522 41 - . . scaffold1409 GLEAN mRNA 225948 226026 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 225948 226026 113 + . . scaffold1409 GLEAN mRNA 225948 226026 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 225948 226026 113 + . . scaffold1409 GLEAN mRNA 226278 226328 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 226278 226328 102 + . . scaffold1409 GLEAN mRNA 227667 227954 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 227667 227954 325 + . . scaffold1409 GLEAN mRNA 228790 229254 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 228790 229254 743 + . . scaffold1409 GLEAN mRNA 230142 230177 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 230142 230177 72 + . . scaffold1409 GLEAN mRNA 232129 232379 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 232129 232379 294 + . . scaffold1409 GLEAN mRNA 236400 236450 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 236400 236450 50 + . . scaffold1409 GLEAN mRNA 240301 240356 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 240301 240356 66 + . . scaffold1409 GLEAN mRNA 240304 240352 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 240304 240352 57 + . . scaffold1409 GLEAN mRNA 240301 240358 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 240301 240358 107 + . . scaffold1409 GLEAN mRNA 247204 247374 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 247204 247374 333 + . . scaffold1409 GLEAN mRNA 247966 248012 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 247966 248012 94 + . . scaffold1409 GLEAN mRNA 256044 256964 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 256044 256964 1119 + . . scaffold1409 GLEAN mRNA 257765 258005 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 257765 258005 328 + . . scaffold1409 GLEAN mRNA 265186 266344 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 265186 266344 1188 + . . scaffold1409 GLEAN mRNA 269811 269926 0.678941 + . ID=CGI_10013786; scaffold1409 TRF Tandem_Repeat 269811 269926 94 + . . scaffold1409 GLEAN mRNA 272484 272545 0.678941 + . ID=CGI_10013786; scaffold1409 TRF Tandem_Repeat 272484 272545 115 + . . scaffold1409 GLEAN mRNA 273645 274215 0.678941 + . ID=CGI_10013786; scaffold1409 TRF Tandem_Repeat 273645 274215 758 + . . scaffold1409 GLEAN mRNA 307498 307539 0.997974 + . ID=CGI_10013789; scaffold1409 TRF Tandem_Repeat 307498 307539 75 + . . scaffold1409 GLEAN mRNA 307613 307679 0.997974 + . ID=CGI_10013789; scaffold1409 TRF Tandem_Repeat 307613 307679 127 + . . scaffold1409 GLEAN mRNA 329798 329865 0.918932 - . ID=CGI_10013791; scaffold1409 TRF Tandem_Repeat 329798 329865 118 + . . scaffold1409 GLEAN mRNA 329900 331023 0.918932 - . ID=CGI_10013791; scaffold1409 TRF Tandem_Repeat 329900 331023 1589 + . . scaffold1409 GLEAN mRNA 334440 335580 0.918932 - . ID=CGI_10013791; scaffold1409 TRF Tandem_Repeat 334440 335580 1620 + . . scaffold1409 GLEAN mRNA 340029 340418 0.918932 - . ID=CGI_10013791; scaffold1409 TRF Tandem_Repeat 340029 340418 690 + . . scaffold1409 GLEAN mRNA 337570 337902 0.918932 - . ID=CGI_10013791; scaffold1409 WUBlastX LINE_L2 337570 337902 70 - . . scaffold1409 GLEAN mRNA 336901 337482 0.918932 - . ID=CGI_10013791; scaffold1409 WUBlastX LINE_L1-Tx1 336901 337482 29 - . . scaffold1409 GLEAN mRNA 350031 350676 0.918932 - . ID=CGI_10013791; scaffold1409 TRF Tandem_Repeat 350031 350676 349 + . . scaffold1409 GLEAN mRNA 329798 329865 0.994281 + . ID=CGI_10013793; scaffold1409 TRF Tandem_Repeat 329798 329865 118 + . . scaffold1409 GLEAN mRNA 329900 331023 0.994281 + . ID=CGI_10013793; scaffold1409 TRF Tandem_Repeat 329900 331023 1589 + . . scaffold1409 GLEAN mRNA 334440 335580 0.994281 + . ID=CGI_10013793; scaffold1409 TRF Tandem_Repeat 334440 335580 1620 + . . scaffold1409 GLEAN mRNA 337570 337902 0.994281 + . ID=CGI_10013793; scaffold1409 WUBlastX LINE_L2 337570 337902 70 - . . scaffold1409 GLEAN mRNA 336901 337482 0.994281 + . ID=CGI_10013793; scaffold1409 WUBlastX LINE_L1-Tx1 336901 337482 29 - . . scaffold1409 GLEAN mRNA 356715 356740 0.999654 - . ID=CGI_10013794; scaffold1409 TRF Tandem_Repeat 356715 356740 52 + . . scaffold1827 GLEAN mRNA 110545 110580 0.99219 + . ID=CGI_10013799; scaffold1827 TRF Tandem_Repeat 110545 110580 72 + . . scaffold1827 GLEAN mRNA 123462 123506 0.997256 + . ID=CGI_10013800; scaffold1827 TRF Tandem_Repeat 123462 123506 90 + . . scaffold1827 GLEAN mRNA 129740 129822 0.997256 + . ID=CGI_10013800; scaffold1827 TRF Tandem_Repeat 129740 129822 150 + . . scaffold1827 GLEAN mRNA 129820 129847 0.997256 + . ID=CGI_10013800; scaffold1827 TRF Tandem_Repeat 129820 129847 56 + . . scaffold1827 GLEAN mRNA 130092 130118 0.997256 + . ID=CGI_10013800; scaffold1827 TRF Tandem_Repeat 130092 130118 54 + . . scaffold1827 GLEAN mRNA 200320 200983 0.740724 - . ID=CGI_10013803; scaffold1827 TRF Tandem_Repeat 200320 200983 694 + . . scaffold1827 GLEAN mRNA 200973 201276 0.740724 - . ID=CGI_10013803; scaffold1827 TRF Tandem_Repeat 200973 201276 139 + . . scaffold1827 GLEAN mRNA 202858 203293 0.740724 - . ID=CGI_10013803; scaffold1827 TRF Tandem_Repeat 202858 203293 436 + . . scaffold1827 GLEAN mRNA 272470 272655 0.586982 - . ID=CGI_10013805; scaffold1827 TRF Tandem_Repeat 272470 272655 302 + . . scaffold1827 GLEAN mRNA 281111 281380 0.586982 - . ID=CGI_10013805; scaffold1827 TRF Tandem_Repeat 281111 281380 348 + . . scaffold1827 GLEAN mRNA 295901 296244 0.998826 - . ID=CGI_10013807; scaffold1827 TRF Tandem_Repeat 295901 296244 419 + . . scaffold1827 GLEAN mRNA 301033 302966 0.449006 + . ID=CGI_10013808; scaffold1827 TRF Tandem_Repeat 301033 302966 2562 + . . scaffold1827 GLEAN mRNA 323067 323093 0.394933 - . ID=CGI_10013809; scaffold1827 TRF Tandem_Repeat 323067 323093 54 + . . scaffold1827 GLEAN mRNA 330123 330176 0.394933 - . ID=CGI_10013809; scaffold1827 TRF Tandem_Repeat 330123 330176 99 + . . scaffold1827 GLEAN mRNA 331735 331812 0.394933 - . ID=CGI_10013809; scaffold1827 TRF Tandem_Repeat 331735 331812 147 + . . scaffold1827 GLEAN mRNA 340967 341509 0.394933 - . ID=CGI_10013809; scaffold1827 WUBlastX LTR_Copia 340967 341509 27 - . . scaffold1827 GLEAN mRNA 345269 345902 0.394933 - . ID=CGI_10013809; scaffold1827 TRF Tandem_Repeat 345269 345902 1079 + . . scaffold1827 GLEAN mRNA 348737 349001 0.394933 - . ID=CGI_10013809; scaffold1827 TRF Tandem_Repeat 348737 349001 206 + . . scaffold1447 GLEAN mRNA 22426 22456 0.469757 + . ID=CGI_10013812; scaffold1447 TRF Tandem_Repeat 22426 22456 62 + . . scaffold1447 GLEAN mRNA 24268 24346 0.469757 + . ID=CGI_10013812; scaffold1447 TRF Tandem_Repeat 24268 24346 131 + . . scaffold1447 GLEAN mRNA 27395 27436 0.469757 + . ID=CGI_10013812; scaffold1447 TRF Tandem_Repeat 27395 27436 50 + . . scaffold1447 GLEAN mRNA 37139 37188 0.469757 + . ID=CGI_10013812; scaffold1447 TRF Tandem_Repeat 37139 37188 100 + . . scaffold1447 GLEAN mRNA 37916 37990 0.469757 + . ID=CGI_10013812; scaffold1447 TRF Tandem_Repeat 37916 37990 55 + . . scaffold1447 GLEAN mRNA 39095 39129 0.469757 + . ID=CGI_10013812; scaffold1447 TRF Tandem_Repeat 39095 39129 70 + . . scaffold1447 GLEAN mRNA 39241 39308 0.469757 + . ID=CGI_10013812; scaffold1447 TRF Tandem_Repeat 39241 39308 136 + . . scaffold1447 GLEAN mRNA 39704 39771 0.469757 + . ID=CGI_10013812; scaffold1447 TRF Tandem_Repeat 39704 39771 136 + . . scaffold1447 GLEAN mRNA 39940 39979 0.469757 + . ID=CGI_10013812; scaffold1447 TRF Tandem_Repeat 39940 39979 64 + . . scaffold1447 GLEAN mRNA 40587 40764 0.469757 + . ID=CGI_10013812; scaffold1447 TRF Tandem_Repeat 40587 40764 73 + . . scaffold1447 GLEAN mRNA 44452 44580 0.469757 + . ID=CGI_10013812; scaffold1447 TRF Tandem_Repeat 44452 44580 63 + . . scaffold1447 GLEAN mRNA 48875 49267 0.469757 + . ID=CGI_10013812; scaffold1447 WUBlastX LINE_Penelope 48875 49267 64 - . . scaffold1447 GLEAN mRNA 102515 102572 0.92535 - . ID=CGI_10013817; scaffold1447 TRF Tandem_Repeat 102515 102572 66 + . . scaffold1447 GLEAN mRNA 99729 100286 0.92535 - . ID=CGI_10013817; scaffold1447 WUBlastX DNA_TcMar-Tc1 99729 100286 300 - . . scaffold1447 GLEAN mRNA 100285 100683 0.92535 - . ID=CGI_10013817; scaffold1447 WUBlastX DNA_TcMar-Tc1 100285 100683 42 - . . scaffold1447 GLEAN mRNA 153109 153432 0.838589 - . ID=CGI_10013818; scaffold1447 WUBlastX DNA_TcMar-Tc1 153109 153432 93 - . . scaffold1447 GLEAN mRNA 153118 153276 0.838589 - . ID=CGI_10013818; scaffold1447 WUBlastX DNA_TcMar-Tc1 153118 153276 100 - . . scaffold1447 GLEAN mRNA 149743 150027 0.838589 - . ID=CGI_10013818; scaffold1447 WUBlastX LINE_RTE-X 149743 150027 115 - . . scaffold1447 GLEAN mRNA 152966 153091 0.838589 - . ID=CGI_10013818; scaffold1447 WUBlastX DNA_TcMar-Tc1 152966 153091 63 - . . scaffold1447 GLEAN mRNA 149647 150003 0.838589 - . ID=CGI_10013818; scaffold1447 WUBlastX LINE_RTE-X 149647 150003 32 - . . scaffold1447 GLEAN mRNA 170572 170768 0.999674 + . ID=CGI_10013820; scaffold1447 TRF Tandem_Repeat 170572 170768 155 + . . scaffold1447 GLEAN mRNA 172875 172907 0.999674 + . ID=CGI_10013820; scaffold1447 TRF Tandem_Repeat 172875 172907 66 + . . scaffold1447 GLEAN mRNA 175280 175341 0.999674 + . ID=CGI_10013820; scaffold1447 TRF Tandem_Repeat 175280 175341 83 + . . scaffold1447 GLEAN mRNA 175387 176172 0.999674 + . ID=CGI_10013820; scaffold1447 TRF Tandem_Repeat 175387 176172 908 + . . scaffold1447 GLEAN mRNA 177005 178376 0.999674 + . ID=CGI_10013820; scaffold1447 TRF Tandem_Repeat 177005 178376 1944 + . . scaffold1447 GLEAN mRNA 180469 180510 0.999674 + . ID=CGI_10013820; scaffold1447 TRF Tandem_Repeat 180469 180510 68 + . . scaffold1447 GLEAN mRNA 265844 265898 1 + . ID=CGI_10013828; scaffold1447 TRF Tandem_Repeat 265844 265898 110 + . . scaffold1447 GLEAN mRNA 269396 269455 1 + . ID=CGI_10013828; scaffold1447 TRF Tandem_Repeat 269396 269455 113 + . . scaffold1447 GLEAN mRNA 304257 304317 0.937847 - . ID=CGI_10013830; scaffold1447 TRF Tandem_Repeat 304257 304317 79 + . . scaffold1385 GLEAN mRNA 24682 24831 0.957817 - . ID=CGI_10013834; scaffold1385 WUBlastX LINE_RTE-X 24682 24831 40 + . . scaffold1385 GLEAN mRNA 24613 24885 0.957817 - . ID=CGI_10013834; scaffold1385 WUBlastX LINE_RTE-X 24613 24885 26 + . . scaffold1385 GLEAN mRNA 24613 24834 0.957817 - . ID=CGI_10013834; scaffold1385 WUBlastX LINE_RTE-X 24613 24834 30 + . . scaffold1385 GLEAN mRNA 47208 47954 0.99876 + . ID=CGI_10013838; scaffold1385 TRF Tandem_Repeat 47208 47954 775 + . . scaffold1385 GLEAN mRNA 48203 48261 0.99876 + . ID=CGI_10013838; scaffold1385 TRF Tandem_Repeat 48203 48261 118 + . . scaffold1385 GLEAN mRNA 50643 50705 0.499836 + . ID=CGI_10013839; scaffold1385 TRF Tandem_Repeat 50643 50705 126 + . . scaffold1385 GLEAN mRNA 70386 71373 0.968283 - . ID=CGI_10013840; scaffold1385 TRF Tandem_Repeat 70386 71373 1203 + . . scaffold1385 GLEAN mRNA 76174 76232 0.968283 - . ID=CGI_10013840; scaffold1385 TRF Tandem_Repeat 76174 76232 91 + . . scaffold1385 GLEAN mRNA 81034 81079 0.968283 - . ID=CGI_10013840; scaffold1385 TRF Tandem_Repeat 81034 81079 58 + . . scaffold1385 GLEAN mRNA 81031 81084 0.968283 - . ID=CGI_10013840; scaffold1385 TRF Tandem_Repeat 81031 81084 58 + . . scaffold1385 GLEAN mRNA 93388 93416 0.195018 - . ID=CGI_10013841; scaffold1385 TRF Tandem_Repeat 93388 93416 58 + . . scaffold1385 GLEAN mRNA 95167 95210 0.195018 - . ID=CGI_10013841; scaffold1385 TRF Tandem_Repeat 95167 95210 88 + . . scaffold1385 GLEAN mRNA 96660 96713 0.195018 - . ID=CGI_10013841; scaffold1385 TRF Tandem_Repeat 96660 96713 99 + . . scaffold1385 GLEAN mRNA 105193 105229 0.195018 - . ID=CGI_10013841; scaffold1385 TRF Tandem_Repeat 105193 105229 56 + . . scaffold1385 GLEAN mRNA 144689 144745 0.615381 - . ID=CGI_10013842; scaffold1385 TRF Tandem_Repeat 144689 144745 69 + . . scaffold1385 GLEAN mRNA 175799 175925 1 + . ID=CGI_10013844; scaffold1385 TRF Tandem_Repeat 175799 175925 130 + . . scaffold1385 GLEAN mRNA 268826 269263 0.994335 - . ID=CGI_10013848; scaffold1385 WUBlastX LINE_RTE-X 268826 269263 49 - . . scaffold1385 GLEAN mRNA 268949 269323 0.994335 - . ID=CGI_10013848; scaffold1385 WUBlastX LINE_RTE-X 268949 269323 88 - . . scaffold1385 GLEAN mRNA 349381 349436 0.99897 - . ID=CGI_10013851; scaffold1385 TRF Tandem_Repeat 349381 349436 112 + . . scaffold1385 GLEAN mRNA 349703 349738 0.99897 - . ID=CGI_10013851; scaffold1385 TRF Tandem_Repeat 349703 349738 72 + . . scaffold1525 GLEAN mRNA 29601 29647 0.21079 + . ID=CGI_10013853; scaffold1525 TRF Tandem_Repeat 29601 29647 69 + . . scaffold1525 GLEAN mRNA 42155 42221 0.21079 + . ID=CGI_10013853; scaffold1525 TRF Tandem_Repeat 42155 42221 134 + . . scaffold1525 GLEAN mRNA 46466 46643 0.21079 + . ID=CGI_10013853; scaffold1525 TRF Tandem_Repeat 46466 46643 80 + . . scaffold1525 GLEAN mRNA 47700 47730 0.21079 + . ID=CGI_10013853; scaffold1525 TRF Tandem_Repeat 47700 47730 53 + . . scaffold1525 GLEAN mRNA 48682 48854 0.21079 + . ID=CGI_10013853; scaffold1525 TRF Tandem_Repeat 48682 48854 70 + . . scaffold1525 GLEAN mRNA 40701 41153 0.21079 + . ID=CGI_10013853; scaffold1525 WUBlastX LINE_L1-Tx1 40701 41153 128 + . . scaffold1525 GLEAN mRNA 42019 42144 0.21079 + . ID=CGI_10013853; scaffold1525 WUBlastX LINE_L1 42019 42144 23 + . . scaffold1525 GLEAN mRNA 39852 40067 0.21079 + . ID=CGI_10013853; scaffold1525 WUBlastX LINE_L1-Tx1 39852 40067 39 + . . scaffold1525 GLEAN mRNA 40070 40690 0.21079 + . ID=CGI_10013853; scaffold1525 WUBlastX LINE_L1-Tx1 40070 40690 389 + . . scaffold1525 GLEAN mRNA 40692 41075 0.21079 + . ID=CGI_10013853; scaffold1525 WUBlastX LINE_L1-Tx1 40692 41075 232 + . . scaffold1525 GLEAN mRNA 41165 41992 0.21079 + . ID=CGI_10013853; scaffold1525 WUBlastX LINE_L1-Tx1 41165 41992 162 + . . scaffold1525 GLEAN mRNA 39929 40654 0.21079 + . ID=CGI_10013853; scaffold1525 WUBlastX LINE_L1 39929 40654 145 + . . scaffold1525 GLEAN mRNA 39140 39208 0.21079 + . ID=CGI_10013853; scaffold1525 WUBlastX LINE_L2 39140 39208 21 + . . scaffold1525 GLEAN mRNA 56222 57349 0.21079 + . ID=CGI_10013853; scaffold1525 WUBlastX LINE_Penelope 56222 57349 513 + . . scaffold1525 GLEAN mRNA 74702 74769 0.443007 + . ID=CGI_10013854; scaffold1525 TRF Tandem_Repeat 74702 74769 86 + . . scaffold1525 GLEAN mRNA 82122 82146 0.443007 + . ID=CGI_10013854; scaffold1525 TRF Tandem_Repeat 82122 82146 50 + . . scaffold1525 GLEAN mRNA 98775 98819 0.443007 + . ID=CGI_10013854; scaffold1525 TRF Tandem_Repeat 98775 98819 90 + . . scaffold1525 GLEAN mRNA 99173 99208 0.443007 + . ID=CGI_10013854; scaffold1525 TRF Tandem_Repeat 99173 99208 72 + . . scaffold1525 GLEAN mRNA 99876 99992 0.443007 + . ID=CGI_10013854; scaffold1525 TRF Tandem_Repeat 99876 99992 144 + . . scaffold1525 GLEAN mRNA 100274 100346 0.443007 + . ID=CGI_10013854; scaffold1525 TRF Tandem_Repeat 100274 100346 146 + . . scaffold1525 GLEAN mRNA 155910 155945 0.839835 + . ID=CGI_10013858; scaffold1525 TRF Tandem_Repeat 155910 155945 54 + . . scaffold1525 GLEAN mRNA 156054 156098 0.839835 + . ID=CGI_10013858; scaffold1525 TRF Tandem_Repeat 156054 156098 90 + . . scaffold1525 GLEAN mRNA 165544 165685 0.839835 + . ID=CGI_10013858; scaffold1525 TRF Tandem_Repeat 165544 165685 128 + . . scaffold1525 GLEAN mRNA 165544 165685 0.583688 - . ID=CGI_10013859; scaffold1525 TRF Tandem_Repeat 165544 165685 128 + . . scaffold1525 GLEAN mRNA 210343 210368 0.840208 - . ID=CGI_10013862; scaffold1525 TRF Tandem_Repeat 210343 210368 52 + . . scaffold1525 GLEAN mRNA 230221 230433 0.866333 - . ID=CGI_10013864; scaffold1525 WUBlastX DNA_Kolobok 230221 230433 69 - . . scaffold1525 GLEAN mRNA 277125 277355 0.993853 - . ID=CGI_10013865; scaffold1525 WUBlastX LTR_Pao 277125 277355 39 - . . scaffold1525 GLEAN mRNA 284350 284389 0.993853 - . ID=CGI_10013865; scaffold1525 TRF Tandem_Repeat 284350 284389 53 + . . scaffold1525 GLEAN mRNA 284353 284389 0.993853 - . ID=CGI_10013865; scaffold1525 TRF Tandem_Repeat 284353 284389 65 + . . scaffold1525 GLEAN mRNA 282633 282938 0.993853 - . ID=CGI_10013865; scaffold1525 WUBlastX DNA_En-Spm 282633 282938 163 - . . scaffold1525 GLEAN mRNA 282937 283011 0.993853 - . ID=CGI_10013865; scaffold1525 WUBlastX DNA_En-Spm 282937 283011 27 - . . scaffold1525 GLEAN mRNA 357248 357952 0.815102 - . ID=CGI_10013870; scaffold1525 WUBlastX LTR_Ngaro 357248 357952 218 + . . scaffold1525 GLEAN mRNA 355098 355502 0.815102 - . ID=CGI_10013870; scaffold1525 WUBlastX LTR_Ngaro 355098 355502 95 + . . scaffold1525 GLEAN mRNA 355480 357045 0.815102 - . ID=CGI_10013870; scaffold1525 WUBlastX LTR_Ngaro 355480 357045 932 + . . scaffold1525 GLEAN mRNA 354803 355078 0.815102 - . ID=CGI_10013870; scaffold1525 WUBlastX LTR_Ngaro 354803 355078 47 + . . scaffold1525 GLEAN mRNA 357086 357928 0.815102 - . ID=CGI_10013870; scaffold1525 WUBlastX LTR_Ngaro 357086 357928 75 + . . scaffold1525 GLEAN mRNA 354863 355090 0.815102 - . ID=CGI_10013870; scaffold1525 WUBlastX LTR_Ngaro 354863 355090 69 + . . scaffold1525 GLEAN mRNA 354539 355093 0.815102 - . ID=CGI_10013870; scaffold1525 WUBlastX LTR_Ngaro 354539 355093 30 + . . scaffold43894 GLEAN mRNA 9919 9950 0.540542 + . ID=CGI_10013874; scaffold43894 TRF Tandem_Repeat 9919 9950 64 + . . scaffold43894 GLEAN mRNA 12986 13023 0.540542 + . ID=CGI_10013874; scaffold43894 TRF Tandem_Repeat 12986 13023 58 + . . scaffold43894 GLEAN mRNA 13936 13982 0.540542 + . ID=CGI_10013874; scaffold43894 TRF Tandem_Repeat 13936 13982 94 + . . scaffold43894 GLEAN mRNA 35684 35860 0.999982 + . ID=CGI_10013877; scaffold43894 TRF Tandem_Repeat 35684 35860 214 + . . scaffold43894 GLEAN mRNA 36148 36515 0.999982 + . ID=CGI_10013877; scaffold43894 TRF Tandem_Repeat 36148 36515 387 + . . scaffold43894 GLEAN mRNA 36146 36515 0.999982 + . ID=CGI_10013877; scaffold43894 TRF Tandem_Repeat 36146 36515 487 + . . scaffold43894 GLEAN mRNA 36146 36506 0.999982 + . ID=CGI_10013877; scaffold43894 TRF Tandem_Repeat 36146 36506 453 + . . scaffold43894 GLEAN mRNA 37169 37488 0.999982 + . ID=CGI_10013877; scaffold43894 TRF Tandem_Repeat 37169 37488 334 + . . scaffold43894 GLEAN mRNA 37163 37486 0.999982 + . ID=CGI_10013877; scaffold43894 TRF Tandem_Repeat 37163 37486 411 + . . scaffold43894 GLEAN mRNA 37163 37486 0.999982 + . ID=CGI_10013877; scaffold43894 TRF Tandem_Repeat 37163 37486 378 + . . scaffold43894 GLEAN mRNA 39944 39983 0.999982 + . ID=CGI_10013877; scaffold43894 TRF Tandem_Repeat 39944 39983 80 + . . scaffold43894 GLEAN mRNA 96329 96375 0.999987 + . ID=CGI_10013881; scaffold43894 TRF Tandem_Repeat 96329 96375 94 + . . scaffold43894 GLEAN mRNA 152184 152214 0.666532 + . ID=CGI_10013883; scaffold43894 TRF Tandem_Repeat 152184 152214 62 + . . scaffold43894 GLEAN mRNA 214178 214227 0.493011 + . ID=CGI_10013886; scaffold43894 TRF Tandem_Repeat 214178 214227 100 + . . scaffold43894 GLEAN mRNA 223536 223565 0.997651 - . ID=CGI_10013888; scaffold43894 TRF Tandem_Repeat 223536 223565 60 + . . scaffold43894 GLEAN mRNA 267325 267412 0.811559 - . ID=CGI_10013892; scaffold43894 TRF Tandem_Repeat 267325 267412 113 + . . scaffold43894 GLEAN mRNA 267324 267412 0.811559 - . ID=CGI_10013892; scaffold43894 TRF Tandem_Repeat 267324 267412 133 + . . scaffold43894 GLEAN mRNA 269170 269283 0.811559 - . ID=CGI_10013892; scaffold43894 TRF Tandem_Repeat 269170 269283 201 + . . scaffold43894 GLEAN mRNA 271470 271506 0.811559 - . ID=CGI_10013892; scaffold43894 TRF Tandem_Repeat 271470 271506 74 + . . scaffold43894 GLEAN mRNA 271705 271745 0.811559 - . ID=CGI_10013892; scaffold43894 TRF Tandem_Repeat 271705 271745 64 + . . scaffold43894 GLEAN mRNA 271743 271780 0.811559 - . ID=CGI_10013892; scaffold43894 TRF Tandem_Repeat 271743 271780 76 + . . scaffold43894 GLEAN mRNA 272271 272330 0.811559 - . ID=CGI_10013892; scaffold43894 TRF Tandem_Repeat 272271 272330 75 + . . scaffold43894 GLEAN mRNA 268229 268855 0.811559 - . ID=CGI_10013892; scaffold43894 WUBlastX LINE_RTE-X 268229 268855 115 + . . scaffold43894 GLEAN mRNA 321094 321300 0.997806 + . ID=CGI_10013894; scaffold43894 WUBlastX LINE_L2 321094 321300 44 + . . scaffold43894 GLEAN mRNA 321296 321303 0.997806 + . ID=CGI_10013894; scaffold43894 WUBlastX LINE_L2 321296 321484 35 + . . scaffold1885 GLEAN mRNA 64233 64427 1 - . ID=CGI_10013896; scaffold1885 TRF Tandem_Repeat 64233 64427 108 + . . scaffold1885 GLEAN mRNA 67277 67365 1 - . ID=CGI_10013896; scaffold1885 TRF Tandem_Repeat 67277 67365 81 + . . scaffold1885 GLEAN mRNA 112924 113115 0.999552 - . ID=CGI_10013898; scaffold1885 WUBlastX LINE_Penelope 112924 113115 55 - . . scaffold1885 GLEAN mRNA 181826 182744 0.970343 + . ID=CGI_10013899; scaffold1885 TRF Tandem_Repeat 181826 182744 984 + . . scaffold1885 GLEAN mRNA 250354 250922 0.997372 - . ID=CGI_10013902; scaffold1885 TRF Tandem_Repeat 250266 250922 648 + . . scaffold1885 GLEAN mRNA 252407 252834 0.997372 - . ID=CGI_10013902; scaffold1885 TRF Tandem_Repeat 252407 252834 395 + . . scaffold1885 GLEAN mRNA 252505 252956 0.997372 - . ID=CGI_10013902; scaffold1885 TRF Tandem_Repeat 252505 252956 417 + . . scaffold1885 GLEAN mRNA 261215 261268 0.258057 + . ID=CGI_10013903; scaffold1885 TRF Tandem_Repeat 261215 261268 90 + . . scaffold1885 GLEAN mRNA 259176 259376 0.258057 + . ID=CGI_10013903; scaffold1885 WUBlastX DNA_IS4EU 259059 259376 86 + . . scaffold1885 GLEAN mRNA 262725 262766 0.258057 + . ID=CGI_10013903; scaffold1885 TRF Tandem_Repeat 262725 262766 84 + . . scaffold1885 GLEAN mRNA 297334 297374 0.999938 + . ID=CGI_10013904; scaffold1885 TRF Tandem_Repeat 297334 297374 50 + . . scaffold1885 GLEAN mRNA 297334 297374 0.999938 + . ID=CGI_10013904; scaffold1885 TRF Tandem_Repeat 297334 297374 50 + . . scaffold1885 GLEAN mRNA 359032 359075 0.999501 + . ID=CGI_10013905; scaffold1885 TRF Tandem_Repeat 359032 359075 61 + . . scaffold1885 GLEAN mRNA 359858 359956 0.999501 + . ID=CGI_10013905; scaffold1885 WUBlastX LINE_I 359858 359956 28 - . . scaffold1885 GLEAN mRNA 369874 369917 0.999501 + . ID=CGI_10013905; scaffold1885 TRF Tandem_Repeat 369874 369917 52 + . . scaffold1885 GLEAN mRNA 364710 365627 0.999501 + . ID=CGI_10013905; scaffold1885 WUBlastX LINE_L1-Tx1 364710 365627 124 + . . scaffold1885 GLEAN mRNA 364698 365309 0.999501 + . ID=CGI_10013905; scaffold1885 WUBlastX LINE_L1-Tx1 364698 365309 154 + . . scaffold1885 GLEAN mRNA 364632 364898 0.999501 + . ID=CGI_10013905; scaffold1885 WUBlastX LINE_L1 364632 364898 104 + . . scaffold1885 GLEAN mRNA 360515 360745 0.999501 + . ID=CGI_10013905; scaffold1885 WUBlastX LINE_CR1-L2 360515 360745 75 - . . scaffold1885 GLEAN mRNA 360051 360518 0.999501 + . ID=CGI_10013905; scaffold1885 WUBlastX LINE_L2 360051 360518 103 - . . scaffold1885 GLEAN mRNA 360174 360518 0.999501 + . ID=CGI_10013905; scaffold1885 WUBlastX LINE_CR1-L2 360174 360518 169 - . . scaffold94 GLEAN mRNA 50180 50302 0.779981 + . ID=CGI_10013908; scaffold94 WUBlastX DNA_Sola 50180 50302 96 + . . scaffold94 GLEAN mRNA 49343 49636 0.779981 + . ID=CGI_10013908; scaffold94 WUBlastX DNA_Maverick 49343 49636 108 + . . scaffold94 GLEAN mRNA 64578 65351 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 64578 65351 57 + . . scaffold94 GLEAN mRNA 64327 64476 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 64327 64476 33 + . . scaffold94 GLEAN mRNA 64428 64976 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 64428 64976 28 + . . scaffold94 GLEAN mRNA 64273 64476 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_ERV1 64273 64476 24 + . . scaffold94 GLEAN mRNA 63482 64069 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 63482 64069 93 + . . scaffold94 GLEAN mRNA 64641 65012 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 64641 65012 62 + . . scaffold94 GLEAN mRNA 64722 65063 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_ERV1 64722 65063 64 + . . scaffold94 GLEAN mRNA 64312 64422 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_ERVK 64312 64422 42 + . . scaffold94 GLEAN mRNA 67471 68613 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy-Cigr 67471 68613 376 + . . scaffold94 GLEAN mRNA 66913 68427 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 66913 68427 582 + . . scaffold94 GLEAN mRNA 65754 66497 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 65754 66497 443 + . . scaffold94 GLEAN mRNA 66667 66885 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy-Cigr 66667 66885 85 + . . scaffold94 GLEAN mRNA 66488 66799 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 66488 66799 121 + . . scaffold94 GLEAN mRNA 65751 66698 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 65751 66698 175 + . . scaffold94 GLEAN mRNA 66667 66840 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 66667 66840 92 + . . scaffold94 GLEAN mRNA 65550 66476 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 65550 66476 302 + . . scaffold94 GLEAN mRNA 65392 65769 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 65392 65769 248 + . . scaffold94 GLEAN mRNA 65314 65772 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 65314 65772 200 + . . scaffold94 GLEAN mRNA 76214 76261 0.497561 - . ID=CGI_10013911; scaffold94 TRF Tandem_Repeat 76214 76261 78 + . . scaffold94 GLEAN mRNA 82458 82502 0.497561 - . ID=CGI_10013911; scaffold94 TRF Tandem_Repeat 82458 82502 90 + . . scaffold94 GLEAN mRNA 84953 84991 0.497561 - . ID=CGI_10013911; scaffold94 TRF Tandem_Repeat 84953 84991 78 + . . scaffold94 GLEAN mRNA 105126 105176 0.99999 - . ID=CGI_10013912; scaffold94 WUBlastX LTR_Copia 105126 105176 25 - . . scaffold94 GLEAN mRNA 130066 130445 0.804225 + . ID=CGI_10013913; scaffold94 TRF Tandem_Repeat 130066 130445 362 + . . scaffold94 GLEAN mRNA 119729 120112 0.804225 + . ID=CGI_10013913; scaffold94 WUBlastX DNA_hAT-Blackja 119729 120112 58 + . . scaffold94 GLEAN mRNA 118806 119738 0.804225 + . ID=CGI_10013913; scaffold94 WUBlastX DNA_hAT-Blackja 118806 119738 558 + . . scaffold94 GLEAN mRNA 120038 120616 0.804225 + . ID=CGI_10013913; scaffold94 WUBlastX DNA_hAT-Blackja 120038 120616 178 + . . scaffold94 GLEAN mRNA 120703 121077 0.804225 + . ID=CGI_10013913; scaffold94 WUBlastX DNA_hAT-Blackja 120703 121077 171 + . . scaffold94 GLEAN mRNA 119843 120664 0.804225 + . ID=CGI_10013913; scaffold94 WUBlastX DNA_hAT-Blackja 119843 120664 168 + . . scaffold94 GLEAN mRNA 146085 146122 0.97197 - . ID=CGI_10013914; scaffold94 TRF Tandem_Repeat 146085 146122 60 + . . scaffold94 GLEAN mRNA 241049 241207 0.915918 + . ID=CGI_10013919; scaffold94 WUBlastX LINE_RTE-X 241049 241207 40 - . . scaffold94 GLEAN mRNA 311912 311962 0.561676 - . ID=CGI_10013925; scaffold94 TRF Tandem_Repeat 311912 311962 102 + . . scaffold94 GLEAN mRNA 346930 347338 0.628157 - . ID=CGI_10013929; scaffold94 TRF Tandem_Repeat 346930 347338 350 + . . scaffold94 GLEAN mRNA 346930 347338 0.628157 - . ID=CGI_10013929; scaffold94 TRF Tandem_Repeat 346930 347338 371 + . . scaffold94 GLEAN mRNA 346930 347275 0.628157 - . ID=CGI_10013929; scaffold94 TRF Tandem_Repeat 346930 347275 398 + . . scaffold1860 GLEAN mRNA 69447 69504 0.651134 - . ID=CGI_10013937; scaffold1860 TRF Tandem_Repeat 69447 69504 116 + . . scaffold1860 GLEAN mRNA 90920 90944 0.482927 + . ID=CGI_10013940; scaffold1860 TRF Tandem_Repeat 90920 90944 50 + . . scaffold1860 GLEAN mRNA 94634 94687 0.482927 + . ID=CGI_10013940; scaffold1860 TRF Tandem_Repeat 94634 94687 108 + . . scaffold1860 GLEAN mRNA 95461 95665 0.482927 + . ID=CGI_10013940; scaffold1860 TRF Tandem_Repeat 95461 95665 367 + . . scaffold1860 GLEAN mRNA 97420 97527 0.482927 + . ID=CGI_10013940; scaffold1860 WUBlastX LINE_L1 97420 97527 57 - . . scaffold1860 GLEAN mRNA 97181 97372 0.482927 + . ID=CGI_10013940; scaffold1860 WUBlastX LINE_L1 97181 97372 42 - . . scaffold1860 GLEAN mRNA 97081 97206 0.482927 + . ID=CGI_10013940; scaffold1860 WUBlastX LINE_L1-Tx1 97081 97206 38 - . . scaffold1860 GLEAN mRNA 92351 92830 0.482927 + . ID=CGI_10013940; scaffold1860 WUBlastX LINE_RTE-BovB 92351 92830 155 - . . scaffold1860 GLEAN mRNA 97420 97650 0.482927 + . ID=CGI_10013940; scaffold1860 WUBlastX LINE_L1-Tx1 97420 97650 43 - . . scaffold1860 GLEAN mRNA 97229 97372 0.482927 + . ID=CGI_10013940; scaffold1860 WUBlastX LINE_L1-Tx1 97229 97372 49 - . . scaffold1860 GLEAN mRNA 97420 97605 0.482927 + . ID=CGI_10013940; scaffold1860 WUBlastX LINE_L1-Tx1 97420 97605 54 - . . scaffold1860 GLEAN mRNA 97743 98312 0.482927 + . ID=CGI_10013940; scaffold1860 WUBlastX LINE_L1-Tx1 97743 98312 73 - . . scaffold1860 GLEAN mRNA 110130 110172 1 + . ID=CGI_10013941; scaffold1860 TRF Tandem_Repeat 110130 110172 86 + . . scaffold1860 GLEAN mRNA 174056 174313 0.996819 - . ID=CGI_10013947; scaffold1860 TRF Tandem_Repeat 174056 174313 276 + . . scaffold1860 GLEAN mRNA 202624 202688 0.754258 + . ID=CGI_10013948; scaffold1860 TRF Tandem_Repeat 202624 202688 60 + . . scaffold1860 GLEAN mRNA 329745 329793 0.916009 + . ID=CGI_10013950; scaffold1860 TRF Tandem_Repeat 329745 329793 98 + . . scaffold1860 GLEAN mRNA 340337 340380 0.916009 + . ID=CGI_10013950; scaffold1860 TRF Tandem_Repeat 340337 340380 61 + . . scaffold1860 GLEAN mRNA 340325 340380 0.916009 + . ID=CGI_10013950; scaffold1860 TRF Tandem_Repeat 340325 340380 50 + . . scaffold1860 GLEAN mRNA 334219 334761 0.916009 + . ID=CGI_10013950; scaffold1860 WUBlastX LINE_RTE-X 334219 334761 32 - . . scaffold1860 GLEAN mRNA 334222 334659 0.916009 + . ID=CGI_10013950; scaffold1860 WUBlastX LINE_RTE-X 334222 334659 201 - . . scaffold1860 GLEAN mRNA 334123 334524 0.916009 + . ID=CGI_10013950; scaffold1860 WUBlastX LINE_Rex-Babar 334123 334524 61 - . . scaffold1860 GLEAN mRNA 351800 351875 0.982633 + . ID=CGI_10013951; scaffold1860 TRF Tandem_Repeat 351800 351875 107 + . . scaffold1860 GLEAN mRNA 351949 351995 0.982633 + . ID=CGI_10013951; scaffold1860 TRF Tandem_Repeat 351949 351995 60 + . . scaffold1144 GLEAN mRNA 22657 22741 0.999846 + . ID=CGI_10013953; scaffold1144 TRF Tandem_Repeat 22657 22741 170 + . . scaffold1144 GLEAN mRNA 30106 30185 0.999675 - . ID=CGI_10013954; scaffold1144 TRF Tandem_Repeat 30106 30185 94 + . . scaffold1144 GLEAN mRNA 56163 56965 0.999573 + . ID=CGI_10013956; scaffold1144 TRF Tandem_Repeat 56163 56965 1309 + . . scaffold1144 GLEAN mRNA 57013 57066 0.999573 + . ID=CGI_10013956; scaffold1144 TRF Tandem_Repeat 57013 57066 65 + . . scaffold1144 GLEAN mRNA 57013 57069 0.999573 + . ID=CGI_10013956; scaffold1144 TRF Tandem_Repeat 57013 57069 80 + . . scaffold1144 GLEAN mRNA 60582 60623 0.999573 + . ID=CGI_10013956; scaffold1144 TRF Tandem_Repeat 60582 60623 59 + . . scaffold1144 GLEAN mRNA 62647 63467 0.999573 + . ID=CGI_10013956; scaffold1144 TRF Tandem_Repeat 62647 63467 789 + . . scaffold1144 GLEAN mRNA 56163 56965 0.582371 - . ID=CGI_10013957; scaffold1144 TRF Tandem_Repeat 56163 56965 1309 + . . scaffold1144 GLEAN mRNA 57013 57066 0.582371 - . ID=CGI_10013957; scaffold1144 TRF Tandem_Repeat 57013 57066 65 + . . scaffold1144 GLEAN mRNA 57013 57069 0.582371 - . ID=CGI_10013957; scaffold1144 TRF Tandem_Repeat 57013 57069 80 + . . scaffold1144 GLEAN mRNA 60582 60623 0.582371 - . ID=CGI_10013957; scaffold1144 TRF Tandem_Repeat 60582 60623 59 + . . scaffold1144 GLEAN mRNA 62647 63467 0.582371 - . ID=CGI_10013957; scaffold1144 TRF Tandem_Repeat 62647 63467 789 + . . scaffold1144 GLEAN mRNA 70588 70637 0.582371 - . ID=CGI_10013957; scaffold1144 TRF Tandem_Repeat 70588 70637 100 + . . scaffold1144 GLEAN mRNA 70588 70637 0.999898 + . ID=CGI_10013958; scaffold1144 TRF Tandem_Repeat 70588 70637 100 + . . scaffold1144 GLEAN mRNA 78922 79006 0.757486 - . ID=CGI_10013959; scaffold1144 WUBlastX LTR_ERV1 78833 79006 23 - . . scaffold1144 GLEAN mRNA 95369 95551 0.373633 + . ID=CGI_10013960; scaffold1144 TRF Tandem_Repeat 95369 95551 251 + . . scaffold1144 GLEAN mRNA 95310 95551 0.373633 + . ID=CGI_10013960; scaffold1144 TRF Tandem_Repeat 95310 95551 263 + . . scaffold1144 GLEAN mRNA 110485 110583 0.373633 + . ID=CGI_10013960; scaffold1144 TRF Tandem_Repeat 110485 110583 173 + . . scaffold1144 GLEAN mRNA 110632 110725 0.373633 + . ID=CGI_10013960; scaffold1144 TRF Tandem_Repeat 110632 110725 116 + . . scaffold1144 GLEAN mRNA 111315 111543 0.373633 + . ID=CGI_10013960; scaffold1144 TRF Tandem_Repeat 111315 111543 128 + . . scaffold1144 GLEAN mRNA 111315 111453 0.373633 + . ID=CGI_10013960; scaffold1144 TRF Tandem_Repeat 111315 111453 84 + . . scaffold1144 GLEAN mRNA 112177 112204 0.373633 + . ID=CGI_10013960; scaffold1144 TRF Tandem_Repeat 112177 112204 56 + . . scaffold1144 GLEAN mRNA 370473 370503 0.928552 - . ID=CGI_10013966; scaffold1144 TRF Tandem_Repeat 370473 370503 53 + . . scaffold395 GLEAN mRNA 85648 87325 0.998176 + . ID=CGI_10013969; scaffold395 TRF Tandem_Repeat 85648 87325 2041 + . . scaffold395 GLEAN mRNA 85648 87371 0.998176 + . ID=CGI_10013969; scaffold395 TRF Tandem_Repeat 85648 87371 2300 + . . scaffold395 GLEAN mRNA 88649 88789 0.998176 + . ID=CGI_10013969; scaffold395 WUBlastX LINE_R1 88649 88789 20 + . . scaffold395 GLEAN mRNA 90144 90373 0.748632 + . ID=CGI_10013970; scaffold395 TRF Tandem_Repeat 90144 90373 230 + . . scaffold395 GLEAN mRNA 90132 90382 0.748632 + . ID=CGI_10013970; scaffold395 TRF Tandem_Repeat 90132 90382 274 + . . scaffold395 GLEAN mRNA 99448 99737 0.748632 + . ID=CGI_10013970; scaffold395 TRF Tandem_Repeat 99448 99737 514 + . . scaffold395 GLEAN mRNA 101232 101393 0.748632 + . ID=CGI_10013970; scaffold395 TRF Tandem_Repeat 101232 101393 279 + . . scaffold395 GLEAN mRNA 145101 145149 0.999735 + . ID=CGI_10013973; scaffold395 TRF Tandem_Repeat 145101 145149 89 + . . scaffold395 GLEAN mRNA 156936 157920 1 + . ID=CGI_10013975; scaffold395 TRF Tandem_Repeat 156936 157920 1346 + . . scaffold395 GLEAN mRNA 156936 157920 1 + . ID=CGI_10013975; scaffold395 TRF Tandem_Repeat 156936 157920 1411 + . . scaffold395 GLEAN mRNA 167908 168385 0.937847 + . ID=CGI_10013977; scaffold395 TRF Tandem_Repeat 167908 168385 119 + . . scaffold395 GLEAN mRNA 167979 168385 0.937847 + . ID=CGI_10013977; scaffold395 TRF Tandem_Repeat 167979 168385 454 + . . scaffold395 GLEAN mRNA 168004 168385 0.937847 + . ID=CGI_10013977; scaffold395 TRF Tandem_Repeat 168004 168385 445 + . . scaffold395 GLEAN mRNA 172147 172257 0.937847 + . ID=CGI_10013977; scaffold395 WUBlastX LTR_ERVK 172147 172257 58 + . . scaffold395 GLEAN mRNA 187158 188355 0.999674 + . ID=CGI_10013978; scaffold395 TRF Tandem_Repeat 187158 188355 2369 + . . scaffold395 GLEAN mRNA 189088 189544 0.999674 + . ID=CGI_10013978; scaffold395 TRF Tandem_Repeat 189088 189544 709 + . . scaffold395 GLEAN mRNA 189699 189762 0.999674 + . ID=CGI_10013978; scaffold395 TRF Tandem_Repeat 189699 189762 58 + . . scaffold395 GLEAN mRNA 190459 190604 0.999674 + . ID=CGI_10013978; scaffold395 TRF Tandem_Repeat 190459 190604 107 + . . scaffold395 GLEAN mRNA 191581 191673 0.999674 + . ID=CGI_10013978; scaffold395 TRF Tandem_Repeat 191581 191673 107 + . . scaffold395 GLEAN mRNA 192826 193601 0.999674 + . ID=CGI_10013978; scaffold395 TRF Tandem_Repeat 192826 193601 1160 + . . scaffold395 GLEAN mRNA 200404 201092 0.999674 + . ID=CGI_10013978; scaffold395 TRF Tandem_Repeat 200404 201092 924 + . . scaffold395 GLEAN mRNA 202780 203084 0.999674 + . ID=CGI_10013978; scaffold395 TRF Tandem_Repeat 202780 203084 583 + . . scaffold395 GLEAN mRNA 214586 214971 1 + . ID=CGI_10013980; scaffold395 TRF Tandem_Repeat 214586 214971 601 + . . scaffold395 GLEAN mRNA 258464 258556 0.364372 - . ID=CGI_10013982; scaffold395 TRF Tandem_Repeat 258464 258556 150 + . . scaffold395 GLEAN mRNA 333936 334175 0.32577 + . ID=CGI_10013986; scaffold395 WUBlastX LINE_RTE-X 333936 334175 45 + . . scaffold43920 GLEAN mRNA 53671 53714 0.726327 + . ID=CGI_10013987; scaffold43920 TRF Tandem_Repeat 53671 53714 88 + . . scaffold43920 GLEAN mRNA 57397 60831 0.726327 + . ID=CGI_10013987; scaffold43920 WUBlastX LINE_L1-Tx1 57397 60831 1130 + . . scaffold43920 GLEAN mRNA 55916 56587 0.726327 + . ID=CGI_10013987; scaffold43920 WUBlastX LINE_CR1 55916 56587 196 + . . scaffold43920 GLEAN mRNA 103014 103696 0.987298 - . ID=CGI_10013991; scaffold43920 TRF Tandem_Repeat 103014 103696 981 + . . scaffold43920 GLEAN mRNA 103870 103896 0.987298 - . ID=CGI_10013991; scaffold43920 TRF Tandem_Repeat 103870 103896 54 + . . scaffold43920 GLEAN mRNA 105234 105541 0.987298 - . ID=CGI_10013991; scaffold43920 TRF Tandem_Repeat 105234 105541 415 + . . scaffold43920 GLEAN mRNA 115064 115188 0.987298 - . ID=CGI_10013991; scaffold43920 TRF Tandem_Repeat 115064 115188 85 + . . scaffold43920 GLEAN mRNA 116069 116354 0.987298 - . ID=CGI_10013991; scaffold43920 TRF Tandem_Repeat 116069 116354 146 + . . scaffold43920 GLEAN mRNA 114629 115236 0.987298 - . ID=CGI_10013991; scaffold43920 TRF Tandem_Repeat 114629 115236 733 + . . scaffold43920 GLEAN mRNA 114629 115226 0.987298 - . ID=CGI_10013991; scaffold43920 TRF Tandem_Repeat 114629 115226 781 + . . scaffold43920 GLEAN mRNA 175545 176639 0.493317 + . ID=CGI_10013994; scaffold43920 TRF Tandem_Repeat 175545 176639 1124 + . . scaffold43920 GLEAN mRNA 185242 185287 0.493317 + . ID=CGI_10013994; scaffold43920 TRF Tandem_Repeat 185242 185287 92 + . . scaffold43920 GLEAN mRNA 186286 186329 0.493317 + . ID=CGI_10013994; scaffold43920 TRF Tandem_Repeat 186286 186329 63 + . . scaffold43920 GLEAN mRNA 183485 183775 0.493317 + . ID=CGI_10013994; scaffold43920 WUBlastX LINE_L1-Tx1 183485 183775 140 - . . scaffold43920 GLEAN mRNA 183772 184209 0.493317 + . ID=CGI_10013994; scaffold43920 WUBlastX LINE_L1-Tx1 183772 184209 173 - . . scaffold43920 GLEAN mRNA 197016 197122 0.493317 + . ID=CGI_10013994; scaffold43920 TRF Tandem_Repeat 197016 197122 115 + . . scaffold43920 GLEAN mRNA 197448 197721 0.493317 + . ID=CGI_10013994; scaffold43920 TRF Tandem_Repeat 197448 197721 107 + . . scaffold43920 GLEAN mRNA 197450 197591 0.493317 + . ID=CGI_10013994; scaffold43920 TRF Tandem_Repeat 197450 197591 85 + . . scaffold43920 GLEAN mRNA 197618 197725 0.493317 + . ID=CGI_10013994; scaffold43920 TRF Tandem_Repeat 197618 197725 126 + . . scaffold43920 GLEAN mRNA 199432 199536 0.493317 + . ID=CGI_10013994; scaffold43920 TRF Tandem_Repeat 199432 199536 70 + . . scaffold43920 GLEAN mRNA 261043 261372 0.999991 + . ID=CGI_10013995; scaffold43920 WUBlastX DNA_TcMar-Tc1 261043 261372 34 + . . scaffold43920 GLEAN mRNA 261046 261288 0.999991 + . ID=CGI_10013995; scaffold43920 WUBlastX DNA_TcMar-Tc1 261046 261288 36 + . . scaffold43920 GLEAN mRNA 260886 261035 0.999991 + . ID=CGI_10013995; scaffold43920 WUBlastX DNA_TcMar-Tc1 260886 261035 56 + . . scaffold43920 GLEAN mRNA 287307 288014 0.981696 + . ID=CGI_10013997; scaffold43920 TRF Tandem_Repeat 287307 288014 1220 + . . scaffold43920 GLEAN mRNA 288023 288066 0.981696 + . ID=CGI_10013997; scaffold43920 TRF Tandem_Repeat 288023 288066 61 + . . scaffold43920 GLEAN mRNA 288020 288053 0.981696 + . ID=CGI_10013997; scaffold43920 TRF Tandem_Repeat 288020 288053 59 + . . scaffold43920 GLEAN mRNA 302995 303039 0.985601 + . ID=CGI_10013998; scaffold43920 TRF Tandem_Repeat 302995 303039 90 + . . scaffold43920 GLEAN mRNA 307722 308189 0.985601 + . ID=CGI_10013998; scaffold43920 WUBlastX DNA_MuDR 307722 308309 44 + . . scaffold43920 GLEAN mRNA 307962 308189 0.985601 + . ID=CGI_10013998; scaffold43920 WUBlastX DNA_MuDR 307962 308426 66 + . . scaffold43920 GLEAN mRNA 319512 319862 0.642175 + . ID=CGI_10013999; scaffold43920 WUBlastX DNA_Harbinger 319512 319862 73 + . . scaffold43920 GLEAN mRNA 329080 329304 1 - . ID=CGI_10014000; scaffold43920 WUBlastX LINE_L1-Tx1 329080 329304 50 - . . scaffold43920 GLEAN mRNA 329323 329676 1 - . ID=CGI_10014000; scaffold43920 WUBlastX LINE_L1-Tx1 329323 329676 145 - . . scaffold43920 GLEAN mRNA 329600 330397 1 - . ID=CGI_10014000; scaffold43920 WUBlastX LINE_L1-Tx1 329600 330397 463 - . . scaffold43920 GLEAN mRNA 329678 330535 1 - . ID=CGI_10014000; scaffold43920 WUBlastX LINE_L1 329678 330535 207 - . . scaffold43920 GLEAN mRNA 354017 354172 0.562069 - . ID=CGI_10014001; scaffold43920 TRF Tandem_Repeat 354017 354172 140 + . . scaffold43920 GLEAN mRNA 346880 347167 0.562069 - . ID=CGI_10014001; scaffold43920 WUBlastX DNA_Kolobok 346880 347167 50 - . . scaffold43920 GLEAN mRNA 346880 347080 0.562069 - . ID=CGI_10014001; scaffold43920 WUBlastX DNA_Kolobok 346880 347080 65 - . . scaffold43920 GLEAN mRNA 357992 358171 0.562069 - . ID=CGI_10014001; scaffold43920 WUBlastX LINE_RTE-X 357992 358171 84 - . . scaffold43920 GLEAN mRNA 346883 347041 0.562069 - . ID=CGI_10014001; scaffold43920 WUBlastX DNA_Kolobok 346883 347041 79 - . . scaffold43920 GLEAN mRNA 347351 347539 0.562069 - . ID=CGI_10014001; scaffold43920 WUBlastX DNA_Kolobok 347351 347539 50 - . . scaffold43920 GLEAN mRNA 357959 358171 0.562069 - . ID=CGI_10014001; scaffold43920 WUBlastX LINE_RTE-X 357959 358171 70 - . . scaffold43920 GLEAN mRNA 362303 362347 0.562069 - . ID=CGI_10014001; scaffold43920 TRF Tandem_Repeat 362303 362347 54 + . . scaffold43920 GLEAN mRNA 365537 365590 0.562069 - . ID=CGI_10014001; scaffold43920 TRF Tandem_Repeat 365537 365590 108 + . . scaffold43920 GLEAN mRNA 367177 367207 0.562069 - . ID=CGI_10014001; scaffold43920 TRF Tandem_Repeat 367177 367207 62 + . . scaffold976 GLEAN mRNA 46375 46992 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Pao 46375 46992 147 - . . scaffold976 GLEAN mRNA 42888 43376 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Gypsy 42888 43376 24 - . . scaffold976 GLEAN mRNA 46735 47061 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Pao 46735 47061 42 - . . scaffold976 GLEAN mRNA 43785 43937 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Gypsy 43785 43937 27 - . . scaffold976 GLEAN mRNA 46363 46794 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Pao 46363 46794 209 - . . scaffold976 GLEAN mRNA 41451 42443 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Gypsy-Cigr 41451 42443 524 - . . scaffold976 GLEAN mRNA 42410 42889 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Gypsy-Cigr 42410 42889 209 - . . scaffold976 GLEAN mRNA 42972 43538 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Gypsy-Cigr 42972 43538 160 - . . scaffold976 GLEAN mRNA 43116 43628 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Gypsy 43116 43628 67 - . . scaffold976 GLEAN mRNA 50442 50477 0.884558 - . ID=CGI_10014002; scaffold976 TRF Tandem_Repeat 50442 50477 72 + . . scaffold976 GLEAN mRNA 51860 51912 0.884558 - . ID=CGI_10014002; scaffold976 TRF Tandem_Repeat 51860 51912 106 + . . scaffold976 GLEAN mRNA 49413 49634 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX DNA_TcMar-Tc1 49413 49634 132 - . . scaffold976 GLEAN mRNA 56797 58854 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Gypsy 56797 58854 1634 + . . scaffold976 GLEAN mRNA 49658 50002 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX DNA_TcMar-Tc1 49658 50002 51 - . . scaffold976 GLEAN mRNA 49263 49634 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX DNA_TcMar-Tc1 49263 49634 99 - . . scaffold976 GLEAN mRNA 54923 55180 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Gypsy 54923 55180 43 + . . scaffold976 GLEAN mRNA 54977 56803 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Gypsy 54977 56803 1099 + . . scaffold976 GLEAN mRNA 84330 84370 1 - . ID=CGI_10014004; scaffold976 TRF Tandem_Repeat 84330 84370 55 + . . scaffold976 GLEAN mRNA 93596 93631 0.801532 + . ID=CGI_10014005; scaffold976 TRF Tandem_Repeat 93596 93631 72 + . . scaffold976 GLEAN mRNA 94360 94487 0.801532 + . ID=CGI_10014005; scaffold976 TRF Tandem_Repeat 94360 94487 202 + . . scaffold976 GLEAN mRNA 107265 107344 0.999949 + . ID=CGI_10014006; scaffold976 TRF Tandem_Repeat 107265 107344 74 + . . scaffold976 GLEAN mRNA 108177 108768 0.999949 + . ID=CGI_10014006; scaffold976 TRF Tandem_Repeat 108177 108768 979 + . . scaffold976 GLEAN mRNA 108177 109195 0.999949 + . ID=CGI_10014006; scaffold976 TRF Tandem_Repeat 108177 109195 1270 + . . scaffold976 GLEAN mRNA 108177 109195 0.999949 + . ID=CGI_10014006; scaffold976 TRF Tandem_Repeat 108177 109195 1262 + . . scaffold976 GLEAN mRNA 108775 109196 0.999949 + . ID=CGI_10014006; scaffold976 TRF Tandem_Repeat 108775 109196 200 + . . scaffold976 GLEAN mRNA 108772 109195 0.999949 + . ID=CGI_10014006; scaffold976 TRF Tandem_Repeat 108772 109195 431 + . . scaffold976 GLEAN mRNA 117952 118179 0.999949 + . ID=CGI_10014006; scaffold976 WUBlastX LINE_L2 117952 118179 24 + . . scaffold976 GLEAN mRNA 116726 117409 0.999949 + . ID=CGI_10014006; scaffold976 WUBlastX LINE_L1-Tx1 116726 117409 426 + . . scaffold976 GLEAN mRNA 276146 276179 0.702349 + . ID=CGI_10014014; scaffold976 TRF Tandem_Repeat 276146 276179 50 + . . scaffold976 GLEAN mRNA 275067 275273 0.702349 + . ID=CGI_10014014; scaffold976 WUBlastX DNA_Harbinger 275067 275273 122 + . . scaffold976 GLEAN mRNA 275319 275369 0.702349 + . ID=CGI_10014014; scaffold976 WUBlastX DNA_Harbinger 275319 275369 28 + . . scaffold976 GLEAN mRNA 275067 275342 0.702349 + . ID=CGI_10014014; scaffold976 WUBlastX DNA_Harbinger 275067 275342 93 + . . scaffold976 GLEAN mRNA 298357 298410 0.987682 + . ID=CGI_10014015; scaffold976 TRF Tandem_Repeat 298357 298410 90 + . . scaffold976 GLEAN mRNA 298357 298410 0.271802 - . ID=CGI_10014016; scaffold976 TRF Tandem_Repeat 298357 298410 90 + . . scaffold976 GLEAN mRNA 314613 314656 0.271802 - . ID=CGI_10014016; scaffold976 TRF Tandem_Repeat 314613 314656 88 + . . scaffold976 GLEAN mRNA 315448 315526 0.271802 - . ID=CGI_10014016; scaffold976 TRF Tandem_Repeat 315448 315526 149 + . . scaffold976 GLEAN mRNA 314613 314656 0.551212 + . ID=CGI_10014017; scaffold976 TRF Tandem_Repeat 314613 314656 88 + . . scaffold976 GLEAN mRNA 315448 315526 0.551212 + . ID=CGI_10014017; scaffold976 TRF Tandem_Repeat 315448 315526 149 + . . scaffold976 GLEAN mRNA 325215 325264 0.551212 + . ID=CGI_10014017; scaffold976 TRF Tandem_Repeat 325215 325264 55 + . . scaffold976 GLEAN mRNA 325669 325719 0.551212 + . ID=CGI_10014017; scaffold976 TRF Tandem_Repeat 325669 325719 102 + . . scaffold976 GLEAN mRNA 327317 327393 0.551212 + . ID=CGI_10014017; scaffold976 TRF Tandem_Repeat 327317 327393 86 + . . scaffold976 GLEAN mRNA 334860 334899 0.551212 + . ID=CGI_10014017; scaffold976 TRF Tandem_Repeat 334860 334899 53 + . . scaffold976 GLEAN mRNA 327879 327980 0.551212 + . ID=CGI_10014017; scaffold976 WUBlastX LINE_Penelope 327879 327980 32 + . . scaffold976 GLEAN mRNA 328018 328239 0.551212 + . ID=CGI_10014017; scaffold976 WUBlastX LINE_Penelope 328018 328239 46 + . . scaffold976 GLEAN mRNA 359227 359947 0.51151 + . ID=CGI_10014020; scaffold976 TRF Tandem_Repeat 359227 359947 921 + . . scaffold976 GLEAN mRNA 362426 362488 0.51151 + . ID=CGI_10014020; scaffold976 TRF Tandem_Repeat 362426 362488 119 + . . scaffold976 GLEAN mRNA 369724 369754 0.51151 + . ID=CGI_10014020; scaffold976 TRF Tandem_Repeat 369724 369754 62 + . . scaffold976 GLEAN mRNA 375562 375620 0.51151 + . ID=CGI_10014020; scaffold976 TRF Tandem_Repeat 375562 375620 118 + . . scaffold976 GLEAN mRNA 372295 372846 0.51151 + . ID=CGI_10014020; scaffold976 WUBlastX LINE_L2 372295 372846 62 + . . scaffold976 GLEAN mRNA 372920 373162 0.51151 + . ID=CGI_10014020; scaffold976 WUBlastX LINE_L2 372920 373162 20 + . . scaffold976 GLEAN mRNA 372932 373099 0.51151 + . ID=CGI_10014020; scaffold976 WUBlastX LINE_L2 372932 373099 21 + . . scaffold976 GLEAN mRNA 371097 371345 0.51151 + . ID=CGI_10014020; scaffold976 WUBlastX LINE_L2 371097 371345 98 + . . scaffold976 GLEAN mRNA 373159 373419 0.51151 + . ID=CGI_10014020; scaffold976 WUBlastX LINE_L2 373159 373419 37 + . . scaffold976 GLEAN mRNA 371007 371357 0.51151 + . ID=CGI_10014020; scaffold976 WUBlastX LINE_L2 371007 371357 80 + . . scaffold976 GLEAN mRNA 371100 371447 0.51151 + . ID=CGI_10014020; scaffold976 WUBlastX LINE_L2 371100 371447 24 + . . scaffold976 GLEAN mRNA 377755 377785 0.51151 + . ID=CGI_10014020; scaffold976 TRF Tandem_Repeat 377755 377785 62 + . . scaffold983 GLEAN mRNA 90704 91300 0.906413 + . ID=CGI_10014027; scaffold983 WUBlastX LINE_RTE-X 90704 91300 266 + . . scaffold983 GLEAN mRNA 90590 91249 0.906413 + . ID=CGI_10014027; scaffold983 WUBlastX LINE_CR1 90590 91249 42 + . . scaffold983 GLEAN mRNA 247561 247995 1 - . ID=CGI_10014030; scaffold983 WUBlastX DNA_NOF 247561 247995 32 + . . scaffold983 GLEAN mRNA 247470 247595 1 - . ID=CGI_10014030; scaffold983 WUBlastX DNA_NOF 247470 247595 22 + . . scaffold983 GLEAN mRNA 247678 247986 1 - . ID=CGI_10014030; scaffold983 WUBlastX DNA_NOF? 247678 247986 102 + . . scaffold983 GLEAN mRNA 247648 247824 1 - . ID=CGI_10014030; scaffold983 WUBlastX DNA_IS4EU 247648 247824 38 + . . scaffold983 GLEAN mRNA 354520 354565 0.995128 + . ID=CGI_10014035; scaffold983 TRF Tandem_Repeat 354520 354565 92 + . . scaffold983 GLEAN mRNA 359846 360196 0.995128 + . ID=CGI_10014035; scaffold983 WUBlastX LINE_CR1 359846 360196 95 + . . scaffold1803 GLEAN mRNA 4274 4329 0.760367 + . ID=CGI_10014037; scaffold1803 TRF Tandem_Repeat 4274 4329 94 + . . scaffold1803 GLEAN mRNA 14343 14379 0.760367 + . ID=CGI_10014037; scaffold1803 TRF Tandem_Repeat 14343 14379 74 + . . scaffold1803 GLEAN mRNA 16950 16992 0.760367 + . ID=CGI_10014037; scaffold1803 TRF Tandem_Repeat 16950 16992 86 + . . scaffold1803 GLEAN mRNA 18548 18584 0.760367 + . ID=CGI_10014037; scaffold1803 TRF Tandem_Repeat 18548 18584 65 + . . scaffold1803 GLEAN mRNA 43873 43920 0.995479 - . ID=CGI_10014040; scaffold1803 TRF Tandem_Repeat 43873 43920 96 + . . scaffold1803 GLEAN mRNA 46618 46660 0.995479 - . ID=CGI_10014040; scaffold1803 TRF Tandem_Repeat 46618 46660 59 + . . scaffold1803 GLEAN mRNA 36764 37684 0.995479 - . ID=CGI_10014040; scaffold1803 WUBlastX LINE_RTE-X 36764 37684 194 - . . scaffold1803 GLEAN mRNA 73814 73861 0.971342 - . ID=CGI_10014042; scaffold1803 TRF Tandem_Repeat 73814 73861 89 + . . scaffold1803 GLEAN mRNA 98866 98968 1 + . ID=CGI_10014044; scaffold1803 TRF Tandem_Repeat 98866 98968 84 + . . scaffold1803 GLEAN mRNA 131231 131298 0.427868 + . ID=CGI_10014047; scaffold1803 TRF Tandem_Repeat 131231 131298 118 + . . scaffold1803 GLEAN mRNA 243886 243939 1 + . ID=CGI_10014051; scaffold1803 TRF Tandem_Repeat 243886 243939 63 + . . scaffold1803 GLEAN mRNA 243892 243939 1 + . ID=CGI_10014051; scaffold1803 TRF Tandem_Repeat 243892 243939 69 + . . scaffold1803 GLEAN mRNA 280881 280922 0.999395 - . ID=CGI_10014054; scaffold1803 TRF Tandem_Repeat 280881 280922 84 + . . scaffold1803 GLEAN mRNA 302818 302893 0.819004 + . ID=CGI_10014056; scaffold1803 TRF Tandem_Repeat 302818 302893 131 + . . scaffold1803 GLEAN mRNA 315609 315640 0.819004 + . ID=CGI_10014056; scaffold1803 TRF Tandem_Repeat 315609 315640 55 + . . scaffold1803 GLEAN mRNA 326934 326965 0.52048 + . ID=CGI_10014057; scaffold1803 TRF Tandem_Repeat 326934 326965 64 + . . scaffold1803 GLEAN mRNA 344577 344691 0.936276 - . ID=CGI_10014058; scaffold1803 TRF Tandem_Repeat 344577 344691 90 + . . scaffold1803 GLEAN mRNA 344543 344673 0.936276 - . ID=CGI_10014058; scaffold1803 TRF Tandem_Repeat 344543 344673 112 + . . scaffold1803 GLEAN mRNA 344557 344736 0.936276 - . ID=CGI_10014058; scaffold1803 TRF Tandem_Repeat 344557 344736 124 + . . scaffold1803 GLEAN mRNA 346974 347079 0.936276 - . ID=CGI_10014058; scaffold1803 TRF Tandem_Repeat 346974 347079 81 + . . scaffold1803 GLEAN mRNA 349249 349383 0.936276 - . ID=CGI_10014058; scaffold1803 TRF Tandem_Repeat 349249 349383 98 + . . scaffold1803 GLEAN mRNA 349267 349397 0.936276 - . ID=CGI_10014058; scaffold1803 TRF Tandem_Repeat 349267 349397 112 + . . scaffold1803 GLEAN mRNA 357244 357291 0.777732 + . ID=CGI_10014059; scaffold1803 TRF Tandem_Repeat 357244 357291 55 + . . scaffold1803 GLEAN mRNA 368876 368910 0.777732 + . ID=CGI_10014059; scaffold1803 TRF Tandem_Repeat 368876 368910 70 + . . scaffold754 GLEAN mRNA 41018 41061 0.401358 + . ID=CGI_10014062; scaffold754 TRF Tandem_Repeat 41018 41061 88 + . . scaffold754 GLEAN mRNA 35415 36332 0.401358 + . ID=CGI_10014062; scaffold754 WUBlastX DNA_Academ 35415 36332 374 + . . scaffold754 GLEAN mRNA 45063 45380 0.401358 + . ID=CGI_10014062; scaffold754 WUBlastX LINE_L2 45063 45380 111 + . . scaffold754 GLEAN mRNA 44092 45081 0.401358 + . ID=CGI_10014062; scaffold754 WUBlastX LINE_L2 44092 45081 360 + . . scaffold754 GLEAN mRNA 46790 47005 0.401358 + . ID=CGI_10014062; scaffold754 WUBlastX LINE_L2 46790 47728 220 + . . scaffold754 GLEAN mRNA 141008 141676 1 - . ID=CGI_10014067; scaffold754 WUBlastX DNA_IS4EU 141008 141676 47 + . . scaffold754 GLEAN mRNA 140686 140859 1 - . ID=CGI_10014067; scaffold754 WUBlastX DNA_IS4EU 140686 140859 45 + . . scaffold754 GLEAN mRNA 140996 141523 1 - . ID=CGI_10014067; scaffold754 WUBlastX DNA_IS4EU 140996 141523 173 + . . scaffold754 GLEAN mRNA 140903 141508 1 - . ID=CGI_10014067; scaffold754 WUBlastX DNA_Kolobok-IS4 140903 141508 157 + . . scaffold754 GLEAN mRNA 155237 155285 1 - . ID=CGI_10014069; scaffold754 TRF Tandem_Repeat 155237 155285 98 + . . scaffold754 GLEAN mRNA 165761 165795 1 - . ID=CGI_10014071; scaffold754 TRF Tandem_Repeat 165761 165795 70 + . . scaffold754 GLEAN mRNA 174802 174833 1 - . ID=CGI_10014072; scaffold754 TRF Tandem_Repeat 174802 174833 64 + . . scaffold754 GLEAN mRNA 183533 183585 1 - . ID=CGI_10014073; scaffold754 TRF Tandem_Repeat 183533 183585 76 + . . scaffold754 GLEAN mRNA 183539 183586 1 - . ID=CGI_10014073; scaffold754 TRF Tandem_Repeat 183539 183586 60 + . . scaffold754 GLEAN mRNA 207128 207197 1 + . ID=CGI_10014075; scaffold754 TRF Tandem_Repeat 207128 207197 140 + . . scaffold754 GLEAN mRNA 298119 298219 0.99935 + . ID=CGI_10014079; scaffold754 TRF Tandem_Repeat 298119 298219 159 + . . scaffold754 GLEAN mRNA 314559 317626 1 + . ID=CGI_10014080; scaffold754 TRF Tandem_Repeat 314559 317626 2327 + . . scaffold754 GLEAN mRNA 340172 340225 0.341505 - . ID=CGI_10014081; scaffold754 TRF Tandem_Repeat 340172 340225 108 + . . scaffold754 GLEAN mRNA 343824 343858 0.341505 - . ID=CGI_10014081; scaffold754 TRF Tandem_Repeat 343824 343858 61 + . . scaffold754 GLEAN mRNA 344999 345048 0.341505 - . ID=CGI_10014081; scaffold754 TRF Tandem_Repeat 344999 345048 64 + . . scaffold754 GLEAN mRNA 344998 345041 0.341505 - . ID=CGI_10014081; scaffold754 TRF Tandem_Repeat 344998 345041 52 + . . scaffold754 GLEAN mRNA 345218 346228 0.341505 - . ID=CGI_10014081; scaffold754 TRF Tandem_Repeat 345218 346228 1559 + . . scaffold754 GLEAN mRNA 384371 384408 0.889672 - . ID=CGI_10014085; scaffold754 TRF Tandem_Repeat 384371 384408 76 + . . scaffold162 GLEAN mRNA 52221 52271 0.362555 - . ID=CGI_10014088; scaffold162 TRF Tandem_Repeat 52221 52271 57 + . . scaffold162 GLEAN mRNA 52220 52267 0.362555 - . ID=CGI_10014088; scaffold162 TRF Tandem_Repeat 52220 52267 51 + . . scaffold162 GLEAN mRNA 57932 58069 0.362555 - . ID=CGI_10014088; scaffold162 TRF Tandem_Repeat 57932 58069 147 + . . scaffold162 GLEAN mRNA 57933 58068 0.362555 - . ID=CGI_10014088; scaffold162 TRF Tandem_Repeat 57933 58068 79 + . . scaffold162 GLEAN mRNA 59978 60370 0.362555 - . ID=CGI_10014088; scaffold162 TRF Tandem_Repeat 59978 60370 786 + . . scaffold162 GLEAN mRNA 61271 61305 0.362555 - . ID=CGI_10014088; scaffold162 TRF Tandem_Repeat 61271 61305 70 + . . scaffold162 GLEAN mRNA 51995 52219 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_L1 51995 52219 94 - . . scaffold162 GLEAN mRNA 54512 55393 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_RTE-X 54512 55393 397 + . . scaffold162 GLEAN mRNA 55581 55922 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_RTE-X 55581 55922 64 + . . scaffold162 GLEAN mRNA 53859 54092 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_RTE-X 53859 54092 132 + . . scaffold162 GLEAN mRNA 50132 50389 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_L1-Tx1 50132 50389 24 - . . scaffold162 GLEAN mRNA 53772 54086 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_RTE-X 53772 54086 100 + . . scaffold162 GLEAN mRNA 51201 52019 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_L1-Tx1 51201 52019 469 - . . scaffold162 GLEAN mRNA 51947 52180 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_L1-Tx1 51947 52180 172 - . . scaffold162 GLEAN mRNA 54314 55303 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_RTE-X 54314 55303 151 + . . scaffold162 GLEAN mRNA 50658 52097 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_L1-Tx1 50658 52097 207 - . . scaffold162 GLEAN mRNA 53005 53100 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_L2 53005 53100 30 - . . scaffold162 GLEAN mRNA 54515 55552 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_RTE-X 54515 55552 309 + . . scaffold162 GLEAN mRNA 50374 50583 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_L1-Tx1 50374 50583 39 - . . scaffold162 GLEAN mRNA 55629 55859 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_RTE-X 55629 55859 64 + . . scaffold162 GLEAN mRNA 72882 73172 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LTR_Gypsy 72882 73172 61 - . . scaffold162 GLEAN mRNA 73002 73175 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LTR_Gypsy-Cigr 73002 73175 68 - . . scaffold162 GLEAN mRNA 129248 129280 0.510942 - . ID=CGI_10014090; scaffold162 TRF Tandem_Repeat 129248 129280 66 + . . scaffold162 GLEAN mRNA 130600 130626 0.510942 - . ID=CGI_10014090; scaffold162 TRF Tandem_Repeat 130600 130626 54 + . . scaffold162 GLEAN mRNA 129879 130352 0.510942 - . ID=CGI_10014090; scaffold162 WUBlastX LINE_L1-Tx1 129879 130352 136 - . . scaffold162 GLEAN mRNA 137313 137432 0.510942 - . ID=CGI_10014090; scaffold162 TRF Tandem_Repeat 137313 137432 114 + . . scaffold162 GLEAN mRNA 139291 139409 0.510942 - . ID=CGI_10014090; scaffold162 TRF Tandem_Repeat 139291 139409 82 + . . scaffold162 GLEAN mRNA 148366 148409 0.510942 - . ID=CGI_10014090; scaffold162 TRF Tandem_Repeat 148366 148409 88 + . . scaffold162 GLEAN mRNA 148366 148409 1 + . ID=CGI_10014091; scaffold162 TRF Tandem_Repeat 148366 148409 88 + . . scaffold162 GLEAN mRNA 262596 262627 0.643433 - . ID=CGI_10014094; scaffold162 TRF Tandem_Repeat 262596 262627 64 + . . scaffold162 GLEAN mRNA 266289 266344 0.643433 - . ID=CGI_10014094; scaffold162 TRF Tandem_Repeat 266289 266344 76 + . . scaffold162 GLEAN mRNA 267713 267760 0.643433 - . ID=CGI_10014094; scaffold162 TRF Tandem_Repeat 267713 267760 51 + . . scaffold162 GLEAN mRNA 270808 271023 0.643433 - . ID=CGI_10014094; scaffold162 WUBlastX LTR_Gypsy 270808 271023 127 - . . scaffold162 GLEAN mRNA 271400 273580 0.643433 - . ID=CGI_10014094; scaffold162 WUBlastX LTR_Gypsy 271400 273580 1254 - . . scaffold162 GLEAN mRNA 270802 271191 0.643433 - . ID=CGI_10014094; scaffold162 WUBlastX LTR_Gypsy 270802 271191 122 - . . scaffold162 GLEAN mRNA 271251 271403 0.643433 - . ID=CGI_10014094; scaffold162 WUBlastX LTR_Gypsy 271251 271403 63 - . . scaffold162 GLEAN mRNA 271307 271792 0.643433 - . ID=CGI_10014094; scaffold162 WUBlastX LTR_Gypsy 271307 271792 117 - . . scaffold162 GLEAN mRNA 276242 276838 0.643433 - . ID=CGI_10014094; scaffold162 WUBlastX LTR_Gypsy 276242 276838 121 - . . scaffold162 GLEAN mRNA 271221 271409 0.643433 - . ID=CGI_10014094; scaffold162 WUBlastX LTR_Gypsy 271221 271409 58 - . . scaffold162 GLEAN mRNA 347070 347120 0.999916 + . ID=CGI_10014103; scaffold162 TRF Tandem_Repeat 347070 347120 102 + . . scaffold162 GLEAN mRNA 365348 365503 0.297644 - . ID=CGI_10014105; scaffold162 TRF Tandem_Repeat 365348 365503 102 + . . scaffold162 GLEAN mRNA 375079 375219 0.297644 - . ID=CGI_10014105; scaffold162 TRF Tandem_Repeat 375079 375219 158 + . . scaffold162 GLEAN mRNA 384522 384916 0.297644 - . ID=CGI_10014105; scaffold162 TRF Tandem_Repeat 384522 384916 502 + . . scaffold43932 GLEAN mRNA 50928 51365 0.999897 + . ID=CGI_10014108; scaffold43932 TRF Tandem_Repeat 50928 51365 398 + . . scaffold43932 GLEAN mRNA 52615 52775 0.999897 + . ID=CGI_10014108; scaffold43932 TRF Tandem_Repeat 52615 52775 250 + . . scaffold43932 GLEAN mRNA 67022 67065 0.999674 + . ID=CGI_10014109; scaffold43932 TRF Tandem_Repeat 67022 67065 72 + . . scaffold43932 GLEAN mRNA 67111 67893 0.999674 + . ID=CGI_10014109; scaffold43932 TRF Tandem_Repeat 67111 67893 902 + . . scaffold43932 GLEAN mRNA 68852 68998 0.999674 + . ID=CGI_10014109; scaffold43932 TRF Tandem_Repeat 68852 68998 73 + . . scaffold43932 GLEAN mRNA 68914 69043 0.999674 + . ID=CGI_10014109; scaffold43932 TRF Tandem_Repeat 68914 69043 93 + . . scaffold43932 GLEAN mRNA 78105 78320 0.999991 + . ID=CGI_10014110; scaffold43932 WUBlastX LINE_L2 78105 78320 22 + . . scaffold43932 GLEAN mRNA 78335 78634 0.999991 + . ID=CGI_10014110; scaffold43932 WUBlastX LINE_L2 78335 78634 68 + . . scaffold43932 GLEAN mRNA 140910 141437 0.999999 - . ID=CGI_10014117; scaffold43932 TRF Tandem_Repeat 140910 141437 648 + . . scaffold43932 GLEAN mRNA 143744 143768 0.999999 - . ID=CGI_10014117; scaffold43932 TRF Tandem_Repeat 143744 143768 50 + . . scaffold43932 GLEAN mRNA 149450 149615 0.999607 + . ID=CGI_10014118; scaffold43932 TRF Tandem_Repeat 149450 149615 149 + . . scaffold43932 GLEAN mRNA 149429 149636 0.999607 + . ID=CGI_10014118; scaffold43932 TRF Tandem_Repeat 149429 149636 362 + . . scaffold43932 GLEAN mRNA 150273 150529 0.999607 + . ID=CGI_10014118; scaffold43932 TRF Tandem_Repeat 150273 150529 264 + . . scaffold43932 GLEAN mRNA 150273 150465 0.999607 + . ID=CGI_10014118; scaffold43932 TRF Tandem_Repeat 150273 150465 165 + . . scaffold43932 GLEAN mRNA 191409 192149 0.993526 + . ID=CGI_10014122; scaffold43932 WUBlastX DNA_TcMar-Tc2 191409 192149 132 + . . scaffold43932 GLEAN mRNA 192630 192917 0.993526 + . ID=CGI_10014122; scaffold43932 WUBlastX DNA_TcMar-Tc2 192630 192917 40 + . . scaffold43932 GLEAN mRNA 187304 188233 0.993526 + . ID=CGI_10014122; scaffold43932 WUBlastX DNA_Crypton 187304 188233 225 + . . scaffold43932 GLEAN mRNA 190890 191042 0.993526 + . ID=CGI_10014122; scaffold43932 WUBlastX DNA_TcMar-Tc2 190890 191042 64 + . . scaffold43932 GLEAN mRNA 234126 234315 0.999351 - . ID=CGI_10014124; scaffold43932 TRF Tandem_Repeat 234126 234315 199 + . . scaffold43932 GLEAN mRNA 256387 256426 0.999351 - . ID=CGI_10014124; scaffold43932 TRF Tandem_Repeat 256387 256426 80 + . . scaffold43932 GLEAN mRNA 267150 267583 0.999351 - . ID=CGI_10014124; scaffold43932 TRF Tandem_Repeat 267150 267583 382 + . . scaffold43932 GLEAN mRNA 269138 269174 0.999351 - . ID=CGI_10014124; scaffold43932 TRF Tandem_Repeat 269138 269174 74 + . . scaffold43932 GLEAN mRNA 313620 313973 0.99992 + . ID=CGI_10014126; scaffold43932 WUBlastX LTR_Gypsy 313620 313973 21 + . . scaffold43932 GLEAN mRNA 337356 337404 0.999946 + . ID=CGI_10014129; scaffold43932 TRF Tandem_Repeat 337356 337404 62 + . . scaffold43932 GLEAN mRNA 361520 361559 0.888376 - . ID=CGI_10014131; scaffold43932 TRF Tandem_Repeat 361520 361559 80 + . . scaffold43932 GLEAN mRNA 373050 373181 0.888376 - . ID=CGI_10014131; scaffold43932 TRF Tandem_Repeat 373050 373181 74 + . . scaffold43932 GLEAN mRNA 366445 367881 0.888376 - . ID=CGI_10014131; scaffold43932 WUBlastX DNA_En-Spm 366445 367881 855 - . . scaffold43932 GLEAN mRNA 366187 368007 0.888376 - . ID=CGI_10014131; scaffold43932 WUBlastX DNA_En-Spm 366187 368007 808 - . . scaffold440 GLEAN mRNA 167105 167159 0.544847 + . ID=CGI_10014136; scaffold440 TRF Tandem_Repeat 167105 167159 103 + . . scaffold440 GLEAN mRNA 170025 170431 0.544847 + . ID=CGI_10014136; scaffold440 TRF Tandem_Repeat 170025 170431 391 + . . scaffold440 GLEAN mRNA 170043 170423 0.544847 + . ID=CGI_10014136; scaffold440 TRF Tandem_Repeat 170043 170423 501 + . . scaffold440 GLEAN mRNA 290443 290479 0.999351 + . ID=CGI_10014144; scaffold440 TRF Tandem_Repeat 290443 290479 74 + . . scaffold440 GLEAN mRNA 286174 286659 0.999351 + . ID=CGI_10014144; scaffold440 WUBlastX LTR_Gypsy 286174 286659 76 + . . scaffold440 GLEAN mRNA 285956 286162 0.999351 + . ID=CGI_10014144; scaffold440 WUBlastX LTR_Gypsy 285956 286162 145 + . . scaffold440 GLEAN mRNA 286171 286473 0.999351 + . ID=CGI_10014144; scaffold440 WUBlastX LTR_Gypsy 286171 286473 114 + . . scaffold440 GLEAN mRNA 296948 296999 0.999351 + . ID=CGI_10014144; scaffold440 TRF Tandem_Repeat 296948 296999 86 + . . scaffold440 GLEAN mRNA 301671 302423 0.999351 + . ID=CGI_10014144; scaffold440 TRF Tandem_Repeat 301671 302423 1051 + . . scaffold440 GLEAN mRNA 301671 302420 0.999351 + . ID=CGI_10014144; scaffold440 TRF Tandem_Repeat 301671 302420 1028 + . . scaffold440 GLEAN mRNA 304988 305013 0.999351 + . ID=CGI_10014144; scaffold440 TRF Tandem_Repeat 304988 305013 52 + . . scaffold440 GLEAN mRNA 305151 305893 0.999351 + . ID=CGI_10014144; scaffold440 TRF Tandem_Repeat 305151 305893 849 + . . scaffold440 GLEAN mRNA 305059 305868 0.999351 + . ID=CGI_10014144; scaffold440 TRF Tandem_Repeat 305059 305868 836 + . . scaffold440 GLEAN mRNA 306985 307060 0.999351 + . ID=CGI_10014144; scaffold440 TRF Tandem_Repeat 306985 307060 52 + . . scaffold43940 GLEAN mRNA 8825 8889 1 - . ID=CGI_10014147; scaffold43940 TRF Tandem_Repeat 8825 8889 112 + . . scaffold43940 GLEAN mRNA 24346 24703 0.999931 + . ID=CGI_10014148; scaffold43940 TRF Tandem_Repeat 24346 24703 420 + . . scaffold43940 GLEAN mRNA 24346 24703 0.999931 + . ID=CGI_10014148; scaffold43940 TRF Tandem_Repeat 24346 24703 467 + . . scaffold43940 GLEAN mRNA 71564 72142 0.808068 + . ID=CGI_10014150; scaffold43940 TRF Tandem_Repeat 71564 72142 600 + . . scaffold43940 GLEAN mRNA 73387 74730 0.808068 + . ID=CGI_10014150; scaffold43940 TRF Tandem_Repeat 73387 74730 2460 + . . scaffold43940 GLEAN mRNA 75452 75843 0.808068 + . ID=CGI_10014150; scaffold43940 TRF Tandem_Repeat 75452 75843 649 + . . scaffold43940 GLEAN mRNA 75452 76443 0.808068 + . ID=CGI_10014150; scaffold43940 TRF Tandem_Repeat 75452 76443 804 + . . scaffold43940 GLEAN mRNA 75938 76443 0.808068 + . ID=CGI_10014150; scaffold43940 TRF Tandem_Repeat 75938 76443 739 + . . scaffold43940 GLEAN mRNA 79103 79426 0.808068 + . ID=CGI_10014150; scaffold43940 WUBlastX RC_Helitron 79103 79426 34 - . . scaffold43940 GLEAN mRNA 104254 104388 0.996749 + . ID=CGI_10014152; scaffold43940 TRF Tandem_Repeat 104254 104388 225 + . . scaffold43940 GLEAN mRNA 106775 107281 0.996749 + . ID=CGI_10014152; scaffold43940 TRF Tandem_Repeat 106775 107281 538 + . . scaffold43940 GLEAN mRNA 106798 107262 0.996749 + . ID=CGI_10014152; scaffold43940 TRF Tandem_Repeat 106798 107262 623 + . . scaffold43940 GLEAN mRNA 108652 108907 0.996749 + . ID=CGI_10014152; scaffold43940 TRF Tandem_Repeat 108652 108907 415 + . . scaffold43940 GLEAN mRNA 132573 132633 0.999673 - . ID=CGI_10014153; scaffold43940 TRF Tandem_Repeat 132573 132633 95 + . . scaffold43940 GLEAN mRNA 207093 207274 0.17425 - . ID=CGI_10014158; scaffold43940 TRF Tandem_Repeat 207093 207274 283 + . . scaffold43940 GLEAN mRNA 209962 210118 0.17425 - . ID=CGI_10014158; scaffold43940 TRF Tandem_Repeat 209962 210118 133 + . . scaffold43940 GLEAN mRNA 219604 220050 0.17425 - . ID=CGI_10014158; scaffold43940 TRF Tandem_Repeat 219604 220050 779 + . . scaffold43940 GLEAN mRNA 220639 221054 0.17425 - . ID=CGI_10014158; scaffold43940 TRF Tandem_Repeat 220639 221054 388 + . . scaffold43940 GLEAN mRNA 226327 226991 0.17425 - . ID=CGI_10014158; scaffold43940 TRF Tandem_Repeat 226327 226991 927 + . . scaffold43940 GLEAN mRNA 228390 228588 0.17425 - . ID=CGI_10014158; scaffold43940 TRF Tandem_Repeat 228390 228588 150 + . . scaffold43940 GLEAN mRNA 230204 231342 0.17425 - . ID=CGI_10014158; scaffold43940 TRF Tandem_Repeat 230204 231342 1751 + . . scaffold43940 GLEAN mRNA 232812 233045 0.17425 - . ID=CGI_10014158; scaffold43940 TRF Tandem_Repeat 232812 233045 445 + . . scaffold43940 GLEAN mRNA 242062 242478 0.17425 - . ID=CGI_10014158; scaffold43940 TRF Tandem_Repeat 242062 242478 613 + . . scaffold43940 GLEAN mRNA 242561 243106 0.17425 - . ID=CGI_10014158; scaffold43940 TRF Tandem_Repeat 242561 243106 806 + . . scaffold43940 GLEAN mRNA 245734 245826 0.17425 - . ID=CGI_10014158; scaffold43940 TRF Tandem_Repeat 245734 245826 132 + . . scaffold43940 GLEAN mRNA 272853 272884 0.989276 - . ID=CGI_10014159; scaffold43940 TRF Tandem_Repeat 272853 272884 64 + . . scaffold43940 GLEAN mRNA 274123 274168 0.989276 - . ID=CGI_10014159; scaffold43940 TRF Tandem_Repeat 274123 274168 92 + . . scaffold43940 GLEAN mRNA 274656 274731 0.989276 - . ID=CGI_10014159; scaffold43940 TRF Tandem_Repeat 274656 274731 152 + . . scaffold43940 GLEAN mRNA 279813 279849 0.989276 - . ID=CGI_10014159; scaffold43940 TRF Tandem_Repeat 279813 279849 65 + . . scaffold43940 GLEAN mRNA 280700 280744 0.989276 - . ID=CGI_10014159; scaffold43940 TRF Tandem_Repeat 280700 280744 90 + . . scaffold43940 GLEAN mRNA 282241 282275 0.989276 - . ID=CGI_10014159; scaffold43940 TRF Tandem_Repeat 282241 282275 70 + . . scaffold43940 GLEAN mRNA 285361 285806 0.989276 - . ID=CGI_10014159; scaffold43940 TRF Tandem_Repeat 285361 285806 840 + . . scaffold43940 GLEAN mRNA 286183 286623 0.989276 - . ID=CGI_10014159; scaffold43940 TRF Tandem_Repeat 286183 286623 502 + . . scaffold43940 GLEAN mRNA 285361 285806 0.753918 + . ID=CGI_10014160; scaffold43940 TRF Tandem_Repeat 285361 285806 840 + . . scaffold43940 GLEAN mRNA 286183 286623 0.753918 + . ID=CGI_10014160; scaffold43940 TRF Tandem_Repeat 286183 286623 502 + . . scaffold43940 GLEAN mRNA 305998 306120 0.985282 + . ID=CGI_10014161; scaffold43940 TRF Tandem_Repeat 305998 306120 119 + . . scaffold43940 GLEAN mRNA 299886 299960 0.985282 + . ID=CGI_10014161; scaffold43940 WUBlastX LINE_L1-Tx1 299886 299960 33 - . . scaffold43940 GLEAN mRNA 300004 300186 0.985282 + . ID=CGI_10014161; scaffold43940 WUBlastX LINE_L1-Tx1 300004 300186 47 - . . scaffold43940 GLEAN mRNA 324047 324172 1 - . ID=CGI_10014162; scaffold43940 TRF Tandem_Repeat 324047 324172 234 + . . scaffold43940 GLEAN mRNA 327481 327664 1 - . ID=CGI_10014162; scaffold43940 TRF Tandem_Repeat 327481 327664 359 + . . scaffold43940 GLEAN mRNA 328159 328330 1 - . ID=CGI_10014162; scaffold43940 TRF Tandem_Repeat 328159 328330 274 + . . scaffold43940 GLEAN mRNA 328336 328510 1 - . ID=CGI_10014162; scaffold43940 TRF Tandem_Repeat 328336 328510 149 + . . scaffold43940 GLEAN mRNA 334984 335250 1 - . ID=CGI_10014162; scaffold43940 WUBlastX LINE_RTE-X 334984 335250 49 - . . scaffold43940 GLEAN mRNA 334827 334925 1 - . ID=CGI_10014162; scaffold43940 WUBlastX LINE_RTE-X 334827 334925 43 - . . scaffold43940 GLEAN mRNA 344259 344321 1 - . ID=CGI_10014162; scaffold43940 TRF Tandem_Repeat 344259 344321 126 + . . scaffold631 GLEAN mRNA 676 961 0.999376 + . ID=CGI_10014165; scaffold631 TRF Tandem_Repeat 676 961 473 + . . scaffold631 GLEAN mRNA 1408 1594 0.999376 + . ID=CGI_10014165; scaffold631 TRF Tandem_Repeat 1408 1594 302 + . . scaffold631 GLEAN mRNA 3488 3516 0.999376 + . ID=CGI_10014165; scaffold631 TRF Tandem_Repeat 3488 3516 58 + . . scaffold631 GLEAN mRNA 6293 6338 0.999376 + . ID=CGI_10014165; scaffold631 TRF Tandem_Repeat 6293 6338 92 + . . scaffold631 GLEAN mRNA 6388 6437 0.999376 + . ID=CGI_10014165; scaffold631 TRF Tandem_Repeat 6388 6437 100 + . . scaffold631 GLEAN mRNA 16423 16465 1 - . ID=CGI_10014166; scaffold631 TRF Tandem_Repeat 16423 16465 86 + . . scaffold631 GLEAN mRNA 61280 61340 0.931607 + . ID=CGI_10014168; scaffold631 TRF Tandem_Repeat 61280 61340 122 + . . scaffold631 GLEAN mRNA 97206 97265 0.999624 - . ID=CGI_10014170; scaffold631 TRF Tandem_Repeat 97206 97265 57 + . . scaffold631 GLEAN mRNA 96791 97177 0.999624 - . ID=CGI_10014170; scaffold631 WUBlastX LINE_RTE-X 96791 97177 100 + . . scaffold631 GLEAN mRNA 96701 97156 0.999624 - . ID=CGI_10014170; scaffold631 WUBlastX LINE_RTE-X 96701 97156 69 + . . scaffold631 GLEAN mRNA 109739 109779 0.999624 - . ID=CGI_10014170; scaffold631 TRF Tandem_Repeat 109739 109779 64 + . . scaffold631 GLEAN mRNA 114585 114626 0.999624 - . ID=CGI_10014170; scaffold631 TRF Tandem_Repeat 114585 114626 84 + . . scaffold631 GLEAN mRNA 116222 116420 0.999624 - . ID=CGI_10014170; scaffold631 TRF Tandem_Repeat 116222 116420 220 + . . scaffold631 GLEAN mRNA 116222 116413 0.999624 - . ID=CGI_10014170; scaffold631 TRF Tandem_Repeat 116222 116413 287 + . . scaffold631 GLEAN mRNA 136097 136128 0.831917 - . ID=CGI_10014172; scaffold631 TRF Tandem_Repeat 136097 136128 64 + . . scaffold631 GLEAN mRNA 137304 137351 0.831917 - . ID=CGI_10014172; scaffold631 TRF Tandem_Repeat 137304 137351 96 + . . scaffold631 GLEAN mRNA 132779 133171 0.831917 - . ID=CGI_10014172; scaffold631 WUBlastX LINE_CR1 132779 133171 28 - . . scaffold631 GLEAN mRNA 132674 133078 0.831917 - . ID=CGI_10014172; scaffold631 WUBlastX LINE_L2 132674 133078 90 - . . scaffold631 GLEAN mRNA 133273 133326 0.831917 - . ID=CGI_10014172; scaffold631 WUBlastX LINE_L2 133273 133326 23 - . . scaffold631 GLEAN mRNA 132779 133087 0.831917 - . ID=CGI_10014172; scaffold631 WUBlastX LINE_L2 132779 133087 111 - . . scaffold631 GLEAN mRNA 132599 133069 0.831917 - . ID=CGI_10014172; scaffold631 WUBlastX LINE_CR1-L2 132599 133069 43 - . . scaffold631 GLEAN mRNA 164607 164703 0.731167 - . ID=CGI_10014173; scaffold631 TRF Tandem_Repeat 164607 164703 185 + . . scaffold631 GLEAN mRNA 166064 166280 0.731167 - . ID=CGI_10014173; scaffold631 TRF Tandem_Repeat 166064 166280 168 + . . scaffold631 GLEAN mRNA 166064 166280 0.731167 - . ID=CGI_10014173; scaffold631 TRF Tandem_Repeat 166064 166280 197 + . . scaffold631 GLEAN mRNA 168284 169291 0.731167 - . ID=CGI_10014173; scaffold631 TRF Tandem_Repeat 168284 169291 1236 + . . scaffold631 GLEAN mRNA 192811 192845 0.999675 - . ID=CGI_10014175; scaffold631 TRF Tandem_Repeat 192811 192845 61 + . . scaffold631 GLEAN mRNA 199021 199321 0.999675 - . ID=CGI_10014175; scaffold631 TRF Tandem_Repeat 199021 199321 286 + . . scaffold631 GLEAN mRNA 202491 202603 0.51066 - . ID=CGI_10014176; scaffold631 TRF Tandem_Repeat 202491 202603 84 + . . scaffold631 GLEAN mRNA 204968 205072 0.51066 - . ID=CGI_10014176; scaffold631 TRF Tandem_Repeat 204968 205072 104 + . . scaffold631 GLEAN mRNA 205468 205561 0.51066 - . ID=CGI_10014176; scaffold631 TRF Tandem_Repeat 205468 205561 127 + . . scaffold631 GLEAN mRNA 208426 208471 0.51066 - . ID=CGI_10014176; scaffold631 TRF Tandem_Repeat 208426 208471 92 + . . scaffold631 GLEAN mRNA 211337 211588 0.654708 + . ID=CGI_10014177; scaffold631 TRF Tandem_Repeat 211337 211588 409 + . . scaffold631 GLEAN mRNA 220342 221146 0.970776 - . ID=CGI_10014178; scaffold631 TRF Tandem_Repeat 220342 221146 1312 + . . scaffold631 GLEAN mRNA 224978 225652 0.970776 - . ID=CGI_10014178; scaffold631 WUBlastX LINE_RTE-X 224978 225652 140 + . . scaffold631 GLEAN mRNA 224940 225005 0.970776 - . ID=CGI_10014178; scaffold631 WUBlastX LINE_RTE-X 224940 225005 42 + . . scaffold631 GLEAN mRNA 224578 224931 0.970776 - . ID=CGI_10014178; scaffold631 WUBlastX LINE_RTE-X 224578 224931 31 + . . scaffold631 GLEAN mRNA 224656 224961 0.970776 - . ID=CGI_10014178; scaffold631 WUBlastX LINE_RTE-X 224656 224961 69 + . . scaffold631 GLEAN mRNA 224650 224889 0.970776 - . ID=CGI_10014178; scaffold631 WUBlastX LINE_RTE-X 224650 224889 87 + . . scaffold631 GLEAN mRNA 246313 246363 0.998241 + . ID=CGI_10014179; scaffold631 TRF Tandem_Repeat 246313 246363 102 + . . scaffold631 GLEAN mRNA 308400 308519 1 - . ID=CGI_10014186; scaffold631 TRF Tandem_Repeat 308400 308519 222 + . . scaffold631 GLEAN mRNA 314264 316999 0.99846 - . ID=CGI_10014187; scaffold631 WUBlastX LINE_RTE-X 314264 317551 813 - . . scaffold631 GLEAN mRNA 314147 314899 0.99846 - . ID=CGI_10014187; scaffold631 WUBlastX LINE_RTE-X 314147 314899 70 - . . scaffold631 GLEAN mRNA 363816 364101 0.0587318 + . ID=CGI_10014192; scaffold631 TRF Tandem_Repeat 363816 364101 344 + . . scaffold631 GLEAN mRNA 364727 365391 0.0587318 + . ID=CGI_10014192; scaffold631 TRF Tandem_Repeat 364727 365391 303 + . . scaffold631 GLEAN mRNA 364719 365338 0.0587318 + . ID=CGI_10014192; scaffold631 TRF Tandem_Repeat 364719 365338 395 + . . scaffold631 GLEAN mRNA 364727 365391 0.0587318 + . ID=CGI_10014192; scaffold631 TRF Tandem_Repeat 364727 365391 364 + . . scaffold631 GLEAN mRNA 366392 366445 0.0587318 + . ID=CGI_10014192; scaffold631 TRF Tandem_Repeat 366392 366445 81 + . . scaffold631 GLEAN mRNA 367898 367933 0.0587318 + . ID=CGI_10014192; scaffold631 TRF Tandem_Repeat 367898 367933 72 + . . scaffold631 GLEAN mRNA 368312 368361 0.0587318 + . ID=CGI_10014192; scaffold631 TRF Tandem_Repeat 368312 368361 75 + . . scaffold631 GLEAN mRNA 378431 378497 0.0587318 + . ID=CGI_10014192; scaffold631 TRF Tandem_Repeat 378431 378497 71 + . . scaffold753 GLEAN mRNA 1435 1494 0.99977 + . ID=CGI_10014193; scaffold753 TRF Tandem_Repeat 1435 1494 84 + . . scaffold753 GLEAN mRNA 60223 60840 0.958809 + . ID=CGI_10014195; scaffold753 TRF Tandem_Repeat 60223 60840 844 + . . scaffold753 GLEAN mRNA 63784 64117 0.958809 + . ID=CGI_10014195; scaffold753 TRF Tandem_Repeat 63784 64117 524 + . . scaffold753 GLEAN mRNA 64088 64498 0.958809 + . ID=CGI_10014195; scaffold753 TRF Tandem_Repeat 64088 64498 467 + . . scaffold753 GLEAN mRNA 64076 64498 0.958809 + . ID=CGI_10014195; scaffold753 TRF Tandem_Repeat 64076 64498 514 + . . scaffold753 GLEAN mRNA 51984 52337 0.958809 + . ID=CGI_10014195; scaffold753 WUBlastX LINE_CR1 51984 52337 154 + . . scaffold753 GLEAN mRNA 53500 53679 0.958809 + . ID=CGI_10014195; scaffold753 WUBlastX LINE_L2 53500 53679 47 + . . scaffold753 GLEAN mRNA 52047 52328 0.958809 + . ID=CGI_10014195; scaffold753 WUBlastX LINE_CR1 52047 52328 210 + . . scaffold753 GLEAN mRNA 51885 52325 0.958809 + . ID=CGI_10014195; scaffold753 WUBlastX LINE_L1 51885 52325 54 + . . scaffold753 GLEAN mRNA 53699 54055 0.958809 + . ID=CGI_10014195; scaffold753 WUBlastX LINE_CR1-L2 53699 54055 81 + . . scaffold753 GLEAN mRNA 66563 66915 0.958809 + . ID=CGI_10014195; scaffold753 TRF Tandem_Repeat 66563 66915 591 + . . scaffold753 GLEAN mRNA 131468 131771 0.575697 - . ID=CGI_10014199; scaffold753 TRF Tandem_Repeat 131468 131771 408 + . . scaffold753 GLEAN mRNA 132570 132998 0.575697 - . ID=CGI_10014199; scaffold753 TRF Tandem_Repeat 132570 132998 516 + . . scaffold753 GLEAN mRNA 132586 132983 0.575697 - . ID=CGI_10014199; scaffold753 TRF Tandem_Repeat 132586 132983 510 + . . scaffold753 GLEAN mRNA 139409 140033 0.575697 - . ID=CGI_10014199; scaffold753 TRF Tandem_Repeat 139409 140033 950 + . . scaffold753 GLEAN mRNA 142061 142108 0.575697 - . ID=CGI_10014199; scaffold753 TRF Tandem_Repeat 142061 142108 96 + . . scaffold753 GLEAN mRNA 143082 144385 0.575697 - . ID=CGI_10014199; scaffold753 TRF Tandem_Repeat 143082 144385 2011 + . . scaffold753 GLEAN mRNA 144555 144597 0.575697 - . ID=CGI_10014199; scaffold753 TRF Tandem_Repeat 144555 144597 50 + . . scaffold753 GLEAN mRNA 131468 131771 0.34159 + . ID=CGI_10014200; scaffold753 TRF Tandem_Repeat 131468 131771 408 + . . scaffold753 GLEAN mRNA 132570 132998 0.34159 + . ID=CGI_10014200; scaffold753 TRF Tandem_Repeat 132570 132998 516 + . . scaffold753 GLEAN mRNA 132586 132983 0.34159 + . ID=CGI_10014200; scaffold753 TRF Tandem_Repeat 132586 132983 510 + . . scaffold753 GLEAN mRNA 139409 140033 0.34159 + . ID=CGI_10014200; scaffold753 TRF Tandem_Repeat 139409 140033 950 + . . scaffold753 GLEAN mRNA 142061 142108 0.34159 + . ID=CGI_10014200; scaffold753 TRF Tandem_Repeat 142061 142108 96 + . . scaffold753 GLEAN mRNA 143082 144385 0.34159 + . ID=CGI_10014200; scaffold753 TRF Tandem_Repeat 143082 144385 2011 + . . scaffold753 GLEAN mRNA 144555 144597 0.34159 + . ID=CGI_10014200; scaffold753 TRF Tandem_Repeat 144555 144597 50 + . . scaffold753 GLEAN mRNA 165546 165608 0.74078 + . ID=CGI_10014201; scaffold753 TRF Tandem_Repeat 165546 165608 126 + . . scaffold753 GLEAN mRNA 168195 168251 0.74078 + . ID=CGI_10014201; scaffold753 TRF Tandem_Repeat 168195 168251 98 + . . scaffold753 GLEAN mRNA 175963 176003 0.74078 + . ID=CGI_10014201; scaffold753 TRF Tandem_Repeat 175963 176003 82 + . . scaffold753 GLEAN mRNA 184752 184789 0.999572 - . ID=CGI_10014202; scaffold753 TRF Tandem_Repeat 184752 184789 58 + . . scaffold753 GLEAN mRNA 216259 216373 0.499527 + . ID=CGI_10014205; scaffold753 TRF Tandem_Repeat 216259 216373 106 + . . scaffold753 GLEAN mRNA 305120 305293 0.999228 + . ID=CGI_10014209; scaffold753 WUBlastX DNA_hAT 305120 305293 53 + . . scaffold753 GLEAN mRNA 305695 306210 0.999228 + . ID=CGI_10014209; scaffold753 WUBlastX DNA_hAT 305695 306210 57 + . . scaffold753 GLEAN mRNA 320986 321023 0.499275 + . ID=CGI_10014210; scaffold753 TRF Tandem_Repeat 320986 321023 76 + . . scaffold753 GLEAN mRNA 313191 316439 0.499275 + . ID=CGI_10014210; scaffold753 WUBlastX LINE_RTE-X 313191 316439 986 - . . scaffold753 GLEAN mRNA 316608 317237 0.499275 + . ID=CGI_10014210; scaffold753 WUBlastX LINE_L1 316608 317237 244 - . . scaffold753 GLEAN mRNA 316632 317348 0.499275 + . ID=CGI_10014210; scaffold753 WUBlastX LINE_L1 316632 317348 54 - . . scaffold753 GLEAN mRNA 313050 313820 0.499275 + . ID=CGI_10014210; scaffold753 WUBlastX LINE_RTE-X 313050 313820 175 - . . scaffold753 GLEAN mRNA 316110 316721 0.499275 + . ID=CGI_10014210; scaffold753 WUBlastX LINE_CR1 316110 316721 33 - . . scaffold753 GLEAN mRNA 334285 334321 0.653552 + . ID=CGI_10014211; scaffold753 TRF Tandem_Repeat 334285 334321 53 + . . scaffold753 GLEAN mRNA 334606 335058 0.653552 + . ID=CGI_10014211; scaffold753 TRF Tandem_Repeat 334606 335058 519 + . . scaffold753 GLEAN mRNA 334607 335058 0.653552 + . ID=CGI_10014211; scaffold753 TRF Tandem_Repeat 334607 335058 552 + . . scaffold753 GLEAN mRNA 334607 335058 0.653552 + . ID=CGI_10014211; scaffold753 TRF Tandem_Repeat 334607 335058 602 + . . scaffold753 GLEAN mRNA 335691 335887 0.653552 + . ID=CGI_10014211; scaffold753 TRF Tandem_Repeat 335691 335887 250 + . . scaffold753 GLEAN mRNA 335691 335886 0.653552 + . ID=CGI_10014211; scaffold753 TRF Tandem_Repeat 335691 335886 239 + . . scaffold753 GLEAN mRNA 344951 345012 0.994247 + . ID=CGI_10014212; scaffold753 TRF Tandem_Repeat 344951 345012 90 + . . scaffold753 GLEAN mRNA 346233 347483 0.994247 + . ID=CGI_10014212; scaffold753 TRF Tandem_Repeat 346233 347483 1746 + . . scaffold753 GLEAN mRNA 364806 365089 0.99969 + . ID=CGI_10014214; scaffold753 TRF Tandem_Repeat 364806 365089 523 + . . scaffold753 GLEAN mRNA 366867 367050 0.99969 + . ID=CGI_10014214; scaffold753 TRF Tandem_Repeat 366867 367050 206 + . . scaffold753 GLEAN mRNA 367984 368167 0.99969 + . ID=CGI_10014214; scaffold753 TRF Tandem_Repeat 367984 368167 206 + . . scaffold753 GLEAN mRNA 369119 370148 0.99969 + . ID=CGI_10014214; scaffold753 TRF Tandem_Repeat 369119 370148 1366 + . . scaffold753 GLEAN mRNA 369119 370141 0.99969 + . ID=CGI_10014214; scaffold753 TRF Tandem_Repeat 369119 370141 1283 + . . scaffold753 GLEAN mRNA 369119 370141 0.99969 + . ID=CGI_10014214; scaffold753 TRF Tandem_Repeat 369119 370141 1328 + . . scaffold753 GLEAN mRNA 370855 371209 0.99969 + . ID=CGI_10014214; scaffold753 TRF Tandem_Repeat 370855 371209 487 + . . scaffold753 GLEAN mRNA 372301 372632 0.99969 + . ID=CGI_10014214; scaffold753 TRF Tandem_Repeat 372301 372632 400 + . . scaffold447 GLEAN mRNA 20533 21710 0.995957 + . ID=CGI_10014216; scaffold447 TRF Tandem_Repeat 20533 21710 1646 + . . scaffold447 GLEAN mRNA 31638 31925 0.995957 + . ID=CGI_10014216; scaffold447 TRF Tandem_Repeat 31638 31925 264 + . . scaffold447 GLEAN mRNA 29590 29898 0.995957 + . ID=CGI_10014216; scaffold447 WUBlastX LINE_L1 29590 29898 45 + . . scaffold447 GLEAN mRNA 29440 29808 0.995957 + . ID=CGI_10014216; scaffold447 WUBlastX LINE_L1-Tx1 29440 29808 45 + . . scaffold447 GLEAN mRNA 29362 29811 0.995957 + . ID=CGI_10014216; scaffold447 WUBlastX LINE_L1-Tx1 29362 29811 27 + . . scaffold447 GLEAN mRNA 33359 33394 0.995957 + . ID=CGI_10014216; scaffold447 TRF Tandem_Repeat 33359 33394 63 + . . scaffold447 GLEAN mRNA 54919 54967 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 54919 54967 98 + . . scaffold447 GLEAN mRNA 60815 61314 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 60815 61314 348 + . . scaffold447 GLEAN mRNA 60815 60942 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 60815 60942 85 + . . scaffold447 GLEAN mRNA 61025 61189 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 61025 61189 84 + . . scaffold447 GLEAN mRNA 61016 61154 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 61016 61154 107 + . . scaffold447 GLEAN mRNA 61223 61307 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 61223 61307 65 + . . scaffold447 GLEAN mRNA 61234 61307 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 61234 61307 67 + . . scaffold447 GLEAN mRNA 63126 63770 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 63126 63770 369 + . . scaffold447 GLEAN mRNA 63126 63760 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 63126 63760 453 + . . scaffold447 GLEAN mRNA 63126 63343 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 63126 63343 150 + . . scaffold447 GLEAN mRNA 63426 63757 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 63426 63757 90 + . . scaffold447 GLEAN mRNA 63423 63544 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 63423 63544 127 + . . scaffold447 GLEAN mRNA 63629 63760 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 63629 63760 68 + . . scaffold447 GLEAN mRNA 63942 63999 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 63942 63999 53 + . . scaffold447 GLEAN mRNA 64356 64829 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 64356 64829 94 + . . scaffold447 GLEAN mRNA 64638 64744 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 64638 64744 65 + . . scaffold447 GLEAN mRNA 64677 64742 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 64677 64742 51 + . . scaffold447 GLEAN mRNA 64661 64811 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 64661 64811 152 + . . scaffold447 GLEAN mRNA 144851 145213 0.928588 - . ID=CGI_10014219; scaffold447 TRF Tandem_Repeat 144851 145213 575 + . . scaffold447 GLEAN mRNA 145179 145347 0.928588 - . ID=CGI_10014219; scaffold447 TRF Tandem_Repeat 145179 145347 118 + . . scaffold447 GLEAN mRNA 145939 146122 0.928588 - . ID=CGI_10014219; scaffold447 TRF Tandem_Repeat 145939 146122 111 + . . scaffold447 GLEAN mRNA 145939 146093 0.928588 - . ID=CGI_10014219; scaffold447 TRF Tandem_Repeat 145939 146093 125 + . . scaffold447 GLEAN mRNA 145956 146162 0.928588 - . ID=CGI_10014219; scaffold447 TRF Tandem_Repeat 145956 146162 175 + . . scaffold447 GLEAN mRNA 154535 154586 0.928588 - . ID=CGI_10014219; scaffold447 TRF Tandem_Repeat 154535 154586 77 + . . scaffold447 GLEAN mRNA 163007 163330 0.928588 - . ID=CGI_10014219; scaffold447 TRF Tandem_Repeat 163007 163330 252 + . . scaffold447 GLEAN mRNA 172374 172732 0.980509 + . ID=CGI_10014220; scaffold447 TRF Tandem_Repeat 172374 172732 560 + . . scaffold447 GLEAN mRNA 184039 184306 1 - . ID=CGI_10014222; scaffold447 TRF Tandem_Repeat 184039 184306 244 + . . scaffold447 GLEAN mRNA 184127 184314 1 - . ID=CGI_10014222; scaffold447 TRF Tandem_Repeat 184127 184314 331 + . . scaffold447 GLEAN mRNA 185924 186004 1 - . ID=CGI_10014222; scaffold447 TRF Tandem_Repeat 185924 186004 103 + . . scaffold447 GLEAN mRNA 186256 186299 1 - . ID=CGI_10014222; scaffold447 TRF Tandem_Repeat 186256 186299 61 + . . scaffold447 GLEAN mRNA 187185 187284 1 - . ID=CGI_10014222; scaffold447 TRF Tandem_Repeat 187185 187284 107 + . . scaffold447 GLEAN mRNA 187186 187284 1 - . ID=CGI_10014222; scaffold447 TRF Tandem_Repeat 187186 187284 128 + . . scaffold447 GLEAN mRNA 221864 222679 0.990731 + . ID=CGI_10014225; scaffold447 WUBlastX DNA_Harbinger 221864 222679 317 - . . scaffold447 GLEAN mRNA 238786 239032 0.702385 + . ID=CGI_10014227; scaffold447 TRF Tandem_Repeat 238786 239032 255 + . . scaffold447 GLEAN mRNA 305282 305332 0.44783 - . ID=CGI_10014231; scaffold447 TRF Tandem_Repeat 305282 305332 66 + . . scaffold447 GLEAN mRNA 305283 305321 0.44783 - . ID=CGI_10014231; scaffold447 TRF Tandem_Repeat 305283 305321 51 + . . scaffold447 GLEAN mRNA 337298 337948 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_CR1 337298 337948 34 - . . scaffold447 GLEAN mRNA 335448 335516 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 335448 335516 40 - . . scaffold447 GLEAN mRNA 335522 335719 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 335522 335719 100 - . . scaffold447 GLEAN mRNA 335710 335952 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 335710 335952 247 - . . scaffold447 GLEAN mRNA 335952 336188 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 335952 336188 281 - . . scaffold447 GLEAN mRNA 336200 337837 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 336200 337837 1477 - . . scaffold447 GLEAN mRNA 335477 335734 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 335477 335734 65 - . . scaffold447 GLEAN mRNA 335418 335522 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_Rex-Babar 335418 335522 27 - . . scaffold447 GLEAN mRNA 336177 336248 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-BovB 336177 336248 22 - . . scaffold447 GLEAN mRNA 334408 334446 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-X 334408 334446 22 - . . scaffold447 GLEAN mRNA 370011 370308 0.81168 + . ID=CGI_10014236; scaffold447 TRF Tandem_Repeat 370011 370308 264 + . . scaffold447 GLEAN mRNA 371884 371979 0.81168 + . ID=CGI_10014236; scaffold447 TRF Tandem_Repeat 371884 371979 84 + . . scaffold447 GLEAN mRNA 390373 390483 0.81168 + . ID=CGI_10014236; scaffold447 WUBlastX LINE_RTE-X 390373 390483 51 + . . scaffold1838 GLEAN mRNA 10021 10308 0.999948 + . ID=CGI_10014237; scaffold1838 TRF Tandem_Repeat 10021 10308 416 + . . scaffold1838 GLEAN mRNA 21288 21378 0.544261 + . ID=CGI_10014238; scaffold1838 TRF Tandem_Repeat 21288 21378 83 + . . scaffold1838 GLEAN mRNA 21284 21396 0.544261 + . ID=CGI_10014238; scaffold1838 TRF Tandem_Repeat 21284 21396 199 + . . scaffold1838 GLEAN mRNA 61078 61103 0.999522 - . ID=CGI_10014241; scaffold1838 TRF Tandem_Repeat 61078 61103 52 + . . scaffold1838 GLEAN mRNA 82232 82290 1 + . ID=CGI_10014242; scaffold1838 TRF Tandem_Repeat 82232 82290 111 + . . scaffold1838 GLEAN mRNA 99587 99646 0.499812 + . ID=CGI_10014243; scaffold1838 TRF Tandem_Repeat 99587 99646 57 + . . scaffold1838 GLEAN mRNA 99022 99558 0.499812 + . ID=CGI_10014243; scaffold1838 WUBlastX LINE_RTE-X 99022 99558 125 + . . scaffold1838 GLEAN mRNA 191810 191839 1 + . ID=CGI_10014250; scaffold1838 TRF Tandem_Repeat 191810 191839 60 + . . scaffold1838 GLEAN mRNA 211093 211137 0.990769 + . ID=CGI_10014252; scaffold1838 TRF Tandem_Repeat 211093 211137 90 + . . scaffold1838 GLEAN mRNA 220624 220669 1 - . ID=CGI_10014253; scaffold1838 TRF Tandem_Repeat 220624 220669 92 + . . scaffold1838 GLEAN mRNA 239242 239275 0.836238 + . ID=CGI_10014256; scaffold1838 TRF Tandem_Repeat 239242 239275 68 + . . scaffold1838 GLEAN mRNA 255042 255069 0.958276 - . ID=CGI_10014258; scaffold1838 TRF Tandem_Repeat 255042 255069 56 + . . scaffold1838 GLEAN mRNA 301400 301468 0.432861 + . ID=CGI_10014260; scaffold1838 TRF Tandem_Repeat 301400 301468 138 + . . scaffold1838 GLEAN mRNA 312016 313508 0.972482 + . ID=CGI_10014261; scaffold1838 TRF Tandem_Repeat 312016 313508 1864 + . . scaffold1838 GLEAN mRNA 340466 340525 0.563165 + . ID=CGI_10014264; scaffold1838 TRF Tandem_Repeat 340466 340525 120 + . . scaffold1838 GLEAN mRNA 343410 343546 0.563165 + . ID=CGI_10014264; scaffold1838 TRF Tandem_Repeat 343410 343546 130 + . . scaffold1838 GLEAN mRNA 335834 336778 0.563165 + . ID=CGI_10014264; scaffold1838 WUBlastX LINE_L2 335834 336778 141 - . . scaffold1838 GLEAN mRNA 335846 336583 0.563165 + . ID=CGI_10014264; scaffold1838 WUBlastX LINE_RTE-X 335846 336583 324 - . . scaffold1838 GLEAN mRNA 335735 336367 0.563165 + . ID=CGI_10014264; scaffold1838 WUBlastX LINE_RTE-X 335735 336367 187 - . . scaffold1838 GLEAN mRNA 333962 335248 0.563165 + . ID=CGI_10014264; scaffold1838 WUBlastX LINE_RTE-X 333962 335248 461 - . . scaffold1838 GLEAN mRNA 335507 336361 0.563165 + . ID=CGI_10014264; scaffold1838 WUBlastX LINE_L2 335507 336361 96 - . . scaffold1838 GLEAN mRNA 365215 367605 0.631432 + . ID=CGI_10014266; scaffold1838 WUBlastX LINE_RTE-X 365215 367605 397 + . . scaffold1838 GLEAN mRNA 365710 367221 0.631432 + . ID=CGI_10014266; scaffold1838 WUBlastX LINE_RTE-X 365710 367221 424 + . . scaffold1838 GLEAN mRNA 364181 364489 0.631432 + . ID=CGI_10014266; scaffold1838 WUBlastX LINE_Proto2 364181 364489 55 + . . scaffold1838 GLEAN mRNA 364280 364492 0.631432 + . ID=CGI_10014266; scaffold1838 WUBlastX LINE_Proto2 364280 364492 60 + . . scaffold1838 GLEAN mRNA 364606 367227 0.631432 + . ID=CGI_10014266; scaffold1838 WUBlastX LINE_Proto2 364606 367227 360 + . . scaffold1838 GLEAN mRNA 378808 378876 0.593383 - . ID=CGI_10014269; scaffold1838 TRF Tandem_Repeat 378808 378876 138 + . . scaffold1838 GLEAN mRNA 381964 382032 0.593383 - . ID=CGI_10014269; scaffold1838 TRF Tandem_Repeat 381964 382032 138 + . . scaffold1719 GLEAN mRNA 106199 106383 0.73542 - . ID=CGI_10014272; scaffold1719 TRF Tandem_Repeat 106199 106383 171 + . . scaffold1719 GLEAN mRNA 129369 129590 0.990769 - . ID=CGI_10014274; scaffold1719 TRF Tandem_Repeat 129369 129590 374 + . . scaffold1719 GLEAN mRNA 150602 150653 0.999988 - . ID=CGI_10014276; scaffold1719 TRF Tandem_Repeat 150602 150653 104 + . . scaffold1719 GLEAN mRNA 164300 164334 1 - . ID=CGI_10014277; scaffold1719 TRF Tandem_Repeat 164300 164334 70 + . . scaffold1719 GLEAN mRNA 178963 179030 0.99732 - . ID=CGI_10014281; scaffold1719 TRF Tandem_Repeat 178963 179030 136 + . . scaffold1719 GLEAN mRNA 183404 183435 0.99732 - . ID=CGI_10014281; scaffold1719 TRF Tandem_Repeat 183404 183435 64 + . . scaffold1719 GLEAN mRNA 189838 190485 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Gypsy 189838 190485 92 + . . scaffold1719 GLEAN mRNA 190659 190697 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Gypsy 190659 190697 30 + . . scaffold1719 GLEAN mRNA 189943 190461 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Gypsy 189943 190461 169 + . . scaffold1719 GLEAN mRNA 197525 197824 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 197525 197824 204 - . . scaffold1719 GLEAN mRNA 197845 198120 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 197845 198120 84 - . . scaffold1719 GLEAN mRNA 197178 197282 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 197178 197282 28 - . . scaffold1719 GLEAN mRNA 198439 198582 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 198439 198582 38 - . . scaffold1719 GLEAN mRNA 198627 198857 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 198627 198857 60 - . . scaffold1719 GLEAN mRNA 198487 198609 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 198487 198609 65 - . . scaffold1719 GLEAN mRNA 196886 197155 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 196886 197155 81 - . . scaffold1719 GLEAN mRNA 197175 197252 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 197175 197252 52 - . . scaffold1719 GLEAN mRNA 197444 197848 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 197444 197848 120 - . . scaffold1719 GLEAN mRNA 196546 196887 0.99732 - . ID=CGI_10014281; scaffold1719 WUBlastX LTR_Ngaro 196546 196887 86 - . . scaffold1719 GLEAN mRNA 220764 220868 0.999311 - . ID=CGI_10014283; scaffold1719 TRF Tandem_Repeat 220764 220868 92 + . . scaffold1719 GLEAN mRNA 229085 229205 0.999311 - . ID=CGI_10014283; scaffold1719 TRF Tandem_Repeat 229085 229205 172 + . . scaffold1719 GLEAN mRNA 232082 232372 0.999311 - . ID=CGI_10014283; scaffold1719 TRF Tandem_Repeat 232082 232372 421 + . . scaffold1719 GLEAN mRNA 245384 245566 0.999311 - . ID=CGI_10014283; scaffold1719 TRF Tandem_Repeat 245384 245566 266 + . . scaffold1719 GLEAN mRNA 299322 299370 0.889105 - . ID=CGI_10014286; scaffold1719 TRF Tandem_Repeat 299322 299370 98 + . . scaffold1719 GLEAN mRNA 301128 301163 0.889105 - . ID=CGI_10014286; scaffold1719 TRF Tandem_Repeat 301128 301163 54 + . . scaffold1719 GLEAN mRNA 309455 309500 0.889105 - . ID=CGI_10014286; scaffold1719 TRF Tandem_Repeat 309455 309500 92 + . . scaffold1719 GLEAN mRNA 312056 312252 0.889105 - . ID=CGI_10014286; scaffold1719 TRF Tandem_Repeat 312056 312252 132 + . . scaffold1719 GLEAN mRNA 316620 316925 0.889105 - . ID=CGI_10014286; scaffold1719 WUBlastX LINE_RTE-X 316620 316925 57 - . . scaffold1719 GLEAN mRNA 316221 316313 0.889105 - . ID=CGI_10014286; scaffold1719 WUBlastX LINE_RTE-X 316221 316313 32 - . . scaffold1719 GLEAN mRNA 316460 316744 0.889105 - . ID=CGI_10014286; scaffold1719 WUBlastX LINE_RTE-X 316460 316744 28 - . . scaffold1719 GLEAN mRNA 338192 338886 0.988977 + . ID=CGI_10014289; scaffold1719 TRF Tandem_Repeat 338192 338886 821 + . . scaffold1719 GLEAN mRNA 338192 338886 0.988977 + . ID=CGI_10014289; scaffold1719 TRF Tandem_Repeat 338192 338886 766 + . . scaffold1719 GLEAN mRNA 350216 350686 0.93598 + . ID=CGI_10014290; scaffold1719 TRF Tandem_Repeat 350216 350686 385 + . . scaffold1719 GLEAN mRNA 350216 350695 0.93598 + . ID=CGI_10014290; scaffold1719 TRF Tandem_Repeat 350216 350695 482 + . . scaffold1719 GLEAN mRNA 351908 352111 0.93598 + . ID=CGI_10014290; scaffold1719 TRF Tandem_Repeat 351908 352111 300 + . . scaffold1719 GLEAN mRNA 353137 353171 0.93598 + . ID=CGI_10014290; scaffold1719 TRF Tandem_Repeat 353137 353171 54 + . . scaffold1053 GLEAN mRNA 17465 17508 0.621486 - . ID=CGI_10014292; scaffold1053 TRF Tandem_Repeat 17465 17508 61 + . . scaffold1053 GLEAN mRNA 19562 20976 0.621486 - . ID=CGI_10014292; scaffold1053 TRF Tandem_Repeat 19562 20976 1147 + . . scaffold1053 GLEAN mRNA 19579 20976 0.621486 - . ID=CGI_10014292; scaffold1053 TRF Tandem_Repeat 19579 20976 1019 + . . scaffold1053 GLEAN mRNA 29672 29712 0.621486 - . ID=CGI_10014292; scaffold1053 TRF Tandem_Repeat 29672 29712 82 + . . scaffold1053 GLEAN mRNA 25832 26269 0.621486 - . ID=CGI_10014292; scaffold1053 WUBlastX LINE_Penelope 25832 26269 24 + . . scaffold1053 GLEAN mRNA 40500 40549 0.909113 + . ID=CGI_10014293; scaffold1053 TRF Tandem_Repeat 40500 40549 55 + . . scaffold1053 GLEAN mRNA 46267 46340 0.909113 + . ID=CGI_10014293; scaffold1053 TRF Tandem_Repeat 46267 46340 67 + . . scaffold1053 GLEAN mRNA 46266 46353 0.909113 + . ID=CGI_10014293; scaffold1053 TRF Tandem_Repeat 46266 46353 167 + . . scaffold1053 GLEAN mRNA 50380 50417 0.909113 + . ID=CGI_10014293; scaffold1053 TRF Tandem_Repeat 50380 50417 58 + . . scaffold1053 GLEAN mRNA 59415 59457 0.909113 + . ID=CGI_10014293; scaffold1053 TRF Tandem_Repeat 59415 59457 50 + . . scaffold1053 GLEAN mRNA 60813 60939 0.909113 + . ID=CGI_10014293; scaffold1053 TRF Tandem_Repeat 60813 60939 182 + . . scaffold1053 GLEAN mRNA 71810 71934 0.909113 + . ID=CGI_10014293; scaffold1053 TRF Tandem_Repeat 71810 71934 214 + . . scaffold1053 GLEAN mRNA 150687 151608 0.648402 - . ID=CGI_10014295; scaffold1053 TRF Tandem_Repeat 150687 151608 1192 + . . scaffold1053 GLEAN mRNA 151814 151845 0.648402 - . ID=CGI_10014295; scaffold1053 TRF Tandem_Repeat 151814 151845 55 + . . scaffold1053 GLEAN mRNA 232802 233333 0.97566 + . ID=CGI_10014296; scaffold1053 TRF Tandem_Repeat 232802 233333 839 + . . scaffold1053 GLEAN mRNA 234236 234868 0.97566 + . ID=CGI_10014296; scaffold1053 TRF Tandem_Repeat 234236 234868 615 + . . scaffold1053 GLEAN mRNA 234243 234868 0.97566 + . ID=CGI_10014296; scaffold1053 TRF Tandem_Repeat 234243 234868 735 + . . scaffold1053 GLEAN mRNA 234241 234868 0.97566 + . ID=CGI_10014296; scaffold1053 TRF Tandem_Repeat 234241 234868 802 + . . scaffold1053 GLEAN mRNA 240982 241043 0.97566 + . ID=CGI_10014296; scaffold1053 TRF Tandem_Repeat 240982 241043 90 + . . scaffold1053 GLEAN mRNA 254139 254223 0.856061 - . ID=CGI_10014297; scaffold1053 TRF Tandem_Repeat 254139 254223 152 + . . scaffold1053 GLEAN mRNA 309358 309419 0.830467 - . ID=CGI_10014298; scaffold1053 TRF Tandem_Repeat 309358 309419 70 + . . scaffold1053 GLEAN mRNA 318673 318824 0.830467 - . ID=CGI_10014298; scaffold1053 TRF Tandem_Repeat 318673 318824 177 + . . scaffold1053 GLEAN mRNA 318634 318818 0.830467 - . ID=CGI_10014298; scaffold1053 TRF Tandem_Repeat 318634 318818 158 + . . scaffold1053 GLEAN mRNA 319896 320246 0.830467 - . ID=CGI_10014298; scaffold1053 TRF Tandem_Repeat 319896 320246 214 + . . scaffold1053 GLEAN mRNA 319896 320248 0.830467 - . ID=CGI_10014298; scaffold1053 TRF Tandem_Repeat 319896 320248 251 + . . scaffold1053 GLEAN mRNA 319896 320249 0.830467 - . ID=CGI_10014298; scaffold1053 TRF Tandem_Repeat 319896 320249 184 + . . scaffold1053 GLEAN mRNA 328940 329182 0.830467 - . ID=CGI_10014298; scaffold1053 WUBlastX LINE_RTE-X 328940 329182 54 + . . scaffold1053 GLEAN mRNA 328725 328949 0.830467 - . ID=CGI_10014298; scaffold1053 WUBlastX LINE_RTE-X 328725 328949 48 + . . scaffold1053 GLEAN mRNA 328934 329065 0.830467 - . ID=CGI_10014298; scaffold1053 WUBlastX LINE_RTE-X 328934 329065 68 + . . scaffold1053 GLEAN mRNA 375965 376186 0.906567 - . ID=CGI_10014300; scaffold1053 TRF Tandem_Repeat 375965 376186 340 + . . scaffold737 GLEAN mRNA 19409 19541 0.998703 + . ID=CGI_10014301; scaffold737 TRF Tandem_Repeat 19409 19541 232 + . . scaffold737 GLEAN mRNA 42065 42100 0.999676 + . ID=CGI_10014304; scaffold737 TRF Tandem_Repeat 42065 42100 72 + . . scaffold737 GLEAN mRNA 55179 55216 0.370581 - . ID=CGI_10014305; scaffold737 TRF Tandem_Repeat 55179 55216 76 + . . scaffold737 GLEAN mRNA 59265 59297 0.370581 - . ID=CGI_10014305; scaffold737 TRF Tandem_Repeat 59265 59297 57 + . . scaffold737 GLEAN mRNA 131308 131351 0.525071 - . ID=CGI_10014310; scaffold737 TRF Tandem_Repeat 131308 131351 88 + . . scaffold737 GLEAN mRNA 135115 135153 0.525071 - . ID=CGI_10014310; scaffold737 TRF Tandem_Repeat 135115 135153 78 + . . scaffold737 GLEAN mRNA 193209 193392 0.624577 + . ID=CGI_10014313; scaffold737 TRF Tandem_Repeat 193209 193392 191 + . . scaffold737 GLEAN mRNA 212471 212524 0.997526 - . ID=CGI_10014314; scaffold737 TRF Tandem_Repeat 212471 212524 108 + . . scaffold737 GLEAN mRNA 221514 221572 0.997526 - . ID=CGI_10014314; scaffold737 TRF Tandem_Repeat 221514 221572 102 + . . scaffold737 GLEAN mRNA 224184 224254 0.997526 - . ID=CGI_10014314; scaffold737 TRF Tandem_Repeat 224184 224254 126 + . . scaffold737 GLEAN mRNA 282375 282407 0.998432 + . ID=CGI_10014316; scaffold737 TRF Tandem_Repeat 282375 282407 66 + . . scaffold737 GLEAN mRNA 294767 295024 0.807998 - . ID=CGI_10014317; scaffold737 WUBlastX LINE_L1 294767 295024 35 - . . scaffold737 GLEAN mRNA 294014 294955 0.807998 - . ID=CGI_10014317; scaffold737 WUBlastX LINE_L1-Tx1 294014 294955 142 - . . scaffold737 GLEAN mRNA 305595 305631 0.999871 - . ID=CGI_10014318; scaffold737 TRF Tandem_Repeat 305595 305631 74 + . . scaffold737 GLEAN mRNA 335408 335449 0.992082 + . ID=CGI_10014319; scaffold737 TRF Tandem_Repeat 335408 335449 84 + . . scaffold737 GLEAN mRNA 353887 353990 0.992082 + . ID=CGI_10014319; scaffold737 TRF Tandem_Repeat 353887 353990 73 + . . scaffold737 GLEAN mRNA 353596 354087 0.992082 + . ID=CGI_10014319; scaffold737 TRF Tandem_Repeat 353596 354087 442 + . . scaffold737 GLEAN mRNA 353596 354087 0.992082 + . ID=CGI_10014319; scaffold737 TRF Tandem_Repeat 353596 354087 496 + . . scaffold737 GLEAN mRNA 355965 356119 0.992082 + . ID=CGI_10014319; scaffold737 TRF Tandem_Repeat 355965 356119 129 + . . scaffold737 GLEAN mRNA 366368 366470 0.962357 - . ID=CGI_10014320; scaffold737 TRF Tandem_Repeat 366368 366470 188 + . . scaffold737 GLEAN mRNA 368800 369241 0.962357 - . ID=CGI_10014320; scaffold737 TRF Tandem_Repeat 368800 369241 679 + . . scaffold737 GLEAN mRNA 376721 376752 0.962357 - . ID=CGI_10014320; scaffold737 TRF Tandem_Repeat 376721 376752 64 + . . scaffold737 GLEAN mRNA 389243 389296 1 + . ID=CGI_10014321; scaffold737 TRF Tandem_Repeat 389243 389296 108 + . . scaffold1611 GLEAN mRNA 3681 3707 0.351466 - . ID=CGI_10014322; scaffold1611 TRF Tandem_Repeat 3681 3707 54 + . . scaffold1611 GLEAN mRNA 54808 54834 0.588517 + . ID=CGI_10014324; scaffold1611 TRF Tandem_Repeat 54808 54834 54 + . . scaffold1611 GLEAN mRNA 235477 235527 0.992087 - . ID=CGI_10014328; scaffold1611 TRF Tandem_Repeat 235477 235527 102 + . . scaffold1611 GLEAN mRNA 243419 243500 0.992087 - . ID=CGI_10014328; scaffold1611 TRF Tandem_Repeat 243419 243500 62 + . . scaffold1611 GLEAN mRNA 249859 249901 0.992087 - . ID=CGI_10014328; scaffold1611 TRF Tandem_Repeat 249859 249901 86 + . . scaffold1611 GLEAN mRNA 250226 250262 0.992087 - . ID=CGI_10014328; scaffold1611 TRF Tandem_Repeat 250226 250262 74 + . . scaffold1611 GLEAN mRNA 275911 275955 0.993128 - . ID=CGI_10014329; scaffold1611 TRF Tandem_Repeat 275911 275955 90 + . . scaffold1611 GLEAN mRNA 277696 278142 0.993128 - . ID=CGI_10014329; scaffold1611 TRF Tandem_Repeat 277696 278142 619 + . . scaffold1611 GLEAN mRNA 297896 297953 0.379952 + . ID=CGI_10014332; scaffold1611 TRF Tandem_Repeat 297896 297953 116 + . . scaffold1611 GLEAN mRNA 298475 298696 0.379952 + . ID=CGI_10014332; scaffold1611 TRF Tandem_Repeat 298475 298696 426 + . . scaffold1611 GLEAN mRNA 298746 298910 0.379952 + . ID=CGI_10014332; scaffold1611 TRF Tandem_Repeat 298746 298910 222 + . . scaffold1611 GLEAN mRNA 320745 320880 0.379952 + . ID=CGI_10014332; scaffold1611 TRF Tandem_Repeat 320745 320880 119 + . . scaffold1611 GLEAN mRNA 320736 320924 0.379952 + . ID=CGI_10014332; scaffold1611 TRF Tandem_Repeat 320736 320924 141 + . . scaffold1611 GLEAN mRNA 320763 320924 0.379952 + . ID=CGI_10014332; scaffold1611 TRF Tandem_Repeat 320763 320924 114 + . . scaffold1611 GLEAN mRNA 327979 328038 0.379952 + . ID=CGI_10014332; scaffold1611 TRF Tandem_Repeat 327979 328038 111 + . . scaffold1611 GLEAN mRNA 363715 363758 0.975667 + . ID=CGI_10014334; scaffold1611 TRF Tandem_Repeat 363715 363758 88 + . . scaffold1611 GLEAN mRNA 364953 365444 0.975667 + . ID=CGI_10014334; scaffold1611 WUBlastX DNA_TcMar-Fot1 364953 365444 83 - . . scaffold1611 GLEAN mRNA 365040 365453 0.975667 + . ID=CGI_10014334; scaffold1611 WUBlastX DNA_TcMar-Fot1 365040 365453 308 - . . scaffold1611 GLEAN mRNA 365470 366165 0.975667 + . ID=CGI_10014334; scaffold1611 WUBlastX DNA_TcMar-Fot1 365470 366165 420 - . . scaffold1327 GLEAN mRNA 88733 88964 0.88611 + . ID=CGI_10014336; scaffold1327 TRF Tandem_Repeat 88733 88964 401 + . . scaffold1327 GLEAN mRNA 93501 93536 0.88611 + . ID=CGI_10014336; scaffold1327 TRF Tandem_Repeat 93501 93536 72 + . . scaffold1327 GLEAN mRNA 94619 94831 0.88611 + . ID=CGI_10014336; scaffold1327 TRF Tandem_Repeat 94619 94831 277 + . . scaffold1327 GLEAN mRNA 97307 97356 0.88611 + . ID=CGI_10014336; scaffold1327 TRF Tandem_Repeat 97307 97356 57 + . . scaffold1327 GLEAN mRNA 99776 100322 0.88611 + . ID=CGI_10014336; scaffold1327 TRF Tandem_Repeat 99776 100322 713 + . . scaffold1327 GLEAN mRNA 100893 101053 0.88611 + . ID=CGI_10014336; scaffold1327 TRF Tandem_Repeat 100893 101053 231 + . . scaffold1327 GLEAN mRNA 103822 104027 0.88611 + . ID=CGI_10014336; scaffold1327 TRF Tandem_Repeat 103822 104027 412 + . . scaffold1327 GLEAN mRNA 106441 106839 0.88611 + . ID=CGI_10014336; scaffold1327 TRF Tandem_Repeat 106441 106839 629 + . . scaffold1327 GLEAN mRNA 118157 118228 0.579587 + . ID=CGI_10014337; scaffold1327 TRF Tandem_Repeat 118157 118228 144 + . . scaffold1327 GLEAN mRNA 123320 123578 0.579587 + . ID=CGI_10014337; scaffold1327 TRF Tandem_Repeat 123320 123578 284 + . . scaffold1327 GLEAN mRNA 123324 123510 0.579587 + . ID=CGI_10014337; scaffold1327 TRF Tandem_Repeat 123324 123510 190 + . . scaffold1327 GLEAN mRNA 128229 128590 0.999999 - . ID=CGI_10014338; scaffold1327 TRF Tandem_Repeat 128229 128590 393 + . . scaffold1327 GLEAN mRNA 128874 128915 0.999999 - . ID=CGI_10014338; scaffold1327 TRF Tandem_Repeat 128874 128915 84 + . . scaffold1327 GLEAN mRNA 135470 135683 0.999138 + . ID=CGI_10014339; scaffold1327 TRF Tandem_Repeat 135470 135683 198 + . . scaffold1327 GLEAN mRNA 145298 145449 0.999138 + . ID=CGI_10014339; scaffold1327 TRF Tandem_Repeat 145298 145449 125 + . . scaffold1327 GLEAN mRNA 167872 167927 0.802379 + . ID=CGI_10014340; scaffold1327 TRF Tandem_Repeat 167872 167927 60 + . . scaffold1327 GLEAN mRNA 167873 167934 0.802379 + . ID=CGI_10014340; scaffold1327 TRF Tandem_Repeat 167873 167934 63 + . . scaffold1327 GLEAN mRNA 169850 169914 0.802379 + . ID=CGI_10014340; scaffold1327 TRF Tandem_Repeat 169850 169914 130 + . . scaffold1327 GLEAN mRNA 170794 170821 0.802379 + . ID=CGI_10014340; scaffold1327 TRF Tandem_Repeat 170794 170821 56 + . . scaffold1327 GLEAN mRNA 193139 193205 0.600145 + . ID=CGI_10014341; scaffold1327 TRF Tandem_Repeat 193139 193205 53 + . . scaffold1327 GLEAN mRNA 195643 195685 0.600145 + . ID=CGI_10014341; scaffold1327 TRF Tandem_Repeat 195643 195685 86 + . . scaffold1327 GLEAN mRNA 193442 193636 0.600145 + . ID=CGI_10014341; scaffold1327 WUBlastX LINE_RTE-X 193442 193636 104 + . . scaffold1327 GLEAN mRNA 245986 246043 1 - . ID=CGI_10014344; scaffold1327 TRF Tandem_Repeat 245986 246043 116 + . . scaffold1327 GLEAN mRNA 273471 273600 0.863216 - . ID=CGI_10014345; scaffold1327 TRF Tandem_Repeat 273471 273600 62 + . . scaffold1327 GLEAN mRNA 273465 273620 0.863216 - . ID=CGI_10014345; scaffold1327 TRF Tandem_Repeat 273465 273620 303 + . . scaffold1327 GLEAN mRNA 278935 278960 0.863216 - . ID=CGI_10014345; scaffold1327 TRF Tandem_Repeat 278935 278960 52 + . . scaffold424 GLEAN mRNA 47470 48634 0.999605 - . ID=CGI_10014352; scaffold424 TRF Tandem_Repeat 47470 48634 1596 + . . scaffold424 GLEAN mRNA 53452 53487 0.999605 - . ID=CGI_10014352; scaffold424 TRF Tandem_Repeat 53452 53487 54 + . . scaffold424 GLEAN mRNA 64445 64570 0.999605 - . ID=CGI_10014352; scaffold424 WUBlastX LTR_Gypsy 64445 64606 24 - . . scaffold424 GLEAN mRNA 94951 95172 0.990391 - . ID=CGI_10014353; scaffold424 WUBlastX DNA_hAT-Ac 94951 95172 20 + . . scaffold424 GLEAN mRNA 95241 95372 0.990391 - . ID=CGI_10014353; scaffold424 WUBlastX DNA_hAT-Ac 95241 95372 35 + . . scaffold424 GLEAN mRNA 94421 94936 0.990391 - . ID=CGI_10014353; scaffold424 WUBlastX DNA_hAT-Ac 94421 94936 52 + . . scaffold424 GLEAN mRNA 95119 95166 0.990391 - . ID=CGI_10014353; scaffold424 WUBlastX DNA_hAT-Ac 95119 95166 24 + . . scaffold424 GLEAN mRNA 94424 94828 0.990391 - . ID=CGI_10014353; scaffold424 WUBlastX DNA_hAT-Ac 94424 94828 89 + . . scaffold424 GLEAN mRNA 98408 98461 0.990391 - . ID=CGI_10014353; scaffold424 TRF Tandem_Repeat 98408 98461 63 + . . scaffold424 GLEAN mRNA 125093 125746 0.999672 - . ID=CGI_10014354; scaffold424 WUBlastX DNA_Kolobok 125093 125746 51 - . . scaffold424 GLEAN mRNA 125057 125233 0.999672 - . ID=CGI_10014354; scaffold424 WUBlastX DNA_Kolobok-Hyd 125057 125233 51 - . . scaffold424 GLEAN mRNA 125537 125878 0.999672 - . ID=CGI_10014354; scaffold424 WUBlastX DNA_Kolobok-Hyd 125537 125878 69 - . . scaffold424 GLEAN mRNA 166197 166240 0.691951 + . ID=CGI_10014358; scaffold424 TRF Tandem_Repeat 166197 166240 88 + . . scaffold424 GLEAN mRNA 208881 208949 0.990151 - . ID=CGI_10014360; scaffold424 TRF Tandem_Repeat 208881 208949 84 + . . scaffold424 GLEAN mRNA 208881 208949 0.990151 - . ID=CGI_10014360; scaffold424 TRF Tandem_Repeat 208881 208949 93 + . . scaffold424 GLEAN mRNA 222070 222113 1 + . ID=CGI_10014361; scaffold424 TRF Tandem_Repeat 222070 222113 52 + . . scaffold424 GLEAN mRNA 222071 222132 1 + . ID=CGI_10014361; scaffold424 TRF Tandem_Repeat 222071 222132 62 + . . scaffold424 GLEAN mRNA 239240 239318 0.999973 - . ID=CGI_10014362; scaffold424 TRF Tandem_Repeat 239240 239318 86 + . . scaffold424 GLEAN mRNA 306174 306308 0.349394 - . ID=CGI_10014369; scaffold424 TRF Tandem_Repeat 306174 306308 252 + . . scaffold424 GLEAN mRNA 306180 306301 0.349394 - . ID=CGI_10014369; scaffold424 TRF Tandem_Repeat 306180 306301 70 + . . scaffold424 GLEAN mRNA 314281 314324 0.349394 - . ID=CGI_10014369; scaffold424 TRF Tandem_Repeat 314281 314324 56 + . . scaffold424 GLEAN mRNA 314281 314324 0.349394 - . ID=CGI_10014369; scaffold424 TRF Tandem_Repeat 314281 314324 56 + . . scaffold424 GLEAN mRNA 317589 317620 0.349394 - . ID=CGI_10014369; scaffold424 TRF Tandem_Repeat 317589 317620 64 + . . scaffold424 GLEAN mRNA 321659 321688 0.349394 - . ID=CGI_10014369; scaffold424 TRF Tandem_Repeat 321659 321688 51 + . . scaffold424 GLEAN mRNA 334465 334508 0.349394 - . ID=CGI_10014369; scaffold424 TRF Tandem_Repeat 334465 334508 70 + . . scaffold424 GLEAN mRNA 339304 339387 0.349394 - . ID=CGI_10014369; scaffold424 TRF Tandem_Repeat 339304 339387 152 + . . scaffold1462 GLEAN mRNA 138778 138903 0.382353 + . ID=CGI_10014372; scaffold1462 TRF Tandem_Repeat 138778 138903 173 + . . scaffold1462 GLEAN mRNA 146023 146049 0.382353 + . ID=CGI_10014372; scaffold1462 TRF Tandem_Repeat 146023 146049 54 + . . scaffold1462 GLEAN mRNA 134344 136353 0.382353 + . ID=CGI_10014372; scaffold1462 WUBlastX DNA_Zator 134344 136353 1133 + . . scaffold1462 GLEAN mRNA 137249 137395 0.382353 + . ID=CGI_10014372; scaffold1462 WUBlastX DNA_Zator 137249 137395 107 + . . scaffold1462 GLEAN mRNA 137492 138046 0.382353 + . ID=CGI_10014372; scaffold1462 WUBlastX DNA_Zator 137492 138046 101 + . . scaffold1462 GLEAN mRNA 158448 158558 0.382353 + . ID=CGI_10014372; scaffold1462 TRF Tandem_Repeat 158448 158558 138 + . . scaffold1462 GLEAN mRNA 159480 159701 0.382353 + . ID=CGI_10014372; scaffold1462 WUBlastX LINE_L2 159480 159701 117 - . . scaffold1462 GLEAN mRNA 159567 159752 0.382353 + . ID=CGI_10014372; scaffold1462 WUBlastX LINE_L2 159567 159752 104 - . . scaffold1462 GLEAN mRNA 159567 159827 0.382353 + . ID=CGI_10014372; scaffold1462 WUBlastX LINE_L2 159567 159827 25 - . . scaffold1462 GLEAN mRNA 159367 159561 0.382353 + . ID=CGI_10014372; scaffold1462 WUBlastX LINE_L2 159367 159561 71 - . . scaffold1462 GLEAN mRNA 229491 229547 1 + . ID=CGI_10014376; scaffold1462 TRF Tandem_Repeat 229491 229547 114 + . . scaffold1462 GLEAN mRNA 232997 233027 1 + . ID=CGI_10014376; scaffold1462 TRF Tandem_Repeat 232997 233027 62 + . . scaffold1462 GLEAN mRNA 233622 234602 1 + . ID=CGI_10014376; scaffold1462 TRF Tandem_Repeat 233622 234602 1179 + . . scaffold1462 GLEAN mRNA 255086 255113 1 + . ID=CGI_10014378; scaffold1462 TRF Tandem_Repeat 255086 255113 56 + . . scaffold1462 GLEAN mRNA 256402 257920 1 + . ID=CGI_10014378; scaffold1462 TRF Tandem_Repeat 256402 257920 2253 + . . scaffold1462 GLEAN mRNA 255595 257920 1 + . ID=CGI_10014378; scaffold1462 TRF Tandem_Repeat 255595 257920 2447 + . . scaffold1462 GLEAN mRNA 255579 257920 1 + . ID=CGI_10014378; scaffold1462 TRF Tandem_Repeat 255579 257920 2473 + . . scaffold1462 GLEAN mRNA 258090 258163 1 + . ID=CGI_10014378; scaffold1462 TRF Tandem_Repeat 258090 258163 69 + . . scaffold1462 GLEAN mRNA 306404 306730 0.999054 - . ID=CGI_10014383; scaffold1462 WUBlastX LINE_RTE-BovB 306404 306730 49 + . . scaffold1462 GLEAN mRNA 306724 306948 0.999054 - . ID=CGI_10014383; scaffold1462 WUBlastX LINE_RTE-BovB 306724 306948 90 + . . scaffold1462 GLEAN mRNA 306305 306391 0.999054 - . ID=CGI_10014383; scaffold1462 WUBlastX LINE_RTE-BovB 306305 306391 53 + . . scaffold1462 GLEAN mRNA 306593 306739 0.999054 - . ID=CGI_10014383; scaffold1462 WUBlastX LINE_RTE-BovB 306593 306739 70 + . . scaffold1462 GLEAN mRNA 325355 325408 0.999054 - . ID=CGI_10014383; scaffold1462 TRF Tandem_Repeat 325355 325408 99 + . . scaffold1462 GLEAN mRNA 326753 326793 0.999054 - . ID=CGI_10014383; scaffold1462 TRF Tandem_Repeat 326753 326793 82 + . . scaffold1462 GLEAN mRNA 355000 355048 0.995853 + . ID=CGI_10014386; scaffold1462 TRF Tandem_Repeat 355000 355048 50 + . . scaffold1462 GLEAN mRNA 348403 349026 0.995853 + . ID=CGI_10014386; scaffold1462 WUBlastX DNA_Maverick 348403 349026 409 - . . scaffold1462 GLEAN mRNA 359430 359543 0.995853 + . ID=CGI_10014386; scaffold1462 WUBlastX DNA_Harbinger 359430 359543 68 - . . scaffold1462 GLEAN mRNA 359533 359664 0.995853 + . ID=CGI_10014386; scaffold1462 WUBlastX DNA_Harbinger 359533 359664 32 - . . scaffold1462 GLEAN mRNA 373087 374090 0.995853 + . ID=CGI_10014386; scaffold1462 TRF Tandem_Repeat 373087 374090 1085 + . . scaffold1462 GLEAN mRNA 373075 374090 0.995853 + . ID=CGI_10014386; scaffold1462 TRF Tandem_Repeat 373075 374090 1892 + . . scaffold1462 GLEAN mRNA 367149 371852 0.995853 + . ID=CGI_10014386; scaffold1462 WUBlastX RC_Helitron 367149 371852 2664 - . . scaffold1462 GLEAN mRNA 372375 372995 0.995853 + . ID=CGI_10014386; scaffold1462 WUBlastX RC_Helitron 372375 372995 374 - . . scaffold1462 GLEAN mRNA 378762 378820 0.995853 + . ID=CGI_10014386; scaffold1462 TRF Tandem_Repeat 378762 378820 109 + . . scaffold1462 GLEAN mRNA 373087 374090 0.539656 - . ID=CGI_10014387; scaffold1462 TRF Tandem_Repeat 373087 374090 1085 + . . scaffold1462 GLEAN mRNA 373075 374090 0.539656 - . ID=CGI_10014387; scaffold1462 TRF Tandem_Repeat 373075 374090 1892 + . . scaffold1462 GLEAN mRNA 367149 371852 0.539656 - . ID=CGI_10014387; scaffold1462 WUBlastX RC_Helitron 367149 371852 2664 - . . scaffold1462 GLEAN mRNA 372375 372995 0.539656 - . ID=CGI_10014387; scaffold1462 WUBlastX RC_Helitron 372375 372995 374 - . . scaffold1462 GLEAN mRNA 396186 396497 0.759958 + . ID=CGI_10014389; scaffold1462 WUBlastX DNA_IS4EU 396186 396497 54 + . . scaffold1816 GLEAN mRNA 19422 19733 0.999372 + . ID=CGI_10014391; scaffold1816 WUBlastX DNA_TcMar-Tc1 19251 19733 78 + . . scaffold1816 GLEAN mRNA 19422 19745 0.999372 + . ID=CGI_10014391; scaffold1816 WUBlastX DNA_TcMar-Tc1 19038 19745 75 + . . scaffold1816 GLEAN mRNA 39562 39607 0.695555 + . ID=CGI_10014392; scaffold1816 TRF Tandem_Repeat 39562 39607 65 + . . scaffold1816 GLEAN mRNA 39660 39693 0.695555 + . ID=CGI_10014392; scaffold1816 TRF Tandem_Repeat 39660 39693 59 + . . scaffold1816 GLEAN mRNA 49368 49439 0.999586 - . ID=CGI_10014393; scaffold1816 TRF Tandem_Repeat 49368 49439 80 + . . scaffold1816 GLEAN mRNA 50384 50481 0.999586 - . ID=CGI_10014393; scaffold1816 TRF Tandem_Repeat 50384 50481 151 + . . scaffold1816 GLEAN mRNA 69747 70091 0.787173 - . ID=CGI_10014394; scaffold1816 TRF Tandem_Repeat 69747 70091 210 + . . scaffold1816 GLEAN mRNA 96570 96615 1 - . ID=CGI_10014397; scaffold1816 TRF Tandem_Repeat 96570 96615 67 + . . scaffold1816 GLEAN mRNA 99025 99049 1 - . ID=CGI_10014397; scaffold1816 TRF Tandem_Repeat 99025 99049 50 + . . scaffold1816 GLEAN mRNA 117805 117829 0.998785 + . ID=CGI_10014398; scaffold1816 TRF Tandem_Repeat 117805 117829 50 + . . scaffold1816 GLEAN mRNA 120392 120625 0.998785 + . ID=CGI_10014398; scaffold1816 WUBlastX RC_Helitron 120392 120625 49 + . . scaffold1816 GLEAN mRNA 120124 120390 0.998785 + . ID=CGI_10014398; scaffold1816 WUBlastX LINE_L2 120124 120390 38 + . . scaffold1816 GLEAN mRNA 120106 120333 0.998785 + . ID=CGI_10014398; scaffold1816 WUBlastX LINE_L2 120106 120333 46 + . . scaffold1816 GLEAN mRNA 206738 206765 0.819371 + . ID=CGI_10014402; scaffold1816 TRF Tandem_Repeat 206738 206765 56 + . . scaffold1816 GLEAN mRNA 206919 206943 0.819371 + . ID=CGI_10014402; scaffold1816 TRF Tandem_Repeat 206919 206943 50 + . . scaffold1816 GLEAN mRNA 208183 208353 0.819371 + . ID=CGI_10014402; scaffold1816 WUBlastX DNA_Kolobok 208183 208353 32 + . . scaffold1816 GLEAN mRNA 209255 209371 0.819371 + . ID=CGI_10014402; scaffold1816 WUBlastX DNA_Kolobok 209255 209371 43 + . . scaffold1816 GLEAN mRNA 209712 209921 0.819371 + . ID=CGI_10014402; scaffold1816 WUBlastX DNA_Kolobok 209712 209921 66 + . . scaffold1816 GLEAN mRNA 209159 209353 0.819371 + . ID=CGI_10014402; scaffold1816 WUBlastX DNA_Kolobok 209159 209353 86 + . . scaffold1816 GLEAN mRNA 230581 230672 1 + . ID=CGI_10014404; scaffold1816 TRF Tandem_Repeat 230581 230672 142 + . . scaffold1816 GLEAN mRNA 230813 230909 1 + . ID=CGI_10014404; scaffold1816 TRF Tandem_Repeat 230813 230909 106 + . . scaffold1816 GLEAN mRNA 266709 267023 0.575115 + . ID=CGI_10014405; scaffold1816 WUBlastX DNA_Kolobok-Hyd 266271 267023 58 + . . scaffold1816 GLEAN mRNA 276455 276580 0.992548 + . ID=CGI_10014406; scaffold1816 TRF Tandem_Repeat 276455 276580 225 + . . scaffold1816 GLEAN mRNA 279117 279171 0.992548 + . ID=CGI_10014406; scaffold1816 TRF Tandem_Repeat 279117 279171 110 + . . scaffold1816 GLEAN mRNA 350818 351025 0.277013 - . ID=CGI_10014411; scaffold1816 TRF Tandem_Repeat 350818 351025 265 + . . scaffold1816 GLEAN mRNA 353082 353108 0.277013 - . ID=CGI_10014411; scaffold1816 TRF Tandem_Repeat 353082 353108 54 + . . scaffold1816 GLEAN mRNA 357055 357156 0.277013 - . ID=CGI_10014411; scaffold1816 TRF Tandem_Repeat 357055 357156 159 + . . scaffold1816 GLEAN mRNA 357055 357156 0.277013 - . ID=CGI_10014411; scaffold1816 TRF Tandem_Repeat 357055 357156 179 + . . scaffold873 GLEAN mRNA 6689 6800 1 - . ID=CGI_10014412; scaffold873 TRF Tandem_Repeat 6689 6800 163 + . . scaffold873 GLEAN mRNA 6689 6800 0.610669 + . ID=CGI_10014413; scaffold873 TRF Tandem_Repeat 6689 6800 163 + . . scaffold873 GLEAN mRNA 28794 28917 1 + . ID=CGI_10014414; scaffold873 TRF Tandem_Repeat 28794 28917 137 + . . scaffold873 GLEAN mRNA 28783 28916 1 + . ID=CGI_10014414; scaffold873 TRF Tandem_Repeat 28783 28916 148 + . . scaffold873 GLEAN mRNA 120948 121034 0.999675 + . ID=CGI_10014417; scaffold873 TRF Tandem_Repeat 120948 121034 79 + . . scaffold873 GLEAN mRNA 121064 121222 0.999675 + . ID=CGI_10014417; scaffold873 TRF Tandem_Repeat 121064 121222 135 + . . scaffold873 GLEAN mRNA 121222 121387 0.999675 + . ID=CGI_10014417; scaffold873 TRF Tandem_Repeat 121222 121387 167 + . . scaffold873 GLEAN mRNA 129849 129884 0.999675 + . ID=CGI_10014417; scaffold873 TRF Tandem_Repeat 129849 129884 72 + . . scaffold873 GLEAN mRNA 136241 136465 0.999768 + . ID=CGI_10014419; scaffold873 TRF Tandem_Repeat 136241 136465 124 + . . scaffold873 GLEAN mRNA 136745 136848 0.999768 + . ID=CGI_10014419; scaffold873 TRF Tandem_Repeat 136745 136848 100 + . . scaffold873 GLEAN mRNA 137152 137280 0.999768 + . ID=CGI_10014419; scaffold873 TRF Tandem_Repeat 137152 137280 100 + . . scaffold873 GLEAN mRNA 144374 144424 0.999768 + . ID=CGI_10014419; scaffold873 TRF Tandem_Repeat 144374 144424 102 + . . scaffold873 GLEAN mRNA 183357 183395 0.999752 + . ID=CGI_10014421; scaffold873 TRF Tandem_Repeat 183357 183395 71 + . . scaffold873 GLEAN mRNA 231620 231802 0.99998 + . ID=CGI_10014424; scaffold873 WUBlastX DNA_Harbinger 231620 231802 56 + . . scaffold873 GLEAN mRNA 277915 277984 0.99935 + . ID=CGI_10014425; scaffold873 TRF Tandem_Repeat 277915 277984 61 + . . scaffold873 GLEAN mRNA 277924 277992 0.99935 + . ID=CGI_10014425; scaffold873 TRF Tandem_Repeat 277924 277992 54 + . . scaffold873 GLEAN mRNA 304742 304788 0.584292 + . ID=CGI_10014429; scaffold873 TRF Tandem_Repeat 304742 304788 94 + . . scaffold873 GLEAN mRNA 311517 311786 0.974222 + . ID=CGI_10014430; scaffold873 TRF Tandem_Repeat 311517 311786 400 + . . scaffold873 GLEAN mRNA 311850 311961 0.974222 + . ID=CGI_10014430; scaffold873 TRF Tandem_Repeat 311850 311961 103 + . . scaffold873 GLEAN mRNA 328551 328705 0.999984 + . ID=CGI_10014432; scaffold873 TRF Tandem_Repeat 328551 328705 154 + . . scaffold873 GLEAN mRNA 370257 370381 0.461608 + . ID=CGI_10014438; scaffold873 WUBlastX LINE_Proto2 370094 370381 77 - . . scaffold873 GLEAN mRNA 382128 382327 0.699503 + . ID=CGI_10014439; scaffold873 TRF Tandem_Repeat 382128 382327 219 + . . scaffold873 GLEAN mRNA 387632 387667 0.65096 - . ID=CGI_10014440; scaffold873 TRF Tandem_Repeat 387632 387667 72 + . . scaffold716 GLEAN mRNA 63823 64248 0.546164 - . ID=CGI_10014441; scaffold716 WUBlastX DNA_Kolobok-IS4 63823 64248 56 - . . scaffold716 GLEAN mRNA 103404 103604 0.996451 - . ID=CGI_10014443; scaffold716 TRF Tandem_Repeat 103404 103604 402 + . . scaffold716 GLEAN mRNA 160753 160784 0.999295 + . ID=CGI_10014445; scaffold716 TRF Tandem_Repeat 160753 160784 64 + . . scaffold716 GLEAN mRNA 167471 167607 0.999295 + . ID=CGI_10014445; scaffold716 TRF Tandem_Repeat 167471 167607 175 + . . scaffold716 GLEAN mRNA 167471 168196 0.999295 + . ID=CGI_10014445; scaffold716 TRF Tandem_Repeat 167471 168196 551 + . . scaffold716 GLEAN mRNA 167644 168196 0.999295 + . ID=CGI_10014445; scaffold716 TRF Tandem_Repeat 167644 168196 460 + . . scaffold716 GLEAN mRNA 174757 175139 0.731898 - . ID=CGI_10014446; scaffold716 TRF Tandem_Repeat 174757 175139 597 + . . scaffold716 GLEAN mRNA 177839 178006 0.731898 - . ID=CGI_10014446; scaffold716 TRF Tandem_Repeat 177839 178006 142 + . . scaffold716 GLEAN mRNA 185596 187276 0.731898 - . ID=CGI_10014446; scaffold716 TRF Tandem_Repeat 185596 187276 2227 + . . scaffold716 GLEAN mRNA 185596 187272 0.731898 - . ID=CGI_10014446; scaffold716 TRF Tandem_Repeat 185596 187272 2506 + . . scaffold716 GLEAN mRNA 185596 187272 0.731898 - . ID=CGI_10014446; scaffold716 TRF Tandem_Repeat 185596 187272 3142 + . . scaffold716 GLEAN mRNA 207820 207877 0.734544 + . ID=CGI_10014447; scaffold716 TRF Tandem_Repeat 207820 207877 82 + . . scaffold716 GLEAN mRNA 212893 212918 0.734544 + . ID=CGI_10014447; scaffold716 TRF Tandem_Repeat 212893 212918 52 + . . scaffold716 GLEAN mRNA 222696 222741 0.993907 - . ID=CGI_10014448; scaffold716 TRF Tandem_Repeat 222696 222741 92 + . . scaffold716 GLEAN mRNA 227628 227678 0.993907 - . ID=CGI_10014448; scaffold716 TRF Tandem_Repeat 227628 227678 102 + . . scaffold716 GLEAN mRNA 331929 332879 0.842692 + . ID=CGI_10014452; scaffold716 WUBlastX LTR_Ngaro 331929 332879 260 + . . scaffold716 GLEAN mRNA 329454 330194 0.842692 + . ID=CGI_10014452; scaffold716 WUBlastX LTR_Ngaro 329454 330194 198 + . . scaffold716 GLEAN mRNA 330445 332019 0.842692 + . ID=CGI_10014452; scaffold716 WUBlastX LTR_Ngaro 330445 332019 1068 + . . scaffold716 GLEAN mRNA 329724 330341 0.842692 + . ID=CGI_10014452; scaffold716 WUBlastX LTR_Ngaro 329724 330341 75 + . . scaffold890 GLEAN mRNA 35334 35488 1 - . ID=CGI_10014458; scaffold890 TRF Tandem_Repeat 35334 35488 82 + . . scaffold890 GLEAN mRNA 47897 48144 0.999351 + . ID=CGI_10014460; scaffold890 TRF Tandem_Repeat 47897 48144 284 + . . scaffold890 GLEAN mRNA 47897 48152 0.999351 + . ID=CGI_10014460; scaffold890 TRF Tandem_Repeat 47897 48152 251 + . . scaffold890 GLEAN mRNA 48651 48925 0.999351 + . ID=CGI_10014460; scaffold890 TRF Tandem_Repeat 48651 48925 222 + . . scaffold890 GLEAN mRNA 48643 48923 0.999351 + . ID=CGI_10014460; scaffold890 TRF Tandem_Repeat 48643 48923 357 + . . scaffold890 GLEAN mRNA 48651 48859 0.999351 + . ID=CGI_10014460; scaffold890 TRF Tandem_Repeat 48651 48859 346 + . . scaffold890 GLEAN mRNA 64145 64176 0.999351 + . ID=CGI_10014460; scaffold890 TRF Tandem_Repeat 64145 64176 64 + . . scaffold890 GLEAN mRNA 64145 64176 0.854327 - . ID=CGI_10014462; scaffold890 TRF Tandem_Repeat 64145 64176 64 + . . scaffold890 GLEAN mRNA 85847 86120 1 - . ID=CGI_10014464; scaffold890 TRF Tandem_Repeat 85847 86120 79 + . . scaffold890 GLEAN mRNA 85853 86128 1 - . ID=CGI_10014464; scaffold890 TRF Tandem_Repeat 85853 86128 188 + . . scaffold890 GLEAN mRNA 85910 86175 1 - . ID=CGI_10014464; scaffold890 TRF Tandem_Repeat 85910 86175 134 + . . scaffold890 GLEAN mRNA 83401 83868 1 - . ID=CGI_10014464; scaffold890 WUBlastX DNA_TcMar-Tc1 83401 83868 70 - . . scaffold890 GLEAN mRNA 83473 84264 1 - . ID=CGI_10014464; scaffold890 WUBlastX DNA_TcMar-Tc1 83473 84264 369 - . . scaffold890 GLEAN mRNA 83473 84408 1 - . ID=CGI_10014464; scaffold890 WUBlastX DNA_TcMar-Tc1 83473 84408 115 - . . scaffold890 GLEAN mRNA 85847 86120 0.741718 + . ID=CGI_10014465; scaffold890 TRF Tandem_Repeat 85847 86120 79 + . . scaffold890 GLEAN mRNA 85853 86128 0.741718 + . ID=CGI_10014465; scaffold890 TRF Tandem_Repeat 85853 86128 188 + . . scaffold890 GLEAN mRNA 85910 86175 0.741718 + . ID=CGI_10014465; scaffold890 TRF Tandem_Repeat 85910 86175 134 + . . scaffold890 GLEAN mRNA 145836 145892 0.983866 - . ID=CGI_10014469; scaffold890 TRF Tandem_Repeat 145836 145892 114 + . . scaffold890 GLEAN mRNA 206787 207078 0.887504 - . ID=CGI_10014471; scaffold890 TRF Tandem_Repeat 206787 207078 166 + . . scaffold890 GLEAN mRNA 206984 207078 0.887504 - . ID=CGI_10014471; scaffold890 TRF Tandem_Repeat 206984 207078 61 + . . scaffold890 GLEAN mRNA 206826 207130 0.887504 - . ID=CGI_10014471; scaffold890 TRF Tandem_Repeat 206826 207130 121 + . . scaffold890 GLEAN mRNA 248675 248725 1 - . ID=CGI_10014475; scaffold890 TRF Tandem_Repeat 248675 248725 57 + . . scaffold890 GLEAN mRNA 280913 281265 0.999017 - . ID=CGI_10014479; scaffold890 TRF Tandem_Repeat 280913 281265 408 + . . scaffold890 GLEAN mRNA 291485 291599 0.999997 - . ID=CGI_10014480; scaffold890 TRF Tandem_Repeat 291485 291599 74 + . . scaffold890 GLEAN mRNA 290577 290780 0.999997 - . ID=CGI_10014480; scaffold890 WUBlastX LINE_L2 290577 290780 52 - . . scaffold890 GLEAN mRNA 290532 290780 0.999997 - . ID=CGI_10014480; scaffold890 WUBlastX LINE_L2 290532 290780 39 - . . scaffold890 GLEAN mRNA 290613 290780 0.999997 - . ID=CGI_10014480; scaffold890 WUBlastX LINE_CR1 290613 290780 70 - . . scaffold890 GLEAN mRNA 290670 290954 0.999997 - . ID=CGI_10014480; scaffold890 WUBlastX LINE_CR1 290670 290954 39 - . . scaffold890 GLEAN mRNA 316968 317712 0.301589 + . ID=CGI_10014481; scaffold890 TRF Tandem_Repeat 316968 317712 1124 + . . scaffold890 GLEAN mRNA 318664 318810 0.301589 + . ID=CGI_10014481; scaffold890 TRF Tandem_Repeat 318664 318810 73 + . . scaffold890 GLEAN mRNA 318726 318855 0.301589 + . ID=CGI_10014481; scaffold890 TRF Tandem_Repeat 318726 318855 93 + . . scaffold890 GLEAN mRNA 378245 378458 0.838487 - . ID=CGI_10014482; scaffold890 TRF Tandem_Repeat 378245 378458 136 + . . scaffold531 GLEAN mRNA 7238 7634 0.992184 + . ID=CGI_10014485; scaffold531 TRF Tandem_Repeat 7238 7634 539 + . . scaffold531 GLEAN mRNA 7238 7634 0.992184 + . ID=CGI_10014485; scaffold531 TRF Tandem_Repeat 7238 7634 600 + . . scaffold531 GLEAN mRNA 26386 26589 0.526203 - . ID=CGI_10014486; scaffold531 WUBlastX DNA_Academ 26386 26589 68 - . . scaffold531 GLEAN mRNA 26356 26691 0.526203 - . ID=CGI_10014486; scaffold531 WUBlastX DNA_Academ 26356 26691 61 - . . scaffold531 GLEAN mRNA 25523 26266 0.526203 - . ID=CGI_10014486; scaffold531 WUBlastX DNA_Academ 25523 26266 332 - . . scaffold531 GLEAN mRNA 25026 25514 0.526203 - . ID=CGI_10014486; scaffold531 WUBlastX DNA_Academ 25026 25514 195 - . . scaffold531 GLEAN mRNA 25514 26137 0.526203 - . ID=CGI_10014486; scaffold531 WUBlastX DNA_Academ 25514 26137 358 - . . scaffold531 GLEAN mRNA 26386 26550 0.526203 - . ID=CGI_10014486; scaffold531 WUBlastX DNA_Academ 26386 26550 125 - . . scaffold531 GLEAN mRNA 22748 22982 0.526203 - . ID=CGI_10014486; scaffold531 WUBlastX DNA_Academ 22590 22982 177 - . . scaffold531 GLEAN mRNA 22982 23659 0.526203 - . ID=CGI_10014486; scaffold531 WUBlastX DNA_Academ 22982 23659 299 - . . scaffold531 GLEAN mRNA 49370 49445 0.651942 + . ID=CGI_10014488; scaffold531 TRF Tandem_Repeat 49370 49445 152 + . . scaffold531 GLEAN mRNA 60711 60736 0.99879 - . ID=CGI_10014489; scaffold531 TRF Tandem_Repeat 60711 60736 52 + . . scaffold531 GLEAN mRNA 82600 82645 0.999624 - . ID=CGI_10014490; scaffold531 TRF Tandem_Repeat 82600 82645 58 + . . scaffold531 GLEAN mRNA 97583 97619 0.999624 - . ID=CGI_10014490; scaffold531 TRF Tandem_Repeat 97583 97619 74 + . . scaffold531 GLEAN mRNA 214886 214967 0.999351 - . ID=CGI_10014497; scaffold531 TRF Tandem_Repeat 214886 214967 128 + . . scaffold531 GLEAN mRNA 243718 243898 0.648847 - . ID=CGI_10014502; scaffold531 TRF Tandem_Repeat 243718 243898 83 + . . scaffold531 GLEAN mRNA 243716 243875 0.648847 - . ID=CGI_10014502; scaffold531 TRF Tandem_Repeat 243716 243875 95 + . . scaffold531 GLEAN mRNA 268807 268887 0.999734 - . ID=CGI_10014503; scaffold531 TRF Tandem_Repeat 268807 268887 162 + . . scaffold531 GLEAN mRNA 271097 271155 0.999734 - . ID=CGI_10014503; scaffold531 TRF Tandem_Repeat 271097 271155 118 + . . scaffold531 GLEAN mRNA 261681 262441 0.999734 - . ID=CGI_10014503; scaffold531 TRF Tandem_Repeat 261681 262441 956 + . . scaffold818 GLEAN mRNA 65353 65814 0.999999 - . ID=CGI_10014508; scaffold818 WUBlastX LTR_Pao 65353 66729 1303 - . . scaffold818 GLEAN mRNA 107102 107129 0.320926 + . ID=CGI_10014509; scaffold818 TRF Tandem_Repeat 107102 107129 56 + . . scaffold818 GLEAN mRNA 114838 115052 0.320926 + . ID=CGI_10014509; scaffold818 TRF Tandem_Repeat 114838 115052 140 + . . scaffold818 GLEAN mRNA 242575 243012 1 - . ID=CGI_10014511; scaffold818 TRF Tandem_Repeat 242575 243012 723 + . . scaffold818 GLEAN mRNA 247095 247305 1 - . ID=CGI_10014511; scaffold818 TRF Tandem_Repeat 247095 247305 334 + . . scaffold818 GLEAN mRNA 248387 249104 1 - . ID=CGI_10014511; scaffold818 TRF Tandem_Repeat 248387 249104 1130 + . . scaffold818 GLEAN mRNA 259979 260204 0.999452 + . ID=CGI_10014514; scaffold818 TRF Tandem_Repeat 259979 260204 452 + . . scaffold818 GLEAN mRNA 278621 278839 0.988898 + . ID=CGI_10014515; scaffold818 WUBlastX LINE_CR1-L2 278621 278839 45 - . . scaffold818 GLEAN mRNA 278876 279004 0.988898 + . ID=CGI_10014515; scaffold818 WUBlastX LINE_CR1-L2 278876 279004 29 - . . scaffold818 GLEAN mRNA 295187 295220 1 + . ID=CGI_10014516; scaffold818 TRF Tandem_Repeat 295187 295220 68 + . . scaffold818 GLEAN mRNA 323223 323463 0.999518 - . ID=CGI_10014518; scaffold818 TRF Tandem_Repeat 323223 323463 135 + . . scaffold818 GLEAN mRNA 324750 324780 0.999518 - . ID=CGI_10014518; scaffold818 TRF Tandem_Repeat 324750 324780 62 + . . scaffold818 GLEAN mRNA 376266 376333 0.999999 + . ID=CGI_10014522; scaffold818 TRF Tandem_Repeat 376266 376333 118 + . . scaffold818 GLEAN mRNA 379906 379953 0.999999 + . ID=CGI_10014522; scaffold818 TRF Tandem_Repeat 379906 379953 80 + . . scaffold818 GLEAN mRNA 379906 379953 0.999524 - . ID=CGI_10014523; scaffold818 TRF Tandem_Repeat 379906 379953 80 + . . scaffold818 GLEAN mRNA 381451 381521 1 - . ID=CGI_10014524; scaffold818 TRF Tandem_Repeat 381451 381521 92 + . . scaffold818 GLEAN mRNA 399021 399076 0.999374 + . ID=CGI_10014525; scaffold818 TRF Tandem_Repeat 399021 399076 62 + . . scaffold457 GLEAN mRNA 41837 41878 0.303508 + . ID=CGI_10014527; scaffold457 TRF Tandem_Repeat 41837 41878 84 + . . scaffold457 GLEAN mRNA 50391 50430 0.303508 + . ID=CGI_10014527; scaffold457 TRF Tandem_Repeat 50391 50430 80 + . . scaffold457 GLEAN mRNA 51790 51833 0.303508 + . ID=CGI_10014527; scaffold457 TRF Tandem_Repeat 51790 51833 79 + . . scaffold457 GLEAN mRNA 81562 81599 0.981255 + . ID=CGI_10014528; scaffold457 TRF Tandem_Repeat 81562 81599 51 + . . scaffold457 GLEAN mRNA 81557 81602 0.981255 + . ID=CGI_10014528; scaffold457 TRF Tandem_Repeat 81557 81602 51 + . . scaffold457 GLEAN mRNA 86951 87006 0.981255 + . ID=CGI_10014528; scaffold457 TRF Tandem_Repeat 86951 87006 112 + . . scaffold457 GLEAN mRNA 115092 115493 0.650664 - . ID=CGI_10014529; scaffold457 TRF Tandem_Repeat 115092 115493 142 + . . scaffold457 GLEAN mRNA 114832 115519 0.650664 - . ID=CGI_10014529; scaffold457 TRF Tandem_Repeat 114832 115519 532 + . . scaffold457 GLEAN mRNA 115087 115527 0.650664 - . ID=CGI_10014529; scaffold457 TRF Tandem_Repeat 115087 115527 86 + . . scaffold457 GLEAN mRNA 116502 116526 0.650664 - . ID=CGI_10014529; scaffold457 TRF Tandem_Repeat 116502 116526 50 + . . scaffold457 GLEAN mRNA 178375 178776 0.78273 - . ID=CGI_10014532; scaffold457 TRF Tandem_Repeat 178375 178776 441 + . . scaffold457 GLEAN mRNA 180415 180452 0.78273 - . ID=CGI_10014532; scaffold457 TRF Tandem_Repeat 180415 180452 67 + . . scaffold457 GLEAN mRNA 180415 180453 0.78273 - . ID=CGI_10014532; scaffold457 TRF Tandem_Repeat 180415 180453 51 + . . scaffold457 GLEAN mRNA 218687 218740 0.400336 - . ID=CGI_10014534; scaffold457 TRF Tandem_Repeat 218687 218740 108 + . . scaffold457 GLEAN mRNA 214750 214986 0.400336 - . ID=CGI_10014534; scaffold457 WUBlastX DNA_TcMar-Marin 214750 214986 65 - . . scaffold457 GLEAN mRNA 216851 217981 0.400336 - . ID=CGI_10014534; scaffold457 WUBlastX LINE_L1-Tx1 216851 217981 194 + . . scaffold457 GLEAN mRNA 216666 216851 0.400336 - . ID=CGI_10014534; scaffold457 WUBlastX LINE_L1-Tx1 216666 216851 52 + . . scaffold457 GLEAN mRNA 214510 214668 0.400336 - . ID=CGI_10014534; scaffold457 WUBlastX DNA_TcMar-Marin 214510 214668 29 - . . scaffold457 GLEAN mRNA 239160 239356 0.980841 - . ID=CGI_10014536; scaffold457 TRF Tandem_Repeat 239160 239356 249 + . . scaffold457 GLEAN mRNA 239159 239355 0.980841 - . ID=CGI_10014536; scaffold457 TRF Tandem_Repeat 239159 239355 245 + . . scaffold457 GLEAN mRNA 269930 269988 0.989915 + . ID=CGI_10014537; scaffold457 TRF Tandem_Repeat 269930 269988 50 + . . scaffold457 GLEAN mRNA 273554 273627 0.989915 + . ID=CGI_10014537; scaffold457 TRF Tandem_Repeat 273554 273627 130 + . . scaffold457 GLEAN mRNA 289842 290403 0.999645 - . ID=CGI_10014539; scaffold457 TRF Tandem_Repeat 289842 290403 979 + . . scaffold457 GLEAN mRNA 297177 297206 0.999645 - . ID=CGI_10014539; scaffold457 TRF Tandem_Repeat 297177 297206 60 + . . scaffold457 GLEAN mRNA 297773 297812 0.999645 - . ID=CGI_10014539; scaffold457 TRF Tandem_Repeat 297773 297812 80 + . . scaffold457 GLEAN mRNA 331080 331472 0.990715 - . ID=CGI_10014541; scaffold457 TRF Tandem_Repeat 331080 331472 678 + . . scaffold457 GLEAN mRNA 336123 336217 0.990715 - . ID=CGI_10014541; scaffold457 TRF Tandem_Repeat 336123 336217 79 + . . scaffold457 GLEAN mRNA 344833 345286 0.990715 - . ID=CGI_10014541; scaffold457 TRF Tandem_Repeat 344833 345286 456 + . . scaffold457 GLEAN mRNA 344833 345306 0.990715 - . ID=CGI_10014541; scaffold457 TRF Tandem_Repeat 344833 345306 456 + . . scaffold457 GLEAN mRNA 345514 345668 0.990715 - . ID=CGI_10014541; scaffold457 TRF Tandem_Repeat 345514 345668 134 + . . scaffold457 GLEAN mRNA 353073 353126 0.990715 - . ID=CGI_10014541; scaffold457 TRF Tandem_Repeat 353073 353126 108 + . . scaffold457 GLEAN mRNA 354494 354868 0.990715 - . ID=CGI_10014541; scaffold457 TRF Tandem_Repeat 354494 354868 678 + . . scaffold457 GLEAN mRNA 357779 357923 0.990715 - . ID=CGI_10014541; scaffold457 TRF Tandem_Repeat 357779 357923 175 + . . scaffold457 GLEAN mRNA 367192 367245 0.499678 - . ID=CGI_10014542; scaffold457 TRF Tandem_Repeat 367192 367245 90 + . . scaffold457 GLEAN mRNA 366505 366903 0.499678 - . ID=CGI_10014542; scaffold457 WUBlastX LINE_RTE-BovB 366505 366903 144 + . . scaffold457 GLEAN mRNA 366893 367021 0.499678 - . ID=CGI_10014542; scaffold457 WUBlastX LINE_RTE-BovB 366893 367021 82 + . . scaffold457 GLEAN mRNA 365430 366185 0.499678 - . ID=CGI_10014542; scaffold457 WUBlastX LINE_RTE-BovB 365430 366185 404 + . . scaffold457 GLEAN mRNA 366622 366912 0.499678 - . ID=CGI_10014542; scaffold457 WUBlastX LINE_RTE-BovB 366622 366912 232 + . . scaffold457 GLEAN mRNA 365264 366107 0.499678 - . ID=CGI_10014542; scaffold457 WUBlastX LINE_RTE 365217 366107 48 + . . scaffold457 GLEAN mRNA 365718 366536 0.499678 - . ID=CGI_10014542; scaffold457 WUBlastX LINE_RTE-BovB 365718 366536 133 + . . scaffold457 GLEAN mRNA 366914 367111 0.499678 - . ID=CGI_10014542; scaffold457 WUBlastX LINE_I 366914 367111 26 + . . scaffold1780 GLEAN mRNA 33504 33558 0.761813 - . ID=CGI_10014544; scaffold1780 TRF Tandem_Repeat 33504 33558 110 + . . scaffold1780 GLEAN mRNA 65992 66025 0.999643 + . ID=CGI_10014546; scaffold1780 TRF Tandem_Repeat 65992 66025 50 + . . scaffold1780 GLEAN mRNA 66328 66367 0.999643 + . ID=CGI_10014546; scaffold1780 TRF Tandem_Repeat 66328 66367 80 + . . scaffold1780 GLEAN mRNA 66369 66408 0.999643 + . ID=CGI_10014546; scaffold1780 TRF Tandem_Repeat 66369 66408 57 + . . scaffold1780 GLEAN mRNA 70227 70335 0.999643 + . ID=CGI_10014546; scaffold1780 TRF Tandem_Repeat 70227 70335 125 + . . scaffold1780 GLEAN mRNA 71036 71094 0.999643 + . ID=CGI_10014546; scaffold1780 TRF Tandem_Repeat 71036 71094 91 + . . scaffold1780 GLEAN mRNA 71040 71101 0.999643 + . ID=CGI_10014546; scaffold1780 TRF Tandem_Repeat 71040 71101 88 + . . scaffold1780 GLEAN mRNA 71287 71489 0.999643 + . ID=CGI_10014546; scaffold1780 TRF Tandem_Repeat 71287 71489 187 + . . scaffold1780 GLEAN mRNA 71259 71514 0.999643 + . ID=CGI_10014546; scaffold1780 TRF Tandem_Repeat 71259 71514 494 + . . scaffold1780 GLEAN mRNA 79344 79373 0.99999 - . ID=CGI_10014547; scaffold1780 TRF Tandem_Repeat 79344 79373 60 + . . scaffold1780 GLEAN mRNA 79724 80097 0.99999 - . ID=CGI_10014547; scaffold1780 TRF Tandem_Repeat 79724 80097 658 + . . scaffold1780 GLEAN mRNA 113538 113567 0.543 - . ID=CGI_10014549; scaffold1780 TRF Tandem_Repeat 113538 113567 60 + . . scaffold1780 GLEAN mRNA 112718 112978 0.543 - . ID=CGI_10014549; scaffold1780 WUBlastX LINE_RTE-BovB 112718 112978 181 + . . scaffold1780 GLEAN mRNA 111588 112832 0.543 - . ID=CGI_10014549; scaffold1780 WUBlastX LINE_RTE-BovB 111588 112832 981 + . . scaffold1780 GLEAN mRNA 110602 110781 0.543 - . ID=CGI_10014549; scaffold1780 WUBlastX LINE_CR1 110602 110781 32 + . . scaffold1780 GLEAN mRNA 111354 112319 0.543 - . ID=CGI_10014549; scaffold1780 WUBlastX LINE_L1 111354 112319 69 + . . scaffold1780 GLEAN mRNA 148858 148889 0.544852 - . ID=CGI_10014550; scaffold1780 TRF Tandem_Repeat 148858 148889 64 + . . scaffold1780 GLEAN mRNA 149712 150370 0.544852 - . ID=CGI_10014550; scaffold1780 TRF Tandem_Repeat 149712 150370 716 + . . scaffold1780 GLEAN mRNA 169763 170017 0.814009 - . ID=CGI_10014552; scaffold1780 TRF Tandem_Repeat 169763 170017 429 + . . scaffold1780 GLEAN mRNA 170975 173938 0.814009 - . ID=CGI_10014552; scaffold1780 TRF Tandem_Repeat 170975 173938 4235 + . . scaffold1780 GLEAN mRNA 180789 180946 0.814009 - . ID=CGI_10014552; scaffold1780 TRF Tandem_Repeat 180789 180946 235 + . . scaffold1780 GLEAN mRNA 192526 192699 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 192526 192699 231 + . . scaffold1780 GLEAN mRNA 193236 193998 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 193236 193998 642 + . . scaffold1780 GLEAN mRNA 193236 193989 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 193236 193989 827 + . . scaffold1780 GLEAN mRNA 194173 194342 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 194173 194342 189 + . . scaffold1780 GLEAN mRNA 195698 195753 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 195698 195753 87 + . . scaffold1780 GLEAN mRNA 200703 200876 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 200703 200876 137 + . . scaffold1780 GLEAN mRNA 202899 203530 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 202899 203530 617 + . . scaffold1780 GLEAN mRNA 202899 203530 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 202899 203530 617 + . . scaffold1780 GLEAN mRNA 207945 208860 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 207945 208860 1309 + . . scaffold1780 GLEAN mRNA 208856 208960 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 208856 208960 174 + . . scaffold1780 GLEAN mRNA 208856 209247 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 208856 209247 511 + . . scaffold1780 GLEAN mRNA 208961 209247 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 208961 209247 421 + . . scaffold1780 GLEAN mRNA 213145 213710 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 213145 213710 718 + . . scaffold1780 GLEAN mRNA 213704 213739 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 213704 213739 72 + . . scaffold1780 GLEAN mRNA 214371 214629 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 214371 214629 310 + . . scaffold1780 GLEAN mRNA 230062 230165 0.9993 + . ID=CGI_10014554; scaffold1780 TRF Tandem_Repeat 230062 230165 156 + . . scaffold1780 GLEAN mRNA 232619 233689 0.9993 + . ID=CGI_10014554; scaffold1780 TRF Tandem_Repeat 232619 233689 2007 + . . scaffold1780 GLEAN mRNA 236040 236192 0.9993 + . ID=CGI_10014554; scaffold1780 TRF Tandem_Repeat 236040 236192 279 + . . scaffold1780 GLEAN mRNA 239530 239717 0.9993 + . ID=CGI_10014554; scaffold1780 TRF Tandem_Repeat 239530 239717 82 + . . scaffold1780 GLEAN mRNA 237075 240441 0.9993 + . ID=CGI_10014554; scaffold1780 TRF Tandem_Repeat 237075 240441 5357 + . . scaffold1780 GLEAN mRNA 256296 257172 0.999675 - . ID=CGI_10014555; scaffold1780 TRF Tandem_Repeat 256296 257172 1262 + . . scaffold1780 GLEAN mRNA 259842 259965 0.999675 - . ID=CGI_10014555; scaffold1780 TRF Tandem_Repeat 259842 259965 59 + . . scaffold1780 GLEAN mRNA 259842 260142 0.999675 - . ID=CGI_10014555; scaffold1780 TRF Tandem_Repeat 259842 260142 404 + . . scaffold1780 GLEAN mRNA 260151 261061 0.999675 - . ID=CGI_10014555; scaffold1780 TRF Tandem_Repeat 260151 261061 1267 + . . scaffold1780 GLEAN mRNA 260151 261061 0.999675 - . ID=CGI_10014555; scaffold1780 TRF Tandem_Repeat 260151 261061 1247 + . . scaffold1780 GLEAN mRNA 260637 261009 0.999675 - . ID=CGI_10014555; scaffold1780 TRF Tandem_Repeat 260637 261009 109 + . . scaffold1780 GLEAN mRNA 261813 262038 0.999675 - . ID=CGI_10014555; scaffold1780 TRF Tandem_Repeat 261813 262038 67 + . . scaffold1780 GLEAN mRNA 261932 262060 0.999675 - . ID=CGI_10014555; scaffold1780 TRF Tandem_Repeat 261932 262060 87 + . . scaffold1780 GLEAN mRNA 262728 262857 0.999675 - . ID=CGI_10014555; scaffold1780 TRF Tandem_Repeat 262728 262857 86 + . . scaffold1780 GLEAN mRNA 261428 262895 0.999675 - . ID=CGI_10014555; scaffold1780 TRF Tandem_Repeat 261428 262895 279 + . . scaffold1780 GLEAN mRNA 261541 262896 0.999675 - . ID=CGI_10014555; scaffold1780 TRF Tandem_Repeat 261541 262896 1957 + . . scaffold1780 GLEAN mRNA 261541 262896 0.999675 - . ID=CGI_10014555; scaffold1780 TRF Tandem_Repeat 261541 262896 1957 + . . scaffold1780 GLEAN mRNA 265557 265950 1 - . ID=CGI_10014556; scaffold1780 TRF Tandem_Repeat 265557 265950 487 + . . scaffold1780 GLEAN mRNA 265782 265911 1 - . ID=CGI_10014556; scaffold1780 TRF Tandem_Repeat 265782 265911 86 + . . scaffold1780 GLEAN mRNA 279211 279312 0.999929 + . ID=CGI_10014557; scaffold1780 TRF Tandem_Repeat 279211 279312 78 + . . scaffold1780 GLEAN mRNA 279201 279304 0.999929 + . ID=CGI_10014557; scaffold1780 TRF Tandem_Repeat 279201 279304 76 + . . scaffold1780 GLEAN mRNA 281320 282142 0.999929 + . ID=CGI_10014557; scaffold1780 TRF Tandem_Repeat 281320 282142 701 + . . scaffold1780 GLEAN mRNA 283434 283612 0.999929 + . ID=CGI_10014557; scaffold1780 TRF Tandem_Repeat 283434 283612 270 + . . scaffold1780 GLEAN mRNA 340131 340189 0.84113 + . ID=CGI_10014563; scaffold1780 TRF Tandem_Repeat 340131 340189 118 + . . scaffold1780 GLEAN mRNA 346023 346053 0.84113 + . ID=CGI_10014563; scaffold1780 TRF Tandem_Repeat 346023 346053 62 + . . scaffold1780 GLEAN mRNA 348675 348855 0.84113 + . ID=CGI_10014563; scaffold1780 TRF Tandem_Repeat 348675 348855 147 + . . scaffold1780 GLEAN mRNA 348712 348836 0.84113 + . ID=CGI_10014563; scaffold1780 TRF Tandem_Repeat 348712 348836 134 + . . scaffold1780 GLEAN mRNA 350792 350831 0.84113 + . ID=CGI_10014563; scaffold1780 TRF Tandem_Repeat 350792 350831 80 + . . scaffold1780 GLEAN mRNA 351643 351667 0.84113 + . ID=CGI_10014563; scaffold1780 TRF Tandem_Repeat 351643 351667 50 + . . scaffold43954 GLEAN mRNA 16860 16909 0.997634 - . ID=CGI_10014569; scaffold43954 TRF Tandem_Repeat 16860 16909 73 + . . scaffold43954 GLEAN mRNA 16860 16923 0.997634 - . ID=CGI_10014569; scaffold43954 TRF Tandem_Repeat 16860 16923 67 + . . scaffold43954 GLEAN mRNA 24159 24253 0.997634 - . ID=CGI_10014569; scaffold43954 TRF Tandem_Repeat 24159 24253 95 + . . scaffold43954 GLEAN mRNA 58915 59296 0.777693 - . ID=CGI_10014571; scaffold43954 TRF Tandem_Repeat 58915 59296 683 + . . scaffold43954 GLEAN mRNA 63050 63217 0.777693 - . ID=CGI_10014571; scaffold43954 TRF Tandem_Repeat 63050 63217 212 + . . scaffold43954 GLEAN mRNA 70884 71013 0.777693 - . ID=CGI_10014571; scaffold43954 TRF Tandem_Repeat 70884 71013 84 + . . scaffold43954 GLEAN mRNA 70929 71075 0.777693 - . ID=CGI_10014571; scaffold43954 TRF Tandem_Repeat 70929 71075 64 + . . scaffold43954 GLEAN mRNA 72027 72896 0.777693 - . ID=CGI_10014571; scaffold43954 TRF Tandem_Repeat 72027 72896 1232 + . . scaffold43954 GLEAN mRNA 73034 73071 0.777693 - . ID=CGI_10014571; scaffold43954 TRF Tandem_Repeat 73034 73071 60 + . . scaffold43954 GLEAN mRNA 101642 101810 1 - . ID=CGI_10014574; scaffold43954 TRF Tandem_Repeat 101642 101810 311 + . . scaffold43954 GLEAN mRNA 146684 146941 0.999998 - . ID=CGI_10014576; scaffold43954 WUBlastX LINE_CR1 146684 146941 36 + . . scaffold43954 GLEAN mRNA 146536 146661 0.999998 - . ID=CGI_10014576; scaffold43954 WUBlastX LINE_CR1 146536 146661 39 + . . scaffold43954 GLEAN mRNA 146684 146836 0.999998 - . ID=CGI_10014576; scaffold43954 WUBlastX LINE_CR1 146684 146836 40 + . . scaffold43954 GLEAN mRNA 146642 146842 0.999998 - . ID=CGI_10014576; scaffold43954 WUBlastX LINE_CR1 146642 146842 40 + . . scaffold43954 GLEAN mRNA 149535 149647 0.999998 - . ID=CGI_10014576; scaffold43954 TRF Tandem_Repeat 149535 149647 72 + . . scaffold43954 GLEAN mRNA 149552 149654 0.999998 - . ID=CGI_10014576; scaffold43954 TRF Tandem_Repeat 149552 149654 99 + . . scaffold43954 GLEAN mRNA 192801 192840 0.997744 + . ID=CGI_10014580; scaffold43954 TRF Tandem_Repeat 192801 192840 80 + . . scaffold43954 GLEAN mRNA 190259 190888 0.997744 + . ID=CGI_10014580; scaffold43954 WUBlastX DNA_TcMar-Tc1 190259 190888 47 - . . scaffold43954 GLEAN mRNA 190268 190501 0.997744 + . ID=CGI_10014580; scaffold43954 WUBlastX DNA_TcMar-Tc1 190268 190501 75 - . . scaffold43954 GLEAN mRNA 277771 277820 1 + . ID=CGI_10014581; scaffold43954 TRF Tandem_Repeat 277771 277820 66 + . . scaffold43954 GLEAN mRNA 334847 335032 0.999507 + . ID=CGI_10014586; scaffold43954 WUBlastX DNA_MuDR 334763 335032 82 + . . scaffold43954 GLEAN mRNA 334847 335029 0.999507 + . ID=CGI_10014586; scaffold43954 WUBlastX DNA_MuDR 334616 335029 41 + . . scaffold43954 GLEAN mRNA 335328 335387 0.999507 + . ID=CGI_10014586; scaffold43954 WUBlastX DNA_MuDR 335328 335387 22 + . . scaffold43954 GLEAN mRNA 334847 335170 0.999507 + . ID=CGI_10014586; scaffold43954 WUBlastX DNA_MuDR 334817 335170 49 + . . scaffold43954 GLEAN mRNA 337609 337639 0.997868 + . ID=CGI_10014587; scaffold43954 TRF Tandem_Repeat 337609 337639 62 + . . scaffold43954 GLEAN mRNA 366063 366095 1 - . ID=CGI_10014588; scaffold43954 TRF Tandem_Repeat 366063 366095 57 + . . scaffold43954 GLEAN mRNA 366040 366093 1 - . ID=CGI_10014588; scaffold43954 TRF Tandem_Repeat 366040 366093 54 + . . scaffold43954 GLEAN mRNA 368969 368997 1 - . ID=CGI_10014588; scaffold43954 TRF Tandem_Repeat 368969 368997 58 + . . scaffold1210 GLEAN mRNA 68471 68511 0.728871 - . ID=CGI_10014597; scaffold1210 TRF Tandem_Repeat 68471 68511 82 + . . scaffold1210 GLEAN mRNA 70223 70850 0.728871 - . ID=CGI_10014597; scaffold1210 TRF Tandem_Repeat 70223 70850 686 + . . scaffold1210 GLEAN mRNA 100166 101252 0.550359 - . ID=CGI_10014599; scaffold1210 TRF Tandem_Repeat 100166 101252 1574 + . . scaffold1210 GLEAN mRNA 101457 101494 0.550359 - . ID=CGI_10014599; scaffold1210 TRF Tandem_Repeat 101457 101494 58 + . . scaffold1210 GLEAN mRNA 113033 113087 0.550359 - . ID=CGI_10014599; scaffold1210 TRF Tandem_Repeat 113033 113087 110 + . . scaffold1210 GLEAN mRNA 112508 112852 0.550359 - . ID=CGI_10014599; scaffold1210 WUBlastX LINE_RTE-X 112508 112852 73 + . . scaffold1210 GLEAN mRNA 112577 112903 0.550359 - . ID=CGI_10014599; scaffold1210 WUBlastX LINE_RTE-X 112577 112903 76 + . . scaffold1210 GLEAN mRNA 115123 115271 0.550359 - . ID=CGI_10014599; scaffold1210 TRF Tandem_Repeat 115123 115271 87 + . . scaffold1210 GLEAN mRNA 134955 135003 0.544849 - . ID=CGI_10014600; scaffold1210 TRF Tandem_Repeat 134955 135003 98 + . . scaffold1210 GLEAN mRNA 183070 183185 1 + . ID=CGI_10014603; scaffold1210 TRF Tandem_Repeat 183070 183185 160 + . . scaffold1210 GLEAN mRNA 219866 220099 0.999999 - . ID=CGI_10014605; scaffold1210 WUBlastX LINE_RTE-X 219866 220099 48 - . . scaffold1210 GLEAN mRNA 219902 220240 0.999999 - . ID=CGI_10014605; scaffold1210 WUBlastX LINE_RTE-X 219902 222376 438 - . . scaffold1210 GLEAN mRNA 219854 220126 0.999999 - . ID=CGI_10014605; scaffold1210 WUBlastX LINE_RTE-X 219806 220126 33 - . . scaffold1210 GLEAN mRNA 225913 225966 0.996444 + . ID=CGI_10014606; scaffold1210 TRF Tandem_Repeat 225913 225966 99 + . . scaffold1210 GLEAN mRNA 223162 223240 0.996444 + . ID=CGI_10014606; scaffold1210 WUBlastX LINE_CR1 223121 223240 27 - . . scaffold1210 GLEAN mRNA 242968 242981 0.866433 - . ID=CGI_10014607; scaffold1210 WUBlastX DNA_Academ 242421 242981 329 - . . scaffold1210 GLEAN mRNA 242968 243083 0.866433 - . ID=CGI_10014607; scaffold1210 WUBlastX DNA_Academ 242430 243083 85 - . . scaffold1210 GLEAN mRNA 243034 243171 0.866433 - . ID=CGI_10014607; scaffold1210 WUBlastX DNA_Academ 243034 243171 40 - . . scaffold1210 GLEAN mRNA 243193 243372 0.866433 - . ID=CGI_10014607; scaffold1210 WUBlastX DNA_Academ 243193 243753 207 - . . scaffold1210 GLEAN mRNA 293877 294188 0.325296 + . ID=CGI_10014610; scaffold1210 WUBlastX DNA_hAT-Ac 293877 294188 93 + . . scaffold1210 GLEAN mRNA 293871 294242 0.325296 + . ID=CGI_10014610; scaffold1210 WUBlastX DNA_hAT-Ac 293871 294242 72 + . . scaffold1210 GLEAN mRNA 299844 299908 0.325296 + . ID=CGI_10014610; scaffold1210 TRF Tandem_Repeat 299844 299908 121 + . . scaffold1210 GLEAN mRNA 334981 335047 0.999939 + . ID=CGI_10014612; scaffold1210 TRF Tandem_Repeat 334981 335047 125 + . . scaffold1210 GLEAN mRNA 346666 346709 0.882739 + . ID=CGI_10014613; scaffold1210 TRF Tandem_Repeat 346666 346709 88 + . . scaffold1210 GLEAN mRNA 346675 346735 0.882739 + . ID=CGI_10014613; scaffold1210 TRF Tandem_Repeat 346675 346735 59 + . . scaffold1210 GLEAN mRNA 348039 348115 0.882739 + . ID=CGI_10014613; scaffold1210 TRF Tandem_Repeat 348039 348115 106 + . . scaffold1210 GLEAN mRNA 372753 372797 0.277057 + . ID=CGI_10014615; scaffold1210 TRF Tandem_Repeat 372753 372797 81 + . . scaffold1210 GLEAN mRNA 379406 380076 0.277057 + . ID=CGI_10014615; scaffold1210 TRF Tandem_Repeat 379406 380076 983 + . . scaffold1210 GLEAN mRNA 385838 385913 0.277057 + . ID=CGI_10014615; scaffold1210 TRF Tandem_Repeat 385838 385913 116 + . . scaffold43956 GLEAN mRNA 31202 31285 0.999969 - . ID=CGI_10014619; scaffold43956 TRF Tandem_Repeat 31202 31285 150 + . . scaffold43956 GLEAN mRNA 175677 176514 0.663382 - . ID=CGI_10014623; scaffold43956 TRF Tandem_Repeat 175677 176514 1182 + . . scaffold43956 GLEAN mRNA 176525 176575 0.663382 - . ID=CGI_10014623; scaffold43956 TRF Tandem_Repeat 176525 176575 84 + . . scaffold43956 GLEAN mRNA 180725 180891 0.663597 - . ID=CGI_10014624; scaffold43956 TRF Tandem_Repeat 180725 180891 199 + . . scaffold43956 GLEAN mRNA 185795 186277 0.663597 - . ID=CGI_10014624; scaffold43956 TRF Tandem_Repeat 185795 186277 518 + . . scaffold43956 GLEAN mRNA 187551 189492 0.663597 - . ID=CGI_10014624; scaffold43956 TRF Tandem_Repeat 187551 189492 2154 + . . scaffold43956 GLEAN mRNA 190240 190588 0.663597 - . ID=CGI_10014624; scaffold43956 TRF Tandem_Repeat 190240 190588 270 + . . scaffold43956 GLEAN mRNA 199491 199542 0.999988 + . ID=CGI_10014625; scaffold43956 TRF Tandem_Repeat 199491 199542 97 + . . scaffold43956 GLEAN mRNA 209964 210160 0.558196 - . ID=CGI_10014626; scaffold43956 TRF Tandem_Repeat 209964 210160 187 + . . scaffold43956 GLEAN mRNA 227342 227372 0.558196 - . ID=CGI_10014626; scaffold43956 TRF Tandem_Repeat 227342 227372 55 + . . scaffold43956 GLEAN mRNA 244379 244403 0.558196 - . ID=CGI_10014626; scaffold43956 TRF Tandem_Repeat 244379 244403 50 + . . scaffold43956 GLEAN mRNA 278598 278668 0.999995 + . ID=CGI_10014630; scaffold43956 TRF Tandem_Repeat 278598 278668 142 + . . scaffold43956 GLEAN mRNA 279027 279801 0.999995 + . ID=CGI_10014630; scaffold43956 TRF Tandem_Repeat 279027 279801 183 + . . scaffold43956 GLEAN mRNA 279234 279817 0.999995 + . ID=CGI_10014630; scaffold43956 TRF Tandem_Repeat 279234 279817 740 + . . scaffold43956 GLEAN mRNA 279157 279829 0.999995 + . ID=CGI_10014630; scaffold43956 TRF Tandem_Repeat 279157 279829 713 + . . scaffold43956 GLEAN mRNA 281947 282117 0.999995 + . ID=CGI_10014630; scaffold43956 TRF Tandem_Repeat 281947 282117 261 + . . scaffold43956 GLEAN mRNA 293341 293380 0.721821 - . ID=CGI_10014631; scaffold43956 TRF Tandem_Repeat 293341 293380 80 + . . scaffold43956 GLEAN mRNA 295725 296312 0.721821 - . ID=CGI_10014631; scaffold43956 TRF Tandem_Repeat 295725 296312 164 + . . scaffold43956 GLEAN mRNA 306012 306043 0.999054 + . ID=CGI_10014632; scaffold43956 TRF Tandem_Repeat 306012 306043 57 + . . scaffold43956 GLEAN mRNA 306212 306258 0.999054 + . ID=CGI_10014632; scaffold43956 TRF Tandem_Repeat 306212 306258 58 + . . scaffold43956 GLEAN mRNA 311422 311615 0.999054 + . ID=CGI_10014632; scaffold43956 TRF Tandem_Repeat 311422 311615 298 + . . scaffold43956 GLEAN mRNA 322218 322592 0.999054 + . ID=CGI_10014632; scaffold43956 TRF Tandem_Repeat 322218 322592 651 + . . scaffold43956 GLEAN mRNA 326095 326297 0.999054 + . ID=CGI_10014632; scaffold43956 TRF Tandem_Repeat 326095 326297 399 + . . scaffold43956 GLEAN mRNA 311215 311400 0.999054 + . ID=CGI_10014632; scaffold43956 TRF Tandem_Repeat 311215 311400 331 + . . scaffold43956 GLEAN mRNA 345167 346815 0.950225 - . ID=CGI_10014634; scaffold43956 TRF Tandem_Repeat 345167 346815 2423 + . . scaffold43956 GLEAN mRNA 355985 356030 0.950225 - . ID=CGI_10014634; scaffold43956 TRF Tandem_Repeat 355985 356030 92 + . . scaffold43956 GLEAN mRNA 356534 356873 0.950225 - . ID=CGI_10014634; scaffold43956 TRF Tandem_Repeat 356534 356873 626 + . . scaffold43956 GLEAN mRNA 359922 360148 0.950225 - . ID=CGI_10014634; scaffold43956 TRF Tandem_Repeat 359922 360148 93 + . . scaffold43956 GLEAN mRNA 360528 360626 0.950225 - . ID=CGI_10014634; scaffold43956 TRF Tandem_Repeat 360528 360626 180 + . . scaffold43964 GLEAN mRNA 20782 20828 0.987606 + . ID=CGI_10014635; scaffold43964 TRF Tandem_Repeat 20782 20828 94 + . . scaffold43964 GLEAN mRNA 84196 84227 0.587852 + . ID=CGI_10014639; scaffold43964 TRF Tandem_Repeat 84196 84227 55 + . . scaffold43964 GLEAN mRNA 130672 130923 1 + . ID=CGI_10014642; scaffold43964 WUBlastX DNA_hAT 130672 130923 115 + . . scaffold43964 GLEAN mRNA 129296 129478 1 + . ID=CGI_10014642; scaffold43964 WUBlastX DNA_hAT 128276 129478 537 + . . scaffold43964 GLEAN mRNA 130672 130881 1 + . ID=CGI_10014642; scaffold43964 WUBlastX DNA_hAT 130672 130881 143 + . . scaffold43964 GLEAN mRNA 131300 131416 1 + . ID=CGI_10014642; scaffold43964 WUBlastX DNA_hAT 131300 131416 62 + . . scaffold43964 GLEAN mRNA 130986 131165 1 + . ID=CGI_10014642; scaffold43964 WUBlastX DNA_hAT 130986 131165 90 + . . scaffold43964 GLEAN mRNA 130950 131165 1 + . ID=CGI_10014642; scaffold43964 WUBlastX DNA_hAT 130950 131165 89 + . . scaffold43964 GLEAN mRNA 137051 137290 0.996559 - . ID=CGI_10014643; scaffold43964 TRF Tandem_Repeat 137051 137290 107 + . . scaffold43964 GLEAN mRNA 137094 137459 0.996559 - . ID=CGI_10014643; scaffold43964 TRF Tandem_Repeat 137094 137459 474 + . . scaffold43964 GLEAN mRNA 142436 142466 0.996559 - . ID=CGI_10014643; scaffold43964 TRF Tandem_Repeat 142436 142466 62 + . . scaffold43964 GLEAN mRNA 134806 135075 0.996559 - . ID=CGI_10014643; scaffold43964 WUBlastX LINE_RTE-X 134806 135075 37 - . . scaffold43964 GLEAN mRNA 134734 134958 0.996559 - . ID=CGI_10014643; scaffold43964 WUBlastX LINE_RTE-X 134734 134958 63 - . . scaffold43964 GLEAN mRNA 134806 134952 0.996559 - . ID=CGI_10014643; scaffold43964 WUBlastX LINE_RTE-X 134806 134952 74 - . . scaffold43964 GLEAN mRNA 157636 157716 0.910279 - . ID=CGI_10014644; scaffold43964 TRF Tandem_Repeat 157636 157716 153 + . . scaffold43964 GLEAN mRNA 169949 169983 0.910279 - . ID=CGI_10014644; scaffold43964 TRF Tandem_Repeat 169949 169983 70 + . . scaffold43964 GLEAN mRNA 188872 188923 0.999996 + . ID=CGI_10014645; scaffold43964 TRF Tandem_Repeat 188872 188923 104 + . . scaffold43964 GLEAN mRNA 198954 199008 1 - . ID=CGI_10014647; scaffold43964 TRF Tandem_Repeat 198954 199008 110 + . . scaffold43964 GLEAN mRNA 208377 208427 1 + . ID=CGI_10014648; scaffold43964 TRF Tandem_Repeat 208377 208427 84 + . . scaffold43964 GLEAN mRNA 208438 209224 1 + . ID=CGI_10014648; scaffold43964 TRF Tandem_Repeat 208438 209224 1082 + . . scaffold43964 GLEAN mRNA 225105 225244 0.975204 + . ID=CGI_10014650; scaffold43964 TRF Tandem_Repeat 225105 225244 109 + . . scaffold43964 GLEAN mRNA 229521 229621 0.975204 + . ID=CGI_10014650; scaffold43964 TRF Tandem_Repeat 229521 229621 168 + . . scaffold43964 GLEAN mRNA 255559 255727 0.999961 + . ID=CGI_10014652; scaffold43964 TRF Tandem_Repeat 255559 255727 191 + . . scaffold43964 GLEAN mRNA 279777 280271 0.52614 + . ID=CGI_10014654; scaffold43964 TRF Tandem_Repeat 279777 280271 812 + . . scaffold43964 GLEAN mRNA 280441 280776 0.52614 + . ID=CGI_10014654; scaffold43964 TRF Tandem_Repeat 280441 280776 609 + . . scaffold43964 GLEAN mRNA 282947 283701 0.52614 + . ID=CGI_10014654; scaffold43964 TRF Tandem_Repeat 282947 283701 932 + . . scaffold43964 GLEAN mRNA 292228 292494 1 - . ID=CGI_10014655; scaffold43964 WUBlastX LINE_L2 292228 292494 85 + . . scaffold43964 GLEAN mRNA 292484 292924 1 - . ID=CGI_10014655; scaffold43964 WUBlastX LINE_L2 292484 292924 120 + . . scaffold43964 GLEAN mRNA 316720 316748 1 - . ID=CGI_10014656; scaffold43964 TRF Tandem_Repeat 316720 316748 58 + . . scaffold43964 GLEAN mRNA 329168 329503 0.634978 + . ID=CGI_10014658; scaffold43964 WUBlastX LINE_Penelope 329168 329503 71 + . . scaffold43964 GLEAN mRNA 329422 330063 0.634978 + . ID=CGI_10014658; scaffold43964 WUBlastX LINE_Penelope 329422 330063 162 + . . scaffold43964 GLEAN mRNA 339249 339584 1 + . ID=CGI_10014661; scaffold43964 WUBlastX LINE_Penelope 339249 339584 75 + . . scaffold43964 GLEAN mRNA 339503 340153 1 + . ID=CGI_10014661; scaffold43964 WUBlastX LINE_Penelope 339503 340153 209 + . . scaffold43964 GLEAN mRNA 362285 362312 0.925869 - . ID=CGI_10014662; scaffold43964 TRF Tandem_Repeat 362285 362312 56 + . . scaffold43964 GLEAN mRNA 391271 391312 0.884498 - . ID=CGI_10014664; scaffold43964 TRF Tandem_Repeat 391271 391312 54 + . . scaffold43964 GLEAN mRNA 394298 394347 0.884498 - . ID=CGI_10014664; scaffold43964 TRF Tandem_Repeat 394298 394347 100 + . . scaffold43964 GLEAN mRNA 399445 399514 0.884498 - . ID=CGI_10014664; scaffold43964 TRF Tandem_Repeat 399445 399514 112 + . . scaffold1041 GLEAN mRNA 91722 91758 0.544804 + . ID=CGI_10014668; scaffold1041 TRF Tandem_Repeat 91722 91758 56 + . . scaffold1041 GLEAN mRNA 230703 230938 0.995068 - . ID=CGI_10014677; scaffold1041 TRF Tandem_Repeat 230703 230938 185 + . . scaffold1041 GLEAN mRNA 234058 234118 0.995068 - . ID=CGI_10014677; scaffold1041 TRF Tandem_Repeat 234058 234118 77 + . . scaffold1041 GLEAN mRNA 235174 235220 0.995068 - . ID=CGI_10014677; scaffold1041 TRF Tandem_Repeat 235174 235220 94 + . . scaffold1041 GLEAN mRNA 249769 249811 0.995068 - . ID=CGI_10014677; scaffold1041 TRF Tandem_Repeat 249769 249811 86 + . . scaffold1041 GLEAN mRNA 255459 255485 0.995068 - . ID=CGI_10014677; scaffold1041 TRF Tandem_Repeat 255459 255485 54 + . . scaffold1041 GLEAN mRNA 263361 263403 0.995068 - . ID=CGI_10014677; scaffold1041 TRF Tandem_Repeat 263361 263403 86 + . . scaffold1041 GLEAN mRNA 267392 267446 0.995068 - . ID=CGI_10014677; scaffold1041 TRF Tandem_Repeat 267392 267446 83 + . . scaffold1041 GLEAN mRNA 274968 274995 0.918355 + . ID=CGI_10014678; scaffold1041 TRF Tandem_Repeat 274968 274995 56 + . . scaffold1041 GLEAN mRNA 274968 274995 0.544852 - . ID=CGI_10014679; scaffold1041 TRF Tandem_Repeat 274968 274995 56 + . . scaffold1041 GLEAN mRNA 294654 294809 0.614409 - . ID=CGI_10014681; scaffold1041 WUBlastX LINE_L1 294654 294809 21 - . . scaffold1041 GLEAN mRNA 304405 304453 1 + . ID=CGI_10014682; scaffold1041 TRF Tandem_Repeat 304405 304453 89 + . . scaffold1041 GLEAN mRNA 307498 307535 1 + . ID=CGI_10014682; scaffold1041 TRF Tandem_Repeat 307498 307535 69 + . . scaffold1041 GLEAN mRNA 326620 326653 1 - . ID=CGI_10014686; scaffold1041 TRF Tandem_Repeat 326620 326653 68 + . . scaffold1041 GLEAN mRNA 329411 329495 1 - . ID=CGI_10014686; scaffold1041 TRF Tandem_Repeat 329411 329495 118 + . . scaffold1041 GLEAN mRNA 334032 334172 1 - . ID=CGI_10014686; scaffold1041 TRF Tandem_Repeat 334032 334172 94 + . . scaffold1041 GLEAN mRNA 334082 334233 1 - . ID=CGI_10014686; scaffold1041 TRF Tandem_Repeat 334082 334233 91 + . . scaffold1041 GLEAN mRNA 334009 334240 1 - . ID=CGI_10014686; scaffold1041 TRF Tandem_Repeat 334009 334240 87 + . . scaffold659 GLEAN mRNA 6563 6595 0.692942 + . ID=CGI_10014692; scaffold659 TRF Tandem_Repeat 6563 6595 57 + . . scaffold659 GLEAN mRNA 8275 8313 0.692942 + . ID=CGI_10014692; scaffold659 TRF Tandem_Repeat 8275 8313 78 + . . scaffold659 GLEAN mRNA 9705 9747 0.692942 + . ID=CGI_10014692; scaffold659 TRF Tandem_Repeat 9705 9747 50 + . . scaffold659 GLEAN mRNA 9704 9738 0.692942 + . ID=CGI_10014692; scaffold659 TRF Tandem_Repeat 9704 9738 56 + . . scaffold659 GLEAN mRNA 11285 11635 0.692942 + . ID=CGI_10014692; scaffold659 WUBlastX DNA_P 11285 11635 65 + . . scaffold659 GLEAN mRNA 14258 14575 0.692942 + . ID=CGI_10014692; scaffold659 WUBlastX DNA_IS4EU 14258 14575 77 - . . scaffold659 GLEAN mRNA 11805 12482 0.692942 + . ID=CGI_10014692; scaffold659 WUBlastX DNA_IS4EU 11805 12482 296 + . . scaffold659 GLEAN mRNA 12473 12715 0.692942 + . ID=CGI_10014692; scaffold659 WUBlastX DNA_IS4EU 12473 12715 148 + . . scaffold659 GLEAN mRNA 11285 11830 0.692942 + . ID=CGI_10014692; scaffold659 WUBlastX DNA_P 11285 11830 29 + . . scaffold659 GLEAN mRNA 92785 93126 0.866674 - . ID=CGI_10014694; scaffold659 WUBlastX DNA_MuDR 92785 93144 61 - . . scaffold659 GLEAN mRNA 140565 140615 0.999508 - . ID=CGI_10014700; scaffold659 TRF Tandem_Repeat 140565 140615 102 + . . scaffold659 GLEAN mRNA 157184 158695 0.873524 - . ID=CGI_10014702; scaffold659 TRF Tandem_Repeat 157184 158695 2098 + . . scaffold659 GLEAN mRNA 158865 158930 0.873524 - . ID=CGI_10014702; scaffold659 TRF Tandem_Repeat 158865 158930 71 + . . scaffold659 GLEAN mRNA 160993 162027 0.873524 - . ID=CGI_10014702; scaffold659 TRF Tandem_Repeat 160993 162027 1145 + . . scaffold659 GLEAN mRNA 160993 162027 0.873524 - . ID=CGI_10014702; scaffold659 TRF Tandem_Repeat 160993 162027 1196 + . . scaffold659 GLEAN mRNA 212791 212859 0.840107 + . ID=CGI_10014705; scaffold659 TRF Tandem_Repeat 212791 212859 138 + . . scaffold659 GLEAN mRNA 218918 218961 0.840107 + . ID=CGI_10014705; scaffold659 TRF Tandem_Repeat 218918 218961 88 + . . scaffold659 GLEAN mRNA 279760 279804 0.997519 - . ID=CGI_10014708; scaffold659 TRF Tandem_Repeat 279760 279804 90 + . . scaffold659 GLEAN mRNA 369360 369648 1 + . ID=CGI_10014715; scaffold659 TRF Tandem_Repeat 369360 369648 485 + . . scaffold659 GLEAN mRNA 375443 375481 1 + . ID=CGI_10014715; scaffold659 TRF Tandem_Repeat 375443 375481 78 + . . scaffold681 GLEAN mRNA 32264 32737 0.999855 + . ID=CGI_10014717; scaffold681 WUBlastX LTR_DIRS 32264 32737 143 - . . scaffold681 GLEAN mRNA 32781 32969 0.999855 + . ID=CGI_10014717; scaffold681 TRF Tandem_Repeat 32781 32969 164 + . . scaffold681 GLEAN mRNA 38276 38303 0.999855 + . ID=CGI_10014717; scaffold681 TRF Tandem_Repeat 38276 38303 56 + . . scaffold681 GLEAN mRNA 35255 35530 0.999855 + . ID=CGI_10014717; scaffold681 WUBlastX LINE_CR1 35255 35530 57 + . . scaffold681 GLEAN mRNA 35132 35443 0.999855 + . ID=CGI_10014717; scaffold681 WUBlastX LINE_L2 35132 35443 75 + . . scaffold681 GLEAN mRNA 35177 35428 0.999855 + . ID=CGI_10014717; scaffold681 WUBlastX LINE_L2 35177 35428 86 + . . scaffold681 GLEAN mRNA 34994 35437 0.999855 + . ID=CGI_10014717; scaffold681 WUBlastX LINE_CR1-L2 34994 35437 45 + . . scaffold681 GLEAN mRNA 35261 35650 0.999855 + . ID=CGI_10014717; scaffold681 WUBlastX LINE_L2 35261 35650 43 + . . scaffold681 GLEAN mRNA 44259 44786 0.356255 - . ID=CGI_10014718; scaffold681 WUBlastX LINE_RTE-X 44259 44786 132 - . . scaffold681 GLEAN mRNA 44259 44786 0.777767 + . ID=CGI_10014719; scaffold681 WUBlastX LINE_RTE-X 44259 44786 132 - . . scaffold681 GLEAN mRNA 54240 54604 0.96497 + . ID=CGI_10014720; scaffold681 WUBlastX DNA_TcMar-Fot1 54240 54806 29 - . . scaffold681 GLEAN mRNA 54570 54604 0.96497 + . ID=CGI_10014720; scaffold681 WUBlastX DNA_TcMar-Fot1 54570 54866 79 - . . scaffold681 GLEAN mRNA 54570 54604 0.96497 + . ID=CGI_10014720; scaffold681 WUBlastX DNA_TcMar-Fot1 54570 54806 90 - . . scaffold681 GLEAN mRNA 58081 58134 0.999967 + . ID=CGI_10014721; scaffold681 TRF Tandem_Repeat 58081 58134 65 + . . scaffold681 GLEAN mRNA 58081 58127 0.999967 + . ID=CGI_10014721; scaffold681 TRF Tandem_Repeat 58081 58127 64 + . . scaffold681 GLEAN mRNA 59538 59596 0.999967 + . ID=CGI_10014721; scaffold681 TRF Tandem_Repeat 59538 59596 111 + . . scaffold681 GLEAN mRNA 57434 57772 0.999967 + . ID=CGI_10014721; scaffold681 WUBlastX LINE_RTE-X 57434 57772 98 - . . scaffold681 GLEAN mRNA 64848 65045 0.482696 + . ID=CGI_10014722; scaffold681 WUBlastX DNA_TcMar-Fot1 64848 65045 64 - . . scaffold681 GLEAN mRNA 64890 65081 0.482696 + . ID=CGI_10014722; scaffold681 WUBlastX DNA_TcMar-Fot1 64890 65081 73 - . . scaffold681 GLEAN mRNA 115546 115605 0.999675 + . ID=CGI_10014727; scaffold681 TRF Tandem_Repeat 115546 115605 120 + . . scaffold681 GLEAN mRNA 167880 167913 0.813889 + . ID=CGI_10014729; scaffold681 TRF Tandem_Repeat 167880 167913 68 + . . scaffold681 GLEAN mRNA 261347 261856 0.999068 + . ID=CGI_10014731; scaffold681 WUBlastX LTR_Pao 261347 261856 26 + . . scaffold416 GLEAN mRNA 15323 15368 0.716094 - . ID=CGI_10014735; scaffold416 TRF Tandem_Repeat 15323 15368 65 + . . scaffold416 GLEAN mRNA 16545 16664 0.716094 - . ID=CGI_10014735; scaffold416 WUBlastX LINE_Penelope 16545 16664 88 - . . scaffold416 GLEAN mRNA 46574 46652 0.958703 - . ID=CGI_10014736; scaffold416 TRF Tandem_Repeat 46574 46652 63 + . . scaffold416 GLEAN mRNA 134377 134497 0.660736 + . ID=CGI_10014739; scaffold416 TRF Tandem_Repeat 134377 134497 188 + . . scaffold416 GLEAN mRNA 134950 134988 0.660736 + . ID=CGI_10014739; scaffold416 TRF Tandem_Repeat 134950 134988 78 + . . scaffold416 GLEAN mRNA 137325 137390 0.660736 + . ID=CGI_10014739; scaffold416 TRF Tandem_Repeat 137325 137390 107 + . . scaffold416 GLEAN mRNA 139615 139743 0.657495 + . ID=CGI_10014740; scaffold416 TRF Tandem_Repeat 139615 139743 103 + . . scaffold416 GLEAN mRNA 139605 139727 0.657495 + . ID=CGI_10014740; scaffold416 TRF Tandem_Repeat 139605 139727 185 + . . scaffold416 GLEAN mRNA 150420 150460 0.657495 + . ID=CGI_10014740; scaffold416 TRF Tandem_Repeat 150420 150460 73 + . . scaffold416 GLEAN mRNA 160529 160708 0.657495 + . ID=CGI_10014740; scaffold416 WUBlastX LINE_RTE-X 160529 160708 76 - . . scaffold416 GLEAN mRNA 160535 160762 0.657495 + . ID=CGI_10014740; scaffold416 WUBlastX LINE_RTE-X 160535 160762 33 - . . scaffold416 GLEAN mRNA 186287 186481 0.76923 - . ID=CGI_10014741; scaffold416 TRF Tandem_Repeat 186287 186481 149 + . . scaffold416 GLEAN mRNA 186442 186798 0.76923 - . ID=CGI_10014741; scaffold416 TRF Tandem_Repeat 186442 186798 278 + . . scaffold416 GLEAN mRNA 268092 268124 0.995004 - . ID=CGI_10014744; scaffold416 TRF Tandem_Repeat 268092 268124 66 + . . scaffold416 GLEAN mRNA 319866 320123 0.999997 + . ID=CGI_10014748; scaffold416 WUBlastX DNA_hAT 319866 320123 63 + . . scaffold416 GLEAN mRNA 320337 320816 0.999997 + . ID=CGI_10014748; scaffold416 WUBlastX DNA_hAT 320337 320816 47 + . . scaffold416 GLEAN mRNA 328181 328555 0.999449 + . ID=CGI_10014749; scaffold416 WUBlastX DNA_Harbinger 328181 328555 62 + . . scaffold416 GLEAN mRNA 358314 359598 0.436824 - . ID=CGI_10014750; scaffold416 TRF Tandem_Repeat 358314 359598 1781 + . . scaffold416 GLEAN mRNA 359629 359688 0.436824 - . ID=CGI_10014750; scaffold416 TRF Tandem_Repeat 359629 359688 84 + . . scaffold416 GLEAN mRNA 407547 407583 0.637789 - . ID=CGI_10014752; scaffold416 TRF Tandem_Repeat 407547 407583 67 + . . scaffold542 GLEAN mRNA 4826 4972 1 + . ID=CGI_10014753; scaffold542 TRF Tandem_Repeat 4826 4972 73 + . . scaffold542 GLEAN mRNA 4888 5017 1 + . ID=CGI_10014753; scaffold542 TRF Tandem_Repeat 4888 5017 93 + . . scaffold542 GLEAN mRNA 36095 36119 1 + . ID=CGI_10014755; scaffold542 TRF Tandem_Repeat 36095 36119 50 + . . scaffold542 GLEAN mRNA 38857 38910 1 + . ID=CGI_10014755; scaffold542 TRF Tandem_Repeat 38857 38910 108 + . . scaffold542 GLEAN mRNA 58563 58615 0.937847 + . ID=CGI_10014757; scaffold542 TRF Tandem_Repeat 58563 58615 106 + . . scaffold542 GLEAN mRNA 85502 85548 0.999415 - . ID=CGI_10014759; scaffold542 TRF Tandem_Repeat 85502 85548 94 + . . scaffold542 GLEAN mRNA 93205 93264 0.999415 - . ID=CGI_10014759; scaffold542 TRF Tandem_Repeat 93205 93264 120 + . . scaffold542 GLEAN mRNA 95620 95668 0.999415 - . ID=CGI_10014759; scaffold542 TRF Tandem_Repeat 95620 95668 98 + . . scaffold542 GLEAN mRNA 84051 84173 0.999415 - . ID=CGI_10014759; scaffold542 WUBlastX LINE_RTE-X 84051 84173 26 + . . scaffold542 GLEAN mRNA 114011 114056 0.989881 - . ID=CGI_10014761; scaffold542 TRF Tandem_Repeat 114011 114056 92 + . . scaffold542 GLEAN mRNA 120956 121105 0.989881 - . ID=CGI_10014761; scaffold542 TRF Tandem_Repeat 120956 121105 147 + . . scaffold542 GLEAN mRNA 121104 121252 0.989881 - . ID=CGI_10014761; scaffold542 TRF Tandem_Repeat 121104 121252 97 + . . scaffold542 GLEAN mRNA 121368 121454 0.989881 - . ID=CGI_10014761; scaffold542 TRF Tandem_Repeat 121368 121454 113 + . . scaffold542 GLEAN mRNA 241831 241892 0.926479 - . ID=CGI_10014766; scaffold542 TRF Tandem_Repeat 241831 241892 70 + . . scaffold542 GLEAN mRNA 231791 232381 0.926479 - . ID=CGI_10014766; scaffold542 WUBlastX LINE_L1-Tx1 231791 232381 60 + . . scaffold542 GLEAN mRNA 271129 271310 0.573694 - . ID=CGI_10014767; scaffold542 TRF Tandem_Repeat 271129 271310 271 + . . scaffold542 GLEAN mRNA 314959 314998 0.999949 + . ID=CGI_10014768; scaffold542 TRF Tandem_Repeat 314959 314998 80 + . . scaffold542 GLEAN mRNA 319199 319238 0.999949 + . ID=CGI_10014768; scaffold542 TRF Tandem_Repeat 319199 319238 80 + . . scaffold542 GLEAN mRNA 320378 320465 0.999949 + . ID=CGI_10014768; scaffold542 TRF Tandem_Repeat 320378 320465 158 + . . scaffold542 GLEAN mRNA 324440 324580 0.999949 + . ID=CGI_10014768; scaffold542 TRF Tandem_Repeat 324440 324580 151 + . . scaffold542 GLEAN mRNA 325244 325279 0.999949 + . ID=CGI_10014768; scaffold542 TRF Tandem_Repeat 325244 325279 72 + . . scaffold542 GLEAN mRNA 339560 339604 0.72876 + . ID=CGI_10014769; scaffold542 TRF Tandem_Repeat 339560 339604 74 + . . scaffold542 GLEAN mRNA 378039 378094 1 + . ID=CGI_10014771; scaffold542 TRF Tandem_Repeat 378039 378094 112 + . . scaffold1588 GLEAN mRNA 69314 69354 0.840099 - . ID=CGI_10014772; scaffold1588 TRF Tandem_Repeat 69314 69354 57 + . . scaffold1588 GLEAN mRNA 75733 75921 0.840099 - . ID=CGI_10014772; scaffold1588 WUBlastX LINE_RTE-X 75733 75921 41 + . . scaffold1588 GLEAN mRNA 71969 72565 0.840099 - . ID=CGI_10014772; scaffold1588 WUBlastX LINE_L1 71969 72565 83 + . . scaffold1588 GLEAN mRNA 71729 72427 0.840099 - . ID=CGI_10014772; scaffold1588 WUBlastX LINE_RTE-X 71729 72427 160 + . . scaffold1588 GLEAN mRNA 71855 72454 0.840099 - . ID=CGI_10014772; scaffold1588 WUBlastX LINE_RTE-X 71855 72454 203 + . . scaffold1588 GLEAN mRNA 74325 74780 0.840099 - . ID=CGI_10014772; scaffold1588 WUBlastX LINE_RTE-X 74325 74780 163 + . . scaffold1588 GLEAN mRNA 75595 75903 0.840099 - . ID=CGI_10014772; scaffold1588 WUBlastX LINE_I 75595 75903 31 + . . scaffold1588 GLEAN mRNA 75733 75993 0.840099 - . ID=CGI_10014772; scaffold1588 WUBlastX LINE_RTE-X 75733 75993 28 + . . scaffold1588 GLEAN mRNA 74421 74927 0.840099 - . ID=CGI_10014772; scaffold1588 WUBlastX LINE_L1? 74421 74927 22 + . . scaffold1588 GLEAN mRNA 71969 72430 0.840099 - . ID=CGI_10014772; scaffold1588 WUBlastX LINE_RTE-X 71969 72430 230 + . . scaffold1588 GLEAN mRNA 201038 201298 0.738042 + . ID=CGI_10014777; scaffold1588 TRF Tandem_Repeat 201038 201298 330 + . . scaffold1588 GLEAN mRNA 213693 213729 0.794079 - . ID=CGI_10014779; scaffold1588 TRF Tandem_Repeat 213693 213729 74 + . . scaffold1588 GLEAN mRNA 237512 237711 0.999755 + . ID=CGI_10014781; scaffold1588 TRF Tandem_Repeat 237512 237711 220 + . . scaffold1588 GLEAN mRNA 240388 241344 0.999755 + . ID=CGI_10014781; scaffold1588 TRF Tandem_Repeat 240388 241344 1212 + . . scaffold1588 GLEAN mRNA 241517 241559 0.999755 + . ID=CGI_10014781; scaffold1588 TRF Tandem_Repeat 241517 241559 68 + . . scaffold1588 GLEAN mRNA 323503 323802 0.989218 - . ID=CGI_10014790; scaffold1588 WUBlastX DNA_TcMar-m44 323503 323802 185 - . . scaffold184 GLEAN mRNA 114205 114234 0.998011 - . ID=CGI_10014792; scaffold184 TRF Tandem_Repeat 114205 114234 60 + . . scaffold184 GLEAN mRNA 119743 119809 0.993363 + . ID=CGI_10014793; scaffold184 TRF Tandem_Repeat 119743 119809 134 + . . scaffold184 GLEAN mRNA 160590 161024 0.999999 - . ID=CGI_10014796; scaffold184 WUBlastX LINE_Penelope 160590 161024 303 - . . scaffold184 GLEAN mRNA 160503 161024 0.999999 - . ID=CGI_10014796; scaffold184 WUBlastX LINE_Penelope 160503 161024 67 - . . scaffold184 GLEAN mRNA 188790 188858 0.912721 - . ID=CGI_10014797; scaffold184 TRF Tandem_Repeat 188790 188858 138 + . . scaffold184 GLEAN mRNA 194183 194551 0.912721 - . ID=CGI_10014797; scaffold184 WUBlastX DNA_TcMar-Tc1 194183 194551 55 + . . scaffold184 GLEAN mRNA 194545 194868 0.912721 - . ID=CGI_10014797; scaffold184 WUBlastX DNA_TcMar-Tc1 194545 194868 117 + . . scaffold184 GLEAN mRNA 193968 194258 0.912721 - . ID=CGI_10014797; scaffold184 WUBlastX DNA_TcMar-Tc1 193968 194258 50 + . . scaffold184 GLEAN mRNA 193881 194294 0.912721 - . ID=CGI_10014797; scaffold184 WUBlastX DNA_TcMar-Tc1 193881 194294 26 + . . scaffold184 GLEAN mRNA 251291 251701 0.689082 + . ID=CGI_10014799; scaffold184 WUBlastX DNA_PiggyBac 251291 251701 57 - . . scaffold184 GLEAN mRNA 251800 251904 0.689082 + . ID=CGI_10014799; scaffold184 WUBlastX DNA_PiggyBac 251800 251904 24 - . . scaffold184 GLEAN mRNA 249479 249880 0.689082 + . ID=CGI_10014799; scaffold184 WUBlastX DNA_Merlin 249479 249880 111 + . . scaffold184 GLEAN mRNA 251429 251776 0.689082 + . ID=CGI_10014799; scaffold184 WUBlastX DNA_PiggyBac 251429 251776 183 - . . scaffold184 GLEAN mRNA 251800 251874 0.689082 + . ID=CGI_10014799; scaffold184 WUBlastX DNA_PiggyBac 251800 251874 28 - . . scaffold184 GLEAN mRNA 249263 249838 0.689082 + . ID=CGI_10014799; scaffold184 WUBlastX DNA_Merlin 249263 249838 99 + . . scaffold184 GLEAN mRNA 251393 251845 0.689082 + . ID=CGI_10014799; scaffold184 WUBlastX DNA_PiggyBac 251393 251845 117 - . . scaffold184 GLEAN mRNA 254388 255116 0.689082 + . ID=CGI_10014799; scaffold184 WUBlastX DNA_IS4EU 254388 255116 27 + . . scaffold184 GLEAN mRNA 265865 265922 0.544819 - . ID=CGI_10014800; scaffold184 TRF Tandem_Repeat 265865 265922 116 + . . scaffold184 GLEAN mRNA 299078 299106 0.999999 - . ID=CGI_10014801; scaffold184 TRF Tandem_Repeat 299078 299106 58 + . . scaffold184 GLEAN mRNA 386376 386443 0.99416 - . ID=CGI_10014802; scaffold184 TRF Tandem_Repeat 386376 386443 120 + . . scaffold184 GLEAN mRNA 399056 399114 0.99416 - . ID=CGI_10014802; scaffold184 TRF Tandem_Repeat 399056 399114 73 + . . scaffold184 GLEAN mRNA 399057 399198 0.99416 - . ID=CGI_10014802; scaffold184 TRF Tandem_Repeat 399057 399198 94 + . . scaffold184 GLEAN mRNA 399133 399198 0.99416 - . ID=CGI_10014802; scaffold184 TRF Tandem_Repeat 399133 399198 69 + . . scaffold184 GLEAN mRNA 399133 399264 0.99416 - . ID=CGI_10014802; scaffold184 TRF Tandem_Repeat 399133 399264 90 + . . scaffold184 GLEAN mRNA 399799 399884 0.99416 - . ID=CGI_10014802; scaffold184 TRF Tandem_Repeat 399799 399884 136 + . . scaffold184 GLEAN mRNA 401621 401745 0.99416 - . ID=CGI_10014802; scaffold184 TRF Tandem_Repeat 401621 401745 73 + . . scaffold184 GLEAN mRNA 402653 402721 0.99416 - . ID=CGI_10014802; scaffold184 TRF Tandem_Repeat 402653 402721 57 + . . scaffold1772 GLEAN mRNA 16220 16363 0.648545 - . ID=CGI_10014804; scaffold1772 WUBlastX DNA_IS4EU 16220 16363 21 - . . scaffold1772 GLEAN mRNA 16450 17163 0.648545 - . ID=CGI_10014804; scaffold1772 WUBlastX DNA_IS4EU 16450 17163 81 - . . scaffold1772 GLEAN mRNA 203959 204024 0.999554 - . ID=CGI_10014812; scaffold1772 TRF Tandem_Repeat 203959 204024 114 + . . scaffold1772 GLEAN mRNA 202107 202256 0.999554 - . ID=CGI_10014812; scaffold1772 WUBlastX LTR_DIRS 202107 202256 59 - . . scaffold1772 GLEAN mRNA 202486 202557 0.999554 - . ID=CGI_10014812; scaffold1772 WUBlastX LTR_DIRS 202486 202557 35 - . . scaffold1772 GLEAN mRNA 202134 202256 0.999554 - . ID=CGI_10014812; scaffold1772 WUBlastX LTR_DIRS 202134 202256 69 - . . scaffold1772 GLEAN mRNA 202625 203182 0.999554 - . ID=CGI_10014812; scaffold1772 WUBlastX LTR_DIRS 202625 203182 61 - . . scaffold1772 GLEAN mRNA 202265 202486 0.999554 - . ID=CGI_10014812; scaffold1772 WUBlastX LTR_DIRS 202265 202486 28 - . . scaffold1772 GLEAN mRNA 216844 216895 0.990767 - . ID=CGI_10014813; scaffold1772 TRF Tandem_Repeat 216844 216895 86 + . . scaffold1772 GLEAN mRNA 218370 218435 0.990767 - . ID=CGI_10014813; scaffold1772 TRF Tandem_Repeat 218370 218435 71 + . . scaffold1772 GLEAN mRNA 271325 272077 0.989419 + . ID=CGI_10014816; scaffold1772 TRF Tandem_Repeat 271325 272077 983 + . . scaffold1772 GLEAN mRNA 274462 274592 0.989419 + . ID=CGI_10014816; scaffold1772 TRF Tandem_Repeat 274462 274592 154 + . . scaffold1772 GLEAN mRNA 285707 286152 0.999674 + . ID=CGI_10014817; scaffold1772 TRF Tandem_Repeat 285707 286152 685 + . . scaffold1772 GLEAN mRNA 288529 288755 0.999674 + . ID=CGI_10014817; scaffold1772 TRF Tandem_Repeat 288529 288755 337 + . . scaffold1772 GLEAN mRNA 289274 289714 0.999674 + . ID=CGI_10014817; scaffold1772 TRF Tandem_Repeat 289274 289714 491 + . . scaffold1772 GLEAN mRNA 290459 291299 0.999674 + . ID=CGI_10014817; scaffold1772 TRF Tandem_Repeat 290459 291299 1179 + . . scaffold1772 GLEAN mRNA 291184 291254 0.999674 + . ID=CGI_10014817; scaffold1772 TRF Tandem_Repeat 291184 291254 52 + . . scaffold1772 GLEAN mRNA 375824 375850 0.98456 - . ID=CGI_10014820; scaffold1772 TRF Tandem_Repeat 375824 375850 54 + . . scaffold1772 GLEAN mRNA 376165 376200 0.98456 - . ID=CGI_10014820; scaffold1772 TRF Tandem_Repeat 376165 376200 54 + . . scaffold1772 GLEAN mRNA 378074 378098 0.98456 - . ID=CGI_10014820; scaffold1772 TRF Tandem_Repeat 378074 378098 50 + . . scaffold1772 GLEAN mRNA 402678 402860 1 + . ID=CGI_10014821; scaffold1772 WUBlastX LINE_L1 402678 403574 55 + . . scaffold689 GLEAN mRNA 118031 118038 1 - . ID=CGI_10014824; scaffold689 WUBlastX LINE_RTE-X 117856 118038 66 - . . scaffold689 GLEAN mRNA 118058 118420 1 - . ID=CGI_10014824; scaffold689 WUBlastX LINE_RTE-X 118058 118435 149 - . . scaffold689 GLEAN mRNA 167047 167108 0.999 - . ID=CGI_10014826; scaffold689 TRF Tandem_Repeat 167047 167108 124 + . . scaffold689 GLEAN mRNA 171398 171486 0.999 - . ID=CGI_10014826; scaffold689 TRF Tandem_Repeat 171398 171486 108 + . . scaffold689 GLEAN mRNA 168686 169219 0.999 - . ID=CGI_10014826; scaffold689 WUBlastX LINE_RTE-X 168686 169219 66 + . . scaffold689 GLEAN mRNA 166225 166281 0.999 - . ID=CGI_10014826; scaffold689 WUBlastX LINE_RTE-BovB 166225 166281 24 + . . scaffold689 GLEAN mRNA 166963 167013 0.999 - . ID=CGI_10014826; scaffold689 WUBlastX LINE_CR1 166963 167013 25 + . . scaffold689 GLEAN mRNA 169222 169749 0.999 - . ID=CGI_10014826; scaffold689 WUBlastX LINE_RTE-X 169222 169749 71 + . . scaffold689 GLEAN mRNA 167370 169031 0.999 - . ID=CGI_10014826; scaffold689 WUBlastX LINE_RTE-X 167370 169031 703 + . . scaffold689 GLEAN mRNA 269912 270187 0.998685 - . ID=CGI_10014829; scaffold689 WUBlastX LINE_R2-Hero 269912 270187 219 + . . scaffold689 GLEAN mRNA 269819 270187 0.998685 - . ID=CGI_10014829; scaffold689 WUBlastX LINE_R2-Hero 269819 270187 203 + . . scaffold689 GLEAN mRNA 345979 346044 0.991732 - . ID=CGI_10014831; scaffold689 TRF Tandem_Repeat 345979 346044 132 + . . scaffold689 GLEAN mRNA 351800 351851 0.991732 - . ID=CGI_10014831; scaffold689 TRF Tandem_Repeat 351800 351851 77 + . . scaffold689 GLEAN mRNA 357020 357970 0.991732 - . ID=CGI_10014831; scaffold689 WUBlastX LTR_Gypsy 357020 357970 249 + . . scaffold689 GLEAN mRNA 354999 355964 0.991732 - . ID=CGI_10014831; scaffold689 WUBlastX LTR_Gypsy 354999 355964 20 + . . scaffold689 GLEAN mRNA 355173 355958 0.991732 - . ID=CGI_10014831; scaffold689 WUBlastX LTR_Gypsy 355173 355958 392 + . . scaffold689 GLEAN mRNA 356234 357646 0.991732 - . ID=CGI_10014831; scaffold689 WUBlastX LTR_Gypsy 356234 357646 939 + . . scaffold689 GLEAN mRNA 355254 356144 0.991732 - . ID=CGI_10014831; scaffold689 WUBlastX LTR_Gypsy 355254 356144 88 + . . scaffold689 GLEAN mRNA 357056 357790 0.991732 - . ID=CGI_10014831; scaffold689 WUBlastX LTR_Gypsy-Cigr 357056 357790 335 + . . scaffold689 GLEAN mRNA 365189 366097 0.991732 - . ID=CGI_10014831; scaffold689 TRF Tandem_Repeat 365189 366097 1606 + . . scaffold689 GLEAN mRNA 381227 381390 0.9993 - . ID=CGI_10014832; scaffold689 TRF Tandem_Repeat 381227 381390 160 + . . scaffold689 GLEAN mRNA 381305 381391 0.9993 - . ID=CGI_10014832; scaffold689 TRF Tandem_Repeat 381305 381391 61 + . . scaffold689 GLEAN mRNA 381310 381622 0.9993 - . ID=CGI_10014832; scaffold689 TRF Tandem_Repeat 381310 381622 291 + . . scaffold689 GLEAN mRNA 381310 381647 0.9993 - . ID=CGI_10014832; scaffold689 TRF Tandem_Repeat 381310 381647 289 + . . scaffold689 GLEAN mRNA 387953 388205 0.9993 - . ID=CGI_10014832; scaffold689 TRF Tandem_Repeat 387953 388205 389 + . . scaffold767 GLEAN mRNA 34056 34118 0.999674 - . ID=CGI_10014837; scaffold767 TRF Tandem_Repeat 34056 34118 126 + . . scaffold767 GLEAN mRNA 41492 41516 0.999674 - . ID=CGI_10014837; scaffold767 TRF Tandem_Repeat 41492 41516 50 + . . scaffold767 GLEAN mRNA 53365 53396 0.678522 + . ID=CGI_10014838; scaffold767 TRF Tandem_Repeat 53365 53396 64 + . . scaffold767 GLEAN mRNA 53396 53437 0.678522 + . ID=CGI_10014838; scaffold767 TRF Tandem_Repeat 53396 53437 84 + . . scaffold767 GLEAN mRNA 65632 66483 1 - . ID=CGI_10014839; scaffold767 TRF Tandem_Repeat 65632 66483 903 + . . scaffold767 GLEAN mRNA 66658 66710 1 - . ID=CGI_10014839; scaffold767 TRF Tandem_Repeat 66658 66710 61 + . . scaffold767 GLEAN mRNA 66661 66718 1 - . ID=CGI_10014839; scaffold767 TRF Tandem_Repeat 66661 66718 89 + . . scaffold767 GLEAN mRNA 280140 280430 0.433091 + . ID=CGI_10014846; scaffold767 WUBlastX LINE_L1-Tx1 280140 280430 38 + . . scaffold767 GLEAN mRNA 280686 281090 0.433091 + . ID=CGI_10014846; scaffold767 WUBlastX LINE_L1 280686 281090 67 + . . scaffold767 GLEAN mRNA 280671 280916 0.433091 + . ID=CGI_10014846; scaffold767 WUBlastX LINE_L1-Tx1 280671 280916 85 + . . scaffold767 GLEAN mRNA 280245 280430 0.433091 + . ID=CGI_10014846; scaffold767 WUBlastX LINE_L1-Tx1 280245 280430 52 + . . scaffold767 GLEAN mRNA 313103 313170 1 + . ID=CGI_10014849; scaffold767 TRF Tandem_Repeat 313103 313170 82 + . . scaffold767 GLEAN mRNA 313129 313173 1 + . ID=CGI_10014849; scaffold767 TRF Tandem_Repeat 313129 313173 54 + . . scaffold767 GLEAN mRNA 326906 326973 0.808127 - . ID=CGI_10014850; scaffold767 TRF Tandem_Repeat 326906 326973 113 + . . scaffold767 GLEAN mRNA 320503 320532 0.808127 - . ID=CGI_10014850; scaffold767 WUBlastX LINE_CR1-L2 320503 320532 22 + . . scaffold767 GLEAN mRNA 320688 321728 0.808127 - . ID=CGI_10014850; scaffold767 WUBlastX LINE_RTE-X 320688 321728 47 + . . scaffold767 GLEAN mRNA 320883 321731 0.808127 - . ID=CGI_10014850; scaffold767 WUBlastX LINE_L2 320883 321731 623 + . . scaffold767 GLEAN mRNA 328327 328475 0.808127 - . ID=CGI_10014850; scaffold767 TRF Tandem_Repeat 328327 328475 90 + . . scaffold767 GLEAN mRNA 350619 350706 0.808127 - . ID=CGI_10014850; scaffold767 TRF Tandem_Repeat 350619 350706 68 + . . scaffold767 GLEAN mRNA 351694 352437 0.808127 - . ID=CGI_10014850; scaffold767 TRF Tandem_Repeat 351694 352437 898 + . . scaffold767 GLEAN mRNA 351694 352520 0.808127 - . ID=CGI_10014850; scaffold767 TRF Tandem_Repeat 351694 352520 775 + . . scaffold767 GLEAN mRNA 374897 374934 0.808127 - . ID=CGI_10014850; scaffold767 TRF Tandem_Repeat 374897 374934 58 + . . scaffold767 GLEAN mRNA 382069 382899 1 + . ID=CGI_10014851; scaffold767 TRF Tandem_Repeat 382069 382899 428 + . . scaffold767 GLEAN mRNA 382069 382786 1 + . ID=CGI_10014851; scaffold767 TRF Tandem_Repeat 382069 382786 731 + . . scaffold767 GLEAN mRNA 382225 382899 1 + . ID=CGI_10014851; scaffold767 TRF Tandem_Repeat 382225 382899 529 + . . scaffold767 GLEAN mRNA 395633 396208 1 - . ID=CGI_10014852; scaffold767 TRF Tandem_Repeat 395633 396208 114 + . . scaffold767 GLEAN mRNA 395873 396421 1 - . ID=CGI_10014852; scaffold767 TRF Tandem_Repeat 395873 396421 332 + . . scaffold767 GLEAN mRNA 398667 398709 1 - . ID=CGI_10014852; scaffold767 TRF Tandem_Repeat 398667 398709 86 + . . scaffold804 GLEAN mRNA 162168 162440 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX DNA_IS4EU 162168 162440 76 + . . scaffold804 GLEAN mRNA 162078 162572 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX DNA_IS4EU 162078 162572 32 + . . scaffold804 GLEAN mRNA 164439 164503 0.986312 - . ID=CGI_10014856; scaffold804 TRF Tandem_Repeat 164439 164503 85 + . . scaffold804 GLEAN mRNA 164444 164502 0.986312 - . ID=CGI_10014856; scaffold804 TRF Tandem_Repeat 164444 164502 82 + . . scaffold804 GLEAN mRNA 164448 164503 0.986312 - . ID=CGI_10014856; scaffold804 TRF Tandem_Repeat 164448 164503 67 + . . scaffold804 GLEAN mRNA 166894 167334 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX LTR_Gypsy 166894 167334 348 - . . scaffold804 GLEAN mRNA 167367 167933 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX LTR_Gypsy 167367 167933 296 - . . scaffold804 GLEAN mRNA 167352 167408 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX LTR_Gypsy 167352 167408 23 - . . scaffold804 GLEAN mRNA 169414 170139 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX LTR_Gypsy 169414 170139 90 - . . scaffold804 GLEAN mRNA 167932 169701 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX LTR_Gypsy 167932 169701 756 - . . scaffold804 GLEAN mRNA 170037 170303 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX LTR_Gypsy-Cigr 170037 170303 68 - . . scaffold804 GLEAN mRNA 169285 169914 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX LTR_Gypsy 169285 169914 158 - . . scaffold804 GLEAN mRNA 166121 166156 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX LTR_Gypsy 166121 166156 28 - . . scaffold804 GLEAN mRNA 167923 169386 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX LTR_Gypsy-Cigr 167923 169386 811 - . . scaffold804 GLEAN mRNA 166230 166892 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX LTR_Gypsy-Cigr 166230 166892 298 - . . scaffold804 GLEAN mRNA 173420 173465 0.935885 + . ID=CGI_10014858; scaffold804 TRF Tandem_Repeat 173420 173465 92 + . . scaffold804 GLEAN mRNA 178391 178666 0.935885 + . ID=CGI_10014858; scaffold804 WUBlastX LTR_Gypsy 178391 178666 43 - . . scaffold804 GLEAN mRNA 178693 178851 0.935885 + . ID=CGI_10014858; scaffold804 WUBlastX LTR_Gypsy 178693 178851 54 - . . scaffold804 GLEAN mRNA 178891 178998 0.935885 + . ID=CGI_10014858; scaffold804 WUBlastX LTR_Gypsy 178891 178998 24 - . . scaffold804 GLEAN mRNA 178849 178965 0.935885 + . ID=CGI_10014858; scaffold804 WUBlastX LTR_Gypsy 178849 178965 33 - . . scaffold804 GLEAN mRNA 179003 180130 0.935885 + . ID=CGI_10014858; scaffold804 WUBlastX LTR_Gypsy 179003 180130 373 - . . scaffold804 GLEAN mRNA 179544 180275 0.935885 + . ID=CGI_10014858; scaffold804 WUBlastX LTR_Gypsy 179544 180275 115 - . . scaffold804 GLEAN mRNA 272807 272844 0.920383 - . ID=CGI_10014862; scaffold804 TRF Tandem_Repeat 272807 272844 58 + . . scaffold804 GLEAN mRNA 385775 385831 1 - . ID=CGI_10014864; scaffold804 TRF Tandem_Repeat 385775 385831 114 + . . scaffold1722 GLEAN mRNA 13074 13151 0.51382 - . ID=CGI_10014865; scaffold1722 TRF Tandem_Repeat 13074 13151 101 + . . scaffold1722 GLEAN mRNA 13178 13942 0.51382 - . ID=CGI_10014865; scaffold1722 WUBlastX DNA_IS4EU 13178 13942 94 - . . scaffold1722 GLEAN mRNA 16598 16883 0.51382 - . ID=CGI_10014865; scaffold1722 TRF Tandem_Repeat 16598 16883 188 + . . scaffold1722 GLEAN mRNA 16625 16883 0.51382 - . ID=CGI_10014865; scaffold1722 TRF Tandem_Repeat 16625 16883 249 + . . scaffold1722 GLEAN mRNA 16625 16883 0.51382 - . ID=CGI_10014865; scaffold1722 TRF Tandem_Repeat 16625 16883 208 + . . scaffold1722 GLEAN mRNA 45140 45188 0.593383 + . ID=CGI_10014867; scaffold1722 TRF Tandem_Repeat 45140 45188 98 + . . scaffold1722 GLEAN mRNA 85342 85390 0.401705 + . ID=CGI_10014872; scaffold1722 TRF Tandem_Repeat 85342 85390 98 + . . scaffold1722 GLEAN mRNA 85462 85501 0.401705 + . ID=CGI_10014872; scaffold1722 TRF Tandem_Repeat 85462 85501 80 + . . scaffold1722 GLEAN mRNA 99201 99379 0.401705 + . ID=CGI_10014872; scaffold1722 TRF Tandem_Repeat 99201 99379 331 + . . scaffold1722 GLEAN mRNA 114492 114528 0.558395 + . ID=CGI_10014874; scaffold1722 TRF Tandem_Repeat 114492 114528 74 + . . scaffold1722 GLEAN mRNA 112386 112679 0.558395 + . ID=CGI_10014874; scaffold1722 WUBlastX LINE_L2 112386 112679 75 + . . scaffold1722 GLEAN mRNA 114492 114528 0.99733 - . ID=CGI_10014875; scaffold1722 TRF Tandem_Repeat 114492 114528 74 + . . scaffold1722 GLEAN mRNA 112386 112679 0.99733 - . ID=CGI_10014875; scaffold1722 WUBlastX LINE_L2 112386 112679 75 + . . scaffold1722 GLEAN mRNA 122320 122604 1 - . ID=CGI_10014876; scaffold1722 TRF Tandem_Repeat 122320 122604 520 + . . scaffold1722 GLEAN mRNA 124509 124765 1 - . ID=CGI_10014876; scaffold1722 TRF Tandem_Repeat 124509 124765 450 + . . scaffold1722 GLEAN mRNA 165416 165472 1 - . ID=CGI_10014878; scaffold1722 TRF Tandem_Repeat 165416 165472 107 + . . scaffold1722 GLEAN mRNA 242365 242630 0.654722 + . ID=CGI_10014885; scaffold1722 TRF Tandem_Repeat 242365 242630 379 + . . scaffold1722 GLEAN mRNA 242365 242630 0.654722 + . ID=CGI_10014885; scaffold1722 TRF Tandem_Repeat 242365 242630 396 + . . scaffold1722 GLEAN mRNA 244600 245169 0.963225 + . ID=CGI_10014886; scaffold1722 WUBlastX LINE_R2-Hero 244600 245169 427 - . . scaffold1722 GLEAN mRNA 254847 254911 0.84036 - . ID=CGI_10014887; scaffold1722 TRF Tandem_Repeat 254847 254911 130 + . . scaffold1722 GLEAN mRNA 310245 311006 0.999949 - . ID=CGI_10014888; scaffold1722 WUBlastX LINE_RTE-X 310245 311006 142 - . . scaffold1722 GLEAN mRNA 310365 311876 0.999949 - . ID=CGI_10014888; scaffold1722 WUBlastX LINE_RTE-X 310365 311876 561 - . . scaffold152 GLEAN mRNA 62932 63847 0.999676 - . ID=CGI_10014894; scaffold152 TRF Tandem_Repeat 62932 63847 1329 + . . scaffold152 GLEAN mRNA 64604 64734 0.999676 - . ID=CGI_10014894; scaffold152 TRF Tandem_Repeat 64604 64734 110 + . . scaffold152 GLEAN mRNA 74822 74851 0.999676 - . ID=CGI_10014894; scaffold152 TRF Tandem_Repeat 74822 74851 60 + . . scaffold152 GLEAN mRNA 74536 74691 0.999676 - . ID=CGI_10014894; scaffold152 WUBlastX LINE_CR1 74536 74691 78 + . . scaffold152 GLEAN mRNA 74261 74626 0.999676 - . ID=CGI_10014894; scaffold152 WUBlastX LINE_CR1-L2 74261 74626 78 + . . scaffold152 GLEAN mRNA 74201 74530 0.999676 - . ID=CGI_10014894; scaffold152 WUBlastX LINE_CR1 74201 74530 230 + . . scaffold152 GLEAN mRNA 298151 298248 1 - . ID=CGI_10014898; scaffold152 TRF Tandem_Repeat 298151 298248 103 + . . scaffold152 GLEAN mRNA 298151 298248 1 - . ID=CGI_10014898; scaffold152 TRF Tandem_Repeat 298151 298248 103 + . . scaffold152 GLEAN mRNA 335060 335581 0.295405 + . ID=CGI_10014899; scaffold152 WUBlastX LINE_L1-Tx1 335060 335581 223 - . . scaffold152 GLEAN mRNA 336503 337123 0.295405 + . ID=CGI_10014899; scaffold152 WUBlastX LINE_L1-Tx1 336503 337123 185 - . . scaffold152 GLEAN mRNA 342560 342952 0.295405 + . ID=CGI_10014899; scaffold152 WUBlastX LTR_Ngaro 342560 342952 88 + . . scaffold152 GLEAN mRNA 335072 335674 0.295405 + . ID=CGI_10014899; scaffold152 WUBlastX LINE_L1-Tx1 335072 335674 103 - . . scaffold152 GLEAN mRNA 348045 348092 0.295405 + . ID=CGI_10014899; scaffold152 TRF Tandem_Repeat 348045 348092 55 + . . scaffold152 GLEAN mRNA 348059 348108 0.295405 + . ID=CGI_10014899; scaffold152 TRF Tandem_Repeat 348059 348108 50 + . . scaffold152 GLEAN mRNA 336503 337123 0.992563 - . ID=CGI_10014900; scaffold152 WUBlastX LINE_L1-Tx1 336503 337123 185 - . . scaffold1490 GLEAN mRNA 8831 8878 0.523219 + . ID=CGI_10014903; scaffold1490 TRF Tandem_Repeat 8831 8878 64 + . . scaffold1490 GLEAN mRNA 10449 10496 0.523219 + . ID=CGI_10014903; scaffold1490 TRF Tandem_Repeat 10449 10496 96 + . . scaffold1490 GLEAN mRNA 12013 12134 0.523219 + . ID=CGI_10014903; scaffold1490 TRF Tandem_Repeat 12013 12134 217 + . . scaffold1490 GLEAN mRNA 99869 100676 0.842441 + . ID=CGI_10014909; scaffold1490 TRF Tandem_Repeat 99869 100676 1062 + . . scaffold1490 GLEAN mRNA 101852 101880 0.842441 + . ID=CGI_10014909; scaffold1490 TRF Tandem_Repeat 101852 101880 58 + . . scaffold1490 GLEAN mRNA 140641 140675 0.325964 - . ID=CGI_10014910; scaffold1490 TRF Tandem_Repeat 140641 140675 61 + . . scaffold1490 GLEAN mRNA 189129 189364 0.659104 + . ID=CGI_10014912; scaffold1490 TRF Tandem_Repeat 189129 189364 359 + . . scaffold1490 GLEAN mRNA 190642 192307 0.659104 + . ID=CGI_10014912; scaffold1490 TRF Tandem_Repeat 190642 192307 2093 + . . scaffold1490 GLEAN mRNA 195936 196421 0.659104 + . ID=CGI_10014912; scaffold1490 TRF Tandem_Repeat 195936 196421 632 + . . scaffold1490 GLEAN mRNA 198938 200102 0.659104 + . ID=CGI_10014912; scaffold1490 TRF Tandem_Repeat 198938 200102 1358 + . . scaffold1490 GLEAN mRNA 198938 200100 0.659104 + . ID=CGI_10014912; scaffold1490 TRF Tandem_Repeat 198938 200100 1372 + . . scaffold1490 GLEAN mRNA 206021 206121 0.659104 + . ID=CGI_10014912; scaffold1490 TRF Tandem_Repeat 206021 206121 157 + . . scaffold1490 GLEAN mRNA 206358 206466 0.659104 + . ID=CGI_10014912; scaffold1490 TRF Tandem_Repeat 206358 206466 148 + . . scaffold1490 GLEAN mRNA 201456 201608 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 201456 201608 40 + . . scaffold1490 GLEAN mRNA 201743 201994 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 201743 201994 37 + . . scaffold1490 GLEAN mRNA 202186 202485 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 202186 202485 213 + . . scaffold1490 GLEAN mRNA 202713 202949 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 202713 202949 117 + . . scaffold1490 GLEAN mRNA 206842 207033 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 206842 207033 70 + . . scaffold1490 GLEAN mRNA 207395 208099 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 207395 208099 88 + . . scaffold1490 GLEAN mRNA 207392 207880 0.659104 + . ID=CGI_10014912; scaffold1490 WUBlastX DNA_NOF 207392 207880 104 + . . scaffold1490 GLEAN mRNA 213533 215018 0.659104 + . ID=CGI_10014912; scaffold1490 TRF Tandem_Repeat 213533 215018 2098 + . . scaffold1490 GLEAN mRNA 213498 215018 0.659104 + . ID=CGI_10014912; scaffold1490 TRF Tandem_Repeat 213498 215018 1965 + . . scaffold1490 GLEAN mRNA 217447 217768 0.659104 + . ID=CGI_10014912; scaffold1490 TRF Tandem_Repeat 217447 217768 608 + . . scaffold1490 GLEAN mRNA 222367 222730 0.659104 + . ID=CGI_10014912; scaffold1490 TRF Tandem_Repeat 222367 222730 422 + . . scaffold1490 GLEAN mRNA 229561 229859 0.998976 + . ID=CGI_10014914; scaffold1490 TRF Tandem_Repeat 229561 229859 292 + . . scaffold1490 GLEAN mRNA 229561 229863 0.998976 + . ID=CGI_10014914; scaffold1490 TRF Tandem_Repeat 229561 229863 298 + . . scaffold1490 GLEAN mRNA 229925 230317 0.998976 + . ID=CGI_10014914; scaffold1490 TRF Tandem_Repeat 229925 230317 680 + . . scaffold1490 GLEAN mRNA 229925 230807 0.998976 + . ID=CGI_10014914; scaffold1490 TRF Tandem_Repeat 229925 230807 687 + . . scaffold1490 GLEAN mRNA 230317 230807 0.998976 + . ID=CGI_10014914; scaffold1490 TRF Tandem_Repeat 230317 230807 716 + . . scaffold1490 GLEAN mRNA 230807 231367 0.998976 + . ID=CGI_10014914; scaffold1490 TRF Tandem_Repeat 230807 231367 713 + . . scaffold1490 GLEAN mRNA 236735 238022 0.998976 + . ID=CGI_10014914; scaffold1490 TRF Tandem_Repeat 236735 238022 1672 + . . scaffold1490 GLEAN mRNA 236735 238334 0.998976 + . ID=CGI_10014914; scaffold1490 TRF Tandem_Repeat 236735 238334 2080 + . . scaffold1490 GLEAN mRNA 238028 238334 0.998976 + . ID=CGI_10014914; scaffold1490 TRF Tandem_Repeat 238028 238334 479 + . . scaffold1490 GLEAN mRNA 239383 240234 0.998976 + . ID=CGI_10014914; scaffold1490 TRF Tandem_Repeat 239383 240234 1047 + . . scaffold1490 GLEAN mRNA 245854 246304 0.998976 + . ID=CGI_10014914; scaffold1490 TRF Tandem_Repeat 245854 246304 861 + . . scaffold1490 GLEAN mRNA 275128 275504 0.998207 + . ID=CGI_10014916; scaffold1490 TRF Tandem_Repeat 275128 275504 578 + . . scaffold1490 GLEAN mRNA 277268 277506 0.998207 + . ID=CGI_10014916; scaffold1490 TRF Tandem_Repeat 277268 277506 207 + . . scaffold1490 GLEAN mRNA 277234 277506 0.998207 + . ID=CGI_10014916; scaffold1490 TRF Tandem_Repeat 277234 277506 268 + . . scaffold1490 GLEAN mRNA 284587 284979 0.833888 - . ID=CGI_10014917; scaffold1490 TRF Tandem_Repeat 284587 284979 137 + . . scaffold1490 GLEAN mRNA 284699 284956 0.833888 - . ID=CGI_10014917; scaffold1490 TRF Tandem_Repeat 284699 284956 113 + . . scaffold1490 GLEAN mRNA 302385 302564 1 + . ID=CGI_10014918; scaffold1490 TRF Tandem_Repeat 302385 302564 227 + . . scaffold1490 GLEAN mRNA 314741 315353 1 + . ID=CGI_10014918; scaffold1490 TRF Tandem_Repeat 314741 315353 744 + . . scaffold1490 GLEAN mRNA 331736 332000 0.819804 + . ID=CGI_10014920; scaffold1490 TRF Tandem_Repeat 331736 332000 442 + . . scaffold1490 GLEAN mRNA 337622 337743 0.819804 + . ID=CGI_10014920; scaffold1490 TRF Tandem_Repeat 337622 337743 140 + . . scaffold1490 GLEAN mRNA 337622 338192 0.819804 + . ID=CGI_10014920; scaffold1490 TRF Tandem_Repeat 337622 338192 167 + . . scaffold1490 GLEAN mRNA 337804 338192 0.819804 + . ID=CGI_10014920; scaffold1490 TRF Tandem_Repeat 337804 338192 256 + . . scaffold1490 GLEAN mRNA 337637 338185 0.819804 + . ID=CGI_10014920; scaffold1490 TRF Tandem_Repeat 337637 338185 270 + . . scaffold1490 GLEAN mRNA 337622 338192 0.819804 + . ID=CGI_10014920; scaffold1490 TRF Tandem_Repeat 337622 338192 290 + . . scaffold1490 GLEAN mRNA 337802 338192 0.819804 + . ID=CGI_10014920; scaffold1490 TRF Tandem_Repeat 337802 338192 284 + . . scaffold1490 GLEAN mRNA 353647 353768 0.819804 + . ID=CGI_10014920; scaffold1490 TRF Tandem_Repeat 353647 353768 115 + . . scaffold1490 GLEAN mRNA 353827 354416 0.819804 + . ID=CGI_10014920; scaffold1490 TRF Tandem_Repeat 353827 354416 496 + . . scaffold1490 GLEAN mRNA 353960 354407 0.819804 + . ID=CGI_10014920; scaffold1490 TRF Tandem_Repeat 353960 354407 613 + . . scaffold1490 GLEAN mRNA 378019 378049 0.920012 + . ID=CGI_10014923; scaffold1490 TRF Tandem_Repeat 378019 378049 62 + . . scaffold1490 GLEAN mRNA 384035 384073 0.920012 + . ID=CGI_10014923; scaffold1490 TRF Tandem_Repeat 384035 384073 60 + . . scaffold1490 GLEAN mRNA 392935 393474 0.920012 + . ID=CGI_10014923; scaffold1490 WUBlastX LINE_L1 392935 393474 30 + . . scaffold1354 GLEAN mRNA 102973 103949 0.999996 - . ID=CGI_10014929; scaffold1354 TRF Tandem_Repeat 102973 103949 1305 + . . scaffold1354 GLEAN mRNA 104153 104775 0.999996 - . ID=CGI_10014929; scaffold1354 TRF Tandem_Repeat 104153 104775 799 + . . scaffold1354 GLEAN mRNA 105300 105670 0.999996 - . ID=CGI_10014929; scaffold1354 TRF Tandem_Repeat 105300 105670 425 + . . scaffold1354 GLEAN mRNA 108059 108175 0.999996 - . ID=CGI_10014929; scaffold1354 TRF Tandem_Repeat 108059 108175 189 + . . scaffold1354 GLEAN mRNA 108204 108413 0.999996 - . ID=CGI_10014929; scaffold1354 TRF Tandem_Repeat 108204 108413 251 + . . scaffold1354 GLEAN mRNA 110273 110605 0.999996 - . ID=CGI_10014929; scaffold1354 TRF Tandem_Repeat 110273 110605 386 + . . scaffold1354 GLEAN mRNA 111115 111432 0.999996 - . ID=CGI_10014929; scaffold1354 TRF Tandem_Repeat 111115 111432 573 + . . scaffold1354 GLEAN mRNA 117496 117530 0.801523 + . ID=CGI_10014930; scaffold1354 TRF Tandem_Repeat 117496 117530 54 + . . scaffold1354 GLEAN mRNA 123395 123911 0.801523 + . ID=CGI_10014930; scaffold1354 TRF Tandem_Repeat 123395 123911 529 + . . scaffold1354 GLEAN mRNA 125483 125887 0.801523 + . ID=CGI_10014930; scaffold1354 TRF Tandem_Repeat 125483 125887 222 + . . scaffold1354 GLEAN mRNA 125800 126122 0.801523 + . ID=CGI_10014930; scaffold1354 TRF Tandem_Repeat 125800 126122 448 + . . scaffold1354 GLEAN mRNA 125483 126158 0.801523 + . ID=CGI_10014930; scaffold1354 TRF Tandem_Repeat 125483 126158 304 + . . scaffold1354 GLEAN mRNA 134127 134245 0.929252 - . ID=CGI_10014931; scaffold1354 TRF Tandem_Repeat 134127 134245 130 + . . scaffold1354 GLEAN mRNA 146571 146604 0.453594 - . ID=CGI_10014932; scaffold1354 TRF Tandem_Repeat 146571 146604 50 + . . scaffold1354 GLEAN mRNA 175812 176026 0.9991 - . ID=CGI_10014934; scaffold1354 TRF Tandem_Repeat 175812 176026 134 + . . scaffold1354 GLEAN mRNA 170034 170225 0.9991 - . ID=CGI_10014934; scaffold1354 WUBlastX LINE_Jockey 170034 170225 24 - . . scaffold1354 GLEAN mRNA 174521 174682 0.9991 - . ID=CGI_10014934; scaffold1354 WUBlastX LINE_DRE 174521 174682 26 - . . scaffold1354 GLEAN mRNA 171709 174201 0.9991 - . ID=CGI_10014934; scaffold1354 WUBlastX LINE_L1-Tx1 171709 174201 1162 - . . scaffold1354 GLEAN mRNA 174154 174267 0.9991 - . ID=CGI_10014934; scaffold1354 WUBlastX LINE_L2 174154 174267 21 - . . scaffold1354 GLEAN mRNA 170733 170828 0.9991 - . ID=CGI_10014934; scaffold1354 WUBlastX LINE_L1-Tx1 170733 170828 32 - . . scaffold1354 GLEAN mRNA 170130 170249 0.9991 - . ID=CGI_10014934; scaffold1354 WUBlastX LINE_R1 170130 170249 22 - . . scaffold1354 GLEAN mRNA 174082 174249 0.9991 - . ID=CGI_10014934; scaffold1354 WUBlastX LINE_L2 174082 174249 31 - . . scaffold1354 GLEAN mRNA 179822 179860 0.889923 - . ID=CGI_10014935; scaffold1354 TRF Tandem_Repeat 179822 179860 78 + . . scaffold1354 GLEAN mRNA 187339 188128 1 + . ID=CGI_10014936; scaffold1354 TRF Tandem_Repeat 187339 188128 1119 + . . scaffold1354 GLEAN mRNA 187850 188006 1 + . ID=CGI_10014936; scaffold1354 TRF Tandem_Repeat 187850 188006 86 + . . scaffold1354 GLEAN mRNA 187347 188230 1 + . ID=CGI_10014936; scaffold1354 TRF Tandem_Repeat 187347 188230 713 + . . scaffold1354 GLEAN mRNA 203634 205069 0.943034 - . ID=CGI_10014937; scaffold1354 TRF Tandem_Repeat 203634 205069 817 + . . scaffold1354 GLEAN mRNA 203634 205069 0.943034 - . ID=CGI_10014937; scaffold1354 TRF Tandem_Repeat 203634 205069 1018 + . . scaffold1354 GLEAN mRNA 203634 205069 0.943034 - . ID=CGI_10014937; scaffold1354 TRF Tandem_Repeat 203634 205069 954 + . . scaffold1354 GLEAN mRNA 216075 216312 0.997256 + . ID=CGI_10014938; scaffold1354 TRF Tandem_Repeat 216075 216312 458 + . . scaffold1354 GLEAN mRNA 219308 219594 0.997256 + . ID=CGI_10014938; scaffold1354 TRF Tandem_Repeat 219308 219594 439 + . . scaffold1354 GLEAN mRNA 219308 219594 0.997256 + . ID=CGI_10014938; scaffold1354 TRF Tandem_Repeat 219308 219594 448 + . . scaffold1354 GLEAN mRNA 230047 231132 0.997256 + . ID=CGI_10014938; scaffold1354 TRF Tandem_Repeat 230047 231132 1310 + . . scaffold1354 GLEAN mRNA 238983 239222 0.997256 + . ID=CGI_10014938; scaffold1354 TRF Tandem_Repeat 238983 239222 426 + . . scaffold1354 GLEAN mRNA 275246 275274 1 - . ID=CGI_10014939; scaffold1354 TRF Tandem_Repeat 275246 275274 58 + . . scaffold1354 GLEAN mRNA 276018 277071 1 - . ID=CGI_10014939; scaffold1354 TRF Tandem_Repeat 276018 277071 591 + . . scaffold1354 GLEAN mRNA 349429 350464 0.998709 + . ID=CGI_10014943; scaffold1354 TRF Tandem_Repeat 349429 350464 694 + . . scaffold1354 GLEAN mRNA 349583 350470 0.998709 + . ID=CGI_10014943; scaffold1354 TRF Tandem_Repeat 349583 350470 711 + . . scaffold1354 GLEAN mRNA 353759 353798 0.998709 + . ID=CGI_10014943; scaffold1354 TRF Tandem_Repeat 353759 353798 53 + . . scaffold1354 GLEAN mRNA 370898 370944 0.32817 + . ID=CGI_10014945; scaffold1354 TRF Tandem_Repeat 370898 370944 94 + . . scaffold655 GLEAN mRNA 203222 203638 0.819461 + . ID=CGI_10014950; scaffold655 WUBlastX DNA_Kolobok-Hyd 203222 203638 36 + . . scaffold655 GLEAN mRNA 208155 210845 0.998219 + . ID=CGI_10014952; scaffold655 WUBlastX LINE_L1-Tx1 208155 210845 1239 + . . scaffold655 GLEAN mRNA 207939 209108 0.998219 + . ID=CGI_10014952; scaffold655 WUBlastX LINE_CR1 207939 209108 28 + . . scaffold655 GLEAN mRNA 206657 206752 0.998219 + . ID=CGI_10014952; scaffold655 WUBlastX LINE_L1 206657 206752 22 + . . scaffold655 GLEAN mRNA 252608 252757 0.75347 - . ID=CGI_10014955; scaffold655 TRF Tandem_Repeat 252608 252757 273 + . . scaffold655 GLEAN mRNA 255507 255555 0.75347 - . ID=CGI_10014955; scaffold655 TRF Tandem_Repeat 255507 255555 98 + . . scaffold655 GLEAN mRNA 257128 257173 0.75347 - . ID=CGI_10014955; scaffold655 TRF Tandem_Repeat 257128 257173 92 + . . scaffold655 GLEAN mRNA 285769 285802 0.999825 - . ID=CGI_10014957; scaffold655 TRF Tandem_Repeat 285769 285802 68 + . . scaffold655 GLEAN mRNA 278520 278556 0.999825 - . ID=CGI_10014957; scaffold655 TRF Tandem_Repeat 278520 278556 67 + . . scaffold655 GLEAN mRNA 289345 289377 0.783926 + . ID=CGI_10014958; scaffold655 TRF Tandem_Repeat 289345 289377 66 + . . scaffold655 GLEAN mRNA 307212 307256 0.783926 + . ID=CGI_10014958; scaffold655 TRF Tandem_Repeat 307212 307256 90 + . . scaffold655 GLEAN mRNA 308035 308148 0.783926 + . ID=CGI_10014958; scaffold655 TRF Tandem_Repeat 308035 308148 143 + . . scaffold655 GLEAN mRNA 308644 308690 0.783926 + . ID=CGI_10014958; scaffold655 TRF Tandem_Repeat 308644 308690 69 + . . scaffold655 GLEAN mRNA 308772 309151 0.783926 + . ID=CGI_10014958; scaffold655 TRF Tandem_Repeat 308772 309151 519 + . . scaffold655 GLEAN mRNA 315731 315773 0.783926 + . ID=CGI_10014958; scaffold655 TRF Tandem_Repeat 315731 315773 77 + . . scaffold655 GLEAN mRNA 320876 321385 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_CR1-L2 320876 321385 214 - . . scaffold655 GLEAN mRNA 318302 318880 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_CR1 318302 318880 90 - . . scaffold655 GLEAN mRNA 312352 312705 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_RTE-BovB 312352 312705 60 - . . scaffold655 GLEAN mRNA 311920 312471 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_RTE-BovB 311920 312471 24 - . . scaffold655 GLEAN mRNA 316551 316769 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_CR1-L2 316551 316769 22 - . . scaffold655 GLEAN mRNA 319781 320056 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_CR1-L2 319781 320056 22 - . . scaffold655 GLEAN mRNA 316428 316733 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_L2 316428 316733 62 - . . scaffold655 GLEAN mRNA 317070 318479 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_L2 317070 318479 427 - . . scaffold655 GLEAN mRNA 318302 318766 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_L2 318302 318766 239 - . . scaffold655 GLEAN mRNA 318970 319449 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_L2 318970 319449 148 - . . scaffold655 GLEAN mRNA 319454 319960 0.783926 + . ID=CGI_10014958; scaffold655 WUBlastX LINE_L2 319454 319960 128 - . . scaffold655 GLEAN mRNA 342222 342266 0.992485 + . ID=CGI_10014960; scaffold655 TRF Tandem_Repeat 342222 342266 54 + . . scaffold655 GLEAN mRNA 342224 342260 0.992485 + . ID=CGI_10014960; scaffold655 TRF Tandem_Repeat 342224 342260 65 + . . scaffold655 GLEAN mRNA 343740 343785 0.992485 + . ID=CGI_10014960; scaffold655 TRF Tandem_Repeat 343740 343785 83 + . . scaffold655 GLEAN mRNA 346555 346824 0.992485 + . ID=CGI_10014960; scaffold655 TRF Tandem_Repeat 346555 346824 454 + . . scaffold655 GLEAN mRNA 347938 349057 0.992485 + . ID=CGI_10014960; scaffold655 TRF Tandem_Repeat 347938 349057 1357 + . . scaffold655 GLEAN mRNA 349228 349273 0.992485 + . ID=CGI_10014960; scaffold655 TRF Tandem_Repeat 349228 349273 74 + . . scaffold655 GLEAN mRNA 374190 374230 0.997997 + . ID=CGI_10014961; scaffold655 TRF Tandem_Repeat 374190 374230 82 + . . scaffold655 GLEAN mRNA 410008 410964 0.999999 - . ID=CGI_10014963; scaffold655 WUBlastX LTR_Gypsy 409987 410994 637 - . . scaffold43988 GLEAN mRNA 60852 61379 0.999886 - . ID=CGI_10014965; scaffold43988 WUBlastX LINE_RTE-X 60852 61379 142 - . . scaffold43988 GLEAN mRNA 60987 61370 0.999886 - . ID=CGI_10014965; scaffold43988 WUBlastX LINE_RTE-X 60987 61370 167 - . . scaffold43988 GLEAN mRNA 74232 74268 0.528864 - . ID=CGI_10014967; scaffold43988 TRF Tandem_Repeat 74232 74268 74 + . . scaffold43988 GLEAN mRNA 81146 81196 0.999323 + . ID=CGI_10014968; scaffold43988 TRF Tandem_Repeat 81146 81196 102 + . . scaffold43988 GLEAN mRNA 328995 330514 0.999676 - . ID=CGI_10014976; scaffold43988 TRF Tandem_Repeat 328995 330514 1924 + . . scaffold43988 GLEAN mRNA 349213 349483 0.650923 - . ID=CGI_10014977; scaffold43988 TRF Tandem_Repeat 349213 349483 398 + . . scaffold43988 GLEAN mRNA 357697 357761 1 - . ID=CGI_10014979; scaffold43988 TRF Tandem_Repeat 357697 357761 130 + . . scaffold43988 GLEAN mRNA 359179 359218 1 - . ID=CGI_10014979; scaffold43988 TRF Tandem_Repeat 359179 359218 62 + . . scaffold43988 GLEAN mRNA 373622 373647 0.439001 - . ID=CGI_10014981; scaffold43988 TRF Tandem_Repeat 373622 373647 52 + . . scaffold43988 GLEAN mRNA 411060 411123 0.672492 + . ID=CGI_10014984; scaffold43988 TRF Tandem_Repeat 411060 411123 128 + . . scaffold1232 GLEAN mRNA 62525 62833 0.999898 - . ID=CGI_10014987; scaffold1232 WUBlastX LTR_Ngaro 62525 62833 44 + . . scaffold1232 GLEAN mRNA 62393 62680 0.999898 - . ID=CGI_10014987; scaffold1232 WUBlastX LTR_Ngaro 62393 62680 36 + . . scaffold1232 GLEAN mRNA 62444 62680 0.999898 - . ID=CGI_10014987; scaffold1232 WUBlastX LTR_Ngaro 62444 62680 53 + . . scaffold1232 GLEAN mRNA 119442 119471 0.999672 - . ID=CGI_10014997; scaffold1232 TRF Tandem_Repeat 119442 119471 60 + . . scaffold1232 GLEAN mRNA 125389 125741 0.999672 - . ID=CGI_10014997; scaffold1232 TRF Tandem_Repeat 125389 125741 253 + . . scaffold1232 GLEAN mRNA 125389 125741 0.999672 - . ID=CGI_10014997; scaffold1232 TRF Tandem_Repeat 125389 125741 323 + . . scaffold1232 GLEAN mRNA 157368 157405 0.999672 - . ID=CGI_10014997; scaffold1232 TRF Tandem_Repeat 157368 157405 67 + . . scaffold1232 GLEAN mRNA 157368 157405 1 + . ID=CGI_10014999; scaffold1232 TRF Tandem_Repeat 157368 157405 67 + . . scaffold1232 GLEAN mRNA 190796 190830 1 + . ID=CGI_10015002; scaffold1232 TRF Tandem_Repeat 190796 190830 70 + . . scaffold1232 GLEAN mRNA 217388 217418 0.990262 + . ID=CGI_10015005; scaffold1232 TRF Tandem_Repeat 217388 217418 53 + . . scaffold43986 GLEAN mRNA 1726 1771 0.999994 + . ID=CGI_10015011; scaffold43986 TRF Tandem_Repeat 1726 1771 83 + . . scaffold43986 GLEAN mRNA 6936 6977 0.93772 - . ID=CGI_10015012; scaffold43986 TRF Tandem_Repeat 6936 6977 84 + . . scaffold43986 GLEAN mRNA 19110 19168 0.93772 - . ID=CGI_10015012; scaffold43986 TRF Tandem_Repeat 19110 19168 118 + . . scaffold43986 GLEAN mRNA 89863 89896 0.999675 - . ID=CGI_10015020; scaffold43986 TRF Tandem_Repeat 89863 89896 68 + . . scaffold43986 GLEAN mRNA 91903 92027 0.999675 - . ID=CGI_10015020; scaffold43986 TRF Tandem_Repeat 91903 92027 225 + . . scaffold43986 GLEAN mRNA 104907 104957 1 - . ID=CGI_10015022; scaffold43986 TRF Tandem_Repeat 104907 104957 102 + . . scaffold43986 GLEAN mRNA 163213 163270 0.530877 + . ID=CGI_10015026; scaffold43986 TRF Tandem_Repeat 163213 163270 73 + . . scaffold43986 GLEAN mRNA 163214 163267 0.530877 + . ID=CGI_10015026; scaffold43986 TRF Tandem_Repeat 163214 163267 56 + . . scaffold43986 GLEAN mRNA 164789 164826 0.530877 + . ID=CGI_10015026; scaffold43986 TRF Tandem_Repeat 164789 164826 76 + . . scaffold43986 GLEAN mRNA 165528 165562 0.530877 + . ID=CGI_10015026; scaffold43986 TRF Tandem_Repeat 165528 165562 70 + . . scaffold43986 GLEAN mRNA 166415 166439 0.530877 + . ID=CGI_10015026; scaffold43986 TRF Tandem_Repeat 166415 166439 50 + . . scaffold43986 GLEAN mRNA 243671 244584 0.978209 + . ID=CGI_10015030; scaffold43986 TRF Tandem_Repeat 243671 244584 989 + . . scaffold43986 GLEAN mRNA 253990 254150 0.978838 + . ID=CGI_10015031; scaffold43986 TRF Tandem_Repeat 253990 254150 277 + . . scaffold43986 GLEAN mRNA 283629 283659 0.999999 - . ID=CGI_10015032; scaffold43986 TRF Tandem_Repeat 283629 283659 62 + . . scaffold43986 GLEAN mRNA 287882 287923 0.999999 - . ID=CGI_10015032; scaffold43986 TRF Tandem_Repeat 287882 287923 66 + . . scaffold43986 GLEAN mRNA 290280 290310 0.999999 - . ID=CGI_10015032; scaffold43986 TRF Tandem_Repeat 290280 290310 53 + . . scaffold43986 GLEAN mRNA 327149 327193 0.999999 + . ID=CGI_10015033; scaffold43986 TRF Tandem_Repeat 327149 327193 90 + . . scaffold43986 GLEAN mRNA 329643 329688 0.999999 + . ID=CGI_10015033; scaffold43986 TRF Tandem_Repeat 329643 329688 92 + . . scaffold43986 GLEAN mRNA 334372 334528 0.999999 + . ID=CGI_10015033; scaffold43986 TRF Tandem_Repeat 334372 334528 194 + . . scaffold43986 GLEAN mRNA 387189 389708 0.985724 - . ID=CGI_10015036; scaffold43986 WUBlastX LTR_Pao 387189 389708 1753 - . . scaffold43986 GLEAN mRNA 389716 391899 0.985724 - . ID=CGI_10015036; scaffold43986 WUBlastX LTR_Pao 389716 391899 1449 - . . scaffold43986 GLEAN mRNA 391892 392536 0.985724 - . ID=CGI_10015036; scaffold43986 WUBlastX LTR_Pao 391892 392536 388 - . . scaffold43986 GLEAN mRNA 391883 392725 0.985724 - . ID=CGI_10015036; scaffold43986 WUBlastX LTR_Pao 391883 392725 61 - . . scaffold453 GLEAN mRNA 17922 17983 0.315868 + . ID=CGI_10015038; scaffold453 TRF Tandem_Repeat 17922 17983 60 + . . scaffold453 GLEAN mRNA 17923 17993 0.315868 + . ID=CGI_10015038; scaffold453 TRF Tandem_Repeat 17923 17993 73 + . . scaffold453 GLEAN mRNA 17923 17987 0.315868 + . ID=CGI_10015038; scaffold453 TRF Tandem_Repeat 17923 17987 80 + . . scaffold453 GLEAN mRNA 145520 145572 0.160604 + . ID=CGI_10015041; scaffold453 TRF Tandem_Repeat 145520 145572 106 + . . scaffold453 GLEAN mRNA 142785 142883 0.160604 + . ID=CGI_10015041; scaffold453 WUBlastX LTR_Gypsy 142785 142883 34 + . . scaffold453 GLEAN mRNA 142800 142886 0.160604 + . ID=CGI_10015041; scaffold453 WUBlastX LTR_Gypsy 142800 142886 41 + . . scaffold453 GLEAN mRNA 142758 142886 0.160604 + . ID=CGI_10015041; scaffold453 WUBlastX LTR_Gypsy 142758 142886 25 + . . scaffold453 GLEAN mRNA 142426 142716 0.160604 + . ID=CGI_10015041; scaffold453 WUBlastX LTR_Gypsy 142426 142716 94 + . . scaffold453 GLEAN mRNA 151158 151189 0.160604 + . ID=CGI_10015041; scaffold453 TRF Tandem_Repeat 151158 151189 64 + . . scaffold453 GLEAN mRNA 152616 152680 0.160604 + . ID=CGI_10015041; scaffold453 TRF Tandem_Repeat 152616 152680 103 + . . scaffold453 GLEAN mRNA 155645 155689 0.160604 + . ID=CGI_10015041; scaffold453 TRF Tandem_Repeat 155645 155689 90 + . . scaffold453 GLEAN mRNA 304792 304971 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LTR_Gypsy 304792 304971 39 + . . scaffold453 GLEAN mRNA 306518 306619 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LTR_Gypsy 306518 306619 21 + . . scaffold453 GLEAN mRNA 306704 306784 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LTR_Gypsy 306704 306784 21 + . . scaffold453 GLEAN mRNA 301458 301637 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX DNA_Kolobok 301458 301637 35 + . . scaffold453 GLEAN mRNA 302372 302482 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX DNA_Kolobok 302372 302482 59 + . . scaffold453 GLEAN mRNA 302351 302491 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX DNA_Kolobok 302351 302491 44 + . . scaffold453 GLEAN mRNA 305139 306395 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LTR_Gypsy 305139 306395 1134 + . . scaffold453 GLEAN mRNA 305022 305639 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LTR_Gypsy 305022 305639 87 + . . scaffold453 GLEAN mRNA 305886 306542 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LTR_Gypsy 305886 306542 171 + . . scaffold453 GLEAN mRNA 310814 310972 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX DNA_Harbinger 310814 310972 94 - . . scaffold453 GLEAN mRNA 310250 310681 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX DNA_Harbinger 310250 310681 180 - . . scaffold453 GLEAN mRNA 310838 310996 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX DNA_Harbinger 310838 310996 49 - . . scaffold453 GLEAN mRNA 304146 304346 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LTR_Gypsy 304146 304346 190 + . . scaffold453 GLEAN mRNA 302801 303007 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX DNA_Kolobok 302801 303007 30 - . . scaffold453 GLEAN mRNA 304342 304941 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LTR_Gypsy 304342 304941 286 + . . scaffold453 GLEAN mRNA 302798 302929 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX DNA_Kolobok 302798 302929 79 - . . scaffold453 GLEAN mRNA 303045 303176 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX DNA_Kolobok 303045 303176 78 - . . scaffold453 GLEAN mRNA 311298 311347 0.0783565 + . ID=CGI_10015048; scaffold453 TRF Tandem_Repeat 311298 311347 100 + . . scaffold453 GLEAN mRNA 314406 314495 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LINE_CR1-L2 314406 314495 25 - . . scaffold453 GLEAN mRNA 315121 315180 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LINE_CR1-L2 315121 315180 51 - . . scaffold453 GLEAN mRNA 315130 315255 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LINE_CR1-L2 315130 315255 45 - . . scaffold453 GLEAN mRNA 314738 315115 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LINE_CR1-L2 314738 315115 70 - . . scaffold453 GLEAN mRNA 314406 314564 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LINE_L2 314406 314564 24 - . . scaffold453 GLEAN mRNA 314666 315157 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX LINE_L2 314666 315157 55 - . . scaffold453 GLEAN mRNA 358128 358226 0.116749 + . ID=CGI_10015050; scaffold453 WUBlastX DNA_PiggyBac 358128 358226 35 + . . scaffold453 GLEAN mRNA 357528 357620 0.116749 + . ID=CGI_10015050; scaffold453 WUBlastX DNA_PiggyBac 357528 357620 37 + . . scaffold453 GLEAN mRNA 358086 358226 0.116749 + . ID=CGI_10015050; scaffold453 WUBlastX DNA_PiggyBac 358086 358226 31 + . . scaffold453 GLEAN mRNA 417577 417997 1 - . ID=CGI_10015051; scaffold453 TRF Tandem_Repeat 417577 417997 788 + . . scaffold71 GLEAN mRNA 99505 99583 0.681585 + . ID=CGI_10015053; scaffold71 TRF Tandem_Repeat 99505 99583 158 + . . scaffold71 GLEAN mRNA 111763 112127 0.681585 + . ID=CGI_10015053; scaffold71 TRF Tandem_Repeat 111763 112127 395 + . . scaffold71 GLEAN mRNA 128385 128761 0.9913 + . ID=CGI_10015056; scaffold71 TRF Tandem_Repeat 128385 128761 533 + . . scaffold71 GLEAN mRNA 140037 141128 0.9913 + . ID=CGI_10015056; scaffold71 TRF Tandem_Repeat 140037 141128 1094 + . . scaffold71 GLEAN mRNA 142765 142798 0.9913 + . ID=CGI_10015056; scaffold71 TRF Tandem_Repeat 142765 142798 68 + . . scaffold71 GLEAN mRNA 150389 150563 0.9913 + . ID=CGI_10015056; scaffold71 TRF Tandem_Repeat 150389 150563 181 + . . scaffold71 GLEAN mRNA 150378 151064 0.9913 + . ID=CGI_10015056; scaffold71 TRF Tandem_Repeat 150378 151064 372 + . . scaffold71 GLEAN mRNA 150414 150717 0.9913 + . ID=CGI_10015056; scaffold71 TRF Tandem_Repeat 150414 150717 249 + . . scaffold71 GLEAN mRNA 150796 150985 0.9913 + . ID=CGI_10015056; scaffold71 TRF Tandem_Repeat 150796 150985 164 + . . scaffold71 GLEAN mRNA 270763 272100 0.588785 + . ID=CGI_10015059; scaffold71 WUBlastX LTR_Ngaro 270763 272100 765 + . . scaffold71 GLEAN mRNA 272087 272968 0.588785 + . ID=CGI_10015059; scaffold71 WUBlastX LTR_Ngaro 272087 272968 243 + . . scaffold71 GLEAN mRNA 270517 272028 0.588785 + . ID=CGI_10015059; scaffold71 WUBlastX LTR_Ngaro 270517 272028 431 + . . scaffold71 GLEAN mRNA 272141 272872 0.588785 + . ID=CGI_10015059; scaffold71 WUBlastX LTR_Ngaro 272141 272872 269 + . . scaffold71 GLEAN mRNA 269831 269959 0.588785 + . ID=CGI_10015059; scaffold71 WUBlastX LTR_Gypsy 269831 269959 24 + . . scaffold71 GLEAN mRNA 311969 312011 0.99957 + . ID=CGI_10015060; scaffold71 TRF Tandem_Repeat 311969 312011 68 + . . scaffold71 GLEAN mRNA 325832 326806 0.210556 - . ID=CGI_10015061; scaffold71 TRF Tandem_Repeat 325832 326806 1797 + . . scaffold71 GLEAN mRNA 330182 330417 0.210556 - . ID=CGI_10015061; scaffold71 TRF Tandem_Repeat 330182 330417 382 + . . scaffold71 GLEAN mRNA 333056 333098 0.210556 - . ID=CGI_10015061; scaffold71 TRF Tandem_Repeat 333056 333098 86 + . . scaffold71 GLEAN mRNA 353122 353277 0.999172 + . ID=CGI_10015062; scaffold71 TRF Tandem_Repeat 353122 353277 204 + . . scaffold71 GLEAN mRNA 358389 358515 0.999172 + . ID=CGI_10015062; scaffold71 TRF Tandem_Repeat 358389 358515 227 + . . scaffold71 GLEAN mRNA 364462 364506 0.99805 - . ID=CGI_10015063; scaffold71 TRF Tandem_Repeat 364462 364506 90 + . . scaffold71 GLEAN mRNA 366311 366365 0.99805 - . ID=CGI_10015063; scaffold71 TRF Tandem_Repeat 366311 366365 110 + . . scaffold71 GLEAN mRNA 364462 364506 1 + . ID=CGI_10015064; scaffold71 TRF Tandem_Repeat 364462 364506 90 + . . scaffold71 GLEAN mRNA 366311 366365 1 + . ID=CGI_10015064; scaffold71 TRF Tandem_Repeat 366311 366365 110 + . . scaffold71 GLEAN mRNA 378325 378382 0.969076 - . ID=CGI_10015066; scaffold71 TRF Tandem_Repeat 378325 378382 116 + . . scaffold71 GLEAN mRNA 383010 383061 0.969076 - . ID=CGI_10015066; scaffold71 TRF Tandem_Repeat 383010 383061 104 + . . scaffold71 GLEAN mRNA 378325 378382 1 + . ID=CGI_10015067; scaffold71 TRF Tandem_Repeat 378325 378382 116 + . . scaffold1584 GLEAN mRNA 14406 14445 1 + . ID=CGI_10015069; scaffold1584 TRF Tandem_Repeat 14406 14445 80 + . . scaffold1584 GLEAN mRNA 19215 19503 0.463442 - . ID=CGI_10015070; scaffold1584 TRF Tandem_Repeat 19215 19503 181 + . . scaffold1584 GLEAN mRNA 19215 19500 0.463442 - . ID=CGI_10015070; scaffold1584 TRF Tandem_Repeat 19215 19500 193 + . . scaffold1584 GLEAN mRNA 22813 23019 0.463442 - . ID=CGI_10015070; scaffold1584 TRF Tandem_Repeat 22813 23019 193 + . . scaffold1584 GLEAN mRNA 22813 23021 0.463442 - . ID=CGI_10015070; scaffold1584 TRF Tandem_Repeat 22813 23021 212 + . . scaffold1584 GLEAN mRNA 31432 31616 0.463442 - . ID=CGI_10015070; scaffold1584 TRF Tandem_Repeat 31432 31616 165 + . . scaffold1584 GLEAN mRNA 31422 31725 0.463442 - . ID=CGI_10015070; scaffold1584 TRF Tandem_Repeat 31422 31725 252 + . . scaffold1584 GLEAN mRNA 20863 20919 0.463442 - . ID=CGI_10015070; scaffold1584 WUBlastX LINE_L1-Tx1 20863 20919 31 + . . scaffold1584 GLEAN mRNA 20967 21182 0.463442 - . ID=CGI_10015070; scaffold1584 WUBlastX LINE_L1 20967 21182 56 + . . scaffold1584 GLEAN mRNA 77898 77938 0.999351 - . ID=CGI_10015073; scaffold1584 TRF Tandem_Repeat 77898 77938 82 + . . scaffold1584 GLEAN mRNA 94568 94623 0.999351 - . ID=CGI_10015073; scaffold1584 TRF Tandem_Repeat 94568 94623 112 + . . scaffold1584 GLEAN mRNA 92034 92390 0.999351 - . ID=CGI_10015073; scaffold1584 WUBlastX LINE_RTE-X 92034 92390 133 + . . scaffold1584 GLEAN mRNA 91995 92426 0.999351 - . ID=CGI_10015073; scaffold1584 WUBlastX LINE_RTE-X 91995 92426 94 + . . scaffold1584 GLEAN mRNA 108317 108357 1 - . ID=CGI_10015075; scaffold1584 TRF Tandem_Repeat 108317 108357 82 + . . scaffold1584 GLEAN mRNA 140455 140715 0.837406 - . ID=CGI_10015081; scaffold1584 TRF Tandem_Repeat 140455 140715 186 + . . scaffold1584 GLEAN mRNA 140689 140943 0.837406 - . ID=CGI_10015081; scaffold1584 TRF Tandem_Repeat 140689 140943 395 + . . scaffold1584 GLEAN mRNA 142213 142348 0.837406 - . ID=CGI_10015081; scaffold1584 TRF Tandem_Repeat 142213 142348 115 + . . scaffold1584 GLEAN mRNA 151494 152183 0.837406 - . ID=CGI_10015081; scaffold1584 TRF Tandem_Repeat 151494 152183 409 + . . scaffold1584 GLEAN mRNA 151498 152181 0.837406 - . ID=CGI_10015081; scaffold1584 TRF Tandem_Repeat 151498 152181 450 + . . scaffold1584 GLEAN mRNA 152068 152270 0.837406 - . ID=CGI_10015081; scaffold1584 TRF Tandem_Repeat 152068 152270 90 + . . scaffold1584 GLEAN mRNA 161355 161406 0.837406 - . ID=CGI_10015081; scaffold1584 TRF Tandem_Repeat 161355 161406 86 + . . scaffold1584 GLEAN mRNA 162381 162428 0.837406 - . ID=CGI_10015081; scaffold1584 TRF Tandem_Repeat 162381 162428 96 + . . scaffold1584 GLEAN mRNA 343016 343291 0.69447 - . ID=CGI_10015089; scaffold1584 WUBlastX RC_Helitron 343016 343291 79 - . . scaffold1584 GLEAN mRNA 342965 343297 0.69447 - . ID=CGI_10015089; scaffold1584 WUBlastX RC_Helitron 342965 343297 74 - . . scaffold1584 GLEAN mRNA 342956 343354 0.69447 - . ID=CGI_10015089; scaffold1584 WUBlastX RC_Helitron 342956 343354 60 - . . scaffold40 GLEAN mRNA 31868 31933 0.42997 - . ID=CGI_10015097; scaffold40 TRF Tandem_Repeat 31868 31933 132 + . . scaffold40 GLEAN mRNA 34162 34571 0.42997 - . ID=CGI_10015097; scaffold40 TRF Tandem_Repeat 34162 34571 473 + . . scaffold40 GLEAN mRNA 36533 36942 0.42997 - . ID=CGI_10015097; scaffold40 TRF Tandem_Repeat 36533 36942 473 + . . scaffold40 GLEAN mRNA 38266 38304 0.42997 - . ID=CGI_10015097; scaffold40 TRF Tandem_Repeat 38266 38304 60 + . . scaffold40 GLEAN mRNA 42439 42559 0.42997 - . ID=CGI_10015097; scaffold40 TRF Tandem_Repeat 42439 42559 174 + . . scaffold40 GLEAN mRNA 130141 130180 0.999603 - . ID=CGI_10015102; scaffold40 TRF Tandem_Repeat 130141 130180 80 + . . scaffold40 GLEAN mRNA 132713 132754 0.999603 - . ID=CGI_10015102; scaffold40 TRF Tandem_Repeat 132713 132754 84 + . . scaffold40 GLEAN mRNA 145195 145268 1 - . ID=CGI_10015103; scaffold40 TRF Tandem_Repeat 145195 145268 71 + . . scaffold40 GLEAN mRNA 172314 172341 0.55286 + . ID=CGI_10015105; scaffold40 TRF Tandem_Repeat 172314 172341 56 + . . scaffold40 GLEAN mRNA 255655 257373 0.323172 - . ID=CGI_10015106; scaffold40 WUBlastX DNA_Academ 255655 257373 533 - . . scaffold40 GLEAN mRNA 255366 255647 0.323172 - . ID=CGI_10015106; scaffold40 WUBlastX DNA_Academ 255366 255647 95 - . . scaffold40 GLEAN mRNA 257378 257460 0.323172 - . ID=CGI_10015106; scaffold40 WUBlastX DNA_Academ 257378 258352 348 - . . scaffold40 GLEAN mRNA 379115 379171 0.998966 + . ID=CGI_10015108; scaffold40 TRF Tandem_Repeat 379115 379171 114 + . . scaffold40 GLEAN mRNA 390569 390611 0.998966 + . ID=CGI_10015108; scaffold40 TRF Tandem_Repeat 390569 390611 86 + . . scaffold578 GLEAN mRNA 20492 20526 0.244564 - . ID=CGI_10015109; scaffold578 TRF Tandem_Repeat 20492 20526 52 + . . scaffold578 GLEAN mRNA 23698 23937 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 23698 23937 73 - . . scaffold578 GLEAN mRNA 21942 22109 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 21942 22109 42 + . . scaffold578 GLEAN mRNA 22242 22397 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 22242 22397 48 + . . scaffold578 GLEAN mRNA 23013 23216 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 23013 23216 90 - . . scaffold578 GLEAN mRNA 23359 23532 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 23359 23532 88 - . . scaffold578 GLEAN mRNA 24000 24188 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 24000 24188 78 - . . scaffold578 GLEAN mRNA 24329 24862 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 24329 24862 210 - . . scaffold578 GLEAN mRNA 23722 23895 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 23722 23895 84 - . . scaffold578 GLEAN mRNA 23961 24203 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_Kolobok 23961 24203 51 - . . scaffold578 GLEAN mRNA 26294 26563 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_P 26294 26563 95 - . . scaffold578 GLEAN mRNA 26237 26533 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX DNA_P 26237 26533 60 - . . scaffold578 GLEAN mRNA 94407 94446 0.9993 + . ID=CGI_10015112; scaffold578 TRF Tandem_Repeat 94407 94446 59 + . . scaffold578 GLEAN mRNA 103337 103361 0.9993 + . ID=CGI_10015112; scaffold578 TRF Tandem_Repeat 103337 103361 50 + . . scaffold578 GLEAN mRNA 109173 109234 0.9993 + . ID=CGI_10015112; scaffold578 TRF Tandem_Repeat 109173 109234 115 + . . scaffold578 GLEAN mRNA 154967 155029 0.893218 - . ID=CGI_10015115; scaffold578 TRF Tandem_Repeat 154967 155029 126 + . . scaffold578 GLEAN mRNA 164664 164761 0.893218 - . ID=CGI_10015115; scaffold578 TRF Tandem_Repeat 164664 164761 67 + . . scaffold578 GLEAN mRNA 164721 164764 0.893218 - . ID=CGI_10015115; scaffold578 TRF Tandem_Repeat 164721 164764 52 + . . scaffold578 GLEAN mRNA 164664 164761 0.698081 + . ID=CGI_10015116; scaffold578 TRF Tandem_Repeat 164664 164761 67 + . . scaffold578 GLEAN mRNA 164721 164764 0.698081 + . ID=CGI_10015116; scaffold578 TRF Tandem_Repeat 164721 164764 52 + . . scaffold578 GLEAN mRNA 168469 168499 0.698081 + . ID=CGI_10015116; scaffold578 TRF Tandem_Repeat 168469 168499 62 + . . scaffold578 GLEAN mRNA 235153 235729 0.684762 - . ID=CGI_10015122; scaffold578 TRF Tandem_Repeat 235153 235729 766 + . . scaffold578 GLEAN mRNA 278691 278875 0.806482 - . ID=CGI_10015124; scaffold578 TRF Tandem_Repeat 278691 278875 194 + . . scaffold578 GLEAN mRNA 292941 293107 0.806482 - . ID=CGI_10015124; scaffold578 TRF Tandem_Repeat 292941 293107 253 + . . scaffold578 GLEAN mRNA 309617 309659 1 - . ID=CGI_10015126; scaffold578 TRF Tandem_Repeat 309617 309659 86 + . . scaffold578 GLEAN mRNA 309617 309659 0.999113 + . ID=CGI_10015127; scaffold578 TRF Tandem_Repeat 309617 309659 86 + . . scaffold578 GLEAN mRNA 340163 340585 0.999218 - . ID=CGI_10015129; scaffold578 WUBlastX DNA_TcMar-Tc1 340163 340585 111 + . . scaffold578 GLEAN mRNA 340464 341045 0.999218 - . ID=CGI_10015129; scaffold578 WUBlastX DNA_TcMar-Tc1 340464 341045 248 + . . scaffold578 GLEAN mRNA 340584 341171 0.999218 - . ID=CGI_10015129; scaffold578 WUBlastX DNA_TcMar-Tc1 340584 341171 264 + . . scaffold578 GLEAN mRNA 357358 357411 0.458006 + . ID=CGI_10015130; scaffold578 TRF Tandem_Repeat 357358 357411 90 + . . scaffold578 GLEAN mRNA 356363 356590 0.458006 + . ID=CGI_10015130; scaffold578 WUBlastX LINE_RTE-X 356363 356590 25 + . . scaffold578 GLEAN mRNA 349831 350235 0.458006 + . ID=CGI_10015130; scaffold578 WUBlastX LINE_RTE-X 349831 350235 134 + . . scaffold578 GLEAN mRNA 357035 357307 0.458006 + . ID=CGI_10015130; scaffold578 WUBlastX LINE_RTE-X 357035 357307 146 + . . scaffold578 GLEAN mRNA 358034 358834 0.458006 + . ID=CGI_10015130; scaffold578 WUBlastX LTR_DIRS 358034 358834 296 - . . scaffold578 GLEAN mRNA 357002 357340 0.458006 + . ID=CGI_10015130; scaffold578 WUBlastX LINE_RTE-X 357002 357340 130 + . . scaffold578 GLEAN mRNA 355807 356352 0.458006 + . ID=CGI_10015130; scaffold578 WUBlastX LINE_RTE-X 355807 356352 24 + . . scaffold578 GLEAN mRNA 357827 358039 0.458006 + . ID=CGI_10015130; scaffold578 WUBlastX LINE_RTE-X 357827 358039 90 + . . scaffold578 GLEAN mRNA 356348 356506 0.458006 + . ID=CGI_10015130; scaffold578 WUBlastX LINE_RTE-X 356348 356506 49 + . . scaffold578 GLEAN mRNA 355857 355988 0.458006 + . ID=CGI_10015130; scaffold578 WUBlastX LINE_RTE-X 355857 355988 54 + . . scaffold578 GLEAN mRNA 369873 369898 0.999994 - . ID=CGI_10015132; scaffold578 TRF Tandem_Repeat 369873 369898 52 + . . scaffold1671 GLEAN mRNA 52884 52945 0.998077 + . ID=CGI_10015136; scaffold1671 TRF Tandem_Repeat 52884 52945 115 + . . scaffold1671 GLEAN mRNA 50590 50838 0.998077 + . ID=CGI_10015136; scaffold1671 WUBlastX LINE_CR1 50590 50838 85 - . . scaffold1671 GLEAN mRNA 146136 146852 0.998892 - . ID=CGI_10015138; scaffold1671 TRF Tandem_Repeat 146136 146852 769 + . . scaffold1671 GLEAN mRNA 149490 149560 0.998892 - . ID=CGI_10015138; scaffold1671 TRF Tandem_Repeat 149490 149560 142 + . . scaffold1671 GLEAN mRNA 149833 149943 0.998892 - . ID=CGI_10015138; scaffold1671 TRF Tandem_Repeat 149833 149943 102 + . . scaffold1671 GLEAN mRNA 149833 149943 0.998892 - . ID=CGI_10015138; scaffold1671 TRF Tandem_Repeat 149833 149943 129 + . . scaffold1671 GLEAN mRNA 179979 180027 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 179979 180027 98 + . . scaffold1671 GLEAN mRNA 184226 184259 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 184226 184259 59 + . . scaffold1671 GLEAN mRNA 184851 184931 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 184851 184931 101 + . . scaffold1671 GLEAN mRNA 185395 185673 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 185395 185673 263 + . . scaffold1671 GLEAN mRNA 185395 185689 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 185395 185689 283 + . . scaffold1671 GLEAN mRNA 185395 185672 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 185395 185672 272 + . . scaffold1671 GLEAN mRNA 186341 186378 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 186341 186378 51 + . . scaffold1671 GLEAN mRNA 189134 189869 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 189134 189869 1062 + . . scaffold1671 GLEAN mRNA 191124 191411 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 191124 191411 418 + . . scaffold1671 GLEAN mRNA 193614 193791 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 193614 193791 148 + . . scaffold1671 GLEAN mRNA 193614 194022 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 193614 194022 336 + . . scaffold1671 GLEAN mRNA 193621 194020 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 193621 194020 193 + . . scaffold1671 GLEAN mRNA 196255 196542 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 196255 196542 441 + . . scaffold1671 GLEAN mRNA 198274 198742 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 198274 198742 250 + . . scaffold1671 GLEAN mRNA 198274 198733 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 198274 198733 361 + . . scaffold1671 GLEAN mRNA 198279 198735 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 198279 198735 328 + . . scaffold1671 GLEAN mRNA 204391 204424 0.999995 - . ID=CGI_10015144; scaffold1671 TRF Tandem_Repeat 204391 204424 61 + . . scaffold1671 GLEAN mRNA 205482 205517 0.999995 - . ID=CGI_10015144; scaffold1671 TRF Tandem_Repeat 205482 205517 72 + . . scaffold1671 GLEAN mRNA 222168 222251 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 222168 222251 22 + . . scaffold1671 GLEAN mRNA 222783 222857 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 222783 222857 36 + . . scaffold1671 GLEAN mRNA 227283 227456 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 227283 227456 98 + . . scaffold1671 GLEAN mRNA 227283 227429 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 227283 227429 108 + . . scaffold1671 GLEAN mRNA 226874 227017 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 226874 227017 42 + . . scaffold1671 GLEAN mRNA 221760 221864 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 221760 221864 21 + . . scaffold1671 GLEAN mRNA 221739 221831 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 221739 221831 32 + . . scaffold1671 GLEAN mRNA 222795 222857 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 222795 222857 37 + . . scaffold1671 GLEAN mRNA 226405 226494 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 226405 226494 36 + . . scaffold1671 GLEAN mRNA 226429 226560 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 226429 226560 28 + . . scaffold1671 GLEAN mRNA 221442 221831 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 221442 221831 29 + . . scaffold1671 GLEAN mRNA 222780 222869 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 222780 222869 26 + . . scaffold1671 GLEAN mRNA 299671 299715 0.09114 + . ID=CGI_10015153; scaffold1671 TRF Tandem_Repeat 299671 299715 90 + . . scaffold1671 GLEAN mRNA 301651 301734 0.09114 + . ID=CGI_10015153; scaffold1671 TRF Tandem_Repeat 301651 301734 57 + . . scaffold1671 GLEAN mRNA 308615 308817 0.243132 + . ID=CGI_10015154; scaffold1671 TRF Tandem_Repeat 308615 308817 174 + . . scaffold1671 GLEAN mRNA 308929 309015 0.243132 + . ID=CGI_10015154; scaffold1671 TRF Tandem_Repeat 308929 309015 104 + . . scaffold1671 GLEAN mRNA 310559 311035 0.243132 + . ID=CGI_10015154; scaffold1671 WUBlastX LINE_RTE-BovB 310559 311035 93 - . . scaffold1671 GLEAN mRNA 310661 311083 0.243132 + . ID=CGI_10015154; scaffold1671 WUBlastX LINE_RTE-BovB 310661 311083 170 - . . scaffold1671 GLEAN mRNA 311070 311549 0.243132 + . ID=CGI_10015154; scaffold1671 WUBlastX LINE_RTE-BovB 311070 311555 45 - . . scaffold1671 GLEAN mRNA 311154 311468 0.243132 + . ID=CGI_10015154; scaffold1671 WUBlastX LINE_RTE-BovB 311154 311468 97 - . . scaffold1671 GLEAN mRNA 311049 311414 0.243132 + . ID=CGI_10015154; scaffold1671 WUBlastX LINE_RTE-BovB 311049 311414 240 - . . scaffold1671 GLEAN mRNA 329723 329837 0.991247 + . ID=CGI_10015155; scaffold1671 TRF Tandem_Repeat 329723 329837 176 + . . scaffold1671 GLEAN mRNA 330302 330467 0.991247 + . ID=CGI_10015155; scaffold1671 TRF Tandem_Repeat 330302 330467 255 + . . scaffold1671 GLEAN mRNA 331012 331315 0.991247 + . ID=CGI_10015155; scaffold1671 TRF Tandem_Repeat 331012 331315 263 + . . scaffold1671 GLEAN mRNA 335264 336288 0.991247 + . ID=CGI_10015155; scaffold1671 TRF Tandem_Repeat 335264 336288 1638 + . . scaffold1671 GLEAN mRNA 347913 347975 0.693652 + . ID=CGI_10015156; scaffold1671 TRF Tandem_Repeat 347913 347975 117 + . . scaffold1671 GLEAN mRNA 348986 349025 0.693652 + . ID=CGI_10015156; scaffold1671 TRF Tandem_Repeat 348986 349025 80 + . . scaffold1671 GLEAN mRNA 354356 356033 0.693652 + . ID=CGI_10015156; scaffold1671 TRF Tandem_Repeat 354356 356033 1832 + . . scaffold1671 GLEAN mRNA 354456 356033 0.693652 + . ID=CGI_10015156; scaffold1671 TRF Tandem_Repeat 354456 356033 1804 + . . scaffold1671 GLEAN mRNA 354356 356033 0.693652 + . ID=CGI_10015156; scaffold1671 TRF Tandem_Repeat 354356 356033 1802 + . . scaffold1671 GLEAN mRNA 358706 358766 0.693652 + . ID=CGI_10015156; scaffold1671 TRF Tandem_Repeat 358706 358766 72 + . . scaffold1671 GLEAN mRNA 387394 387810 0.999617 - . ID=CGI_10015157; scaffold1671 WUBlastX DNA_Sola 387394 387996 30 - . . scaffold1671 GLEAN mRNA 384091 384177 0.999617 - . ID=CGI_10015157; scaffold1671 WUBlastX DNA_Sola 384091 384177 22 - . . scaffold1671 GLEAN mRNA 384603 384824 0.999617 - . ID=CGI_10015157; scaffold1671 WUBlastX DNA_Sola 384603 384824 60 - . . scaffold1671 GLEAN mRNA 409479 409539 1 - . ID=CGI_10015158; scaffold1671 TRF Tandem_Repeat 409479 409539 122 + . . scaffold1671 GLEAN mRNA 420404 420452 0.51142 + . ID=CGI_10015159; scaffold1671 TRF Tandem_Repeat 420404 420452 73 + . . scaffold1671 GLEAN mRNA 412934 413638 0.51142 + . ID=CGI_10015159; scaffold1671 WUBlastX LINE_RTE-BovB 412934 413638 403 + . . scaffold1671 GLEAN mRNA 413640 413975 0.51142 + . ID=CGI_10015159; scaffold1671 WUBlastX LINE_RTE-BovB 413640 413975 204 + . . scaffold1671 GLEAN mRNA 412934 413908 0.51142 + . ID=CGI_10015159; scaffold1671 WUBlastX LINE_RTE-BovB 412934 413908 225 + . . scaffold90 GLEAN mRNA 139988 140209 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX LTR_Gypsy 139988 140209 48 + . . scaffold90 GLEAN mRNA 137427 137882 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX DNA_Maverick 137427 137882 39 + . . scaffold90 GLEAN mRNA 136159 136779 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX DNA_Maverick 136159 136779 112 + . . scaffold90 GLEAN mRNA 137077 137178 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX DNA_Maverick 137077 137178 30 + . . scaffold90 GLEAN mRNA 137178 137648 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX DNA_Maverick 137178 137648 136 + . . scaffold90 GLEAN mRNA 137721 137876 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX DNA_Maverick 137721 137876 117 + . . scaffold90 GLEAN mRNA 137890 139008 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX LTR_Gypsy 137890 139008 128 + . . scaffold90 GLEAN mRNA 140069 140539 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX LTR_Gypsy 140069 140539 107 + . . scaffold90 GLEAN mRNA 135730 135776 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX LTR_Gypsy 135588 135776 20 + . . scaffold90 GLEAN mRNA 137890 138801 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX LTR_Gypsy 137890 138801 802 + . . scaffold90 GLEAN mRNA 140339 140539 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX LTR_Gypsy 140339 140539 107 + . . scaffold90 GLEAN mRNA 136636 136956 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX LTR_Gypsy 136636 136956 23 + . . scaffold90 GLEAN mRNA 136819 136902 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX LTR_Gypsy 136819 136902 23 + . . scaffold90 GLEAN mRNA 139625 139762 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX LTR_Copia 139625 139762 26 + . . scaffold90 GLEAN mRNA 202672 202672 0.999991 - . ID=CGI_10015167; scaffold90 WUBlastX LTR_Pao 202672 202950 51 - . . scaffold90 GLEAN mRNA 258151 258219 0.982419 + . ID=CGI_10015169; scaffold90 WUBlastX DNA_Harbinger 258151 258264 26 - . . scaffold90 GLEAN mRNA 258121 258219 0.982419 + . ID=CGI_10015169; scaffold90 WUBlastX DNA_Harbinger 258121 258264 24 - . . scaffold90 GLEAN mRNA 256713 256862 0.982419 + . ID=CGI_10015169; scaffold90 WUBlastX DNA_Harbinger 256713 256862 74 + . . scaffold90 GLEAN mRNA 275973 276009 0.629226 + . ID=CGI_10015170; scaffold90 TRF Tandem_Repeat 275973 276009 74 + . . scaffold90 GLEAN mRNA 269903 270115 0.629226 + . ID=CGI_10015170; scaffold90 WUBlastX DNA_Harbinger 269903 270115 35 - . . scaffold90 GLEAN mRNA 270241 270378 0.629226 + . ID=CGI_10015170; scaffold90 WUBlastX DNA_Harbinger 270241 270378 102 - . . scaffold90 GLEAN mRNA 270805 270996 0.629226 + . ID=CGI_10015170; scaffold90 WUBlastX DNA_Harbinger 270805 270996 129 - . . scaffold90 GLEAN mRNA 270999 271142 0.629226 + . ID=CGI_10015170; scaffold90 WUBlastX DNA_Harbinger 270999 271142 23 - . . scaffold90 GLEAN mRNA 270241 270405 0.629226 + . ID=CGI_10015170; scaffold90 WUBlastX DNA_Harbinger 270241 270405 39 - . . scaffold90 GLEAN mRNA 270808 271050 0.629226 + . ID=CGI_10015170; scaffold90 WUBlastX DNA_Harbinger 270808 271050 76 - . . scaffold90 GLEAN mRNA 278672 278968 0.629226 + . ID=CGI_10015170; scaffold90 WUBlastX LINE_RTE-X 278672 278968 31 - . . scaffold90 GLEAN mRNA 323433 323471 0.945886 + . ID=CGI_10015172; scaffold90 TRF Tandem_Repeat 323433 323471 78 + . . scaffold90 GLEAN mRNA 328785 328811 0.945886 + . ID=CGI_10015172; scaffold90 TRF Tandem_Repeat 328785 328811 54 + . . scaffold90 GLEAN mRNA 329451 329486 0.945886 + . ID=CGI_10015172; scaffold90 TRF Tandem_Repeat 329451 329486 72 + . . scaffold90 GLEAN mRNA 339214 339474 0.945886 + . ID=CGI_10015172; scaffold90 WUBlastX DNA_hAT-Ac 339214 339474 78 - . . scaffold90 GLEAN mRNA 339277 339654 0.945886 + . ID=CGI_10015172; scaffold90 WUBlastX DNA_hAT-Ac 339277 339654 219 - . . scaffold90 GLEAN mRNA 340086 340202 0.945886 + . ID=CGI_10015172; scaffold90 WUBlastX DNA_hAT-Ac 340086 340202 39 - . . scaffold90 GLEAN mRNA 340124 341569 0.945886 + . ID=CGI_10015172; scaffold90 WUBlastX DNA_hAT-Ac 340124 341569 715 - . . scaffold90 GLEAN mRNA 353642 353712 0.983028 + . ID=CGI_10015173; scaffold90 TRF Tandem_Repeat 353642 353712 142 + . . scaffold90 GLEAN mRNA 387951 388281 0.756327 - . ID=CGI_10015174; scaffold90 TRF Tandem_Repeat 387951 388281 398 + . . scaffold90 GLEAN mRNA 391847 392524 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-hATw 391847 392524 144 + . . scaffold90 GLEAN mRNA 384849 385052 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_TcMar-Marin 384849 385052 87 + . . scaffold90 GLEAN mRNA 389604 389783 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_Crypton 389604 389783 96 + . . scaffold90 GLEAN mRNA 389942 390325 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_Crypton 389942 390325 190 + . . scaffold90 GLEAN mRNA 389172 389720 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_Crypton 389172 389720 225 + . . scaffold90 GLEAN mRNA 384849 385406 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_TcMar-Marin 384849 385406 83 + . . scaffold90 GLEAN mRNA 391919 392689 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-hATw 391919 392689 65 + . . scaffold90 GLEAN mRNA 394570 394668 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX LTR_Copia 394570 394668 29 - . . scaffold90 GLEAN mRNA 395099 396442 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX LTR_Gypsy 395099 396442 180 - . . scaffold90 GLEAN mRNA 395444 396163 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX LTR_Gypsy 395444 396163 235 - . . scaffold90 GLEAN mRNA 399186 399938 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100 399186 399938 110 - . . scaffold90 GLEAN mRNA 396842 397009 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100 396842 397009 46 - . . scaffold90 GLEAN mRNA 394856 396052 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX LTR_Gypsy 394856 396052 834 - . . scaffold90 GLEAN mRNA 397964 398032 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100? 397964 398032 45 - . . scaffold90 GLEAN mRNA 399174 399788 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100? 399174 399788 224 - . . scaffold90 GLEAN mRNA 398040 398618 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100 398040 398618 42 - . . scaffold90 GLEAN mRNA 398724 398954 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100 398724 398954 128 - . . scaffold90 GLEAN mRNA 399186 399707 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100 399186 399707 258 - . . scaffold90 GLEAN mRNA 399715 400035 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Tip100 399715 400035 56 - . . scaffold1835 GLEAN mRNA 12075 12113 0.999221 + . ID=CGI_10015176; scaffold1835 TRF Tandem_Repeat 12075 12113 78 + . . scaffold1835 GLEAN mRNA 16825 17225 0.967023 - . ID=CGI_10015177; scaffold1835 TRF Tandem_Repeat 16825 17225 457 + . . scaffold1835 GLEAN mRNA 19617 19689 0.967023 - . ID=CGI_10015177; scaffold1835 TRF Tandem_Repeat 19617 19689 137 + . . scaffold1835 GLEAN mRNA 68929 68984 0.889602 - . ID=CGI_10015180; scaffold1835 TRF Tandem_Repeat 68929 68984 112 + . . scaffold1835 GLEAN mRNA 73146 73265 0.889602 - . ID=CGI_10015180; scaffold1835 TRF Tandem_Repeat 73146 73265 195 + . . scaffold1835 GLEAN mRNA 80445 80507 0.889602 - . ID=CGI_10015180; scaffold1835 TRF Tandem_Repeat 80445 80507 126 + . . scaffold1835 GLEAN mRNA 86550 86609 0.622693 + . ID=CGI_10015181; scaffold1835 TRF Tandem_Repeat 86550 86609 120 + . . scaffold1835 GLEAN mRNA 90544 90587 0.622693 + . ID=CGI_10015181; scaffold1835 TRF Tandem_Repeat 90544 90587 88 + . . scaffold1835 GLEAN mRNA 117201 117248 0.993575 + . ID=CGI_10015182; scaffold1835 TRF Tandem_Repeat 117201 117248 69 + . . scaffold1835 GLEAN mRNA 131878 132304 0.981821 + . ID=CGI_10015183; scaffold1835 TRF Tandem_Repeat 131878 132304 423 + . . scaffold1835 GLEAN mRNA 131878 132159 0.981821 + . ID=CGI_10015183; scaffold1835 TRF Tandem_Repeat 131878 132159 422 + . . scaffold1835 GLEAN mRNA 153811 154141 0.999676 - . ID=CGI_10015184; scaffold1835 TRF Tandem_Repeat 153811 154141 662 + . . scaffold1835 GLEAN mRNA 168015 168075 1 + . ID=CGI_10015185; scaffold1835 TRF Tandem_Repeat 168015 168075 113 + . . scaffold1835 GLEAN mRNA 169459 169503 1 + . ID=CGI_10015185; scaffold1835 TRF Tandem_Repeat 169459 169503 81 + . . scaffold1835 GLEAN mRNA 264961 265309 1 + . ID=CGI_10015188; scaffold1835 TRF Tandem_Repeat 264961 265309 332 + . . scaffold1835 GLEAN mRNA 264961 265309 1 + . ID=CGI_10015188; scaffold1835 TRF Tandem_Repeat 264961 265309 334 + . . scaffold1835 GLEAN mRNA 270478 270521 0.999676 - . ID=CGI_10015189; scaffold1835 TRF Tandem_Repeat 270478 270521 52 + . . scaffold1835 GLEAN mRNA 302949 302995 0.593391 - . ID=CGI_10015191; scaffold1835 TRF Tandem_Repeat 302949 302995 94 + . . scaffold1835 GLEAN mRNA 379070 379402 0.999671 - . ID=CGI_10015194; scaffold1835 WUBlastX DNA_hAT-Blackja 379070 379402 90 - . . scaffold1835 GLEAN mRNA 379363 379521 0.999671 - . ID=CGI_10015194; scaffold1835 WUBlastX DNA_hAT-Blackja 379363 379521 41 - . . scaffold1665 GLEAN mRNA 39865 39889 1 + . ID=CGI_10015197; scaffold1665 TRF Tandem_Repeat 39865 39889 50 + . . scaffold1665 GLEAN mRNA 76195 76247 0.991575 - . ID=CGI_10015198; scaffold1665 TRF Tandem_Repeat 76195 76247 106 + . . scaffold1665 GLEAN mRNA 99229 99713 0.999177 - . ID=CGI_10015199; scaffold1665 TRF Tandem_Repeat 99229 99713 252 + . . scaffold1665 GLEAN mRNA 101095 101139 0.999177 - . ID=CGI_10015199; scaffold1665 TRF Tandem_Repeat 101095 101139 90 + . . scaffold1665 GLEAN mRNA 134062 134331 0.651132 - . ID=CGI_10015200; scaffold1665 WUBlastX LINE_RTE-X 134062 134331 114 + . . scaffold1665 GLEAN mRNA 134131 134367 0.651132 - . ID=CGI_10015200; scaffold1665 WUBlastX LINE_RTE-X 134131 134367 69 + . . scaffold1665 GLEAN mRNA 189936 190107 0.648545 - . ID=CGI_10015205; scaffold1665 TRF Tandem_Repeat 189936 190107 192 + . . scaffold1665 GLEAN mRNA 189987 190311 0.648545 - . ID=CGI_10015205; scaffold1665 TRF Tandem_Repeat 189987 190311 272 + . . scaffold1665 GLEAN mRNA 222559 224274 0.994598 - . ID=CGI_10015206; scaffold1665 WUBlastX LTR_Gypsy 222559 224274 558 + . . scaffold1665 GLEAN mRNA 222388 222915 0.994598 - . ID=CGI_10015206; scaffold1665 WUBlastX LTR_Gypsy 222388 222915 183 + . . scaffold1665 GLEAN mRNA 316133 316191 0.43532 + . ID=CGI_10015211; scaffold1665 TRF Tandem_Repeat 316133 316191 118 + . . scaffold1665 GLEAN mRNA 317216 317259 0.43532 + . ID=CGI_10015211; scaffold1665 TRF Tandem_Repeat 317216 317259 88 + . . scaffold1665 GLEAN mRNA 339851 339908 0.43532 + . ID=CGI_10015211; scaffold1665 TRF Tandem_Repeat 339851 339908 116 + . . scaffold1665 GLEAN mRNA 340260 340285 0.43532 + . ID=CGI_10015211; scaffold1665 TRF Tandem_Repeat 340260 340285 52 + . . scaffold1665 GLEAN mRNA 341495 341563 0.43532 + . ID=CGI_10015211; scaffold1665 TRF Tandem_Repeat 341495 341563 95 + . . scaffold1665 GLEAN mRNA 345587 345642 0.43532 + . ID=CGI_10015211; scaffold1665 TRF Tandem_Repeat 345587 345642 112 + . . scaffold1665 GLEAN mRNA 415513 415872 0.990268 - . ID=CGI_10015218; scaffold1665 WUBlastX LINE_RTE-X 415513 415872 123 + . . scaffold1665 GLEAN mRNA 415411 415866 0.990268 - . ID=CGI_10015218; scaffold1665 WUBlastX LINE_CR1-L2 415411 415866 62 + . . scaffold1665 GLEAN mRNA 416347 416649 0.990268 - . ID=CGI_10015218; scaffold1665 WUBlastX LINE_RTE-X 416347 416649 145 + . . scaffold1665 GLEAN mRNA 415713 416366 0.990268 - . ID=CGI_10015218; scaffold1665 WUBlastX LINE_RTE-X 415713 416366 210 + . . scaffold1665 GLEAN mRNA 415348 415659 0.990268 - . ID=CGI_10015218; scaffold1665 WUBlastX LINE_I 415348 415659 32 + . . scaffold1665 GLEAN mRNA 416599 416772 0.990268 - . ID=CGI_10015218; scaffold1665 WUBlastX LINE_RTE-X 416599 416772 59 + . . scaffold193 GLEAN mRNA 21895 21941 0.648144 - . ID=CGI_10015221; scaffold193 TRF Tandem_Repeat 21895 21941 94 + . . scaffold193 GLEAN mRNA 23047 23101 0.648144 - . ID=CGI_10015221; scaffold193 TRF Tandem_Repeat 23047 23101 110 + . . scaffold193 GLEAN mRNA 60433 60470 0.99962 + . ID=CGI_10015222; scaffold193 TRF Tandem_Repeat 60433 60470 67 + . . scaffold193 GLEAN mRNA 64546 64582 0.99962 + . ID=CGI_10015222; scaffold193 TRF Tandem_Repeat 64546 64582 74 + . . scaffold193 GLEAN mRNA 79864 79902 0.99962 + . ID=CGI_10015222; scaffold193 TRF Tandem_Repeat 79864 79902 53 + . . scaffold193 GLEAN mRNA 84273 85319 0.99962 + . ID=CGI_10015222; scaffold193 TRF Tandem_Repeat 84273 85319 972 + . . scaffold193 GLEAN mRNA 85795 85821 0.99962 + . ID=CGI_10015222; scaffold193 TRF Tandem_Repeat 85795 85821 54 + . . scaffold193 GLEAN mRNA 87229 88133 0.99962 + . ID=CGI_10015222; scaffold193 TRF Tandem_Repeat 87229 88133 1130 + . . scaffold193 GLEAN mRNA 91778 92097 0.99962 + . ID=CGI_10015222; scaffold193 TRF Tandem_Repeat 91778 92097 209 + . . scaffold193 GLEAN mRNA 65278 65727 0.99962 + . ID=CGI_10015222; scaffold193 WUBlastX LINE_RTE-X 65278 65727 62 - . . scaffold193 GLEAN mRNA 65311 65646 0.99962 + . ID=CGI_10015222; scaffold193 WUBlastX LINE_RTE-X 65311 65646 82 - . . scaffold193 GLEAN mRNA 115821 116189 1 + . ID=CGI_10015225; scaffold193 TRF Tandem_Repeat 115821 116189 580 + . . scaffold193 GLEAN mRNA 141832 141913 0.99931 - . ID=CGI_10015226; scaffold193 TRF Tandem_Repeat 141832 141913 164 + . . scaffold193 GLEAN mRNA 190648 191396 0.757976 - . ID=CGI_10015228; scaffold193 TRF Tandem_Repeat 190648 191396 997 + . . scaffold193 GLEAN mRNA 192651 193085 0.757976 - . ID=CGI_10015228; scaffold193 TRF Tandem_Repeat 192651 193085 387 + . . scaffold193 GLEAN mRNA 194024 194065 0.757976 - . ID=CGI_10015228; scaffold193 TRF Tandem_Repeat 194024 194065 77 + . . scaffold193 GLEAN mRNA 195290 195375 0.757976 - . ID=CGI_10015228; scaffold193 TRF Tandem_Repeat 195290 195375 120 + . . scaffold193 GLEAN mRNA 197066 197161 0.757976 - . ID=CGI_10015228; scaffold193 TRF Tandem_Repeat 197066 197161 151 + . . scaffold193 GLEAN mRNA 197738 198652 0.757976 - . ID=CGI_10015228; scaffold193 TRF Tandem_Repeat 197738 198652 616 + . . scaffold193 GLEAN mRNA 197738 198640 0.757976 - . ID=CGI_10015228; scaffold193 TRF Tandem_Repeat 197738 198640 1026 + . . scaffold193 GLEAN mRNA 197738 198597 0.757976 - . ID=CGI_10015228; scaffold193 TRF Tandem_Repeat 197738 198597 1032 + . . scaffold193 GLEAN mRNA 210609 210666 1 - . ID=CGI_10015229; scaffold193 TRF Tandem_Repeat 210609 210666 98 + . . scaffold193 GLEAN mRNA 228032 228142 0.959713 + . ID=CGI_10015231; scaffold193 WUBlastX LINE_L1-Tx1 228032 228142 38 + . . scaffold193 GLEAN mRNA 228148 228513 0.959713 + . ID=CGI_10015231; scaffold193 WUBlastX LINE_L1-Tx1 228148 228513 89 + . . scaffold193 GLEAN mRNA 255941 256208 0.906792 - . ID=CGI_10015232; scaffold193 TRF Tandem_Repeat 255941 256208 446 + . . scaffold193 GLEAN mRNA 256720 256946 0.906792 - . ID=CGI_10015232; scaffold193 TRF Tandem_Repeat 256720 256946 267 + . . scaffold193 GLEAN mRNA 256720 257225 0.906792 - . ID=CGI_10015232; scaffold193 TRF Tandem_Repeat 256720 257225 638 + . . scaffold193 GLEAN mRNA 256720 257225 0.906792 - . ID=CGI_10015232; scaffold193 TRF Tandem_Repeat 256720 257225 638 + . . scaffold193 GLEAN mRNA 256945 257225 0.906792 - . ID=CGI_10015232; scaffold193 TRF Tandem_Repeat 256945 257225 445 + . . scaffold193 GLEAN mRNA 248779 248913 0.906792 - . ID=CGI_10015232; scaffold193 WUBlastX LTR_Gypsy-Cigr 248779 248913 106 - . . scaffold193 GLEAN mRNA 248508 248777 0.906792 - . ID=CGI_10015232; scaffold193 WUBlastX LTR_Gypsy-Cigr 248508 248777 75 - . . scaffold193 GLEAN mRNA 264633 264674 0.906792 - . ID=CGI_10015232; scaffold193 TRF Tandem_Repeat 264633 264674 84 + . . scaffold193 GLEAN mRNA 326690 326886 1 + . ID=CGI_10015236; scaffold193 TRF Tandem_Repeat 326690 326886 295 + . . scaffold193 GLEAN mRNA 335699 335769 1 + . ID=CGI_10015238; scaffold193 TRF Tandem_Repeat 335699 335769 142 + . . scaffold193 GLEAN mRNA 348735 348786 0.382301 + . ID=CGI_10015239; scaffold193 TRF Tandem_Repeat 348735 348786 65 + . . scaffold193 GLEAN mRNA 349145 349185 0.382301 + . ID=CGI_10015239; scaffold193 TRF Tandem_Repeat 349145 349185 82 + . . scaffold193 GLEAN mRNA 352500 353164 0.382301 + . ID=CGI_10015239; scaffold193 TRF Tandem_Repeat 352500 353164 1136 + . . scaffold193 GLEAN mRNA 355560 355995 0.382301 + . ID=CGI_10015239; scaffold193 TRF Tandem_Repeat 355560 355995 452 + . . scaffold193 GLEAN mRNA 355760 355995 0.382301 + . ID=CGI_10015239; scaffold193 TRF Tandem_Repeat 355760 355995 402 + . . scaffold193 GLEAN mRNA 357116 357385 0.382301 + . ID=CGI_10015239; scaffold193 TRF Tandem_Repeat 357116 357385 416 + . . scaffold193 GLEAN mRNA 357515 357740 0.382301 + . ID=CGI_10015239; scaffold193 TRF Tandem_Repeat 357515 357740 394 + . . scaffold193 GLEAN mRNA 366481 366786 0.382301 + . ID=CGI_10015239; scaffold193 TRF Tandem_Repeat 366481 366786 241 + . . scaffold193 GLEAN mRNA 369156 369332 0.382301 + . ID=CGI_10015239; scaffold193 TRF Tandem_Repeat 369156 369332 313 + . . scaffold193 GLEAN mRNA 370958 371169 0.474303 - . ID=CGI_10015240; scaffold193 TRF Tandem_Repeat 370958 371169 246 + . . scaffold193 GLEAN mRNA 387802 387861 0.47581 + . ID=CGI_10015241; scaffold193 TRF Tandem_Repeat 387802 387861 66 + . . scaffold193 GLEAN mRNA 387807 387869 0.47581 + . ID=CGI_10015241; scaffold193 TRF Tandem_Repeat 387807 387869 108 + . . scaffold193 GLEAN mRNA 387802 387872 0.47581 + . ID=CGI_10015241; scaffold193 TRF Tandem_Repeat 387802 387872 70 + . . scaffold193 GLEAN mRNA 387811 387872 0.47581 + . ID=CGI_10015241; scaffold193 TRF Tandem_Repeat 387811 387872 70 + . . scaffold193 GLEAN mRNA 387896 388689 0.47581 + . ID=CGI_10015241; scaffold193 TRF Tandem_Repeat 387896 388689 1161 + . . scaffold193 GLEAN mRNA 388771 389000 0.47581 + . ID=CGI_10015241; scaffold193 TRF Tandem_Repeat 388771 389000 426 + . . scaffold193 GLEAN mRNA 398842 399144 0.998922 + . ID=CGI_10015243; scaffold193 TRF Tandem_Repeat 398842 399144 366 + . . scaffold193 GLEAN mRNA 402099 402352 0.998922 + . ID=CGI_10015243; scaffold193 TRF Tandem_Repeat 402099 402352 447 + . . scaffold193 GLEAN mRNA 418190 418214 0.990769 - . ID=CGI_10015248; scaffold193 TRF Tandem_Repeat 418190 418214 50 + . . scaffold193 GLEAN mRNA 418213 418243 0.990769 - . ID=CGI_10015248; scaffold193 TRF Tandem_Repeat 418213 418243 62 + . . scaffold193 GLEAN mRNA 418388 418893 0.990769 - . ID=CGI_10015248; scaffold193 TRF Tandem_Repeat 418388 418893 967 + . . scaffold193 GLEAN mRNA 418005 418157 0.990769 - . ID=CGI_10015248; scaffold193 WUBlastX LINE_L2 418005 418157 69 - . . scaffold723 GLEAN mRNA 28826 28858 0.816854 - . ID=CGI_10015252; scaffold723 TRF Tandem_Repeat 28826 28858 66 + . . scaffold723 GLEAN mRNA 76391 76759 0.542233 + . ID=CGI_10015256; scaffold723 WUBlastX DNA_Sola 76391 76759 86 + . . scaffold723 GLEAN mRNA 80166 80459 0.542233 + . ID=CGI_10015256; scaffold723 WUBlastX DNA_Sola 80166 80459 66 + . . scaffold723 GLEAN mRNA 80468 80626 0.542233 + . ID=CGI_10015256; scaffold723 WUBlastX DNA_Sola 80468 80626 54 + . . scaffold723 GLEAN mRNA 91104 91148 0.797154 + . ID=CGI_10015257; scaffold723 TRF Tandem_Repeat 91104 91148 54 + . . scaffold723 GLEAN mRNA 105559 105650 0.797154 + . ID=CGI_10015257; scaffold723 TRF Tandem_Repeat 105559 105650 184 + . . scaffold723 GLEAN mRNA 127344 127430 0.99909 - . ID=CGI_10015258; scaffold723 TRF Tandem_Repeat 127344 127430 59 + . . scaffold723 GLEAN mRNA 132135 132193 0.246349 + . ID=CGI_10015259; scaffold723 TRF Tandem_Repeat 132135 132193 109 + . . scaffold723 GLEAN mRNA 139582 139655 0.246349 + . ID=CGI_10015259; scaffold723 TRF Tandem_Repeat 139582 139655 148 + . . scaffold723 GLEAN mRNA 170181 170236 0.999898 + . ID=CGI_10015262; scaffold723 TRF Tandem_Repeat 170181 170236 112 + . . scaffold723 GLEAN mRNA 211919 212098 0.999791 - . ID=CGI_10015263; scaffold723 TRF Tandem_Repeat 211919 212098 62 + . . scaffold723 GLEAN mRNA 212019 212103 0.999791 - . ID=CGI_10015263; scaffold723 TRF Tandem_Repeat 212019 212103 82 + . . scaffold723 GLEAN mRNA 206039 208108 0.999791 - . ID=CGI_10015263; scaffold723 WUBlastX LTR_Gypsy 206039 208108 1586 - . . scaffold723 GLEAN mRNA 209104 209604 0.999791 - . ID=CGI_10015263; scaffold723 WUBlastX LTR_Gypsy 209104 209604 85 - . . scaffold723 GLEAN mRNA 208111 209526 0.999791 - . ID=CGI_10015263; scaffold723 WUBlastX LTR_Gypsy 208111 209526 979 - . . scaffold723 GLEAN mRNA 209616 209957 0.999791 - . ID=CGI_10015263; scaffold723 WUBlastX LTR_Gypsy 209616 209957 292 - . . scaffold723 GLEAN mRNA 213563 213612 0.999791 - . ID=CGI_10015263; scaffold723 TRF Tandem_Repeat 213563 213612 84 + . . scaffold723 GLEAN mRNA 238403 238481 0.999348 - . ID=CGI_10015264; scaffold723 TRF Tandem_Repeat 238403 238481 86 + . . scaffold723 GLEAN mRNA 243982 244111 0.999348 - . ID=CGI_10015264; scaffold723 TRF Tandem_Repeat 243982 244111 260 + . . scaffold723 GLEAN mRNA 269312 269364 0.93117 - . ID=CGI_10015266; scaffold723 TRF Tandem_Repeat 269312 269364 54 + . . scaffold723 GLEAN mRNA 313507 313764 0.481188 + . ID=CGI_10015269; scaffold723 WUBlastX LINE_L1 313432 313908 51 + . . scaffold723 GLEAN mRNA 313507 313758 0.481188 + . ID=CGI_10015269; scaffold723 WUBlastX LINE_L1 313240 313758 46 + . . scaffold723 GLEAN mRNA 351477 352256 0.539645 + . ID=CGI_10015272; scaffold723 TRF Tandem_Repeat 351477 352256 963 + . . scaffold723 GLEAN mRNA 353983 354177 0.539645 + . ID=CGI_10015272; scaffold723 TRF Tandem_Repeat 353983 354177 183 + . . scaffold723 GLEAN mRNA 372038 372082 0.54627 + . ID=CGI_10015274; scaffold723 TRF Tandem_Repeat 372038 372082 90 + . . scaffold723 GLEAN mRNA 372440 372485 0.54627 + . ID=CGI_10015274; scaffold723 TRF Tandem_Repeat 372440 372485 92 + . . scaffold723 GLEAN mRNA 377948 378334 0.54627 + . ID=CGI_10015274; scaffold723 TRF Tandem_Repeat 377948 378334 432 + . . scaffold723 GLEAN mRNA 382706 385000 0.54627 + . ID=CGI_10015274; scaffold723 TRF Tandem_Repeat 382706 385000 2832 + . . scaffold723 GLEAN mRNA 382706 385000 0.54627 + . ID=CGI_10015274; scaffold723 TRF Tandem_Repeat 382706 385000 2946 + . . scaffold723 GLEAN mRNA 397085 397314 0.999949 - . ID=CGI_10015275; scaffold723 TRF Tandem_Repeat 397085 397314 255 + . . scaffold723 GLEAN mRNA 401803 404060 0.999949 - . ID=CGI_10015275; scaffold723 TRF Tandem_Repeat 401803 404060 3183 + . . scaffold723 GLEAN mRNA 405031 405085 0.999949 - . ID=CGI_10015275; scaffold723 TRF Tandem_Repeat 405031 405085 110 + . . scaffold723 GLEAN mRNA 408759 408789 0.999949 - . ID=CGI_10015275; scaffold723 TRF Tandem_Repeat 408759 408789 53 + . . scaffold723 GLEAN mRNA 398718 398873 0.999949 - . ID=CGI_10015275; scaffold723 WUBlastX LINE_RTE-BovB 398718 398873 56 + . . scaffold723 GLEAN mRNA 398878 399879 0.999949 - . ID=CGI_10015275; scaffold723 WUBlastX LINE_RTE-BovB 398878 399879 440 + . . scaffold44008 GLEAN mRNA 35492 35608 0.537986 + . ID=CGI_10015280; scaffold44008 WUBlastX DNA_Harbinger 35468 35608 40 + . . scaffold44008 GLEAN mRNA 35927 36124 0.537986 + . ID=CGI_10015280; scaffold44008 WUBlastX DNA_Harbinger 35927 36124 34 + . . scaffold44008 GLEAN mRNA 39485 40281 0.508026 - . ID=CGI_10015282; scaffold44008 TRF Tandem_Repeat 39485 40281 1425 + . . scaffold44008 GLEAN mRNA 43220 43273 0.508026 - . ID=CGI_10015282; scaffold44008 TRF Tandem_Repeat 43220 43273 54 + . . scaffold44008 GLEAN mRNA 44692 44765 0.508026 - . ID=CGI_10015282; scaffold44008 TRF Tandem_Repeat 44692 44765 53 + . . scaffold44008 GLEAN mRNA 37042 37440 0.508026 - . ID=CGI_10015282; scaffold44008 WUBlastX DNA_Harbinger 37042 37440 307 - . . scaffold44008 GLEAN mRNA 37443 38204 0.508026 - . ID=CGI_10015282; scaffold44008 WUBlastX DNA_Harbinger 37443 38204 528 - . . scaffold44008 GLEAN mRNA 36972 37076 0.508026 - . ID=CGI_10015282; scaffold44008 WUBlastX DNA_Harbinger 36972 37076 50 - . . scaffold44008 GLEAN mRNA 121801 121853 1 - . ID=CGI_10015285; scaffold44008 TRF Tandem_Repeat 121801 121853 106 + . . scaffold44008 GLEAN mRNA 136843 136896 1 - . ID=CGI_10015287; scaffold44008 TRF Tandem_Repeat 136843 136896 101 + . . scaffold44008 GLEAN mRNA 177280 177398 0.761228 - . ID=CGI_10015290; scaffold44008 TRF Tandem_Repeat 177280 177398 141 + . . scaffold44008 GLEAN mRNA 179642 179911 0.761228 - . ID=CGI_10015290; scaffold44008 WUBlastX LINE_CR1-L2 179642 179911 100 - . . scaffold44008 GLEAN mRNA 179007 179570 0.761228 - . ID=CGI_10015290; scaffold44008 WUBlastX LINE_L2 179007 179570 68 - . . scaffold44008 GLEAN mRNA 179597 179869 0.761228 - . ID=CGI_10015290; scaffold44008 WUBlastX LINE_L2 179597 179869 112 - . . scaffold44008 GLEAN mRNA 180765 180956 0.761228 - . ID=CGI_10015290; scaffold44008 WUBlastX LINE_L2 180765 180956 27 - . . scaffold44008 GLEAN mRNA 183429 183502 1 + . ID=CGI_10015291; scaffold44008 TRF Tandem_Repeat 183429 183502 148 + . . scaffold44008 GLEAN mRNA 221902 221977 0.999676 - . ID=CGI_10015294; scaffold44008 TRF Tandem_Repeat 221902 221977 143 + . . scaffold44008 GLEAN mRNA 221902 221977 0.999675 + . ID=CGI_10015295; scaffold44008 TRF Tandem_Repeat 221902 221977 143 + . . scaffold44008 GLEAN mRNA 225424 225461 0.999675 + . ID=CGI_10015295; scaffold44008 TRF Tandem_Repeat 225424 225461 76 + . . scaffold44008 GLEAN mRNA 225424 225461 1 - . ID=CGI_10015296; scaffold44008 TRF Tandem_Repeat 225424 225461 76 + . . scaffold44008 GLEAN mRNA 347685 347721 0.593198 - . ID=CGI_10015299; scaffold44008 TRF Tandem_Repeat 347685 347721 74 + . . scaffold44008 GLEAN mRNA 353896 354204 0.499838 + . ID=CGI_10015300; scaffold44008 WUBlastX DNA_hAT-Tip100 353896 354204 47 + . . scaffold44008 GLEAN mRNA 353896 354108 0.499838 + . ID=CGI_10015300; scaffold44008 WUBlastX DNA_hAT-Tip100 353896 354108 97 + . . scaffold44008 GLEAN mRNA 354618 354848 0.499838 + . ID=CGI_10015300; scaffold44008 WUBlastX DNA_hAT-Tip100 354618 354848 59 + . . scaffold44008 GLEAN mRNA 353929 354411 0.499838 + . ID=CGI_10015300; scaffold44008 WUBlastX DNA_hAT 353929 354411 41 + . . scaffold44008 GLEAN mRNA 354420 354809 0.499838 + . ID=CGI_10015300; scaffold44008 WUBlastX DNA_hAT-Tip100 354420 354809 128 + . . scaffold44008 GLEAN mRNA 353896 354282 0.499838 + . ID=CGI_10015300; scaffold44008 WUBlastX DNA_hAT-Tip100 353896 354282 46 + . . scaffold44008 GLEAN mRNA 399193 399218 0.99947 + . ID=CGI_10015301; scaffold44008 TRF Tandem_Repeat 399193 399218 52 + . . scaffold165 GLEAN mRNA 7117 7186 0.476218 + . ID=CGI_10015304; scaffold165 TRF Tandem_Repeat 7117 7186 113 + . . scaffold165 GLEAN mRNA 11581 12450 0.476218 + . ID=CGI_10015304; scaffold165 TRF Tandem_Repeat 11581 12450 1264 + . . scaffold165 GLEAN mRNA 13407 13553 0.476218 + . ID=CGI_10015304; scaffold165 TRF Tandem_Repeat 13407 13553 64 + . . scaffold165 GLEAN mRNA 13478 13598 0.476218 + . ID=CGI_10015304; scaffold165 TRF Tandem_Repeat 13478 13598 84 + . . scaffold165 GLEAN mRNA 16578 16620 0.476218 + . ID=CGI_10015304; scaffold165 TRF Tandem_Repeat 16578 16620 68 + . . scaffold165 GLEAN mRNA 15731 16492 0.476218 + . ID=CGI_10015304; scaffold165 TRF Tandem_Repeat 15731 16492 1060 + . . scaffold165 GLEAN mRNA 33370 33930 1 + . ID=CGI_10015309; scaffold165 WUBlastX LINE_RTE-X 33370 33930 126 + . . scaffold165 GLEAN mRNA 33915 33933 1 + . ID=CGI_10015309; scaffold165 WUBlastX LINE_RTE-X 33915 34010 67 + . . scaffold165 GLEAN mRNA 33307 33720 1 + . ID=CGI_10015309; scaffold165 WUBlastX LTR_Copia 33292 33720 21 + . . scaffold165 GLEAN mRNA 36214 36663 0.531436 - . ID=CGI_10015310; scaffold165 WUBlastX LINE_L2 36214 36663 31 - . . scaffold165 GLEAN mRNA 36208 36555 0.531436 - . ID=CGI_10015310; scaffold165 WUBlastX LINE_RTE-X 36208 36555 32 - . . scaffold165 GLEAN mRNA 46011 46364 0.53486 + . ID=CGI_10015311; scaffold165 TRF Tandem_Repeat 46011 46364 487 + . . scaffold165 GLEAN mRNA 46138 46205 0.53486 + . ID=CGI_10015311; scaffold165 TRF Tandem_Repeat 46138 46205 55 + . . scaffold165 GLEAN mRNA 46608 47656 0.53486 + . ID=CGI_10015311; scaffold165 TRF Tandem_Repeat 46608 47869 1051 + . . scaffold165 GLEAN mRNA 46821 46944 0.53486 + . ID=CGI_10015311; scaffold165 TRF Tandem_Repeat 46821 46944 58 + . . scaffold165 GLEAN mRNA 47572 47642 0.53486 + . ID=CGI_10015311; scaffold165 TRF Tandem_Repeat 47572 47642 66 + . . scaffold165 GLEAN mRNA 114298 114342 0.998921 + . ID=CGI_10015315; scaffold165 WUBlastX LTR_Gypsy 114298 114342 20 + . . scaffold165 GLEAN mRNA 110645 110923 0.998921 + . ID=CGI_10015315; scaffold165 WUBlastX LTR_Gypsy 110645 110923 29 + . . scaffold165 GLEAN mRNA 110693 110923 0.998921 + . ID=CGI_10015315; scaffold165 WUBlastX LTR_Gypsy 110693 110923 46 + . . scaffold165 GLEAN mRNA 110693 111025 0.998921 + . ID=CGI_10015315; scaffold165 WUBlastX LTR_Gypsy 110693 111025 44 + . . scaffold165 GLEAN mRNA 111145 112086 0.998921 + . ID=CGI_10015315; scaffold165 WUBlastX LTR_Gypsy 111145 112086 433 + . . scaffold165 GLEAN mRNA 112520 113827 0.998921 + . ID=CGI_10015315; scaffold165 WUBlastX LTR_Gypsy 112520 113827 971 + . . scaffold165 GLEAN mRNA 111127 111189 0.998921 + . ID=CGI_10015315; scaffold165 WUBlastX LTR_Gypsy 111127 111189 22 + . . scaffold165 GLEAN mRNA 112422 112535 0.998921 + . ID=CGI_10015315; scaffold165 WUBlastX LTR_Gypsy 112422 112535 26 + . . scaffold165 GLEAN mRNA 111139 111867 0.998921 + . ID=CGI_10015315; scaffold165 WUBlastX LTR_Gypsy 111139 111867 524 + . . scaffold165 GLEAN mRNA 111846 112427 0.998921 + . ID=CGI_10015315; scaffold165 WUBlastX LTR_Gypsy 111846 112427 359 + . . scaffold165 GLEAN mRNA 119247 119553 0.998921 + . ID=CGI_10015315; scaffold165 TRF Tandem_Repeat 119247 119553 614 + . . scaffold165 GLEAN mRNA 141731 142185 0.352689 + . ID=CGI_10015318; scaffold165 TRF Tandem_Repeat 141731 142185 645 + . . scaffold165 GLEAN mRNA 147562 148859 0.5 - . ID=CGI_10015320; scaffold165 TRF Tandem_Repeat 147562 148859 1650 + . . scaffold165 GLEAN mRNA 198520 198783 1 + . ID=CGI_10015323; scaffold165 WUBlastX LTR_Pao 198520 198783 47 - . . scaffold165 GLEAN mRNA 198406 198786 1 + . ID=CGI_10015323; scaffold165 WUBlastX LTR_Pao 198406 198786 27 - . . scaffold165 GLEAN mRNA 197614 198042 1 + . ID=CGI_10015323; scaffold165 WUBlastX LTR_Pao 197614 198042 153 - . . scaffold165 GLEAN mRNA 198867 198983 1 + . ID=CGI_10015323; scaffold165 WUBlastX LTR_Pao 198867 198983 28 - . . scaffold165 GLEAN mRNA 197644 198333 1 + . ID=CGI_10015323; scaffold165 WUBlastX LTR_Pao 197644 198333 30 - . . scaffold165 GLEAN mRNA 199350 199451 1 + . ID=CGI_10015323; scaffold165 WUBlastX LTR_Pao 199350 199451 36 - . . scaffold165 GLEAN mRNA 197644 198198 1 + . ID=CGI_10015323; scaffold165 WUBlastX LTR_Pao 197644 198198 126 - . . scaffold165 GLEAN mRNA 210277 210535 0.999676 + . ID=CGI_10015324; scaffold165 TRF Tandem_Repeat 210277 210535 164 + . . scaffold165 GLEAN mRNA 210352 210556 0.999676 + . ID=CGI_10015324; scaffold165 TRF Tandem_Repeat 210352 210556 267 + . . scaffold165 GLEAN mRNA 227589 228308 1 + . ID=CGI_10015326; scaffold165 TRF Tandem_Repeat 227589 228308 1359 + . . scaffold165 GLEAN mRNA 241435 241858 0.988019 - . ID=CGI_10015327; scaffold165 TRF Tandem_Repeat 241435 241858 699 + . . scaffold165 GLEAN mRNA 246226 246318 0.988019 - . ID=CGI_10015327; scaffold165 TRF Tandem_Repeat 246226 246318 186 + . . scaffold165 GLEAN mRNA 305122 305772 0.249814 - . ID=CGI_10015330; scaffold165 WUBlastX LINE_L1 305122 305772 42 - . . scaffold165 GLEAN mRNA 306997 307641 0.249814 - . ID=CGI_10015330; scaffold165 WUBlastX DNA_En-Spm 306997 307641 199 - . . scaffold165 GLEAN mRNA 306877 307470 0.249814 - . ID=CGI_10015330; scaffold165 WUBlastX DNA_En-Spm 306877 307470 36 - . . scaffold165 GLEAN mRNA 305281 306822 0.249814 - . ID=CGI_10015330; scaffold165 WUBlastX LINE_L1-Tx1 305281 306822 539 - . . scaffold165 GLEAN mRNA 374986 376244 0.999778 - . ID=CGI_10015331; scaffold165 TRF Tandem_Repeat 374986 376244 1538 + . . scaffold165 GLEAN mRNA 375292 376244 0.999778 - . ID=CGI_10015331; scaffold165 TRF Tandem_Repeat 375292 376244 1190 + . . scaffold165 GLEAN mRNA 382159 383555 0.999778 - . ID=CGI_10015331; scaffold165 TRF Tandem_Repeat 382159 383555 1873 + . . scaffold165 GLEAN mRNA 382159 383562 0.999778 - . ID=CGI_10015331; scaffold165 TRF Tandem_Repeat 382159 383562 1874 + . . scaffold165 GLEAN mRNA 384747 384794 0.999778 - . ID=CGI_10015331; scaffold165 TRF Tandem_Repeat 384747 384794 78 + . . scaffold165 GLEAN mRNA 385147 385185 0.999778 - . ID=CGI_10015331; scaffold165 TRF Tandem_Repeat 385147 385185 78 + . . scaffold165 GLEAN mRNA 385549 385661 0.999778 - . ID=CGI_10015331; scaffold165 TRF Tandem_Repeat 385549 385661 92 + . . scaffold165 GLEAN mRNA 385814 386201 0.999778 - . ID=CGI_10015331; scaffold165 TRF Tandem_Repeat 385814 386201 571 + . . scaffold165 GLEAN mRNA 386206 386555 0.999778 - . ID=CGI_10015331; scaffold165 TRF Tandem_Repeat 386206 386555 522 + . . scaffold165 GLEAN mRNA 380877 380990 0.999778 - . ID=CGI_10015331; scaffold165 WUBlastX LINE_L1-Tx1 380877 380990 36 - . . scaffold165 GLEAN mRNA 380959 381249 0.999778 - . ID=CGI_10015331; scaffold165 WUBlastX LINE_L1-Tx1 380959 381249 54 - . . scaffold165 GLEAN mRNA 402226 402492 0.999998 + . ID=CGI_10015333; scaffold165 TRF Tandem_Repeat 402226 402492 171 + . . scaffold165 GLEAN mRNA 405872 406258 0.999998 + . ID=CGI_10015333; scaffold165 TRF Tandem_Repeat 405872 406258 701 + . . scaffold165 GLEAN mRNA 416884 417128 0.999997 - . ID=CGI_10015334; scaffold165 TRF Tandem_Repeat 416884 417128 185 + . . scaffold165 GLEAN mRNA 416884 417079 0.999997 - . ID=CGI_10015334; scaffold165 TRF Tandem_Repeat 416884 417079 218 + . . scaffold165 GLEAN mRNA 417561 417825 0.999997 - . ID=CGI_10015334; scaffold165 TRF Tandem_Repeat 417561 417825 130 + . . scaffold165 GLEAN mRNA 417557 417825 0.999997 - . ID=CGI_10015334; scaffold165 TRF Tandem_Repeat 417557 417825 254 + . . scaffold1160 GLEAN mRNA 28577 28897 0.995277 + . ID=CGI_10015340; scaffold1160 WUBlastX DNA_hAT-Tip100 28577 28897 75 + . . scaffold1160 GLEAN mRNA 28577 28834 0.995277 + . ID=CGI_10015340; scaffold1160 WUBlastX DNA_hAT-Tip100 28577 28834 89 + . . scaffold1160 GLEAN mRNA 31182 31234 0.998151 + . ID=CGI_10015341; scaffold1160 TRF Tandem_Repeat 31182 31234 61 + . . scaffold1160 GLEAN mRNA 31182 31234 0.998151 + . ID=CGI_10015341; scaffold1160 TRF Tandem_Repeat 31182 31234 61 + . . scaffold1160 GLEAN mRNA 56257 56413 1 + . ID=CGI_10015344; scaffold1160 TRF Tandem_Repeat 56257 56413 269 + . . scaffold1160 GLEAN mRNA 56271 56349 1 + . ID=CGI_10015344; scaffold1160 TRF Tandem_Repeat 56271 56349 50 + . . scaffold1160 GLEAN mRNA 120703 120933 0.290577 - . ID=CGI_10015349; scaffold1160 WUBlastX DNA_hAT-Blackja 120703 120933 28 + . . scaffold1160 GLEAN mRNA 240137 240319 0.999675 - . ID=CGI_10015352; scaffold1160 TRF Tandem_Repeat 240137 240319 233 + . . scaffold1160 GLEAN mRNA 260141 260968 0.999999 - . ID=CGI_10015353; scaffold1160 WUBlastX LINE_RTE-X 260141 260968 91 + . . scaffold1160 GLEAN mRNA 260129 260698 0.999999 - . ID=CGI_10015353; scaffold1160 WUBlastX LINE_RTE-X 260129 260698 133 + . . scaffold1160 GLEAN mRNA 263297 263355 0.999999 - . ID=CGI_10015353; scaffold1160 TRF Tandem_Repeat 263297 263355 118 + . . scaffold1160 GLEAN mRNA 262210 262947 0.999999 - . ID=CGI_10015353; scaffold1160 WUBlastX LINE_RTE-X 262210 262947 131 + . . scaffold1160 GLEAN mRNA 285816 285878 0.999945 - . ID=CGI_10015355; scaffold1160 TRF Tandem_Repeat 285816 285878 126 + . . scaffold1160 GLEAN mRNA 353030 353074 0.989896 + . ID=CGI_10015360; scaffold1160 TRF Tandem_Repeat 353030 353074 90 + . . scaffold1160 GLEAN mRNA 371134 371175 0.989896 + . ID=CGI_10015360; scaffold1160 TRF Tandem_Repeat 371134 371175 57 + . . scaffold1160 GLEAN mRNA 361213 363072 0.989896 + . ID=CGI_10015360; scaffold1160 WUBlastX DNA_Sola 361213 363072 571 - . . scaffold1160 GLEAN mRNA 379454 379519 0.989896 + . ID=CGI_10015360; scaffold1160 TRF Tandem_Repeat 379454 379519 51 + . . scaffold1160 GLEAN mRNA 381290 381353 0.989896 + . ID=CGI_10015360; scaffold1160 TRF Tandem_Repeat 381290 381353 65 + . . scaffold1160 GLEAN mRNA 381304 381350 0.989896 + . ID=CGI_10015360; scaffold1160 TRF Tandem_Repeat 381304 381350 58 + . . scaffold1160 GLEAN mRNA 381530 381615 0.989896 + . ID=CGI_10015360; scaffold1160 TRF Tandem_Repeat 381530 381615 82 + . . scaffold1160 GLEAN mRNA 381530 381626 0.989896 + . ID=CGI_10015360; scaffold1160 TRF Tandem_Repeat 381530 381626 68 + . . scaffold1160 GLEAN mRNA 382140 382175 0.989896 + . ID=CGI_10015360; scaffold1160 TRF Tandem_Repeat 382140 382175 72 + . . scaffold1160 GLEAN mRNA 388408 388441 0.989896 + . ID=CGI_10015360; scaffold1160 TRF Tandem_Repeat 388408 388441 68 + . . scaffold1138 GLEAN mRNA 40713 40758 0.999351 - . ID=CGI_10015365; scaffold1138 TRF Tandem_Repeat 40713 40758 67 + . . scaffold1138 GLEAN mRNA 76717 76766 0.544788 - . ID=CGI_10015367; scaffold1138 TRF Tandem_Repeat 76717 76766 57 + . . scaffold1138 GLEAN mRNA 175902 176087 0.789389 + . ID=CGI_10015372; scaffold1138 WUBlastX LTR_Gypsy 175902 176087 38 + . . scaffold1138 GLEAN mRNA 175441 176451 0.789389 + . ID=CGI_10015372; scaffold1138 WUBlastX LTR_Gypsy 175441 176451 32 + . . scaffold1138 GLEAN mRNA 176098 176454 0.789389 + . ID=CGI_10015372; scaffold1138 WUBlastX LTR_Gypsy 176098 176454 84 + . . scaffold1138 GLEAN mRNA 174466 174477 0.789389 + . ID=CGI_10015372; scaffold1138 WUBlastX LTR_Gypsy 174337 174477 34 + . . scaffold1138 GLEAN mRNA 189705 190187 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 189705 190187 124 + . . scaffold1138 GLEAN mRNA 185523 185804 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX LINE_CR1 185523 185804 109 + . . scaffold1138 GLEAN mRNA 190172 191221 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 190172 191221 131 + . . scaffold1138 GLEAN mRNA 185523 185879 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX LINE_CR1 185523 185879 70 + . . scaffold1138 GLEAN mRNA 185523 185960 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX LINE_L2 185523 185960 29 + . . scaffold1138 GLEAN mRNA 189525 190187 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 189525 190187 104 + . . scaffold1138 GLEAN mRNA 189076 189189 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 189076 189189 24 + . . scaffold1138 GLEAN mRNA 192033 192154 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX LINE_Jockey 192033 192251 33 - . . scaffold1138 GLEAN mRNA 192030 192154 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX LINE_L2 192030 192215 35 - . . scaffold1138 GLEAN mRNA 185466 185804 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX LINE_CR1 185466 185804 90 + . . scaffold1138 GLEAN mRNA 191003 191308 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX DNA_P 191003 191308 44 + . . scaffold1138 GLEAN mRNA 189705 190187 0.716431 + . ID=CGI_10015374; scaffold1138 WUBlastX DNA_P 189705 190187 124 + . . scaffold1138 GLEAN mRNA 190172 191221 0.716431 + . ID=CGI_10015374; scaffold1138 WUBlastX DNA_P 190172 191221 131 + . . scaffold1138 GLEAN mRNA 189525 190187 0.716431 + . ID=CGI_10015374; scaffold1138 WUBlastX DNA_P 189525 190187 104 + . . scaffold1138 GLEAN mRNA 189076 189189 0.716431 + . ID=CGI_10015374; scaffold1138 WUBlastX DNA_P 189076 189189 24 + . . scaffold1138 GLEAN mRNA 191003 191308 0.716431 + . ID=CGI_10015374; scaffold1138 WUBlastX DNA_P 191003 191308 44 + . . scaffold1138 GLEAN mRNA 275017 275997 0.221988 + . ID=CGI_10015375; scaffold1138 WUBlastX DNA_En-Spm 275017 275997 644 + . . scaffold1138 GLEAN mRNA 275952 276137 0.221988 + . ID=CGI_10015375; scaffold1138 WUBlastX DNA_En-Spm 275952 276137 61 + . . scaffold1138 GLEAN mRNA 274314 275024 0.221988 + . ID=CGI_10015375; scaffold1138 WUBlastX DNA_En-Spm 274314 275024 397 + . . scaffold1138 GLEAN mRNA 288922 289320 0.221988 + . ID=CGI_10015375; scaffold1138 WUBlastX DNA_TcMar-Fot1 288922 289320 138 + . . scaffold1138 GLEAN mRNA 296461 296673 0.998782 - . ID=CGI_10015377; scaffold1138 WUBlastX DNA_Harbinger 296461 296673 73 + . . scaffold1138 GLEAN mRNA 329532 329595 0.623483 - . ID=CGI_10015379; scaffold1138 TRF Tandem_Repeat 329532 329595 101 + . . scaffold1138 GLEAN mRNA 354732 355246 0.999341 + . ID=CGI_10015381; scaffold1138 TRF Tandem_Repeat 354732 355246 715 + . . scaffold1138 GLEAN mRNA 361363 361394 0.999341 + . ID=CGI_10015381; scaffold1138 TRF Tandem_Repeat 361363 361394 57 + . . scaffold616 GLEAN mRNA 24207 24238 0.690684 - . ID=CGI_10015383; scaffold616 TRF Tandem_Repeat 24207 24238 64 + . . scaffold616 GLEAN mRNA 25182 27803 0.690684 - . ID=CGI_10015383; scaffold616 WUBlastX LINE_RTE-X 25182 27803 821 - . . scaffold616 GLEAN mRNA 24830 25156 0.690684 - . ID=CGI_10015383; scaffold616 WUBlastX LINE_RTE-X 24830 25156 106 - . . scaffold616 GLEAN mRNA 34887 34930 0.690684 - . ID=CGI_10015383; scaffold616 TRF Tandem_Repeat 34887 34930 88 + . . scaffold616 GLEAN mRNA 58197 58244 1 + . ID=CGI_10015384; scaffold616 TRF Tandem_Repeat 58197 58244 55 + . . scaffold616 GLEAN mRNA 83266 84049 0.9915 - . ID=CGI_10015386; scaffold616 TRF Tandem_Repeat 83266 84049 986 + . . scaffold616 GLEAN mRNA 83267 84437 0.9915 - . ID=CGI_10015386; scaffold616 TRF Tandem_Repeat 83267 84437 1030 + . . scaffold616 GLEAN mRNA 83266 84049 0.9915 - . ID=CGI_10015386; scaffold616 TRF Tandem_Repeat 83266 84049 1127 + . . scaffold616 GLEAN mRNA 84138 84437 0.9915 - . ID=CGI_10015386; scaffold616 TRF Tandem_Repeat 84138 84437 215 + . . scaffold616 GLEAN mRNA 84151 84456 0.9915 - . ID=CGI_10015386; scaffold616 TRF Tandem_Repeat 84151 84456 464 + . . scaffold616 GLEAN mRNA 100363 100746 0.9915 - . ID=CGI_10015386; scaffold616 TRF Tandem_Repeat 100363 100746 430 + . . scaffold616 GLEAN mRNA 100363 100746 0.765787 + . ID=CGI_10015388; scaffold616 TRF Tandem_Repeat 100363 100746 430 + . . scaffold616 GLEAN mRNA 128107 128604 1 + . ID=CGI_10015389; scaffold616 WUBlastX LINE_L1-Tx1 128107 128604 206 + . . scaffold616 GLEAN mRNA 128071 128757 1 + . ID=CGI_10015389; scaffold616 WUBlastX LINE_L1-Tx1 128071 128757 196 + . . scaffold616 GLEAN mRNA 128140 128868 1 + . ID=CGI_10015389; scaffold616 WUBlastX LINE_L1-Tx1 128140 128868 81 + . . scaffold616 GLEAN mRNA 133923 134026 1 + . ID=CGI_10015389; scaffold616 TRF Tandem_Repeat 133923 134026 100 + . . scaffold616 GLEAN mRNA 185953 186439 0.702385 + . ID=CGI_10015392; scaffold616 TRF Tandem_Repeat 185953 186439 929 + . . scaffold616 GLEAN mRNA 185977 186091 0.702385 + . ID=CGI_10015392; scaffold616 TRF Tandem_Repeat 185977 186091 66 + . . scaffold616 GLEAN mRNA 197041 197082 0.996732 - . ID=CGI_10015393; scaffold616 TRF Tandem_Repeat 197041 197082 84 + . . scaffold616 GLEAN mRNA 210551 210600 1 + . ID=CGI_10015394; scaffold616 TRF Tandem_Repeat 210551 210600 100 + . . scaffold616 GLEAN mRNA 214392 214590 0.577516 + . ID=CGI_10015395; scaffold616 TRF Tandem_Repeat 214392 214590 317 + . . scaffold616 GLEAN mRNA 214469 214569 0.577516 + . ID=CGI_10015395; scaffold616 TRF Tandem_Repeat 214469 214569 85 + . . scaffold616 GLEAN mRNA 225491 226490 0.999709 - . ID=CGI_10015396; scaffold616 TRF Tandem_Repeat 225491 226490 1346 + . . scaffold616 GLEAN mRNA 227888 228311 0.999709 - . ID=CGI_10015396; scaffold616 TRF Tandem_Repeat 227888 228311 683 + . . scaffold616 GLEAN mRNA 229089 229292 0.999709 - . ID=CGI_10015396; scaffold616 TRF Tandem_Repeat 229089 229292 241 + . . scaffold616 GLEAN mRNA 230308 230345 0.999709 - . ID=CGI_10015396; scaffold616 TRF Tandem_Repeat 230308 230345 67 + . . scaffold616 GLEAN mRNA 237259 238285 0.999676 - . ID=CGI_10015397; scaffold616 TRF Tandem_Repeat 237259 238285 1414 + . . scaffold616 GLEAN mRNA 240199 240248 0.999676 - . ID=CGI_10015397; scaffold616 TRF Tandem_Repeat 240199 240248 100 + . . scaffold616 GLEAN mRNA 240410 242267 0.999676 - . ID=CGI_10015397; scaffold616 TRF Tandem_Repeat 240410 242267 2791 + . . scaffold616 GLEAN mRNA 243228 243408 0.999676 - . ID=CGI_10015397; scaffold616 TRF Tandem_Repeat 243228 243408 263 + . . scaffold616 GLEAN mRNA 247021 247119 0.999676 - . ID=CGI_10015398; scaffold616 TRF Tandem_Repeat 247021 247119 107 + . . scaffold616 GLEAN mRNA 247004 247107 0.999676 - . ID=CGI_10015398; scaffold616 TRF Tandem_Repeat 247004 247107 144 + . . scaffold616 GLEAN mRNA 247004 247119 0.999676 - . ID=CGI_10015398; scaffold616 TRF Tandem_Repeat 247004 247119 124 + . . scaffold616 GLEAN mRNA 247021 247115 0.999676 - . ID=CGI_10015398; scaffold616 TRF Tandem_Repeat 247021 247115 145 + . . scaffold616 GLEAN mRNA 248399 248673 0.999676 - . ID=CGI_10015398; scaffold616 TRF Tandem_Repeat 248399 248673 442 + . . scaffold616 GLEAN mRNA 266720 266773 0.482292 - . ID=CGI_10015400; scaffold616 TRF Tandem_Repeat 266720 266773 108 + . . scaffold616 GLEAN mRNA 269925 269976 0.482292 - . ID=CGI_10015400; scaffold616 TRF Tandem_Repeat 269925 269976 104 + . . scaffold616 GLEAN mRNA 303202 303254 0.291668 - . ID=CGI_10015401; scaffold616 TRF Tandem_Repeat 303202 303254 99 + . . scaffold616 GLEAN mRNA 308943 308999 1 + . ID=CGI_10015402; scaffold616 TRF Tandem_Repeat 308943 308999 78 + . . scaffold616 GLEAN mRNA 308943 308999 0.842956 - . ID=CGI_10015403; scaffold616 TRF Tandem_Repeat 308943 308999 78 + . . scaffold616 GLEAN mRNA 311980 312105 0.842956 - . ID=CGI_10015403; scaffold616 TRF Tandem_Repeat 311980 312105 216 + . . scaffold616 GLEAN mRNA 313313 313484 0.842956 - . ID=CGI_10015403; scaffold616 TRF Tandem_Repeat 313313 313484 214 + . . scaffold616 GLEAN mRNA 316097 316154 0.842956 - . ID=CGI_10015403; scaffold616 TRF Tandem_Repeat 316097 316154 116 + . . scaffold616 GLEAN mRNA 320863 320939 0.842956 - . ID=CGI_10015403; scaffold616 TRF Tandem_Repeat 320863 320939 129 + . . scaffold616 GLEAN mRNA 325588 325633 0.842956 - . ID=CGI_10015403; scaffold616 TRF Tandem_Repeat 325588 325633 65 + . . scaffold616 GLEAN mRNA 325671 325716 0.842956 - . ID=CGI_10015403; scaffold616 TRF Tandem_Repeat 325671 325716 92 + . . scaffold616 GLEAN mRNA 317263 317913 0.842956 - . ID=CGI_10015403; scaffold616 WUBlastX LINE_RTE-BovB 317263 317913 309 + . . scaffold616 GLEAN mRNA 314635 315513 0.842956 - . ID=CGI_10015403; scaffold616 WUBlastX LINE_RTE-BovB 314635 315513 338 + . . scaffold616 GLEAN mRNA 314416 315192 0.842956 - . ID=CGI_10015403; scaffold616 WUBlastX LINE_RTE-BovB 314416 315192 190 + . . scaffold616 GLEAN mRNA 314635 316053 0.842956 - . ID=CGI_10015403; scaffold616 WUBlastX LINE_RTE-BovB 314635 316053 309 + . . scaffold616 GLEAN mRNA 316629 316673 0.842956 - . ID=CGI_10015403; scaffold616 WUBlastX LINE_RTE-BovB 316629 316673 30 + . . scaffold616 GLEAN mRNA 316661 317218 0.842956 - . ID=CGI_10015403; scaffold616 WUBlastX LINE_RTE-BovB 316661 317218 422 + . . scaffold616 GLEAN mRNA 337401 337469 0.466499 - . ID=CGI_10015404; scaffold616 TRF Tandem_Repeat 337401 337469 120 + . . scaffold616 GLEAN mRNA 337398 337469 0.466499 - . ID=CGI_10015404; scaffold616 TRF Tandem_Repeat 337398 337469 90 + . . scaffold616 GLEAN mRNA 356246 356278 0.74611 + . ID=CGI_10015407; scaffold616 TRF Tandem_Repeat 356246 356278 66 + . . scaffold616 GLEAN mRNA 356827 356889 0.74611 + . ID=CGI_10015407; scaffold616 TRF Tandem_Repeat 356827 356889 126 + . . scaffold616 GLEAN mRNA 407455 407955 0.924853 - . ID=CGI_10015408; scaffold616 WUBlastX DNA_PiggyBac 407455 407955 117 - . . scaffold616 GLEAN mRNA 407479 407826 0.924853 - . ID=CGI_10015408; scaffold616 WUBlastX DNA_PiggyBac 407479 407826 181 - . . scaffold616 GLEAN mRNA 420001 420063 0.924853 - . ID=CGI_10015408; scaffold616 TRF Tandem_Repeat 420001 420063 81 + . . scaffold1469 GLEAN mRNA 65454 65604 0.54485 + . ID=CGI_10015411; scaffold1469 TRF Tandem_Repeat 65454 65604 230 + . . scaffold1469 GLEAN mRNA 123561 123628 0.358465 + . ID=CGI_10015414; scaffold1469 TRF Tandem_Repeat 123561 123628 136 + . . scaffold1469 GLEAN mRNA 129749 129800 0.358465 + . ID=CGI_10015414; scaffold1469 TRF Tandem_Repeat 129749 129800 104 + . . scaffold1469 GLEAN mRNA 155351 155393 0.358465 + . ID=CGI_10015414; scaffold1469 TRF Tandem_Repeat 155351 155393 86 + . . scaffold1469 GLEAN mRNA 241606 242149 0.973044 - . ID=CGI_10015418; scaffold1469 TRF Tandem_Repeat 241606 242149 633 + . . scaffold1469 GLEAN mRNA 253606 253638 1 - . ID=CGI_10015420; scaffold1469 TRF Tandem_Repeat 253606 253638 57 + . . scaffold1469 GLEAN mRNA 256703 257957 1 - . ID=CGI_10015422; scaffold1469 TRF Tandem_Repeat 256703 257957 1396 + . . scaffold1469 GLEAN mRNA 256703 257957 1 - . ID=CGI_10015422; scaffold1469 TRF Tandem_Repeat 256703 257957 1468 + . . scaffold1469 GLEAN mRNA 303013 303055 1 + . ID=CGI_10015425; scaffold1469 TRF Tandem_Repeat 303013 303055 86 + . . scaffold1469 GLEAN mRNA 331240 334059 0.937512 - . ID=CGI_10015428; scaffold1469 WUBlastX DNA_Zator 331240 334059 1412 + . . scaffold1469 GLEAN mRNA 334210 334389 0.937512 - . ID=CGI_10015428; scaffold1469 WUBlastX DNA_Zator 334210 334389 64 + . . scaffold1469 GLEAN mRNA 334853 335020 0.937512 - . ID=CGI_10015428; scaffold1469 WUBlastX DNA_Zator 334853 335020 51 + . . scaffold934 GLEAN mRNA 29099 29151 0.999341 - . ID=CGI_10015429; scaffold934 TRF Tandem_Repeat 29099 29151 61 + . . scaffold934 GLEAN mRNA 32890 33627 0.999341 - . ID=CGI_10015429; scaffold934 TRF Tandem_Repeat 32890 33627 931 + . . scaffold934 GLEAN mRNA 32890 33627 0.992208 + . ID=CGI_10015430; scaffold934 TRF Tandem_Repeat 32890 33627 931 + . . scaffold934 GLEAN mRNA 87234 87259 1 - . ID=CGI_10015436; scaffold934 TRF Tandem_Repeat 87234 87259 52 + . . scaffold934 GLEAN mRNA 110356 110536 1 - . ID=CGI_10015437; scaffold934 TRF Tandem_Repeat 110356 110536 182 + . . scaffold934 GLEAN mRNA 110535 110713 1 - . ID=CGI_10015437; scaffold934 TRF Tandem_Repeat 110535 110713 198 + . . scaffold934 GLEAN mRNA 110535 110713 1 - . ID=CGI_10015437; scaffold934 TRF Tandem_Repeat 110535 110713 119 + . . scaffold934 GLEAN mRNA 142608 143804 0.842937 + . ID=CGI_10015440; scaffold934 TRF Tandem_Repeat 142608 143804 1692 + . . scaffold934 GLEAN mRNA 167345 167388 0.544584 - . ID=CGI_10015442; scaffold934 TRF Tandem_Repeat 167345 167388 72 + . . scaffold934 GLEAN mRNA 170007 170135 0.544584 - . ID=CGI_10015442; scaffold934 TRF Tandem_Repeat 170007 170135 59 + . . scaffold934 GLEAN mRNA 178688 178731 0.544584 - . ID=CGI_10015442; scaffold934 TRF Tandem_Repeat 178688 178731 61 + . . scaffold934 GLEAN mRNA 245605 245904 0.975523 + . ID=CGI_10015445; scaffold934 WUBlastX LINE_L1 245605 245904 37 + . . scaffold934 GLEAN mRNA 245509 245913 0.975523 + . ID=CGI_10015445; scaffold934 WUBlastX LINE_L1-Tx1 245509 245913 33 + . . scaffold934 GLEAN mRNA 269313 269339 1 - . ID=CGI_10015446; scaffold934 TRF Tandem_Repeat 269313 269339 54 + . . scaffold934 GLEAN mRNA 267998 268144 1 - . ID=CGI_10015446; scaffold934 WUBlastX LINE_RTE-BovB 267998 268144 54 - . . scaffold934 GLEAN mRNA 266708 268096 1 - . ID=CGI_10015446; scaffold934 WUBlastX LINE_L1-Tx1 266708 268096 232 - . . scaffold934 GLEAN mRNA 264057 264536 1 - . ID=CGI_10015446; scaffold934 WUBlastX LTR_DIRS 264057 264536 60 + . . scaffold934 GLEAN mRNA 268913 269038 1 - . ID=CGI_10015446; scaffold934 WUBlastX LINE_RTE-BovB 268913 269038 23 - . . scaffold934 GLEAN mRNA 265466 265963 1 - . ID=CGI_10015446; scaffold934 WUBlastX LINE_L1-Tx1 265466 265963 54 - . . scaffold934 GLEAN mRNA 267071 268096 1 - . ID=CGI_10015446; scaffold934 WUBlastX LINE_L1-Tx1 267071 268096 374 - . . scaffold934 GLEAN mRNA 271497 271604 1 - . ID=CGI_10015446; scaffold934 WUBlastX RC_Helitron 271497 271604 45 + . . scaffold934 GLEAN mRNA 271640 271801 1 - . ID=CGI_10015446; scaffold934 WUBlastX RC_Helitron 271640 271801 71 + . . scaffold934 GLEAN mRNA 266073 266222 1 - . ID=CGI_10015446; scaffold934 WUBlastX LINE_L1-Tx1 266073 266222 44 - . . scaffold934 GLEAN mRNA 264246 264545 1 - . ID=CGI_10015446; scaffold934 WUBlastX LTR_DIRS 264246 264545 84 + . . scaffold934 GLEAN mRNA 267995 268120 1 - . ID=CGI_10015446; scaffold934 WUBlastX LINE_L1 267995 268120 64 - . . scaffold934 GLEAN mRNA 271455 271595 1 - . ID=CGI_10015446; scaffold934 WUBlastX RC_Helitron 271455 271595 36 + . . scaffold934 GLEAN mRNA 283590 283614 0.901828 + . ID=CGI_10015447; scaffold934 TRF Tandem_Repeat 283590 283614 50 + . . scaffold934 GLEAN mRNA 286981 287010 0.901828 + . ID=CGI_10015447; scaffold934 TRF Tandem_Repeat 286981 287010 60 + . . scaffold934 GLEAN mRNA 288770 288818 0.901828 + . ID=CGI_10015447; scaffold934 TRF Tandem_Repeat 288770 288818 98 + . . scaffold934 GLEAN mRNA 283726 285102 0.901828 + . ID=CGI_10015447; scaffold934 WUBlastX DNA_En-Spm 283726 285102 122 + . . scaffold934 GLEAN mRNA 284149 286428 0.901828 + . ID=CGI_10015447; scaffold934 WUBlastX DNA_En-Spm 284149 286428 1415 + . . scaffold934 GLEAN mRNA 291153 291353 0.901828 + . ID=CGI_10015447; scaffold934 WUBlastX DNA_Harbinger 291153 291353 76 - . . scaffold934 GLEAN mRNA 344276 344330 0.74773 + . ID=CGI_10015449; scaffold934 TRF Tandem_Repeat 344276 344330 110 + . . scaffold934 GLEAN mRNA 372284 372312 0.9978 - . ID=CGI_10015450; scaffold934 TRF Tandem_Repeat 372284 372312 58 + . . scaffold934 GLEAN mRNA 391436 391482 0.99982 + . ID=CGI_10015451; scaffold934 TRF Tandem_Repeat 391436 391482 57 + . . scaffold934 GLEAN mRNA 404320 404427 0.99982 + . ID=CGI_10015451; scaffold934 TRF Tandem_Repeat 404320 404427 69 + . . scaffold934 GLEAN mRNA 407907 408797 0.99982 + . ID=CGI_10015451; scaffold934 WUBlastX LTR_Ngaro 407907 408797 406 + . . scaffold934 GLEAN mRNA 407221 407817 0.99982 + . ID=CGI_10015451; scaffold934 WUBlastX LTR_Ngaro 407221 407817 118 + . . scaffold934 GLEAN mRNA 407857 408132 0.99982 + . ID=CGI_10015451; scaffold934 WUBlastX LTR_Ngaro 407857 408132 22 + . . scaffold934 GLEAN mRNA 408108 408797 0.99982 + . ID=CGI_10015451; scaffold934 WUBlastX LTR_Ngaro 408108 408797 415 + . . scaffold934 GLEAN mRNA 408776 408925 0.99982 + . ID=CGI_10015451; scaffold934 WUBlastX LTR_Ngaro 408776 408925 119 + . . scaffold934 GLEAN mRNA 407125 407646 0.99982 + . ID=CGI_10015451; scaffold934 WUBlastX LTR_Ngaro 407125 407646 232 + . . scaffold934 GLEAN mRNA 407005 407682 0.99982 + . ID=CGI_10015451; scaffold934 WUBlastX LTR_Ngaro 407005 407682 182 + . . scaffold934 GLEAN mRNA 408782 408958 0.99982 + . ID=CGI_10015451; scaffold934 WUBlastX LTR_Ngaro 408782 408958 88 + . . scaffold967 GLEAN mRNA 129714 129893 0.997345 + . ID=CGI_10015454; scaffold967 WUBlastX LTR_ERV1 129714 129893 24 - . . scaffold967 GLEAN mRNA 129906 130013 0.997345 + . ID=CGI_10015454; scaffold967 WUBlastX LTR_Copia 129906 130013 32 - . . scaffold967 GLEAN mRNA 144233 144238 0.999304 - . ID=CGI_10015456; scaffold967 WUBlastX LTR_Gypsy 144233 144466 89 - . . scaffold967 GLEAN mRNA 144020 144238 0.999304 - . ID=CGI_10015456; scaffold967 WUBlastX LTR_Gypsy 144020 144415 52 - . . scaffold967 GLEAN mRNA 217604 217653 0.931586 + . ID=CGI_10015461; scaffold967 TRF Tandem_Repeat 217604 217653 100 + . . scaffold967 GLEAN mRNA 229727 229754 0.931586 + . ID=CGI_10015461; scaffold967 TRF Tandem_Repeat 229727 229754 56 + . . scaffold967 GLEAN mRNA 229830 229863 0.931586 + . ID=CGI_10015461; scaffold967 TRF Tandem_Repeat 229830 229863 68 + . . scaffold967 GLEAN mRNA 231495 231710 0.931586 + . ID=CGI_10015461; scaffold967 WUBlastX DNA_hAT-Tip100 231495 231710 116 + . . scaffold967 GLEAN mRNA 231444 231710 0.931586 + . ID=CGI_10015461; scaffold967 WUBlastX DNA_hAT-Tip100 231444 231710 80 + . . scaffold967 GLEAN mRNA 212961 213006 0.931586 + . ID=CGI_10015461; scaffold967 TRF Tandem_Repeat 212961 213006 92 + . . scaffold967 GLEAN mRNA 331838 332017 1 + . ID=CGI_10015463; scaffold967 WUBlastX LINE_RTE-X 331838 332017 75 + . . scaffold967 GLEAN mRNA 331778 332032 1 + . ID=CGI_10015463; scaffold967 WUBlastX LINE_RTE-X 331778 332032 28 + . . scaffold967 GLEAN mRNA 340162 340207 1 + . ID=CGI_10015465; scaffold967 TRF Tandem_Repeat 340162 340207 92 + . . scaffold967 GLEAN mRNA 349633 349756 0.726888 + . ID=CGI_10015466; scaffold967 TRF Tandem_Repeat 349633 349756 76 + . . scaffold967 GLEAN mRNA 349708 349812 0.726888 + . ID=CGI_10015466; scaffold967 TRF Tandem_Repeat 349708 349812 63 + . . scaffold967 GLEAN mRNA 349640 349830 0.726888 + . ID=CGI_10015466; scaffold967 TRF Tandem_Repeat 349640 349830 154 + . . scaffold967 GLEAN mRNA 350444 350537 0.726888 + . ID=CGI_10015466; scaffold967 TRF Tandem_Repeat 350444 350537 125 + . . scaffold967 GLEAN mRNA 350584 350672 0.726888 + . ID=CGI_10015466; scaffold967 TRF Tandem_Repeat 350584 350672 137 + . . scaffold967 GLEAN mRNA 352207 352254 0.726888 + . ID=CGI_10015466; scaffold967 TRF Tandem_Repeat 352207 352254 78 + . . scaffold967 GLEAN mRNA 355631 355786 0.726888 + . ID=CGI_10015466; scaffold967 TRF Tandem_Repeat 355631 355786 125 + . . scaffold967 GLEAN mRNA 355941 356165 0.726888 + . ID=CGI_10015466; scaffold967 TRF Tandem_Repeat 355941 356165 351 + . . scaffold967 GLEAN mRNA 355631 355786 0.983588 - . ID=CGI_10015467; scaffold967 TRF Tandem_Repeat 355631 355786 125 + . . scaffold967 GLEAN mRNA 355941 356165 0.983588 - . ID=CGI_10015467; scaffold967 TRF Tandem_Repeat 355941 356165 351 + . . scaffold967 GLEAN mRNA 383114 383394 0.990903 - . ID=CGI_10015469; scaffold967 TRF Tandem_Repeat 383114 383394 438 + . . scaffold967 GLEAN mRNA 384692 385036 0.990903 - . ID=CGI_10015469; scaffold967 TRF Tandem_Repeat 384692 385036 496 + . . scaffold967 GLEAN mRNA 395920 396392 0.990903 - . ID=CGI_10015469; scaffold967 TRF Tandem_Repeat 395920 396392 820 + . . scaffold967 GLEAN mRNA 407313 407348 0.990903 - . ID=CGI_10015469; scaffold967 TRF Tandem_Repeat 407313 407348 72 + . . scaffold1214 GLEAN mRNA 2692 2736 1 + . ID=CGI_10015471; scaffold1214 TRF Tandem_Repeat 2692 2736 90 + . . scaffold1214 GLEAN mRNA 14094 14121 0.998287 - . ID=CGI_10015472; scaffold1214 TRF Tandem_Repeat 14094 14121 56 + . . scaffold1214 GLEAN mRNA 16720 16775 0.998287 - . ID=CGI_10015472; scaffold1214 TRF Tandem_Repeat 16720 16775 112 + . . scaffold1214 GLEAN mRNA 19137 19171 0.998287 - . ID=CGI_10015472; scaffold1214 TRF Tandem_Repeat 19137 19171 70 + . . scaffold1214 GLEAN mRNA 27460 27506 0.998287 - . ID=CGI_10015472; scaffold1214 TRF Tandem_Repeat 27460 27506 94 + . . scaffold1214 GLEAN mRNA 32794 32837 0.998287 - . ID=CGI_10015472; scaffold1214 TRF Tandem_Repeat 32794 32837 88 + . . scaffold1214 GLEAN mRNA 43450 43979 0.141491 - . ID=CGI_10015473; scaffold1214 TRF Tandem_Repeat 43450 43979 873 + . . scaffold1214 GLEAN mRNA 47947 48436 0.141491 - . ID=CGI_10015473; scaffold1214 TRF Tandem_Repeat 47947 48436 753 + . . scaffold1214 GLEAN mRNA 56777 56832 0.141491 - . ID=CGI_10015473; scaffold1214 TRF Tandem_Repeat 56777 56832 112 + . . scaffold1214 GLEAN mRNA 62443 62482 0.141491 - . ID=CGI_10015473; scaffold1214 TRF Tandem_Repeat 62443 62482 73 + . . scaffold1214 GLEAN mRNA 100423 100468 0.999669 - . ID=CGI_10015474; scaffold1214 TRF Tandem_Repeat 100423 100468 83 + . . scaffold1214 GLEAN mRNA 131985 132731 0.642994 + . ID=CGI_10015477; scaffold1214 TRF Tandem_Repeat 131985 132731 963 + . . scaffold1214 GLEAN mRNA 134421 135365 0.642994 + . ID=CGI_10015477; scaffold1214 WUBlastX DNA_TcMar-m44 134421 135365 588 - . . scaffold1214 GLEAN mRNA 244986 245023 0.274712 + . ID=CGI_10015480; scaffold1214 TRF Tandem_Repeat 244986 245023 58 + . . scaffold1214 GLEAN mRNA 243224 243550 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LINE_L2 243224 243550 28 + . . scaffold1214 GLEAN mRNA 244235 244675 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LINE_RTE-X 244235 244675 54 + . . scaffold1214 GLEAN mRNA 243642 243695 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LINE_I 243642 243695 23 + . . scaffold1214 GLEAN mRNA 243849 244232 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LINE_RTE-X 243849 244232 56 + . . scaffold1214 GLEAN mRNA 244695 244766 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LINE_RTE-X 244695 244766 33 + . . scaffold1214 GLEAN mRNA 243275 243658 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LINE_RTE-X 243275 243658 116 + . . scaffold1214 GLEAN mRNA 244713 244787 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LINE_RTE-X 244713 244787 27 + . . scaffold1214 GLEAN mRNA 247854 247945 0.274712 + . ID=CGI_10015480; scaffold1214 TRF Tandem_Repeat 247854 247945 87 + . . scaffold1214 GLEAN mRNA 251921 252478 0.274712 + . ID=CGI_10015480; scaffold1214 TRF Tandem_Repeat 251921 252478 697 + . . scaffold1214 GLEAN mRNA 250444 250734 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LTR_Ngaro 250444 250734 206 - . . scaffold1214 GLEAN mRNA 251217 251711 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LTR_Ngaro 251217 251711 26 - . . scaffold1214 GLEAN mRNA 249910 250071 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LTR_Ngaro 249910 250071 40 - . . scaffold1214 GLEAN mRNA 251394 251768 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LTR_Ngaro 251394 251768 134 - . . scaffold1214 GLEAN mRNA 250023 250439 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LTR_Ngaro 250023 250439 235 - . . scaffold1214 GLEAN mRNA 250760 251122 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LTR_Ngaro 250760 251122 162 - . . scaffold1214 GLEAN mRNA 247105 247500 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LINE_CR1 247105 247500 60 - . . scaffold1214 GLEAN mRNA 274918 275120 1 - . ID=CGI_10015482; scaffold1214 TRF Tandem_Repeat 274918 275120 140 + . . scaffold1214 GLEAN mRNA 274974 275144 1 - . ID=CGI_10015482; scaffold1214 TRF Tandem_Repeat 274974 275144 150 + . . scaffold1214 GLEAN mRNA 275121 275267 1 - . ID=CGI_10015482; scaffold1214 TRF Tandem_Repeat 275121 275267 123 + . . scaffold1214 GLEAN mRNA 293756 293813 0.998661 - . ID=CGI_10015483; scaffold1214 TRF Tandem_Repeat 293756 293813 73 + . . scaffold1214 GLEAN mRNA 293756 293807 0.998661 - . ID=CGI_10015483; scaffold1214 TRF Tandem_Repeat 293756 293807 86 + . . scaffold1214 GLEAN mRNA 305549 305588 0.998661 - . ID=CGI_10015483; scaffold1214 TRF Tandem_Repeat 305549 305588 80 + . . scaffold1214 GLEAN mRNA 371117 371168 1 - . ID=CGI_10015488; scaffold1214 TRF Tandem_Repeat 371117 371168 104 + . . scaffold1214 GLEAN mRNA 401184 401213 0.999027 + . ID=CGI_10015490; scaffold1214 TRF Tandem_Repeat 401184 401213 51 + . . scaffold705 GLEAN mRNA 28925 28961 0.999676 + . ID=CGI_10015494; scaffold705 TRF Tandem_Repeat 28925 28961 74 + . . scaffold705 GLEAN mRNA 36276 36330 1 - . ID=CGI_10015495; scaffold705 TRF Tandem_Repeat 36276 36330 110 + . . scaffold705 GLEAN mRNA 39715 39790 1 - . ID=CGI_10015495; scaffold705 TRF Tandem_Repeat 39715 39790 134 + . . scaffold705 GLEAN mRNA 59855 60289 0.408277 - . ID=CGI_10015497; scaffold705 WUBlastX LINE_Penelope 59855 60289 120 + . . scaffold705 GLEAN mRNA 56843 56971 0.408277 - . ID=CGI_10015497; scaffold705 WUBlastX LINE_RTE-BovB 56843 56971 28 + . . scaffold705 GLEAN mRNA 59260 59949 0.408277 - . ID=CGI_10015497; scaffold705 WUBlastX LINE_Penelope 59260 59949 373 + . . scaffold705 GLEAN mRNA 76275 76350 0.408277 - . ID=CGI_10015497; scaffold705 TRF Tandem_Repeat 76275 76350 71 + . . scaffold705 GLEAN mRNA 76277 76370 0.408277 - . ID=CGI_10015497; scaffold705 TRF Tandem_Repeat 76277 76370 61 + . . scaffold705 GLEAN mRNA 80754 81036 0.999928 - . ID=CGI_10015498; scaffold705 TRF Tandem_Repeat 80754 81036 397 + . . scaffold705 GLEAN mRNA 94049 94279 0.711609 + . ID=CGI_10015500; scaffold705 WUBlastX DNA_TcMar-Tc1 94049 94279 138 - . . scaffold705 GLEAN mRNA 94294 94770 0.711609 + . ID=CGI_10015500; scaffold705 WUBlastX DNA_TcMar-Tc1 94294 94770 241 - . . scaffold705 GLEAN mRNA 127641 127687 0.766351 + . ID=CGI_10015501; scaffold705 TRF Tandem_Repeat 127641 127687 51 + . . scaffold705 GLEAN mRNA 142023 142084 0.766351 + . ID=CGI_10015501; scaffold705 TRF Tandem_Repeat 142023 142084 83 + . . scaffold705 GLEAN mRNA 142015 142074 0.766351 + . ID=CGI_10015501; scaffold705 TRF Tandem_Repeat 142015 142074 97 + . . scaffold705 GLEAN mRNA 204657 205027 1 - . ID=CGI_10015506; scaffold705 TRF Tandem_Repeat 204657 205027 534 + . . scaffold705 GLEAN mRNA 215186 215217 0.992492 - . ID=CGI_10015507; scaffold705 TRF Tandem_Repeat 215186 215217 64 + . . scaffold705 GLEAN mRNA 215622 215796 0.992492 - . ID=CGI_10015507; scaffold705 TRF Tandem_Repeat 215622 215796 118 + . . scaffold705 GLEAN mRNA 219763 220099 0.992492 - . ID=CGI_10015507; scaffold705 TRF Tandem_Repeat 219763 220099 350 + . . scaffold705 GLEAN mRNA 219741 220099 0.992492 - . ID=CGI_10015507; scaffold705 TRF Tandem_Repeat 219741 220099 438 + . . scaffold705 GLEAN mRNA 220770 220966 0.992492 - . ID=CGI_10015507; scaffold705 TRF Tandem_Repeat 220770 220966 252 + . . scaffold705 GLEAN mRNA 220801 220989 0.992492 - . ID=CGI_10015507; scaffold705 TRF Tandem_Repeat 220801 220989 168 + . . scaffold705 GLEAN mRNA 224332 224413 0.992492 - . ID=CGI_10015507; scaffold705 TRF Tandem_Repeat 224332 224413 110 + . . scaffold705 GLEAN mRNA 270578 271276 0.501941 + . ID=CGI_10015510; scaffold705 WUBlastX DNA_IS4EU 270578 271276 210 - . . scaffold705 GLEAN mRNA 266827 267594 0.501941 + . ID=CGI_10015510; scaffold705 WUBlastX LINE_RTE-X 266827 267594 124 + . . scaffold705 GLEAN mRNA 270578 271276 1 - . ID=CGI_10015511; scaffold705 WUBlastX DNA_IS4EU 270578 271276 210 - . . scaffold705 GLEAN mRNA 317815 317861 0.810949 - . ID=CGI_10015515; scaffold705 TRF Tandem_Repeat 317815 317861 94 + . . scaffold705 GLEAN mRNA 318745 318785 0.810949 - . ID=CGI_10015515; scaffold705 WUBlastX LTR_Gypsy 318745 318960 101 - . . scaffold705 GLEAN mRNA 318781 318785 0.810949 - . ID=CGI_10015515; scaffold705 WUBlastX LTR_Gypsy 318781 318960 110 - . . scaffold705 GLEAN mRNA 327478 327894 0.318359 + . ID=CGI_10015516; scaffold705 WUBlastX DNA_IS4EU 327478 327894 71 + . . scaffold705 GLEAN mRNA 327127 327897 0.318359 + . ID=CGI_10015516; scaffold705 WUBlastX DNA_IS4EU 327127 327897 31 + . . scaffold705 GLEAN mRNA 343732 343781 0.495675 + . ID=CGI_10015517; scaffold705 TRF Tandem_Repeat 343732 343781 100 + . . scaffold705 GLEAN mRNA 345612 345767 0.495675 + . ID=CGI_10015517; scaffold705 WUBlastX LINE_Penelope 345612 345767 52 - . . scaffold705 GLEAN mRNA 344995 345267 0.495675 + . ID=CGI_10015517; scaffold705 WUBlastX LINE_Penelope 344995 345267 56 - . . scaffold705 GLEAN mRNA 344892 344984 0.495675 + . ID=CGI_10015517; scaffold705 WUBlastX LINE_Penelope 344892 344984 27 - . . scaffold705 GLEAN mRNA 344889 344951 0.495675 + . ID=CGI_10015517; scaffold705 WUBlastX LINE_Penelope 344889 344951 34 - . . scaffold705 GLEAN mRNA 345474 345770 0.495675 + . ID=CGI_10015517; scaffold705 WUBlastX LINE_Penelope 345474 345770 29 - . . scaffold705 GLEAN mRNA 406672 406959 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX DNA_IS4EU 406672 406959 27 - . . scaffold705 GLEAN mRNA 404780 405907 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX DNA_Kolobok-IS4 404780 405907 551 - . . scaffold705 GLEAN mRNA 406639 406899 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX DNA_Kolobok-IS4 406639 406899 46 - . . scaffold705 GLEAN mRNA 401559 402071 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX DNA_Kolobok-IS4 401559 402071 78 + . . scaffold705 GLEAN mRNA 403096 403779 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX DNA_IS4EU 403096 403779 164 + . . scaffold705 GLEAN mRNA 401709 402068 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX DNA_IS4EU 401709 402068 95 + . . scaffold705 GLEAN mRNA 402700 403773 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX DNA_Kolobok-IS4 402700 403773 133 + . . scaffold705 GLEAN mRNA 407098 409239 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX LINE_L1-Tx1 407098 409239 1092 + . . scaffold705 GLEAN mRNA 410727 410762 0.998279 - . ID=CGI_10015520; scaffold705 TRF Tandem_Repeat 410727 410762 72 + . . scaffold705 GLEAN mRNA 414740 415051 0.998279 - . ID=CGI_10015520; scaffold705 TRF Tandem_Repeat 414740 415051 419 + . . scaffold705 GLEAN mRNA 418316 418376 0.998279 - . ID=CGI_10015520; scaffold705 TRF Tandem_Repeat 418316 418376 95 + . . scaffold705 GLEAN mRNA 409791 410612 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX LINE_L1-Tx1 409791 410612 85 + . . scaffold11 GLEAN mRNA 61413 61685 0.65426 - . ID=CGI_10015522; scaffold11 WUBlastX LTR_Gypsy-Cigr 61413 61685 186 - . . scaffold11 GLEAN mRNA 61843 62247 0.65426 - . ID=CGI_10015522; scaffold11 WUBlastX LTR_Gypsy 61843 62247 73 - . . scaffold11 GLEAN mRNA 62876 63289 0.65426 - . ID=CGI_10015522; scaffold11 WUBlastX LTR_Gypsy 62876 63289 87 - . . scaffold11 GLEAN mRNA 61353 61673 0.65426 - . ID=CGI_10015522; scaffold11 WUBlastX LTR_Gypsy 61353 61673 131 - . . scaffold11 GLEAN mRNA 61413 61736 0.65426 - . ID=CGI_10015522; scaffold11 WUBlastX LTR_Gypsy 61413 61736 167 - . . scaffold11 GLEAN mRNA 61407 61811 0.65426 - . ID=CGI_10015522; scaffold11 WUBlastX LTR_Gypsy 61407 61811 78 - . . scaffold11 GLEAN mRNA 121777 121967 0.839616 + . ID=CGI_10015525; scaffold11 TRF Tandem_Repeat 121777 121967 164 + . . scaffold11 GLEAN mRNA 139476 139531 0.229634 - . ID=CGI_10015527; scaffold11 TRF Tandem_Repeat 139476 139531 66 + . . scaffold11 GLEAN mRNA 269027 269076 0.975937 - . ID=CGI_10015534; scaffold11 TRF Tandem_Repeat 269027 269076 100 + . . scaffold11 GLEAN mRNA 270763 270816 0.975937 - . ID=CGI_10015534; scaffold11 TRF Tandem_Repeat 270763 270816 56 + . . scaffold11 GLEAN mRNA 272428 273055 0.975937 - . ID=CGI_10015534; scaffold11 TRF Tandem_Repeat 272428 273055 353 + . . scaffold11 GLEAN mRNA 307287 307328 0.734532 - . ID=CGI_10015535; scaffold11 TRF Tandem_Repeat 307287 307328 66 + . . scaffold11 GLEAN mRNA 310670 310734 0.734532 - . ID=CGI_10015535; scaffold11 TRF Tandem_Repeat 310670 310734 130 + . . scaffold11 GLEAN mRNA 360603 360930 0.999676 - . ID=CGI_10015539; scaffold11 TRF Tandem_Repeat 360603 360930 503 + . . scaffold11 GLEAN mRNA 363182 363777 0.999676 - . ID=CGI_10015539; scaffold11 TRF Tandem_Repeat 363182 363777 946 + . . scaffold11 GLEAN mRNA 368663 369047 0.999676 - . ID=CGI_10015539; scaffold11 TRF Tandem_Repeat 368663 369047 452 + . . scaffold11 GLEAN mRNA 377038 377091 0.988899 + . ID=CGI_10015540; scaffold11 TRF Tandem_Repeat 377038 377091 65 + . . scaffold11 GLEAN mRNA 377038 377094 0.988899 + . ID=CGI_10015540; scaffold11 TRF Tandem_Repeat 377038 377094 80 + . . scaffold11 GLEAN mRNA 419958 421477 0.715377 - . ID=CGI_10015542; scaffold11 TRF Tandem_Repeat 419958 421477 1890 + . . scaffold1901 GLEAN mRNA 58079 58121 0.99891 - . ID=CGI_10015545; scaffold1901 TRF Tandem_Repeat 58079 58121 54 + . . scaffold1901 GLEAN mRNA 78181 78217 0.807176 - . ID=CGI_10015546; scaffold1901 TRF Tandem_Repeat 78181 78217 74 + . . scaffold1901 GLEAN mRNA 80798 80842 0.807176 - . ID=CGI_10015546; scaffold1901 TRF Tandem_Repeat 80798 80842 90 + . . scaffold1901 GLEAN mRNA 82736 82771 0.807176 - . ID=CGI_10015546; scaffold1901 TRF Tandem_Repeat 82736 82771 63 + . . scaffold1901 GLEAN mRNA 83499 83540 0.807176 - . ID=CGI_10015546; scaffold1901 TRF Tandem_Repeat 83499 83540 75 + . . scaffold1901 GLEAN mRNA 89760 89805 0.807176 - . ID=CGI_10015546; scaffold1901 TRF Tandem_Repeat 89760 89805 92 + . . scaffold1901 GLEAN mRNA 189291 189372 1 + . ID=CGI_10015550; scaffold1901 TRF Tandem_Repeat 189291 189372 155 + . . scaffold1901 GLEAN mRNA 215401 215437 0.999664 - . ID=CGI_10015551; scaffold1901 TRF Tandem_Repeat 215401 215437 74 + . . scaffold1901 GLEAN mRNA 272930 272961 0.808709 + . ID=CGI_10015553; scaffold1901 TRF Tandem_Repeat 272930 272961 64 + . . scaffold1901 GLEAN mRNA 330686 330721 0.992515 + . ID=CGI_10015556; scaffold1901 TRF Tandem_Repeat 330686 330721 72 + . . scaffold1901 GLEAN mRNA 372204 372480 0.0368766 - . ID=CGI_10015562; scaffold1901 TRF Tandem_Repeat 372204 372480 337 + . . scaffold1901 GLEAN mRNA 372204 372480 0.0368766 - . ID=CGI_10015562; scaffold1901 TRF Tandem_Repeat 372204 372480 385 + . . scaffold1901 GLEAN mRNA 388883 389038 0.0368766 - . ID=CGI_10015562; scaffold1901 TRF Tandem_Repeat 388883 389038 276 + . . scaffold1901 GLEAN mRNA 372204 372480 0.99958 + . ID=CGI_10015563; scaffold1901 TRF Tandem_Repeat 372204 372480 337 + . . scaffold1901 GLEAN mRNA 372204 372480 0.99958 + . ID=CGI_10015563; scaffold1901 TRF Tandem_Repeat 372204 372480 385 + . . scaffold1901 GLEAN mRNA 388883 389038 0.999256 + . ID=CGI_10015564; scaffold1901 TRF Tandem_Repeat 388883 389038 276 + . . scaffold1901 GLEAN mRNA 414248 414281 0.479201 + . ID=CGI_10015566; scaffold1901 TRF Tandem_Repeat 414248 414281 59 + . . scaffold1901 GLEAN mRNA 415430 415477 0.479201 + . ID=CGI_10015566; scaffold1901 TRF Tandem_Repeat 415430 415477 73 + . . scaffold44006 GLEAN mRNA 15783 16080 0.999343 - . ID=CGI_10015569; scaffold44006 TRF Tandem_Repeat 15783 16080 497 + . . scaffold44006 GLEAN mRNA 19879 19920 0.999343 - . ID=CGI_10015569; scaffold44006 TRF Tandem_Repeat 19879 19920 84 + . . scaffold44006 GLEAN mRNA 17209 17301 0.999343 - . ID=CGI_10015569; scaffold44006 WUBlastX LINE_CR1 17209 17301 80 + . . scaffold44006 GLEAN mRNA 52767 52806 0.999998 + . ID=CGI_10015571; scaffold44006 TRF Tandem_Repeat 52767 52806 80 + . . scaffold44006 GLEAN mRNA 59738 59787 0.999998 + . ID=CGI_10015571; scaffold44006 TRF Tandem_Repeat 59738 59787 100 + . . scaffold44006 GLEAN mRNA 89267 89324 1 - . ID=CGI_10015573; scaffold44006 TRF Tandem_Repeat 89267 89324 107 + . . scaffold44006 GLEAN mRNA 106225 106276 0.949709 + . ID=CGI_10015574; scaffold44006 TRF Tandem_Repeat 106225 106276 50 + . . scaffold44006 GLEAN mRNA 106284 107080 0.949709 + . ID=CGI_10015574; scaffold44006 TRF Tandem_Repeat 106284 107080 1106 + . . scaffold44006 GLEAN mRNA 108680 110763 0.949709 + . ID=CGI_10015574; scaffold44006 TRF Tandem_Repeat 108680 110763 1670 + . . scaffold44006 GLEAN mRNA 108680 110763 0.949709 + . ID=CGI_10015574; scaffold44006 TRF Tandem_Repeat 108680 110763 2183 + . . scaffold44006 GLEAN mRNA 108680 110763 0.949709 + . ID=CGI_10015574; scaffold44006 TRF Tandem_Repeat 108680 110763 2183 + . . scaffold44006 GLEAN mRNA 118684 118875 0.949709 + . ID=CGI_10015574; scaffold44006 TRF Tandem_Repeat 118684 118875 368 + . . scaffold44006 GLEAN mRNA 118681 119174 0.949709 + . ID=CGI_10015574; scaffold44006 TRF Tandem_Repeat 118681 119174 158 + . . scaffold44006 GLEAN mRNA 117539 117586 0.949709 + . ID=CGI_10015574; scaffold44006 WUBlastX DNA_En-Spm 117539 117586 20 + . . scaffold44006 GLEAN mRNA 166070 166116 0.999976 - . ID=CGI_10015578; scaffold44006 TRF Tandem_Repeat 166070 166116 94 + . . scaffold44006 GLEAN mRNA 169839 169903 0.999976 - . ID=CGI_10015578; scaffold44006 TRF Tandem_Repeat 169839 169903 94 + . . scaffold44006 GLEAN mRNA 221195 221287 1 - . ID=CGI_10015579; scaffold44006 TRF Tandem_Repeat 221195 221287 105 + . . scaffold44006 GLEAN mRNA 255561 255959 0.99731 - . ID=CGI_10015581; scaffold44006 WUBlastX DNA_TcMar-Tc1 255561 255959 68 + . . scaffold44006 GLEAN mRNA 255639 255953 0.99731 - . ID=CGI_10015581; scaffold44006 WUBlastX DNA_TcMar-Tc1 255639 255953 70 + . . scaffold44006 GLEAN mRNA 311591 311917 0.794504 + . ID=CGI_10015583; scaffold44006 TRF Tandem_Repeat 311591 311917 385 + . . scaffold44006 GLEAN mRNA 311591 311917 0.794504 + . ID=CGI_10015583; scaffold44006 TRF Tandem_Repeat 311591 311917 424 + . . scaffold44006 GLEAN mRNA 311260 311594 0.794504 + . ID=CGI_10015583; scaffold44006 TRF Tandem_Repeat 311260 311594 313 + . . scaffold44006 GLEAN mRNA 311260 311594 0.794504 + . ID=CGI_10015583; scaffold44006 TRF Tandem_Repeat 311260 311594 318 + . . scaffold44006 GLEAN mRNA 374188 374240 0.999849 - . ID=CGI_10015586; scaffold44006 TRF Tandem_Repeat 374188 374240 106 + . . scaffold44006 GLEAN mRNA 374734 374789 0.999849 - . ID=CGI_10015586; scaffold44006 TRF Tandem_Repeat 374734 374789 85 + . . scaffold44006 GLEAN mRNA 374823 375614 0.999849 - . ID=CGI_10015586; scaffold44006 TRF Tandem_Repeat 374823 375614 1196 + . . scaffold44006 GLEAN mRNA 417471 417727 0.681261 + . ID=CGI_10015592; scaffold44006 TRF Tandem_Repeat 417471 417727 317 + . . scaffold44006 GLEAN mRNA 430338 430568 0.999395 - . ID=CGI_10015593; scaffold44006 WUBlastX LINE_CR1-L2 430338 430568 96 + . . scaffold44006 GLEAN mRNA 430338 430745 0.999395 - . ID=CGI_10015593; scaffold44006 WUBlastX LINE_CR1-L2 430338 430745 42 + . . scaffold1711 GLEAN mRNA 19560 19591 0.598612 + . ID=CGI_10015595; scaffold1711 TRF Tandem_Repeat 19560 19591 64 + . . scaffold1711 GLEAN mRNA 23210 23452 0.598612 + . ID=CGI_10015595; scaffold1711 WUBlastX LINE_RTE-X 23210 23452 55 + . . scaffold1711 GLEAN mRNA 23183 23524 0.598612 + . ID=CGI_10015595; scaffold1711 WUBlastX LINE_RTE-X 23183 23524 32 + . . scaffold1711 GLEAN mRNA 46825 47166 0.279157 - . ID=CGI_10015598; scaffold1711 TRF Tandem_Repeat 46825 47166 549 + . . scaffold1711 GLEAN mRNA 47844 48158 0.279157 - . ID=CGI_10015598; scaffold1711 TRF Tandem_Repeat 47844 48158 531 + . . scaffold1711 GLEAN mRNA 69855 69976 0.511931 + . ID=CGI_10015600; scaffold1711 TRF Tandem_Repeat 69855 69976 167 + . . scaffold1711 GLEAN mRNA 86580 86671 0.511931 + . ID=CGI_10015600; scaffold1711 TRF Tandem_Repeat 86580 86671 94 + . . scaffold1711 GLEAN mRNA 88169 88274 0.511931 + . ID=CGI_10015600; scaffold1711 TRF Tandem_Repeat 88169 88274 92 + . . scaffold1711 GLEAN mRNA 88167 88266 0.511931 + . ID=CGI_10015600; scaffold1711 TRF Tandem_Repeat 88167 88266 134 + . . scaffold1711 GLEAN mRNA 289592 290387 0.999676 + . ID=CGI_10015607; scaffold1711 TRF Tandem_Repeat 289592 290387 1290 + . . scaffold1711 GLEAN mRNA 300345 300622 1 + . ID=CGI_10015608; scaffold1711 TRF Tandem_Repeat 300345 300622 227 + . . scaffold1711 GLEAN mRNA 314203 314234 0.999978 - . ID=CGI_10015609; scaffold1711 TRF Tandem_Repeat 314203 314234 64 + . . scaffold1711 GLEAN mRNA 318155 318282 0.999978 - . ID=CGI_10015609; scaffold1711 TRF Tandem_Repeat 318155 318282 89 + . . scaffold1711 GLEAN mRNA 318329 318675 0.999978 - . ID=CGI_10015609; scaffold1711 TRF Tandem_Repeat 318329 318675 181 + . . scaffold1711 GLEAN mRNA 318436 318709 0.999978 - . ID=CGI_10015609; scaffold1711 TRF Tandem_Repeat 318436 318709 126 + . . scaffold1711 GLEAN mRNA 339141 339308 0.69447 + . ID=CGI_10015611; scaffold1711 WUBlastX LTR_Gypsy 338649 339308 34 + . . scaffold1711 GLEAN mRNA 339141 339170 0.69447 + . ID=CGI_10015611; scaffold1711 WUBlastX LTR_Gypsy 338649 339170 70 + . . scaffold1711 GLEAN mRNA 342220 342450 0.999555 + . ID=CGI_10015612; scaffold1711 WUBlastX LTR_Gypsy-Cigr 342220 342450 85 - . . scaffold1711 GLEAN mRNA 344393 344520 0.999555 + . ID=CGI_10015612; scaffold1711 TRF Tandem_Repeat 344393 344520 127 + . . scaffold1711 GLEAN mRNA 346840 346986 0.999555 + . ID=CGI_10015612; scaffold1711 WUBlastX LINE_L1 346840 346986 53 + . . scaffold1711 GLEAN mRNA 388711 388854 0.993176 + . ID=CGI_10015613; scaffold1711 TRF Tandem_Repeat 388711 388854 243 + . . scaffold963 GLEAN mRNA 64337 64382 0.999999 - . ID=CGI_10015615; scaffold963 TRF Tandem_Repeat 64337 64382 92 + . . scaffold963 GLEAN mRNA 63283 63657 0.999999 - . ID=CGI_10015615; scaffold963 WUBlastX LINE_RTE-X 63283 63657 21 - . . scaffold963 GLEAN mRNA 63448 63657 0.999999 - . ID=CGI_10015615; scaffold963 WUBlastX LINE_RTE-X 63448 63657 100 - . . scaffold963 GLEAN mRNA 63343 63657 0.999999 - . ID=CGI_10015615; scaffold963 WUBlastX LINE_RTE-X 63343 63657 85 - . . scaffold963 GLEAN mRNA 101409 101735 1 + . ID=CGI_10015619; scaffold963 WUBlastX LINE_RTE-BovB 101409 101735 79 - . . scaffold963 GLEAN mRNA 244703 246042 0.994612 + . ID=CGI_10015623; scaffold963 TRF Tandem_Repeat 244703 246042 1280 + . . scaffold1726 GLEAN mRNA 40695 40728 0.937814 + . ID=CGI_10015630; scaffold1726 TRF Tandem_Repeat 40695 40728 68 + . . scaffold1726 GLEAN mRNA 42252 42309 0.937814 + . ID=CGI_10015630; scaffold1726 TRF Tandem_Repeat 42252 42309 116 + . . scaffold1726 GLEAN mRNA 92058 92457 0.998226 + . ID=CGI_10015632; scaffold1726 TRF Tandem_Repeat 92058 92457 543 + . . scaffold1726 GLEAN mRNA 93645 93674 0.998226 + . ID=CGI_10015632; scaffold1726 TRF Tandem_Repeat 93645 93674 60 + . . scaffold1726 GLEAN mRNA 100796 100846 0.877297 - . ID=CGI_10015633; scaffold1726 TRF Tandem_Repeat 100796 100846 54 + . . scaffold1726 GLEAN mRNA 101578 101615 0.877297 - . ID=CGI_10015633; scaffold1726 TRF Tandem_Repeat 101578 101615 76 + . . scaffold1726 GLEAN mRNA 103131 103184 0.877297 - . ID=CGI_10015633; scaffold1726 TRF Tandem_Repeat 103131 103184 108 + . . scaffold1726 GLEAN mRNA 105266 105350 0.877297 - . ID=CGI_10015633; scaffold1726 TRF Tandem_Repeat 105266 105350 170 + . . scaffold1726 GLEAN mRNA 106295 106329 0.877297 - . ID=CGI_10015633; scaffold1726 TRF Tandem_Repeat 106295 106329 70 + . . scaffold1726 GLEAN mRNA 117040 117084 0.999612 - . ID=CGI_10015634; scaffold1726 TRF Tandem_Repeat 117040 117084 90 + . . scaffold1726 GLEAN mRNA 122306 122445 0.999612 - . ID=CGI_10015634; scaffold1726 TRF Tandem_Repeat 122306 122445 105 + . . scaffold1726 GLEAN mRNA 129820 129857 0.873057 + . ID=CGI_10015635; scaffold1726 TRF Tandem_Repeat 129820 129857 76 + . . scaffold1726 GLEAN mRNA 145620 145652 0.873057 + . ID=CGI_10015635; scaffold1726 TRF Tandem_Repeat 145620 145652 57 + . . scaffold1726 GLEAN mRNA 153046 153088 0.873057 + . ID=CGI_10015635; scaffold1726 TRF Tandem_Repeat 153046 153088 86 + . . scaffold1726 GLEAN mRNA 154506 154549 0.873057 + . ID=CGI_10015635; scaffold1726 TRF Tandem_Repeat 154506 154549 79 + . . scaffold1726 GLEAN mRNA 166265 166826 0.998535 + . ID=CGI_10015636; scaffold1726 TRF Tandem_Repeat 166265 166826 234 + . . scaffold1726 GLEAN mRNA 166610 166808 0.998535 + . ID=CGI_10015636; scaffold1726 TRF Tandem_Repeat 166610 166808 143 + . . scaffold1726 GLEAN mRNA 167210 167460 0.998535 + . ID=CGI_10015636; scaffold1726 TRF Tandem_Repeat 167210 167460 389 + . . scaffold1726 GLEAN mRNA 172096 172150 0.998535 + . ID=CGI_10015636; scaffold1726 TRF Tandem_Repeat 172096 172150 101 + . . scaffold1726 GLEAN mRNA 180053 180078 0.998535 + . ID=CGI_10015636; scaffold1726 TRF Tandem_Repeat 180053 180078 52 + . . scaffold1726 GLEAN mRNA 172768 172944 0.998535 + . ID=CGI_10015636; scaffold1726 WUBlastX LINE_RTE-BovB 172768 172944 91 - . . scaffold1726 GLEAN mRNA 180415 180440 0.998535 + . ID=CGI_10015636; scaffold1726 TRF Tandem_Repeat 180415 180440 52 + . . scaffold1726 GLEAN mRNA 282760 283231 0.426779 - . ID=CGI_10015637; scaffold1726 TRF Tandem_Repeat 282760 283231 304 + . . scaffold1726 GLEAN mRNA 282663 283252 0.426779 - . ID=CGI_10015637; scaffold1726 TRF Tandem_Repeat 282663 283252 181 + . . scaffold1726 GLEAN mRNA 283051 283205 0.426779 - . ID=CGI_10015637; scaffold1726 TRF Tandem_Repeat 283051 283205 96 + . . scaffold1726 GLEAN mRNA 282681 283241 0.426779 - . ID=CGI_10015637; scaffold1726 TRF Tandem_Repeat 282681 283241 583 + . . scaffold1726 GLEAN mRNA 292401 292889 0.426779 - . ID=CGI_10015637; scaffold1726 WUBlastX LTR_Gypsy 292401 292889 56 - . . scaffold1726 GLEAN mRNA 292452 292994 0.426779 - . ID=CGI_10015637; scaffold1726 WUBlastX LTR_Gypsy 292452 292994 52 - . . scaffold1726 GLEAN mRNA 315253 315448 0.879774 - . ID=CGI_10015638; scaffold1726 TRF Tandem_Repeat 315253 315448 286 + . . scaffold1726 GLEAN mRNA 316056 316205 0.879774 - . ID=CGI_10015638; scaffold1726 TRF Tandem_Repeat 316056 316205 151 + . . scaffold1726 GLEAN mRNA 325887 325921 0.938382 - . ID=CGI_10015639; scaffold1726 TRF Tandem_Repeat 325887 325921 52 + . . scaffold1726 GLEAN mRNA 337140 337809 1 - . ID=CGI_10015640; scaffold1726 TRF Tandem_Repeat 337140 337809 1205 + . . scaffold1726 GLEAN mRNA 354042 354203 0.529003 - . ID=CGI_10015641; scaffold1726 TRF Tandem_Repeat 354042 354203 288 + . . scaffold1726 GLEAN mRNA 349452 349547 0.529003 - . ID=CGI_10015641; scaffold1726 WUBlastX DNA_P 349452 349547 31 - . . scaffold1726 GLEAN mRNA 348171 348341 0.529003 - . ID=CGI_10015641; scaffold1726 WUBlastX LTR_Gypsy 348171 348341 35 - . . scaffold1726 GLEAN mRNA 370670 370708 1 + . ID=CGI_10015644; scaffold1726 TRF Tandem_Repeat 370670 370708 78 + . . scaffold816 GLEAN mRNA 184462 184534 0.224935 + . ID=CGI_10015654; scaffold816 TRF Tandem_Repeat 184462 184534 146 + . . scaffold816 GLEAN mRNA 229897 230046 0.358147 + . ID=CGI_10015655; scaffold816 WUBlastX DNA_TcMar-Tc1 229897 230046 65 - . . scaffold816 GLEAN mRNA 229488 229742 0.358147 + . ID=CGI_10015655; scaffold816 WUBlastX DNA_TcMar-Tc1 229488 229742 49 - . . scaffold816 GLEAN mRNA 229476 229697 0.358147 + . ID=CGI_10015655; scaffold816 WUBlastX DNA_TcMar-Tc1 229476 229697 66 - . . scaffold816 GLEAN mRNA 229846 230040 0.358147 + . ID=CGI_10015655; scaffold816 WUBlastX DNA_TcMar-Tc1 229846 230040 54 - . . scaffold1372 GLEAN mRNA 52500 52583 0.635284 + . ID=CGI_10015661; scaffold1372 TRF Tandem_Repeat 52500 52583 168 + . . scaffold1372 GLEAN mRNA 53903 53937 0.635284 + . ID=CGI_10015661; scaffold1372 TRF Tandem_Repeat 53903 53937 52 + . . scaffold1372 GLEAN mRNA 110419 110443 0.255831 - . ID=CGI_10015663; scaffold1372 TRF Tandem_Repeat 110419 110443 50 + . . scaffold1372 GLEAN mRNA 109453 109830 0.255831 - . ID=CGI_10015663; scaffold1372 WUBlastX LINE_RTE-X 109453 109830 62 + . . scaffold1372 GLEAN mRNA 109826 110110 0.255831 - . ID=CGI_10015663; scaffold1372 WUBlastX LINE_RTE-X 109826 110110 92 + . . scaffold1372 GLEAN mRNA 109844 110014 0.255831 - . ID=CGI_10015663; scaffold1372 WUBlastX LINE_RTE-X 109844 110014 97 + . . scaffold1372 GLEAN mRNA 270233 270600 0.998088 - . ID=CGI_10015667; scaffold1372 TRF Tandem_Repeat 270233 270600 576 + . . scaffold1372 GLEAN mRNA 274345 274395 0.998088 - . ID=CGI_10015667; scaffold1372 TRF Tandem_Repeat 274345 274395 102 + . . scaffold1372 GLEAN mRNA 274715 274755 0.998088 - . ID=CGI_10015667; scaffold1372 TRF Tandem_Repeat 274715 274755 73 + . . scaffold1372 GLEAN mRNA 293540 293585 0.71724 - . ID=CGI_10015668; scaffold1372 TRF Tandem_Repeat 293540 293585 92 + . . scaffold1372 GLEAN mRNA 294685 294750 0.71724 - . ID=CGI_10015668; scaffold1372 TRF Tandem_Repeat 294685 294750 132 + . . scaffold1372 GLEAN mRNA 305266 305301 0.71724 - . ID=CGI_10015668; scaffold1372 TRF Tandem_Repeat 305266 305301 72 + . . scaffold1372 GLEAN mRNA 342526 342579 0.994485 + . ID=CGI_10015669; scaffold1372 TRF Tandem_Repeat 342526 342579 108 + . . scaffold1372 GLEAN mRNA 344448 344483 0.994485 + . ID=CGI_10015669; scaffold1372 TRF Tandem_Repeat 344448 344483 72 + . . scaffold1372 GLEAN mRNA 347034 347095 0.58791 + . ID=CGI_10015670; scaffold1372 TRF Tandem_Repeat 347034 347095 88 + . . scaffold1372 GLEAN mRNA 347029 347088 0.58791 + . ID=CGI_10015670; scaffold1372 TRF Tandem_Repeat 347029 347088 84 + . . scaffold1372 GLEAN mRNA 347119 347907 0.58791 + . ID=CGI_10015670; scaffold1372 TRF Tandem_Repeat 347119 347907 1180 + . . scaffold1372 GLEAN mRNA 350567 350792 0.58791 + . ID=CGI_10015670; scaffold1372 TRF Tandem_Repeat 350567 350792 196 + . . scaffold1372 GLEAN mRNA 351040 351227 0.58791 + . ID=CGI_10015670; scaffold1372 TRF Tandem_Repeat 351040 351227 209 + . . scaffold1372 GLEAN mRNA 370978 371062 0.631038 - . ID=CGI_10015671; scaffold1372 TRF Tandem_Repeat 370978 371062 170 + . . scaffold479 GLEAN mRNA 17249 17278 0.996603 - . ID=CGI_10015678; scaffold479 TRF Tandem_Repeat 17249 17278 60 + . . scaffold479 GLEAN mRNA 21974 22014 0.996603 - . ID=CGI_10015678; scaffold479 TRF Tandem_Repeat 21974 22014 82 + . . scaffold479 GLEAN mRNA 36385 36645 0.996603 - . ID=CGI_10015678; scaffold479 TRF Tandem_Repeat 36385 36645 274 + . . scaffold479 GLEAN mRNA 36363 36593 0.996603 - . ID=CGI_10015678; scaffold479 TRF Tandem_Repeat 36363 36593 178 + . . scaffold479 GLEAN mRNA 38821 39212 0.996603 - . ID=CGI_10015678; scaffold479 TRF Tandem_Repeat 38821 39212 335 + . . scaffold479 GLEAN mRNA 89652 89699 0.898056 + . ID=CGI_10015682; scaffold479 TRF Tandem_Repeat 89652 89699 96 + . . scaffold479 GLEAN mRNA 94074 94864 0.898056 + . ID=CGI_10015682; scaffold479 TRF Tandem_Repeat 94074 94864 1197 + . . scaffold479 GLEAN mRNA 96709 96857 0.898056 + . ID=CGI_10015682; scaffold479 TRF Tandem_Repeat 96709 96857 95 + . . scaffold479 GLEAN mRNA 83403 83693 0.898056 + . ID=CGI_10015682; scaffold479 WUBlastX LTR_DIRS 83403 83693 55 + . . scaffold479 GLEAN mRNA 85972 86403 0.898056 + . ID=CGI_10015682; scaffold479 WUBlastX LTR_Ngaro 85972 86403 126 + . . scaffold479 GLEAN mRNA 83740 84354 0.898056 + . ID=CGI_10015682; scaffold479 WUBlastX LTR_Ngaro 83740 84354 61 + . . scaffold479 GLEAN mRNA 87441 88322 0.898056 + . ID=CGI_10015682; scaffold479 WUBlastX LTR_Ngaro 87441 88322 213 + . . scaffold479 GLEAN mRNA 86158 86448 0.898056 + . ID=CGI_10015682; scaffold479 WUBlastX LTR_Ngaro 86158 86448 176 + . . scaffold479 GLEAN mRNA 86451 86630 0.898056 + . ID=CGI_10015682; scaffold479 WUBlastX LTR_Ngaro 86451 86630 66 + . . scaffold479 GLEAN mRNA 86630 87454 0.898056 + . ID=CGI_10015682; scaffold479 WUBlastX LTR_Ngaro 86630 87454 278 + . . scaffold479 GLEAN mRNA 87495 88199 0.898056 + . ID=CGI_10015682; scaffold479 WUBlastX LTR_Ngaro 87495 88199 224 + . . scaffold479 GLEAN mRNA 83385 83747 0.898056 + . ID=CGI_10015682; scaffold479 WUBlastX LTR_DIRS 83385 83747 30 + . . scaffold479 GLEAN mRNA 94074 94864 0.988442 - . ID=CGI_10015683; scaffold479 TRF Tandem_Repeat 94074 94864 1197 + . . scaffold479 GLEAN mRNA 96709 96857 0.988442 - . ID=CGI_10015683; scaffold479 TRF Tandem_Repeat 96709 96857 95 + . . scaffold479 GLEAN mRNA 102223 102517 0.999676 - . ID=CGI_10015684; scaffold479 TRF Tandem_Repeat 102223 102517 310 + . . scaffold479 GLEAN mRNA 112853 112884 0.968499 + . ID=CGI_10015685; scaffold479 TRF Tandem_Repeat 112853 112884 64 + . . scaffold479 GLEAN mRNA 114101 114292 0.968499 + . ID=CGI_10015685; scaffold479 TRF Tandem_Repeat 114101 114292 244 + . . scaffold479 GLEAN mRNA 138690 138997 0.996251 + . ID=CGI_10015687; scaffold479 TRF Tandem_Repeat 138690 138997 382 + . . scaffold479 GLEAN mRNA 138730 138998 0.996251 + . ID=CGI_10015687; scaffold479 TRF Tandem_Repeat 138730 138998 384 + . . scaffold479 GLEAN mRNA 141674 141703 0.996251 + . ID=CGI_10015687; scaffold479 TRF Tandem_Repeat 141674 141703 60 + . . scaffold479 GLEAN mRNA 149815 149926 0.999672 - . ID=CGI_10015691; scaffold479 TRF Tandem_Repeat 149815 149926 197 + . . scaffold479 GLEAN mRNA 153921 153978 0.999672 - . ID=CGI_10015691; scaffold479 TRF Tandem_Repeat 153921 153978 116 + . . scaffold479 GLEAN mRNA 237067 237094 0.618241 - . ID=CGI_10015696; scaffold479 WUBlastX LTR_Ngaro 236801 237094 54 - . . scaffold479 GLEAN mRNA 237067 237097 0.618241 - . ID=CGI_10015696; scaffold479 WUBlastX LTR_Ngaro 236879 237097 70 - . . scaffold479 GLEAN mRNA 271511 271644 0.229566 + . ID=CGI_10015697; scaffold479 TRF Tandem_Repeat 271511 271644 92 + . . scaffold479 GLEAN mRNA 308598 308720 0.478892 - . ID=CGI_10015700; scaffold479 WUBlastX LINE_RTE-X 308598 308720 49 + . . scaffold479 GLEAN mRNA 308595 308759 0.478892 - . ID=CGI_10015700; scaffold479 WUBlastX LINE_RTE-X 308595 308759 47 + . . scaffold479 GLEAN mRNA 308230 308451 0.478892 - . ID=CGI_10015700; scaffold479 WUBlastX LINE_RTE-X 308230 308451 23 + . . scaffold479 GLEAN mRNA 424337 424792 0.99319 + . ID=CGI_10015702; scaffold479 WUBlastX LTR_Ngaro 424337 424792 119 + . . scaffold479 GLEAN mRNA 421893 422201 0.99319 + . ID=CGI_10015702; scaffold479 WUBlastX LTR_Ngaro 421893 422201 115 + . . scaffold479 GLEAN mRNA 421476 422201 0.99319 + . ID=CGI_10015702; scaffold479 WUBlastX LTR_Ngaro 421476 422201 97 + . . scaffold479 GLEAN mRNA 424762 425037 0.99319 + . ID=CGI_10015702; scaffold479 WUBlastX LTR_Ngaro 424762 425037 94 + . . scaffold479 GLEAN mRNA 423994 424134 0.99319 + . ID=CGI_10015702; scaffold479 WUBlastX LTR_Ngaro 423994 424134 49 + . . scaffold479 GLEAN mRNA 422522 423994 0.99319 + . ID=CGI_10015702; scaffold479 WUBlastX LTR_Ngaro 422522 423994 629 + . . scaffold62 GLEAN mRNA 23210 23467 1 - . ID=CGI_10015703; scaffold62 WUBlastX LTR_DIRS 23210 23467 112 + . . scaffold62 GLEAN mRNA 148536 149660 0.995011 - . ID=CGI_10015706; scaffold62 TRF Tandem_Repeat 148536 149660 1675 + . . scaffold62 GLEAN mRNA 160650 160790 1 - . ID=CGI_10015707; scaffold62 TRF Tandem_Repeat 160650 160790 120 + . . scaffold62 GLEAN mRNA 194161 194227 0.999284 - . ID=CGI_10015710; scaffold62 TRF Tandem_Repeat 194161 194227 89 + . . scaffold62 GLEAN mRNA 196467 196533 0.999284 - . ID=CGI_10015710; scaffold62 TRF Tandem_Repeat 196467 196533 71 + . . scaffold62 GLEAN mRNA 206647 207437 0.999948 - . ID=CGI_10015712; scaffold62 TRF Tandem_Repeat 206647 207437 960 + . . scaffold62 GLEAN mRNA 207608 207638 0.999948 - . ID=CGI_10015712; scaffold62 TRF Tandem_Repeat 207608 207638 53 + . . scaffold62 GLEAN mRNA 235122 235146 0.789941 - . ID=CGI_10015713; scaffold62 TRF Tandem_Repeat 235122 235146 50 + . . scaffold62 GLEAN mRNA 238298 238370 0.789941 - . ID=CGI_10015713; scaffold62 TRF Tandem_Repeat 238298 238370 66 + . . scaffold62 GLEAN mRNA 299576 299725 0.993887 - . ID=CGI_10015717; scaffold62 WUBlastX LINE_RTE-BovB 299576 299725 21 - . . scaffold62 GLEAN mRNA 406483 406509 1 + . ID=CGI_10015722; scaffold62 TRF Tandem_Repeat 406483 406509 54 + . . scaffold62 GLEAN mRNA 409784 409850 1 + . ID=CGI_10015722; scaffold62 TRF Tandem_Repeat 409784 409850 98 + . . scaffold62 GLEAN mRNA 410631 410695 1 + . ID=CGI_10015722; scaffold62 TRF Tandem_Repeat 410631 410695 112 + . . scaffold802 GLEAN mRNA 5827 6312 0.999998 - . ID=CGI_10015724; scaffold802 WUBlastX DNA_Sola 5827 6312 35 - . . scaffold802 GLEAN mRNA 6484 6651 0.999998 - . ID=CGI_10015724; scaffold802 WUBlastX DNA_Sola 6484 6651 66 - . . scaffold802 GLEAN mRNA 140623 140663 0.499283 - . ID=CGI_10015727; scaffold802 TRF Tandem_Repeat 140623 140663 82 + . . scaffold802 GLEAN mRNA 141836 141873 0.499283 - . ID=CGI_10015727; scaffold802 TRF Tandem_Repeat 141836 141873 69 + . . scaffold802 GLEAN mRNA 141234 141470 0.499283 - . ID=CGI_10015727; scaffold802 WUBlastX LINE_L1-Tx1 141234 141470 116 + . . scaffold802 GLEAN mRNA 141020 141229 0.499283 - . ID=CGI_10015727; scaffold802 WUBlastX LINE_L1-Tx1 141020 141229 37 + . . scaffold802 GLEAN mRNA 141128 141259 0.499283 - . ID=CGI_10015727; scaffold802 WUBlastX LINE_L1 141128 141259 42 + . . scaffold802 GLEAN mRNA 141216 141674 0.499283 - . ID=CGI_10015727; scaffold802 WUBlastX LINE_L1-Tx1 141216 141674 81 + . . scaffold802 GLEAN mRNA 141255 141602 0.499283 - . ID=CGI_10015727; scaffold802 WUBlastX LINE_L1-Tx1 141255 141602 92 + . . scaffold802 GLEAN mRNA 153706 153772 0.499283 - . ID=CGI_10015727; scaffold802 TRF Tandem_Repeat 153706 153772 80 + . . scaffold802 GLEAN mRNA 169578 169626 0.499283 - . ID=CGI_10015727; scaffold802 TRF Tandem_Repeat 169578 169626 98 + . . scaffold802 GLEAN mRNA 190613 190655 0.499283 - . ID=CGI_10015727; scaffold802 TRF Tandem_Repeat 190613 190655 59 + . . scaffold802 GLEAN mRNA 191905 191958 0.499283 - . ID=CGI_10015727; scaffold802 TRF Tandem_Repeat 191905 191958 54 + . . scaffold802 GLEAN mRNA 209340 209383 0.487761 - . ID=CGI_10015728; scaffold802 TRF Tandem_Repeat 209340 209383 52 + . . scaffold802 GLEAN mRNA 209795 209834 0.487761 - . ID=CGI_10015728; scaffold802 TRF Tandem_Repeat 209795 209834 53 + . . scaffold802 GLEAN mRNA 291877 291963 0.288686 - . ID=CGI_10015729; scaffold802 TRF Tandem_Repeat 291877 291963 126 + . . scaffold802 GLEAN mRNA 306438 306473 0.288686 - . ID=CGI_10015729; scaffold802 TRF Tandem_Repeat 306438 306473 63 + . . scaffold802 GLEAN mRNA 315105 315157 0.777738 + . ID=CGI_10015731; scaffold802 TRF Tandem_Repeat 315105 315157 106 + . . scaffold802 GLEAN mRNA 319098 319127 0.99992 + . ID=CGI_10015732; scaffold802 TRF Tandem_Repeat 319098 319127 51 + . . scaffold802 GLEAN mRNA 319748 319772 0.99992 + . ID=CGI_10015732; scaffold802 TRF Tandem_Repeat 319748 319772 50 + . . scaffold802 GLEAN mRNA 319866 319896 0.99992 + . ID=CGI_10015732; scaffold802 TRF Tandem_Repeat 319866 319896 53 + . . scaffold802 GLEAN mRNA 319929 320345 0.99992 + . ID=CGI_10015732; scaffold802 TRF Tandem_Repeat 319929 320345 521 + . . scaffold802 GLEAN mRNA 320661 320769 0.99992 + . ID=CGI_10015732; scaffold802 TRF Tandem_Repeat 320661 320769 69 + . . scaffold802 GLEAN mRNA 320973 321055 0.99992 + . ID=CGI_10015732; scaffold802 TRF Tandem_Repeat 320973 321055 87 + . . scaffold802 GLEAN mRNA 320973 321093 0.99992 + . ID=CGI_10015732; scaffold802 TRF Tandem_Repeat 320973 321093 127 + . . scaffold802 GLEAN mRNA 320973 321085 0.99992 + . ID=CGI_10015732; scaffold802 TRF Tandem_Repeat 320973 321085 86 + . . scaffold802 GLEAN mRNA 352700 352729 0.99992 + . ID=CGI_10015732; scaffold802 TRF Tandem_Repeat 352700 352729 60 + . . scaffold802 GLEAN mRNA 364322 364607 1 - . ID=CGI_10015734; scaffold802 TRF Tandem_Repeat 364322 364607 428 + . . scaffold802 GLEAN mRNA 364325 364593 1 - . ID=CGI_10015734; scaffold802 TRF Tandem_Repeat 364325 364593 313 + . . scaffold802 GLEAN mRNA 364620 364807 1 - . ID=CGI_10015734; scaffold802 TRF Tandem_Repeat 364620 364807 223 + . . scaffold802 GLEAN mRNA 364620 364809 1 - . ID=CGI_10015734; scaffold802 TRF Tandem_Repeat 364620 364809 143 + . . scaffold802 GLEAN mRNA 364894 364980 1 - . ID=CGI_10015734; scaffold802 TRF Tandem_Repeat 364894 364980 113 + . . scaffold802 GLEAN mRNA 402823 403269 0.586574 + . ID=CGI_10015735; scaffold802 WUBlastX LINE_L1 402823 403269 30 + . . scaffold802 GLEAN mRNA 427734 427782 0.999949 - . ID=CGI_10015736; scaffold802 TRF Tandem_Repeat 427734 427782 98 + . . scaffold105 GLEAN mRNA 21625 21674 0.998049 + . ID=CGI_10015738; scaffold105 TRF Tandem_Repeat 21625 21674 64 + . . scaffold105 GLEAN mRNA 21616 21667 0.998049 + . ID=CGI_10015738; scaffold105 TRF Tandem_Repeat 21616 21667 68 + . . scaffold105 GLEAN mRNA 32392 32669 0.998049 + . ID=CGI_10015738; scaffold105 TRF Tandem_Repeat 32392 32669 522 + . . scaffold105 GLEAN mRNA 43531 43681 0.998049 + . ID=CGI_10015738; scaffold105 TRF Tandem_Repeat 43531 43681 83 + . . scaffold105 GLEAN mRNA 71025 71069 0.718564 + . ID=CGI_10015740; scaffold105 TRF Tandem_Repeat 71025 71069 90 + . . scaffold105 GLEAN mRNA 83769 83805 0.999898 - . ID=CGI_10015741; scaffold105 TRF Tandem_Repeat 83769 83805 56 + . . scaffold105 GLEAN mRNA 86093 86197 0.999898 - . ID=CGI_10015741; scaffold105 TRF Tandem_Repeat 86093 86197 192 + . . scaffold105 GLEAN mRNA 319192 319537 1 + . ID=CGI_10015755; scaffold105 TRF Tandem_Repeat 319192 319537 277 + . . scaffold105 GLEAN mRNA 319603 319652 1 + . ID=CGI_10015755; scaffold105 TRF Tandem_Repeat 319603 319652 100 + . . scaffold105 GLEAN mRNA 317526 317606 1 + . ID=CGI_10015755; scaffold105 WUBlastX DNA_hAT-Ac 317526 317606 56 - . . scaffold105 GLEAN mRNA 317633 317767 1 + . ID=CGI_10015755; scaffold105 WUBlastX DNA_hAT-Ac 317633 317767 64 - . . scaffold105 GLEAN mRNA 392844 392869 0.99959 + . ID=CGI_10015757; scaffold105 TRF Tandem_Repeat 392844 392869 52 + . . scaffold105 GLEAN mRNA 440625 440683 1 - . ID=CGI_10015758; scaffold105 TRF Tandem_Repeat 440625 440683 61 + . . scaffold499 GLEAN mRNA 25831 26064 1 + . ID=CGI_10015760; scaffold499 WUBlastX LTR_Ngaro 25831 26064 144 + . . scaffold499 GLEAN mRNA 25613 25813 1 + . ID=CGI_10015760; scaffold499 WUBlastX LTR_Ngaro 25613 25813 109 + . . scaffold499 GLEAN mRNA 25568 25816 1 + . ID=CGI_10015760; scaffold499 WUBlastX LTR_Ngaro 25568 25816 85 + . . scaffold499 GLEAN mRNA 52160 52364 0.695159 + . ID=CGI_10015761; scaffold499 TRF Tandem_Repeat 52160 52364 347 + . . scaffold499 GLEAN mRNA 59373 61622 0.695159 + . ID=CGI_10015761; scaffold499 TRF Tandem_Repeat 59373 61622 2473 + . . scaffold499 GLEAN mRNA 94541 94607 0.615404 + . ID=CGI_10015763; scaffold499 TRF Tandem_Repeat 94541 94607 134 + . . scaffold499 GLEAN mRNA 101065 101967 0.615404 + . ID=CGI_10015763; scaffold499 WUBlastX LINE_Proto2 101065 101967 82 - . . scaffold499 GLEAN mRNA 101065 102165 0.615404 + . ID=CGI_10015763; scaffold499 WUBlastX LINE_L2-Hydra 101065 102165 26 - . . scaffold499 GLEAN mRNA 111477 111516 0.571614 + . ID=CGI_10015764; scaffold499 TRF Tandem_Repeat 111477 111516 62 + . . scaffold499 GLEAN mRNA 114306 114339 0.571614 + . ID=CGI_10015764; scaffold499 TRF Tandem_Repeat 114306 114339 59 + . . scaffold499 GLEAN mRNA 124577 124838 0.571614 + . ID=CGI_10015764; scaffold499 TRF Tandem_Repeat 124577 124838 317 + . . scaffold499 GLEAN mRNA 124864 124905 0.571614 + . ID=CGI_10015764; scaffold499 TRF Tandem_Repeat 124864 124905 84 + . . scaffold499 GLEAN mRNA 126131 126414 0.571614 + . ID=CGI_10015764; scaffold499 TRF Tandem_Repeat 126131 126414 360 + . . scaffold499 GLEAN mRNA 126131 126415 0.571614 + . ID=CGI_10015764; scaffold499 TRF Tandem_Repeat 126131 126415 322 + . . scaffold499 GLEAN mRNA 145367 145424 0.910936 + . ID=CGI_10015765; scaffold499 TRF Tandem_Repeat 145367 145424 109 + . . scaffold499 GLEAN mRNA 146068 146113 0.910936 + . ID=CGI_10015765; scaffold499 TRF Tandem_Repeat 146068 146113 83 + . . scaffold499 GLEAN mRNA 153696 153733 0.910936 + . ID=CGI_10015765; scaffold499 TRF Tandem_Repeat 153696 153733 76 + . . scaffold499 GLEAN mRNA 224007 224037 0.79164 - . ID=CGI_10015766; scaffold499 TRF Tandem_Repeat 224007 224037 53 + . . scaffold499 GLEAN mRNA 224031 224064 0.79164 - . ID=CGI_10015766; scaffold499 TRF Tandem_Repeat 224031 224064 59 + . . scaffold499 GLEAN mRNA 251494 252399 0.581333 - . ID=CGI_10015767; scaffold499 WUBlastX LTR_DIRS 251494 252399 608 + . . scaffold499 GLEAN mRNA 252393 253277 0.581333 - . ID=CGI_10015767; scaffold499 WUBlastX LTR_DIRS 252393 253277 513 + . . scaffold499 GLEAN mRNA 251259 251483 0.581333 - . ID=CGI_10015767; scaffold499 WUBlastX LTR_DIRS 251259 251483 48 + . . scaffold499 GLEAN mRNA 253142 253309 0.581333 - . ID=CGI_10015767; scaffold499 WUBlastX LTR_DIRS 253142 253309 81 + . . scaffold499 GLEAN mRNA 250678 251067 0.581333 - . ID=CGI_10015767; scaffold499 WUBlastX LTR_DIRS 250678 251067 93 + . . scaffold499 GLEAN mRNA 251392 252036 0.581333 - . ID=CGI_10015767; scaffold499 WUBlastX LTR_Gypsy 251392 252036 80 + . . scaffold499 GLEAN mRNA 250189 251064 0.581333 - . ID=CGI_10015767; scaffold499 WUBlastX LTR_DIRS 250189 251064 89 + . . scaffold499 GLEAN mRNA 251150 251269 0.581333 - . ID=CGI_10015767; scaffold499 WUBlastX LTR_Gypsy 251150 251269 23 + . . scaffold499 GLEAN mRNA 250489 251067 0.581333 - . ID=CGI_10015767; scaffold499 WUBlastX LTR_DIRS 250489 251067 90 + . . scaffold499 GLEAN mRNA 277441 277497 0.695514 - . ID=CGI_10015769; scaffold499 TRF Tandem_Repeat 277441 277497 107 + . . scaffold499 GLEAN mRNA 290616 290706 0.695514 - . ID=CGI_10015769; scaffold499 TRF Tandem_Repeat 290616 290706 103 + . . scaffold499 GLEAN mRNA 290945 290991 0.695514 - . ID=CGI_10015769; scaffold499 TRF Tandem_Repeat 290945 290991 76 + . . scaffold499 GLEAN mRNA 291074 291098 0.695514 - . ID=CGI_10015769; scaffold499 TRF Tandem_Repeat 291074 291098 50 + . . scaffold499 GLEAN mRNA 291857 291885 0.695514 - . ID=CGI_10015769; scaffold499 TRF Tandem_Repeat 291857 291885 58 + . . scaffold499 GLEAN mRNA 291965 292003 0.695514 - . ID=CGI_10015769; scaffold499 TRF Tandem_Repeat 291965 292003 78 + . . scaffold499 GLEAN mRNA 292238 292357 0.695514 - . ID=CGI_10015769; scaffold499 TRF Tandem_Repeat 292238 292357 118 + . . scaffold499 GLEAN mRNA 350863 351253 0.998349 - . ID=CGI_10015773; scaffold499 TRF Tandem_Repeat 350863 351253 437 + . . scaffold499 GLEAN mRNA 352354 352383 0.998349 - . ID=CGI_10015773; scaffold499 TRF Tandem_Repeat 352354 352383 60 + . . scaffold499 GLEAN mRNA 374660 374709 0.942435 - . ID=CGI_10015774; scaffold499 TRF Tandem_Repeat 374660 374709 84 + . . scaffold499 GLEAN mRNA 418968 419013 0.646963 - . ID=CGI_10015778; scaffold499 TRF Tandem_Repeat 418968 419013 83 + . . scaffold1329 GLEAN mRNA 87479 87778 0.816606 - . ID=CGI_10015782; scaffold1329 WUBlastX DNA_TcMar-m44 87479 87778 140 + . . scaffold1329 GLEAN mRNA 93895 94041 0.816606 - . ID=CGI_10015782; scaffold1329 WUBlastX DNA_hAT-Ac 93895 94041 52 - . . scaffold1329 GLEAN mRNA 91822 92319 0.816606 - . ID=CGI_10015782; scaffold1329 WUBlastX DNA_hAT-Tag1 91822 92319 29 - . . scaffold1329 GLEAN mRNA 92576 93394 0.816606 - . ID=CGI_10015782; scaffold1329 WUBlastX DNA_hAT-Ac 92576 93394 423 - . . scaffold1329 GLEAN mRNA 92624 93541 0.816606 - . ID=CGI_10015782; scaffold1329 WUBlastX DNA_hAT-Ac 92624 93541 188 - . . scaffold1329 GLEAN mRNA 93862 94035 0.816606 - . ID=CGI_10015782; scaffold1329 WUBlastX DNA_hAT 93862 94035 28 - . . scaffold1329 GLEAN mRNA 91963 92553 0.816606 - . ID=CGI_10015782; scaffold1329 WUBlastX DNA_hAT-Ac 91963 92553 202 - . . scaffold1329 GLEAN mRNA 93898 94077 0.816606 - . ID=CGI_10015782; scaffold1329 WUBlastX DNA_hAT-Ac 93898 94077 36 - . . scaffold1329 GLEAN mRNA 91897 92229 0.816606 - . ID=CGI_10015782; scaffold1329 WUBlastX DNA_hAT-Ac 91897 92229 59 - . . scaffold1329 GLEAN mRNA 81916 81953 0.816606 - . ID=CGI_10015782; scaffold1329 TRF Tandem_Repeat 81916 81953 58 + . . scaffold1329 GLEAN mRNA 235349 235466 0.980296 + . ID=CGI_10015786; scaffold1329 TRF Tandem_Repeat 235349 235466 69 + . . scaffold1329 GLEAN mRNA 236518 236559 0.980296 + . ID=CGI_10015786; scaffold1329 TRF Tandem_Repeat 236518 236559 84 + . . scaffold1329 GLEAN mRNA 248372 248506 0.78831 - . ID=CGI_10015787; scaffold1329 TRF Tandem_Repeat 248372 248506 137 + . . scaffold1329 GLEAN mRNA 292741 292797 1 - . ID=CGI_10015792; scaffold1329 TRF Tandem_Repeat 292741 292797 114 + . . scaffold1329 GLEAN mRNA 295004 295059 1 - . ID=CGI_10015792; scaffold1329 TRF Tandem_Repeat 295004 295059 112 + . . scaffold1329 GLEAN mRNA 296254 296311 1 - . ID=CGI_10015792; scaffold1329 TRF Tandem_Repeat 296254 296311 116 + . . scaffold1329 GLEAN mRNA 316166 316220 0.836238 - . ID=CGI_10015793; scaffold1329 TRF Tandem_Repeat 316166 316220 101 + . . scaffold1329 GLEAN mRNA 347035 347061 1 - . ID=CGI_10015796; scaffold1329 TRF Tandem_Repeat 347035 347061 54 + . . scaffold1329 GLEAN mRNA 354177 354231 1 - . ID=CGI_10015797; scaffold1329 TRF Tandem_Repeat 354177 354231 110 + . . scaffold1329 GLEAN mRNA 356220 356277 1 - . ID=CGI_10015797; scaffold1329 TRF Tandem_Repeat 356220 356277 116 + . . scaffold1329 GLEAN mRNA 376025 376052 0.999633 + . ID=CGI_10015798; scaffold1329 TRF Tandem_Repeat 376025 376052 56 + . . scaffold1329 GLEAN mRNA 377380 377428 0.999633 + . ID=CGI_10015798; scaffold1329 TRF Tandem_Repeat 377380 377428 80 + . . scaffold1329 GLEAN mRNA 377065 377355 0.999633 + . ID=CGI_10015798; scaffold1329 WUBlastX LTR_Gypsy 377065 377355 36 + . . scaffold1329 GLEAN mRNA 422361 424019 0.544483 - . ID=CGI_10015799; scaffold1329 TRF Tandem_Repeat 422361 424019 2013 + . . scaffold1329 GLEAN mRNA 422361 424019 0.544483 - . ID=CGI_10015799; scaffold1329 TRF Tandem_Repeat 422361 424019 2040 + . . scaffold227 GLEAN mRNA 31081 31184 0.449006 - . ID=CGI_10015803; scaffold227 TRF Tandem_Repeat 31081 31184 181 + . . scaffold227 GLEAN mRNA 73677 73792 1 + . ID=CGI_10015807; scaffold227 TRF Tandem_Repeat 73677 73792 207 + . . scaffold227 GLEAN mRNA 79263 79298 0.999676 + . ID=CGI_10015808; scaffold227 TRF Tandem_Repeat 79263 79298 72 + . . scaffold227 GLEAN mRNA 79344 79451 0.999676 + . ID=CGI_10015808; scaffold227 TRF Tandem_Repeat 79344 79451 157 + . . scaffold227 GLEAN mRNA 86428 86542 0.999999 + . ID=CGI_10015809; scaffold227 TRF Tandem_Repeat 86428 86542 212 + . . scaffold227 GLEAN mRNA 101399 101456 0.593391 + . ID=CGI_10015810; scaffold227 TRF Tandem_Repeat 101399 101456 116 + . . scaffold227 GLEAN mRNA 150404 150454 0.999983 - . ID=CGI_10015816; scaffold227 TRF Tandem_Repeat 150404 150454 102 + . . scaffold227 GLEAN mRNA 183583 184056 0.544411 - . ID=CGI_10015818; scaffold227 TRF Tandem_Repeat 183583 184056 894 + . . scaffold227 GLEAN mRNA 191184 191231 0.544411 - . ID=CGI_10015818; scaffold227 TRF Tandem_Repeat 191184 191231 96 + . . scaffold227 GLEAN mRNA 196037 196081 0.544411 - . ID=CGI_10015818; scaffold227 TRF Tandem_Repeat 196037 196081 90 + . . scaffold227 GLEAN mRNA 201178 201208 0.999676 + . ID=CGI_10015819; scaffold227 TRF Tandem_Repeat 201178 201208 53 + . . scaffold227 GLEAN mRNA 202407 202460 0.999676 + . ID=CGI_10015819; scaffold227 TRF Tandem_Repeat 202407 202460 108 + . . scaffold227 GLEAN mRNA 203647 203692 0.999676 + . ID=CGI_10015819; scaffold227 TRF Tandem_Repeat 203647 203692 92 + . . scaffold227 GLEAN mRNA 327331 327387 0.531648 - . ID=CGI_10015826; scaffold227 TRF Tandem_Repeat 327331 327387 114 + . . scaffold227 GLEAN mRNA 342767 342823 0.855234 + . ID=CGI_10015827; scaffold227 TRF Tandem_Repeat 342767 342823 62 + . . scaffold227 GLEAN mRNA 346515 346585 0.855234 + . ID=CGI_10015827; scaffold227 TRF Tandem_Repeat 346515 346585 135 + . . scaffold227 GLEAN mRNA 391226 391370 1 - . ID=CGI_10015830; scaffold227 TRF Tandem_Repeat 391226 391370 109 + . . scaffold227 GLEAN mRNA 391259 391365 1 - . ID=CGI_10015830; scaffold227 TRF Tandem_Repeat 391259 391365 127 + . . scaffold987 GLEAN mRNA 77262 77317 0.967174 - . ID=CGI_10015837; scaffold987 TRF Tandem_Repeat 77262 77317 112 + . . scaffold987 GLEAN mRNA 76050 76305 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LINE_L1 76024 76305 27 - . . scaffold987 GLEAN mRNA 76361 76501 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LINE_L1-Tx1 76361 76501 55 - . . scaffold987 GLEAN mRNA 77887 78513 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LINE_CR1 77887 78513 147 - . . scaffold987 GLEAN mRNA 76117 76371 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LINE_L1-Tx1 76117 76371 32 - . . scaffold987 GLEAN mRNA 76494 76724 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LINE_L1-Tx1 76494 76724 84 - . . scaffold987 GLEAN mRNA 80403 80573 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LINE_CR1-L2 80403 80573 81 + . . scaffold987 GLEAN mRNA 83548 83589 0.967174 - . ID=CGI_10015837; scaffold987 TRF Tandem_Repeat 83548 83589 84 + . . scaffold987 GLEAN mRNA 88195 88248 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LTR_Gypsy 88195 88248 27 - . . scaffold987 GLEAN mRNA 88245 88679 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LTR_DIRS 88245 88679 95 - . . scaffold987 GLEAN mRNA 84987 85763 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LTR_DIRS 84987 85763 425 - . . scaffold987 GLEAN mRNA 87137 88114 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LTR_DIRS 87137 88114 422 - . . scaffold987 GLEAN mRNA 85985 86347 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LTR_DIRS 85985 86347 275 - . . scaffold987 GLEAN mRNA 87137 87964 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LTR_DIRS 87137 87964 622 - . . scaffold987 GLEAN mRNA 84972 86003 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LTR_DIRS 84972 86003 342 - . . scaffold987 GLEAN mRNA 81483 81938 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LINE_L2 81483 81938 246 + . . scaffold987 GLEAN mRNA 81285 81989 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LINE_CR1-L2 81285 81989 199 + . . scaffold987 GLEAN mRNA 81570 82166 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LINE_L2 81570 82166 80 + . . scaffold987 GLEAN mRNA 81552 82067 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LINE_CR1 81552 82067 87 + . . scaffold987 GLEAN mRNA 92402 92444 0.990766 + . ID=CGI_10015838; scaffold987 TRF Tandem_Repeat 92402 92444 86 + . . scaffold987 GLEAN mRNA 98073 98509 0.990766 + . ID=CGI_10015838; scaffold987 TRF Tandem_Repeat 98073 98509 779 + . . scaffold987 GLEAN mRNA 98073 98509 1 - . ID=CGI_10015839; scaffold987 TRF Tandem_Repeat 98073 98509 779 + . . scaffold987 GLEAN mRNA 130466 130512 0.998975 - . ID=CGI_10015840; scaffold987 TRF Tandem_Repeat 130466 130512 76 + . . scaffold987 GLEAN mRNA 136986 138363 0.998975 - . ID=CGI_10015840; scaffold987 TRF Tandem_Repeat 136986 138363 865 + . . scaffold987 GLEAN mRNA 240128 240197 1 + . ID=CGI_10015844; scaffold987 TRF Tandem_Repeat 240128 240197 133 + . . scaffold987 GLEAN mRNA 241309 241341 1 + . ID=CGI_10015844; scaffold987 TRF Tandem_Repeat 241309 241341 66 + . . scaffold987 GLEAN mRNA 241309 241341 0.498541 - . ID=CGI_10015845; scaffold987 TRF Tandem_Repeat 241309 241341 66 + . . scaffold987 GLEAN mRNA 255355 255425 0.498541 - . ID=CGI_10015845; scaffold987 TRF Tandem_Repeat 255355 255425 135 + . . scaffold987 GLEAN mRNA 256840 256880 0.498541 - . ID=CGI_10015845; scaffold987 TRF Tandem_Repeat 256840 256880 82 + . . scaffold987 GLEAN mRNA 306680 306915 0.858368 + . ID=CGI_10015851; scaffold987 TRF Tandem_Repeat 306680 306915 386 + . . scaffold987 GLEAN mRNA 310625 310811 0.858368 + . ID=CGI_10015851; scaffold987 TRF Tandem_Repeat 310625 310811 164 + . . scaffold987 GLEAN mRNA 311619 311693 0.858368 + . ID=CGI_10015851; scaffold987 TRF Tandem_Repeat 311619 311693 89 + . . scaffold987 GLEAN mRNA 332962 334555 0.858368 + . ID=CGI_10015851; scaffold987 TRF Tandem_Repeat 332962 334555 1796 + . . scaffold1293 GLEAN mRNA 128897 128944 0.992461 + . ID=CGI_10015859; scaffold1293 TRF Tandem_Repeat 128897 128944 96 + . . scaffold1293 GLEAN mRNA 132779 132852 0.992461 + . ID=CGI_10015859; scaffold1293 TRF Tandem_Repeat 132779 132852 87 + . . scaffold1293 GLEAN mRNA 133022 134534 0.992461 + . ID=CGI_10015859; scaffold1293 TRF Tandem_Repeat 133022 134534 2145 + . . scaffold1293 GLEAN mRNA 165762 166146 0.990352 - . ID=CGI_10015860; scaffold1293 TRF Tandem_Repeat 165762 166146 467 + . . scaffold1293 GLEAN mRNA 181427 181615 0.990352 - . ID=CGI_10015860; scaffold1293 TRF Tandem_Repeat 181427 181615 360 + . . scaffold1293 GLEAN mRNA 181759 181895 0.990352 - . ID=CGI_10015860; scaffold1293 TRF Tandem_Repeat 181759 181895 265 + . . scaffold1293 GLEAN mRNA 301424 301457 0.794425 - . ID=CGI_10015868; scaffold1293 TRF Tandem_Repeat 301424 301457 68 + . . scaffold1293 GLEAN mRNA 308672 308706 0.794425 - . ID=CGI_10015868; scaffold1293 TRF Tandem_Repeat 308672 308706 70 + . . scaffold1293 GLEAN mRNA 319027 319097 0.986589 - . ID=CGI_10015869; scaffold1293 TRF Tandem_Repeat 319027 319097 88 + . . scaffold1293 GLEAN mRNA 320937 321041 0.986589 - . ID=CGI_10015869; scaffold1293 TRF Tandem_Repeat 320937 321041 103 + . . scaffold1293 GLEAN mRNA 327085 327125 0.986589 - . ID=CGI_10015869; scaffold1293 TRF Tandem_Repeat 327085 327125 82 + . . scaffold1293 GLEAN mRNA 345724 345750 0.986589 - . ID=CGI_10015869; scaffold1293 TRF Tandem_Repeat 345724 345750 54 + . . scaffold1293 GLEAN mRNA 386772 386816 0.811185 + . ID=CGI_10015872; scaffold1293 TRF Tandem_Repeat 386772 386816 81 + . . scaffold1293 GLEAN mRNA 390279 390313 0.811185 + . ID=CGI_10015872; scaffold1293 TRF Tandem_Repeat 390279 390313 70 + . . scaffold1293 GLEAN mRNA 386772 386816 0.998315 - . ID=CGI_10015873; scaffold1293 TRF Tandem_Repeat 386772 386816 81 + . . scaffold1293 GLEAN mRNA 390279 390313 0.998315 - . ID=CGI_10015873; scaffold1293 TRF Tandem_Repeat 390279 390313 70 + . . scaffold1293 GLEAN mRNA 433032 433329 0.916319 + . ID=CGI_10015875; scaffold1293 TRF Tandem_Repeat 433032 433329 233 + . . scaffold1293 GLEAN mRNA 433669 433977 0.916319 + . ID=CGI_10015875; scaffold1293 TRF Tandem_Repeat 433669 433977 343 + . . scaffold210 GLEAN mRNA 86100 86148 1 + . ID=CGI_10015882; scaffold210 TRF Tandem_Repeat 86100 86148 98 + . . scaffold210 GLEAN mRNA 142425 142931 0.999676 - . ID=CGI_10015883; scaffold210 WUBlastX LINE_L2 142425 142931 170 - . . scaffold210 GLEAN mRNA 141330 141659 0.999676 - . ID=CGI_10015883; scaffold210 WUBlastX LINE_RTE-X 141330 141659 157 + . . scaffold210 GLEAN mRNA 141237 141650 0.999676 - . ID=CGI_10015883; scaffold210 WUBlastX LINE_RTE-X 141237 141650 72 + . . scaffold210 GLEAN mRNA 141794 142114 0.999676 - . ID=CGI_10015883; scaffold210 WUBlastX LINE_RTE-X 141794 142114 153 + . . scaffold210 GLEAN mRNA 144683 146959 0.999676 - . ID=CGI_10015883; scaffold210 WUBlastX LINE_L2 144683 146959 1260 - . . scaffold210 GLEAN mRNA 141360 141755 0.999676 - . ID=CGI_10015883; scaffold210 WUBlastX LINE_I 141360 141755 68 + . . scaffold210 GLEAN mRNA 141722 142165 0.999676 - . ID=CGI_10015883; scaffold210 WUBlastX LINE_RTE-X 141722 142165 143 + . . scaffold210 GLEAN mRNA 148390 148917 0.999676 - . ID=CGI_10015883; scaffold210 WUBlastX LINE_RTE-X 148390 148917 81 + . . scaffold210 GLEAN mRNA 148291 148890 0.999676 - . ID=CGI_10015883; scaffold210 WUBlastX LINE_RTE-X 148291 148890 35 + . . scaffold210 GLEAN mRNA 148113 148220 0.999676 - . ID=CGI_10015883; scaffold210 WUBlastX LINE_RTE-X 148113 148220 47 + . . scaffold210 GLEAN mRNA 148390 148797 0.999676 - . ID=CGI_10015883; scaffold210 WUBlastX LINE_RTE-X 148390 148797 106 + . . scaffold210 GLEAN mRNA 194724 195221 0.676627 + . ID=CGI_10015887; scaffold210 TRF Tandem_Repeat 194724 195221 614 + . . scaffold210 GLEAN mRNA 198240 199331 0.676627 + . ID=CGI_10015887; scaffold210 TRF Tandem_Repeat 198240 199331 1591 + . . scaffold210 GLEAN mRNA 219841 219885 1 + . ID=CGI_10015888; scaffold210 TRF Tandem_Repeat 219841 219885 90 + . . scaffold210 GLEAN mRNA 226235 226327 0.552757 + . ID=CGI_10015889; scaffold210 WUBlastX LTR_Ngaro 226235 226327 20 + . . scaffold210 GLEAN mRNA 223521 223766 0.552757 + . ID=CGI_10015889; scaffold210 WUBlastX LTR_Ngaro 223521 223766 174 + . . scaffold210 GLEAN mRNA 225226 225414 0.552757 + . ID=CGI_10015889; scaffold210 WUBlastX LTR_Ngaro 225226 225414 28 + . . scaffold210 GLEAN mRNA 223521 224009 0.552757 + . ID=CGI_10015889; scaffold210 WUBlastX LTR_Ngaro 223521 224009 88 + . . scaffold210 GLEAN mRNA 225375 226229 0.552757 + . ID=CGI_10015889; scaffold210 WUBlastX LTR_Ngaro 225375 226229 258 + . . scaffold210 GLEAN mRNA 224167 224769 0.552757 + . ID=CGI_10015889; scaffold210 WUBlastX LTR_Ngaro 224167 224769 379 + . . scaffold210 GLEAN mRNA 224170 224676 0.552757 + . ID=CGI_10015889; scaffold210 WUBlastX LTR_Ngaro 224170 224676 389 + . . scaffold210 GLEAN mRNA 225153 225224 0.552757 + . ID=CGI_10015889; scaffold210 WUBlastX LTR_Ngaro 225153 225224 23 + . . scaffold210 GLEAN mRNA 224681 225130 0.552757 + . ID=CGI_10015889; scaffold210 WUBlastX LTR_Ngaro 224681 225130 310 + . . scaffold210 GLEAN mRNA 261371 263122 0.958099 - . ID=CGI_10015891; scaffold210 WUBlastX DNA_En-Spm 261371 263122 401 + . . scaffold210 GLEAN mRNA 261371 263122 0.16485 + . ID=CGI_10015893; scaffold210 WUBlastX DNA_En-Spm 261371 263122 401 + . . scaffold210 GLEAN mRNA 358406 358870 1 + . ID=CGI_10015899; scaffold210 WUBlastX DNA_hAT-Ac 358406 358870 171 - . . scaffold210 GLEAN mRNA 358283 358753 1 + . ID=CGI_10015899; scaffold210 WUBlastX DNA_hAT-Ac 358283 358753 80 - . . scaffold210 GLEAN mRNA 363396 363879 1 + . ID=CGI_10015899; scaffold210 TRF Tandem_Repeat 363396 363879 968 + . . scaffold210 GLEAN mRNA 413682 413728 0.526266 + . ID=CGI_10015905; scaffold210 TRF Tandem_Repeat 413682 413728 94 + . . scaffold210 GLEAN mRNA 421790 421918 0.526266 + . ID=CGI_10015905; scaffold210 WUBlastX LINE_RTE-BovB 421790 421918 56 + . . scaffold210 GLEAN mRNA 422205 422238 1 - . ID=CGI_10015906; scaffold210 TRF Tandem_Repeat 422205 422238 52 + . . scaffold210 GLEAN mRNA 431856 431930 0.999993 - . ID=CGI_10015907; scaffold210 TRF Tandem_Repeat 431856 431930 141 + . . scaffold210 GLEAN mRNA 432815 432853 0.999993 - . ID=CGI_10015907; scaffold210 TRF Tandem_Repeat 432815 432853 78 + . . scaffold210 GLEAN mRNA 438859 439737 0.999993 - . ID=CGI_10015907; scaffold210 WUBlastX LINE_L2 438859 439737 326 - . . scaffold210 GLEAN mRNA 439748 440077 0.999993 - . ID=CGI_10015907; scaffold210 WUBlastX LINE_L2 439748 440077 178 - . . scaffold210 GLEAN mRNA 427104 427439 0.999993 - . ID=CGI_10015907; scaffold210 WUBlastX DNA_Crypton 427104 427439 104 + . . scaffold210 GLEAN mRNA 427140 427637 0.999993 - . ID=CGI_10015907; scaffold210 WUBlastX DNA_Crypton 427140 427637 28 + . . scaffold1849 GLEAN mRNA 162 227 1 + . ID=CGI_10015908; scaffold1849 TRF Tandem_Repeat 162 227 132 + . . scaffold1849 GLEAN mRNA 36508 36546 0.651135 + . ID=CGI_10015910; scaffold1849 TRF Tandem_Repeat 36508 36546 78 + . . scaffold1849 GLEAN mRNA 50161 50541 0.9993 + . ID=CGI_10015911; scaffold1849 TRF Tandem_Repeat 50161 50541 753 + . . scaffold1849 GLEAN mRNA 55745 55838 0.9993 + . ID=CGI_10015911; scaffold1849 TRF Tandem_Repeat 55745 55838 179 + . . scaffold1849 GLEAN mRNA 50161 50541 1 - . ID=CGI_10015912; scaffold1849 TRF Tandem_Repeat 50161 50541 753 + . . scaffold1849 GLEAN mRNA 83390 84017 0.818968 - . ID=CGI_10015914; scaffold1849 TRF Tandem_Repeat 83390 84017 767 + . . scaffold1849 GLEAN mRNA 94844 94982 0.818968 - . ID=CGI_10015914; scaffold1849 TRF Tandem_Repeat 94844 94982 109 + . . scaffold1849 GLEAN mRNA 95370 95667 0.818968 - . ID=CGI_10015914; scaffold1849 TRF Tandem_Repeat 95370 95667 331 + . . scaffold1849 GLEAN mRNA 84183 84596 0.818968 - . ID=CGI_10015914; scaffold1849 WUBlastX LINE_CR1 84183 84596 89 - . . scaffold1849 GLEAN mRNA 84294 85283 0.818968 - . ID=CGI_10015914; scaffold1849 WUBlastX LINE_CR1 84294 85283 99 - . . scaffold1849 GLEAN mRNA 84213 85475 0.818968 - . ID=CGI_10015914; scaffold1849 WUBlastX LINE_CR1 84213 85475 44 - . . scaffold1849 GLEAN mRNA 84309 85055 0.818968 - . ID=CGI_10015914; scaffold1849 WUBlastX LINE_CR1 84309 85055 142 - . . scaffold1849 GLEAN mRNA 104560 104872 0.818968 - . ID=CGI_10015914; scaffold1849 TRF Tandem_Repeat 104560 104872 136 + . . scaffold1849 GLEAN mRNA 94844 94982 0.999676 + . ID=CGI_10015915; scaffold1849 TRF Tandem_Repeat 94844 94982 109 + . . scaffold1849 GLEAN mRNA 95370 95667 0.999676 + . ID=CGI_10015915; scaffold1849 TRF Tandem_Repeat 95370 95667 331 + . . scaffold1849 GLEAN mRNA 104560 104872 0.999676 + . ID=CGI_10015915; scaffold1849 TRF Tandem_Repeat 104560 104872 136 + . . scaffold1849 GLEAN mRNA 134133 134342 0.7781 + . ID=CGI_10015917; scaffold1849 WUBlastX LTR_Gypsy 134133 134342 42 - . . scaffold1849 GLEAN mRNA 133753 134088 0.7781 + . ID=CGI_10015917; scaffold1849 WUBlastX LTR_Gypsy 133753 134088 234 - . . scaffold1849 GLEAN mRNA 132974 133759 0.7781 + . ID=CGI_10015917; scaffold1849 WUBlastX LTR_Gypsy 132974 133759 505 - . . scaffold1849 GLEAN mRNA 134232 134750 0.7781 + . ID=CGI_10015917; scaffold1849 WUBlastX LTR_Gypsy 134232 134750 285 - . . scaffold1849 GLEAN mRNA 134699 135022 0.7781 + . ID=CGI_10015917; scaffold1849 WUBlastX LTR_Gypsy 134699 135022 177 - . . scaffold1849 GLEAN mRNA 132893 133384 0.7781 + . ID=CGI_10015917; scaffold1849 WUBlastX LTR_Gypsy 132893 133384 57 - . . scaffold1849 GLEAN mRNA 277543 278207 1 + . ID=CGI_10015918; scaffold1849 TRF Tandem_Repeat 277543 278207 899 + . . scaffold1849 GLEAN mRNA 279342 281101 1 + . ID=CGI_10015918; scaffold1849 TRF Tandem_Repeat 279342 281101 2456 + . . scaffold1849 GLEAN mRNA 279342 281101 1 + . ID=CGI_10015918; scaffold1849 TRF Tandem_Repeat 279342 281101 2462 + . . scaffold1849 GLEAN mRNA 349432 349638 0.662499 + . ID=CGI_10015920; scaffold1849 WUBlastX LINE_L2 349432 349638 51 - . . scaffold1849 GLEAN mRNA 349432 349596 0.662499 + . ID=CGI_10015920; scaffold1849 WUBlastX LINE_CR1-L2 349432 349596 70 - . . scaffold1849 GLEAN mRNA 349596 349658 0.662499 + . ID=CGI_10015920; scaffold1849 WUBlastX LINE_CR1-L2 349596 349658 49 - . . scaffold34 GLEAN mRNA 16153 16198 0.99993 + . ID=CGI_10015925; scaffold34 TRF Tandem_Repeat 16153 16198 76 + . . scaffold34 GLEAN mRNA 16148 16201 0.99993 + . ID=CGI_10015925; scaffold34 TRF Tandem_Repeat 16148 16201 76 + . . scaffold34 GLEAN mRNA 16371 17115 0.99993 + . ID=CGI_10015925; scaffold34 TRF Tandem_Repeat 16371 17115 1249 + . . scaffold34 GLEAN mRNA 16368 17207 0.99993 + . ID=CGI_10015925; scaffold34 TRF Tandem_Repeat 16368 17207 1247 + . . scaffold34 GLEAN mRNA 34804 34860 0.889853 - . ID=CGI_10015926; scaffold34 TRF Tandem_Repeat 34804 34860 114 + . . scaffold34 GLEAN mRNA 81224 81278 0.738396 + . ID=CGI_10015928; scaffold34 TRF Tandem_Repeat 81224 81278 60 + . . scaffold34 GLEAN mRNA 81224 81278 0.738396 + . ID=CGI_10015928; scaffold34 TRF Tandem_Repeat 81224 81278 71 + . . scaffold34 GLEAN mRNA 84588 84917 0.738396 + . ID=CGI_10015928; scaffold34 WUBlastX LINE_L1 84588 84917 23 - . . scaffold34 GLEAN mRNA 84588 84899 0.990803 - . ID=CGI_10015929; scaffold34 WUBlastX LINE_L1 84588 84917 23 - . . scaffold34 GLEAN mRNA 92377 92433 0.942408 + . ID=CGI_10015930; scaffold34 TRF Tandem_Repeat 92377 92433 114 + . . scaffold34 GLEAN mRNA 106523 106729 0.942408 + . ID=CGI_10015930; scaffold34 WUBlastX LINE_L2 106523 106729 44 - . . scaffold34 GLEAN mRNA 270795 270854 0.995008 + . ID=CGI_10015942; scaffold34 TRF Tandem_Repeat 270795 270854 57 + . . scaffold34 GLEAN mRNA 270795 270843 0.995008 + . ID=CGI_10015942; scaffold34 TRF Tandem_Repeat 270795 270843 89 + . . scaffold34 GLEAN mRNA 270797 270854 0.995008 + . ID=CGI_10015942; scaffold34 TRF Tandem_Repeat 270797 270854 80 + . . scaffold34 GLEAN mRNA 272977 274144 0.995008 + . ID=CGI_10015942; scaffold34 TRF Tandem_Repeat 272977 274144 1425 + . . scaffold34 GLEAN mRNA 272977 275430 0.995008 + . ID=CGI_10015942; scaffold34 TRF Tandem_Repeat 272977 275430 1449 + . . scaffold34 GLEAN mRNA 273740 276140 0.995008 + . ID=CGI_10015942; scaffold34 TRF Tandem_Repeat 273740 276140 1131 + . . scaffold34 GLEAN mRNA 276290 276373 0.995008 + . ID=CGI_10015942; scaffold34 TRF Tandem_Repeat 276290 276373 50 + . . scaffold34 GLEAN mRNA 276350 276441 0.995008 + . ID=CGI_10015942; scaffold34 TRF Tandem_Repeat 276350 276441 53 + . . scaffold34 GLEAN mRNA 290533 290751 0.678889 - . ID=CGI_10015943; scaffold34 WUBlastX DNA_IS4EU 290533 290751 94 - . . scaffold34 GLEAN mRNA 292455 292814 0.678889 - . ID=CGI_10015943; scaffold34 WUBlastX DNA_IS4EU 292455 292814 62 - . . scaffold34 GLEAN mRNA 290723 291523 0.678889 - . ID=CGI_10015943; scaffold34 WUBlastX DNA_IS4EU 290723 291523 400 - . . scaffold34 GLEAN mRNA 368252 368388 0.551846 + . ID=CGI_10015945; scaffold34 TRF Tandem_Repeat 368252 368388 204 + . . scaffold286 GLEAN mRNA 4583 4630 0.682866 - . ID=CGI_10015954; scaffold286 TRF Tandem_Repeat 4583 4630 96 + . . scaffold286 GLEAN mRNA 6874 7107 0.682866 - . ID=CGI_10015954; scaffold286 WUBlastX LINE_L2 6874 7107 95 + . . scaffold286 GLEAN mRNA 71327 71374 0.990881 + . ID=CGI_10015958; scaffold286 TRF Tandem_Repeat 71327 71374 96 + . . scaffold286 GLEAN mRNA 71809 72180 0.990881 + . ID=CGI_10015958; scaffold286 WUBlastX LINE_L1-Tx1 71809 72180 72 - . . scaffold286 GLEAN mRNA 76096 76530 0.990881 + . ID=CGI_10015958; scaffold286 WUBlastX DNA_TcMar-Tc1 76096 76530 219 - . . scaffold286 GLEAN mRNA 75998 76087 0.990881 + . ID=CGI_10015958; scaffold286 WUBlastX DNA_TcMar-Tc1 75998 76087 37 - . . scaffold286 GLEAN mRNA 76530 76964 0.990881 + . ID=CGI_10015958; scaffold286 WUBlastX DNA_TcMar-Tc1 76530 76964 107 - . . scaffold286 GLEAN mRNA 111174 111350 0.984811 - . ID=CGI_10015959; scaffold286 TRF Tandem_Repeat 111174 111350 128 + . . scaffold286 GLEAN mRNA 111351 112483 0.984811 - . ID=CGI_10015959; scaffold286 TRF Tandem_Repeat 111351 112483 1395 + . . scaffold286 GLEAN mRNA 111351 112814 0.984811 - . ID=CGI_10015959; scaffold286 TRF Tandem_Repeat 111351 112814 1477 + . . scaffold286 GLEAN mRNA 112270 112814 0.984811 - . ID=CGI_10015959; scaffold286 TRF Tandem_Repeat 112270 112814 138 + . . scaffold286 GLEAN mRNA 112487 112814 0.984811 - . ID=CGI_10015959; scaffold286 TRF Tandem_Repeat 112487 112814 154 + . . scaffold286 GLEAN mRNA 105583 105765 0.984811 - . ID=CGI_10015959; scaffold286 WUBlastX LINE_RTE-X 105583 105765 73 + . . scaffold286 GLEAN mRNA 102430 103440 0.984811 - . ID=CGI_10015959; scaffold286 WUBlastX LINE_RTE-X 102430 103440 56 + . . scaffold286 GLEAN mRNA 105502 105867 0.984811 - . ID=CGI_10015959; scaffold286 WUBlastX LINE_RTE-X 105502 105867 63 + . . scaffold286 GLEAN mRNA 104479 104985 0.984811 - . ID=CGI_10015959; scaffold286 WUBlastX LINE_RTE-X 104479 104985 104 + . . scaffold286 GLEAN mRNA 103461 103925 0.984811 - . ID=CGI_10015959; scaffold286 WUBlastX LINE_RTE-X 103461 103925 338 + . . scaffold286 GLEAN mRNA 104482 104895 0.984811 - . ID=CGI_10015959; scaffold286 WUBlastX LINE_RTE-X 104482 104895 149 + . . scaffold286 GLEAN mRNA 103928 104506 0.984811 - . ID=CGI_10015959; scaffold286 WUBlastX LINE_RTE-X 103928 104506 350 + . . scaffold286 GLEAN mRNA 103377 103868 0.984811 - . ID=CGI_10015959; scaffold286 WUBlastX LINE_L2 103377 103868 69 + . . scaffold286 GLEAN mRNA 124338 124372 0.984811 - . ID=CGI_10015959; scaffold286 TRF Tandem_Repeat 124338 124372 70 + . . scaffold286 GLEAN mRNA 126510 126563 0.984811 - . ID=CGI_10015959; scaffold286 TRF Tandem_Repeat 126510 126563 108 + . . scaffold286 GLEAN mRNA 131114 131238 0.984811 - . ID=CGI_10015959; scaffold286 TRF Tandem_Repeat 131114 131238 181 + . . scaffold286 GLEAN mRNA 159110 159155 0.543706 - . ID=CGI_10015961; scaffold286 TRF Tandem_Repeat 159110 159155 64 + . . scaffold286 GLEAN mRNA 159114 159154 0.543706 - . ID=CGI_10015961; scaffold286 TRF Tandem_Repeat 159114 159154 66 + . . scaffold286 GLEAN mRNA 155304 155642 0.543706 - . ID=CGI_10015961; scaffold286 WUBlastX DNA_TcMar-Marin 155304 155642 64 + . . scaffold286 GLEAN mRNA 157244 157441 0.543706 - . ID=CGI_10015961; scaffold286 WUBlastX DNA_TcMar-Marin 157244 157441 41 + . . scaffold286 GLEAN mRNA 183393 183893 0.775448 - . ID=CGI_10015964; scaffold286 WUBlastX LTR_Gypsy 183393 183893 134 - . . scaffold286 GLEAN mRNA 183216 183932 0.775448 - . ID=CGI_10015964; scaffold286 WUBlastX LTR_Gypsy 183216 183932 129 - . . scaffold286 GLEAN mRNA 207676 208011 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 207676 208011 173 + . . scaffold286 GLEAN mRNA 208878 209075 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 208878 209075 60 + . . scaffold286 GLEAN mRNA 208534 208731 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 208534 208731 49 + . . scaffold286 GLEAN mRNA 208129 208362 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 208129 208362 67 + . . scaffold286 GLEAN mRNA 208168 208365 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 208168 208365 121 + . . scaffold286 GLEAN mRNA 208522 208674 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 208522 208674 61 + . . scaffold286 GLEAN mRNA 208881 209042 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 208881 209042 84 + . . scaffold286 GLEAN mRNA 209128 209268 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 209128 209268 52 + . . scaffold286 GLEAN mRNA 282687 283715 0.700364 - . ID=CGI_10015966; scaffold286 WUBlastX LTR_Pao 282687 283715 916 - . . scaffold286 GLEAN mRNA 284821 285438 0.700364 - . ID=CGI_10015966; scaffold286 WUBlastX LTR_Pao 284821 285438 442 - . . scaffold286 GLEAN mRNA 283721 284821 0.700364 - . ID=CGI_10015966; scaffold286 WUBlastX LTR_Pao 283721 284821 735 - . . scaffold286 GLEAN mRNA 287296 288240 0.700364 - . ID=CGI_10015966; scaffold286 WUBlastX LTR_Pao 287296 288240 247 - . . scaffold286 GLEAN mRNA 285429 287246 0.700364 - . ID=CGI_10015966; scaffold286 WUBlastX LTR_Pao 285429 287246 1125 - . . scaffold286 GLEAN mRNA 288316 288804 0.700364 - . ID=CGI_10015966; scaffold286 WUBlastX LTR_Pao 288316 288804 83 - . . scaffold286 GLEAN mRNA 288316 288621 0.700364 - . ID=CGI_10015966; scaffold286 WUBlastX LTR_Pao 288316 288621 183 - . . scaffold286 GLEAN mRNA 288283 288570 0.700364 - . ID=CGI_10015966; scaffold286 WUBlastX LTR_Pao 288283 288570 283 - . . scaffold286 GLEAN mRNA 288247 288477 0.700364 - . ID=CGI_10015966; scaffold286 WUBlastX LTR_Pao 288247 288477 124 - . . scaffold286 GLEAN mRNA 341206 342119 0.999577 - . ID=CGI_10015970; scaffold286 TRF Tandem_Repeat 341206 342119 886 + . . scaffold286 GLEAN mRNA 407894 407964 0.511161 + . ID=CGI_10015971; scaffold286 TRF Tandem_Repeat 407894 407964 142 + . . scaffold286 GLEAN mRNA 409828 409875 0.511161 + . ID=CGI_10015971; scaffold286 TRF Tandem_Repeat 409828 409875 96 + . . scaffold286 GLEAN mRNA 435123 435191 0.999999 - . ID=CGI_10015973; scaffold286 WUBlastX DNA_TcMar-Tc1 435123 435191 38 - . . scaffold286 GLEAN mRNA 435099 435179 0.999999 - . ID=CGI_10015973; scaffold286 WUBlastX DNA_TcMar-Tc1 435099 435179 26 - . . scaffold286 GLEAN mRNA 435167 435682 0.999999 - . ID=CGI_10015973; scaffold286 WUBlastX DNA_TcMar-Tc1 435167 435682 161 - . . scaffold286 GLEAN mRNA 434257 434424 0.999999 - . ID=CGI_10015973; scaffold286 WUBlastX DNA_TcMar-Tc1 434257 434424 66 - . . scaffold286 GLEAN mRNA 425797 427145 0.999999 - . ID=CGI_10015973; scaffold286 TRF Tandem_Repeat 425797 427145 916 + . . scaffold286 GLEAN mRNA 425797 427145 0.999999 - . ID=CGI_10015973; scaffold286 TRF Tandem_Repeat 425797 427145 934 + . . scaffold286 GLEAN mRNA 425794 427148 0.999999 - . ID=CGI_10015973; scaffold286 TRF Tandem_Repeat 425794 427148 796 + . . scaffold286 GLEAN mRNA 435123 435191 0.525246 + . ID=CGI_10015974; scaffold286 WUBlastX DNA_TcMar-Tc1 435123 435191 38 - . . scaffold286 GLEAN mRNA 435099 435179 0.525246 + . ID=CGI_10015974; scaffold286 WUBlastX DNA_TcMar-Tc1 435099 435179 26 - . . scaffold286 GLEAN mRNA 435167 435682 0.525246 + . ID=CGI_10015974; scaffold286 WUBlastX DNA_TcMar-Tc1 435167 435682 161 - . . scaffold286 GLEAN mRNA 434257 434424 0.525246 + . ID=CGI_10015974; scaffold286 WUBlastX DNA_TcMar-Tc1 434257 434424 66 - . . scaffold286 GLEAN mRNA 443015 443088 0.525246 + . ID=CGI_10015974; scaffold286 TRF Tandem_Repeat 443015 443088 60 + . . scaffold286 GLEAN mRNA 443018 443072 0.525246 + . ID=CGI_10015974; scaffold286 TRF Tandem_Repeat 443018 443072 74 + . . scaffold286 GLEAN mRNA 443015 443087 0.525246 + . ID=CGI_10015974; scaffold286 TRF Tandem_Repeat 443015 443087 76 + . . scaffold286 GLEAN mRNA 444857 445021 0.525246 + . ID=CGI_10015974; scaffold286 WUBlastX DNA_Harbinger 444857 445021 66 - . . scaffold286 GLEAN mRNA 441313 442817 0.525246 + . ID=CGI_10015974; scaffold286 TRF Tandem_Repeat 441313 442817 2237 + . . scaffold527 GLEAN mRNA 23066 24025 0.586745 + . ID=CGI_10015975; scaffold527 TRF Tandem_Repeat 23066 24025 1277 + . . scaffold527 GLEAN mRNA 35033 35118 0.586745 + . ID=CGI_10015975; scaffold527 TRF Tandem_Repeat 35033 35118 140 + . . scaffold527 GLEAN mRNA 37265 38044 0.586745 + . ID=CGI_10015975; scaffold527 TRF Tandem_Repeat 37265 38044 895 + . . scaffold527 GLEAN mRNA 119714 119872 0.86373 - . ID=CGI_10015978; scaffold527 TRF Tandem_Repeat 119714 119872 282 + . . scaffold527 GLEAN mRNA 123205 123239 0.86373 - . ID=CGI_10015978; scaffold527 TRF Tandem_Repeat 123205 123239 70 + . . scaffold527 GLEAN mRNA 136829 137214 0.86373 - . ID=CGI_10015978; scaffold527 TRF Tandem_Repeat 136829 137214 677 + . . scaffold527 GLEAN mRNA 145425 145649 0.86373 - . ID=CGI_10015978; scaffold527 TRF Tandem_Repeat 145425 145649 378 + . . scaffold527 GLEAN mRNA 148905 148974 0.86373 - . ID=CGI_10015978; scaffold527 TRF Tandem_Repeat 148905 148974 122 + . . scaffold527 GLEAN mRNA 149177 149202 0.86373 - . ID=CGI_10015978; scaffold527 TRF Tandem_Repeat 149177 149202 52 + . . scaffold527 GLEAN mRNA 151789 151829 0.86373 - . ID=CGI_10015978; scaffold527 TRF Tandem_Repeat 151789 151829 82 + . . scaffold527 GLEAN mRNA 173990 174050 1 + . ID=CGI_10015979; scaffold527 TRF Tandem_Repeat 173990 174050 50 + . . scaffold527 GLEAN mRNA 175086 175137 1 + . ID=CGI_10015979; scaffold527 TRF Tandem_Repeat 175086 175137 61 + . . scaffold527 GLEAN mRNA 300761 300851 0.631837 - . ID=CGI_10015982; scaffold527 TRF Tandem_Repeat 300761 300851 146 + . . scaffold527 GLEAN mRNA 342322 342660 0.99883 + . ID=CGI_10015985; scaffold527 TRF Tandem_Repeat 342322 342660 456 + . . scaffold527 GLEAN mRNA 344865 345612 0.99883 + . ID=CGI_10015985; scaffold527 TRF Tandem_Repeat 344865 345612 894 + . . scaffold527 GLEAN mRNA 358365 358499 0.999351 + . ID=CGI_10015987; scaffold527 WUBlastX DNA_hAT-hATw 358365 358499 24 - . . scaffold527 GLEAN mRNA 358665 361106 0.999351 + . ID=CGI_10015987; scaffold527 WUBlastX DNA_hAT-hATw 358665 361106 661 - . . scaffold527 GLEAN mRNA 389439 390423 1 - . ID=CGI_10015990; scaffold527 TRF Tandem_Repeat 389439 390423 1589 + . . scaffold527 GLEAN mRNA 396519 396576 0.99939 + . ID=CGI_10015991; scaffold527 TRF Tandem_Repeat 396519 396576 116 + . . scaffold527 GLEAN mRNA 408080 408117 0.999676 - . ID=CGI_10015992; scaffold527 TRF Tandem_Repeat 408080 408117 67 + . . scaffold527 GLEAN mRNA 408322 409245 0.999676 - . ID=CGI_10015992; scaffold527 TRF Tandem_Repeat 408322 409245 1309 + . . scaffold527 GLEAN mRNA 409876 409955 0.999676 - . ID=CGI_10015992; scaffold527 TRF Tandem_Repeat 409876 409955 128 + . . scaffold527 GLEAN mRNA 410628 410702 0.999676 - . ID=CGI_10015992; scaffold527 TRF Tandem_Repeat 410628 410702 105 + . . scaffold527 GLEAN mRNA 413148 413280 0.999676 - . ID=CGI_10015992; scaffold527 TRF Tandem_Repeat 413148 413280 212 + . . scaffold527 GLEAN mRNA 415418 415451 0.999676 - . ID=CGI_10015992; scaffold527 TRF Tandem_Repeat 415418 415451 68 + . . scaffold719 GLEAN mRNA 8603 8771 0.408992 + . ID=CGI_10015996; scaffold719 TRF Tandem_Repeat 8603 8771 140 + . . scaffold719 GLEAN mRNA 8783 8875 0.408992 + . ID=CGI_10015996; scaffold719 TRF Tandem_Repeat 8783 8875 96 + . . scaffold719 GLEAN mRNA 79016 79070 0.874471 + . ID=CGI_10016001; scaffold719 TRF Tandem_Repeat 79016 79070 56 + . . scaffold719 GLEAN mRNA 79011 79069 0.874471 + . ID=CGI_10016001; scaffold719 TRF Tandem_Repeat 79011 79069 64 + . . scaffold719 GLEAN mRNA 79006 79070 0.874471 + . ID=CGI_10016001; scaffold719 TRF Tandem_Repeat 79006 79070 76 + . . scaffold719 GLEAN mRNA 170061 170107 0.53602 - . ID=CGI_10016002; scaffold719 TRF Tandem_Repeat 170061 170107 55 + . . scaffold719 GLEAN mRNA 170665 172234 0.53602 - . ID=CGI_10016002; scaffold719 TRF Tandem_Repeat 170665 172234 1415 + . . scaffold719 GLEAN mRNA 169331 169657 0.53602 - . ID=CGI_10016002; scaffold719 WUBlastX LINE_L1-Tx1 169331 169657 23 + . . scaffold719 GLEAN mRNA 350223 350417 0.481188 - . ID=CGI_10016007; scaffold719 WUBlastX DNA_MuDR 349866 350474 65 - . . scaffold719 GLEAN mRNA 352022 352177 0.96406 + . ID=CGI_10016008; scaffold719 WUBlastX LTR_Pao 352022 352177 115 + . . scaffold719 GLEAN mRNA 352488 352724 0.96406 + . ID=CGI_10016008; scaffold719 WUBlastX LTR_Pao 352488 352724 152 + . . scaffold719 GLEAN mRNA 352443 352862 0.96406 + . ID=CGI_10016008; scaffold719 WUBlastX LTR_Pao 352443 352862 130 + . . scaffold719 GLEAN mRNA 352263 352724 0.96406 + . ID=CGI_10016008; scaffold719 WUBlastX LTR_Pao 352263 352724 128 + . . scaffold719 GLEAN mRNA 352431 352763 0.96406 + . ID=CGI_10016008; scaffold719 WUBlastX LTR_Pao 352431 352763 136 + . . scaffold719 GLEAN mRNA 352022 352354 0.96406 + . ID=CGI_10016008; scaffold719 WUBlastX LTR_Pao 352022 352354 70 + . . scaffold719 GLEAN mRNA 352494 352769 0.96406 + . ID=CGI_10016008; scaffold719 WUBlastX LTR_Pao 352494 352769 146 + . . scaffold719 GLEAN mRNA 375666 375948 0.96406 + . ID=CGI_10016008; scaffold719 TRF Tandem_Repeat 375666 375948 530 + . . scaffold719 GLEAN mRNA 377827 377875 0.96406 + . ID=CGI_10016008; scaffold719 TRF Tandem_Repeat 377827 377875 98 + . . scaffold719 GLEAN mRNA 386561 386613 0.96406 + . ID=CGI_10016008; scaffold719 TRF Tandem_Repeat 386561 386613 106 + . . scaffold719 GLEAN mRNA 392243 392578 0.96406 + . ID=CGI_10016008; scaffold719 TRF Tandem_Repeat 392243 392578 367 + . . scaffold504 GLEAN mRNA 6656 7234 1 - . ID=CGI_10016012; scaffold504 WUBlastX LTR_Gypsy 6656 7234 86 + . . scaffold504 GLEAN mRNA 6578 7054 1 - . ID=CGI_10016012; scaffold504 WUBlastX LTR_Gypsy 6578 7054 141 + . . scaffold504 GLEAN mRNA 6545 7147 1 - . ID=CGI_10016012; scaffold504 WUBlastX LTR_Gypsy 6545 7147 125 + . . scaffold504 GLEAN mRNA 6346 6660 1 - . ID=CGI_10016012; scaffold504 WUBlastX LTR_Gypsy 6346 6660 73 + . . scaffold504 GLEAN mRNA 6656 7048 1 - . ID=CGI_10016012; scaffold504 WUBlastX LTR_Gypsy 6656 7048 295 + . . scaffold504 GLEAN mRNA 6120 6248 1 - . ID=CGI_10016012; scaffold504 WUBlastX LTR_Gypsy 6120 6248 20 + . . scaffold504 GLEAN mRNA 18696 18729 0.844002 + . ID=CGI_10016013; scaffold504 TRF Tandem_Repeat 18696 18729 68 + . . scaffold504 GLEAN mRNA 18696 18729 0.544851 - . ID=CGI_10016014; scaffold504 TRF Tandem_Repeat 18696 18729 68 + . . scaffold504 GLEAN mRNA 56078 56341 0.999922 - . ID=CGI_10016016; scaffold504 WUBlastX LINE_Penelope 56078 56341 47 - . . scaffold504 GLEAN mRNA 66006 66076 0.999922 - . ID=CGI_10016016; scaffold504 TRF Tandem_Repeat 66006 66076 135 + . . scaffold504 GLEAN mRNA 66679 66838 0.999922 - . ID=CGI_10016016; scaffold504 TRF Tandem_Repeat 66679 66838 241 + . . scaffold504 GLEAN mRNA 83195 83265 0.813305 + . ID=CGI_10016017; scaffold504 TRF Tandem_Repeat 83195 83265 97 + . . scaffold504 GLEAN mRNA 84192 84255 0.813305 + . ID=CGI_10016017; scaffold504 TRF Tandem_Repeat 84192 84255 83 + . . scaffold504 GLEAN mRNA 102582 102803 0.813305 + . ID=CGI_10016017; scaffold504 TRF Tandem_Repeat 102582 102803 243 + . . scaffold504 GLEAN mRNA 113673 114935 0.999999 - . ID=CGI_10016018; scaffold504 WUBlastX LINE_RTE-X 113673 114935 393 + . . scaffold504 GLEAN mRNA 113379 114929 0.999999 - . ID=CGI_10016018; scaffold504 WUBlastX LINE_RTE-X 113379 114929 329 + . . scaffold504 GLEAN mRNA 125170 125265 0.540002 + . ID=CGI_10016019; scaffold504 TRF Tandem_Repeat 125170 125265 93 + . . scaffold504 GLEAN mRNA 125209 125316 0.540002 + . ID=CGI_10016019; scaffold504 TRF Tandem_Repeat 125209 125316 100 + . . scaffold504 GLEAN mRNA 125192 125330 0.540002 + . ID=CGI_10016019; scaffold504 TRF Tandem_Repeat 125192 125330 94 + . . scaffold504 GLEAN mRNA 177047 177403 1 - . ID=CGI_10016023; scaffold504 WUBlastX LINE_L2 177047 177403 103 - . . scaffold504 GLEAN mRNA 177381 177569 1 - . ID=CGI_10016023; scaffold504 WUBlastX LINE_L2 177381 177569 36 - . . scaffold504 GLEAN mRNA 177586 177873 1 - . ID=CGI_10016023; scaffold504 WUBlastX LINE_L2 177586 177873 82 - . . scaffold504 GLEAN mRNA 177574 177912 1 - . ID=CGI_10016023; scaffold504 WUBlastX LINE_L2 177574 177912 42 - . . scaffold504 GLEAN mRNA 194496 194524 0.990713 - . ID=CGI_10016025; scaffold504 TRF Tandem_Repeat 194496 194524 51 + . . scaffold504 GLEAN mRNA 196993 197097 0.990713 - . ID=CGI_10016025; scaffold504 TRF Tandem_Repeat 196993 197097 183 + . . scaffold504 GLEAN mRNA 213400 213514 0.98336 + . ID=CGI_10016026; scaffold504 TRF Tandem_Repeat 213400 213514 178 + . . scaffold504 GLEAN mRNA 212731 213033 0.98336 + . ID=CGI_10016026; scaffold504 WUBlastX LINE_L1 212731 213033 37 + . . scaffold504 GLEAN mRNA 233662 233715 1 - . ID=CGI_10016027; scaffold504 TRF Tandem_Repeat 233662 233715 101 + . . scaffold504 GLEAN mRNA 235906 236277 1 - . ID=CGI_10016027; scaffold504 WUBlastX LINE_RTE-X 235906 236277 100 - . . scaffold504 GLEAN mRNA 236032 236535 1 - . ID=CGI_10016027; scaffold504 WUBlastX LINE_RTE-X 236032 236535 220 - . . scaffold504 GLEAN mRNA 235975 236343 1 - . ID=CGI_10016027; scaffold504 WUBlastX LINE_RTE-X 235975 236343 106 - . . scaffold504 GLEAN mRNA 249144 249523 0.367349 + . ID=CGI_10016028; scaffold504 TRF Tandem_Repeat 249144 249523 460 + . . scaffold504 GLEAN mRNA 254276 254449 0.367349 + . ID=CGI_10016028; scaffold504 WUBlastX LINE_L1 254276 254449 23 - . . scaffold504 GLEAN mRNA 253968 254294 0.367349 + . ID=CGI_10016028; scaffold504 WUBlastX LINE_L2 253968 254294 91 - . . scaffold504 GLEAN mRNA 254354 256138 0.367349 + . ID=CGI_10016028; scaffold504 WUBlastX LINE_L2 254354 256138 1108 - . . scaffold504 GLEAN mRNA 320125 320153 0.989331 - . ID=CGI_10016032; scaffold504 TRF Tandem_Repeat 320125 320153 58 + . . scaffold504 GLEAN mRNA 327076 327129 0.993528 + . ID=CGI_10016034; scaffold504 TRF Tandem_Repeat 327076 327129 74 + . . scaffold504 GLEAN mRNA 328551 329766 0.993528 + . ID=CGI_10016034; scaffold504 TRF Tandem_Repeat 328551 329766 1535 + . . scaffold504 GLEAN mRNA 335221 335268 0.993528 + . ID=CGI_10016034; scaffold504 TRF Tandem_Repeat 335221 335268 89 + . . scaffold1682 GLEAN mRNA 4740 4776 1 + . ID=CGI_10016038; scaffold1682 TRF Tandem_Repeat 4740 4776 74 + . . scaffold1682 GLEAN mRNA 5623 6331 1 + . ID=CGI_10016038; scaffold1682 TRF Tandem_Repeat 5623 6331 790 + . . scaffold1682 GLEAN mRNA 198667 198708 0.316426 - . ID=CGI_10016049; scaffold1682 TRF Tandem_Repeat 198667 198708 50 + . . scaffold1682 GLEAN mRNA 200681 200709 0.316426 - . ID=CGI_10016049; scaffold1682 TRF Tandem_Repeat 200681 200709 58 + . . scaffold1682 GLEAN mRNA 204591 204672 0.316426 - . ID=CGI_10016049; scaffold1682 TRF Tandem_Repeat 204591 204672 146 + . . scaffold1682 GLEAN mRNA 204670 204714 0.316426 - . ID=CGI_10016049; scaffold1682 TRF Tandem_Repeat 204670 204714 72 + . . scaffold1682 GLEAN mRNA 206966 207193 0.316426 - . ID=CGI_10016049; scaffold1682 WUBlastX LINE_RTE-X 206966 207193 25 + . . scaffold1682 GLEAN mRNA 206377 206724 0.316426 - . ID=CGI_10016049; scaffold1682 WUBlastX LINE_RTE-X 206377 206724 58 + . . scaffold1682 GLEAN mRNA 206326 206649 0.316426 - . ID=CGI_10016049; scaffold1682 WUBlastX LINE_L2 206326 206649 80 + . . scaffold1682 GLEAN mRNA 207059 207241 0.316426 - . ID=CGI_10016049; scaffold1682 WUBlastX LINE_RTE-X 207059 207241 22 + . . scaffold1682 GLEAN mRNA 230548 231587 0.316426 - . ID=CGI_10016049; scaffold1682 TRF Tandem_Repeat 230548 231587 1386 + . . scaffold1682 GLEAN mRNA 230294 231607 0.316426 - . ID=CGI_10016049; scaffold1682 TRF Tandem_Repeat 230294 231607 1750 + . . scaffold1682 GLEAN mRNA 346363 346387 0.98321 - . ID=CGI_10016052; scaffold1682 TRF Tandem_Repeat 346363 346387 50 + . . scaffold1682 GLEAN mRNA 414638 414682 0.701631 - . ID=CGI_10016056; scaffold1682 TRF Tandem_Repeat 414638 414682 90 + . . scaffold1682 GLEAN mRNA 425662 425901 0.325277 - . ID=CGI_10016058; scaffold1682 WUBlastX LTR_Ngaro 425662 425901 85 - . . scaffold1682 GLEAN mRNA 425384 425620 0.325277 - . ID=CGI_10016058; scaffold1682 WUBlastX LTR_Ngaro 425384 425620 48 - . . scaffold1682 GLEAN mRNA 449114 449317 1 - . ID=CGI_10016060; scaffold1682 WUBlastX DNA_TcMar-Marin 449114 449317 49 + . . scaffold1682 GLEAN mRNA 448578 448763 1 - . ID=CGI_10016060; scaffold1682 WUBlastX DNA_TcMar-Marin 448578 448763 32 + . . scaffold1682 GLEAN mRNA 448617 448751 1 - . ID=CGI_10016060; scaffold1682 WUBlastX DNA_TcMar-Marin 448617 448751 57 + . . scaffold1682 GLEAN mRNA 448820 449266 1 - . ID=CGI_10016060; scaffold1682 WUBlastX DNA_TcMar-Marin 448820 449266 33 + . . scaffold177 GLEAN mRNA 260000 260024 0.498178 - . ID=CGI_10016064; scaffold177 TRF Tandem_Repeat 260000 260024 50 + . . scaffold177 GLEAN mRNA 268719 268781 0.498178 - . ID=CGI_10016064; scaffold177 TRF Tandem_Repeat 268719 268781 126 + . . scaffold177 GLEAN mRNA 276417 276650 0.498178 - . ID=CGI_10016064; scaffold177 TRF Tandem_Repeat 276417 276650 283 + . . scaffold177 GLEAN mRNA 285593 285625 0.498178 - . ID=CGI_10016064; scaffold177 TRF Tandem_Repeat 285593 285625 52 + . . scaffold177 GLEAN mRNA 293618 293671 0.498178 - . ID=CGI_10016064; scaffold177 TRF Tandem_Repeat 293618 293671 56 + . . scaffold177 GLEAN mRNA 293621 293670 0.498178 - . ID=CGI_10016064; scaffold177 TRF Tandem_Repeat 293621 293670 50 + . . scaffold177 GLEAN mRNA 283562 283834 0.498178 - . ID=CGI_10016064; scaffold177 WUBlastX DNA_Harbinger 283562 283834 45 - . . scaffold177 GLEAN mRNA 283628 283807 0.498178 - . ID=CGI_10016064; scaffold177 WUBlastX DNA_Harbinger 283628 283807 72 - . . scaffold177 GLEAN mRNA 284880 285107 0.498178 - . ID=CGI_10016064; scaffold177 WUBlastX DNA_Harbinger 284880 285107 60 - . . scaffold177 GLEAN mRNA 285109 285282 0.498178 - . ID=CGI_10016064; scaffold177 WUBlastX DNA_Harbinger 285109 285282 42 - . . scaffold177 GLEAN mRNA 284736 285125 0.498178 - . ID=CGI_10016064; scaffold177 WUBlastX DNA_Harbinger 284736 285125 50 - . . scaffold177 GLEAN mRNA 284677 284724 0.498178 - . ID=CGI_10016064; scaffold177 WUBlastX DNA_Harbinger 284677 284724 32 - . . scaffold177 GLEAN mRNA 284880 284993 0.498178 - . ID=CGI_10016064; scaffold177 WUBlastX DNA_Harbinger 284880 284993 73 - . . scaffold177 GLEAN mRNA 298129 298166 0.498178 - . ID=CGI_10016064; scaffold177 TRF Tandem_Repeat 298129 298166 51 + . . scaffold177 GLEAN mRNA 307581 307643 0.999349 - . ID=CGI_10016066; scaffold177 TRF Tandem_Repeat 307581 307643 126 + . . scaffold177 GLEAN mRNA 317127 317927 0.999349 - . ID=CGI_10016066; scaffold177 WUBlastX LINE_L2 317127 317927 52 + . . scaffold177 GLEAN mRNA 317031 317732 0.999349 - . ID=CGI_10016066; scaffold177 WUBlastX LINE_L1 317031 317732 80 + . . scaffold177 GLEAN mRNA 385484 385687 0.999998 + . ID=CGI_10016067; scaffold177 WUBlastX LTR_Pao 385484 385687 21 + . . scaffold177 GLEAN mRNA 389629 389731 0.987366 - . ID=CGI_10016068; scaffold177 WUBlastX LTR_Pao 389129 389731 123 + . . scaffold177 GLEAN mRNA 407213 407278 0.558382 + . ID=CGI_10016069; scaffold177 TRF Tandem_Repeat 407213 407278 132 + . . scaffold177 GLEAN mRNA 417388 417412 0.999988 - . ID=CGI_10016070; scaffold177 TRF Tandem_Repeat 417388 417412 50 + . . scaffold177 GLEAN mRNA 421207 421275 0.811455 + . ID=CGI_10016071; scaffold177 TRF Tandem_Repeat 421207 421275 79 + . . scaffold177 GLEAN mRNA 422063 422406 0.811455 + . ID=CGI_10016071; scaffold177 TRF Tandem_Repeat 422063 422406 210 + . . scaffold562 GLEAN mRNA 133666 133711 0.558182 + . ID=CGI_10016079; scaffold562 TRF Tandem_Repeat 133666 133711 51 + . . scaffold562 GLEAN mRNA 233585 233639 0.754735 + . ID=CGI_10016086; scaffold562 TRF Tandem_Repeat 233585 233639 110 + . . scaffold562 GLEAN mRNA 284774 284899 0.448852 + . ID=CGI_10016091; scaffold562 TRF Tandem_Repeat 284774 284899 141 + . . scaffold562 GLEAN mRNA 284774 284899 0.448852 + . ID=CGI_10016091; scaffold562 TRF Tandem_Repeat 284774 284899 166 + . . scaffold562 GLEAN mRNA 285144 285182 0.448852 + . ID=CGI_10016091; scaffold562 TRF Tandem_Repeat 285144 285182 78 + . . scaffold562 GLEAN mRNA 286099 286134 0.448852 + . ID=CGI_10016091; scaffold562 TRF Tandem_Repeat 286099 286134 72 + . . scaffold562 GLEAN mRNA 286379 286514 0.448852 + . ID=CGI_10016091; scaffold562 TRF Tandem_Repeat 286379 286514 147 + . . scaffold562 GLEAN mRNA 286379 286514 0.448852 + . ID=CGI_10016091; scaffold562 TRF Tandem_Repeat 286379 286514 175 + . . scaffold562 GLEAN mRNA 288884 288989 0.448852 + . ID=CGI_10016091; scaffold562 TRF Tandem_Repeat 288884 288989 167 + . . scaffold562 GLEAN mRNA 296903 297091 0.448852 + . ID=CGI_10016091; scaffold562 WUBlastX LINE_CR1-L2 296903 297091 70 - . . scaffold562 GLEAN mRNA 307660 307742 0.75511 + . ID=CGI_10016093; scaffold562 TRF Tandem_Repeat 307660 307742 130 + . . scaffold562 GLEAN mRNA 308575 308612 0.75511 + . ID=CGI_10016093; scaffold562 TRF Tandem_Repeat 308575 308612 51 + . . scaffold562 GLEAN mRNA 324202 325850 1 - . ID=CGI_10016097; scaffold562 TRF Tandem_Repeat 324202 325850 2089 + . . scaffold562 GLEAN mRNA 336624 337495 0.434141 + . ID=CGI_10016098; scaffold562 TRF Tandem_Repeat 336624 337495 1268 + . . scaffold562 GLEAN mRNA 355095 355124 0.500732 + . ID=CGI_10016100; scaffold562 TRF Tandem_Repeat 355095 355124 60 + . . scaffold562 GLEAN mRNA 363519 363566 0.500732 + . ID=CGI_10016100; scaffold562 TRF Tandem_Repeat 363519 363566 96 + . . scaffold562 GLEAN mRNA 396018 396062 0.999676 + . ID=CGI_10016101; scaffold562 TRF Tandem_Repeat 396018 396062 90 + . . scaffold835 GLEAN mRNA 4781 4816 0.5 - . ID=CGI_10016102; scaffold835 TRF Tandem_Repeat 4781 4816 63 + . . scaffold835 GLEAN mRNA 79529 79591 0.636487 - . ID=CGI_10016106; scaffold835 TRF Tandem_Repeat 79529 79591 126 + . . scaffold835 GLEAN mRNA 79982 80053 0.636487 - . ID=CGI_10016106; scaffold835 TRF Tandem_Repeat 79982 80053 96 + . . scaffold835 GLEAN mRNA 85194 86260 0.636487 - . ID=CGI_10016106; scaffold835 TRF Tandem_Repeat 85194 86260 1431 + . . scaffold835 GLEAN mRNA 112759 112814 0.463195 + . ID=CGI_10016108; scaffold835 TRF Tandem_Repeat 112759 112814 112 + . . scaffold835 GLEAN mRNA 112814 112845 0.463195 + . ID=CGI_10016108; scaffold835 TRF Tandem_Repeat 112814 112845 64 + . . scaffold835 GLEAN mRNA 139855 139884 0.998976 - . ID=CGI_10016109; scaffold835 TRF Tandem_Repeat 139855 139884 51 + . . scaffold835 GLEAN mRNA 152968 153189 0.998976 - . ID=CGI_10016109; scaffold835 TRF Tandem_Repeat 152968 153189 313 + . . scaffold835 GLEAN mRNA 177405 177450 0.998976 - . ID=CGI_10016109; scaffold835 TRF Tandem_Repeat 177405 177450 92 + . . scaffold835 GLEAN mRNA 210810 211259 0.998234 - . ID=CGI_10016113; scaffold835 WUBlastX LINE_L1 210810 211259 23 - . . scaffold835 GLEAN mRNA 333061 333129 0.999674 - . ID=CGI_10016121; scaffold835 TRF Tandem_Repeat 333061 333129 58 + . . scaffold835 GLEAN mRNA 417116 417163 1 + . ID=CGI_10016122; scaffold835 TRF Tandem_Repeat 417116 417163 96 + . . scaffold835 GLEAN mRNA 417116 417163 0.987617 - . ID=CGI_10016123; scaffold835 TRF Tandem_Repeat 417116 417163 96 + . . scaffold564 GLEAN mRNA 83811 83848 0.622128 + . ID=CGI_10016127; scaffold564 TRF Tandem_Repeat 83811 83848 58 + . . scaffold564 GLEAN mRNA 85555 85650 0.622128 + . ID=CGI_10016127; scaffold564 TRF Tandem_Repeat 85555 85650 174 + . . scaffold564 GLEAN mRNA 86379 86438 0.622128 + . ID=CGI_10016127; scaffold564 TRF Tandem_Repeat 86379 86438 84 + . . scaffold564 GLEAN mRNA 86370 86438 0.622128 + . ID=CGI_10016127; scaffold564 TRF Tandem_Repeat 86370 86438 93 + . . scaffold564 GLEAN mRNA 87506 87537 0.622128 + . ID=CGI_10016127; scaffold564 TRF Tandem_Repeat 87506 87537 64 + . . scaffold564 GLEAN mRNA 93219 93277 0.622128 + . ID=CGI_10016127; scaffold564 TRF Tandem_Repeat 93219 93277 118 + . . scaffold564 GLEAN mRNA 94261 94524 0.622128 + . ID=CGI_10016127; scaffold564 TRF Tandem_Repeat 94261 94524 433 + . . scaffold564 GLEAN mRNA 96513 96799 0.622128 + . ID=CGI_10016127; scaffold564 TRF Tandem_Repeat 96513 96799 288 + . . scaffold564 GLEAN mRNA 96419 96730 0.622128 + . ID=CGI_10016127; scaffold564 TRF Tandem_Repeat 96419 96730 256 + . . scaffold564 GLEAN mRNA 103855 103900 0.622128 + . ID=CGI_10016127; scaffold564 TRF Tandem_Repeat 103855 103900 92 + . . scaffold564 GLEAN mRNA 103923 104046 0.622128 + . ID=CGI_10016127; scaffold564 TRF Tandem_Repeat 103923 104046 59 + . . scaffold564 GLEAN mRNA 109921 110124 0.999949 + . ID=CGI_10016128; scaffold564 TRF Tandem_Repeat 109921 110124 236 + . . scaffold564 GLEAN mRNA 110357 110496 0.999949 + . ID=CGI_10016128; scaffold564 TRF Tandem_Repeat 110357 110496 113 + . . scaffold564 GLEAN mRNA 244342 244391 0.999846 + . ID=CGI_10016135; scaffold564 TRF Tandem_Repeat 244342 244391 100 + . . scaffold564 GLEAN mRNA 245299 245340 0.999846 + . ID=CGI_10016135; scaffold564 TRF Tandem_Repeat 245299 245340 84 + . . scaffold564 GLEAN mRNA 264932 264968 0.224773 + . ID=CGI_10016138; scaffold564 TRF Tandem_Repeat 264932 264968 56 + . . scaffold564 GLEAN mRNA 280910 281305 0.224773 + . ID=CGI_10016138; scaffold564 TRF Tandem_Repeat 280910 281305 464 + . . scaffold564 GLEAN mRNA 264932 264968 0.482674 - . ID=CGI_10016139; scaffold564 TRF Tandem_Repeat 264932 264968 56 + . . scaffold564 GLEAN mRNA 288081 288166 0.999676 - . ID=CGI_10016140; scaffold564 TRF Tandem_Repeat 288081 288166 100 + . . scaffold564 GLEAN mRNA 297891 297936 0.484577 + . ID=CGI_10016141; scaffold564 TRF Tandem_Repeat 297891 297936 92 + . . scaffold564 GLEAN mRNA 336524 337070 1 - . ID=CGI_10016146; scaffold564 TRF Tandem_Repeat 336524 337070 532 + . . scaffold564 GLEAN mRNA 336591 337070 1 - . ID=CGI_10016146; scaffold564 TRF Tandem_Repeat 336591 337070 521 + . . scaffold564 GLEAN mRNA 337217 337790 1 - . ID=CGI_10016146; scaffold564 TRF Tandem_Repeat 337217 337790 815 + . . scaffold564 GLEAN mRNA 337220 337790 1 - . ID=CGI_10016146; scaffold564 TRF Tandem_Repeat 337220 337790 831 + . . scaffold564 GLEAN mRNA 349550 349647 1 - . ID=CGI_10016146; scaffold564 TRF Tandem_Repeat 349550 349647 142 + . . scaffold564 GLEAN mRNA 365119 365920 0.572149 + . ID=CGI_10016147; scaffold564 TRF Tandem_Repeat 365119 365920 845 + . . scaffold564 GLEAN mRNA 365127 365920 0.572149 + . ID=CGI_10016147; scaffold564 TRF Tandem_Repeat 365127 365920 874 + . . scaffold564 GLEAN mRNA 366272 367239 0.572149 + . ID=CGI_10016147; scaffold564 TRF Tandem_Repeat 366272 367239 1164 + . . scaffold564 GLEAN mRNA 421542 421586 0.589775 - . ID=CGI_10016149; scaffold564 TRF Tandem_Repeat 421542 421586 90 + . . scaffold564 GLEAN mRNA 421806 421835 0.589775 - . ID=CGI_10016149; scaffold564 TRF Tandem_Repeat 421806 421835 51 + . . scaffold564 GLEAN mRNA 433266 433350 0.589775 - . ID=CGI_10016149; scaffold564 TRF Tandem_Repeat 433266 433350 129 + . . scaffold564 GLEAN mRNA 434818 434939 0.589775 - . ID=CGI_10016149; scaffold564 TRF Tandem_Repeat 434818 434939 226 + . . scaffold564 GLEAN mRNA 438585 438631 0.589775 - . ID=CGI_10016149; scaffold564 TRF Tandem_Repeat 438585 438631 67 + . . scaffold44054 GLEAN mRNA 37483 37830 0.999949 - . ID=CGI_10016153; scaffold44054 TRF Tandem_Repeat 37483 37830 662 + . . scaffold44054 GLEAN mRNA 41746 42294 0.999949 - . ID=CGI_10016153; scaffold44054 TRF Tandem_Repeat 41746 42294 782 + . . scaffold44054 GLEAN mRNA 42411 42607 0.999949 - . ID=CGI_10016153; scaffold44054 TRF Tandem_Repeat 42411 42607 187 + . . scaffold44054 GLEAN mRNA 43017 43162 0.999949 - . ID=CGI_10016153; scaffold44054 TRF Tandem_Repeat 43017 43162 150 + . . scaffold44054 GLEAN mRNA 43472 43881 0.999949 - . ID=CGI_10016153; scaffold44054 TRF Tandem_Repeat 43472 43881 703 + . . scaffold44054 GLEAN mRNA 43386 43881 0.999949 - . ID=CGI_10016153; scaffold44054 TRF Tandem_Repeat 43386 43881 796 + . . scaffold44054 GLEAN mRNA 45237 45292 0.999949 - . ID=CGI_10016153; scaffold44054 TRF Tandem_Repeat 45237 45292 58 + . . scaffold44054 GLEAN mRNA 72031 72414 0.999106 - . ID=CGI_10016156; scaffold44054 WUBlastX DNA_Kolobok-Hyd 72031 72432 27 - . . scaffold44054 GLEAN mRNA 75428 75456 0.974222 - . ID=CGI_10016157; scaffold44054 TRF Tandem_Repeat 75428 75456 58 + . . scaffold44054 GLEAN mRNA 73388 73603 0.974222 - . ID=CGI_10016157; scaffold44054 WUBlastX DNA_Kolobok-Hyd 73388 73603 31 - . . scaffold44054 GLEAN mRNA 123713 123928 0.995064 - . ID=CGI_10016158; scaffold44054 TRF Tandem_Repeat 123713 123928 163 + . . scaffold44054 GLEAN mRNA 163955 165339 0.620542 + . ID=CGI_10016160; scaffold44054 TRF Tandem_Repeat 163955 165339 1367 + . . scaffold44054 GLEAN mRNA 166354 166579 0.620542 + . ID=CGI_10016160; scaffold44054 TRF Tandem_Repeat 166354 166579 344 + . . scaffold44054 GLEAN mRNA 189302 189844 0.811543 + . ID=CGI_10016161; scaffold44054 TRF Tandem_Repeat 189302 189844 872 + . . scaffold44054 GLEAN mRNA 192735 192764 1 + . ID=CGI_10016162; scaffold44054 TRF Tandem_Repeat 192735 192764 51 + . . scaffold44054 GLEAN mRNA 193653 195581 1 + . ID=CGI_10016162; scaffold44054 TRF Tandem_Repeat 193653 195581 2498 + . . scaffold44054 GLEAN mRNA 203805 204301 1 + . ID=CGI_10016162; scaffold44054 TRF Tandem_Repeat 203805 204301 868 + . . scaffold44054 GLEAN mRNA 220321 220566 0.531587 - . ID=CGI_10016164; scaffold44054 WUBlastX DNA_hAT 220321 220566 63 - . . scaffold44054 GLEAN mRNA 260376 260451 0.889923 + . ID=CGI_10016168; scaffold44054 TRF Tandem_Repeat 260376 260451 57 + . . scaffold44054 GLEAN mRNA 295328 295486 0.577406 - . ID=CGI_10016170; scaffold44054 TRF Tandem_Repeat 295328 295486 184 + . . scaffold44054 GLEAN mRNA 300510 300557 0.577406 - . ID=CGI_10016170; scaffold44054 TRF Tandem_Repeat 300510 300557 51 + . . scaffold44054 GLEAN mRNA 300513 300557 0.577406 - . ID=CGI_10016170; scaffold44054 TRF Tandem_Repeat 300513 300557 72 + . . scaffold44054 GLEAN mRNA 303083 303138 0.577406 - . ID=CGI_10016170; scaffold44054 TRF Tandem_Repeat 303083 303138 105 + . . scaffold44054 GLEAN mRNA 309507 310780 0.999734 + . ID=CGI_10016171; scaffold44054 TRF Tandem_Repeat 309507 310780 1517 + . . scaffold44054 GLEAN mRNA 307502 307654 0.999734 + . ID=CGI_10016171; scaffold44054 WUBlastX LINE_RTE-X 307502 307654 75 - . . scaffold44054 GLEAN mRNA 307454 307654 0.999734 + . ID=CGI_10016171; scaffold44054 WUBlastX LINE_RTE-X 307454 307654 67 - . . scaffold44054 GLEAN mRNA 307400 307654 0.999734 + . ID=CGI_10016171; scaffold44054 WUBlastX LINE_RTE-X 307400 307654 49 - . . scaffold44054 GLEAN mRNA 307502 307684 0.999734 + . ID=CGI_10016171; scaffold44054 WUBlastX LINE_RTE-X 307502 307684 56 - . . scaffold44054 GLEAN mRNA 312158 312794 0.999734 + . ID=CGI_10016171; scaffold44054 TRF Tandem_Repeat 312158 312794 585 + . . scaffold44054 GLEAN mRNA 324864 324973 0.999917 - . ID=CGI_10016172; scaffold44054 TRF Tandem_Repeat 324864 324973 211 + . . scaffold44054 GLEAN mRNA 328288 328523 0.999917 - . ID=CGI_10016172; scaffold44054 TRF Tandem_Repeat 328288 328523 346 + . . scaffold44054 GLEAN mRNA 328904 329081 0.999917 - . ID=CGI_10016172; scaffold44054 TRF Tandem_Repeat 328904 329081 133 + . . scaffold44054 GLEAN mRNA 331598 332729 0.999917 - . ID=CGI_10016172; scaffold44054 TRF Tandem_Repeat 331598 332729 1012 + . . scaffold44054 GLEAN mRNA 338348 338578 0.959374 + . ID=CGI_10016173; scaffold44054 TRF Tandem_Repeat 338348 338578 304 + . . scaffold44054 GLEAN mRNA 372137 372181 0.888316 - . ID=CGI_10016175; scaffold44054 TRF Tandem_Repeat 372137 372181 90 + . . scaffold44054 GLEAN mRNA 400810 400887 0.999676 + . ID=CGI_10016178; scaffold44054 TRF Tandem_Repeat 400810 400887 156 + . . scaffold44054 GLEAN mRNA 401092 401487 0.999676 + . ID=CGI_10016178; scaffold44054 TRF Tandem_Repeat 401092 401487 594 + . . scaffold44054 GLEAN mRNA 436541 436584 0.884147 - . ID=CGI_10016180; scaffold44054 TRF Tandem_Repeat 436541 436584 88 + . . scaffold44054 GLEAN mRNA 440828 440884 0.884147 - . ID=CGI_10016180; scaffold44054 TRF Tandem_Repeat 440828 440884 114 + . . scaffold44054 GLEAN mRNA 428916 429017 0.884147 - . ID=CGI_10016180; scaffold44054 WUBlastX DNA_IS4EU 428916 429017 27 - . . scaffold44054 GLEAN mRNA 428880 429017 0.884147 - . ID=CGI_10016180; scaffold44054 WUBlastX DNA_P 428880 429017 25 - . . scaffold324 GLEAN mRNA 118 158 0.999676 + . ID=CGI_10016182; scaffold324 TRF Tandem_Repeat 118 158 55 + . . scaffold324 GLEAN mRNA 18773 18829 0.99924 + . ID=CGI_10016183; scaffold324 TRF Tandem_Repeat 18773 18829 105 + . . scaffold324 GLEAN mRNA 18897 18967 0.99924 + . ID=CGI_10016183; scaffold324 TRF Tandem_Repeat 18897 18967 53 + . . scaffold324 GLEAN mRNA 18880 18946 0.99924 + . ID=CGI_10016183; scaffold324 TRF Tandem_Repeat 18880 18946 59 + . . scaffold324 GLEAN mRNA 36344 36436 0.99924 + . ID=CGI_10016183; scaffold324 TRF Tandem_Repeat 36344 36436 100 + . . scaffold324 GLEAN mRNA 39940 39966 0.99924 + . ID=CGI_10016183; scaffold324 TRF Tandem_Repeat 39940 39966 54 + . . scaffold324 GLEAN mRNA 41848 41889 0.99924 + . ID=CGI_10016183; scaffold324 TRF Tandem_Repeat 41848 41889 50 + . . scaffold324 GLEAN mRNA 89650 89688 0.84635 + . ID=CGI_10016186; scaffold324 TRF Tandem_Repeat 89650 89688 78 + . . scaffold324 GLEAN mRNA 89687 89721 0.84635 + . ID=CGI_10016186; scaffold324 TRF Tandem_Repeat 89687 89721 70 + . . scaffold324 GLEAN mRNA 102718 102759 0.543376 + . ID=CGI_10016187; scaffold324 TRF Tandem_Repeat 102718 102759 84 + . . scaffold324 GLEAN mRNA 150146 150290 1 + . ID=CGI_10016190; scaffold324 TRF Tandem_Repeat 150146 150290 209 + . . scaffold324 GLEAN mRNA 179534 179572 0.700799 - . ID=CGI_10016191; scaffold324 TRF Tandem_Repeat 179534 179572 78 + . . scaffold324 GLEAN mRNA 183765 183821 1 + . ID=CGI_10016192; scaffold324 TRF Tandem_Repeat 183765 183821 68 + . . scaffold324 GLEAN mRNA 218434 218499 0.999676 + . ID=CGI_10016195; scaffold324 TRF Tandem_Repeat 218434 218499 116 + . . scaffold324 GLEAN mRNA 218435 218496 0.999676 + . ID=CGI_10016195; scaffold324 TRF Tandem_Repeat 218435 218496 72 + . . scaffold324 GLEAN mRNA 224701 224787 1 + . ID=CGI_10016196; scaffold324 TRF Tandem_Repeat 224701 224787 104 + . . scaffold324 GLEAN mRNA 224873 225002 1 + . ID=CGI_10016196; scaffold324 TRF Tandem_Repeat 224873 225002 172 + . . scaffold324 GLEAN mRNA 224879 225050 1 + . ID=CGI_10016196; scaffold324 TRF Tandem_Repeat 224879 225050 168 + . . scaffold324 GLEAN mRNA 225062 225239 1 + . ID=CGI_10016196; scaffold324 TRF Tandem_Repeat 225062 225239 248 + . . scaffold324 GLEAN mRNA 268152 268204 1 + . ID=CGI_10016200; scaffold324 TRF Tandem_Repeat 268152 268204 99 + . . scaffold324 GLEAN mRNA 269375 269424 1 + . ID=CGI_10016200; scaffold324 TRF Tandem_Repeat 269375 269424 84 + . . scaffold324 GLEAN mRNA 272131 272185 1 + . ID=CGI_10016200; scaffold324 TRF Tandem_Repeat 272131 272185 101 + . . scaffold324 GLEAN mRNA 301122 301733 0.620588 + . ID=CGI_10016201; scaffold324 TRF Tandem_Repeat 301122 301733 830 + . . scaffold324 GLEAN mRNA 310730 310878 0.620588 + . ID=CGI_10016201; scaffold324 TRF Tandem_Repeat 310730 310878 123 + . . scaffold324 GLEAN mRNA 339624 339677 0.999529 + . ID=CGI_10016203; scaffold324 TRF Tandem_Repeat 339624 339677 108 + . . scaffold588 GLEAN mRNA 11495 12233 0.999942 + . ID=CGI_10016208; scaffold588 TRF Tandem_Repeat 11495 12233 802 + . . scaffold588 GLEAN mRNA 20636 20675 0.999942 + . ID=CGI_10016208; scaffold588 TRF Tandem_Repeat 20636 20675 80 + . . scaffold588 GLEAN mRNA 23307 23684 0.999942 + . ID=CGI_10016208; scaffold588 WUBlastX DNA_Harbinger 23307 23684 93 + . . scaffold588 GLEAN mRNA 23489 23953 0.999942 + . ID=CGI_10016208; scaffold588 WUBlastX DNA_Harbinger 23489 23953 112 + . . scaffold588 GLEAN mRNA 23030 23107 0.999942 + . ID=CGI_10016208; scaffold588 WUBlastX DNA_Harbinger 23030 23107 55 + . . scaffold588 GLEAN mRNA 23119 23352 0.999942 + . ID=CGI_10016208; scaffold588 WUBlastX DNA_Harbinger 23119 23352 178 + . . scaffold588 GLEAN mRNA 41422 41462 0.701659 + . ID=CGI_10016209; scaffold588 TRF Tandem_Repeat 41422 41462 82 + . . scaffold588 GLEAN mRNA 43842 43886 0.701659 + . ID=CGI_10016209; scaffold588 TRF Tandem_Repeat 43842 43886 72 + . . scaffold588 GLEAN mRNA 46052 46093 0.701659 + . ID=CGI_10016209; scaffold588 TRF Tandem_Repeat 46052 46093 84 + . . scaffold588 GLEAN mRNA 49234 49276 0.701659 + . ID=CGI_10016209; scaffold588 TRF Tandem_Repeat 49234 49276 50 + . . scaffold588 GLEAN mRNA 67275 67312 0.701659 + . ID=CGI_10016209; scaffold588 TRF Tandem_Repeat 67275 67312 76 + . . scaffold588 GLEAN mRNA 72036 72578 0.701659 + . ID=CGI_10016209; scaffold588 WUBlastX LINE_L2 72036 72578 264 + . . scaffold588 GLEAN mRNA 71973 72635 0.701659 + . ID=CGI_10016209; scaffold588 WUBlastX LINE_L2 71973 72635 38 + . . scaffold588 GLEAN mRNA 145921 146382 0.82921 + . ID=CGI_10016211; scaffold588 WUBlastX LINE_Penelope 145921 146382 45 - . . scaffold588 GLEAN mRNA 146002 146439 0.82921 + . ID=CGI_10016211; scaffold588 WUBlastX LINE_Penelope 146002 146439 84 - . . scaffold588 GLEAN mRNA 135001 135852 0.82921 + . ID=CGI_10016211; scaffold588 WUBlastX DNA_Harbinger 135001 135852 440 + . . scaffold588 GLEAN mRNA 146429 146662 0.82921 + . ID=CGI_10016211; scaffold588 WUBlastX LINE_Penelope 146429 146662 66 - . . scaffold588 GLEAN mRNA 145993 146373 0.82921 + . ID=CGI_10016211; scaffold588 WUBlastX LINE_Penelope 145993 146373 203 - . . scaffold588 GLEAN mRNA 146468 146650 0.82921 + . ID=CGI_10016211; scaffold588 WUBlastX LINE_Penelope 146468 146650 81 - . . scaffold588 GLEAN mRNA 135034 136002 0.82921 + . ID=CGI_10016211; scaffold588 WUBlastX DNA_Harbinger 135034 136002 338 + . . scaffold588 GLEAN mRNA 134415 134600 0.82921 + . ID=CGI_10016211; scaffold588 WUBlastX LINE_Penelope 134415 134600 39 - . . scaffold588 GLEAN mRNA 150920 151417 0.82921 + . ID=CGI_10016211; scaffold588 WUBlastX LINE_L1-Tx1 150920 151417 106 - . . scaffold588 GLEAN mRNA 151530 152063 0.82921 + . ID=CGI_10016211; scaffold588 WUBlastX LINE_L1 151530 152063 93 - . . scaffold588 GLEAN mRNA 151758 152042 0.82921 + . ID=CGI_10016211; scaffold588 WUBlastX LINE_L1-Tx1 151758 152042 183 - . . scaffold588 GLEAN mRNA 151151 151471 0.82921 + . ID=CGI_10016211; scaffold588 WUBlastX LINE_L1 151151 151471 75 - . . scaffold588 GLEAN mRNA 151788 152114 0.82921 + . ID=CGI_10016211; scaffold588 WUBlastX LINE_L1 151788 152114 97 - . . scaffold588 GLEAN mRNA 237343 237376 0.99937 - . ID=CGI_10016217; scaffold588 TRF Tandem_Repeat 237343 237376 50 + . . scaffold588 GLEAN mRNA 242048 242101 0.99937 - . ID=CGI_10016217; scaffold588 TRF Tandem_Repeat 242048 242101 63 + . . scaffold588 GLEAN mRNA 244243 244416 0.99937 - . ID=CGI_10016217; scaffold588 TRF Tandem_Repeat 244243 244416 246 + . . scaffold588 GLEAN mRNA 257882 257933 0.997309 - . ID=CGI_10016218; scaffold588 TRF Tandem_Repeat 257882 257933 61 + . . scaffold588 GLEAN mRNA 257882 257933 0.997309 - . ID=CGI_10016218; scaffold588 TRF Tandem_Repeat 257882 257933 61 + . . scaffold588 GLEAN mRNA 257882 257933 0.997309 - . ID=CGI_10016218; scaffold588 TRF Tandem_Repeat 257882 257933 61 + . . scaffold588 GLEAN mRNA 257883 257953 0.997309 - . ID=CGI_10016218; scaffold588 TRF Tandem_Repeat 257883 257953 56 + . . scaffold588 GLEAN mRNA 257883 257945 0.997309 - . ID=CGI_10016218; scaffold588 TRF Tandem_Repeat 257883 257945 54 + . . scaffold588 GLEAN mRNA 258808 258855 0.997309 - . ID=CGI_10016218; scaffold588 TRF Tandem_Repeat 258808 258855 71 + . . scaffold588 GLEAN mRNA 271415 271491 0.862886 - . ID=CGI_10016219; scaffold588 TRF Tandem_Repeat 271415 271491 118 + . . scaffold588 GLEAN mRNA 271412 271485 0.862886 - . ID=CGI_10016219; scaffold588 TRF Tandem_Repeat 271412 271485 112 + . . scaffold588 GLEAN mRNA 280635 280698 0.862886 - . ID=CGI_10016219; scaffold588 TRF Tandem_Repeat 280635 280698 65 + . . scaffold588 GLEAN mRNA 368391 368463 0.183595 - . ID=CGI_10016222; scaffold588 TRF Tandem_Repeat 368391 368463 146 + . . scaffold588 GLEAN mRNA 389846 389927 0.999672 + . ID=CGI_10016224; scaffold588 TRF Tandem_Repeat 389846 389927 83 + . . scaffold588 GLEAN mRNA 390022 390197 0.999672 + . ID=CGI_10016224; scaffold588 TRF Tandem_Repeat 390022 390197 244 + . . scaffold588 GLEAN mRNA 390022 390197 0.999672 + . ID=CGI_10016224; scaffold588 TRF Tandem_Repeat 390022 390197 280 + . . scaffold588 GLEAN mRNA 390145 390197 0.999672 + . ID=CGI_10016224; scaffold588 TRF Tandem_Repeat 390145 390197 55 + . . scaffold588 GLEAN mRNA 396249 396982 0.983024 + . ID=CGI_10016225; scaffold588 TRF Tandem_Repeat 396249 396982 881 + . . scaffold588 GLEAN mRNA 403197 403223 0.983024 + . ID=CGI_10016225; scaffold588 TRF Tandem_Repeat 403197 403223 54 + . . scaffold588 GLEAN mRNA 400920 403151 0.983024 + . ID=CGI_10016225; scaffold588 WUBlastX LTR_Gypsy-Cigr 400920 403151 1104 - . . scaffold588 GLEAN mRNA 399981 401558 0.983024 + . ID=CGI_10016225; scaffold588 WUBlastX LTR_Gypsy 399981 401558 253 - . . scaffold588 GLEAN mRNA 399441 399527 0.983024 + . ID=CGI_10016225; scaffold588 WUBlastX LTR_Gypsy 399441 399527 25 - . . scaffold588 GLEAN mRNA 414310 415284 0.849231 + . ID=CGI_10016228; scaffold588 WUBlastX LTR_Gypsy 414310 415284 57 + . . scaffold588 GLEAN mRNA 414607 415302 0.849231 + . ID=CGI_10016228; scaffold588 WUBlastX LTR_DIRS 414607 415302 388 + . . scaffold588 GLEAN mRNA 415286 416479 0.849231 + . ID=CGI_10016228; scaffold588 WUBlastX LTR_DIRS 415286 416479 409 + . . scaffold588 GLEAN mRNA 414466 415206 0.849231 + . ID=CGI_10016228; scaffold588 WUBlastX LTR_DIRS 414466 415206 119 + . . scaffold588 GLEAN mRNA 416940 417866 0.849231 + . ID=CGI_10016228; scaffold588 WUBlastX LTR_DIRS 416940 417866 453 + . . scaffold1222 GLEAN mRNA 20382 20458 1 - . ID=CGI_10016234; scaffold1222 TRF Tandem_Repeat 20382 20458 77 + . . scaffold1222 GLEAN mRNA 20701 20727 1 - . ID=CGI_10016234; scaffold1222 TRF Tandem_Repeat 20701 20727 54 + . . scaffold1222 GLEAN mRNA 20771 20857 1 - . ID=CGI_10016234; scaffold1222 TRF Tandem_Repeat 20771 20857 95 + . . scaffold1222 GLEAN mRNA 20771 20857 1 - . ID=CGI_10016234; scaffold1222 TRF Tandem_Repeat 20771 20857 108 + . . scaffold1222 GLEAN mRNA 22035 22366 1 - . ID=CGI_10016234; scaffold1222 TRF Tandem_Repeat 22035 22366 489 + . . scaffold1222 GLEAN mRNA 77160 77260 0.648135 - . ID=CGI_10016236; scaffold1222 TRF Tandem_Repeat 77160 77260 63 + . . scaffold1222 GLEAN mRNA 75838 76413 0.648135 - . ID=CGI_10016236; scaffold1222 WUBlastX LINE_L2 75838 76413 146 + . . scaffold1222 GLEAN mRNA 76656 77159 0.648135 - . ID=CGI_10016236; scaffold1222 WUBlastX LINE_CR1-L2 76656 77159 181 + . . scaffold1222 GLEAN mRNA 76181 76681 0.648135 - . ID=CGI_10016236; scaffold1222 WUBlastX LINE_L2 76181 76681 279 + . . scaffold1222 GLEAN mRNA 76707 77096 0.648135 - . ID=CGI_10016236; scaffold1222 WUBlastX LINE_L2 76707 77096 221 + . . scaffold1222 GLEAN mRNA 144056 144087 0.999999 + . ID=CGI_10016238; scaffold1222 TRF Tandem_Repeat 144056 144087 64 + . . scaffold1222 GLEAN mRNA 136789 136980 0.999999 + . ID=CGI_10016238; scaffold1222 WUBlastX LINE_RTE-X 136789 136980 165 - . . scaffold1222 GLEAN mRNA 136384 136731 0.999999 + . ID=CGI_10016238; scaffold1222 WUBlastX LINE_RTE-X 136384 136731 183 - . . scaffold1222 GLEAN mRNA 136465 136788 0.999999 + . ID=CGI_10016238; scaffold1222 WUBlastX LINE_L2 136465 136788 41 - . . scaffold1222 GLEAN mRNA 150084 150122 0.999999 + . ID=CGI_10016238; scaffold1222 TRF Tandem_Repeat 150084 150122 78 + . . scaffold1222 GLEAN mRNA 190689 190730 0.999614 - . ID=CGI_10016240; scaffold1222 TRF Tandem_Repeat 190689 190730 84 + . . scaffold1222 GLEAN mRNA 195533 196501 0.999614 - . ID=CGI_10016240; scaffold1222 WUBlastX LINE_CR1-L2 195533 196501 224 - . . scaffold1222 GLEAN mRNA 202043 202081 0.999614 - . ID=CGI_10016240; scaffold1222 TRF Tandem_Repeat 202043 202081 78 + . . scaffold1222 GLEAN mRNA 202590 202634 0.999614 - . ID=CGI_10016240; scaffold1222 TRF Tandem_Repeat 202590 202634 90 + . . scaffold1222 GLEAN mRNA 204574 204645 0.999614 - . ID=CGI_10016240; scaffold1222 TRF Tandem_Repeat 204574 204645 137 + . . scaffold1222 GLEAN mRNA 209704 209776 0.999614 - . ID=CGI_10016240; scaffold1222 TRF Tandem_Repeat 209704 209776 103 + . . scaffold1222 GLEAN mRNA 226618 226799 1 - . ID=CGI_10016241; scaffold1222 TRF Tandem_Repeat 226618 226799 136 + . . scaffold1222 GLEAN mRNA 226621 226804 1 - . ID=CGI_10016241; scaffold1222 TRF Tandem_Repeat 226621 226804 135 + . . scaffold1222 GLEAN mRNA 238784 238815 0.998196 - . ID=CGI_10016242; scaffold1222 TRF Tandem_Repeat 238784 238815 64 + . . scaffold1222 GLEAN mRNA 242455 242488 0.998196 - . ID=CGI_10016242; scaffold1222 TRF Tandem_Repeat 242455 242488 68 + . . scaffold1222 GLEAN mRNA 260945 260990 0.66898 + . ID=CGI_10016243; scaffold1222 TRF Tandem_Repeat 260945 260990 58 + . . scaffold1222 GLEAN mRNA 265582 266442 0.66898 + . ID=CGI_10016243; scaffold1222 TRF Tandem_Repeat 265582 266442 1270 + . . scaffold1222 GLEAN mRNA 278884 279076 0.999922 + . ID=CGI_10016244; scaffold1222 TRF Tandem_Repeat 278884 279076 185 + . . scaffold1222 GLEAN mRNA 280806 281120 0.999922 + . ID=CGI_10016244; scaffold1222 TRF Tandem_Repeat 280806 281120 351 + . . scaffold1222 GLEAN mRNA 294272 294352 1 - . ID=CGI_10016245; scaffold1222 TRF Tandem_Repeat 294272 294352 65 + . . scaffold1222 GLEAN mRNA 295414 296363 1 - . ID=CGI_10016245; scaffold1222 TRF Tandem_Repeat 295414 296363 1261 + . . scaffold1222 GLEAN mRNA 296475 296518 1 - . ID=CGI_10016245; scaffold1222 TRF Tandem_Repeat 296475 296518 79 + . . scaffold1222 GLEAN mRNA 302046 302119 1 - . ID=CGI_10016245; scaffold1222 TRF Tandem_Repeat 302046 302119 132 + . . scaffold1222 GLEAN mRNA 361473 361514 0.999607 - . ID=CGI_10016250; scaffold1222 TRF Tandem_Repeat 361473 361514 59 + . . scaffold1222 GLEAN mRNA 360267 361298 0.999607 - . ID=CGI_10016250; scaffold1222 TRF Tandem_Repeat 360267 361298 1463 + . . scaffold1222 GLEAN mRNA 447316 447574 0.921485 - . ID=CGI_10016253; scaffold1222 TRF Tandem_Repeat 447316 447574 355 + . . scaffold1222 GLEAN mRNA 447316 447574 0.921485 - . ID=CGI_10016253; scaffold1222 TRF Tandem_Repeat 447316 447574 380 + . . scaffold1222 GLEAN mRNA 450479 450531 0.921485 - . ID=CGI_10016253; scaffold1222 TRF Tandem_Repeat 450479 450531 56 + . . scaffold1222 GLEAN mRNA 450498 450531 0.921485 - . ID=CGI_10016253; scaffold1222 TRF Tandem_Repeat 450498 450531 59 + . . scaffold614 GLEAN mRNA 63639 63727 0.592442 - . ID=CGI_10016257; scaffold614 TRF Tandem_Repeat 63639 63727 169 + . . scaffold614 GLEAN mRNA 85128 85162 1 + . ID=CGI_10016258; scaffold614 TRF Tandem_Repeat 85128 85162 52 + . . scaffold614 GLEAN mRNA 88087 88182 1 + . ID=CGI_10016258; scaffold614 TRF Tandem_Repeat 88087 88182 147 + . . scaffold614 GLEAN mRNA 88116 88169 1 + . ID=CGI_10016258; scaffold614 TRF Tandem_Repeat 88116 88169 66 + . . scaffold614 GLEAN mRNA 89285 89320 1 + . ID=CGI_10016258; scaffold614 TRF Tandem_Repeat 89285 89320 54 + . . scaffold614 GLEAN mRNA 89405 89463 1 + . ID=CGI_10016258; scaffold614 TRF Tandem_Repeat 89405 89463 118 + . . scaffold614 GLEAN mRNA 91737 92065 1 + . ID=CGI_10016258; scaffold614 TRF Tandem_Repeat 91737 92065 462 + . . scaffold614 GLEAN mRNA 121041 121081 0.999283 + . ID=CGI_10016260; scaffold614 TRF Tandem_Repeat 121041 121081 73 + . . scaffold614 GLEAN mRNA 131251 131309 0.999476 + . ID=CGI_10016261; scaffold614 TRF Tandem_Repeat 131251 131309 50 + . . scaffold614 GLEAN mRNA 133080 133833 0.999476 + . ID=CGI_10016261; scaffold614 TRF Tandem_Repeat 133080 133833 1204 + . . scaffold614 GLEAN mRNA 204414 204455 0.772957 + . ID=CGI_10016263; scaffold614 TRF Tandem_Repeat 204414 204455 50 + . . scaffold614 GLEAN mRNA 215982 216019 0.772957 + . ID=CGI_10016263; scaffold614 TRF Tandem_Repeat 215982 216019 67 + . . scaffold614 GLEAN mRNA 222423 222473 0.772957 + . ID=CGI_10016263; scaffold614 TRF Tandem_Repeat 222423 222473 102 + . . scaffold614 GLEAN mRNA 240687 240716 0.342182 - . ID=CGI_10016265; scaffold614 TRF Tandem_Repeat 240687 240716 51 + . . scaffold614 GLEAN mRNA 243364 243424 0.342182 - . ID=CGI_10016265; scaffold614 TRF Tandem_Repeat 243364 243424 95 + . . scaffold614 GLEAN mRNA 243364 243427 0.342182 - . ID=CGI_10016265; scaffold614 TRF Tandem_Repeat 243364 243427 83 + . . scaffold614 GLEAN mRNA 256114 256160 0.342182 - . ID=CGI_10016265; scaffold614 TRF Tandem_Repeat 256114 256160 94 + . . scaffold614 GLEAN mRNA 262476 262513 1 - . ID=CGI_10016266; scaffold614 TRF Tandem_Repeat 262476 262513 51 + . . scaffold614 GLEAN mRNA 329899 329945 1 - . ID=CGI_10016268; scaffold614 TRF Tandem_Repeat 329899 329945 78 + . . scaffold614 GLEAN mRNA 343116 343337 0.640385 - . ID=CGI_10016269; scaffold614 WUBlastX DNA_Harbinger 343116 343337 89 - . . scaffold614 GLEAN mRNA 346016 346074 0.640385 - . ID=CGI_10016269; scaffold614 TRF Tandem_Repeat 346016 346074 118 + . . scaffold614 GLEAN mRNA 388091 388155 0.999949 + . ID=CGI_10016271; scaffold614 TRF Tandem_Repeat 388091 388155 130 + . . scaffold614 GLEAN mRNA 391114 391180 0.999949 + . ID=CGI_10016271; scaffold614 TRF Tandem_Repeat 391114 391180 80 + . . scaffold614 GLEAN mRNA 393638 393684 0.999949 + . ID=CGI_10016271; scaffold614 TRF Tandem_Repeat 393638 393684 85 + . . scaffold614 GLEAN mRNA 393873 393897 0.999949 + . ID=CGI_10016271; scaffold614 TRF Tandem_Repeat 393873 393897 50 + . . scaffold614 GLEAN mRNA 393895 393924 0.999949 + . ID=CGI_10016271; scaffold614 TRF Tandem_Repeat 393895 393924 60 + . . scaffold614 GLEAN mRNA 394419 394485 0.999949 + . ID=CGI_10016271; scaffold614 TRF Tandem_Repeat 394419 394485 80 + . . scaffold614 GLEAN mRNA 394776 394824 0.999949 + . ID=CGI_10016271; scaffold614 TRF Tandem_Repeat 394776 394824 62 + . . scaffold614 GLEAN mRNA 415862 415899 0.999675 - . ID=CGI_10016276; scaffold614 TRF Tandem_Repeat 415862 415899 76 + . . scaffold1345 GLEAN mRNA 156894 156939 0.810287 - . ID=CGI_10016281; scaffold1345 TRF Tandem_Repeat 156894 156939 92 + . . scaffold1345 GLEAN mRNA 158844 158876 0.810287 - . ID=CGI_10016281; scaffold1345 TRF Tandem_Repeat 158844 158876 66 + . . scaffold1345 GLEAN mRNA 241500 241631 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 241500 241631 58 - . . scaffold1345 GLEAN mRNA 241565 241699 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 241565 241699 23 - . . scaffold1345 GLEAN mRNA 242357 242401 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 242357 242401 29 - . . scaffold1345 GLEAN mRNA 243514 243759 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 243514 243759 59 - . . scaffold1345 GLEAN mRNA 240272 240805 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 240272 240805 153 - . . scaffold1345 GLEAN mRNA 240230 240706 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 240230 240706 179 - . . scaffold1345 GLEAN mRNA 240260 240661 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 240260 240661 205 - . . scaffold1345 GLEAN mRNA 241500 241607 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 241500 241607 77 - . . scaffold1345 GLEAN mRNA 242416 242862 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 242416 242862 180 - . . scaffold1345 GLEAN mRNA 243484 243612 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 243484 243612 29 - . . scaffold1345 GLEAN mRNA 240036 240263 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 240036 240263 116 - . . scaffold1345 GLEAN mRNA 240081 240335 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 240081 240335 145 - . . scaffold1345 GLEAN mRNA 242261 242401 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 242261 242401 24 - . . scaffold1345 GLEAN mRNA 239985 240275 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 239985 240275 105 - . . scaffold1345 GLEAN mRNA 245878 246106 1 - . ID=CGI_10016283; scaffold1345 TRF Tandem_Repeat 245878 246106 440 + . . scaffold1345 GLEAN mRNA 366786 367046 0.999947 - . ID=CGI_10016287; scaffold1345 TRF Tandem_Repeat 366786 367046 495 + . . scaffold1345 GLEAN mRNA 394156 394394 0.996685 - . ID=CGI_10016288; scaffold1345 TRF Tandem_Repeat 394156 394394 301 + . . scaffold1345 GLEAN mRNA 395601 395641 0.996685 - . ID=CGI_10016288; scaffold1345 TRF Tandem_Repeat 395601 395641 82 + . . scaffold1345 GLEAN mRNA 396339 396623 0.996685 - . ID=CGI_10016288; scaffold1345 WUBlastX LINE_L1 396339 396623 31 - . . scaffold1345 GLEAN mRNA 393168 393378 0.996685 - . ID=CGI_10016288; scaffold1345 TRF Tandem_Repeat 393168 393378 287 + . . scaffold1345 GLEAN mRNA 393204 393279 0.996685 - . ID=CGI_10016288; scaffold1345 TRF Tandem_Repeat 393204 393279 51 + . . scaffold1345 GLEAN mRNA 393161 393386 0.996685 - . ID=CGI_10016288; scaffold1345 TRF Tandem_Repeat 393161 393386 326 + . . scaffold1345 GLEAN mRNA 405358 405384 0.544852 - . ID=CGI_10016289; scaffold1345 TRF Tandem_Repeat 405358 405384 54 + . . scaffold1345 GLEAN mRNA 455311 455348 0.998311 - . ID=CGI_10016290; scaffold1345 TRF Tandem_Repeat 455311 455348 76 + . . scaffold1316 GLEAN mRNA 33351 33432 0.999949 + . ID=CGI_10016292; scaffold1316 TRF Tandem_Repeat 33351 33432 101 + . . scaffold1316 GLEAN mRNA 33348 33432 0.999949 + . ID=CGI_10016292; scaffold1316 TRF Tandem_Repeat 33348 33432 71 + . . scaffold1316 GLEAN mRNA 41444 41482 0.999949 + . ID=CGI_10016292; scaffold1316 TRF Tandem_Repeat 41444 41482 78 + . . scaffold1316 GLEAN mRNA 41576 41619 0.999949 + . ID=CGI_10016292; scaffold1316 TRF Tandem_Repeat 41576 41619 88 + . . scaffold1316 GLEAN mRNA 47030 47082 0.999949 + . ID=CGI_10016292; scaffold1316 TRF Tandem_Repeat 47030 47082 97 + . . scaffold1316 GLEAN mRNA 115403 115460 0.955869 + . ID=CGI_10016297; scaffold1316 TRF Tandem_Repeat 115403 115460 116 + . . scaffold1316 GLEAN mRNA 174294 174788 0.999999 - . ID=CGI_10016298; scaffold1316 WUBlastX LTR_ERV1 174294 174788 31 - . . scaffold1316 GLEAN mRNA 194040 194066 0.999999 - . ID=CGI_10016299; scaffold1316 TRF Tandem_Repeat 194040 194066 54 + . . scaffold1316 GLEAN mRNA 207617 207662 0.95582 + . ID=CGI_10016302; scaffold1316 TRF Tandem_Repeat 207617 207662 92 + . . scaffold1316 GLEAN mRNA 207668 207701 0.95582 + . ID=CGI_10016302; scaffold1316 TRF Tandem_Repeat 207668 207701 59 + . . scaffold1316 GLEAN mRNA 260650 260856 0.995793 + . ID=CGI_10016306; scaffold1316 WUBlastX LTR_ERV1 260650 260856 66 + . . scaffold1316 GLEAN mRNA 260011 260538 0.995793 + . ID=CGI_10016306; scaffold1316 WUBlastX LTR_Gypsy 260011 260538 59 + . . scaffold1316 GLEAN mRNA 260098 260823 0.995793 + . ID=CGI_10016306; scaffold1316 WUBlastX LTR_Gypsy-Cigr 260098 260823 186 + . . scaffold1316 GLEAN mRNA 260887 261159 0.995793 + . ID=CGI_10016306; scaffold1316 WUBlastX LTR_Copia 260887 261159 44 + . . scaffold1316 GLEAN mRNA 260596 260916 0.995793 + . ID=CGI_10016306; scaffold1316 WUBlastX LTR_Gypsy 260596 260916 57 + . . scaffold1316 GLEAN mRNA 260830 261228 0.995793 + . ID=CGI_10016306; scaffold1316 WUBlastX LTR_Copia 260830 261228 31 + . . scaffold1316 GLEAN mRNA 343901 343936 0.999938 + . ID=CGI_10016310; scaffold1316 TRF Tandem_Repeat 343901 343936 72 + . . scaffold1316 GLEAN mRNA 348932 348980 0.999938 + . ID=CGI_10016310; scaffold1316 TRF Tandem_Repeat 348932 348980 98 + . . scaffold1316 GLEAN mRNA 369801 370202 0.346646 - . ID=CGI_10016312; scaffold1316 WUBlastX LINE_L1-Tx1 369801 370202 135 - . . scaffold1316 GLEAN mRNA 369654 370151 0.346646 - . ID=CGI_10016312; scaffold1316 WUBlastX LINE_L1-Tx1 369654 370151 91 - . . scaffold1316 GLEAN mRNA 370211 370771 0.346646 - . ID=CGI_10016312; scaffold1316 WUBlastX LINE_L1-Tx1 370211 370771 57 - . . scaffold1316 GLEAN mRNA 380116 380162 0.346646 - . ID=CGI_10016312; scaffold1316 TRF Tandem_Repeat 380116 380162 76 + . . scaffold1316 GLEAN mRNA 380207 380245 0.346646 - . ID=CGI_10016312; scaffold1316 TRF Tandem_Repeat 380207 380245 78 + . . scaffold1316 GLEAN mRNA 380325 380380 0.346646 - . ID=CGI_10016312; scaffold1316 TRF Tandem_Repeat 380325 380380 112 + . . scaffold1316 GLEAN mRNA 385015 385054 0.346646 - . ID=CGI_10016312; scaffold1316 TRF Tandem_Repeat 385015 385054 80 + . . scaffold1316 GLEAN mRNA 385304 385400 0.346646 - . ID=CGI_10016312; scaffold1316 TRF Tandem_Repeat 385304 385400 178 + . . scaffold1316 GLEAN mRNA 388347 388400 0.346646 - . ID=CGI_10016312; scaffold1316 TRF Tandem_Repeat 388347 388400 90 + . . scaffold1316 GLEAN mRNA 428970 429009 0.999994 - . ID=CGI_10016315; scaffold1316 TRF Tandem_Repeat 428970 429009 80 + . . scaffold1316 GLEAN mRNA 429210 429251 0.999994 - . ID=CGI_10016315; scaffold1316 TRF Tandem_Repeat 429210 429251 84 + . . scaffold1574 GLEAN mRNA 54978 55332 0.999965 - . ID=CGI_10016318; scaffold1574 TRF Tandem_Repeat 54978 55332 530 + . . scaffold1574 GLEAN mRNA 55615 55733 0.999965 - . ID=CGI_10016318; scaffold1574 TRF Tandem_Repeat 55615 55733 150 + . . scaffold1574 GLEAN mRNA 83787 83877 0.677897 + . ID=CGI_10016320; scaffold1574 TRF Tandem_Repeat 83787 83877 155 + . . scaffold1574 GLEAN mRNA 83954 84050 0.677897 + . ID=CGI_10016320; scaffold1574 TRF Tandem_Repeat 83954 84050 131 + . . scaffold1574 GLEAN mRNA 87536 87611 0.677897 + . ID=CGI_10016320; scaffold1574 TRF Tandem_Repeat 87536 87611 120 + . . scaffold1574 GLEAN mRNA 90866 90908 0.677897 + . ID=CGI_10016320; scaffold1574 TRF Tandem_Repeat 90866 90908 86 + . . scaffold1574 GLEAN mRNA 92658 92790 0.677897 + . ID=CGI_10016320; scaffold1574 TRF Tandem_Repeat 92658 92790 86 + . . scaffold1574 GLEAN mRNA 92658 92788 0.677897 + . ID=CGI_10016320; scaffold1574 TRF Tandem_Repeat 92658 92788 118 + . . scaffold1574 GLEAN mRNA 92792 93305 0.677897 + . ID=CGI_10016320; scaffold1574 WUBlastX LINE_Penelope 92792 93496 172 + . . scaffold1574 GLEAN mRNA 112677 113012 0.965913 - . ID=CGI_10016322; scaffold1574 WUBlastX LINE_RTE-X 112587 113015 68 - . . scaffold1574 GLEAN mRNA 179399 179447 0.813773 + . ID=CGI_10016323; scaffold1574 TRF Tandem_Repeat 179399 179447 98 + . . scaffold1574 GLEAN mRNA 179490 179523 0.813773 + . ID=CGI_10016323; scaffold1574 TRF Tandem_Repeat 179490 179523 59 + . . scaffold1574 GLEAN mRNA 183077 183233 0.813773 + . ID=CGI_10016323; scaffold1574 TRF Tandem_Repeat 183077 183233 244 + . . scaffold1574 GLEAN mRNA 184743 184777 0.813773 + . ID=CGI_10016323; scaffold1574 TRF Tandem_Repeat 184743 184777 52 + . . scaffold1574 GLEAN mRNA 184788 185624 0.813773 + . ID=CGI_10016323; scaffold1574 TRF Tandem_Repeat 184788 185624 1275 + . . scaffold1574 GLEAN mRNA 192632 192659 0.813773 + . ID=CGI_10016323; scaffold1574 TRF Tandem_Repeat 192632 192659 56 + . . scaffold1574 GLEAN mRNA 213493 213563 0.999661 + . ID=CGI_10016324; scaffold1574 TRF Tandem_Repeat 213493 213563 142 + . . scaffold1574 GLEAN mRNA 215350 215392 0.999661 + . ID=CGI_10016324; scaffold1574 TRF Tandem_Repeat 215350 215392 86 + . . scaffold1574 GLEAN mRNA 215563 215589 0.999661 + . ID=CGI_10016324; scaffold1574 TRF Tandem_Repeat 215563 215589 54 + . . scaffold1574 GLEAN mRNA 310929 310990 0.837234 + . ID=CGI_10016327; scaffold1574 TRF Tandem_Repeat 310929 310990 81 + . . scaffold1574 GLEAN mRNA 320434 320695 0.837234 + . ID=CGI_10016327; scaffold1574 TRF Tandem_Repeat 320434 320695 325 + . . scaffold1574 GLEAN mRNA 323731 323767 0.837234 + . ID=CGI_10016327; scaffold1574 TRF Tandem_Repeat 323731 323767 56 + . . scaffold1574 GLEAN mRNA 326548 327310 0.837234 + . ID=CGI_10016327; scaffold1574 TRF Tandem_Repeat 326548 327310 1070 + . . scaffold1574 GLEAN mRNA 328144 328212 0.837234 + . ID=CGI_10016327; scaffold1574 TRF Tandem_Repeat 328144 328212 52 + . . scaffold1574 GLEAN mRNA 328144 328212 0.837234 + . ID=CGI_10016327; scaffold1574 TRF Tandem_Repeat 328144 328212 70 + . . scaffold1574 GLEAN mRNA 328074 328242 0.837234 + . ID=CGI_10016327; scaffold1574 TRF Tandem_Repeat 328074 328242 80 + . . scaffold1574 GLEAN mRNA 328165 328277 0.837234 + . ID=CGI_10016327; scaffold1574 TRF Tandem_Repeat 328165 328277 91 + . . scaffold1574 GLEAN mRNA 328131 328262 0.837234 + . ID=CGI_10016327; scaffold1574 TRF Tandem_Repeat 328131 328262 90 + . . scaffold1574 GLEAN mRNA 340517 340549 0.45163 - . ID=CGI_10016329; scaffold1574 TRF Tandem_Repeat 340517 340549 57 + . . scaffold1574 GLEAN mRNA 346325 346455 0.45163 - . ID=CGI_10016329; scaffold1574 TRF Tandem_Repeat 346325 346455 122 + . . scaffold1574 GLEAN mRNA 347673 347712 0.45163 - . ID=CGI_10016329; scaffold1574 TRF Tandem_Repeat 347673 347712 71 + . . scaffold1574 GLEAN mRNA 356488 356525 1 + . ID=CGI_10016330; scaffold1574 TRF Tandem_Repeat 356488 356525 60 + . . scaffold1574 GLEAN mRNA 404296 404327 0.647136 + . ID=CGI_10016331; scaffold1574 TRF Tandem_Repeat 404296 404327 57 + . . scaffold1574 GLEAN mRNA 455249 455308 0.999957 + . ID=CGI_10016335; scaffold1574 TRF Tandem_Repeat 455249 455308 120 + . . scaffold1574 GLEAN mRNA 452567 452884 0.999957 + . ID=CGI_10016335; scaffold1574 WUBlastX LTR_Gypsy 452567 452884 48 + . . scaffold1574 GLEAN mRNA 456162 457511 0.999957 + . ID=CGI_10016335; scaffold1574 WUBlastX LINE_RTE-X 456162 457511 228 - . . scaffold1574 GLEAN mRNA 455676 457628 0.999957 + . ID=CGI_10016335; scaffold1574 WUBlastX LINE_RTE-X 455676 457628 168 - . . scaffold1574 GLEAN mRNA 452681 453022 0.999957 + . ID=CGI_10016335; scaffold1574 WUBlastX LTR_Gypsy 452681 453022 47 + . . scaffold1574 GLEAN mRNA 458294 458650 0.999957 + . ID=CGI_10016335; scaffold1574 WUBlastX LINE_Proto2 458294 458650 37 - . . scaffold1574 GLEAN mRNA 456834 457931 0.999957 + . ID=CGI_10016335; scaffold1574 WUBlastX LINE_L2 456834 457931 188 - . . scaffold1574 GLEAN mRNA 457849 458280 0.999957 + . ID=CGI_10016335; scaffold1574 WUBlastX LINE_I 457849 458280 69 - . . scaffold1574 GLEAN mRNA 456630 457619 0.999957 + . ID=CGI_10016335; scaffold1574 WUBlastX LINE_RTE-X 456630 457619 334 - . . scaffold1574 GLEAN mRNA 452807 453163 0.999957 + . ID=CGI_10016335; scaffold1574 WUBlastX LTR_Gypsy 452807 453163 39 + . . scaffold1574 GLEAN mRNA 458288 458536 0.999957 + . ID=CGI_10016335; scaffold1574 WUBlastX LINE_Telomeric 458288 458536 51 - . . scaffold1574 GLEAN mRNA 453155 453481 0.999957 + . ID=CGI_10016335; scaffold1574 WUBlastX LTR_Gypsy 453155 453481 48 + . . scaffold61 GLEAN mRNA 24171 24237 0.978118 - . ID=CGI_10016336; scaffold61 TRF Tandem_Repeat 24171 24237 50 + . . scaffold61 GLEAN mRNA 24170 24227 0.978118 - . ID=CGI_10016336; scaffold61 TRF Tandem_Repeat 24170 24227 50 + . . scaffold61 GLEAN mRNA 24170 24239 0.978118 - . ID=CGI_10016336; scaffold61 TRF Tandem_Repeat 24170 24239 62 + . . scaffold61 GLEAN mRNA 41748 41906 0.936561 + . ID=CGI_10016337; scaffold61 WUBlastX LINE_RTE-X 41748 41906 53 + . . scaffold61 GLEAN mRNA 57773 57814 0.583706 + . ID=CGI_10016339; scaffold61 TRF Tandem_Repeat 57773 57814 84 + . . scaffold61 GLEAN mRNA 60341 60534 0.583706 + . ID=CGI_10016339; scaffold61 TRF Tandem_Repeat 60341 60534 130 + . . scaffold61 GLEAN mRNA 91789 91877 0.999676 - . ID=CGI_10016342; scaffold61 TRF Tandem_Repeat 91789 91877 171 + . . scaffold61 GLEAN mRNA 94155 94208 0.999676 - . ID=CGI_10016342; scaffold61 TRF Tandem_Repeat 94155 94208 108 + . . scaffold61 GLEAN mRNA 91956 92267 0.999676 - . ID=CGI_10016342; scaffold61 WUBlastX LINE_RTE-X 91956 92267 123 + . . scaffold61 GLEAN mRNA 91091 91441 0.999676 - . ID=CGI_10016342; scaffold61 WUBlastX LINE_RTE-X 91091 91441 68 + . . scaffold61 GLEAN mRNA 90273 90362 0.999676 - . ID=CGI_10016342; scaffold61 WUBlastX LINE_Jockey 90273 90362 20 + . . scaffold61 GLEAN mRNA 92046 92267 0.999676 - . ID=CGI_10016342; scaffold61 WUBlastX LINE_RTE-X 92046 92267 151 + . . scaffold61 GLEAN mRNA 92270 92707 0.999676 - . ID=CGI_10016342; scaffold61 WUBlastX LINE_RTE-X 92270 92707 104 + . . scaffold61 GLEAN mRNA 91091 91372 0.999676 - . ID=CGI_10016342; scaffold61 WUBlastX LINE_RTE-X 91091 91372 91 + . . scaffold61 GLEAN mRNA 92046 92312 0.999676 - . ID=CGI_10016342; scaffold61 WUBlastX LINE_RTE-X 92046 92312 115 + . . scaffold61 GLEAN mRNA 91091 91549 0.999676 - . ID=CGI_10016342; scaffold61 WUBlastX LINE_RTE-X 91091 91549 30 + . . scaffold61 GLEAN mRNA 136290 136327 1 + . ID=CGI_10016345; scaffold61 TRF Tandem_Repeat 136290 136327 76 + . . scaffold61 GLEAN mRNA 169426 169469 0.205101 - . ID=CGI_10016346; scaffold61 TRF Tandem_Repeat 169426 169469 88 + . . scaffold61 GLEAN mRNA 177374 177423 0.205101 - . ID=CGI_10016346; scaffold61 TRF Tandem_Repeat 177374 177423 55 + . . scaffold61 GLEAN mRNA 179050 179103 0.205101 - . ID=CGI_10016346; scaffold61 TRF Tandem_Repeat 179050 179103 90 + . . scaffold61 GLEAN mRNA 164918 165574 0.205101 - . ID=CGI_10016346; scaffold61 WUBlastX DNA_Academ 164918 165574 152 - . . scaffold61 GLEAN mRNA 165774 167135 0.205101 - . ID=CGI_10016346; scaffold61 WUBlastX DNA_Academ 165774 167135 395 - . . scaffold61 GLEAN mRNA 165152 165775 0.205101 - . ID=CGI_10016346; scaffold61 WUBlastX DNA_Academ 165152 165775 381 - . . scaffold61 GLEAN mRNA 165771 166871 0.205101 - . ID=CGI_10016346; scaffold61 WUBlastX DNA_Academ 165771 166871 554 - . . scaffold61 GLEAN mRNA 185250 186302 0.205101 - . ID=CGI_10016346; scaffold61 WUBlastX LINE_L2 185250 186302 59 - . . scaffold61 GLEAN mRNA 185211 186080 0.205101 - . ID=CGI_10016346; scaffold61 WUBlastX LINE_L2 185211 186080 259 - . . scaffold61 GLEAN mRNA 191151 191297 1 + . ID=CGI_10016347; scaffold61 WUBlastX DNA_Sola 191151 191297 70 + . . scaffold61 GLEAN mRNA 191547 191753 1 + . ID=CGI_10016347; scaffold61 WUBlastX DNA_Sola 191547 191753 43 + . . scaffold61 GLEAN mRNA 189931 190515 1 + . ID=CGI_10016347; scaffold61 WUBlastX DNA_Sola 189652 190515 31 + . . scaffold61 GLEAN mRNA 218342 218390 0.99996 + . ID=CGI_10016348; scaffold61 TRF Tandem_Repeat 218342 218390 98 + . . scaffold61 GLEAN mRNA 239603 239647 0.920453 + . ID=CGI_10016349; scaffold61 TRF Tandem_Repeat 239603 239647 56 + . . scaffold61 GLEAN mRNA 259051 259115 0.999918 + . ID=CGI_10016351; scaffold61 TRF Tandem_Repeat 259051 259115 67 + . . scaffold61 GLEAN mRNA 259075 259119 0.999918 + . ID=CGI_10016351; scaffold61 TRF Tandem_Repeat 259075 259119 63 + . . scaffold61 GLEAN mRNA 259073 259143 0.999918 + . ID=CGI_10016351; scaffold61 TRF Tandem_Repeat 259073 259143 70 + . . scaffold61 GLEAN mRNA 259113 259147 0.999918 + . ID=CGI_10016351; scaffold61 TRF Tandem_Repeat 259113 259147 70 + . . scaffold61 GLEAN mRNA 274976 275007 0.999973 + . ID=CGI_10016352; scaffold61 TRF Tandem_Repeat 274976 275007 55 + . . scaffold61 GLEAN mRNA 280682 280735 0.999973 + . ID=CGI_10016352; scaffold61 TRF Tandem_Repeat 280682 280735 108 + . . scaffold61 GLEAN mRNA 280735 280768 0.999973 + . ID=CGI_10016352; scaffold61 TRF Tandem_Repeat 280735 280768 68 + . . scaffold61 GLEAN mRNA 289255 289288 0.558407 + . ID=CGI_10016353; scaffold61 TRF Tandem_Repeat 289255 289288 52 + . . scaffold61 GLEAN mRNA 397547 397627 0.86652 - . ID=CGI_10016361; scaffold61 TRF Tandem_Repeat 397547 397627 114 + . . scaffold61 GLEAN mRNA 443946 443977 1 - . ID=CGI_10016365; scaffold61 TRF Tandem_Repeat 443946 443977 64 + . . scaffold61 GLEAN mRNA 444320 444346 1 - . ID=CGI_10016365; scaffold61 TRF Tandem_Repeat 444320 444346 54 + . . scaffold594 GLEAN mRNA 23117 23163 0.480011 + . ID=CGI_10016368; scaffold594 TRF Tandem_Repeat 23117 23163 80 + . . scaffold594 GLEAN mRNA 24688 24875 0.480011 + . ID=CGI_10016368; scaffold594 TRF Tandem_Repeat 24688 24875 128 + . . scaffold594 GLEAN mRNA 31997 32022 0.480011 + . ID=CGI_10016368; scaffold594 TRF Tandem_Repeat 31997 32022 52 + . . scaffold594 GLEAN mRNA 32258 32316 0.480011 + . ID=CGI_10016368; scaffold594 TRF Tandem_Repeat 32258 32316 86 + . . scaffold594 GLEAN mRNA 41544 41577 0.480011 + . ID=CGI_10016368; scaffold594 TRF Tandem_Repeat 41544 41577 68 + . . scaffold594 GLEAN mRNA 43894 43926 0.480011 + . ID=CGI_10016368; scaffold594 TRF Tandem_Repeat 43894 43926 66 + . . scaffold594 GLEAN mRNA 115584 115627 0.993589 + . ID=CGI_10016372; scaffold594 TRF Tandem_Repeat 115584 115627 79 + . . scaffold594 GLEAN mRNA 178108 178184 0.999949 + . ID=CGI_10016375; scaffold594 TRF Tandem_Repeat 178108 178184 97 + . . scaffold594 GLEAN mRNA 191723 191760 0.999949 + . ID=CGI_10016375; scaffold594 TRF Tandem_Repeat 191723 191760 51 + . . scaffold594 GLEAN mRNA 212772 212798 0.979494 - . ID=CGI_10016377; scaffold594 TRF Tandem_Repeat 212772 212798 54 + . . scaffold594 GLEAN mRNA 229398 229432 0.291493 + . ID=CGI_10016380; scaffold594 TRF Tandem_Repeat 229398 229432 70 + . . scaffold594 GLEAN mRNA 228948 229394 0.291493 + . ID=CGI_10016380; scaffold594 WUBlastX DNA_Crypton 228948 229394 49 + . . scaffold594 GLEAN mRNA 274116 274221 0.999086 + . ID=CGI_10016384; scaffold594 TRF Tandem_Repeat 274116 274221 166 + . . scaffold594 GLEAN mRNA 274116 274221 0.999086 + . ID=CGI_10016384; scaffold594 TRF Tandem_Repeat 274116 274221 169 + . . scaffold594 GLEAN mRNA 274937 275116 0.999086 + . ID=CGI_10016384; scaffold594 TRF Tandem_Repeat 274937 275116 216 + . . scaffold594 GLEAN mRNA 274937 275116 0.999086 + . ID=CGI_10016384; scaffold594 TRF Tandem_Repeat 274937 275116 216 + . . scaffold594 GLEAN mRNA 274938 275116 0.999086 + . ID=CGI_10016384; scaffold594 TRF Tandem_Repeat 274938 275116 185 + . . scaffold594 GLEAN mRNA 292354 292423 0.998986 - . ID=CGI_10016385; scaffold594 TRF Tandem_Repeat 292354 292423 140 + . . scaffold594 GLEAN mRNA 309909 309957 0.544675 - . ID=CGI_10016386; scaffold594 TRF Tandem_Repeat 309909 309957 98 + . . scaffold594 GLEAN mRNA 321521 321566 1 + . ID=CGI_10016387; scaffold594 TRF Tandem_Repeat 321521 321566 92 + . . scaffold594 GLEAN mRNA 373131 373165 0.439563 + . ID=CGI_10016389; scaffold594 TRF Tandem_Repeat 373131 373165 70 + . . scaffold594 GLEAN mRNA 373231 373294 0.439563 + . ID=CGI_10016389; scaffold594 TRF Tandem_Repeat 373231 373294 83 + . . scaffold594 GLEAN mRNA 376956 376982 0.439563 + . ID=CGI_10016389; scaffold594 TRF Tandem_Repeat 376956 376982 54 + . . scaffold594 GLEAN mRNA 377026 377094 0.439563 + . ID=CGI_10016389; scaffold594 TRF Tandem_Repeat 377026 377094 129 + . . scaffold594 GLEAN mRNA 379314 379443 0.439563 + . ID=CGI_10016389; scaffold594 TRF Tandem_Repeat 379314 379443 93 + . . scaffold594 GLEAN mRNA 379359 379505 0.439563 + . ID=CGI_10016389; scaffold594 TRF Tandem_Repeat 379359 379505 73 + . . scaffold594 GLEAN mRNA 380470 381243 0.439563 + . ID=CGI_10016389; scaffold594 TRF Tandem_Repeat 380470 381243 768 + . . scaffold594 GLEAN mRNA 381289 381326 0.439563 + . ID=CGI_10016389; scaffold594 TRF Tandem_Repeat 381289 381326 60 + . . scaffold594 GLEAN mRNA 389509 389568 0.439563 + . ID=CGI_10016389; scaffold594 TRF Tandem_Repeat 389509 389568 104 + . . scaffold594 GLEAN mRNA 401512 401558 0.439563 + . ID=CGI_10016389; scaffold594 TRF Tandem_Repeat 401512 401558 94 + . . scaffold594 GLEAN mRNA 415841 415930 0.999391 - . ID=CGI_10016391; scaffold594 WUBlastX LINE_RTE-X 415841 415930 21 - . . scaffold594 GLEAN mRNA 416070 416168 0.999391 - . ID=CGI_10016391; scaffold594 WUBlastX LINE_RTE-X 416070 416657 78 - . . scaffold594 GLEAN mRNA 420445 421569 0.579442 + . ID=CGI_10016392; scaffold594 TRF Tandem_Repeat 420445 421569 1664 + . . scaffold594 GLEAN mRNA 421600 421659 0.579442 + . ID=CGI_10016392; scaffold594 TRF Tandem_Repeat 421600 421659 84 + . . scaffold594 GLEAN mRNA 421596 421658 0.579442 + . ID=CGI_10016392; scaffold594 TRF Tandem_Repeat 421596 421658 99 + . . scaffold1800 GLEAN mRNA 7175 7711 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy 7175 7711 75 + . . scaffold1800 GLEAN mRNA 7906 8211 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy 7906 8211 61 + . . scaffold1800 GLEAN mRNA 8011 8217 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 8011 8217 87 + . . scaffold1800 GLEAN mRNA 8423 8662 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy 8423 8662 31 + . . scaffold1800 GLEAN mRNA 6034 6642 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 6034 6642 384 + . . scaffold1800 GLEAN mRNA 7151 7621 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 7151 7621 113 + . . scaffold1800 GLEAN mRNA 8065 8253 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 8065 8253 120 + . . scaffold1800 GLEAN mRNA 8232 8408 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 8232 8408 81 + . . scaffold1800 GLEAN mRNA 8402 8575 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 8402 8575 70 + . . scaffold1800 GLEAN mRNA 6034 7548 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 6034 7548 328 + . . scaffold1800 GLEAN mRNA 16907 16956 0.179817 + . ID=CGI_10016397; scaffold1800 TRF Tandem_Repeat 16907 16956 57 + . . scaffold1800 GLEAN mRNA 17784 17867 0.179817 + . ID=CGI_10016397; scaffold1800 TRF Tandem_Repeat 17784 17867 109 + . . scaffold1800 GLEAN mRNA 45688 45724 0.179817 + . ID=CGI_10016397; scaffold1800 TRF Tandem_Repeat 45688 45724 74 + . . scaffold1800 GLEAN mRNA 47378 47455 0.179817 + . ID=CGI_10016397; scaffold1800 TRF Tandem_Repeat 47378 47455 72 + . . scaffold1800 GLEAN mRNA 59388 59513 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy 59388 59513 54 + . . scaffold1800 GLEAN mRNA 55920 56039 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX DNA_P 55920 56039 77 + . . scaffold1800 GLEAN mRNA 59758 59925 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Pao 59758 59925 30 + . . scaffold1800 GLEAN mRNA 71953 72006 0.179817 + . ID=CGI_10016397; scaffold1800 TRF Tandem_Repeat 71953 72006 108 + . . scaffold1800 GLEAN mRNA 86821 86871 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Copia 86821 86871 21 + . . scaffold1800 GLEAN mRNA 32523 32945 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LINE_L1-Tx1 32523 32945 68 - . . scaffold1800 GLEAN mRNA 32505 32834 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LINE_L1-Tx1 32505 32834 77 - . . scaffold1800 GLEAN mRNA 106944 107234 0.999101 - . ID=CGI_10016398; scaffold1800 WUBlastX LINE_CR1-L2 106944 107234 142 + . . scaffold1800 GLEAN mRNA 107215 107853 0.999101 - . ID=CGI_10016398; scaffold1800 WUBlastX LINE_CR1-L2 107215 107853 208 + . . scaffold1800 GLEAN mRNA 106857 107192 0.999101 - . ID=CGI_10016398; scaffold1800 WUBlastX LINE_CR1 106857 107192 52 + . . scaffold1800 GLEAN mRNA 107013 107243 0.999101 - . ID=CGI_10016398; scaffold1800 WUBlastX LINE_L2 107013 107243 172 + . . scaffold1800 GLEAN mRNA 121730 122153 1 + . ID=CGI_10016399; scaffold1800 TRF Tandem_Repeat 121730 122153 469 + . . scaffold1800 GLEAN mRNA 122288 122551 1 + . ID=CGI_10016399; scaffold1800 TRF Tandem_Repeat 122288 122551 456 + . . scaffold1800 GLEAN mRNA 121733 122551 1 + . ID=CGI_10016399; scaffold1800 TRF Tandem_Repeat 121733 122551 508 + . . scaffold1800 GLEAN mRNA 123269 123317 1 + . ID=CGI_10016399; scaffold1800 TRF Tandem_Repeat 123269 123317 62 + . . scaffold1800 GLEAN mRNA 123347 124100 1 + . ID=CGI_10016399; scaffold1800 TRF Tandem_Repeat 123347 124100 1101 + . . scaffold1800 GLEAN mRNA 124103 124860 1 + . ID=CGI_10016399; scaffold1800 TRF Tandem_Repeat 124103 124860 1085 + . . scaffold1800 GLEAN mRNA 149563 149593 0.999623 - . ID=CGI_10016401; scaffold1800 TRF Tandem_Repeat 149563 149593 62 + . . scaffold1800 GLEAN mRNA 150973 151228 0.999623 - . ID=CGI_10016401; scaffold1800 TRF Tandem_Repeat 150973 151228 451 + . . scaffold1800 GLEAN mRNA 150974 151228 0.999623 - . ID=CGI_10016401; scaffold1800 TRF Tandem_Repeat 150974 151228 186 + . . scaffold1800 GLEAN mRNA 158098 158141 0.999623 - . ID=CGI_10016401; scaffold1800 TRF Tandem_Repeat 158098 158141 70 + . . scaffold1800 GLEAN mRNA 171746 172027 0.999623 - . ID=CGI_10016401; scaffold1800 TRF Tandem_Repeat 171746 172027 474 + . . scaffold1800 GLEAN mRNA 171766 172729 0.999623 - . ID=CGI_10016401; scaffold1800 TRF Tandem_Repeat 171766 172729 299 + . . scaffold1800 GLEAN mRNA 172018 172729 0.999623 - . ID=CGI_10016401; scaffold1800 TRF Tandem_Repeat 172018 172729 844 + . . scaffold1800 GLEAN mRNA 184707 185604 0.999623 - . ID=CGI_10016401; scaffold1800 TRF Tandem_Repeat 184707 185604 1090 + . . scaffold1800 GLEAN mRNA 213193 213227 0.999957 - . ID=CGI_10016402; scaffold1800 TRF Tandem_Repeat 213193 213227 63 + . . scaffold1800 GLEAN mRNA 222158 222259 0.937789 - . ID=CGI_10016403; scaffold1800 TRF Tandem_Repeat 222158 222259 84 + . . scaffold1800 GLEAN mRNA 222162 222280 0.937789 - . ID=CGI_10016403; scaffold1800 TRF Tandem_Repeat 222162 222280 81 + . . scaffold1800 GLEAN mRNA 222200 222289 0.937789 - . ID=CGI_10016403; scaffold1800 TRF Tandem_Repeat 222200 222289 51 + . . scaffold1800 GLEAN mRNA 259705 259851 0.999949 - . ID=CGI_10016404; scaffold1800 TRF Tandem_Repeat 259705 259851 97 + . . scaffold1800 GLEAN mRNA 261134 261194 0.999949 - . ID=CGI_10016404; scaffold1800 TRF Tandem_Repeat 261134 261194 106 + . . scaffold1800 GLEAN mRNA 262189 262302 0.999949 - . ID=CGI_10016404; scaffold1800 WUBlastX LINE_CR1-L2 262189 262302 21 - . . scaffold1800 GLEAN mRNA 262647 263030 0.999949 - . ID=CGI_10016404; scaffold1800 WUBlastX LINE_CR1 262647 263030 96 - . . scaffold1800 GLEAN mRNA 262710 262958 0.999949 - . ID=CGI_10016404; scaffold1800 WUBlastX LINE_CR1 262710 262958 183 - . . scaffold1800 GLEAN mRNA 262527 262958 0.999949 - . ID=CGI_10016404; scaffold1800 WUBlastX LINE_CR1 262527 262958 140 - . . scaffold1800 GLEAN mRNA 262239 262388 0.999949 - . ID=CGI_10016404; scaffold1800 WUBlastX LINE_CR1 262239 262388 52 - . . scaffold1800 GLEAN mRNA 310110 310313 0.999996 + . ID=CGI_10016406; scaffold1800 WUBlastX LTR_Gypsy 310110 310313 30 + . . scaffold1800 GLEAN mRNA 309587 309925 0.999996 + . ID=CGI_10016406; scaffold1800 WUBlastX LTR_Gypsy 309533 309925 235 + . . scaffold1800 GLEAN mRNA 320158 320223 0.999996 + . ID=CGI_10016406; scaffold1800 TRF Tandem_Repeat 320158 320223 132 + . . scaffold1800 GLEAN mRNA 312853 313641 0.999996 + . ID=CGI_10016406; scaffold1800 WUBlastX LTR_Gypsy 312853 313641 76 + . . scaffold1800 GLEAN mRNA 312187 313521 0.999996 + . ID=CGI_10016406; scaffold1800 WUBlastX LTR_Gypsy 312187 313521 894 + . . scaffold1800 GLEAN mRNA 310155 312197 0.999996 + . ID=CGI_10016406; scaffold1800 WUBlastX LTR_Gypsy 310155 312197 1308 + . . scaffold1800 GLEAN mRNA 397473 397810 0.999735 - . ID=CGI_10016408; scaffold1800 TRF Tandem_Repeat 397473 397810 414 + . . scaffold1800 GLEAN mRNA 434590 434690 0.999676 + . ID=CGI_10016413; scaffold1800 TRF Tandem_Repeat 434590 434690 69 + . . scaffold1800 GLEAN mRNA 434590 434690 0.999676 + . ID=CGI_10016413; scaffold1800 TRF Tandem_Repeat 434590 434690 91 + . . scaffold1800 GLEAN mRNA 434925 434957 0.999676 + . ID=CGI_10016413; scaffold1800 TRF Tandem_Repeat 434925 434957 66 + . . scaffold1800 GLEAN mRNA 435743 435783 0.999676 + . ID=CGI_10016413; scaffold1800 TRF Tandem_Repeat 435743 435783 82 + . . scaffold1800 GLEAN mRNA 436018 436127 0.999676 + . ID=CGI_10016413; scaffold1800 TRF Tandem_Repeat 436018 436127 107 + . . scaffold1800 GLEAN mRNA 439410 439744 0.999676 + . ID=CGI_10016413; scaffold1800 TRF Tandem_Repeat 439410 439744 546 + . . scaffold1241 GLEAN mRNA 796 845 0.999415 + . ID=CGI_10016414; scaffold1241 TRF Tandem_Repeat 796 845 73 + . . scaffold1241 GLEAN mRNA 12119 12243 1 + . ID=CGI_10016415; scaffold1241 TRF Tandem_Repeat 12119 12243 67 + . . scaffold1241 GLEAN mRNA 12285 12478 1 + . ID=CGI_10016415; scaffold1241 TRF Tandem_Repeat 12285 12478 199 + . . scaffold1241 GLEAN mRNA 12310 12550 1 + . ID=CGI_10016415; scaffold1241 TRF Tandem_Repeat 12310 12550 161 + . . scaffold1241 GLEAN mRNA 12714 12763 1 + . ID=CGI_10016415; scaffold1241 TRF Tandem_Repeat 12714 12763 100 + . . scaffold1241 GLEAN mRNA 27070 27110 0.999676 + . ID=CGI_10016417; scaffold1241 TRF Tandem_Repeat 27070 27110 73 + . . scaffold1241 GLEAN mRNA 27070 27111 0.999676 + . ID=CGI_10016417; scaffold1241 TRF Tandem_Repeat 27070 27111 57 + . . scaffold1241 GLEAN mRNA 33663 34599 0.858231 - . ID=CGI_10016418; scaffold1241 TRF Tandem_Repeat 33663 34599 586 + . . scaffold1241 GLEAN mRNA 33645 34603 0.858231 - . ID=CGI_10016418; scaffold1241 TRF Tandem_Repeat 33645 34603 684 + . . scaffold1241 GLEAN mRNA 33677 34599 0.858231 - . ID=CGI_10016418; scaffold1241 TRF Tandem_Repeat 33677 34599 638 + . . scaffold1241 GLEAN mRNA 38238 38602 0.858231 - . ID=CGI_10016418; scaffold1241 TRF Tandem_Repeat 38238 38602 642 + . . scaffold1241 GLEAN mRNA 44709 44771 0.858231 - . ID=CGI_10016418; scaffold1241 WUBlastX LTR_DIRS 44709 44771 27 + . . scaffold1241 GLEAN mRNA 40728 44750 0.858231 - . ID=CGI_10016418; scaffold1241 WUBlastX LTR_Gypsy 40728 44750 2062 + . . scaffold1241 GLEAN mRNA 40479 42041 0.858231 - . ID=CGI_10016418; scaffold1241 WUBlastX LTR_Gypsy 40479 42041 257 + . . scaffold1241 GLEAN mRNA 52523 53147 0.858231 - . ID=CGI_10016418; scaffold1241 TRF Tandem_Repeat 52523 53147 911 + . . scaffold1241 GLEAN mRNA 76604 76635 0.439922 - . ID=CGI_10016421; scaffold1241 TRF Tandem_Repeat 76604 76635 64 + . . scaffold1241 GLEAN mRNA 78145 78259 0.439922 - . ID=CGI_10016421; scaffold1241 TRF Tandem_Repeat 78145 78259 74 + . . scaffold1241 GLEAN mRNA 78487 78580 0.439922 - . ID=CGI_10016421; scaffold1241 TRF Tandem_Repeat 78487 78580 50 + . . scaffold1241 GLEAN mRNA 79074 79468 0.439922 - . ID=CGI_10016421; scaffold1241 TRF Tandem_Repeat 79074 79468 592 + . . scaffold1241 GLEAN mRNA 153294 153324 0.321458 + . ID=CGI_10016426; scaffold1241 TRF Tandem_Repeat 153294 153324 53 + . . scaffold1241 GLEAN mRNA 158448 159257 0.555898 - . ID=CGI_10016428; scaffold1241 WUBlastX LTR_Gypsy 158448 159257 85 - . . scaffold1241 GLEAN mRNA 158403 159107 0.555898 - . ID=CGI_10016428; scaffold1241 WUBlastX LTR_Gypsy-Cigr 158403 159107 189 - . . scaffold1241 GLEAN mRNA 158256 158948 0.555898 - . ID=CGI_10016428; scaffold1241 WUBlastX LTR_Gypsy 158256 158948 29 - . . scaffold1241 GLEAN mRNA 230854 230883 0.65035 - . ID=CGI_10016431; scaffold1241 TRF Tandem_Repeat 230854 230883 60 + . . scaffold1241 GLEAN mRNA 245143 245211 0.65035 - . ID=CGI_10016431; scaffold1241 TRF Tandem_Repeat 245143 245211 72 + . . scaffold1241 GLEAN mRNA 246129 246180 0.65035 - . ID=CGI_10016431; scaffold1241 TRF Tandem_Repeat 246129 246180 104 + . . scaffold1241 GLEAN mRNA 248004 248040 0.65035 - . ID=CGI_10016431; scaffold1241 TRF Tandem_Repeat 248004 248040 74 + . . scaffold1241 GLEAN mRNA 248271 248391 0.65035 - . ID=CGI_10016431; scaffold1241 TRF Tandem_Repeat 248271 248391 131 + . . scaffold1241 GLEAN mRNA 255971 256024 0.65035 - . ID=CGI_10016431; scaffold1241 TRF Tandem_Repeat 255971 256024 74 + . . scaffold1241 GLEAN mRNA 260250 260366 0.65035 - . ID=CGI_10016431; scaffold1241 WUBlastX LINE_RTE-X 260250 260366 29 + . . scaffold1241 GLEAN mRNA 260390 260518 0.65035 - . ID=CGI_10016431; scaffold1241 WUBlastX LINE_RTE-X 260390 260518 50 + . . scaffold1241 GLEAN mRNA 260396 260545 0.65035 - . ID=CGI_10016431; scaffold1241 WUBlastX LINE_RTE-X 260396 260545 34 + . . scaffold1241 GLEAN mRNA 330764 330934 0.999796 + . ID=CGI_10016436; scaffold1241 WUBlastX LINE_L2 330764 330934 22 + . . scaffold1241 GLEAN mRNA 331492 332895 0.999796 + . ID=CGI_10016436; scaffold1241 WUBlastX LINE_RTE-X 331492 332895 620 + . . scaffold1241 GLEAN mRNA 330448 330513 0.999796 + . ID=CGI_10016436; scaffold1241 WUBlastX LINE_L1 330448 330513 25 + . . scaffold1241 GLEAN mRNA 375158 375200 0.999576 - . ID=CGI_10016437; scaffold1241 TRF Tandem_Repeat 375158 375200 79 + . . scaffold1241 GLEAN mRNA 386050 386122 0.999576 - . ID=CGI_10016437; scaffold1241 TRF Tandem_Repeat 386050 386122 128 + . . scaffold1241 GLEAN mRNA 410504 410533 0.999351 + . ID=CGI_10016438; scaffold1241 TRF Tandem_Repeat 410504 410804 514 + . . scaffold756 GLEAN mRNA 35480 35525 1 + . ID=CGI_10016450; scaffold756 TRF Tandem_Repeat 35480 35525 51 + . . scaffold756 GLEAN mRNA 40008 40056 1 + . ID=CGI_10016450; scaffold756 TRF Tandem_Repeat 40008 40056 98 + . . scaffold756 GLEAN mRNA 73613 73959 1 - . ID=CGI_10016453; scaffold756 TRF Tandem_Repeat 73613 73959 398 + . . scaffold756 GLEAN mRNA 74624 74926 1 - . ID=CGI_10016453; scaffold756 TRF Tandem_Repeat 74624 74926 336 + . . scaffold756 GLEAN mRNA 74624 74926 1 - . ID=CGI_10016453; scaffold756 TRF Tandem_Repeat 74624 74926 318 + . . scaffold756 GLEAN mRNA 74624 74928 1 - . ID=CGI_10016453; scaffold756 TRF Tandem_Repeat 74624 74928 380 + . . scaffold756 GLEAN mRNA 76418 76583 1 - . ID=CGI_10016453; scaffold756 TRF Tandem_Repeat 76418 76583 219 + . . scaffold756 GLEAN mRNA 87146 87186 1 - . ID=CGI_10016455; scaffold756 TRF Tandem_Repeat 87146 87186 82 + . . scaffold756 GLEAN mRNA 88330 88373 1 - . ID=CGI_10016455; scaffold756 TRF Tandem_Repeat 88330 88373 88 + . . scaffold756 GLEAN mRNA 187376 187400 0.721563 + . ID=CGI_10016458; scaffold756 TRF Tandem_Repeat 187376 187400 50 + . . scaffold756 GLEAN mRNA 187554 187619 0.721563 + . ID=CGI_10016458; scaffold756 TRF Tandem_Repeat 187554 187619 125 + . . scaffold756 GLEAN mRNA 180315 180770 0.721563 + . ID=CGI_10016458; scaffold756 WUBlastX LTR_Pao 180315 180770 170 - . . scaffold756 GLEAN mRNA 180333 180701 0.721563 + . ID=CGI_10016458; scaffold756 WUBlastX LTR_Pao 180333 180701 388 - . . scaffold756 GLEAN mRNA 179720 180355 0.721563 + . ID=CGI_10016458; scaffold756 WUBlastX LTR_Pao 179720 180355 683 - . . scaffold756 GLEAN mRNA 205803 205852 0.354252 + . ID=CGI_10016460; scaffold756 TRF Tandem_Repeat 205803 205852 100 + . . scaffold756 GLEAN mRNA 207751 208094 0.354252 + . ID=CGI_10016460; scaffold756 TRF Tandem_Repeat 207751 208094 634 + . . scaffold756 GLEAN mRNA 209736 210034 0.354252 + . ID=CGI_10016460; scaffold756 TRF Tandem_Repeat 209736 210034 319 + . . scaffold756 GLEAN mRNA 209736 210024 0.354252 + . ID=CGI_10016460; scaffold756 TRF Tandem_Repeat 209736 210024 342 + . . scaffold756 GLEAN mRNA 221069 221167 0.354252 + . ID=CGI_10016460; scaffold756 TRF Tandem_Repeat 221069 221167 76 + . . scaffold756 GLEAN mRNA 238118 238217 0.261655 + . ID=CGI_10016461; scaffold756 TRF Tandem_Repeat 238118 238217 97 + . . scaffold756 GLEAN mRNA 242974 243021 0.261655 + . ID=CGI_10016461; scaffold756 TRF Tandem_Repeat 242974 243021 78 + . . scaffold756 GLEAN mRNA 241208 241459 0.261655 + . ID=CGI_10016461; scaffold756 WUBlastX DNA_Maverick 241208 241459 75 + . . scaffold756 GLEAN mRNA 241208 241513 0.261655 + . ID=CGI_10016461; scaffold756 WUBlastX DNA_Maverick 241208 241513 70 + . . scaffold756 GLEAN mRNA 301653 301736 0.993908 - . ID=CGI_10016463; scaffold756 TRF Tandem_Repeat 301653 301736 161 + . . scaffold756 GLEAN mRNA 310277 310368 0.993908 - . ID=CGI_10016463; scaffold756 TRF Tandem_Repeat 310277 310368 89 + . . scaffold756 GLEAN mRNA 310447 310604 0.993908 - . ID=CGI_10016463; scaffold756 TRF Tandem_Repeat 310447 310604 160 + . . scaffold756 GLEAN mRNA 310834 310927 0.993908 - . ID=CGI_10016463; scaffold756 TRF Tandem_Repeat 310834 310927 91 + . . scaffold756 GLEAN mRNA 343080 343475 0.789635 - . ID=CGI_10016464; scaffold756 WUBlastX DNA_IS4EU 343080 343475 91 - . . scaffold756 GLEAN mRNA 342731 342898 0.789635 - . ID=CGI_10016464; scaffold756 WUBlastX DNA_IS4EU 342731 342898 44 - . . scaffold756 GLEAN mRNA 343080 343727 0.789635 - . ID=CGI_10016464; scaffold756 WUBlastX DNA_IS4EU 343080 343727 62 - . . scaffold756 GLEAN mRNA 343020 343568 0.789635 - . ID=CGI_10016464; scaffold756 WUBlastX DNA_Kolobok-IS4 343020 343568 67 - . . scaffold756 GLEAN mRNA 353249 353437 0.789635 - . ID=CGI_10016464; scaffold756 WUBlastX LTR_Gypsy 353249 355486 771 - . . scaffold756 GLEAN mRNA 353009 353437 0.789635 - . ID=CGI_10016464; scaffold756 WUBlastX LTR_Gypsy 353009 354403 277 - . . scaffold756 GLEAN mRNA 352911 353207 0.789635 - . ID=CGI_10016464; scaffold756 WUBlastX LTR_Gypsy 352911 353207 28 - . . scaffold756 GLEAN mRNA 418842 420022 0.468321 - . ID=CGI_10016466; scaffold756 TRF Tandem_Repeat 418842 420022 1280 + . . scaffold756 GLEAN mRNA 421292 421531 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 421292 421531 32 - . . scaffold756 GLEAN mRNA 421536 422210 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 421536 422210 308 - . . scaffold756 GLEAN mRNA 422207 422722 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 422207 422722 313 - . . scaffold756 GLEAN mRNA 422676 423317 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 422676 423317 373 - . . scaffold756 GLEAN mRNA 423338 423742 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 423338 423742 143 - . . scaffold756 GLEAN mRNA 423332 423931 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 423332 423931 27 - . . scaffold756 GLEAN mRNA 423314 423811 0.468321 - . ID=CGI_10016466; scaffold756 WUBlastX LINE_L2 423314 423811 36 - . . scaffold756 GLEAN mRNA 435625 435715 0.998247 - . ID=CGI_10016467; scaffold756 TRF Tandem_Repeat 435625 435715 146 + . . scaffold756 GLEAN mRNA 437215 437378 0.998247 - . ID=CGI_10016467; scaffold756 TRF Tandem_Repeat 437215 437378 127 + . . scaffold756 GLEAN mRNA 437214 437332 0.998247 - . ID=CGI_10016467; scaffold756 TRF Tandem_Repeat 437214 437332 110 + . . scaffold756 GLEAN mRNA 457111 457155 0.998247 - . ID=CGI_10016467; scaffold756 TRF Tandem_Repeat 457111 457155 72 + . . scaffold756 GLEAN mRNA 456448 456489 0.998247 - . ID=CGI_10016467; scaffold756 WUBlastX LINE_I 456448 456489 23 - . . scaffold756 GLEAN mRNA 454387 455967 0.998247 - . ID=CGI_10016467; scaffold756 WUBlastX LINE_L2 454387 455967 936 - . . scaffold712 GLEAN mRNA 6285 7751 0.999092 - . ID=CGI_10016469; scaffold712 TRF Tandem_Repeat 6285 7751 720 + . . scaffold712 GLEAN mRNA 6452 7752 0.999092 - . ID=CGI_10016469; scaffold712 TRF Tandem_Repeat 6452 7752 1773 + . . scaffold712 GLEAN mRNA 8834 9602 0.999092 - . ID=CGI_10016469; scaffold712 TRF Tandem_Repeat 8834 9602 778 + . . scaffold712 GLEAN mRNA 8836 9602 0.999092 - . ID=CGI_10016469; scaffold712 TRF Tandem_Repeat 8836 9602 943 + . . scaffold712 GLEAN mRNA 8834 9593 0.999092 - . ID=CGI_10016469; scaffold712 TRF Tandem_Repeat 8834 9593 958 + . . scaffold712 GLEAN mRNA 8835 9593 0.999092 - . ID=CGI_10016469; scaffold712 TRF Tandem_Repeat 8835 9593 911 + . . scaffold712 GLEAN mRNA 9331 9421 0.999092 - . ID=CGI_10016469; scaffold712 TRF Tandem_Repeat 9331 9421 74 + . . scaffold712 GLEAN mRNA 16897 17103 0.249757 + . ID=CGI_10016470; scaffold712 TRF Tandem_Repeat 16897 17103 265 + . . scaffold712 GLEAN mRNA 16897 17162 0.249757 + . ID=CGI_10016470; scaffold712 TRF Tandem_Repeat 16897 17162 274 + . . scaffold712 GLEAN mRNA 16897 17162 0.249757 + . ID=CGI_10016470; scaffold712 TRF Tandem_Repeat 16897 17162 320 + . . scaffold712 GLEAN mRNA 22699 22960 0.249757 + . ID=CGI_10016470; scaffold712 TRF Tandem_Repeat 22699 22960 461 + . . scaffold712 GLEAN mRNA 22699 22960 0.99935 - . ID=CGI_10016472; scaffold712 TRF Tandem_Repeat 22699 22960 461 + . . scaffold712 GLEAN mRNA 39087 39126 0.99935 - . ID=CGI_10016472; scaffold712 TRF Tandem_Repeat 39087 39126 80 + . . scaffold712 GLEAN mRNA 52405 52437 1 + . ID=CGI_10016474; scaffold712 TRF Tandem_Repeat 52405 52437 66 + . . scaffold712 GLEAN mRNA 65025 65070 1 - . ID=CGI_10016475; scaffold712 TRF Tandem_Repeat 65025 65070 92 + . . scaffold712 GLEAN mRNA 151940 151974 1 + . ID=CGI_10016478; scaffold712 TRF Tandem_Repeat 151940 151974 61 + . . scaffold712 GLEAN mRNA 152593 152640 1 + . ID=CGI_10016478; scaffold712 TRF Tandem_Repeat 152593 152640 60 + . . scaffold712 GLEAN mRNA 153983 155566 1 + . ID=CGI_10016478; scaffold712 WUBlastX LINE_L1 153983 155566 315 - . . scaffold712 GLEAN mRNA 153728 154975 1 + . ID=CGI_10016478; scaffold712 WUBlastX LINE_L1 153728 154975 289 - . . scaffold712 GLEAN mRNA 152784 153791 1 + . ID=CGI_10016478; scaffold712 WUBlastX LINE_L1-Tx1 152784 153791 120 - . . scaffold712 GLEAN mRNA 153965 155245 1 + . ID=CGI_10016478; scaffold712 WUBlastX LINE_L1-Tx1 153965 155245 504 - . . scaffold712 GLEAN mRNA 155787 155897 1 + . ID=CGI_10016478; scaffold712 WUBlastX LINE_Jockey 155787 155897 29 - . . scaffold712 GLEAN mRNA 318514 318671 1 + . ID=CGI_10016482; scaffold712 TRF Tandem_Repeat 318514 318671 149 + . . scaffold712 GLEAN mRNA 329599 329825 0.992758 + . ID=CGI_10016483; scaffold712 TRF Tandem_Repeat 329599 329825 192 + . . scaffold712 GLEAN mRNA 338837 338904 0.995237 + . ID=CGI_10016485; scaffold712 TRF Tandem_Repeat 338837 338904 136 + . . scaffold712 GLEAN mRNA 343073 343858 0.995237 + . ID=CGI_10016485; scaffold712 WUBlastX LINE_R2-Hero 343073 343858 130 + . . scaffold712 GLEAN mRNA 345841 345874 0.995237 + . ID=CGI_10016485; scaffold712 TRF Tandem_Repeat 345841 345874 59 + . . scaffold712 GLEAN mRNA 344996 345343 0.995237 + . ID=CGI_10016485; scaffold712 WUBlastX LINE_R2-Hero 344996 345343 245 + . . scaffold712 GLEAN mRNA 345475 346533 0.995237 + . ID=CGI_10016485; scaffold712 WUBlastX LINE_R2-Hero 345475 346533 289 + . . scaffold712 GLEAN mRNA 345336 345470 0.995237 + . ID=CGI_10016485; scaffold712 WUBlastX LINE_R2-Hero 345336 345470 61 + . . scaffold712 GLEAN mRNA 343404 344411 0.995237 + . ID=CGI_10016485; scaffold712 WUBlastX LINE_R2-Hero 343404 344411 499 + . . scaffold712 GLEAN mRNA 375082 375125 0.993906 - . ID=CGI_10016487; scaffold712 TRF Tandem_Repeat 375082 375125 61 + . . scaffold712 GLEAN mRNA 411879 411934 0.613636 - . ID=CGI_10016489; scaffold712 TRF Tandem_Repeat 411879 411934 76 + . . scaffold712 GLEAN mRNA 426553 426604 0.613636 - . ID=CGI_10016489; scaffold712 TRF Tandem_Repeat 426553 426604 52 + . . scaffold712 GLEAN mRNA 429117 429146 0.613636 - . ID=CGI_10016489; scaffold712 TRF Tandem_Repeat 429117 429146 60 + . . scaffold712 GLEAN mRNA 436818 437261 0.613636 - . ID=CGI_10016489; scaffold712 WUBlastX LINE_CR1 436818 437261 251 + . . scaffold712 GLEAN mRNA 436833 437345 0.613636 - . ID=CGI_10016489; scaffold712 WUBlastX LINE_CR1-L2 436833 437345 81 + . . scaffold712 GLEAN mRNA 436650 437264 0.613636 - . ID=CGI_10016489; scaffold712 WUBlastX LINE_CR1 436650 437264 218 + . . scaffold712 GLEAN mRNA 440552 441142 0.613636 - . ID=CGI_10016489; scaffold712 WUBlastX DNA_TcMar-Tc1 440552 441142 134 - . . scaffold712 GLEAN mRNA 440753 441223 0.613636 - . ID=CGI_10016489; scaffold712 WUBlastX DNA_TcMar-Tc1 440753 441223 62 - . . scaffold712 GLEAN mRNA 440729 441148 0.613636 - . ID=CGI_10016489; scaffold712 WUBlastX DNA_TcMar-Tc1 440729 441148 160 - . . scaffold712 GLEAN mRNA 444688 444933 0.613636 - . ID=CGI_10016489; scaffold712 WUBlastX DNA_TcMar-Tc1 444688 444933 83 - . . scaffold1610 GLEAN mRNA 22722 22760 0.948802 - . ID=CGI_10016490; scaffold1610 TRF Tandem_Repeat 22722 22760 78 + . . scaffold1610 GLEAN mRNA 26628 26677 0.948802 - . ID=CGI_10016490; scaffold1610 TRF Tandem_Repeat 26628 26677 100 + . . scaffold1610 GLEAN mRNA 26677 26716 0.948802 - . ID=CGI_10016490; scaffold1610 TRF Tandem_Repeat 26677 26716 80 + . . scaffold1610 GLEAN mRNA 27698 27747 0.948802 - . ID=CGI_10016490; scaffold1610 TRF Tandem_Repeat 27698 27747 100 + . . scaffold1610 GLEAN mRNA 29808 29889 0.948802 - . ID=CGI_10016490; scaffold1610 TRF Tandem_Repeat 29808 29889 119 + . . scaffold1610 GLEAN mRNA 29808 29889 0.948802 - . ID=CGI_10016490; scaffold1610 TRF Tandem_Repeat 29808 29889 137 + . . scaffold1610 GLEAN mRNA 33480 33512 0.948802 - . ID=CGI_10016490; scaffold1610 TRF Tandem_Repeat 33480 33512 50 + . . scaffold1610 GLEAN mRNA 33827 33894 0.948802 - . ID=CGI_10016490; scaffold1610 TRF Tandem_Repeat 33827 33894 136 + . . scaffold1610 GLEAN mRNA 33979 34027 0.948802 - . ID=CGI_10016490; scaffold1610 TRF Tandem_Repeat 33979 34027 98 + . . scaffold1610 GLEAN mRNA 40369 40429 1 + . ID=CGI_10016491; scaffold1610 TRF Tandem_Repeat 40369 40429 122 + . . scaffold1610 GLEAN mRNA 49366 50097 0.760342 - . ID=CGI_10016492; scaffold1610 TRF Tandem_Repeat 49366 50097 975 + . . scaffold1610 GLEAN mRNA 51448 51501 0.760342 - . ID=CGI_10016492; scaffold1610 TRF Tandem_Repeat 51448 51501 74 + . . scaffold1610 GLEAN mRNA 62063 62123 0.760342 - . ID=CGI_10016492; scaffold1610 TRF Tandem_Repeat 62063 62123 50 + . . scaffold1610 GLEAN mRNA 119334 119393 1 + . ID=CGI_10016495; scaffold1610 TRF Tandem_Repeat 119334 119393 54 + . . scaffold1610 GLEAN mRNA 177671 177714 1 - . ID=CGI_10016498; scaffold1610 TRF Tandem_Repeat 177671 177714 61 + . . scaffold1610 GLEAN mRNA 181880 182202 1 - . ID=CGI_10016498; scaffold1610 TRF Tandem_Repeat 181880 182202 173 + . . scaffold1610 GLEAN mRNA 218010 218042 0.572471 + . ID=CGI_10016501; scaffold1610 TRF Tandem_Repeat 218010 218042 59 + . . scaffold1610 GLEAN mRNA 232632 232691 0.862915 + . ID=CGI_10016503; scaffold1610 TRF Tandem_Repeat 232632 232691 56 + . . scaffold1610 GLEAN mRNA 232641 232691 0.862915 + . ID=CGI_10016503; scaffold1610 TRF Tandem_Repeat 232641 232691 66 + . . scaffold1610 GLEAN mRNA 232646 232690 0.862915 + . ID=CGI_10016503; scaffold1610 TRF Tandem_Repeat 232646 232690 65 + . . scaffold1610 GLEAN mRNA 238453 238497 0.862915 + . ID=CGI_10016503; scaffold1610 TRF Tandem_Repeat 238453 238497 90 + . . scaffold1610 GLEAN mRNA 229664 229867 0.862915 + . ID=CGI_10016503; scaffold1610 WUBlastX DNA_Kolobok-IS4 229664 229867 44 + . . scaffold1610 GLEAN mRNA 265847 265904 0.51314 - . ID=CGI_10016504; scaffold1610 TRF Tandem_Repeat 265847 265904 116 + . . scaffold1610 GLEAN mRNA 265951 265978 0.51314 - . ID=CGI_10016504; scaffold1610 TRF Tandem_Repeat 265951 265978 56 + . . scaffold1610 GLEAN mRNA 275940 276001 1 - . ID=CGI_10016506; scaffold1610 TRF Tandem_Repeat 275940 276001 124 + . . scaffold1610 GLEAN mRNA 277727 277784 1 - . ID=CGI_10016506; scaffold1610 TRF Tandem_Repeat 277727 277784 116 + . . scaffold1610 GLEAN mRNA 284498 284547 1 + . ID=CGI_10016507; scaffold1610 TRF Tandem_Repeat 284498 284547 57 + . . scaffold1610 GLEAN mRNA 284498 284547 1 + . ID=CGI_10016507; scaffold1610 TRF Tandem_Repeat 284498 284547 55 + . . scaffold1610 GLEAN mRNA 284571 285364 1 + . ID=CGI_10016507; scaffold1610 TRF Tandem_Repeat 284571 285364 1097 + . . scaffold1610 GLEAN mRNA 298067 298919 1 + . ID=CGI_10016507; scaffold1610 TRF Tandem_Repeat 298067 298919 1016 + . . scaffold1610 GLEAN mRNA 298941 299312 1 + . ID=CGI_10016507; scaffold1610 TRF Tandem_Repeat 298941 299312 488 + . . scaffold1610 GLEAN mRNA 317751 317785 0.999415 + . ID=CGI_10016510; scaffold1610 TRF Tandem_Repeat 317751 317785 61 + . . scaffold1610 GLEAN mRNA 317955 319154 0.999415 + . ID=CGI_10016510; scaffold1610 TRF Tandem_Repeat 317955 319154 1845 + . . scaffold1610 GLEAN mRNA 330596 330637 0.999415 + . ID=CGI_10016510; scaffold1610 TRF Tandem_Repeat 330596 330637 84 + . . scaffold1610 GLEAN mRNA 345490 345537 0.544498 + . ID=CGI_10016512; scaffold1610 TRF Tandem_Repeat 345490 345537 96 + . . scaffold1610 GLEAN mRNA 361636 361688 0.654084 + . ID=CGI_10016513; scaffold1610 TRF Tandem_Repeat 361636 361688 106 + . . scaffold1610 GLEAN mRNA 426359 427155 0.999676 + . ID=CGI_10016516; scaffold1610 TRF Tandem_Repeat 426359 427155 1011 + . . scaffold1083 GLEAN mRNA 106722 107800 0.996608 + . ID=CGI_10016525; scaffold1083 TRF Tandem_Repeat 106722 107800 1509 + . . scaffold1083 GLEAN mRNA 115907 115937 0.734569 - . ID=CGI_10016526; scaffold1083 TRF Tandem_Repeat 115907 115937 55 + . . scaffold1083 GLEAN mRNA 130895 130957 0.573492 - . ID=CGI_10016527; scaffold1083 TRF Tandem_Repeat 130895 130957 103 + . . scaffold1083 GLEAN mRNA 131175 131228 0.573492 - . ID=CGI_10016527; scaffold1083 TRF Tandem_Repeat 131175 131228 108 + . . scaffold1083 GLEAN mRNA 259663 259762 1 + . ID=CGI_10016535; scaffold1083 TRF Tandem_Repeat 259663 259762 107 + . . scaffold1083 GLEAN mRNA 259572 259760 1 + . ID=CGI_10016535; scaffold1083 TRF Tandem_Repeat 259572 259760 99 + . . scaffold1083 GLEAN mRNA 282634 282696 1 + . ID=CGI_10016537; scaffold1083 TRF Tandem_Repeat 282634 282696 108 + . . scaffold1083 GLEAN mRNA 348642 348678 0.999999 - . ID=CGI_10016541; scaffold1083 TRF Tandem_Repeat 348642 348678 74 + . . scaffold1083 GLEAN mRNA 363820 364168 1 - . ID=CGI_10016542; scaffold1083 TRF Tandem_Repeat 363820 364168 583 + . . scaffold1083 GLEAN mRNA 417180 417209 0.989532 - . ID=CGI_10016547; scaffold1083 TRF Tandem_Repeat 417180 417209 60 + . . scaffold1083 GLEAN mRNA 445697 445812 0.956475 + . ID=CGI_10016548; scaffold1083 TRF Tandem_Repeat 445697 445812 81 + . . scaffold1083 GLEAN mRNA 456202 456228 0.956475 + . ID=CGI_10016548; scaffold1083 TRF Tandem_Repeat 456202 456228 54 + . . scaffold1083 GLEAN mRNA 456226 456275 0.956475 + . ID=CGI_10016548; scaffold1083 TRF Tandem_Repeat 456226 456275 91 + . . scaffold304 GLEAN mRNA 99360 99578 0.999366 + . ID=CGI_10016550; scaffold304 WUBlastX DNA_Kolobok-IS4 99048 99578 69 + . . scaffold304 GLEAN mRNA 153343 153627 0.999344 - . ID=CGI_10016552; scaffold304 WUBlastX LTR_ERV1 153343 153627 39 - . . scaffold304 GLEAN mRNA 176843 176878 1 - . ID=CGI_10016555; scaffold304 TRF Tandem_Repeat 176843 176878 63 + . . scaffold304 GLEAN mRNA 194702 195161 0.686393 + . ID=CGI_10016556; scaffold304 TRF Tandem_Repeat 194702 195161 832 + . . scaffold304 GLEAN mRNA 251635 251879 0.999945 - . ID=CGI_10016563; scaffold304 TRF Tandem_Repeat 251635 251879 187 + . . scaffold304 GLEAN mRNA 335057 335187 0.999019 - . ID=CGI_10016567; scaffold304 TRF Tandem_Repeat 335057 335187 149 + . . scaffold304 GLEAN mRNA 335427 335600 0.999019 - . ID=CGI_10016567; scaffold304 WUBlastX LINE_L1 335427 335600 81 + . . scaffold304 GLEAN mRNA 333932 334354 0.999019 - . ID=CGI_10016567; scaffold304 WUBlastX LTR_Ngaro 333932 334354 74 + . . scaffold304 GLEAN mRNA 334073 334357 0.999019 - . ID=CGI_10016567; scaffold304 WUBlastX LTR_Ngaro 334073 334357 116 + . . scaffold304 GLEAN mRNA 329100 329300 0.999019 - . ID=CGI_10016567; scaffold304 WUBlastX LINE_RTE-BovB 329100 329300 88 - . . scaffold304 GLEAN mRNA 399321 399382 0.987296 + . ID=CGI_10016569; scaffold304 TRF Tandem_Repeat 399321 399382 124 + . . scaffold304 GLEAN mRNA 399533 399576 0.987296 + . ID=CGI_10016569; scaffold304 TRF Tandem_Repeat 399533 399576 52 + . . scaffold304 GLEAN mRNA 399541 399577 0.987296 + . ID=CGI_10016569; scaffold304 TRF Tandem_Repeat 399541 399577 65 + . . scaffold304 GLEAN mRNA 399850 399992 0.987296 + . ID=CGI_10016569; scaffold304 TRF Tandem_Repeat 399850 399992 124 + . . scaffold304 GLEAN mRNA 399841 399988 0.987296 + . ID=CGI_10016569; scaffold304 TRF Tandem_Repeat 399841 399988 145 + . . scaffold304 GLEAN mRNA 425810 425876 0.988081 + . ID=CGI_10016570; scaffold304 TRF Tandem_Repeat 425810 425876 134 + . . scaffold304 GLEAN mRNA 430428 430484 0.988081 + . ID=CGI_10016570; scaffold304 TRF Tandem_Repeat 430428 430484 114 + . . scaffold304 GLEAN mRNA 444327 444385 0.989519 - . ID=CGI_10016571; scaffold304 TRF Tandem_Repeat 444327 444385 118 + . . scaffold304 GLEAN mRNA 444395 444447 0.989519 - . ID=CGI_10016571; scaffold304 TRF Tandem_Repeat 444395 444447 106 + . . scaffold772 GLEAN mRNA 19526 19838 0.728086 - . ID=CGI_10016573; scaffold772 TRF Tandem_Repeat 19526 19838 366 + . . scaffold772 GLEAN mRNA 23322 23365 0.728086 - . ID=CGI_10016573; scaffold772 TRF Tandem_Repeat 23322 23365 63 + . . scaffold772 GLEAN mRNA 37718 37755 0.999897 - . ID=CGI_10016575; scaffold772 TRF Tandem_Repeat 37718 37755 76 + . . scaffold772 GLEAN mRNA 40120 40165 0.999897 - . ID=CGI_10016575; scaffold772 TRF Tandem_Repeat 40120 40165 92 + . . scaffold772 GLEAN mRNA 41295 41333 0.999897 - . ID=CGI_10016575; scaffold772 TRF Tandem_Repeat 41295 41333 51 + . . scaffold772 GLEAN mRNA 49950 50005 0.999897 - . ID=CGI_10016575; scaffold772 TRF Tandem_Repeat 49950 50005 112 + . . scaffold772 GLEAN mRNA 51801 51859 0.999897 - . ID=CGI_10016575; scaffold772 TRF Tandem_Repeat 51801 51859 109 + . . scaffold772 GLEAN mRNA 51985 52065 0.999897 - . ID=CGI_10016575; scaffold772 TRF Tandem_Repeat 51985 52065 117 + . . scaffold772 GLEAN mRNA 52980 53025 0.999897 - . ID=CGI_10016575; scaffold772 TRF Tandem_Repeat 52980 53025 83 + . . scaffold772 GLEAN mRNA 53544 53774 0.999897 - . ID=CGI_10016575; scaffold772 WUBlastX LINE_Penelope 53544 53774 52 - . . scaffold772 GLEAN mRNA 53469 53717 0.999897 - . ID=CGI_10016575; scaffold772 WUBlastX LINE_Penelope 53469 53717 38 - . . scaffold772 GLEAN mRNA 53783 53950 0.999897 - . ID=CGI_10016575; scaffold772 WUBlastX LINE_Penelope 53783 53950 38 - . . scaffold772 GLEAN mRNA 53786 53998 0.999897 - . ID=CGI_10016575; scaffold772 WUBlastX LINE_Penelope 53786 53998 27 - . . scaffold772 GLEAN mRNA 57921 58634 0.999897 - . ID=CGI_10016575; scaffold772 WUBlastX LINE_RTE-X 57921 58634 192 + . . scaffold772 GLEAN mRNA 65707 65756 0.999897 - . ID=CGI_10016575; scaffold772 TRF Tandem_Repeat 65707 65756 75 + . . scaffold772 GLEAN mRNA 66137 66200 0.999897 - . ID=CGI_10016575; scaffold772 TRF Tandem_Repeat 66137 66200 110 + . . scaffold772 GLEAN mRNA 64562 65565 0.999897 - . ID=CGI_10016575; scaffold772 TRF Tandem_Repeat 64562 65565 1737 + . . scaffold772 GLEAN mRNA 72794 72849 0.651135 - . ID=CGI_10016576; scaffold772 TRF Tandem_Repeat 72794 72849 112 + . . scaffold772 GLEAN mRNA 79453 79616 1 - . ID=CGI_10016577; scaffold772 TRF Tandem_Repeat 79453 79616 188 + . . scaffold772 GLEAN mRNA 79453 79642 1 - . ID=CGI_10016577; scaffold772 TRF Tandem_Repeat 79453 79642 123 + . . scaffold772 GLEAN mRNA 92531 92601 0.999999 - . ID=CGI_10016579; scaffold772 TRF Tandem_Repeat 92531 92601 79 + . . scaffold772 GLEAN mRNA 147440 147641 0.547627 - . ID=CGI_10016580; scaffold772 TRF Tandem_Repeat 147440 147641 354 + . . scaffold772 GLEAN mRNA 154898 155498 1 + . ID=CGI_10016581; scaffold772 TRF Tandem_Repeat 154898 155498 612 + . . scaffold772 GLEAN mRNA 169358 169525 0.911526 + . ID=CGI_10016583; scaffold772 TRF Tandem_Repeat 169358 169525 291 + . . scaffold772 GLEAN mRNA 177425 177549 1 + . ID=CGI_10016584; scaffold772 TRF Tandem_Repeat 177425 177549 241 + . . scaffold772 GLEAN mRNA 174587 174778 1 + . ID=CGI_10016584; scaffold772 WUBlastX DNA_TcMar-Tc1 174587 174778 90 - . . scaffold772 GLEAN mRNA 174755 175465 1 + . ID=CGI_10016584; scaffold772 WUBlastX DNA_TcMar-Tc1 174755 175465 201 - . . scaffold772 GLEAN mRNA 174656 175300 1 + . ID=CGI_10016584; scaffold772 WUBlastX DNA_TcMar-Tc1 174656 175300 181 - . . scaffold772 GLEAN mRNA 177718 177825 1 + . ID=CGI_10016584; scaffold772 WUBlastX LINE_RTE-BovB 177718 177825 47 - . . scaffold772 GLEAN mRNA 174764 175300 1 + . ID=CGI_10016584; scaffold772 WUBlastX DNA_TcMar-Tc1 174764 175300 222 - . . scaffold772 GLEAN mRNA 242463 242822 0.714694 - . ID=CGI_10016587; scaffold772 WUBlastX DNA_hAT-Blackja 242463 242822 77 + . . scaffold772 GLEAN mRNA 243667 243828 0.714694 - . ID=CGI_10016587; scaffold772 WUBlastX DNA_hAT-hAT5 243667 243828 54 + . . scaffold772 GLEAN mRNA 242445 242873 0.714694 - . ID=CGI_10016587; scaffold772 WUBlastX DNA_hAT-Charlie 242445 242873 63 + . . scaffold772 GLEAN mRNA 242430 242954 0.714694 - . ID=CGI_10016587; scaffold772 WUBlastX DNA_hAT-Blackja 242430 242954 58 + . . scaffold772 GLEAN mRNA 253137 253168 0.714694 - . ID=CGI_10016587; scaffold772 TRF Tandem_Repeat 253137 253168 64 + . . scaffold772 GLEAN mRNA 254089 254130 0.714694 - . ID=CGI_10016587; scaffold772 TRF Tandem_Repeat 254089 254130 84 + . . scaffold772 GLEAN mRNA 256286 256386 0.714694 - . ID=CGI_10016587; scaffold772 TRF Tandem_Repeat 256286 256386 202 + . . scaffold772 GLEAN mRNA 257804 257845 0.714694 - . ID=CGI_10016587; scaffold772 TRF Tandem_Repeat 257804 257845 84 + . . scaffold772 GLEAN mRNA 259830 259883 0.714694 - . ID=CGI_10016587; scaffold772 TRF Tandem_Repeat 259830 259883 74 + . . scaffold772 GLEAN mRNA 272367 273160 0.999981 + . ID=CGI_10016589; scaffold772 TRF Tandem_Repeat 272367 273160 1157 + . . scaffold772 GLEAN mRNA 285389 285679 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 285389 285679 30 + . . scaffold772 GLEAN mRNA 283905 284060 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 283905 284060 50 + . . scaffold772 GLEAN mRNA 282061 282405 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 282061 282405 108 + . . scaffold772 GLEAN mRNA 282127 282486 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 282127 282486 47 + . . scaffold772 GLEAN mRNA 282598 282726 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 282598 282726 73 + . . scaffold772 GLEAN mRNA 285039 285143 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 285039 285143 36 + . . scaffold772 GLEAN mRNA 285176 285244 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 285176 285244 20 + . . scaffold772 GLEAN mRNA 285485 285949 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 285485 285949 154 + . . scaffold772 GLEAN mRNA 281926 282408 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 281926 282408 93 + . . scaffold772 GLEAN mRNA 283352 283471 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 283352 283471 69 + . . scaffold772 GLEAN mRNA 317130 317393 0.756718 + . ID=CGI_10016592; scaffold772 TRF Tandem_Repeat 317130 317393 413 + . . scaffold772 GLEAN mRNA 338912 339397 0.544674 + . ID=CGI_10016594; scaffold772 WUBlastX LINE_RTE-X 338912 339397 117 + . . scaffold772 GLEAN mRNA 339386 339712 0.544674 + . ID=CGI_10016594; scaffold772 WUBlastX LTR_Ngaro 339386 339712 193 + . . scaffold772 GLEAN mRNA 339718 340446 0.544674 + . ID=CGI_10016594; scaffold772 WUBlastX LTR_Ngaro 339718 340446 279 + . . scaffold772 GLEAN mRNA 340543 341367 0.544674 + . ID=CGI_10016594; scaffold772 WUBlastX LTR_Ngaro 340543 341367 305 + . . scaffold524 GLEAN mRNA 52988 53245 0.999451 - . ID=CGI_10016597; scaffold524 WUBlastX DNA_Academ 52988 53512 81 - . . scaffold524 GLEAN mRNA 53042 53245 0.999451 - . ID=CGI_10016597; scaffold524 WUBlastX DNA_Academ 53042 53467 181 - . . scaffold524 GLEAN mRNA 78576 78603 0.53498 - . ID=CGI_10016598; scaffold524 TRF Tandem_Repeat 78576 78603 56 + . . scaffold524 GLEAN mRNA 75683 75988 0.53498 - . ID=CGI_10016598; scaffold524 WUBlastX DNA_Crypton 75683 75988 74 + . . scaffold524 GLEAN mRNA 85917 85965 0.53498 - . ID=CGI_10016598; scaffold524 TRF Tandem_Repeat 85917 85965 89 + . . scaffold524 GLEAN mRNA 87553 87581 0.53498 - . ID=CGI_10016598; scaffold524 TRF Tandem_Repeat 87553 87581 58 + . . scaffold524 GLEAN mRNA 116251 116308 0.999995 - . ID=CGI_10016599; scaffold524 TRF Tandem_Repeat 116251 116308 116 + . . scaffold524 GLEAN mRNA 140821 140867 1 + . ID=CGI_10016600; scaffold524 TRF Tandem_Repeat 140821 140867 94 + . . scaffold524 GLEAN mRNA 141463 141514 1 + . ID=CGI_10016600; scaffold524 TRF Tandem_Repeat 141463 141514 104 + . . scaffold524 GLEAN mRNA 155131 155166 0.623419 - . ID=CGI_10016601; scaffold524 TRF Tandem_Repeat 155131 155166 72 + . . scaffold524 GLEAN mRNA 158413 158716 0.623419 - . ID=CGI_10016601; scaffold524 TRF Tandem_Repeat 158413 158716 325 + . . scaffold524 GLEAN mRNA 158413 158716 0.623419 - . ID=CGI_10016601; scaffold524 TRF Tandem_Repeat 158413 158716 371 + . . scaffold524 GLEAN mRNA 244700 244789 0.734579 - . ID=CGI_10016606; scaffold524 TRF Tandem_Repeat 244700 244789 94 + . . scaffold524 GLEAN mRNA 244802 244840 0.734579 - . ID=CGI_10016606; scaffold524 TRF Tandem_Repeat 244802 244840 51 + . . scaffold524 GLEAN mRNA 251008 251556 0.734579 - . ID=CGI_10016606; scaffold524 WUBlastX DNA_Helitron 251008 251556 116 - . . scaffold524 GLEAN mRNA 250873 251538 0.734579 - . ID=CGI_10016606; scaffold524 WUBlastX RC_Helitron 250873 251538 86 - . . scaffold524 GLEAN mRNA 450511 451125 1 + . ID=CGI_10016612; scaffold524 WUBlastX LINE_L2 450511 451125 38 - . . scaffold524 GLEAN mRNA 450511 450819 1 + . ID=CGI_10016612; scaffold524 WUBlastX LINE_L2 450511 450819 133 - . . scaffold524 GLEAN mRNA 453580 453951 1 + . ID=CGI_10016612; scaffold524 WUBlastX LINE_CR1 453580 453951 39 - . . scaffold524 GLEAN mRNA 453923 453973 1 + . ID=CGI_10016612; scaffold524 WUBlastX LINE_CR1-L2 453923 453973 21 - . . scaffold524 GLEAN mRNA 450514 451032 1 + . ID=CGI_10016612; scaffold524 WUBlastX LINE_L2 450514 451032 46 - . . scaffold524 GLEAN mRNA 453532 453888 1 + . ID=CGI_10016612; scaffold524 WUBlastX LINE_CR1-L2 453532 453888 153 - . . scaffold524 GLEAN mRNA 453245 453556 1 + . ID=CGI_10016612; scaffold524 WUBlastX LINE_CR1-L2 453245 453556 148 - . . scaffold219 GLEAN mRNA 129332 129646 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 129332 129646 161 + . . scaffold219 GLEAN mRNA 129338 130081 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 129338 130081 95 + . . scaffold219 GLEAN mRNA 129251 129643 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 129251 129643 77 + . . scaffold219 GLEAN mRNA 132108 132377 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 132108 132377 119 + . . scaffold219 GLEAN mRNA 132440 132853 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 132440 132853 30 + . . scaffold219 GLEAN mRNA 131870 131938 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1 131870 131938 26 + . . scaffold219 GLEAN mRNA 132111 132458 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 132111 132458 72 + . . scaffold219 GLEAN mRNA 131962 132126 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1 131962 132126 28 + . . scaffold219 GLEAN mRNA 132001 132138 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 132001 132138 37 + . . scaffold219 GLEAN mRNA 130093 131172 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 130093 131172 310 + . . scaffold219 GLEAN mRNA 130651 131295 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_R2 130651 131295 88 + . . scaffold219 GLEAN mRNA 177875 177918 0.991296 + . ID=CGI_10016618; scaffold219 TRF Tandem_Repeat 177875 177918 52 + . . scaffold219 GLEAN mRNA 204367 204410 0.991296 + . ID=CGI_10016618; scaffold219 TRF Tandem_Repeat 204367 204410 70 + . . scaffold219 GLEAN mRNA 204380 204413 0.991296 + . ID=CGI_10016618; scaffold219 TRF Tandem_Repeat 204380 204413 50 + . . scaffold219 GLEAN mRNA 208766 209591 0.991296 + . ID=CGI_10016618; scaffold219 TRF Tandem_Repeat 208766 209591 1119 + . . scaffold219 GLEAN mRNA 212530 214254 0.991296 + . ID=CGI_10016618; scaffold219 TRF Tandem_Repeat 212530 214254 2035 + . . scaffold219 GLEAN mRNA 221187 221254 0.614327 - . ID=CGI_10016619; scaffold219 TRF Tandem_Repeat 221187 221254 91 + . . scaffold219 GLEAN mRNA 226830 228486 1 + . ID=CGI_10016620; scaffold219 TRF Tandem_Repeat 226830 228486 1669 + . . scaffold219 GLEAN mRNA 251545 252227 0.999949 + . ID=CGI_10016622; scaffold219 TRF Tandem_Repeat 251545 252227 956 + . . scaffold219 GLEAN mRNA 259588 259822 0.995712 - . ID=CGI_10016623; scaffold219 TRF Tandem_Repeat 259588 259822 328 + . . scaffold219 GLEAN mRNA 291701 291937 0.843729 - . ID=CGI_10016628; scaffold219 WUBlastX LINE_RTE-X 291701 291937 68 + . . scaffold219 GLEAN mRNA 296749 296777 0.843729 - . ID=CGI_10016628; scaffold219 TRF Tandem_Repeat 296749 296777 58 + . . scaffold219 GLEAN mRNA 307489 308621 0.999977 + . ID=CGI_10016630; scaffold219 TRF Tandem_Repeat 307489 308621 1648 + . . scaffold219 GLEAN mRNA 331188 331224 0.99454 - . ID=CGI_10016631; scaffold219 TRF Tandem_Repeat 331188 331224 74 + . . scaffold219 GLEAN mRNA 371266 371322 0.999676 + . ID=CGI_10016632; scaffold219 TRF Tandem_Repeat 371266 371322 114 + . . scaffold219 GLEAN mRNA 388204 388256 1 + . ID=CGI_10016633; scaffold219 TRF Tandem_Repeat 388204 388256 106 + . . scaffold714 GLEAN mRNA 57964 58005 0.898295 + . ID=CGI_10016639; scaffold714 TRF Tandem_Repeat 57964 58005 84 + . . scaffold714 GLEAN mRNA 62500 62532 0.898295 + . ID=CGI_10016639; scaffold714 TRF Tandem_Repeat 62500 62532 57 + . . scaffold714 GLEAN mRNA 77165 77216 0.727136 + . ID=CGI_10016640; scaffold714 TRF Tandem_Repeat 77165 77216 63 + . . scaffold714 GLEAN mRNA 77239 77282 0.727136 + . ID=CGI_10016640; scaffold714 TRF Tandem_Repeat 77239 77282 88 + . . scaffold714 GLEAN mRNA 79272 79311 0.727136 + . ID=CGI_10016640; scaffold714 TRF Tandem_Repeat 79272 79311 80 + . . scaffold714 GLEAN mRNA 83727 83764 0.727136 + . ID=CGI_10016640; scaffold714 TRF Tandem_Repeat 83727 83764 76 + . . scaffold714 GLEAN mRNA 91750 91775 0.727136 + . ID=CGI_10016640; scaffold714 TRF Tandem_Repeat 91750 91775 52 + . . scaffold714 GLEAN mRNA 88003 88404 0.727136 + . ID=CGI_10016640; scaffold714 WUBlastX DNA_TcMar-Tc1 88003 88404 187 - . . scaffold714 GLEAN mRNA 88340 88702 0.727136 + . ID=CGI_10016640; scaffold714 WUBlastX DNA_TcMar-Tc1 88340 88702 103 - . . scaffold714 GLEAN mRNA 88707 88901 0.727136 + . ID=CGI_10016640; scaffold714 WUBlastX DNA_TcMar-Tc1 88707 88901 44 - . . scaffold714 GLEAN mRNA 88385 88765 0.727136 + . ID=CGI_10016640; scaffold714 WUBlastX DNA_TcMar-Tc1 88385 88765 78 - . . scaffold714 GLEAN mRNA 87952 88245 0.727136 + . ID=CGI_10016640; scaffold714 WUBlastX DNA_TcMar-Marin 87952 88245 26 - . . scaffold714 GLEAN mRNA 256234 256929 0.677949 + . ID=CGI_10016643; scaffold714 TRF Tandem_Repeat 256234 256929 899 + . . scaffold714 GLEAN mRNA 248414 248509 0.677949 + . ID=CGI_10016643; scaffold714 WUBlastX LINE_RTE-X 248414 248509 37 + . . scaffold714 GLEAN mRNA 262579 262692 0.677949 + . ID=CGI_10016643; scaffold714 TRF Tandem_Repeat 262579 262692 115 + . . scaffold714 GLEAN mRNA 388969 389046 0.999675 - . ID=CGI_10016647; scaffold714 TRF Tandem_Repeat 388969 389046 61 + . . scaffold714 GLEAN mRNA 392153 392302 0.999675 - . ID=CGI_10016647; scaffold714 WUBlastX DNA_TcMar-Tc1 392153 392302 54 + . . scaffold714 GLEAN mRNA 391465 391905 0.999675 - . ID=CGI_10016647; scaffold714 WUBlastX DNA_TcMar-Tc1 391465 391905 23 + . . scaffold714 GLEAN mRNA 391465 391803 0.999675 - . ID=CGI_10016647; scaffold714 WUBlastX DNA_TcMar-Tc1 391465 391803 37 + . . scaffold714 GLEAN mRNA 392063 392317 0.999675 - . ID=CGI_10016647; scaffold714 WUBlastX DNA_TcMar-Marin 392063 392317 35 + . . scaffold714 GLEAN mRNA 395416 396125 0.999675 - . ID=CGI_10016647; scaffold714 TRF Tandem_Repeat 395416 396125 1026 + . . scaffold714 GLEAN mRNA 395407 396280 0.999675 - . ID=CGI_10016647; scaffold714 TRF Tandem_Repeat 395407 396280 1131 + . . scaffold714 GLEAN mRNA 396124 396280 0.999675 - . ID=CGI_10016647; scaffold714 TRF Tandem_Repeat 396124 396280 206 + . . scaffold714 GLEAN mRNA 399006 399200 0.999675 - . ID=CGI_10016647; scaffold714 WUBlastX DNA_TcMar-Tc1 399006 399200 60 + . . scaffold714 GLEAN mRNA 398937 399152 0.999675 - . ID=CGI_10016647; scaffold714 WUBlastX DNA_TcMar-Tc1 398937 399152 51 + . . scaffold714 GLEAN mRNA 430603 430701 0.999676 + . ID=CGI_10016648; scaffold714 TRF Tandem_Repeat 430603 430701 108 + . . scaffold714 GLEAN mRNA 432241 432335 0.999676 + . ID=CGI_10016648; scaffold714 TRF Tandem_Repeat 432241 432335 84 + . . scaffold714 GLEAN mRNA 433662 433806 0.999676 + . ID=CGI_10016648; scaffold714 TRF Tandem_Repeat 433662 433806 239 + . . scaffold714 GLEAN mRNA 436824 437551 0.999676 + . ID=CGI_10016648; scaffold714 TRF Tandem_Repeat 436824 437551 180 + . . scaffold1834 GLEAN mRNA 42165 42383 0.846288 + . ID=CGI_10016651; scaffold1834 WUBlastX LINE_L1 42165 42383 61 + . . scaffold1834 GLEAN mRNA 42120 42260 0.846288 + . ID=CGI_10016651; scaffold1834 WUBlastX LINE_L1-Tx1 42120 42260 77 + . . scaffold1834 GLEAN mRNA 42704 42802 0.846288 + . ID=CGI_10016651; scaffold1834 WUBlastX LINE_L1-Tx1 42704 42802 24 + . . scaffold1834 GLEAN mRNA 59063 60803 0.846288 + . ID=CGI_10016651; scaffold1834 TRF Tandem_Repeat 59063 60803 1921 + . . scaffold1834 GLEAN mRNA 62849 63579 0.846288 + . ID=CGI_10016651; scaffold1834 TRF Tandem_Repeat 62849 63579 782 + . . scaffold1834 GLEAN mRNA 62874 63580 0.846288 + . ID=CGI_10016651; scaffold1834 TRF Tandem_Repeat 62874 63580 958 + . . scaffold1834 GLEAN mRNA 62874 63580 0.846288 + . ID=CGI_10016651; scaffold1834 TRF Tandem_Repeat 62874 63580 961 + . . scaffold1834 GLEAN mRNA 137888 137930 0.650883 + . ID=CGI_10016656; scaffold1834 TRF Tandem_Repeat 137888 137930 86 + . . scaffold1834 GLEAN mRNA 186660 186691 0.812486 - . ID=CGI_10016657; scaffold1834 TRF Tandem_Repeat 186660 186691 64 + . . scaffold1834 GLEAN mRNA 190784 191104 0.374762 + . ID=CGI_10016658; scaffold1834 WUBlastX DNA_MuDR 190784 191104 45 + . . scaffold1834 GLEAN mRNA 190370 191512 0.374762 + . ID=CGI_10016658; scaffold1834 WUBlastX DNA_MuDR 190370 191512 30 + . . scaffold1834 GLEAN mRNA 224542 224582 0.478542 + . ID=CGI_10016660; scaffold1834 TRF Tandem_Repeat 224542 224582 82 + . . scaffold1834 GLEAN mRNA 311020 311134 1 + . ID=CGI_10016667; scaffold1834 TRF Tandem_Repeat 311020 311134 135 + . . scaffold1834 GLEAN mRNA 311948 312110 1 + . ID=CGI_10016667; scaffold1834 TRF Tandem_Repeat 311948 312110 150 + . . scaffold1834 GLEAN mRNA 316041 316093 0.99534 + . ID=CGI_10016668; scaffold1834 TRF Tandem_Repeat 316041 316093 106 + . . scaffold1834 GLEAN mRNA 328685 328734 0.971681 - . ID=CGI_10016670; scaffold1834 TRF Tandem_Repeat 328685 328734 100 + . . scaffold1834 GLEAN mRNA 338970 339007 0.985574 + . ID=CGI_10016672; scaffold1834 TRF Tandem_Repeat 338970 339007 67 + . . scaffold1834 GLEAN mRNA 345797 345835 0.985574 + . ID=CGI_10016672; scaffold1834 TRF Tandem_Repeat 345797 345835 62 + . . scaffold1863 GLEAN mRNA 30153 30677 0.999642 - . ID=CGI_10016677; scaffold1863 WUBlastX LTR_Gypsy 30153 30677 25 - . . scaffold1863 GLEAN mRNA 71033 71149 0.332642 - . ID=CGI_10016679; scaffold1863 WUBlastX DNA_TcMar-Marin 71033 71149 46 + . . scaffold1863 GLEAN mRNA 84807 84843 0.87294 - . ID=CGI_10016682; scaffold1863 TRF Tandem_Repeat 84807 84843 74 + . . scaffold1863 GLEAN mRNA 100815 100910 0.970544 + . ID=CGI_10016684; scaffold1863 TRF Tandem_Repeat 100815 100910 90 + . . scaffold1863 GLEAN mRNA 109678 109894 0.970544 + . ID=CGI_10016684; scaffold1863 TRF Tandem_Repeat 109678 109894 344 + . . scaffold1863 GLEAN mRNA 114054 114088 0.970544 + . ID=CGI_10016684; scaffold1863 TRF Tandem_Repeat 114054 114088 54 + . . scaffold1863 GLEAN mRNA 121214 121252 0.970544 + . ID=CGI_10016684; scaffold1863 TRF Tandem_Repeat 121214 121252 78 + . . scaffold1863 GLEAN mRNA 258930 260093 0.240564 - . ID=CGI_10016692; scaffold1863 WUBlastX DNA_hAT-hATw 258930 260093 113 + . . scaffold1863 GLEAN mRNA 259152 260114 0.240564 - . ID=CGI_10016692; scaffold1863 WUBlastX DNA_hAT-hATw 259152 260114 127 + . . scaffold1863 GLEAN mRNA 258705 259100 0.240564 - . ID=CGI_10016692; scaffold1863 WUBlastX DNA_hAT-hATw 258705 259100 112 + . . scaffold1863 GLEAN mRNA 295026 295067 0.398552 - . ID=CGI_10016693; scaffold1863 TRF Tandem_Repeat 295026 295067 75 + . . scaffold1863 GLEAN mRNA 310583 310953 0.398552 - . ID=CGI_10016693; scaffold1863 TRF Tandem_Repeat 310583 310953 412 + . . scaffold1863 GLEAN mRNA 308872 309369 0.398552 - . ID=CGI_10016693; scaffold1863 WUBlastX LINE_RTE-X 308872 309369 40 + . . scaffold1863 GLEAN mRNA 309022 309237 0.398552 - . ID=CGI_10016693; scaffold1863 WUBlastX LINE_RTE-X 309022 309237 105 + . . scaffold1863 GLEAN mRNA 308920 309339 0.398552 - . ID=CGI_10016693; scaffold1863 WUBlastX LINE_RTE-X 308920 309339 88 + . . scaffold1863 GLEAN mRNA 325171 325425 0.452482 - . ID=CGI_10016694; scaffold1863 TRF Tandem_Repeat 325171 325425 348 + . . scaffold1863 GLEAN mRNA 325170 325560 0.452482 - . ID=CGI_10016694; scaffold1863 TRF Tandem_Repeat 325170 325560 394 + . . scaffold1863 GLEAN mRNA 325472 325557 0.452482 - . ID=CGI_10016694; scaffold1863 TRF Tandem_Repeat 325472 325557 55 + . . scaffold1863 GLEAN mRNA 335314 335369 0.452482 - . ID=CGI_10016694; scaffold1863 TRF Tandem_Repeat 335314 335369 67 + . . scaffold1863 GLEAN mRNA 335322 335369 0.452482 - . ID=CGI_10016694; scaffold1863 TRF Tandem_Repeat 335322 335369 51 + . . scaffold1863 GLEAN mRNA 349155 349241 1 - . ID=CGI_10016695; scaffold1863 TRF Tandem_Repeat 349155 349241 95 + . . scaffold1863 GLEAN mRNA 349472 349639 1 - . ID=CGI_10016695; scaffold1863 TRF Tandem_Repeat 349472 349639 151 + . . scaffold1863 GLEAN mRNA 362416 362449 1 - . ID=CGI_10016695; scaffold1863 TRF Tandem_Repeat 362416 362449 52 + . . scaffold1863 GLEAN mRNA 372186 372270 0.892726 + . ID=CGI_10016696; scaffold1863 TRF Tandem_Repeat 372186 372270 80 + . . scaffold1863 GLEAN mRNA 372186 372259 0.892726 + . ID=CGI_10016696; scaffold1863 TRF Tandem_Repeat 372186 372259 85 + . . scaffold1863 GLEAN mRNA 372212 372258 0.892726 + . ID=CGI_10016696; scaffold1863 TRF Tandem_Repeat 372212 372258 94 + . . scaffold1863 GLEAN mRNA 372479 373117 0.892726 + . ID=CGI_10016696; scaffold1863 WUBlastX DNA_Harbinger 372479 373117 91 + . . scaffold1863 GLEAN mRNA 372276 372554 0.892726 + . ID=CGI_10016696; scaffold1863 WUBlastX DNA_Harbinger 372276 372554 40 + . . scaffold1863 GLEAN mRNA 372536 373066 0.892726 + . ID=CGI_10016696; scaffold1863 WUBlastX DNA_Harbinger 372536 373066 239 + . . scaffold1863 GLEAN mRNA 378938 378985 0.892726 + . ID=CGI_10016696; scaffold1863 TRF Tandem_Repeat 378938 378985 80 + . . scaffold1863 GLEAN mRNA 402538 402743 0.997737 - . ID=CGI_10016698; scaffold1863 TRF Tandem_Repeat 402538 402743 138 + . . scaffold1863 GLEAN mRNA 402509 402743 0.997737 - . ID=CGI_10016698; scaffold1863 TRF Tandem_Repeat 402509 402743 308 + . . scaffold1863 GLEAN mRNA 409039 409085 0.997737 - . ID=CGI_10016698; scaffold1863 TRF Tandem_Repeat 409039 409085 67 + . . scaffold1863 GLEAN mRNA 409400 409434 0.997737 - . ID=CGI_10016698; scaffold1863 TRF Tandem_Repeat 409400 409434 70 + . . scaffold1863 GLEAN mRNA 415964 417071 0.997737 - . ID=CGI_10016698; scaffold1863 TRF Tandem_Repeat 415964 417071 1062 + . . scaffold1863 GLEAN mRNA 423856 424073 0.997737 - . ID=CGI_10016698; scaffold1863 TRF Tandem_Repeat 423856 424073 181 + . . scaffold1863 GLEAN mRNA 423858 424074 0.997737 - . ID=CGI_10016698; scaffold1863 TRF Tandem_Repeat 423858 424074 265 + . . scaffold1863 GLEAN mRNA 423856 424117 0.997737 - . ID=CGI_10016698; scaffold1863 TRF Tandem_Repeat 423856 424117 115 + . . scaffold1863 GLEAN mRNA 424556 424928 0.997737 - . ID=CGI_10016698; scaffold1863 TRF Tandem_Repeat 424556 424928 255 + . . scaffold1863 GLEAN mRNA 424556 424883 0.997737 - . ID=CGI_10016698; scaffold1863 TRF Tandem_Repeat 424556 424883 299 + . . scaffold1863 GLEAN mRNA 424603 424928 0.997737 - . ID=CGI_10016698; scaffold1863 TRF Tandem_Repeat 424603 424928 263 + . . scaffold1863 GLEAN mRNA 425122 425152 0.997737 - . ID=CGI_10016698; scaffold1863 TRF Tandem_Repeat 425122 425152 62 + . . scaffold1863 GLEAN mRNA 456559 456652 0.998789 + . ID=CGI_10016701; scaffold1863 TRF Tandem_Repeat 456559 456652 102 + . . scaffold1863 GLEAN mRNA 456670 456739 0.998789 + . ID=CGI_10016701; scaffold1863 TRF Tandem_Repeat 456670 456739 54 + . . scaffold933 GLEAN mRNA 43018 43074 0.744668 - . ID=CGI_10016706; scaffold933 TRF Tandem_Repeat 43018 43074 114 + . . scaffold933 GLEAN mRNA 50602 50996 0.744668 - . ID=CGI_10016706; scaffold933 TRF Tandem_Repeat 50602 50996 634 + . . scaffold933 GLEAN mRNA 51962 52093 0.744668 - . ID=CGI_10016706; scaffold933 TRF Tandem_Repeat 51962 52093 215 + . . scaffold933 GLEAN mRNA 58238 58584 0.744668 - . ID=CGI_10016706; scaffold933 TRF Tandem_Repeat 58238 58584 342 + . . scaffold933 GLEAN mRNA 49002 49236 0.744668 - . ID=CGI_10016706; scaffold933 TRF Tandem_Repeat 49002 49236 337 + . . scaffold933 GLEAN mRNA 69134 69164 0.999676 + . ID=CGI_10016707; scaffold933 TRF Tandem_Repeat 69134 69164 62 + . . scaffold933 GLEAN mRNA 70764 70936 0.999676 + . ID=CGI_10016707; scaffold933 TRF Tandem_Repeat 70764 70936 127 + . . scaffold933 GLEAN mRNA 101922 102251 0.999993 - . ID=CGI_10016709; scaffold933 TRF Tandem_Repeat 101922 102251 464 + . . scaffold933 GLEAN mRNA 112465 113401 0.758882 - . ID=CGI_10016711; scaffold933 TRF Tandem_Repeat 112465 113401 1349 + . . scaffold933 GLEAN mRNA 113595 113710 0.758882 - . ID=CGI_10016711; scaffold933 TRF Tandem_Repeat 113595 113710 216 + . . scaffold933 GLEAN mRNA 117272 117478 0.758882 - . ID=CGI_10016711; scaffold933 TRF Tandem_Repeat 117272 117478 231 + . . scaffold933 GLEAN mRNA 173228 173259 0.805967 - . ID=CGI_10016713; scaffold933 TRF Tandem_Repeat 173228 173259 64 + . . scaffold933 GLEAN mRNA 282141 282442 0.83675 - . ID=CGI_10016718; scaffold933 TRF Tandem_Repeat 282141 282442 278 + . . scaffold933 GLEAN mRNA 282568 282600 0.83675 - . ID=CGI_10016718; scaffold933 TRF Tandem_Repeat 282568 282600 57 + . . scaffold933 GLEAN mRNA 284687 284730 0.83675 - . ID=CGI_10016718; scaffold933 TRF Tandem_Repeat 284687 284730 70 + . . scaffold933 GLEAN mRNA 285812 286126 0.83675 - . ID=CGI_10016718; scaffold933 TRF Tandem_Repeat 285812 286126 448 + . . scaffold933 GLEAN mRNA 285847 285982 0.83675 - . ID=CGI_10016718; scaffold933 TRF Tandem_Repeat 285847 285982 60 + . . scaffold933 GLEAN mRNA 285812 286126 0.83675 - . ID=CGI_10016718; scaffold933 TRF Tandem_Repeat 285812 286126 444 + . . scaffold933 GLEAN mRNA 287166 287286 0.83675 - . ID=CGI_10016718; scaffold933 TRF Tandem_Repeat 287166 287286 149 + . . scaffold933 GLEAN mRNA 285812 286126 1 + . ID=CGI_10016719; scaffold933 TRF Tandem_Repeat 285812 286126 448 + . . scaffold933 GLEAN mRNA 285847 285982 1 + . ID=CGI_10016719; scaffold933 TRF Tandem_Repeat 285847 285982 60 + . . scaffold933 GLEAN mRNA 285812 286126 1 + . ID=CGI_10016719; scaffold933 TRF Tandem_Repeat 285812 286126 444 + . . scaffold933 GLEAN mRNA 287166 287286 1 + . ID=CGI_10016719; scaffold933 TRF Tandem_Repeat 287166 287286 149 + . . scaffold933 GLEAN mRNA 317542 317613 1 + . ID=CGI_10016721; scaffold933 TRF Tandem_Repeat 317542 317613 99 + . . scaffold933 GLEAN mRNA 318784 319017 1 + . ID=CGI_10016721; scaffold933 TRF Tandem_Repeat 318784 319017 152 + . . scaffold933 GLEAN mRNA 324128 324168 0.990126 + . ID=CGI_10016722; scaffold933 TRF Tandem_Repeat 324128 324168 73 + . . scaffold933 GLEAN mRNA 324988 325016 0.990126 + . ID=CGI_10016722; scaffold933 TRF Tandem_Repeat 324988 325016 58 + . . scaffold933 GLEAN mRNA 320919 321002 0.990126 + . ID=CGI_10016722; scaffold933 WUBlastX LINE_L2 320907 321002 24 + . . scaffold933 GLEAN mRNA 322242 323891 0.990126 + . ID=CGI_10016722; scaffold933 WUBlastX LINE_RTE-X 322242 323891 210 + . . scaffold933 GLEAN mRNA 321701 322237 0.990126 + . ID=CGI_10016722; scaffold933 WUBlastX LINE_RTE-X 321701 322237 111 + . . scaffold933 GLEAN mRNA 322257 323393 0.990126 + . ID=CGI_10016722; scaffold933 WUBlastX LINE_RTE-X 322257 323393 239 + . . scaffold933 GLEAN mRNA 321608 322141 0.990126 + . ID=CGI_10016722; scaffold933 WUBlastX LINE_L1 321608 322141 78 + . . scaffold933 GLEAN mRNA 321382 321417 0.990126 + . ID=CGI_10016722; scaffold933 WUBlastX LINE_RTE-X 321382 321417 23 + . . scaffold933 GLEAN mRNA 321833 322237 0.990126 + . ID=CGI_10016722; scaffold933 WUBlastX LINE_L1 321833 322237 117 + . . scaffold933 GLEAN mRNA 328005 328124 0.990126 + . ID=CGI_10016722; scaffold933 TRF Tandem_Repeat 328005 328124 82 + . . scaffold933 GLEAN mRNA 342062 342268 0.99375 + . ID=CGI_10016723; scaffold933 TRF Tandem_Repeat 342062 342268 166 + . . scaffold933 GLEAN mRNA 343207 343244 0.99375 + . ID=CGI_10016723; scaffold933 TRF Tandem_Repeat 343207 343244 76 + . . scaffold933 GLEAN mRNA 360659 360905 0.998821 + . ID=CGI_10016724; scaffold933 TRF Tandem_Repeat 360659 360905 190 + . . scaffold933 GLEAN mRNA 360659 360905 0.998821 + . ID=CGI_10016724; scaffold933 TRF Tandem_Repeat 360659 360905 221 + . . scaffold933 GLEAN mRNA 369870 369949 1 + . ID=CGI_10016725; scaffold933 TRF Tandem_Repeat 369870 369949 160 + . . scaffold933 GLEAN mRNA 432407 432502 1 + . ID=CGI_10016726; scaffold933 WUBlastX DNA_Zator 432344 432502 101 + . . scaffold933 GLEAN mRNA 432603 433148 1 + . ID=CGI_10016726; scaffold933 WUBlastX DNA_Zator 432603 433148 145 + . . scaffold933 GLEAN mRNA 446954 447075 0.391135 + . ID=CGI_10016727; scaffold933 TRF Tandem_Repeat 446954 447075 105 + . . scaffold933 GLEAN mRNA 446933 447095 0.391135 + . ID=CGI_10016727; scaffold933 TRF Tandem_Repeat 446933 447095 91 + . . scaffold933 GLEAN mRNA 442785 442904 0.391135 + . ID=CGI_10016727; scaffold933 WUBlastX DNA_En-Spm 442785 442904 119 - . . scaffold933 GLEAN mRNA 445226 445285 0.391135 + . ID=CGI_10016727; scaffold933 WUBlastX DNA_Harbinger 445226 445285 38 - . . scaffold933 GLEAN mRNA 445285 445491 0.391135 + . ID=CGI_10016727; scaffold933 WUBlastX DNA_Harbinger 445285 445491 97 - . . scaffold933 GLEAN mRNA 442961 443089 0.391135 + . ID=CGI_10016727; scaffold933 WUBlastX DNA_En-Spm 442961 443089 45 - . . scaffold933 GLEAN mRNA 442066 442785 0.391135 + . ID=CGI_10016727; scaffold933 WUBlastX DNA_En-Spm 442066 442785 122 - . . scaffold833 GLEAN mRNA 132271 132448 0.999255 - . ID=CGI_10016733; scaffold833 TRF Tandem_Repeat 132271 132448 122 + . . scaffold833 GLEAN mRNA 132238 132457 0.999255 - . ID=CGI_10016733; scaffold833 TRF Tandem_Repeat 132238 132457 114 + . . scaffold833 GLEAN mRNA 130555 132061 0.999255 - . ID=CGI_10016733; scaffold833 TRF Tandem_Repeat 130555 132061 1749 + . . scaffold833 GLEAN mRNA 130555 132061 0.999255 - . ID=CGI_10016733; scaffold833 TRF Tandem_Repeat 130555 132061 1649 + . . scaffold833 GLEAN mRNA 196473 196502 0.883954 + . ID=CGI_10016735; scaffold833 TRF Tandem_Repeat 196473 196502 60 + . . scaffold833 GLEAN mRNA 209986 210128 0.790711 - . ID=CGI_10016736; scaffold833 TRF Tandem_Repeat 209986 210128 116 + . . scaffold833 GLEAN mRNA 210006 210098 0.790711 - . ID=CGI_10016736; scaffold833 TRF Tandem_Repeat 210006 210098 68 + . . scaffold833 GLEAN mRNA 218942 219042 0.790711 - . ID=CGI_10016736; scaffold833 TRF Tandem_Repeat 218942 219042 93 + . . scaffold833 GLEAN mRNA 224821 224861 0.790711 - . ID=CGI_10016736; scaffold833 TRF Tandem_Repeat 224821 224861 82 + . . scaffold833 GLEAN mRNA 225067 225137 0.790711 - . ID=CGI_10016736; scaffold833 TRF Tandem_Repeat 225067 225137 142 + . . scaffold833 GLEAN mRNA 227046 227267 0.790711 - . ID=CGI_10016736; scaffold833 TRF Tandem_Repeat 227046 227267 408 + . . scaffold833 GLEAN mRNA 240516 240656 0.96892 + . ID=CGI_10016737; scaffold833 WUBlastX LINE_RTE-BovB 240384 240656 89 + . . scaffold833 GLEAN mRNA 240516 240758 0.96892 + . ID=CGI_10016737; scaffold833 WUBlastX LINE_RTE-BovB 240354 240758 78 + . . scaffold833 GLEAN mRNA 240516 240821 0.96892 + . ID=CGI_10016737; scaffold833 WUBlastX LINE_RTE-BovB 240375 240827 61 + . . scaffold833 GLEAN mRNA 296906 297171 1 + . ID=CGI_10016742; scaffold833 TRF Tandem_Repeat 296906 297171 174 + . . scaffold833 GLEAN mRNA 299820 299860 1 + . ID=CGI_10016742; scaffold833 TRF Tandem_Repeat 299820 299860 82 + . . scaffold833 GLEAN mRNA 305741 305778 1 + . ID=CGI_10016743; scaffold833 TRF Tandem_Repeat 305741 305778 76 + . . scaffold833 GLEAN mRNA 351716 351888 0.191045 + . ID=CGI_10016744; scaffold833 TRF Tandem_Repeat 351716 351888 301 + . . scaffold833 GLEAN mRNA 359104 360168 0.191045 + . ID=CGI_10016744; scaffold833 TRF Tandem_Repeat 359104 360168 170 + . . scaffold833 GLEAN mRNA 359104 359613 0.191045 + . ID=CGI_10016744; scaffold833 TRF Tandem_Repeat 359104 359613 207 + . . scaffold833 GLEAN mRNA 359360 359607 0.191045 + . ID=CGI_10016744; scaffold833 TRF Tandem_Repeat 359360 359607 128 + . . scaffold833 GLEAN mRNA 359118 360202 0.191045 + . ID=CGI_10016744; scaffold833 TRF Tandem_Repeat 359118 360202 304 + . . scaffold833 GLEAN mRNA 359620 359678 0.191045 + . ID=CGI_10016744; scaffold833 TRF Tandem_Repeat 359620 359678 68 + . . scaffold833 GLEAN mRNA 360054 360166 0.191045 + . ID=CGI_10016744; scaffold833 TRF Tandem_Repeat 360054 360166 65 + . . scaffold833 GLEAN mRNA 360112 360185 0.191045 + . ID=CGI_10016744; scaffold833 TRF Tandem_Repeat 360112 360185 89 + . . scaffold833 GLEAN mRNA 359850 360192 0.191045 + . ID=CGI_10016744; scaffold833 TRF Tandem_Repeat 359850 360192 235 + . . scaffold833 GLEAN mRNA 358665 358865 0.191045 + . ID=CGI_10016744; scaffold833 WUBlastX LINE_L1-Tx1 358665 358865 83 - . . scaffold833 GLEAN mRNA 362155 362204 0.191045 + . ID=CGI_10016744; scaffold833 TRF Tandem_Repeat 362155 362204 100 + . . scaffold833 GLEAN mRNA 366222 366251 0.191045 + . ID=CGI_10016744; scaffold833 TRF Tandem_Repeat 366222 366251 51 + . . scaffold833 GLEAN mRNA 372017 372056 0.191045 + . ID=CGI_10016744; scaffold833 TRF Tandem_Repeat 372017 372056 62 + . . scaffold833 GLEAN mRNA 368537 368794 0.191045 + . ID=CGI_10016744; scaffold833 WUBlastX LTR_Gypsy 368537 368794 24 - . . scaffold833 GLEAN mRNA 368618 370177 0.191045 + . ID=CGI_10016744; scaffold833 WUBlastX LTR_Gypsy 368618 370177 1023 - . . scaffold833 GLEAN mRNA 369149 370366 0.191045 + . ID=CGI_10016744; scaffold833 WUBlastX LTR_ERV1 369149 370366 189 - . . scaffold833 GLEAN mRNA 379607 379819 0.191045 + . ID=CGI_10016744; scaffold833 WUBlastX LINE_Penelope 379607 379819 69 - . . scaffold833 GLEAN mRNA 379595 379774 0.191045 + . ID=CGI_10016744; scaffold833 WUBlastX LINE_Penelope 379595 379774 101 - . . scaffold833 GLEAN mRNA 469283 469387 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX DNA_Academ 469283 469387 24 - . . scaffold833 GLEAN mRNA 467279 467980 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX LINE_L1-Tx1 467279 467980 62 - . . scaffold833 GLEAN mRNA 469368 469468 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX DNA_Academ 469368 469910 174 - . . scaffold833 GLEAN mRNA 465344 465853 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX LINE_L1-Tx1 465344 465853 45 - . . scaffold833 GLEAN mRNA 465889 467277 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX LINE_L1-Tx1 465889 467277 592 - . . scaffold833 GLEAN mRNA 467279 467689 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX LINE_L1-Tx1 467279 467689 412 - . . scaffold833 GLEAN mRNA 467906 468598 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX LINE_L1-Tx1 467906 468598 350 - . . scaffold833 GLEAN mRNA 465422 465823 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX LINE_L1-Tx1 465422 465823 82 - . . scaffold833 GLEAN mRNA 467315 467770 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX LINE_L1 467315 467770 118 - . . scaffold833 GLEAN mRNA 463710 463722 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX DNA_Academ 463468 463722 77 - . . scaffold833 GLEAN mRNA 463773 464843 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX DNA_Academ 463773 464843 264 - . . scaffold833 GLEAN mRNA 465796 465885 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX LINE_R2 465796 465885 22 - . . scaffold44064 GLEAN mRNA 19821 19848 0.999675 - . ID=CGI_10016747; scaffold44064 TRF Tandem_Repeat 19821 19848 56 + . . scaffold44064 GLEAN mRNA 44235 44268 0.999674 - . ID=CGI_10016748; scaffold44064 TRF Tandem_Repeat 44235 44268 68 + . . scaffold44064 GLEAN mRNA 59379 59435 1 + . ID=CGI_10016750; scaffold44064 TRF Tandem_Repeat 59379 59435 71 + . . scaffold44064 GLEAN mRNA 59379 59435 1 + . ID=CGI_10016750; scaffold44064 TRF Tandem_Repeat 59379 59435 89 + . . scaffold44064 GLEAN mRNA 82248 82911 0.641533 - . ID=CGI_10016753; scaffold44064 TRF Tandem_Repeat 82248 82911 1019 + . . scaffold44064 GLEAN mRNA 146815 146871 0.996552 - . ID=CGI_10016758; scaffold44064 TRF Tandem_Repeat 146815 146871 114 + . . scaffold44064 GLEAN mRNA 150909 150943 0.996552 - . ID=CGI_10016758; scaffold44064 TRF Tandem_Repeat 150909 150943 70 + . . scaffold44064 GLEAN mRNA 183333 183383 0.999209 + . ID=CGI_10016760; scaffold44064 TRF Tandem_Repeat 183333 183383 93 + . . scaffold44064 GLEAN mRNA 214863 215270 0.297034 - . ID=CGI_10016763; scaffold44064 WUBlastX LINE_CR1 214863 215270 73 + . . scaffold44064 GLEAN mRNA 215306 215734 0.297034 - . ID=CGI_10016763; scaffold44064 WUBlastX LINE_CR1 215306 215734 47 + . . scaffold44064 GLEAN mRNA 215321 215455 0.297034 - . ID=CGI_10016763; scaffold44064 WUBlastX LINE_CR1 215321 215455 51 + . . scaffold44064 GLEAN mRNA 214815 215351 0.297034 - . ID=CGI_10016763; scaffold44064 WUBlastX LINE_CR1 214815 215351 21 + . . scaffold44064 GLEAN mRNA 217494 217591 1 + . ID=CGI_10016764; scaffold44064 TRF Tandem_Repeat 217494 217591 72 + . . scaffold44064 GLEAN mRNA 242809 242842 0.590266 - . ID=CGI_10016765; scaffold44064 TRF Tandem_Repeat 242809 242842 68 + . . scaffold44064 GLEAN mRNA 266501 266547 0.999897 + . ID=CGI_10016766; scaffold44064 TRF Tandem_Repeat 266501 266547 94 + . . scaffold44064 GLEAN mRNA 270596 270705 0.999897 + . ID=CGI_10016766; scaffold44064 TRF Tandem_Repeat 270596 270705 123 + . . scaffold44064 GLEAN mRNA 277513 277554 0.991197 + . ID=CGI_10016767; scaffold44064 TRF Tandem_Repeat 277513 277554 84 + . . scaffold44064 GLEAN mRNA 279273 279471 0.991197 + . ID=CGI_10016767; scaffold44064 TRF Tandem_Repeat 279273 279471 213 + . . scaffold44064 GLEAN mRNA 349352 349394 0.861916 - . ID=CGI_10016775; scaffold44064 TRF Tandem_Repeat 349352 349394 86 + . . scaffold44064 GLEAN mRNA 349571 349620 0.861916 - . ID=CGI_10016775; scaffold44064 TRF Tandem_Repeat 349571 349620 77 + . . scaffold44064 GLEAN mRNA 387423 387454 0.861916 - . ID=CGI_10016776; scaffold44064 TRF Tandem_Repeat 387423 387454 64 + . . scaffold44064 GLEAN mRNA 388688 389955 0.861916 - . ID=CGI_10016776; scaffold44064 TRF Tandem_Repeat 388688 389955 1654 + . . scaffold44064 GLEAN mRNA 412034 413181 0.999666 - . ID=CGI_10016779; scaffold44064 TRF Tandem_Repeat 412034 413181 1400 + . . scaffold44064 GLEAN mRNA 414284 414340 0.999666 - . ID=CGI_10016779; scaffold44064 TRF Tandem_Repeat 414284 414340 114 + . . scaffold44064 GLEAN mRNA 429253 429446 0.986244 - . ID=CGI_10016781; scaffold44064 TRF Tandem_Repeat 429253 429446 109 + . . scaffold44064 GLEAN mRNA 442662 442697 0.738334 - . ID=CGI_10016783; scaffold44064 TRF Tandem_Repeat 442662 442697 65 + . . scaffold44064 GLEAN mRNA 455601 455636 0.557967 - . ID=CGI_10016785; scaffold44064 TRF Tandem_Repeat 455601 455636 63 + . . scaffold44064 GLEAN mRNA 459098 459256 0.557967 - . ID=CGI_10016785; scaffold44064 TRF Tandem_Repeat 459098 459256 112 + . . scaffold44064 GLEAN mRNA 459098 459256 0.989529 + . ID=CGI_10016786; scaffold44064 TRF Tandem_Repeat 459098 459256 112 + . . scaffold44064 GLEAN mRNA 461217 461269 0.989529 + . ID=CGI_10016786; scaffold44064 TRF Tandem_Repeat 461217 461269 97 + . . scaffold44064 GLEAN mRNA 462403 462447 0.989529 + . ID=CGI_10016786; scaffold44064 TRF Tandem_Repeat 462403 462447 83 + . . scaffold44064 GLEAN mRNA 472303 472351 0.989529 + . ID=CGI_10016786; scaffold44064 TRF Tandem_Repeat 472303 472351 53 + . . scaffold44064 GLEAN mRNA 472393 472525 0.989529 + . ID=CGI_10016786; scaffold44064 TRF Tandem_Repeat 472393 472525 86 + . . scaffold44064 GLEAN mRNA 472471 472551 0.989529 + . ID=CGI_10016786; scaffold44064 TRF Tandem_Repeat 472471 472551 63 + . . scaffold44064 GLEAN mRNA 461217 461269 0.642723 - . ID=CGI_10016787; scaffold44064 TRF Tandem_Repeat 461217 461269 97 + . . scaffold44064 GLEAN mRNA 462403 462447 0.642723 - . ID=CGI_10016787; scaffold44064 TRF Tandem_Repeat 462403 462447 83 + . . scaffold44064 GLEAN mRNA 472303 472351 0.642723 - . ID=CGI_10016787; scaffold44064 TRF Tandem_Repeat 472303 472351 53 + . . scaffold44064 GLEAN mRNA 472393 472525 0.642723 - . ID=CGI_10016787; scaffold44064 TRF Tandem_Repeat 472393 472525 86 + . . scaffold44064 GLEAN mRNA 472471 472551 0.642723 - . ID=CGI_10016787; scaffold44064 TRF Tandem_Repeat 472471 472551 63 + . . scaffold556 GLEAN mRNA 518 1060 0.999999 + . ID=CGI_10016788; scaffold556 WUBlastX LTR_Pao 2 1060 1028 + . . scaffold556 GLEAN mRNA 20863 20906 0.650997 - . ID=CGI_10016790; scaffold556 TRF Tandem_Repeat 20863 20906 72 + . . scaffold556 GLEAN mRNA 23282 23342 0.650997 - . ID=CGI_10016790; scaffold556 TRF Tandem_Repeat 23282 23342 65 + . . scaffold556 GLEAN mRNA 23282 23342 0.650997 - . ID=CGI_10016790; scaffold556 TRF Tandem_Repeat 23282 23342 74 + . . scaffold556 GLEAN mRNA 78254 78302 0.999976 - . ID=CGI_10016796; scaffold556 TRF Tandem_Repeat 78254 78302 98 + . . scaffold556 GLEAN mRNA 181986 182130 0.999676 + . ID=CGI_10016800; scaffold556 TRF Tandem_Repeat 181986 182130 193 + . . scaffold556 GLEAN mRNA 182558 182600 0.999676 + . ID=CGI_10016800; scaffold556 TRF Tandem_Repeat 182558 182600 68 + . . scaffold556 GLEAN mRNA 194506 194718 0.999351 - . ID=CGI_10016802; scaffold556 WUBlastX LINE_L1-Tx1 194506 194718 70 + . . scaffold556 GLEAN mRNA 194300 194449 0.999351 - . ID=CGI_10016802; scaffold556 WUBlastX LINE_L1 194300 194449 69 + . . scaffold556 GLEAN mRNA 194300 194506 0.999351 - . ID=CGI_10016802; scaffold556 WUBlastX LINE_L1-Tx1 194300 194506 49 + . . scaffold556 GLEAN mRNA 194261 194437 0.999351 - . ID=CGI_10016802; scaffold556 WUBlastX LINE_L1-Tx1 194261 194437 53 + . . scaffold556 GLEAN mRNA 222614 223414 0.44629 - . ID=CGI_10016803; scaffold556 TRF Tandem_Repeat 222614 223414 1350 + . . scaffold556 GLEAN mRNA 223428 223513 0.44629 - . ID=CGI_10016803; scaffold556 TRF Tandem_Repeat 223428 223513 118 + . . scaffold556 GLEAN mRNA 223428 223513 0.44629 - . ID=CGI_10016803; scaffold556 TRF Tandem_Repeat 223428 223513 145 + . . scaffold556 GLEAN mRNA 237379 237495 0.44629 - . ID=CGI_10016803; scaffold556 TRF Tandem_Repeat 237379 237495 137 + . . scaffold556 GLEAN mRNA 240679 241160 0.44629 - . ID=CGI_10016803; scaffold556 TRF Tandem_Repeat 240679 241160 784 + . . scaffold556 GLEAN mRNA 278229 278274 0.387115 - . ID=CGI_10016806; scaffold556 TRF Tandem_Repeat 278229 278274 51 + . . scaffold556 GLEAN mRNA 280204 280311 0.387115 - . ID=CGI_10016806; scaffold556 WUBlastX LINE_RTE-X 280204 280311 26 + . . scaffold556 GLEAN mRNA 329657 331922 0.387115 - . ID=CGI_10016806; scaffold556 TRF Tandem_Repeat 329657 331922 2263 + . . scaffold556 GLEAN mRNA 364102 370478 0.387115 - . ID=CGI_10016806; scaffold556 TRF Tandem_Repeat 364102 370478 12583 + . . scaffold556 GLEAN mRNA 371620 371650 0.387115 - . ID=CGI_10016806; scaffold556 TRF Tandem_Repeat 371620 371650 53 + . . scaffold556 GLEAN mRNA 387960 388016 0.212963 - . ID=CGI_10016808; scaffold556 WUBlastX LTR_Copia 387960 388016 23 - . . scaffold556 GLEAN mRNA 417324 417421 0.212963 - . ID=CGI_10016808; scaffold556 TRF Tandem_Repeat 417324 417421 137 + . . scaffold556 GLEAN mRNA 436671 437003 0.212963 - . ID=CGI_10016808; scaffold556 TRF Tandem_Repeat 436671 437003 277 + . . scaffold556 GLEAN mRNA 436671 437018 0.212963 - . ID=CGI_10016808; scaffold556 TRF Tandem_Repeat 436671 437018 402 + . . scaffold556 GLEAN mRNA 449656 449852 0.212963 - . ID=CGI_10016808; scaffold556 TRF Tandem_Repeat 449656 449852 313 + . . scaffold556 GLEAN mRNA 456822 456866 0.212963 - . ID=CGI_10016808; scaffold556 TRF Tandem_Repeat 456822 456866 65 + . . scaffold44 GLEAN mRNA 25462 25513 0.998812 + . ID=CGI_10016815; scaffold44 TRF Tandem_Repeat 25462 25513 104 + . . scaffold44 GLEAN mRNA 31512 31569 0.998812 + . ID=CGI_10016815; scaffold44 TRF Tandem_Repeat 31512 31569 82 + . . scaffold44 GLEAN mRNA 90192 90296 0.779083 + . ID=CGI_10016819; scaffold44 WUBlastX DNA_Zator 90192 90296 24 + . . scaffold44 GLEAN mRNA 102537 102703 0.388764 - . ID=CGI_10016820; scaffold44 TRF Tandem_Repeat 102537 102703 244 + . . scaffold44 GLEAN mRNA 107638 107676 0.388764 - . ID=CGI_10016820; scaffold44 TRF Tandem_Repeat 107638 107676 78 + . . scaffold44 GLEAN mRNA 240715 240785 0.999061 - . ID=CGI_10016826; scaffold44 TRF Tandem_Repeat 240715 240785 126 + . . scaffold44 GLEAN mRNA 240839 240894 0.999061 - . ID=CGI_10016826; scaffold44 TRF Tandem_Repeat 240839 240894 112 + . . scaffold44 GLEAN mRNA 244181 244684 0.999499 + . ID=CGI_10016827; scaffold44 WUBlastX DNA_Kolobok-IS4 244181 244684 86 + . . scaffold44 GLEAN mRNA 263382 264515 0.999466 - . ID=CGI_10016829; scaffold44 TRF Tandem_Repeat 263382 264515 1621 + . . scaffold44 GLEAN mRNA 275679 275737 0.999834 - . ID=CGI_10016830; scaffold44 TRF Tandem_Repeat 275679 275737 118 + . . scaffold44 GLEAN mRNA 312619 312670 0.998758 - . ID=CGI_10016834; scaffold44 TRF Tandem_Repeat 312619 312670 104 + . . scaffold44 GLEAN mRNA 313201 313250 0.998758 - . ID=CGI_10016834; scaffold44 TRF Tandem_Repeat 313201 313250 100 + . . scaffold44 GLEAN mRNA 313623 313670 0.998758 - . ID=CGI_10016834; scaffold44 TRF Tandem_Repeat 313623 313670 69 + . . scaffold44 GLEAN mRNA 313622 313676 0.998758 - . ID=CGI_10016834; scaffold44 TRF Tandem_Repeat 313622 313676 65 + . . scaffold44 GLEAN mRNA 349982 350734 0.748127 - . ID=CGI_10016836; scaffold44 WUBlastX DNA_IS4EU 349982 350734 85 - . . scaffold44 GLEAN mRNA 349361 350560 0.748127 - . ID=CGI_10016836; scaffold44 WUBlastX DNA_IS4EU 349361 350560 109 - . . scaffold44 GLEAN mRNA 349346 350083 0.748127 - . ID=CGI_10016836; scaffold44 WUBlastX DNA_IS4EU 349346 350083 139 - . . scaffold44 GLEAN mRNA 349361 349987 0.748127 - . ID=CGI_10016836; scaffold44 WUBlastX DNA_IS4EU 349361 349987 226 - . . scaffold44 GLEAN mRNA 372515 374381 1 - . ID=CGI_10016838; scaffold44 TRF Tandem_Repeat 372515 374381 2408 + . . scaffold44 GLEAN mRNA 369918 370700 1 - . ID=CGI_10016838; scaffold44 WUBlastX LINE_CR1 369918 370700 26 - . . scaffold44 GLEAN mRNA 391691 391729 0.863441 - . ID=CGI_10016839; scaffold44 TRF Tandem_Repeat 391691 391729 60 + . . scaffold44 GLEAN mRNA 393174 393209 0.863441 - . ID=CGI_10016839; scaffold44 TRF Tandem_Repeat 393174 393209 72 + . . scaffold44 GLEAN mRNA 389221 389349 0.863441 - . ID=CGI_10016839; scaffold44 WUBlastX LINE_RTE-X 389221 389349 31 + . . scaffold44 GLEAN mRNA 388386 388610 0.863441 - . ID=CGI_10016839; scaffold44 WUBlastX LINE_RTE-X 388386 388610 52 + . . scaffold44 GLEAN mRNA 388386 388574 0.863441 - . ID=CGI_10016839; scaffold44 WUBlastX LINE_RTE-X 388386 388574 68 + . . scaffold44 GLEAN mRNA 430245 430438 0.490034 + . ID=CGI_10016840; scaffold44 TRF Tandem_Repeat 430245 430438 230 + . . scaffold44 GLEAN mRNA 431870 432057 0.490034 + . ID=CGI_10016840; scaffold44 TRF Tandem_Repeat 431870 432057 153 + . . scaffold44 GLEAN mRNA 454269 454522 0.989884 + . ID=CGI_10016842; scaffold44 TRF Tandem_Repeat 454269 454522 481 + . . scaffold44 GLEAN mRNA 464010 464069 0.989884 + . ID=CGI_10016842; scaffold44 TRF Tandem_Repeat 464010 464069 52 + . . scaffold44 GLEAN mRNA 464010 464069 0.989884 + . ID=CGI_10016842; scaffold44 TRF Tandem_Repeat 464010 464069 65 + . . scaffold44 GLEAN mRNA 465388 465564 0.989884 + . ID=CGI_10016842; scaffold44 TRF Tandem_Repeat 465388 465564 282 + . . scaffold44 GLEAN mRNA 465388 465564 0.989884 + . ID=CGI_10016842; scaffold44 TRF Tandem_Repeat 465388 465564 282 + . . scaffold44 GLEAN mRNA 470811 470873 0.989884 + . ID=CGI_10016842; scaffold44 TRF Tandem_Repeat 470811 470873 126 + . . scaffold44 GLEAN mRNA 459615 459920 0.989884 + . ID=CGI_10016842; scaffold44 WUBlastX DNA_Maverick 459615 459920 67 - . . scaffold44 GLEAN mRNA 477458 477501 0.989884 + . ID=CGI_10016842; scaffold44 TRF Tandem_Repeat 477458 477501 88 + . . scaffold1579 GLEAN mRNA 6700 6751 0.5 + . ID=CGI_10016843; scaffold1579 TRF Tandem_Repeat 6700 6751 79 + . . scaffold1579 GLEAN mRNA 9998 10023 0.5 + . ID=CGI_10016843; scaffold1579 TRF Tandem_Repeat 9998 10023 52 + . . scaffold1579 GLEAN mRNA 10895 10981 0.5 + . ID=CGI_10016843; scaffold1579 TRF Tandem_Repeat 10895 10981 95 + . . scaffold1579 GLEAN mRNA 6700 6751 0.998191 - . ID=CGI_10016845; scaffold1579 TRF Tandem_Repeat 6700 6751 79 + . . scaffold1579 GLEAN mRNA 9998 10023 0.998191 - . ID=CGI_10016845; scaffold1579 TRF Tandem_Repeat 9998 10023 52 + . . scaffold1579 GLEAN mRNA 38215 38632 0.963272 + . ID=CGI_10016847; scaffold1579 TRF Tandem_Repeat 38215 38632 483 + . . scaffold1579 GLEAN mRNA 147269 147372 1 + . ID=CGI_10016857; scaffold1579 TRF Tandem_Repeat 147269 147372 181 + . . scaffold1579 GLEAN mRNA 210035 210076 0.999913 - . ID=CGI_10016862; scaffold1579 TRF Tandem_Repeat 210035 210076 68 + . . scaffold1579 GLEAN mRNA 240320 240610 0.999212 + . ID=CGI_10016864; scaffold1579 TRF Tandem_Repeat 240320 240610 354 + . . scaffold1579 GLEAN mRNA 240991 241118 0.999212 + . ID=CGI_10016864; scaffold1579 TRF Tandem_Repeat 240991 241118 188 + . . scaffold1579 GLEAN mRNA 240993 241150 0.999212 + . ID=CGI_10016864; scaffold1579 TRF Tandem_Repeat 240993 241150 176 + . . scaffold1579 GLEAN mRNA 241188 241292 0.999212 + . ID=CGI_10016864; scaffold1579 TRF Tandem_Repeat 241188 241292 147 + . . scaffold1579 GLEAN mRNA 243730 244856 0.999212 + . ID=CGI_10016864; scaffold1579 TRF Tandem_Repeat 243730 244856 1746 + . . scaffold1579 GLEAN mRNA 317939 318165 1 + . ID=CGI_10016868; scaffold1579 WUBlastX LINE_CR1 317939 318343 58 - . . scaffold1579 GLEAN mRNA 325090 325425 0.999956 + . ID=CGI_10016869; scaffold1579 WUBlastX LINE_RTE-X 325090 325425 63 + . . scaffold1579 GLEAN mRNA 326463 327233 0.999956 + . ID=CGI_10016869; scaffold1579 WUBlastX LINE_RTE-X 326463 327233 180 + . . scaffold1579 GLEAN mRNA 324997 325464 0.999956 + . ID=CGI_10016869; scaffold1579 WUBlastX LINE_L1 324997 325464 39 + . . scaffold1579 GLEAN mRNA 325428 327092 0.999956 + . ID=CGI_10016869; scaffold1579 WUBlastX LINE_RTE-X 325428 327092 698 + . . scaffold1579 GLEAN mRNA 352715 352742 0.999997 - . ID=CGI_10016871; scaffold1579 TRF Tandem_Repeat 352715 352742 56 + . . scaffold1579 GLEAN mRNA 362000 362030 0.857989 + . ID=CGI_10016872; scaffold1579 TRF Tandem_Repeat 362000 362030 62 + . . scaffold1579 GLEAN mRNA 360056 360724 0.857989 + . ID=CGI_10016872; scaffold1579 TRF Tandem_Repeat 360056 360724 707 + . . scaffold1579 GLEAN mRNA 379563 379611 0.999938 + . ID=CGI_10016873; scaffold1579 TRF Tandem_Repeat 379563 379611 91 + . . scaffold1579 GLEAN mRNA 380355 380962 0.999938 + . ID=CGI_10016873; scaffold1579 TRF Tandem_Repeat 380355 380962 450 + . . scaffold1579 GLEAN mRNA 380355 380962 0.999938 + . ID=CGI_10016873; scaffold1579 TRF Tandem_Repeat 380355 380962 497 + . . scaffold1579 GLEAN mRNA 380677 380827 0.999938 + . ID=CGI_10016873; scaffold1579 TRF Tandem_Repeat 380677 380827 206 + . . scaffold1579 GLEAN mRNA 404355 404409 0.790768 + . ID=CGI_10016876; scaffold1579 TRF Tandem_Repeat 404355 404409 110 + . . scaffold1579 GLEAN mRNA 404436 404471 0.790768 + . ID=CGI_10016876; scaffold1579 TRF Tandem_Repeat 404436 404471 72 + . . scaffold1579 GLEAN mRNA 423435 423495 0.687518 + . ID=CGI_10016877; scaffold1579 TRF Tandem_Repeat 423435 423495 104 + . . scaffold1579 GLEAN mRNA 436657 436701 0.687518 + . ID=CGI_10016877; scaffold1579 TRF Tandem_Repeat 436657 436701 90 + . . scaffold1579 GLEAN mRNA 441322 441365 0.687518 + . ID=CGI_10016877; scaffold1579 TRF Tandem_Repeat 441322 441365 88 + . . scaffold1579 GLEAN mRNA 476645 476919 0.999415 + . ID=CGI_10016880; scaffold1579 TRF Tandem_Repeat 476645 476919 370 + . . scaffold1579 GLEAN mRNA 478663 478717 1 + . ID=CGI_10016881; scaffold1579 TRF Tandem_Repeat 478663 478717 110 + . . scaffold1016 GLEAN mRNA 152177 152333 1 - . ID=CGI_10016887; scaffold1016 TRF Tandem_Repeat 152177 152333 224 + . . scaffold1016 GLEAN mRNA 152522 152615 1 - . ID=CGI_10016887; scaffold1016 TRF Tandem_Repeat 152522 152615 89 + . . scaffold1016 GLEAN mRNA 152699 152841 1 - . ID=CGI_10016887; scaffold1016 TRF Tandem_Repeat 152699 152841 124 + . . scaffold1016 GLEAN mRNA 153516 153779 1 - . ID=CGI_10016887; scaffold1016 WUBlastX LINE_Penelope 153516 153779 46 + . . scaffold1016 GLEAN mRNA 202463 202536 0.773917 - . ID=CGI_10016888; scaffold1016 TRF Tandem_Repeat 202463 202536 84 + . . scaffold1016 GLEAN mRNA 202463 202548 0.773917 - . ID=CGI_10016888; scaffold1016 TRF Tandem_Repeat 202463 202548 84 + . . scaffold1016 GLEAN mRNA 246923 246952 0.734139 - . ID=CGI_10016890; scaffold1016 TRF Tandem_Repeat 246923 246952 60 + . . scaffold1016 GLEAN mRNA 283873 284367 0.804509 - . ID=CGI_10016891; scaffold1016 WUBlastX DNA_P 283873 284367 69 - . . scaffold1016 GLEAN mRNA 283942 284322 0.804509 - . ID=CGI_10016891; scaffold1016 WUBlastX DNA_P 283942 284322 92 - . . scaffold1016 GLEAN mRNA 283867 284538 0.804509 - . ID=CGI_10016891; scaffold1016 WUBlastX DNA_P 283867 284538 43 - . . scaffold1016 GLEAN mRNA 306544 306672 0.991277 - . ID=CGI_10016894; scaffold1016 WUBlastX LINE_L1-Tx1 306544 306672 96 + . . scaffold1016 GLEAN mRNA 306665 307249 0.991277 - . ID=CGI_10016894; scaffold1016 WUBlastX LINE_L1-Tx1 306665 307249 178 + . . scaffold1016 GLEAN mRNA 308033 308197 0.991277 - . ID=CGI_10016894; scaffold1016 WUBlastX LINE_L1-Tx1 308033 308197 39 + . . scaffold1016 GLEAN mRNA 308211 308345 0.991277 - . ID=CGI_10016894; scaffold1016 WUBlastX LINE_L1-Tx1 308211 308345 56 + . . scaffold1016 GLEAN mRNA 306261 306518 0.991277 - . ID=CGI_10016894; scaffold1016 WUBlastX LINE_L1 306261 306518 21 + . . scaffold1016 GLEAN mRNA 306363 306545 0.991277 - . ID=CGI_10016894; scaffold1016 WUBlastX LINE_L1 306363 306545 63 + . . scaffold1016 GLEAN mRNA 311042 311100 0.968712 + . ID=CGI_10016895; scaffold1016 WUBlastX LTR_Gypsy 311042 311491 90 + . . scaffold1016 GLEAN mRNA 311033 311100 0.968712 + . ID=CGI_10016895; scaffold1016 WUBlastX LTR_Gypsy 311033 311686 65 + . . scaffold1016 GLEAN mRNA 434053 434250 0.686938 + . ID=CGI_10016898; scaffold1016 WUBlastX DNA_IS4EU 433861 434250 73 + . . scaffold1016 GLEAN mRNA 436147 436197 0.999985 - . ID=CGI_10016899; scaffold1016 TRF Tandem_Repeat 436147 436197 102 + . . scaffold1016 GLEAN mRNA 436430 436483 0.999985 - . ID=CGI_10016899; scaffold1016 TRF Tandem_Repeat 436430 436483 99 + . . scaffold1016 GLEAN mRNA 436147 436197 0.995791 + . ID=CGI_10016900; scaffold1016 TRF Tandem_Repeat 436147 436197 102 + . . scaffold1016 GLEAN mRNA 436430 436483 0.995791 + . ID=CGI_10016900; scaffold1016 TRF Tandem_Repeat 436430 436483 99 + . . scaffold1016 GLEAN mRNA 467768 467989 0.532282 + . ID=CGI_10016902; scaffold1016 WUBlastX DNA_Kolobok 467768 467989 42 + . . scaffold1016 GLEAN mRNA 468113 468271 0.532282 + . ID=CGI_10016902; scaffold1016 WUBlastX DNA_Kolobok 468113 468271 37 + . . scaffold1016 GLEAN mRNA 468273 468362 0.532282 + . ID=CGI_10016902; scaffold1016 WUBlastX DNA_Kolobok 468273 468362 33 + . . scaffold1016 GLEAN mRNA 468926 469234 0.532282 + . ID=CGI_10016902; scaffold1016 WUBlastX DNA_Kolobok 468926 469234 92 + . . scaffold1767 GLEAN mRNA 23332 23373 0.650508 + . ID=CGI_10016903; scaffold1767 TRF Tandem_Repeat 23332 23373 84 + . . scaffold1767 GLEAN mRNA 24240 24308 0.650508 + . ID=CGI_10016903; scaffold1767 TRF Tandem_Repeat 24240 24308 138 + . . scaffold1767 GLEAN mRNA 93699 95615 0.99967 + . ID=CGI_10016907; scaffold1767 WUBlastX LINE_L1-Tx1 93699 95615 458 + . . scaffold1767 GLEAN mRNA 93098 93199 0.99967 + . ID=CGI_10016907; scaffold1767 WUBlastX LINE_RTE-BovB 93098 93199 23 + . . scaffold1767 GLEAN mRNA 105316 105352 0.558354 + . ID=CGI_10016908; scaffold1767 TRF Tandem_Repeat 105316 105352 74 + . . scaffold1767 GLEAN mRNA 106701 106736 0.558354 + . ID=CGI_10016908; scaffold1767 TRF Tandem_Repeat 106701 106736 72 + . . scaffold1767 GLEAN mRNA 134501 134574 0.999949 - . ID=CGI_10016909; scaffold1767 TRF Tandem_Repeat 134501 134574 141 + . . scaffold1767 GLEAN mRNA 136997 138080 0.999949 - . ID=CGI_10016909; scaffold1767 TRF Tandem_Repeat 136997 138080 1394 + . . scaffold1767 GLEAN mRNA 139847 139912 0.999949 - . ID=CGI_10016909; scaffold1767 TRF Tandem_Repeat 139847 139912 80 + . . scaffold1767 GLEAN mRNA 141745 141774 0.999949 - . ID=CGI_10016909; scaffold1767 TRF Tandem_Repeat 141745 141774 60 + . . scaffold1767 GLEAN mRNA 145628 145687 0.999949 - . ID=CGI_10016909; scaffold1767 TRF Tandem_Repeat 145628 145687 75 + . . scaffold1767 GLEAN mRNA 145628 145687 0.999949 - . ID=CGI_10016909; scaffold1767 TRF Tandem_Repeat 145628 145687 84 + . . scaffold1767 GLEAN mRNA 152495 152534 0.999949 - . ID=CGI_10016909; scaffold1767 TRF Tandem_Repeat 152495 152534 53 + . . scaffold1767 GLEAN mRNA 155275 155317 0.999949 - . ID=CGI_10016909; scaffold1767 TRF Tandem_Repeat 155275 155317 77 + . . scaffold1767 GLEAN mRNA 174026 174166 0.633694 - . ID=CGI_10016910; scaffold1767 WUBlastX LTR_Copia 174026 174166 32 - . . scaffold1767 GLEAN mRNA 272772 272804 0.889923 - . ID=CGI_10016919; scaffold1767 TRF Tandem_Repeat 272772 272804 57 + . . scaffold1767 GLEAN mRNA 289387 289435 0.867024 + . ID=CGI_10016920; scaffold1767 TRF Tandem_Repeat 289387 289435 89 + . . scaffold1767 GLEAN mRNA 308992 309049 0.91566 - . ID=CGI_10016921; scaffold1767 TRF Tandem_Repeat 308992 309049 109 + . . scaffold1767 GLEAN mRNA 313543 313604 0.91566 - . ID=CGI_10016921; scaffold1767 TRF Tandem_Repeat 313543 313604 81 + . . scaffold1767 GLEAN mRNA 315732 315768 0.91566 - . ID=CGI_10016921; scaffold1767 TRF Tandem_Repeat 315732 315768 74 + . . scaffold1767 GLEAN mRNA 328684 328749 0.685963 - . ID=CGI_10016922; scaffold1767 TRF Tandem_Repeat 328684 328749 105 + . . scaffold1767 GLEAN mRNA 373975 374355 0.998695 - . ID=CGI_10016926; scaffold1767 WUBlastX DNA_Maverick 373975 374355 30 - . . scaffold1767 GLEAN mRNA 375745 377310 0.998695 - . ID=CGI_10016926; scaffold1767 WUBlastX DNA_hAT 375745 377310 427 - . . scaffold1767 GLEAN mRNA 406168 406236 0.999027 + . ID=CGI_10016928; scaffold1767 TRF Tandem_Repeat 406168 406236 111 + . . scaffold1767 GLEAN mRNA 410018 410322 0.999027 + . ID=CGI_10016928; scaffold1767 TRF Tandem_Repeat 410018 410322 110 + . . scaffold1767 GLEAN mRNA 410152 410322 0.999027 + . ID=CGI_10016928; scaffold1767 TRF Tandem_Repeat 410152 410322 145 + . . scaffold1767 GLEAN mRNA 410243 410304 0.999027 + . ID=CGI_10016928; scaffold1767 TRF Tandem_Repeat 410243 410304 51 + . . scaffold1767 GLEAN mRNA 445121 446081 0.149913 + . ID=CGI_10016931; scaffold1767 TRF Tandem_Repeat 445121 446081 1396 + . . scaffold1767 GLEAN mRNA 456307 456351 0.149913 + . ID=CGI_10016931; scaffold1767 TRF Tandem_Repeat 456307 456351 90 + . . scaffold1767 GLEAN mRNA 468879 469832 0.149913 + . ID=CGI_10016931; scaffold1767 TRF Tandem_Repeat 468879 469832 1234 + . . scaffold1391 GLEAN mRNA 197599 197653 0.999675 - . ID=CGI_10016938; scaffold1391 TRF Tandem_Repeat 197599 197653 110 + . . scaffold1391 GLEAN mRNA 204384 204834 0.590501 + . ID=CGI_10016939; scaffold1391 TRF Tandem_Repeat 204384 204834 498 + . . scaffold1391 GLEAN mRNA 204652 204796 0.590501 + . ID=CGI_10016939; scaffold1391 TRF Tandem_Repeat 204652 204796 182 + . . scaffold1391 GLEAN mRNA 224788 224995 0.998841 - . ID=CGI_10016942; scaffold1391 TRF Tandem_Repeat 224788 224995 133 + . . scaffold1391 GLEAN mRNA 224758 225009 0.998841 - . ID=CGI_10016942; scaffold1391 TRF Tandem_Repeat 224758 225009 450 + . . scaffold1391 GLEAN mRNA 231195 231544 0.998841 - . ID=CGI_10016942; scaffold1391 TRF Tandem_Repeat 231195 231544 219 + . . scaffold1391 GLEAN mRNA 232289 232449 0.998841 - . ID=CGI_10016942; scaffold1391 TRF Tandem_Repeat 232289 232449 161 + . . scaffold1391 GLEAN mRNA 300079 300184 0.717951 + . ID=CGI_10016946; scaffold1391 TRF Tandem_Repeat 300079 300317 136 + . . scaffold1391 GLEAN mRNA 303636 303721 1 + . ID=CGI_10016947; scaffold1391 TRF Tandem_Repeat 303636 303721 163 + . . scaffold1391 GLEAN mRNA 354171 354237 0.79473 + . ID=CGI_10016948; scaffold1391 TRF Tandem_Repeat 354171 354237 127 + . . scaffold1391 GLEAN mRNA 355496 355568 0.79473 + . ID=CGI_10016948; scaffold1391 TRF Tandem_Repeat 355496 355568 146 + . . scaffold1391 GLEAN mRNA 361242 361495 0.79473 + . ID=CGI_10016948; scaffold1391 TRF Tandem_Repeat 361242 361495 125 + . . scaffold1391 GLEAN mRNA 361242 361495 0.79473 + . ID=CGI_10016948; scaffold1391 TRF Tandem_Repeat 361242 361495 220 + . . scaffold1391 GLEAN mRNA 382889 382915 0.79473 + . ID=CGI_10016948; scaffold1391 TRF Tandem_Repeat 382889 382915 54 + . . scaffold1391 GLEAN mRNA 382953 383016 0.79473 + . ID=CGI_10016948; scaffold1391 TRF Tandem_Repeat 382953 383016 128 + . . scaffold1391 GLEAN mRNA 386155 386246 0.79473 + . ID=CGI_10016948; scaffold1391 TRF Tandem_Repeat 386155 386246 139 + . . scaffold117 GLEAN mRNA 29826 29875 0.501958 + . ID=CGI_10016953; scaffold117 TRF Tandem_Repeat 29826 29875 100 + . . scaffold117 GLEAN mRNA 28262 28414 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_L2 28262 28414 20 + . . scaffold117 GLEAN mRNA 28396 28626 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_L2 28396 28626 23 + . . scaffold117 GLEAN mRNA 34054 34107 0.501958 + . ID=CGI_10016953; scaffold117 TRF Tandem_Repeat 34054 34107 108 + . . scaffold117 GLEAN mRNA 46830 46921 0.501958 + . ID=CGI_10016953; scaffold117 TRF Tandem_Repeat 46830 46921 66 + . . scaffold117 GLEAN mRNA 37096 37284 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX DNA_Harbinger 37096 37284 26 - . . scaffold117 GLEAN mRNA 37174 37359 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX DNA_Harbinger 37174 37359 70 - . . scaffold117 GLEAN mRNA 36689 37099 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX DNA_Harbinger 36689 37099 202 - . . scaffold117 GLEAN mRNA 37591 37782 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX DNA_Harbinger 37591 37782 44 - . . scaffold117 GLEAN mRNA 59363 60043 0.501958 + . ID=CGI_10016953; scaffold117 TRF Tandem_Repeat 59363 60043 853 + . . scaffold117 GLEAN mRNA 61227 61956 0.501958 + . ID=CGI_10016953; scaffold117 TRF Tandem_Repeat 61227 61956 1016 + . . scaffold117 GLEAN mRNA 61252 61953 0.501958 + . ID=CGI_10016953; scaffold117 TRF Tandem_Repeat 61252 61953 1122 + . . scaffold117 GLEAN mRNA 53134 53238 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_CR1 53134 53238 53 + . . scaffold117 GLEAN mRNA 53849 53989 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_CR1 53849 53989 115 + . . scaffold117 GLEAN mRNA 53753 53992 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_CR1 53753 53992 93 + . . scaffold117 GLEAN mRNA 53394 53564 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_L2 53394 53564 21 + . . scaffold117 GLEAN mRNA 53122 53256 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_CR1 53122 53256 49 + . . scaffold117 GLEAN mRNA 53831 54082 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_CR1 53831 54082 105 + . . scaffold117 GLEAN mRNA 51521 52066 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_CR1 51521 52066 35 + . . scaffold117 GLEAN mRNA 51614 52027 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_CR1 51614 52027 217 + . . scaffold117 GLEAN mRNA 52014 52403 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_CR1 52014 52403 176 + . . scaffold117 GLEAN mRNA 53134 53319 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_CR1 53134 53319 45 + . . scaffold117 GLEAN mRNA 53687 53989 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_L2 53687 53989 75 + . . scaffold117 GLEAN mRNA 53615 53998 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_L2 53615 53998 57 + . . scaffold117 GLEAN mRNA 51710 52060 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_CR1 51710 52060 253 + . . scaffold117 GLEAN mRNA 53292 53525 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_L2 53292 53525 32 + . . scaffold117 GLEAN mRNA 53825 53983 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_CR1 53825 53983 113 + . . scaffold117 GLEAN mRNA 73091 74262 0.856569 + . ID=CGI_10016954; scaffold117 TRF Tandem_Repeat 73091 74262 1720 + . . scaffold117 GLEAN mRNA 75152 75249 0.856569 + . ID=CGI_10016954; scaffold117 TRF Tandem_Repeat 75152 75249 81 + . . scaffold117 GLEAN mRNA 75152 75250 0.856569 + . ID=CGI_10016954; scaffold117 TRF Tandem_Repeat 75152 75250 92 + . . scaffold117 GLEAN mRNA 77739 78340 0.856569 + . ID=CGI_10016954; scaffold117 TRF Tandem_Repeat 77739 78340 1057 + . . scaffold117 GLEAN mRNA 78856 78907 0.856569 + . ID=CGI_10016954; scaffold117 TRF Tandem_Repeat 78856 78907 104 + . . scaffold117 GLEAN mRNA 85906 85944 0.856569 + . ID=CGI_10016954; scaffold117 TRF Tandem_Repeat 85906 85944 62 + . . scaffold117 GLEAN mRNA 81830 82242 0.856569 + . ID=CGI_10016954; scaffold117 TRF Tandem_Repeat 81830 82242 266 + . . scaffold117 GLEAN mRNA 95290 95343 0.993969 + . ID=CGI_10016955; scaffold117 TRF Tandem_Repeat 95290 95343 72 + . . scaffold117 GLEAN mRNA 95286 95343 0.993969 + . ID=CGI_10016955; scaffold117 TRF Tandem_Repeat 95286 95343 80 + . . scaffold117 GLEAN mRNA 217645 217688 0.651137 + . ID=CGI_10016959; scaffold117 TRF Tandem_Repeat 217645 217688 88 + . . scaffold117 GLEAN mRNA 238221 238263 0.648025 + . ID=CGI_10016961; scaffold117 TRF Tandem_Repeat 238221 238263 86 + . . scaffold117 GLEAN mRNA 238686 238734 0.648025 + . ID=CGI_10016961; scaffold117 TRF Tandem_Repeat 238686 238734 55 + . . scaffold117 GLEAN mRNA 242386 242445 0.648025 + . ID=CGI_10016961; scaffold117 TRF Tandem_Repeat 242386 242445 57 + . . scaffold117 GLEAN mRNA 242382 242444 0.648025 + . ID=CGI_10016961; scaffold117 TRF Tandem_Repeat 242382 242444 81 + . . scaffold117 GLEAN mRNA 242379 242444 0.648025 + . ID=CGI_10016961; scaffold117 TRF Tandem_Repeat 242379 242444 51 + . . scaffold117 GLEAN mRNA 242379 242444 0.648025 + . ID=CGI_10016961; scaffold117 TRF Tandem_Repeat 242379 242444 87 + . . scaffold117 GLEAN mRNA 245003 245308 0.648025 + . ID=CGI_10016961; scaffold117 WUBlastX DNA_Kolobok 245003 245308 144 + . . scaffold117 GLEAN mRNA 247701 247835 0.648025 + . ID=CGI_10016961; scaffold117 WUBlastX DNA_Kolobok 247701 247835 33 - . . scaffold117 GLEAN mRNA 246458 246673 0.648025 + . ID=CGI_10016961; scaffold117 WUBlastX DNA_Kolobok 246458 246673 62 + . . scaffold117 GLEAN mRNA 246977 247213 0.648025 + . ID=CGI_10016961; scaffold117 WUBlastX DNA_Kolobok 246977 247213 72 + . . scaffold117 GLEAN mRNA 247390 247662 0.648025 + . ID=CGI_10016961; scaffold117 WUBlastX DNA_Kolobok 247390 247662 81 - . . scaffold117 GLEAN mRNA 245737 245979 0.648025 + . ID=CGI_10016961; scaffold117 WUBlastX DNA_Kolobok 245737 245979 136 + . . scaffold117 GLEAN mRNA 238221 238263 1 - . ID=CGI_10016962; scaffold117 TRF Tandem_Repeat 238221 238263 86 + . . scaffold117 GLEAN mRNA 238686 238734 1 - . ID=CGI_10016962; scaffold117 TRF Tandem_Repeat 238686 238734 55 + . . scaffold117 GLEAN mRNA 279782 279811 0.406248 - . ID=CGI_10016963; scaffold117 TRF Tandem_Repeat 279782 279811 60 + . . scaffold117 GLEAN mRNA 283406 283445 0.406248 - . ID=CGI_10016963; scaffold117 TRF Tandem_Repeat 283406 283445 53 + . . scaffold117 GLEAN mRNA 284123 285018 0.406248 - . ID=CGI_10016963; scaffold117 TRF Tandem_Repeat 284123 285018 1002 + . . scaffold117 GLEAN mRNA 284123 285018 0.406248 - . ID=CGI_10016963; scaffold117 TRF Tandem_Repeat 284123 285018 1109 + . . scaffold117 GLEAN mRNA 287866 287970 0.406248 - . ID=CGI_10016963; scaffold117 TRF Tandem_Repeat 287866 287970 63 + . . scaffold117 GLEAN mRNA 288291 288334 0.406248 - . ID=CGI_10016963; scaffold117 TRF Tandem_Repeat 288291 288334 88 + . . scaffold117 GLEAN mRNA 279237 279407 0.406248 - . ID=CGI_10016963; scaffold117 WUBlastX DNA_TcMar-Tc2 279237 279407 65 - . . scaffold117 GLEAN mRNA 300971 301157 0.24444 + . ID=CGI_10016964; scaffold117 TRF Tandem_Repeat 300971 301157 251 + . . scaffold117 GLEAN mRNA 355991 356095 0.986806 - . ID=CGI_10016967; scaffold117 WUBlastX DNA_TcMar-Tc1 355991 356095 53 + . . scaffold117 GLEAN mRNA 382852 383589 0.991601 + . ID=CGI_10016969; scaffold117 WUBlastX LTR_Gypsy 382852 383589 32 + . . scaffold117 GLEAN mRNA 382816 383238 0.991601 + . ID=CGI_10016969; scaffold117 WUBlastX LTR_Gypsy 382816 383238 100 + . . scaffold117 GLEAN mRNA 381940 382479 0.991601 + . ID=CGI_10016969; scaffold117 WUBlastX LTR_Gypsy-Cigr 381940 382479 174 + . . scaffold117 GLEAN mRNA 381802 382515 0.991601 + . ID=CGI_10016969; scaffold117 WUBlastX LTR_Gypsy 381802 382515 48 + . . scaffold117 GLEAN mRNA 382663 383148 0.991601 + . ID=CGI_10016969; scaffold117 WUBlastX LTR_Gypsy 382663 383148 80 + . . scaffold117 GLEAN mRNA 381961 382707 0.991601 + . ID=CGI_10016969; scaffold117 WUBlastX LTR_Gypsy 381961 382707 102 + . . scaffold117 GLEAN mRNA 382840 383316 0.991601 + . ID=CGI_10016969; scaffold117 WUBlastX LTR_Gypsy 382840 383316 55 + . . scaffold117 GLEAN mRNA 421182 421549 1 - . ID=CGI_10016972; scaffold117 TRF Tandem_Repeat 421182 421549 404 + . . scaffold117 GLEAN mRNA 443246 443453 0.996819 + . ID=CGI_10016974; scaffold117 TRF Tandem_Repeat 443246 443453 346 + . . scaffold117 GLEAN mRNA 461391 461440 0.99795 + . ID=CGI_10016975; scaffold117 TRF Tandem_Repeat 461391 461440 100 + . . scaffold1228 GLEAN mRNA 10954 10988 0.990524 + . ID=CGI_10016977; scaffold1228 TRF Tandem_Repeat 10954 10988 52 + . . scaffold1228 GLEAN mRNA 26045 26541 0.997233 + . ID=CGI_10016978; scaffold1228 TRF Tandem_Repeat 26045 26541 167 + . . scaffold1228 GLEAN mRNA 56127 56310 0.999676 + . ID=CGI_10016980; scaffold1228 TRF Tandem_Repeat 56127 56310 260 + . . scaffold1228 GLEAN mRNA 56127 56310 0.279262 - . ID=CGI_10016981; scaffold1228 TRF Tandem_Repeat 56127 56310 260 + . . scaffold1228 GLEAN mRNA 229552 229606 0.734404 + . ID=CGI_10016988; scaffold1228 TRF Tandem_Repeat 229552 229606 110 + . . scaffold1228 GLEAN mRNA 236968 237041 0.734404 + . ID=CGI_10016988; scaffold1228 TRF Tandem_Repeat 236968 237041 85 + . . scaffold1228 GLEAN mRNA 238894 239651 0.734404 + . ID=CGI_10016988; scaffold1228 TRF Tandem_Repeat 238894 239651 663 + . . scaffold1228 GLEAN mRNA 238894 239973 0.734404 + . ID=CGI_10016988; scaffold1228 TRF Tandem_Repeat 238894 239973 634 + . . scaffold1228 GLEAN mRNA 238894 239973 0.734404 + . ID=CGI_10016988; scaffold1228 TRF Tandem_Repeat 238894 239973 736 + . . scaffold1228 GLEAN mRNA 238910 239954 0.734404 + . ID=CGI_10016988; scaffold1228 TRF Tandem_Repeat 238910 239954 658 + . . scaffold1228 GLEAN mRNA 238898 239642 0.734404 + . ID=CGI_10016988; scaffold1228 TRF Tandem_Repeat 238898 239642 501 + . . scaffold1228 GLEAN mRNA 239690 239973 0.734404 + . ID=CGI_10016988; scaffold1228 TRF Tandem_Repeat 239690 239973 187 + . . scaffold1228 GLEAN mRNA 245074 245312 0.734404 + . ID=CGI_10016988; scaffold1228 TRF Tandem_Repeat 245074 245312 379 + . . scaffold1228 GLEAN mRNA 277592 277637 0.981805 + . ID=CGI_10016992; scaffold1228 TRF Tandem_Repeat 277592 277637 56 + . . scaffold1228 GLEAN mRNA 277592 277648 0.981805 + . ID=CGI_10016992; scaffold1228 TRF Tandem_Repeat 277592 277648 51 + . . scaffold1228 GLEAN mRNA 304188 304213 0.999611 - . ID=CGI_10016993; scaffold1228 TRF Tandem_Repeat 304188 304213 52 + . . scaffold1228 GLEAN mRNA 370051 370096 0.999996 + . ID=CGI_10016997; scaffold1228 TRF Tandem_Repeat 370051 370096 92 + . . scaffold1228 GLEAN mRNA 381455 381521 0.482439 - . ID=CGI_10016998; scaffold1228 TRF Tandem_Repeat 381455 381521 82 + . . scaffold1228 GLEAN mRNA 381455 381521 0.482439 - . ID=CGI_10016998; scaffold1228 TRF Tandem_Repeat 381455 381521 98 + . . scaffold1228 GLEAN mRNA 400897 400938 0.999063 + . ID=CGI_10016999; scaffold1228 TRF Tandem_Repeat 400897 400938 84 + . . scaffold1228 GLEAN mRNA 401873 401913 0.999063 + . ID=CGI_10016999; scaffold1228 TRF Tandem_Repeat 401873 401913 50 + . . scaffold1228 GLEAN mRNA 402675 403314 0.999063 + . ID=CGI_10016999; scaffold1228 TRF Tandem_Repeat 402675 403314 784 + . . scaffold1228 GLEAN mRNA 406322 406349 0.999063 + . ID=CGI_10016999; scaffold1228 TRF Tandem_Repeat 406322 406349 56 + . . scaffold1228 GLEAN mRNA 410203 410633 0.999063 + . ID=CGI_10016999; scaffold1228 TRF Tandem_Repeat 410203 410633 300 + . . scaffold1228 GLEAN mRNA 410227 410633 0.999063 + . ID=CGI_10016999; scaffold1228 TRF Tandem_Repeat 410227 410633 404 + . . scaffold1228 GLEAN mRNA 410235 410633 0.999063 + . ID=CGI_10016999; scaffold1228 TRF Tandem_Repeat 410235 410633 458 + . . scaffold1228 GLEAN mRNA 410203 410628 0.999063 + . ID=CGI_10016999; scaffold1228 TRF Tandem_Repeat 410203 410628 516 + . . scaffold1228 GLEAN mRNA 432923 432982 1 + . ID=CGI_10017002; scaffold1228 TRF Tandem_Repeat 432923 432982 54 + . . scaffold1228 GLEAN mRNA 454435 455652 1 - . ID=CGI_10017004; scaffold1228 TRF Tandem_Repeat 454435 455652 1729 + . . scaffold1228 GLEAN mRNA 455814 455844 1 - . ID=CGI_10017004; scaffold1228 TRF Tandem_Repeat 455814 455844 53 + . . scaffold1228 GLEAN mRNA 468724 468763 0.528865 - . ID=CGI_10017006; scaffold1228 TRF Tandem_Repeat 468724 468763 53 + . . scaffold1228 GLEAN mRNA 473566 473636 0.528865 - . ID=CGI_10017006; scaffold1228 TRF Tandem_Repeat 473566 473636 79 + . . scaffold1228 GLEAN mRNA 474911 475132 0.528865 - . ID=CGI_10017006; scaffold1228 WUBlastX LINE_CR1-L2 474911 475132 56 - . . scaffold1228 GLEAN mRNA 475137 475901 0.528865 - . ID=CGI_10017006; scaffold1228 WUBlastX LINE_L2 475137 475901 398 - . . scaffold1228 GLEAN mRNA 475840 476595 0.528865 - . ID=CGI_10017006; scaffold1228 WUBlastX LINE_L2 475840 476595 522 - . . scaffold1228 GLEAN mRNA 475870 476808 0.528865 - . ID=CGI_10017006; scaffold1228 WUBlastX LINE_CR1-L2 475870 476808 410 - . . scaffold1228 GLEAN mRNA 476933 476995 0.528865 - . ID=CGI_10017006; scaffold1228 WUBlastX LINE_CR1-L2 476933 476995 31 - . . scaffold1228 GLEAN mRNA 476604 476894 0.528865 - . ID=CGI_10017006; scaffold1228 WUBlastX LINE_L2 476604 476894 25 - . . scaffold1228 GLEAN mRNA 477041 477736 0.528865 - . ID=CGI_10017006; scaffold1228 WUBlastX LINE_RTE-X 477041 477736 165 - . . scaffold274 GLEAN mRNA 34097 34417 0.990803 + . ID=CGI_10017008; scaffold274 WUBlastX LINE_Penelope 34097 34417 89 - . . scaffold274 GLEAN mRNA 34001 34348 0.990803 + . ID=CGI_10017008; scaffold274 WUBlastX LINE_Penelope 34001 34348 84 - . . scaffold274 GLEAN mRNA 34133 34504 0.990803 + . ID=CGI_10017008; scaffold274 WUBlastX LINE_Penelope 34133 34504 68 - . . scaffold274 GLEAN mRNA 34079 34354 0.990803 + . ID=CGI_10017008; scaffold274 WUBlastX LINE_Penelope 34079 34354 92 - . . scaffold274 GLEAN mRNA 47572 48198 0.971857 - . ID=CGI_10017009; scaffold274 WUBlastX LINE_L2 47572 48198 143 + . . scaffold274 GLEAN mRNA 47803 48192 0.971857 - . ID=CGI_10017009; scaffold274 WUBlastX LINE_L1 47803 48192 197 + . . scaffold274 GLEAN mRNA 54349 54378 0.971857 - . ID=CGI_10017009; scaffold274 TRF Tandem_Repeat 54349 54378 60 + . . scaffold274 GLEAN mRNA 52024 53325 0.971857 - . ID=CGI_10017009; scaffold274 WUBlastX DNA_En-Spm 52024 53325 199 - . . scaffold274 GLEAN mRNA 53113 54228 0.971857 - . ID=CGI_10017009; scaffold274 WUBlastX DNA_En-Spm 53113 54228 302 - . . scaffold274 GLEAN mRNA 52447 53223 0.971857 - . ID=CGI_10017009; scaffold274 WUBlastX DNA_En-Spm 52447 53223 238 - . . scaffold274 GLEAN mRNA 53929 54348 0.971857 - . ID=CGI_10017009; scaffold274 WUBlastX DNA_En-Spm 53929 54348 25 - . . scaffold274 GLEAN mRNA 52618 53469 0.971857 - . ID=CGI_10017009; scaffold274 WUBlastX DNA_En-Spm 52618 53469 295 - . . scaffold274 GLEAN mRNA 66506 66595 0.971857 - . ID=CGI_10017009; scaffold274 TRF Tandem_Repeat 66506 66595 171 + . . scaffold274 GLEAN mRNA 71034 71078 0.999351 + . ID=CGI_10017011; scaffold274 TRF Tandem_Repeat 71034 71078 81 + . . scaffold274 GLEAN mRNA 71034 71081 0.999351 + . ID=CGI_10017011; scaffold274 TRF Tandem_Repeat 71034 71081 60 + . . scaffold274 GLEAN mRNA 125067 125454 0.999675 + . ID=CGI_10017013; scaffold274 TRF Tandem_Repeat 125067 125454 275 + . . scaffold274 GLEAN mRNA 120495 121184 0.999675 + . ID=CGI_10017013; scaffold274 WUBlastX LTR_Gypsy 120495 121184 130 - . . scaffold274 GLEAN mRNA 120699 121142 0.999675 + . ID=CGI_10017013; scaffold274 WUBlastX LTR_Gypsy 120699 121142 284 - . . scaffold274 GLEAN mRNA 121484 122536 0.999675 + . ID=CGI_10017013; scaffold274 WUBlastX LTR_Gypsy 121484 122536 546 - . . scaffold274 GLEAN mRNA 120699 121241 0.999675 + . ID=CGI_10017013; scaffold274 WUBlastX LTR_Gypsy 120699 121241 268 - . . scaffold274 GLEAN mRNA 120481 120570 0.999675 + . ID=CGI_10017013; scaffold274 WUBlastX LTR_Gypsy 120481 120570 44 - . . scaffold274 GLEAN mRNA 120615 121142 0.999675 + . ID=CGI_10017013; scaffold274 WUBlastX LTR_Gypsy 120615 121142 199 - . . scaffold274 GLEAN mRNA 121189 121455 0.999675 + . ID=CGI_10017013; scaffold274 WUBlastX LTR_Gypsy 121189 121455 198 - . . scaffold274 GLEAN mRNA 120427 120612 0.999675 + . ID=CGI_10017013; scaffold274 WUBlastX LTR_Gypsy 120427 120612 33 - . . scaffold274 GLEAN mRNA 136010 136702 0.999675 + . ID=CGI_10017013; scaffold274 WUBlastX LTR_Copia 136010 136702 150 + . . scaffold274 GLEAN mRNA 135725 136540 0.999675 + . ID=CGI_10017013; scaffold274 WUBlastX LTR_Copia 135725 136540 417 + . . scaffold274 GLEAN mRNA 125067 125454 0.900499 - . ID=CGI_10017014; scaffold274 TRF Tandem_Repeat 125067 125454 275 + . . scaffold274 GLEAN mRNA 120495 121184 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120495 121184 130 - . . scaffold274 GLEAN mRNA 120699 121142 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120699 121142 284 - . . scaffold274 GLEAN mRNA 121484 122536 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 121484 122536 546 - . . scaffold274 GLEAN mRNA 120699 121241 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120699 121241 268 - . . scaffold274 GLEAN mRNA 120481 120570 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120481 120570 44 - . . scaffold274 GLEAN mRNA 120615 121142 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120615 121142 199 - . . scaffold274 GLEAN mRNA 121189 121455 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 121189 121455 198 - . . scaffold274 GLEAN mRNA 120427 120612 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120427 120612 33 - . . scaffold274 GLEAN mRNA 172987 173051 1 - . ID=CGI_10017018; scaffold274 TRF Tandem_Repeat 172987 173051 130 + . . scaffold274 GLEAN mRNA 202766 202804 0.999676 - . ID=CGI_10017019; scaffold274 TRF Tandem_Repeat 202766 202804 78 + . . scaffold274 GLEAN mRNA 209807 209867 0.999999 + . ID=CGI_10017021; scaffold274 TRF Tandem_Repeat 209807 209867 122 + . . scaffold274 GLEAN mRNA 237395 237481 0.491585 + . ID=CGI_10017024; scaffold274 TRF Tandem_Repeat 237395 237481 95 + . . scaffold274 GLEAN mRNA 237565 237723 0.491585 + . ID=CGI_10017024; scaffold274 TRF Tandem_Repeat 237565 237723 210 + . . scaffold274 GLEAN mRNA 237791 237889 0.491585 + . ID=CGI_10017024; scaffold274 TRF Tandem_Repeat 237791 237889 101 + . . scaffold274 GLEAN mRNA 268717 268750 1 - . ID=CGI_10017030; scaffold274 TRF Tandem_Repeat 268717 268750 68 + . . scaffold274 GLEAN mRNA 277454 277491 1 - . ID=CGI_10017030; scaffold274 TRF Tandem_Repeat 277454 277491 60 + . . scaffold274 GLEAN mRNA 328824 328907 0.926033 - . ID=CGI_10017033; scaffold274 TRF Tandem_Repeat 328824 328907 134 + . . scaffold274 GLEAN mRNA 461222 461267 0.999674 - . ID=CGI_10017036; scaffold274 TRF Tandem_Repeat 461222 461267 58 + . . scaffold274 GLEAN mRNA 461306 461355 0.999674 - . ID=CGI_10017036; scaffold274 TRF Tandem_Repeat 461306 461355 55 + . . scaffold274 GLEAN mRNA 470071 470179 0.973255 - . ID=CGI_10017037; scaffold274 TRF Tandem_Repeat 470071 470179 200 + . . scaffold274 GLEAN mRNA 471750 471811 0.973255 - . ID=CGI_10017037; scaffold274 TRF Tandem_Repeat 471750 471811 115 + . . scaffold274 GLEAN mRNA 473807 473918 0.973255 - . ID=CGI_10017037; scaffold274 TRF Tandem_Repeat 473807 473918 170 + . . scaffold487 GLEAN mRNA 132739 132793 0.995434 + . ID=CGI_10017041; scaffold487 TRF Tandem_Repeat 132739 132793 110 + . . scaffold487 GLEAN mRNA 137322 137880 0.995434 + . ID=CGI_10017041; scaffold487 TRF Tandem_Repeat 137322 137880 822 + . . scaffold487 GLEAN mRNA 138134 138560 0.995434 + . ID=CGI_10017041; scaffold487 TRF Tandem_Repeat 138134 138560 629 + . . scaffold487 GLEAN mRNA 180151 180189 1 + . ID=CGI_10017043; scaffold487 TRF Tandem_Repeat 180151 180189 51 + . . scaffold487 GLEAN mRNA 225268 225293 0.999999 - . ID=CGI_10017045; scaffold487 TRF Tandem_Repeat 225268 225293 52 + . . scaffold487 GLEAN mRNA 284584 284877 0.712681 + . ID=CGI_10017050; scaffold487 TRF Tandem_Repeat 284584 284877 442 + . . scaffold487 GLEAN mRNA 371238 371273 0.738574 + . ID=CGI_10017051; scaffold487 TRF Tandem_Repeat 371238 371273 56 + . . scaffold487 GLEAN mRNA 439710 439757 1 + . ID=CGI_10017053; scaffold487 TRF Tandem_Repeat 439710 439757 69 + . . scaffold487 GLEAN mRNA 439701 439757 1 + . ID=CGI_10017053; scaffold487 TRF Tandem_Repeat 439701 439757 78 + . . scaffold487 GLEAN mRNA 432993 436949 1 + . ID=CGI_10017053; scaffold487 WUBlastX LTR_Gypsy 432993 436949 3602 - . . scaffold487 GLEAN mRNA 439977 440111 1 + . ID=CGI_10017053; scaffold487 WUBlastX DNA_P 439977 440111 21 - . . scaffold487 GLEAN mRNA 440360 440506 1 + . ID=CGI_10017053; scaffold487 WUBlastX DNA_P 440360 440506 71 - . . scaffold487 GLEAN mRNA 439996 440111 0.39713 - . ID=CGI_10017054; scaffold487 WUBlastX DNA_P 439977 440111 21 - . . scaffold487 GLEAN mRNA 440360 440506 0.39713 - . ID=CGI_10017054; scaffold487 WUBlastX DNA_P 440360 440506 71 - . . scaffold487 GLEAN mRNA 441902 442141 0.39713 - . ID=CGI_10017054; scaffold487 WUBlastX DNA_Kolobok 441902 442141 95 + . . scaffold487 GLEAN mRNA 441998 442141 0.39713 - . ID=CGI_10017054; scaffold487 WUBlastX DNA_Kolobok 441998 442141 95 + . . scaffold487 GLEAN mRNA 447013 447135 0.39713 - . ID=CGI_10017054; scaffold487 WUBlastX DNA_P 447013 447177 26 - . . scaffold487 GLEAN mRNA 484013 484210 0.999375 + . ID=CGI_10017056; scaffold487 WUBlastX LINE_RTE-X 484013 484210 41 - . . scaffold747 GLEAN mRNA 93087 93125 0.627527 - . ID=CGI_10017060; scaffold747 TRF Tandem_Repeat 93087 93125 69 + . . scaffold747 GLEAN mRNA 133004 133278 0.979156 - . ID=CGI_10017062; scaffold747 TRF Tandem_Repeat 133004 133278 451 + . . scaffold747 GLEAN mRNA 134028 135006 0.979156 - . ID=CGI_10017062; scaffold747 TRF Tandem_Repeat 134028 135006 1461 + . . scaffold747 GLEAN mRNA 150356 150446 0.979156 - . ID=CGI_10017062; scaffold747 TRF Tandem_Repeat 150356 150446 146 + . . scaffold747 GLEAN mRNA 150412 150501 0.979156 - . ID=CGI_10017062; scaffold747 TRF Tandem_Repeat 150412 150501 90 + . . scaffold747 GLEAN mRNA 152125 152231 0.979156 - . ID=CGI_10017062; scaffold747 TRF Tandem_Repeat 152125 152231 124 + . . scaffold747 GLEAN mRNA 296006 296036 1 + . ID=CGI_10017071; scaffold747 TRF Tandem_Repeat 296006 296036 62 + . . scaffold747 GLEAN mRNA 316170 316205 0.469694 + . ID=CGI_10017073; scaffold747 TRF Tandem_Repeat 316170 316205 72 + . . scaffold747 GLEAN mRNA 318916 318950 0.469694 + . ID=CGI_10017073; scaffold747 TRF Tandem_Repeat 318916 318950 70 + . . scaffold747 GLEAN mRNA 323871 324648 0.469694 + . ID=CGI_10017073; scaffold747 TRF Tandem_Repeat 323871 324648 908 + . . scaffold747 GLEAN mRNA 410841 411115 0.881161 - . ID=CGI_10017078; scaffold747 TRF Tandem_Repeat 410841 411115 403 + . . scaffold747 GLEAN mRNA 413633 413687 0.881161 - . ID=CGI_10017078; scaffold747 TRF Tandem_Repeat 413633 413687 74 + . . scaffold747 GLEAN mRNA 471049 471089 0.999999 - . ID=CGI_10017080; scaffold747 TRF Tandem_Repeat 471049 471089 82 + . . scaffold335 GLEAN mRNA 22194 22237 0.651134 - . ID=CGI_10017082; scaffold335 TRF Tandem_Repeat 22194 22237 88 + . . scaffold335 GLEAN mRNA 36628 38012 0.791399 - . ID=CGI_10017083; scaffold335 TRF Tandem_Repeat 36628 38012 1887 + . . scaffold335 GLEAN mRNA 52257 52562 0.791399 - . ID=CGI_10017083; scaffold335 WUBlastX LTR_DIRS 52257 52562 154 - . . scaffold335 GLEAN mRNA 51363 52499 0.791399 - . ID=CGI_10017083; scaffold335 WUBlastX LTR_DIRS 51363 52499 293 - . . scaffold335 GLEAN mRNA 51229 51369 0.791399 - . ID=CGI_10017083; scaffold335 WUBlastX LTR_DIRS 51229 51369 46 - . . scaffold335 GLEAN mRNA 64287 64345 0.475758 + . ID=CGI_10017084; scaffold335 TRF Tandem_Repeat 64287 64345 118 + . . scaffold335 GLEAN mRNA 74727 74929 0.475758 + . ID=CGI_10017084; scaffold335 TRF Tandem_Repeat 74727 74929 270 + . . scaffold335 GLEAN mRNA 74727 74929 0.764147 - . ID=CGI_10017085; scaffold335 TRF Tandem_Repeat 74727 74929 270 + . . scaffold335 GLEAN mRNA 76236 76277 0.764147 - . ID=CGI_10017085; scaffold335 TRF Tandem_Repeat 76236 76277 84 + . . scaffold335 GLEAN mRNA 77733 77759 0.764147 - . ID=CGI_10017085; scaffold335 TRF Tandem_Repeat 77733 77759 54 + . . scaffold335 GLEAN mRNA 78748 78830 0.764147 - . ID=CGI_10017085; scaffold335 TRF Tandem_Repeat 78748 78830 159 + . . scaffold335 GLEAN mRNA 86015 86182 0.999317 - . ID=CGI_10017087; scaffold335 TRF Tandem_Repeat 86015 86182 167 + . . scaffold335 GLEAN mRNA 107434 107663 0.999675 - . ID=CGI_10017090; scaffold335 TRF Tandem_Repeat 107434 107663 83 + . . scaffold335 GLEAN mRNA 170726 170751 0.289702 - . ID=CGI_10017092; scaffold335 TRF Tandem_Repeat 170726 170751 52 + . . scaffold335 GLEAN mRNA 176402 176609 0.289702 - . ID=CGI_10017092; scaffold335 TRF Tandem_Repeat 176402 176609 407 + . . scaffold335 GLEAN mRNA 177047 177316 0.289702 - . ID=CGI_10017092; scaffold335 TRF Tandem_Repeat 177047 177316 540 + . . scaffold335 GLEAN mRNA 193278 193324 0.566602 - . ID=CGI_10017094; scaffold335 TRF Tandem_Repeat 193278 193324 94 + . . scaffold335 GLEAN mRNA 195262 195380 0.566602 - . ID=CGI_10017094; scaffold335 TRF Tandem_Repeat 195262 195380 93 + . . scaffold335 GLEAN mRNA 237778 237825 1 + . ID=CGI_10017098; scaffold335 TRF Tandem_Repeat 237778 237825 60 + . . scaffold335 GLEAN mRNA 254532 254715 0.999354 - . ID=CGI_10017099; scaffold335 TRF Tandem_Repeat 254532 254715 151 + . . scaffold335 GLEAN mRNA 264779 264913 0.999354 - . ID=CGI_10017099; scaffold335 TRF Tandem_Repeat 264779 264913 200 + . . scaffold335 GLEAN mRNA 271399 271447 0.999354 - . ID=CGI_10017099; scaffold335 TRF Tandem_Repeat 271399 271447 98 + . . scaffold335 GLEAN mRNA 287436 287505 1 + . ID=CGI_10017101; scaffold335 TRF Tandem_Repeat 287436 287505 96 + . . scaffold335 GLEAN mRNA 287437 287502 1 + . ID=CGI_10017101; scaffold335 TRF Tandem_Repeat 287437 287502 71 + . . scaffold335 GLEAN mRNA 292310 293059 1 + . ID=CGI_10017101; scaffold335 TRF Tandem_Repeat 292310 293059 1021 + . . scaffold335 GLEAN mRNA 307292 307596 1 - . ID=CGI_10017102; scaffold335 TRF Tandem_Repeat 307292 307596 271 + . . scaffold335 GLEAN mRNA 328483 328770 0.187812 + . ID=CGI_10017103; scaffold335 TRF Tandem_Repeat 328483 328770 305 + . . scaffold335 GLEAN mRNA 331807 332072 0.187812 + . ID=CGI_10017103; scaffold335 TRF Tandem_Repeat 331807 332072 171 + . . scaffold335 GLEAN mRNA 332108 332490 0.187812 + . ID=CGI_10017103; scaffold335 TRF Tandem_Repeat 332108 332490 650 + . . scaffold335 GLEAN mRNA 332108 332490 0.187812 + . ID=CGI_10017103; scaffold335 TRF Tandem_Repeat 332108 332490 653 + . . scaffold335 GLEAN mRNA 332108 332490 0.187812 + . ID=CGI_10017103; scaffold335 TRF Tandem_Repeat 332108 332490 650 + . . scaffold335 GLEAN mRNA 337577 337606 0.187812 + . ID=CGI_10017103; scaffold335 TRF Tandem_Repeat 337577 338217 813 + . . scaffold335 GLEAN mRNA 382767 382826 0.458743 - . ID=CGI_10017105; scaffold335 TRF Tandem_Repeat 382767 382826 77 + . . scaffold335 GLEAN mRNA 383982 384590 0.458743 - . ID=CGI_10017105; scaffold335 WUBlastX LINE_L1-Tx1 383982 384590 75 - . . scaffold335 GLEAN mRNA 382938 384443 0.458743 - . ID=CGI_10017105; scaffold335 WUBlastX LINE_L1-Tx1 382938 384443 347 - . . scaffold335 GLEAN mRNA 385063 385233 0.458743 - . ID=CGI_10017105; scaffold335 WUBlastX LINE_L1 385063 385233 25 - . . scaffold335 GLEAN mRNA 427450 427492 1 + . ID=CGI_10017108; scaffold335 TRF Tandem_Repeat 427450 427492 86 + . . scaffold335 GLEAN mRNA 433372 433433 1 + . ID=CGI_10017108; scaffold335 TRF Tandem_Repeat 433372 433433 124 + . . scaffold335 GLEAN mRNA 449833 449881 0.999675 + . ID=CGI_10017109; scaffold335 TRF Tandem_Repeat 449833 449881 98 + . . scaffold335 GLEAN mRNA 479784 479813 0.288148 + . ID=CGI_10017112; scaffold335 WUBlastX DNA_MuDR 479784 480638 34 + . . scaffold1397 GLEAN mRNA 24052 24351 0.684002 - . ID=CGI_10017113; scaffold1397 WUBlastX LTR_Ngaro 24052 24351 239 + . . scaffold1397 GLEAN mRNA 23130 24074 0.684002 - . ID=CGI_10017113; scaffold1397 WUBlastX LTR_Ngaro 23130 24074 173 + . . scaffold1397 GLEAN mRNA 24351 24869 0.684002 - . ID=CGI_10017113; scaffold1397 WUBlastX LTR_Ngaro 24351 24869 183 + . . scaffold1397 GLEAN mRNA 24890 25267 0.684002 - . ID=CGI_10017113; scaffold1397 WUBlastX LTR_Ngaro 24890 25267 169 + . . scaffold1397 GLEAN mRNA 24052 24092 0.999994 + . ID=CGI_10017114; scaffold1397 WUBlastX LTR_Ngaro 24052 24351 239 + . . scaffold1397 GLEAN mRNA 23367 24074 0.999994 + . ID=CGI_10017114; scaffold1397 WUBlastX LTR_Ngaro 23130 24074 173 + . . scaffold1397 GLEAN mRNA 135871 136386 0.995825 + . ID=CGI_10017117; scaffold1397 WUBlastX DNA_Sola 135871 136386 31 + . . scaffold1397 GLEAN mRNA 135079 135828 0.995825 + . ID=CGI_10017117; scaffold1397 WUBlastX DNA_Sola 134947 135828 35 + . . scaffold1397 GLEAN mRNA 135952 136779 0.995825 + . ID=CGI_10017117; scaffold1397 WUBlastX DNA_Sola 135952 136779 184 + . . scaffold1397 GLEAN mRNA 209311 209354 0.644927 - . ID=CGI_10017120; scaffold1397 TRF Tandem_Repeat 209311 209354 54 + . . scaffold1397 GLEAN mRNA 209719 209871 0.644927 - . ID=CGI_10017120; scaffold1397 WUBlastX DNA_IS4EU 209719 209871 71 - . . scaffold1397 GLEAN mRNA 209868 210170 0.644927 - . ID=CGI_10017120; scaffold1397 WUBlastX DNA_IS4EU 209868 210170 222 - . . scaffold1397 GLEAN mRNA 209802 210164 0.644927 - . ID=CGI_10017120; scaffold1397 WUBlastX DNA_Kolobok-IS4 209802 210164 141 - . . scaffold1397 GLEAN mRNA 210130 210384 0.644927 - . ID=CGI_10017120; scaffold1397 WUBlastX DNA_Kolobok-IS4 210130 210384 44 - . . scaffold1397 GLEAN mRNA 221195 221227 0.644927 - . ID=CGI_10017120; scaffold1397 TRF Tandem_Repeat 221195 221227 66 + . . scaffold1397 GLEAN mRNA 217787 219592 0.644927 - . ID=CGI_10017120; scaffold1397 WUBlastX DNA_Sola 217787 219592 352 - . . scaffold1397 GLEAN mRNA 280234 280527 1 + . ID=CGI_10017121; scaffold1397 WUBlastX DNA_hAT-Tip100 280006 280527 75 + . . scaffold1397 GLEAN mRNA 342525 342553 1 + . ID=CGI_10017122; scaffold1397 TRF Tandem_Repeat 342525 342553 58 + . . scaffold1397 GLEAN mRNA 347224 347285 0.949523 - . ID=CGI_10017123; scaffold1397 TRF Tandem_Repeat 347224 347285 115 + . . scaffold1397 GLEAN mRNA 428583 428775 1 + . ID=CGI_10017127; scaffold1397 TRF Tandem_Repeat 428583 428775 296 + . . scaffold1397 GLEAN mRNA 432560 432719 1 + . ID=CGI_10017127; scaffold1397 TRF Tandem_Repeat 432560 432719 115 + . . scaffold1397 GLEAN mRNA 433284 433820 1 + . ID=CGI_10017127; scaffold1397 TRF Tandem_Repeat 433284 433820 975 + . . scaffold1397 GLEAN mRNA 446789 446946 0.499998 + . ID=CGI_10017128; scaffold1397 TRF Tandem_Repeat 446789 446946 145 + . . scaffold1397 GLEAN mRNA 449542 450390 0.499998 + . ID=CGI_10017128; scaffold1397 TRF Tandem_Repeat 449542 450390 700 + . . scaffold1397 GLEAN mRNA 449517 450345 0.499998 + . ID=CGI_10017128; scaffold1397 TRF Tandem_Repeat 449517 450345 611 + . . scaffold1397 GLEAN mRNA 449618 450066 0.499998 + . ID=CGI_10017128; scaffold1397 TRF Tandem_Repeat 449618 450066 77 + . . scaffold1397 GLEAN mRNA 449542 450390 0.941831 - . ID=CGI_10017129; scaffold1397 TRF Tandem_Repeat 449542 450390 700 + . . scaffold1397 GLEAN mRNA 449517 450345 0.941831 - . ID=CGI_10017129; scaffold1397 TRF Tandem_Repeat 449517 450345 611 + . . scaffold1397 GLEAN mRNA 449618 450066 0.941831 - . ID=CGI_10017129; scaffold1397 TRF Tandem_Repeat 449618 450066 77 + . . scaffold1397 GLEAN mRNA 452044 452317 0.941831 - . ID=CGI_10017129; scaffold1397 TRF Tandem_Repeat 452044 452317 395 + . . scaffold1397 GLEAN mRNA 464717 464749 0.999395 - . ID=CGI_10017131; scaffold1397 TRF Tandem_Repeat 464717 464749 66 + . . scaffold1397 GLEAN mRNA 469061 469124 0.999395 - . ID=CGI_10017131; scaffold1397 TRF Tandem_Repeat 469061 469124 83 + . . scaffold1397 GLEAN mRNA 469101 469339 0.999395 - . ID=CGI_10017131; scaffold1397 TRF Tandem_Repeat 469101 469339 111 + . . scaffold1397 GLEAN mRNA 469101 469339 0.999395 - . ID=CGI_10017131; scaffold1397 TRF Tandem_Repeat 469101 469339 71 + . . scaffold794 GLEAN mRNA 36893 37609 0.999922 - . ID=CGI_10017134; scaffold794 WUBlastX DNA_Crypton 36893 37609 177 - . . scaffold794 GLEAN mRNA 68418 68460 0.999826 + . ID=CGI_10017136; scaffold794 TRF Tandem_Repeat 68418 68460 52 + . . scaffold794 GLEAN mRNA 68403 68452 0.999826 + . ID=CGI_10017136; scaffold794 TRF Tandem_Repeat 68403 68452 73 + . . scaffold794 GLEAN mRNA 71897 71939 0.999826 + . ID=CGI_10017136; scaffold794 TRF Tandem_Repeat 71897 71939 86 + . . scaffold794 GLEAN mRNA 74429 74454 0.999826 + . ID=CGI_10017136; scaffold794 TRF Tandem_Repeat 74429 74454 52 + . . scaffold794 GLEAN mRNA 75178 75546 0.999826 + . ID=CGI_10017136; scaffold794 WUBlastX LINE_Penelope 75178 75546 24 + . . scaffold794 GLEAN mRNA 75112 75468 0.999826 + . ID=CGI_10017136; scaffold794 WUBlastX LINE_Penelope 75112 75468 55 + . . scaffold794 GLEAN mRNA 109314 109480 1 - . ID=CGI_10017140; scaffold794 TRF Tandem_Repeat 109314 109480 128 + . . scaffold794 GLEAN mRNA 113071 113108 1 - . ID=CGI_10017140; scaffold794 TRF Tandem_Repeat 113071 113108 76 + . . scaffold794 GLEAN mRNA 113951 114319 1 - . ID=CGI_10017140; scaffold794 TRF Tandem_Repeat 113951 114319 412 + . . scaffold794 GLEAN mRNA 113951 114319 1 - . ID=CGI_10017140; scaffold794 TRF Tandem_Repeat 113951 114319 430 + . . scaffold794 GLEAN mRNA 120320 121151 0.998796 - . ID=CGI_10017141; scaffold794 TRF Tandem_Repeat 120320 121151 1121 + . . scaffold794 GLEAN mRNA 123667 123820 0.998796 - . ID=CGI_10017141; scaffold794 TRF Tandem_Repeat 123667 123820 238 + . . scaffold794 GLEAN mRNA 126646 127087 0.998796 - . ID=CGI_10017141; scaffold794 TRF Tandem_Repeat 126646 127087 647 + . . scaffold794 GLEAN mRNA 128002 128045 0.998796 - . ID=CGI_10017141; scaffold794 TRF Tandem_Repeat 128002 128045 72 + . . scaffold794 GLEAN mRNA 128183 129239 0.998796 - . ID=CGI_10017141; scaffold794 TRF Tandem_Repeat 128183 129239 1609 + . . scaffold794 GLEAN mRNA 133592 133903 0.777732 + . ID=CGI_10017142; scaffold794 TRF Tandem_Repeat 133592 133903 588 + . . scaffold794 GLEAN mRNA 134507 134608 0.777732 + . ID=CGI_10017142; scaffold794 TRF Tandem_Repeat 134507 134608 195 + . . scaffold794 GLEAN mRNA 142441 142483 0.777732 + . ID=CGI_10017142; scaffold794 TRF Tandem_Repeat 142441 142483 86 + . . scaffold794 GLEAN mRNA 146525 146565 0.777732 + . ID=CGI_10017142; scaffold794 TRF Tandem_Repeat 146525 146565 82 + . . scaffold794 GLEAN mRNA 170631 171617 0.192364 + . ID=CGI_10017146; scaffold794 TRF Tandem_Repeat 170631 171617 1250 + . . scaffold794 GLEAN mRNA 174580 174813 0.192364 + . ID=CGI_10017146; scaffold794 TRF Tandem_Repeat 174580 174813 468 + . . scaffold794 GLEAN mRNA 208037 209243 0.999676 + . ID=CGI_10017148; scaffold794 TRF Tandem_Repeat 208037 209243 1957 + . . scaffold794 GLEAN mRNA 209603 210462 0.999676 + . ID=CGI_10017148; scaffold794 TRF Tandem_Repeat 209603 210462 1414 + . . scaffold794 GLEAN mRNA 209603 210462 0.999676 + . ID=CGI_10017148; scaffold794 TRF Tandem_Repeat 209603 210462 1432 + . . scaffold794 GLEAN mRNA 210459 211098 0.999676 + . ID=CGI_10017148; scaffold794 TRF Tandem_Repeat 210459 211098 1074 + . . scaffold794 GLEAN mRNA 210459 211098 0.999676 + . ID=CGI_10017148; scaffold794 TRF Tandem_Repeat 210459 211098 774 + . . scaffold794 GLEAN mRNA 213838 214058 0.999676 + . ID=CGI_10017148; scaffold794 TRF Tandem_Repeat 213838 214058 210 + . . scaffold794 GLEAN mRNA 213859 214160 0.999676 + . ID=CGI_10017148; scaffold794 TRF Tandem_Repeat 213859 214160 331 + . . scaffold794 GLEAN mRNA 214106 214161 0.999676 + . ID=CGI_10017148; scaffold794 TRF Tandem_Repeat 214106 214161 52 + . . scaffold794 GLEAN mRNA 227030 227068 0.731792 - . ID=CGI_10017149; scaffold794 TRF Tandem_Repeat 227030 227068 78 + . . scaffold794 GLEAN mRNA 231843 231890 0.731792 - . ID=CGI_10017149; scaffold794 TRF Tandem_Repeat 231843 231890 53 + . . scaffold794 GLEAN mRNA 232955 233122 0.731792 - . ID=CGI_10017149; scaffold794 TRF Tandem_Repeat 232955 233122 309 + . . scaffold794 GLEAN mRNA 236003 236537 0.731792 - . ID=CGI_10017149; scaffold794 TRF Tandem_Repeat 236003 236537 755 + . . scaffold794 GLEAN mRNA 252673 252994 1 + . ID=CGI_10017152; scaffold794 TRF Tandem_Repeat 252673 252994 526 + . . scaffold794 GLEAN mRNA 252673 252994 1 + . ID=CGI_10017152; scaffold794 TRF Tandem_Repeat 252673 252994 581 + . . scaffold794 GLEAN mRNA 252673 252994 1 + . ID=CGI_10017152; scaffold794 TRF Tandem_Repeat 252673 252994 562 + . . scaffold794 GLEAN mRNA 253197 253843 1 + . ID=CGI_10017152; scaffold794 TRF Tandem_Repeat 253197 253843 1057 + . . scaffold794 GLEAN mRNA 254246 254755 1 + . ID=CGI_10017152; scaffold794 TRF Tandem_Repeat 254246 254755 759 + . . scaffold794 GLEAN mRNA 258921 259832 1 + . ID=CGI_10017152; scaffold794 TRF Tandem_Repeat 258921 259832 1426 + . . scaffold794 GLEAN mRNA 261139 261379 1 + . ID=CGI_10017152; scaffold794 TRF Tandem_Repeat 261139 261379 428 + . . scaffold794 GLEAN mRNA 262434 262511 1 + . ID=CGI_10017152; scaffold794 WUBlastX DNA_Harbinger 262434 262511 50 + . . scaffold794 GLEAN mRNA 263194 263304 1 + . ID=CGI_10017152; scaffold794 WUBlastX DNA_Harbinger 263194 263304 37 + . . scaffold794 GLEAN mRNA 263259 263363 1 + . ID=CGI_10017152; scaffold794 WUBlastX DNA_Harbinger 263259 263363 30 + . . scaffold794 GLEAN mRNA 271651 271869 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX DNA_TcMar-Fot1 271651 271869 86 - . . scaffold794 GLEAN mRNA 271227 271646 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX DNA_TcMar-Fot1 271095 271646 166 - . . scaffold794 GLEAN mRNA 281467 281667 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy 281467 281667 26 + . . scaffold794 GLEAN mRNA 281424 281468 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy 281424 281468 22 + . . scaffold794 GLEAN mRNA 281604 282245 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy 281604 282245 122 + . . scaffold794 GLEAN mRNA 281021 281218 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy 281021 281218 168 + . . scaffold794 GLEAN mRNA 281601 282110 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy 281601 282110 280 + . . scaffold794 GLEAN mRNA 280988 281248 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy 280988 281248 80 + . . scaffold794 GLEAN mRNA 281499 282110 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy 281499 282110 83 + . . scaffold794 GLEAN mRNA 280858 281007 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy-Cigr 280858 281007 116 + . . scaffold794 GLEAN mRNA 282134 282292 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy-Cigr 282134 282292 33 + . . scaffold794 GLEAN mRNA 280819 281007 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy 280819 281007 44 + . . scaffold794 GLEAN mRNA 280600 280662 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX LTR_Gypsy 280600 280662 23 + . . scaffold794 GLEAN mRNA 309536 310363 0.696321 - . ID=CGI_10017155; scaffold794 TRF Tandem_Repeat 309536 310363 1052 + . . scaffold794 GLEAN mRNA 316954 317166 0.696321 - . ID=CGI_10017155; scaffold794 TRF Tandem_Repeat 316954 317166 96 + . . scaffold794 GLEAN mRNA 317059 317174 0.696321 - . ID=CGI_10017155; scaffold794 TRF Tandem_Repeat 317059 317174 89 + . . scaffold794 GLEAN mRNA 316954 317165 0.696321 - . ID=CGI_10017155; scaffold794 TRF Tandem_Repeat 316954 317165 162 + . . scaffold794 GLEAN mRNA 317235 318629 0.696321 - . ID=CGI_10017155; scaffold794 WUBlastX LINE_L1-Tx1 317235 318629 449 - . . scaffold794 GLEAN mRNA 318141 318902 0.696321 - . ID=CGI_10017155; scaffold794 WUBlastX LINE_RTE-BovB 318141 318902 66 - . . scaffold794 GLEAN mRNA 324724 324778 0.63388 - . ID=CGI_10017156; scaffold794 TRF Tandem_Repeat 324724 324778 58 + . . scaffold794 GLEAN mRNA 381871 381946 0.796099 - . ID=CGI_10017158; scaffold794 TRF Tandem_Repeat 381871 381946 134 + . . scaffold794 GLEAN mRNA 383156 383200 0.796099 - . ID=CGI_10017158; scaffold794 TRF Tandem_Repeat 383156 383200 90 + . . scaffold794 GLEAN mRNA 383616 383662 0.796099 - . ID=CGI_10017158; scaffold794 TRF Tandem_Repeat 383616 383662 94 + . . scaffold794 GLEAN mRNA 396977 397045 0.796099 - . ID=CGI_10017158; scaffold794 TRF Tandem_Repeat 396977 397045 122 + . . scaffold794 GLEAN mRNA 400046 400101 0.796099 - . ID=CGI_10017158; scaffold794 TRF Tandem_Repeat 400046 400101 112 + . . scaffold794 GLEAN mRNA 393780 394775 0.796099 - . ID=CGI_10017158; scaffold794 WUBlastX DNA_TcMar-Fot1 393780 394775 340 - . . scaffold794 GLEAN mRNA 394813 395082 0.796099 - . ID=CGI_10017158; scaffold794 WUBlastX DNA_TcMar-Fot1 394813 395082 56 - . . scaffold794 GLEAN mRNA 394816 394971 0.796099 - . ID=CGI_10017158; scaffold794 WUBlastX DNA_TcMar-Fot1 394816 394971 75 - . . scaffold794 GLEAN mRNA 394801 394872 0.796099 - . ID=CGI_10017158; scaffold794 WUBlastX DNA_TcMar-Fot1 394801 394872 36 - . . scaffold794 GLEAN mRNA 393426 394751 0.796099 - . ID=CGI_10017158; scaffold794 WUBlastX DNA_TcMar-Fot1 393426 394751 327 - . . scaffold794 GLEAN mRNA 417811 417850 0.796099 - . ID=CGI_10017158; scaffold794 TRF Tandem_Repeat 417811 417850 53 + . . scaffold794 GLEAN mRNA 471601 471950 0.784908 - . ID=CGI_10017160; scaffold794 TRF Tandem_Repeat 471601 471950 500 + . . scaffold794 GLEAN mRNA 471601 471950 0.784908 - . ID=CGI_10017160; scaffold794 TRF Tandem_Repeat 471601 471950 538 + . . scaffold794 GLEAN mRNA 474120 474156 0.784908 - . ID=CGI_10017160; scaffold794 TRF Tandem_Repeat 474120 474156 74 + . . scaffold977 GLEAN mRNA 87805 87841 0.443306 + . ID=CGI_10017161; scaffold977 TRF Tandem_Repeat 87805 87841 74 + . . scaffold977 GLEAN mRNA 87841 87883 0.443306 + . ID=CGI_10017161; scaffold977 TRF Tandem_Repeat 87841 87883 59 + . . scaffold977 GLEAN mRNA 97634 98400 0.443306 + . ID=CGI_10017161; scaffold977 TRF Tandem_Repeat 97634 98400 896 + . . scaffold977 GLEAN mRNA 149598 151587 0.562252 - . ID=CGI_10017163; scaffold977 TRF Tandem_Repeat 149598 151587 3665 + . . scaffold977 GLEAN mRNA 156277 156516 0.562252 - . ID=CGI_10017163; scaffold977 WUBlastX LINE_CR1-L2 156277 156516 40 + . . scaffold977 GLEAN mRNA 165610 166335 0.562252 - . ID=CGI_10017163; scaffold977 WUBlastX DNA_hAT 165610 166335 56 + . . scaffold977 GLEAN mRNA 165664 166140 0.562252 - . ID=CGI_10017163; scaffold977 WUBlastX DNA_hAT 165664 166140 150 + . . scaffold977 GLEAN mRNA 164539 165288 0.562252 - . ID=CGI_10017163; scaffold977 WUBlastX DNA_hAT 164539 165288 372 + . . scaffold977 GLEAN mRNA 165610 166335 1 + . ID=CGI_10017164; scaffold977 WUBlastX DNA_hAT 165610 166335 56 + . . scaffold977 GLEAN mRNA 165664 166140 1 + . ID=CGI_10017164; scaffold977 WUBlastX DNA_hAT 165664 166140 150 + . . scaffold977 GLEAN mRNA 164557 165288 1 + . ID=CGI_10017164; scaffold977 WUBlastX DNA_hAT 164539 165288 372 + . . scaffold977 GLEAN mRNA 185090 186214 0.998399 - . ID=CGI_10017167; scaffold977 TRF Tandem_Repeat 185090 186214 1541 + . . scaffold977 GLEAN mRNA 218168 218322 0.380603 - . ID=CGI_10017170; scaffold977 TRF Tandem_Repeat 218168 218322 86 + . . scaffold977 GLEAN mRNA 218920 218977 0.380603 - . ID=CGI_10017170; scaffold977 TRF Tandem_Repeat 218920 218977 80 + . . scaffold977 GLEAN mRNA 219912 220009 0.380603 - . ID=CGI_10017170; scaffold977 TRF Tandem_Repeat 219912 220009 92 + . . scaffold977 GLEAN mRNA 236842 236895 0.380603 - . ID=CGI_10017170; scaffold977 TRF Tandem_Repeat 236842 236895 108 + . . scaffold977 GLEAN mRNA 404961 406642 0.556509 + . ID=CGI_10017171; scaffold977 TRF Tandem_Repeat 404961 406642 2486 + . . scaffold977 GLEAN mRNA 405232 406642 0.556509 + . ID=CGI_10017171; scaffold977 TRF Tandem_Repeat 405232 406642 1980 + . . scaffold977 GLEAN mRNA 410276 411796 0.556509 + . ID=CGI_10017171; scaffold977 TRF Tandem_Repeat 410276 411796 1790 + . . scaffold977 GLEAN mRNA 424056 424102 1 + . ID=CGI_10017172; scaffold977 TRF Tandem_Repeat 424056 424102 58 + . . scaffold977 GLEAN mRNA 465443 466373 0.777737 + . ID=CGI_10017174; scaffold977 TRF Tandem_Repeat 465443 466373 1043 + . . scaffold977 GLEAN mRNA 465443 466373 0.777737 + . ID=CGI_10017174; scaffold977 TRF Tandem_Repeat 465443 466373 1043 + . . scaffold977 GLEAN mRNA 468580 469149 0.777737 + . ID=CGI_10017174; scaffold977 TRF Tandem_Repeat 468580 469149 510 + . . scaffold977 GLEAN mRNA 469729 469817 0.777737 + . ID=CGI_10017174; scaffold977 TRF Tandem_Repeat 469729 469817 160 + . . scaffold977 GLEAN mRNA 470336 470695 0.777737 + . ID=CGI_10017174; scaffold977 TRF Tandem_Repeat 470336 470695 245 + . . scaffold977 GLEAN mRNA 471159 471839 0.777737 + . ID=CGI_10017174; scaffold977 TRF Tandem_Repeat 471159 471839 425 + . . scaffold977 GLEAN mRNA 471378 471839 0.777737 + . ID=CGI_10017174; scaffold977 TRF Tandem_Repeat 471378 471839 298 + . . scaffold977 GLEAN mRNA 471544 471772 0.777737 + . ID=CGI_10017174; scaffold977 TRF Tandem_Repeat 471544 471772 146 + . . scaffold977 GLEAN mRNA 472525 472944 0.777737 + . ID=CGI_10017174; scaffold977 TRF Tandem_Repeat 472525 472944 619 + . . scaffold977 GLEAN mRNA 474441 474830 0.777737 + . ID=CGI_10017174; scaffold977 TRF Tandem_Repeat 474441 474830 428 + . . scaffold977 GLEAN mRNA 475645 476277 0.777737 + . ID=CGI_10017174; scaffold977 TRF Tandem_Repeat 475645 476277 434 + . . scaffold977 GLEAN mRNA 477380 477467 0.925116 - . ID=CGI_10017175; scaffold977 TRF Tandem_Repeat 477380 477467 167 + . . scaffold977 GLEAN mRNA 479867 479967 0.993583 - . ID=CGI_10017176; scaffold977 TRF Tandem_Repeat 479867 479967 96 + . . scaffold977 GLEAN mRNA 482634 482818 0.993583 - . ID=CGI_10017176; scaffold977 TRF Tandem_Repeat 482634 482818 325 + . . scaffold977 GLEAN mRNA 484265 484482 0.993583 - . ID=CGI_10017176; scaffold977 TRF Tandem_Repeat 484265 484482 373 + . . scaffold977 GLEAN mRNA 486288 486707 0.993583 - . ID=CGI_10017176; scaffold977 TRF Tandem_Repeat 486288 486707 287 + . . scaffold977 GLEAN mRNA 486288 487506 0.993583 - . ID=CGI_10017176; scaffold977 TRF Tandem_Repeat 486288 487506 811 + . . scaffold977 GLEAN mRNA 486763 487509 0.993583 - . ID=CGI_10017176; scaffold977 TRF Tandem_Repeat 486763 487509 1106 + . . scaffold977 GLEAN mRNA 486850 486973 0.993583 - . ID=CGI_10017176; scaffold977 TRF Tandem_Repeat 486850 486973 65 + . . scaffold789 GLEAN mRNA 11973 11998 0.725152 - . ID=CGI_10017177; scaffold789 TRF Tandem_Repeat 11973 11998 52 + . . scaffold789 GLEAN mRNA 36571 36608 0.725152 - . ID=CGI_10017177; scaffold789 TRF Tandem_Repeat 36571 36608 58 + . . scaffold789 GLEAN mRNA 70758 70889 0.499999 + . ID=CGI_10017180; scaffold789 WUBlastX DNA_hAT 70758 70889 27 + . . scaffold789 GLEAN mRNA 71273 72898 0.499999 + . ID=CGI_10017180; scaffold789 WUBlastX DNA_hAT 71273 72898 404 + . . scaffold789 GLEAN mRNA 95750 96331 0.642884 - . ID=CGI_10017181; scaffold789 WUBlastX LINE_R2-Hero 95750 96331 139 + . . scaffold789 GLEAN mRNA 96646 96738 0.642884 - . ID=CGI_10017181; scaffold789 WUBlastX LINE_R2-Hero 96646 96738 24 + . . scaffold789 GLEAN mRNA 106965 107018 1 - . ID=CGI_10017184; scaffold789 TRF Tandem_Repeat 106965 107018 101 + . . scaffold789 GLEAN mRNA 247982 248037 1 - . ID=CGI_10017199; scaffold789 TRF Tandem_Repeat 247982 248037 103 + . . scaffold789 GLEAN mRNA 249826 249868 1 - . ID=CGI_10017199; scaffold789 TRF Tandem_Repeat 249826 249868 50 + . . scaffold789 GLEAN mRNA 286789 287106 0.999942 + . ID=CGI_10017200; scaffold789 TRF Tandem_Repeat 286789 287106 413 + . . scaffold789 GLEAN mRNA 286777 287106 0.999942 + . ID=CGI_10017200; scaffold789 TRF Tandem_Repeat 286777 287106 294 + . . scaffold789 GLEAN mRNA 286959 287106 0.999942 + . ID=CGI_10017200; scaffold789 TRF Tandem_Repeat 286959 287106 170 + . . scaffold789 GLEAN mRNA 288363 288575 0.999942 + . ID=CGI_10017200; scaffold789 TRF Tandem_Repeat 288363 288575 275 + . . scaffold789 GLEAN mRNA 323482 323829 0.597754 + . ID=CGI_10017201; scaffold789 WUBlastX LTR_Gypsy 323482 323829 126 + . . scaffold789 GLEAN mRNA 322330 322752 0.597754 + . ID=CGI_10017201; scaffold789 WUBlastX LTR_Gypsy 322330 322752 46 + . . scaffold789 GLEAN mRNA 323617 323877 0.597754 + . ID=CGI_10017201; scaffold789 WUBlastX LTR_Gypsy 323617 323877 155 + . . scaffold789 GLEAN mRNA 322510 322749 0.597754 + . ID=CGI_10017201; scaffold789 WUBlastX LTR_Gypsy 322510 322749 46 + . . scaffold789 GLEAN mRNA 323620 323952 0.597754 + . ID=CGI_10017201; scaffold789 WUBlastX LTR_Gypsy 323620 323952 83 + . . scaffold789 GLEAN mRNA 323626 324021 0.597754 + . ID=CGI_10017201; scaffold789 WUBlastX LTR_Gypsy 323626 324021 68 + . . scaffold789 GLEAN mRNA 336707 336749 0.972223 + . ID=CGI_10017202; scaffold789 TRF Tandem_Repeat 336707 336749 86 + . . scaffold789 GLEAN mRNA 453845 453892 1 + . ID=CGI_10017205; scaffold789 WUBlastX LINE_L1 453845 453892 21 + . . scaffold789 GLEAN mRNA 451402 452883 1 + . ID=CGI_10017205; scaffold789 WUBlastX LINE_CR1 451402 452883 625 + . . scaffold789 GLEAN mRNA 452887 453750 1 + . ID=CGI_10017205; scaffold789 WUBlastX LINE_CR1 452887 453750 576 + . . scaffold789 GLEAN mRNA 451687 452877 1 + . ID=CGI_10017205; scaffold789 WUBlastX LINE_CR1 451687 452877 645 + . . scaffold789 GLEAN mRNA 467618 467645 1 - . ID=CGI_10017208; scaffold789 TRF Tandem_Repeat 467618 467645 56 + . . scaffold789 GLEAN mRNA 467660 467712 1 - . ID=CGI_10017208; scaffold789 TRF Tandem_Repeat 467660 467712 79 + . . scaffold789 GLEAN mRNA 475312 475347 0.996431 - . ID=CGI_10017210; scaffold789 TRF Tandem_Repeat 475312 475347 72 + . . scaffold248 GLEAN mRNA 65548 66189 0.999109 - . ID=CGI_10017218; scaffold248 TRF Tandem_Repeat 65548 66189 735 + . . scaffold248 GLEAN mRNA 65548 66189 0.999109 - . ID=CGI_10017218; scaffold248 TRF Tandem_Repeat 65548 66189 748 + . . scaffold248 GLEAN mRNA 75097 75135 0.999109 - . ID=CGI_10017218; scaffold248 TRF Tandem_Repeat 75097 75135 78 + . . scaffold248 GLEAN mRNA 89726 90397 0.53738 + . ID=CGI_10017220; scaffold248 TRF Tandem_Repeat 89726 90397 216 + . . scaffold248 GLEAN mRNA 89885 90401 0.53738 + . ID=CGI_10017220; scaffold248 TRF Tandem_Repeat 89885 90401 591 + . . scaffold248 GLEAN mRNA 91733 91947 0.53738 + . ID=CGI_10017220; scaffold248 TRF Tandem_Repeat 91733 91947 394 + . . scaffold248 GLEAN mRNA 96474 97220 0.53738 + . ID=CGI_10017220; scaffold248 TRF Tandem_Repeat 96474 97220 399 + . . scaffold248 GLEAN mRNA 96466 97200 0.53738 + . ID=CGI_10017220; scaffold248 TRF Tandem_Repeat 96466 97200 551 + . . scaffold248 GLEAN mRNA 96483 97220 0.53738 + . ID=CGI_10017220; scaffold248 TRF Tandem_Repeat 96483 97220 493 + . . scaffold248 GLEAN mRNA 86227 86535 0.53738 + . ID=CGI_10017220; scaffold248 WUBlastX LTR_Pao 86227 86535 230 - . . scaffold248 GLEAN mRNA 101345 101708 0.53738 + . ID=CGI_10017220; scaffold248 TRF Tandem_Repeat 101345 101708 577 + . . scaffold248 GLEAN mRNA 103065 103260 0.53738 + . ID=CGI_10017220; scaffold248 TRF Tandem_Repeat 103065 103260 392 + . . scaffold248 GLEAN mRNA 106016 107118 0.53738 + . ID=CGI_10017220; scaffold248 TRF Tandem_Repeat 106016 107118 1970 + . . scaffold248 GLEAN mRNA 107863 107908 0.53738 + . ID=CGI_10017220; scaffold248 TRF Tandem_Repeat 107863 107908 58 + . . scaffold248 GLEAN mRNA 108078 109438 0.53738 + . ID=CGI_10017220; scaffold248 TRF Tandem_Repeat 108078 109438 1902 + . . scaffold248 GLEAN mRNA 119165 119261 0.999998 - . ID=CGI_10017221; scaffold248 TRF Tandem_Repeat 119165 119261 88 + . . scaffold248 GLEAN mRNA 119165 119270 0.999998 - . ID=CGI_10017221; scaffold248 TRF Tandem_Repeat 119165 119270 110 + . . scaffold248 GLEAN mRNA 119504 119557 0.999998 - . ID=CGI_10017221; scaffold248 TRF Tandem_Repeat 119504 119557 108 + . . scaffold248 GLEAN mRNA 119611 119642 0.999998 - . ID=CGI_10017221; scaffold248 TRF Tandem_Repeat 119611 119642 64 + . . scaffold248 GLEAN mRNA 120839 120889 0.999998 - . ID=CGI_10017221; scaffold248 TRF Tandem_Repeat 120839 120889 59 + . . scaffold248 GLEAN mRNA 208767 209102 0.989237 + . ID=CGI_10017226; scaffold248 TRF Tandem_Repeat 208767 209102 439 + . . scaffold248 GLEAN mRNA 209267 209508 0.989237 + . ID=CGI_10017226; scaffold248 TRF Tandem_Repeat 209267 209508 226 + . . scaffold248 GLEAN mRNA 217748 218214 0.999572 - . ID=CGI_10017227; scaffold248 TRF Tandem_Repeat 217748 218214 683 + . . scaffold248 GLEAN mRNA 218063 218144 0.999572 - . ID=CGI_10017227; scaffold248 TRF Tandem_Repeat 218063 218144 50 + . . scaffold248 GLEAN mRNA 228430 228601 0.999386 - . ID=CGI_10017228; scaffold248 TRF Tandem_Repeat 228430 228601 222 + . . scaffold248 GLEAN mRNA 228568 228818 0.999386 - . ID=CGI_10017228; scaffold248 TRF Tandem_Repeat 228568 228818 94 + . . scaffold248 GLEAN mRNA 228827 229105 0.999386 - . ID=CGI_10017228; scaffold248 TRF Tandem_Repeat 228827 229105 241 + . . scaffold248 GLEAN mRNA 230157 230684 0.999386 - . ID=CGI_10017228; scaffold248 TRF Tandem_Repeat 230157 230684 828 + . . scaffold248 GLEAN mRNA 230743 231073 0.999386 - . ID=CGI_10017228; scaffold248 TRF Tandem_Repeat 230743 231073 113 + . . scaffold248 GLEAN mRNA 231928 231986 0.999386 - . ID=CGI_10017228; scaffold248 TRF Tandem_Repeat 231928 231986 102 + . . scaffold248 GLEAN mRNA 236127 236177 0.999386 - . ID=CGI_10017228; scaffold248 TRF Tandem_Repeat 236127 236177 102 + . . scaffold248 GLEAN mRNA 243884 244271 0.9896 - . ID=CGI_10017229; scaffold248 TRF Tandem_Repeat 243884 244271 487 + . . scaffold248 GLEAN mRNA 245395 245789 0.9896 - . ID=CGI_10017229; scaffold248 TRF Tandem_Repeat 245395 245789 637 + . . scaffold248 GLEAN mRNA 245395 245791 0.9896 - . ID=CGI_10017229; scaffold248 TRF Tandem_Repeat 245395 245791 731 + . . scaffold248 GLEAN mRNA 295762 295890 0.999999 - . ID=CGI_10017233; scaffold248 TRF Tandem_Repeat 295762 295890 133 + . . scaffold248 GLEAN mRNA 483327 484067 0.965913 + . ID=CGI_10017238; scaffold248 WUBlastX LTR_Pao 483327 484067 49 + . . scaffold248 GLEAN mRNA 483654 484151 0.965913 + . ID=CGI_10017238; scaffold248 WUBlastX LTR_Pao 483654 484151 25 + . . scaffold1061 GLEAN mRNA 72148 72186 0.999996 - . ID=CGI_10017241; scaffold1061 WUBlastX DNA_Kolobok-Hyd 72148 72186 24 - . . scaffold1061 GLEAN mRNA 139064 139119 0.381376 - . ID=CGI_10017245; scaffold1061 TRF Tandem_Repeat 139064 139119 112 + . . scaffold1061 GLEAN mRNA 141887 141963 0.381376 - . ID=CGI_10017245; scaffold1061 TRF Tandem_Repeat 141887 141963 147 + . . scaffold1061 GLEAN mRNA 196736 196980 0.999998 - . ID=CGI_10017247; scaffold1061 TRF Tandem_Repeat 196736 196980 113 + . . scaffold1061 GLEAN mRNA 197035 197442 0.999998 - . ID=CGI_10017247; scaffold1061 TRF Tandem_Repeat 197035 197442 400 + . . scaffold1061 GLEAN mRNA 198358 198406 0.999998 - . ID=CGI_10017247; scaffold1061 TRF Tandem_Repeat 198358 198406 98 + . . scaffold1061 GLEAN mRNA 199785 199818 0.999998 - . ID=CGI_10017247; scaffold1061 TRF Tandem_Repeat 199785 199818 68 + . . scaffold1061 GLEAN mRNA 226598 226732 0.999351 - . ID=CGI_10017248; scaffold1061 WUBlastX LTR_Gypsy 226598 226732 22 - . . scaffold1061 GLEAN mRNA 237611 237678 1 - . ID=CGI_10017250; scaffold1061 TRF Tandem_Repeat 237611 237678 57 + . . scaffold1061 GLEAN mRNA 245156 245219 0.85922 + . ID=CGI_10017251; scaffold1061 TRF Tandem_Repeat 245156 245219 128 + . . scaffold1061 GLEAN mRNA 252992 253768 0.85922 + . ID=CGI_10017251; scaffold1061 WUBlastX LTR_Caulimoviru 252992 253768 34 - . . scaffold1061 GLEAN mRNA 267757 267809 0.85922 + . ID=CGI_10017251; scaffold1061 TRF Tandem_Repeat 267757 267809 79 + . . scaffold1061 GLEAN mRNA 273666 274782 0.85922 + . ID=CGI_10017251; scaffold1061 TRF Tandem_Repeat 273666 274782 1483 + . . scaffold1061 GLEAN mRNA 252992 253768 0.757948 - . ID=CGI_10017252; scaffold1061 WUBlastX LTR_Caulimoviru 252992 253768 34 - . . scaffold1061 GLEAN mRNA 313530 313575 0.999676 - . ID=CGI_10017253; scaffold1061 TRF Tandem_Repeat 313530 313575 92 + . . scaffold1061 GLEAN mRNA 313608 313663 0.999676 - . ID=CGI_10017253; scaffold1061 TRF Tandem_Repeat 313608 313663 60 + . . scaffold1061 GLEAN mRNA 313608 313665 0.999676 - . ID=CGI_10017253; scaffold1061 TRF Tandem_Repeat 313608 313665 54 + . . scaffold1061 GLEAN mRNA 330194 330237 0.999676 - . ID=CGI_10017253; scaffold1061 TRF Tandem_Repeat 330194 330237 88 + . . scaffold1061 GLEAN mRNA 333824 333877 0.999676 - . ID=CGI_10017253; scaffold1061 TRF Tandem_Repeat 333824 333877 74 + . . scaffold1061 GLEAN mRNA 334013 334048 0.999676 - . ID=CGI_10017253; scaffold1061 TRF Tandem_Repeat 334013 334048 72 + . . scaffold1061 GLEAN mRNA 337542 337591 0.999676 - . ID=CGI_10017253; scaffold1061 TRF Tandem_Repeat 337542 337591 100 + . . scaffold1061 GLEAN mRNA 338329 338363 0.999676 - . ID=CGI_10017253; scaffold1061 TRF Tandem_Repeat 338329 338363 70 + . . scaffold1061 GLEAN mRNA 352586 352646 0.999183 + . ID=CGI_10017254; scaffold1061 TRF Tandem_Repeat 352586 352646 122 + . . scaffold1061 GLEAN mRNA 364200 364245 0.999183 + . ID=CGI_10017254; scaffold1061 TRF Tandem_Repeat 364200 364245 92 + . . scaffold1061 GLEAN mRNA 391859 391896 0.990978 - . ID=CGI_10017255; scaffold1061 TRF Tandem_Repeat 391859 391896 51 + . . scaffold1061 GLEAN mRNA 472830 472980 0.575444 + . ID=CGI_10017259; scaffold1061 TRF Tandem_Repeat 472830 472980 241 + . . scaffold1061 GLEAN mRNA 491778 491826 1 - . ID=CGI_10017261; scaffold1061 TRF Tandem_Repeat 491778 491826 98 + . . scaffold63 GLEAN mRNA 71689 71733 0.651135 + . ID=CGI_10017267; scaffold63 TRF Tandem_Repeat 71689 71733 90 + . . scaffold63 GLEAN mRNA 91919 91976 0.999961 - . ID=CGI_10017270; scaffold63 TRF Tandem_Repeat 91919 91976 109 + . . scaffold63 GLEAN mRNA 142058 142096 0.999839 + . ID=CGI_10017272; scaffold63 TRF Tandem_Repeat 142058 142096 62 + . . scaffold63 GLEAN mRNA 143541 144581 0.999839 + . ID=CGI_10017272; scaffold63 WUBlastX DNA_TcMar-Tc1 143541 144581 202 + . . scaffold63 GLEAN mRNA 166754 166801 0.999839 + . ID=CGI_10017272; scaffold63 TRF Tandem_Repeat 166754 166801 96 + . . scaffold63 GLEAN mRNA 166754 166801 1 - . ID=CGI_10017273; scaffold63 TRF Tandem_Repeat 166754 166801 96 + . . scaffold63 GLEAN mRNA 169835 169893 1 - . ID=CGI_10017273; scaffold63 TRF Tandem_Repeat 169835 169893 66 + . . scaffold63 GLEAN mRNA 169833 169893 1 - . ID=CGI_10017273; scaffold63 TRF Tandem_Repeat 169833 169893 88 + . . scaffold63 GLEAN mRNA 198335 198377 0.8139 - . ID=CGI_10017274; scaffold63 TRF Tandem_Repeat 198335 198377 50 + . . scaffold63 GLEAN mRNA 200982 201023 0.8139 - . ID=CGI_10017274; scaffold63 TRF Tandem_Repeat 200982 201023 84 + . . scaffold63 GLEAN mRNA 202222 202246 0.8139 - . ID=CGI_10017274; scaffold63 TRF Tandem_Repeat 202222 202246 50 + . . scaffold63 GLEAN mRNA 202841 202906 0.8139 - . ID=CGI_10017274; scaffold63 TRF Tandem_Repeat 202841 202906 105 + . . scaffold63 GLEAN mRNA 203666 203728 0.8139 - . ID=CGI_10017274; scaffold63 TRF Tandem_Repeat 203666 203728 119 + . . scaffold63 GLEAN mRNA 237412 237445 0.843686 + . ID=CGI_10017275; scaffold63 TRF Tandem_Repeat 237412 237445 59 + . . scaffold63 GLEAN mRNA 234564 234899 0.843686 + . ID=CGI_10017275; scaffold63 WUBlastX LINE_L1 234564 234899 28 - . . scaffold63 GLEAN mRNA 361983 362020 0.79116 + . ID=CGI_10017279; scaffold63 TRF Tandem_Repeat 361983 362020 58 + . . scaffold63 GLEAN mRNA 362022 362048 0.79116 + . ID=CGI_10017279; scaffold63 TRF Tandem_Repeat 362022 362048 54 + . . scaffold63 GLEAN mRNA 366429 366497 0.79116 + . ID=CGI_10017279; scaffold63 TRF Tandem_Repeat 366429 366497 122 + . . scaffold63 GLEAN mRNA 406823 406994 1 - . ID=CGI_10017281; scaffold63 TRF Tandem_Repeat 406823 406994 238 + . . scaffold63 GLEAN mRNA 412580 412624 1 - . ID=CGI_10017281; scaffold63 TRF Tandem_Repeat 412580 412624 51 + . . scaffold63 GLEAN mRNA 413725 413774 1 - . ID=CGI_10017281; scaffold63 TRF Tandem_Repeat 413725 413774 100 + . . scaffold63 GLEAN mRNA 419456 419698 1 - . ID=CGI_10017281; scaffold63 TRF Tandem_Repeat 419456 419698 279 + . . scaffold63 GLEAN mRNA 419878 419909 1 - . ID=CGI_10017281; scaffold63 TRF Tandem_Repeat 419878 419909 57 + . . scaffold63 GLEAN mRNA 420104 420178 1 - . ID=CGI_10017281; scaffold63 TRF Tandem_Repeat 420104 420178 143 + . . scaffold63 GLEAN mRNA 415930 416049 1 - . ID=CGI_10017281; scaffold63 WUBlastX DNA_En-Spm 415930 416049 49 + . . scaffold63 GLEAN mRNA 417499 418320 1 - . ID=CGI_10017281; scaffold63 WUBlastX DNA_En-Spm 417499 418320 195 + . . scaffold63 GLEAN mRNA 415282 415608 1 - . ID=CGI_10017281; scaffold63 WUBlastX DNA_En-Spm 415282 415608 79 + . . scaffold63 GLEAN mRNA 417157 418191 1 - . ID=CGI_10017281; scaffold63 WUBlastX DNA_En-Spm 417157 418191 301 + . . scaffold63 GLEAN mRNA 417322 418569 1 - . ID=CGI_10017281; scaffold63 WUBlastX DNA_En-Spm 417322 418569 169 + . . scaffold63 GLEAN mRNA 415228 415536 1 - . ID=CGI_10017281; scaffold63 WUBlastX DNA_En-Spm 415228 415536 43 + . . scaffold63 GLEAN mRNA 418402 418569 0.634433 + . ID=CGI_10017282; scaffold63 WUBlastX DNA_En-Spm 417322 418569 169 + . . scaffold63 GLEAN mRNA 450595 450819 1 + . ID=CGI_10017284; scaffold63 WUBlastX LINE_CR1-L2 450595 450819 72 - . . scaffold1350 GLEAN mRNA 37817 37867 0.49982 - . ID=CGI_10017291; scaffold1350 TRF Tandem_Repeat 37817 37867 102 + . . scaffold1350 GLEAN mRNA 39732 40478 0.49982 - . ID=CGI_10017291; scaffold1350 TRF Tandem_Repeat 39732 40478 715 + . . scaffold1350 GLEAN mRNA 34597 34636 0.49982 - . ID=CGI_10017291; scaffold1350 WUBlastX LTR_Gypsy 34118 34636 44 + . . scaffold1350 GLEAN mRNA 49985 50015 0.624435 - . ID=CGI_10017292; scaffold1350 TRF Tandem_Repeat 49985 50015 62 + . . scaffold1350 GLEAN mRNA 53466 54195 0.624435 - . ID=CGI_10017292; scaffold1350 TRF Tandem_Repeat 53466 54195 431 + . . scaffold1350 GLEAN mRNA 53466 54195 0.624435 - . ID=CGI_10017292; scaffold1350 TRF Tandem_Repeat 53466 54195 467 + . . scaffold1350 GLEAN mRNA 53474 54197 0.624435 - . ID=CGI_10017292; scaffold1350 TRF Tandem_Repeat 53474 54197 372 + . . scaffold1350 GLEAN mRNA 95413 95507 0.694726 - . ID=CGI_10017297; scaffold1350 TRF Tandem_Repeat 95413 95507 190 + . . scaffold1350 GLEAN mRNA 110016 110396 0.694726 - . ID=CGI_10017297; scaffold1350 WUBlastX LTR_Ngaro 110016 110396 45 - . . scaffold1350 GLEAN mRNA 109950 110333 0.694726 - . ID=CGI_10017297; scaffold1350 WUBlastX LTR_Ngaro 109950 110333 22 - . . scaffold1350 GLEAN mRNA 109607 109831 0.694726 - . ID=CGI_10017297; scaffold1350 WUBlastX LTR_Ngaro 109607 109831 81 - . . scaffold1350 GLEAN mRNA 119829 120107 0.694726 - . ID=CGI_10017297; scaffold1350 WUBlastX LTR_Gypsy 119829 120107 63 + . . scaffold1350 GLEAN mRNA 119245 119892 0.694726 - . ID=CGI_10017297; scaffold1350 WUBlastX LTR_Gypsy 119245 119892 556 + . . scaffold1350 GLEAN mRNA 119254 120060 0.694726 - . ID=CGI_10017297; scaffold1350 WUBlastX LTR_Gypsy 119254 120060 343 + . . scaffold1350 GLEAN mRNA 124085 124410 0.68864 + . ID=CGI_10017298; scaffold1350 TRF Tandem_Repeat 124085 124410 426 + . . scaffold1350 GLEAN mRNA 124304 124566 0.68864 + . ID=CGI_10017298; scaffold1350 TRF Tandem_Repeat 124304 124566 156 + . . scaffold1350 GLEAN mRNA 119829 120107 0.68864 + . ID=CGI_10017298; scaffold1350 WUBlastX LTR_Gypsy 119829 120107 63 + . . scaffold1350 GLEAN mRNA 119245 119892 0.68864 + . ID=CGI_10017298; scaffold1350 WUBlastX LTR_Gypsy 119245 119892 556 + . . scaffold1350 GLEAN mRNA 119254 120060 0.68864 + . ID=CGI_10017298; scaffold1350 WUBlastX LTR_Gypsy 119254 120060 343 + . . scaffold1350 GLEAN mRNA 136861 136896 0.648527 - . ID=CGI_10017299; scaffold1350 TRF Tandem_Repeat 136861 136896 63 + . . scaffold1350 GLEAN mRNA 149035 149661 1 - . ID=CGI_10017301; scaffold1350 WUBlastX LINE_L1-Tx1 149035 149661 23 + . . scaffold1350 GLEAN mRNA 176587 177132 0.999592 - . ID=CGI_10017302; scaffold1350 WUBlastX LINE_L2 176587 177132 93 + . . scaffold1350 GLEAN mRNA 185813 185939 0.999592 - . ID=CGI_10017302; scaffold1350 TRF Tandem_Repeat 185813 185939 132 + . . scaffold1350 GLEAN mRNA 185819 185926 0.999592 - . ID=CGI_10017302; scaffold1350 TRF Tandem_Repeat 185819 185926 125 + . . scaffold1350 GLEAN mRNA 185824 185939 0.999592 - . ID=CGI_10017302; scaffold1350 TRF Tandem_Repeat 185824 185939 133 + . . scaffold1350 GLEAN mRNA 177453 181244 0.999592 - . ID=CGI_10017302; scaffold1350 WUBlastX LINE_L1-Tx1 177453 181244 1877 + . . scaffold1350 GLEAN mRNA 203271 203672 0.523236 - . ID=CGI_10017304; scaffold1350 WUBlastX LTR_Ngaro 203271 203672 170 - . . scaffold1350 GLEAN mRNA 207526 207780 0.523236 - . ID=CGI_10017304; scaffold1350 WUBlastX LINE_L1 207526 207780 65 - . . scaffold1350 GLEAN mRNA 289224 289406 1 + . ID=CGI_10017309; scaffold1350 TRF Tandem_Repeat 289224 289406 142 + . . scaffold1350 GLEAN mRNA 347283 347593 1 + . ID=CGI_10017314; scaffold1350 TRF Tandem_Repeat 347283 347593 264 + . . scaffold1350 GLEAN mRNA 347272 347554 1 + . ID=CGI_10017314; scaffold1350 TRF Tandem_Repeat 347272 347554 348 + . . scaffold1350 GLEAN mRNA 347761 347978 1 + . ID=CGI_10017314; scaffold1350 TRF Tandem_Repeat 347761 347978 223 + . . scaffold1350 GLEAN mRNA 347756 347989 1 + . ID=CGI_10017314; scaffold1350 TRF Tandem_Repeat 347756 347989 423 + . . scaffold1350 GLEAN mRNA 349382 349435 1 + . ID=CGI_10017314; scaffold1350 TRF Tandem_Repeat 349382 349435 108 + . . scaffold1350 GLEAN mRNA 385612 385671 1 + . ID=CGI_10017316; scaffold1350 TRF Tandem_Repeat 385612 385671 106 + . . scaffold1350 GLEAN mRNA 391739 391823 1 + . ID=CGI_10017316; scaffold1350 TRF Tandem_Repeat 391739 391823 161 + . . scaffold1350 GLEAN mRNA 392046 392081 1 + . ID=CGI_10017316; scaffold1350 TRF Tandem_Repeat 392046 392081 72 + . . scaffold1350 GLEAN mRNA 395210 395252 0.728523 + . ID=CGI_10017317; scaffold1350 TRF Tandem_Repeat 395210 395252 52 + . . scaffold1350 GLEAN mRNA 395367 395401 0.728523 + . ID=CGI_10017317; scaffold1350 TRF Tandem_Repeat 395367 395401 70 + . . scaffold1350 GLEAN mRNA 400863 401842 0.728523 + . ID=CGI_10017317; scaffold1350 TRF Tandem_Repeat 400863 401842 1265 + . . scaffold1350 GLEAN mRNA 407339 408471 0.728523 + . ID=CGI_10017317; scaffold1350 TRF Tandem_Repeat 407339 408471 376 + . . scaffold1350 GLEAN mRNA 407339 408471 0.728523 + . ID=CGI_10017317; scaffold1350 TRF Tandem_Repeat 407339 408471 1167 + . . scaffold1350 GLEAN mRNA 407339 408471 0.728523 + . ID=CGI_10017317; scaffold1350 TRF Tandem_Repeat 407339 408471 1200 + . . scaffold1350 GLEAN mRNA 397661 397804 0.728523 + . ID=CGI_10017317; scaffold1350 WUBlastX LINE_RTE-X 397661 397804 41 - . . scaffold1350 GLEAN mRNA 397022 397750 0.728523 + . ID=CGI_10017317; scaffold1350 WUBlastX LINE_RTE-X 397022 397750 188 - . . scaffold1350 GLEAN mRNA 398346 398513 0.728523 + . ID=CGI_10017317; scaffold1350 WUBlastX LINE_RTE-X 398346 398513 81 - . . scaffold1350 GLEAN mRNA 398385 398564 0.728523 + . ID=CGI_10017317; scaffold1350 WUBlastX LINE_CR1 398385 398564 37 - . . scaffold1350 GLEAN mRNA 397821 397940 0.728523 + . ID=CGI_10017317; scaffold1350 WUBlastX LINE_RTE-BovB 397821 397940 53 - . . scaffold1350 GLEAN mRNA 397927 398334 0.728523 + . ID=CGI_10017317; scaffold1350 WUBlastX LINE_RTE-X 397927 398334 157 - . . scaffold1350 GLEAN mRNA 398590 398688 0.728523 + . ID=CGI_10017317; scaffold1350 WUBlastX LINE_RTE-X 398590 398688 26 - . . scaffold1350 GLEAN mRNA 399909 400019 0.728523 + . ID=CGI_10017317; scaffold1350 WUBlastX LINE_L1-Tx1 399909 400019 55 - . . scaffold1350 GLEAN mRNA 400121 400549 0.728523 + . ID=CGI_10017317; scaffold1350 WUBlastX LINE_L1-Tx1 400121 400549 20 - . . scaffold1350 GLEAN mRNA 398590 398775 0.728523 + . ID=CGI_10017317; scaffold1350 WUBlastX LINE_RTE-X 398590 398775 20 - . . scaffold1350 GLEAN mRNA 396908 397780 0.728523 + . ID=CGI_10017317; scaffold1350 WUBlastX LINE_RTE-X 396908 397780 125 - . . scaffold1350 GLEAN mRNA 410389 410691 0.728523 + . ID=CGI_10017317; scaffold1350 TRF Tandem_Repeat 410389 410691 597 + . . scaffold1350 GLEAN mRNA 425624 425666 0.930348 + . ID=CGI_10017318; scaffold1350 TRF Tandem_Repeat 425624 425666 68 + . . scaffold1350 GLEAN mRNA 427245 430234 0.930348 + . ID=CGI_10017318; scaffold1350 TRF Tandem_Repeat 427245 430234 2182 + . . scaffold1350 GLEAN mRNA 451165 451542 0.450856 - . ID=CGI_10017319; scaffold1350 WUBlastX LTR_Pao 451165 451542 74 + . . scaffold1350 GLEAN mRNA 452136 456443 0.450856 - . ID=CGI_10017319; scaffold1350 WUBlastX LTR_Pao 452136 456443 2853 + . . scaffold1350 GLEAN mRNA 451563 455030 0.450856 - . ID=CGI_10017319; scaffold1350 WUBlastX LTR_Pao 451563 455030 2276 + . . scaffold1350 GLEAN mRNA 459717 460511 0.450856 - . ID=CGI_10017319; scaffold1350 TRF Tandem_Repeat 459717 460511 1527 + . . scaffold1350 GLEAN mRNA 468883 469509 0.450856 - . ID=CGI_10017319; scaffold1350 WUBlastX LTR_DIRS 468883 469509 252 + . . scaffold1350 GLEAN mRNA 469511 469639 0.450856 - . ID=CGI_10017319; scaffold1350 WUBlastX LTR_DIRS 469511 469639 87 + . . scaffold1350 GLEAN mRNA 468048 468842 0.450856 - . ID=CGI_10017319; scaffold1350 WUBlastX LTR_DIRS 468048 468842 114 + . . scaffold1350 GLEAN mRNA 470092 471486 0.450856 - . ID=CGI_10017319; scaffold1350 WUBlastX LTR_DIRS 470092 471486 746 + . . scaffold1350 GLEAN mRNA 469018 469560 0.450856 - . ID=CGI_10017319; scaffold1350 WUBlastX LTR_DIRS 469018 469560 356 + . . scaffold1350 GLEAN mRNA 471327 472238 0.450856 - . ID=CGI_10017319; scaffold1350 WUBlastX LTR_DIRS 471327 472238 520 + . . scaffold1900 GLEAN mRNA 6782 7605 1 + . ID=CGI_10017321; scaffold1900 TRF Tandem_Repeat 6782 7605 897 + . . scaffold1900 GLEAN mRNA 6782 7605 0.615282 - . ID=CGI_10017322; scaffold1900 TRF Tandem_Repeat 6782 7605 897 + . . scaffold1900 GLEAN mRNA 13713 15036 0.615282 - . ID=CGI_10017322; scaffold1900 TRF Tandem_Repeat 13713 15036 1381 + . . scaffold1900 GLEAN mRNA 22351 22458 0.723538 + . ID=CGI_10017323; scaffold1900 WUBlastX DNA_hAT 22351 22458 53 + . . scaffold1900 GLEAN mRNA 22610 22735 0.723538 + . ID=CGI_10017323; scaffold1900 WUBlastX DNA_hAT 22610 22735 49 + . . scaffold1900 GLEAN mRNA 22276 22458 0.723538 + . ID=CGI_10017323; scaffold1900 WUBlastX DNA_hAT 22276 22458 50 + . . scaffold1900 GLEAN mRNA 46859 46912 0.249831 + . ID=CGI_10017325; scaffold1900 TRF Tandem_Repeat 46859 46912 108 + . . scaffold1900 GLEAN mRNA 49249 49521 0.249831 + . ID=CGI_10017325; scaffold1900 WUBlastX DNA_Harbinger 49249 49521 160 - . . scaffold1900 GLEAN mRNA 125937 125988 0.641468 + . ID=CGI_10017329; scaffold1900 TRF Tandem_Repeat 125937 125988 104 + . . scaffold1900 GLEAN mRNA 126765 126820 0.641468 + . ID=CGI_10017329; scaffold1900 TRF Tandem_Repeat 126765 126820 112 + . . scaffold1900 GLEAN mRNA 131411 131468 0.641468 + . ID=CGI_10017329; scaffold1900 TRF Tandem_Repeat 131411 131468 91 + . . scaffold1900 GLEAN mRNA 132798 133553 0.641468 + . ID=CGI_10017329; scaffold1900 TRF Tandem_Repeat 132798 133553 1047 + . . scaffold1900 GLEAN mRNA 192681 193000 0.288241 - . ID=CGI_10017334; scaffold1900 TRF Tandem_Repeat 192681 193000 156 + . . scaffold1900 GLEAN mRNA 194633 194696 0.288241 - . ID=CGI_10017334; scaffold1900 TRF Tandem_Repeat 194633 194696 119 + . . scaffold1900 GLEAN mRNA 210887 212232 0.288241 - . ID=CGI_10017334; scaffold1900 TRF Tandem_Repeat 210887 212232 1569 + . . scaffold1900 GLEAN mRNA 212401 212452 0.288241 - . ID=CGI_10017334; scaffold1900 TRF Tandem_Repeat 212401 212452 50 + . . scaffold1900 GLEAN mRNA 215549 215580 0.288241 - . ID=CGI_10017334; scaffold1900 TRF Tandem_Repeat 215549 215580 64 + . . scaffold1900 GLEAN mRNA 222625 222704 0.728812 + . ID=CGI_10017336; scaffold1900 TRF Tandem_Repeat 222625 222704 133 + . . scaffold1900 GLEAN mRNA 222770 222825 0.728812 + . ID=CGI_10017336; scaffold1900 TRF Tandem_Repeat 222770 222825 51 + . . scaffold1900 GLEAN mRNA 225388 225457 0.728812 + . ID=CGI_10017336; scaffold1900 TRF Tandem_Repeat 225388 225457 122 + . . scaffold1900 GLEAN mRNA 270347 270381 0.999978 - . ID=CGI_10017338; scaffold1900 TRF Tandem_Repeat 270347 270381 70 + . . scaffold1900 GLEAN mRNA 270347 270381 0.999117 + . ID=CGI_10017339; scaffold1900 TRF Tandem_Repeat 270347 270381 70 + . . scaffold1900 GLEAN mRNA 279378 279521 0.999978 - . ID=CGI_10017340; scaffold1900 TRF Tandem_Repeat 279378 279521 129 + . . scaffold1900 GLEAN mRNA 279405 279611 0.999978 - . ID=CGI_10017340; scaffold1900 TRF Tandem_Repeat 279405 279611 87 + . . scaffold1900 GLEAN mRNA 281448 281991 0.990769 - . ID=CGI_10017341; scaffold1900 TRF Tandem_Repeat 281448 281991 625 + . . scaffold1900 GLEAN mRNA 281404 282014 0.990769 - . ID=CGI_10017341; scaffold1900 TRF Tandem_Repeat 281404 282014 476 + . . scaffold1900 GLEAN mRNA 299786 299846 0.43669 + . ID=CGI_10017343; scaffold1900 TRF Tandem_Repeat 299786 299846 122 + . . scaffold1900 GLEAN mRNA 306707 306747 0.43669 + . ID=CGI_10017343; scaffold1900 TRF Tandem_Repeat 306707 306747 82 + . . scaffold1900 GLEAN mRNA 316974 317950 0.43669 + . ID=CGI_10017343; scaffold1900 TRF Tandem_Repeat 316974 317950 835 + . . scaffold1900 GLEAN mRNA 338307 338386 0.875552 - . ID=CGI_10017344; scaffold1900 TRF Tandem_Repeat 338307 338386 160 + . . scaffold1900 GLEAN mRNA 391200 391724 0.999777 - . ID=CGI_10017347; scaffold1900 WUBlastX LINE_L1-Tx1 391200 391724 286 + . . scaffold1900 GLEAN mRNA 391739 393091 0.999777 - . ID=CGI_10017347; scaffold1900 WUBlastX LINE_L1-Tx1 391739 393091 233 + . . scaffold1900 GLEAN mRNA 393093 393203 0.999777 - . ID=CGI_10017347; scaffold1900 WUBlastX LINE_L1 393093 393203 24 + . . scaffold1900 GLEAN mRNA 396983 397024 0.999777 - . ID=CGI_10017347; scaffold1900 TRF Tandem_Repeat 396983 397024 50 + . . scaffold1900 GLEAN mRNA 393126 393341 0.999777 - . ID=CGI_10017347; scaffold1900 WUBlastX LINE_L1-Tx1 393126 393341 48 + . . scaffold1900 GLEAN mRNA 407729 407986 0.695611 + . ID=CGI_10017348; scaffold1900 WUBlastX LTR_Gypsy-Troyk 407441 407986 118 + . . scaffold1900 GLEAN mRNA 427749 427789 0.99999 + . ID=CGI_10017349; scaffold1900 TRF Tandem_Repeat 427749 427789 82 + . . scaffold1900 GLEAN mRNA 428493 428704 0.99999 + . ID=CGI_10017349; scaffold1900 TRF Tandem_Repeat 428493 428704 325 + . . scaffold1900 GLEAN mRNA 432425 432469 0.99999 + . ID=CGI_10017349; scaffold1900 TRF Tandem_Repeat 432425 432469 69 + . . scaffold1900 GLEAN mRNA 432587 432631 0.99999 + . ID=CGI_10017349; scaffold1900 TRF Tandem_Repeat 432587 432631 65 + . . scaffold1900 GLEAN mRNA 432733 432766 0.99999 + . ID=CGI_10017349; scaffold1900 TRF Tandem_Repeat 432733 432766 50 + . . scaffold1900 GLEAN mRNA 432732 432769 0.99999 + . ID=CGI_10017349; scaffold1900 TRF Tandem_Repeat 432732 432769 62 + . . scaffold1900 GLEAN mRNA 462151 462203 0.999982 + . ID=CGI_10017352; scaffold1900 TRF Tandem_Repeat 462151 462203 106 + . . scaffold1900 GLEAN mRNA 463684 463746 0.999982 + . ID=CGI_10017352; scaffold1900 TRF Tandem_Repeat 463684 463746 126 + . . scaffold1900 GLEAN mRNA 468054 468143 0.999982 + . ID=CGI_10017352; scaffold1900 TRF Tandem_Repeat 468054 468143 171 + . . scaffold1900 GLEAN mRNA 486070 486351 0.486453 - . ID=CGI_10017353; scaffold1900 TRF Tandem_Repeat 486070 486351 265 + . . scaffold1554 GLEAN mRNA 7376 7883 0.529783 + . ID=CGI_10017354; scaffold1554 TRF Tandem_Repeat 7376 7883 404 + . . scaffold1554 GLEAN mRNA 11938 11976 0.529783 + . ID=CGI_10017354; scaffold1554 TRF Tandem_Repeat 11938 11976 60 + . . scaffold1554 GLEAN mRNA 11942 11985 0.529783 + . ID=CGI_10017354; scaffold1554 TRF Tandem_Repeat 11942 11985 52 + . . scaffold1554 GLEAN mRNA 4700 6520 0.529783 + . ID=CGI_10017354; scaffold1554 WUBlastX LTR_Gypsy 4700 6520 1113 - . . scaffold1554 GLEAN mRNA 6254 6574 0.529783 + . ID=CGI_10017354; scaffold1554 WUBlastX LTR_Gypsy 6254 6574 38 - . . scaffold1554 GLEAN mRNA 6455 6607 0.529783 + . ID=CGI_10017354; scaffold1554 WUBlastX LTR_Gypsy 6455 6607 23 - . . scaffold1554 GLEAN mRNA 20250 20308 0.529783 + . ID=CGI_10017354; scaffold1554 TRF Tandem_Repeat 20250 20308 118 + . . scaffold1554 GLEAN mRNA 29964 30722 0.999765 - . ID=CGI_10017355; scaffold1554 TRF Tandem_Repeat 29964 30722 1167 + . . scaffold1554 GLEAN mRNA 30204 30644 0.999765 - . ID=CGI_10017355; scaffold1554 TRF Tandem_Repeat 30204 30644 98 + . . scaffold1554 GLEAN mRNA 56930 57000 0.275944 - . ID=CGI_10017356; scaffold1554 TRF Tandem_Repeat 56930 57000 142 + . . scaffold1554 GLEAN mRNA 55373 55843 0.275944 - . ID=CGI_10017356; scaffold1554 WUBlastX DNA_Kolobok-Hyd 55373 55843 44 - . . scaffold1554 GLEAN mRNA 56561 56698 0.275944 - . ID=CGI_10017356; scaffold1554 WUBlastX DNA_Kolobok-Hyd 56561 56698 30 - . . scaffold1554 GLEAN mRNA 55490 55843 0.275944 - . ID=CGI_10017356; scaffold1554 WUBlastX DNA_Kolobok-Hyd 55490 55843 49 - . . scaffold1554 GLEAN mRNA 84623 84665 0.999372 - . ID=CGI_10017358; scaffold1554 WUBlastX LINE_L2 84623 84868 34 - . . scaffold1554 GLEAN mRNA 84525 84647 0.999372 - . ID=CGI_10017358; scaffold1554 WUBlastX LINE_CR1-L2 84525 84647 41 - . . scaffold1554 GLEAN mRNA 84557 84665 0.999372 - . ID=CGI_10017358; scaffold1554 WUBlastX LINE_L2 84557 84949 22 - . . scaffold1554 GLEAN mRNA 94719 94748 0.541994 - . ID=CGI_10017359; scaffold1554 TRF Tandem_Repeat 94719 94748 60 + . . scaffold1554 GLEAN mRNA 109328 109497 0.860594 + . ID=CGI_10017360; scaffold1554 TRF Tandem_Repeat 109328 109497 202 + . . scaffold1554 GLEAN mRNA 145148 145396 0.721842 + . ID=CGI_10017362; scaffold1554 TRF Tandem_Repeat 145148 145396 171 + . . scaffold1554 GLEAN mRNA 145199 145690 0.721842 + . ID=CGI_10017362; scaffold1554 TRF Tandem_Repeat 145199 145690 305 + . . scaffold1554 GLEAN mRNA 145477 145733 0.721842 + . ID=CGI_10017362; scaffold1554 TRF Tandem_Repeat 145477 145733 187 + . . scaffold1554 GLEAN mRNA 151819 151897 1 - . ID=CGI_10017363; scaffold1554 TRF Tandem_Repeat 151819 151897 135 + . . scaffold1554 GLEAN mRNA 152672 152762 1 - . ID=CGI_10017363; scaffold1554 TRF Tandem_Repeat 152672 152762 83 + . . scaffold1554 GLEAN mRNA 240390 240533 0.999996 + . ID=CGI_10017366; scaffold1554 WUBlastX DNA_hAT 240390 240533 29 + . . scaffold1554 GLEAN mRNA 326693 326936 0.173332 - . ID=CGI_10017369; scaffold1554 TRF Tandem_Repeat 326693 326936 197 + . . scaffold1554 GLEAN mRNA 339014 339054 0.173332 - . ID=CGI_10017369; scaffold1554 TRF Tandem_Repeat 339014 339054 82 + . . scaffold1554 GLEAN mRNA 406700 406733 0.924957 + . ID=CGI_10017370; scaffold1554 TRF Tandem_Repeat 406700 406733 52 + . . scaffold1554 GLEAN mRNA 417481 417544 0.924957 + . ID=CGI_10017370; scaffold1554 TRF Tandem_Repeat 417481 417544 121 + . . scaffold1554 GLEAN mRNA 418887 419104 0.924957 + . ID=CGI_10017370; scaffold1554 TRF Tandem_Repeat 418887 419104 391 + . . scaffold1554 GLEAN mRNA 422315 422518 0.924957 + . ID=CGI_10017370; scaffold1554 TRF Tandem_Repeat 422315 422518 125 + . . scaffold1554 GLEAN mRNA 423931 423956 0.924957 + . ID=CGI_10017370; scaffold1554 TRF Tandem_Repeat 423931 423956 52 + . . scaffold1554 GLEAN mRNA 486084 486188 0.34149 + . ID=CGI_10017375; scaffold1554 WUBlastX LINE_L2 486084 486398 63 + . . scaffold1554 GLEAN mRNA 486039 486188 0.34149 + . ID=CGI_10017375; scaffold1554 WUBlastX LINE_L1 486039 486419 61 + . . scaffold1554 GLEAN mRNA 486123 486188 0.34149 + . ID=CGI_10017375; scaffold1554 WUBlastX LINE_L2 486123 486359 68 + . . scaffold751 GLEAN mRNA 8833 8866 0.698176 - . ID=CGI_10017378; scaffold751 TRF Tandem_Repeat 8833 8866 59 + . . scaffold751 GLEAN mRNA 77035 77067 0.139688 - . ID=CGI_10017381; scaffold751 TRF Tandem_Repeat 77035 77067 66 + . . scaffold751 GLEAN mRNA 95933 96994 0.999415 + . ID=CGI_10017382; scaffold751 WUBlastX DNA_IS4EU 95933 96994 363 + . . scaffold751 GLEAN mRNA 94947 95144 0.999415 + . ID=CGI_10017382; scaffold751 WUBlastX DNA_P 94947 95144 54 + . . scaffold751 GLEAN mRNA 111571 112425 0.999933 - . ID=CGI_10017384; scaffold751 TRF Tandem_Repeat 111571 112425 1071 + . . scaffold751 GLEAN mRNA 120513 120749 0.999997 + . ID=CGI_10017386; scaffold751 WUBlastX LTR_Gypsy 120513 120749 77 - . . scaffold751 GLEAN mRNA 120789 121157 0.999997 + . ID=CGI_10017386; scaffold751 WUBlastX LTR_Gypsy 120789 121157 192 - . . scaffold751 GLEAN mRNA 117476 118057 0.999997 + . ID=CGI_10017386; scaffold751 WUBlastX LTR_Gypsy 117476 118057 64 - . . scaffold751 GLEAN mRNA 119902 120330 0.999997 + . ID=CGI_10017386; scaffold751 WUBlastX LTR_Gypsy 119902 120330 240 - . . scaffold751 GLEAN mRNA 120645 121157 0.999997 + . ID=CGI_10017386; scaffold751 WUBlastX LTR_Gypsy 120645 121157 175 - . . scaffold751 GLEAN mRNA 121105 121443 0.999997 + . ID=CGI_10017386; scaffold751 WUBlastX LTR_Gypsy 121105 121443 140 - . . scaffold751 GLEAN mRNA 117476 117712 0.59015 - . ID=CGI_10017387; scaffold751 WUBlastX LTR_Gypsy 117476 118057 64 - . . scaffold751 GLEAN mRNA 155383 155913 0.999947 - . ID=CGI_10017388; scaffold751 WUBlastX DNA_TcMar-Tc1 155383 155913 43 - . . scaffold751 GLEAN mRNA 155791 156027 0.999947 - . ID=CGI_10017388; scaffold751 WUBlastX DNA_TcMar-Tc1 155791 156027 27 - . . scaffold751 GLEAN mRNA 156119 156199 0.999947 - . ID=CGI_10017388; scaffold751 WUBlastX DNA_TcMar-Tc1 156119 156199 23 - . . scaffold751 GLEAN mRNA 155647 155913 0.999947 - . ID=CGI_10017388; scaffold751 WUBlastX DNA_TcMar-Tc1 155647 155913 60 - . . scaffold751 GLEAN mRNA 246410 247060 0.327254 - . ID=CGI_10017389; scaffold751 WUBlastX LINE_RTE-X 246410 247060 68 + . . scaffold751 GLEAN mRNA 246410 246955 0.327254 - . ID=CGI_10017389; scaffold751 WUBlastX LINE_RTE-X 246410 246955 104 + . . scaffold751 GLEAN mRNA 282101 282135 0.999629 - . ID=CGI_10017394; scaffold751 TRF Tandem_Repeat 282101 282135 70 + . . scaffold751 GLEAN mRNA 306753 307884 0.999134 + . ID=CGI_10017395; scaffold751 TRF Tandem_Repeat 306753 307884 1766 + . . scaffold751 GLEAN mRNA 321810 321847 0.982371 + . ID=CGI_10017396; scaffold751 TRF Tandem_Repeat 321810 321847 76 + . . scaffold751 GLEAN mRNA 355300 355391 0.996912 + . ID=CGI_10017398; scaffold751 TRF Tandem_Repeat 355300 355391 53 + . . scaffold751 GLEAN mRNA 367713 367748 0.608405 - . ID=CGI_10017399; scaffold751 TRF Tandem_Repeat 367713 367748 54 + . . scaffold751 GLEAN mRNA 373390 373573 0.608405 - . ID=CGI_10017399; scaffold751 TRF Tandem_Repeat 373390 373573 257 + . . scaffold751 GLEAN mRNA 374855 375439 0.608405 - . ID=CGI_10017399; scaffold751 TRF Tandem_Repeat 374855 375439 808 + . . scaffold751 GLEAN mRNA 411577 411807 1 - . ID=CGI_10017403; scaffold751 WUBlastX LINE_L2 411577 411807 75 + . . scaffold751 GLEAN mRNA 411538 411768 1 - . ID=CGI_10017403; scaffold751 WUBlastX LINE_L2 411538 411768 54 + . . scaffold751 GLEAN mRNA 411625 411837 1 - . ID=CGI_10017403; scaffold751 WUBlastX LINE_L2 411625 411837 79 + . . scaffold751 GLEAN mRNA 418854 419651 0.63152 + . ID=CGI_10017404; scaffold751 TRF Tandem_Repeat 418854 419651 1166 + . . scaffold751 GLEAN mRNA 450999 451037 0.991356 - . ID=CGI_10017406; scaffold751 TRF Tandem_Repeat 450999 451037 78 + . . scaffold925 GLEAN mRNA 19617 19641 1 - . ID=CGI_10017409; scaffold925 TRF Tandem_Repeat 19617 19641 50 + . . scaffold925 GLEAN mRNA 127659 127994 0.393067 - . ID=CGI_10017412; scaffold925 WUBlastX LTR_Pao 127659 127994 52 + . . scaffold925 GLEAN mRNA 127719 128678 0.393067 - . ID=CGI_10017412; scaffold925 WUBlastX LTR_Pao 127719 128678 390 + . . scaffold925 GLEAN mRNA 128406 130037 0.393067 - . ID=CGI_10017412; scaffold925 WUBlastX LTR_Pao 128406 130037 628 + . . scaffold925 GLEAN mRNA 141622 142515 0.393067 - . ID=CGI_10017412; scaffold925 WUBlastX LTR_Gypsy 141622 142515 137 - . . scaffold925 GLEAN mRNA 140354 141217 0.393067 - . ID=CGI_10017412; scaffold925 WUBlastX LTR_DIRS 140354 141217 326 - . . scaffold925 GLEAN mRNA 141226 142380 0.393067 - . ID=CGI_10017412; scaffold925 WUBlastX LTR_DIRS 141226 142380 729 - . . scaffold925 GLEAN mRNA 140016 140459 0.393067 - . ID=CGI_10017412; scaffold925 WUBlastX LTR_DIRS 140016 140459 146 - . . scaffold925 GLEAN mRNA 142660 142752 0.393067 - . ID=CGI_10017412; scaffold925 WUBlastX LTR_Gypsy 142660 142752 22 - . . scaffold925 GLEAN mRNA 140537 141205 0.393067 - . ID=CGI_10017412; scaffold925 WUBlastX LTR_DIRS 140537 141205 390 - . . scaffold925 GLEAN mRNA 128706 131678 0.393067 - . ID=CGI_10017412; scaffold925 WUBlastX LTR_Pao 128706 131678 2481 + . . scaffold925 GLEAN mRNA 169681 170635 0.647686 - . ID=CGI_10017416; scaffold925 TRF Tandem_Repeat 169681 170635 1094 + . . scaffold925 GLEAN mRNA 169681 170635 0.647686 - . ID=CGI_10017416; scaffold925 TRF Tandem_Repeat 169681 170635 1130 + . . scaffold925 GLEAN mRNA 174741 174803 0.647686 - . ID=CGI_10017416; scaffold925 TRF Tandem_Repeat 174741 174803 126 + . . scaffold925 GLEAN mRNA 175003 175077 0.647686 - . ID=CGI_10017416; scaffold925 TRF Tandem_Repeat 175003 175077 134 + . . scaffold925 GLEAN mRNA 191014 191192 0.878781 - . ID=CGI_10017418; scaffold925 TRF Tandem_Repeat 191014 191192 137 + . . scaffold925 GLEAN mRNA 198891 199361 0.878781 - . ID=CGI_10017418; scaffold925 WUBlastX LINE_RTE-X 198891 199361 168 + . . scaffold925 GLEAN mRNA 199011 199331 0.878781 - . ID=CGI_10017418; scaffold925 WUBlastX LINE_RTE-X 199011 199331 238 + . . scaffold925 GLEAN mRNA 199569 200096 0.878781 - . ID=CGI_10017418; scaffold925 WUBlastX LINE_RTE-X 199569 200096 83 + . . scaffold925 GLEAN mRNA 198795 199334 0.878781 - . ID=CGI_10017418; scaffold925 WUBlastX LINE_L2 198795 199334 96 + . . scaffold925 GLEAN mRNA 228857 228884 0.810337 + . ID=CGI_10017420; scaffold925 TRF Tandem_Repeat 228857 228884 56 + . . scaffold925 GLEAN mRNA 225506 225646 0.810337 + . ID=CGI_10017420; scaffold925 WUBlastX LINE_L1-Tx1 225506 225646 78 + . . scaffold925 GLEAN mRNA 225639 225800 0.810337 + . ID=CGI_10017420; scaffold925 WUBlastX LINE_L1-Tx1 225639 225800 74 + . . scaffold925 GLEAN mRNA 225354 225455 0.810337 + . ID=CGI_10017420; scaffold925 WUBlastX LINE_L1-Tx1 225354 225455 45 + . . scaffold925 GLEAN mRNA 234954 235418 1 + . ID=CGI_10017421; scaffold925 WUBlastX LINE_CR1 234954 235418 117 - . . scaffold925 GLEAN mRNA 249021 250142 0.996749 - . ID=CGI_10017422; scaffold925 WUBlastX LTR_Gypsy-Cigr 249021 250142 402 - . . scaffold925 GLEAN mRNA 246439 249018 0.996749 - . ID=CGI_10017422; scaffold925 WUBlastX LTR_Gypsy-Cigr 246439 249018 1667 - . . scaffold925 GLEAN mRNA 250398 251159 0.996749 - . ID=CGI_10017422; scaffold925 WUBlastX LTR_Gypsy-Cigr 250398 251159 193 - . . scaffold925 GLEAN mRNA 249021 250439 0.996749 - . ID=CGI_10017422; scaffold925 WUBlastX LTR_Gypsy 249021 250439 207 - . . scaffold925 GLEAN mRNA 279893 279926 0.996279 - . ID=CGI_10017423; scaffold925 TRF Tandem_Repeat 279893 279926 50 + . . scaffold925 GLEAN mRNA 292010 292037 0.996279 - . ID=CGI_10017423; scaffold925 TRF Tandem_Repeat 292010 292037 56 + . . scaffold925 GLEAN mRNA 280620 280835 0.996279 - . ID=CGI_10017423; scaffold925 WUBlastX DNA_Sola 280620 280835 85 + . . scaffold925 GLEAN mRNA 281938 282513 0.996279 - . ID=CGI_10017423; scaffold925 WUBlastX DNA_Sola 281938 282513 342 + . . scaffold925 GLEAN mRNA 283613 284236 0.996279 - . ID=CGI_10017423; scaffold925 WUBlastX DNA_Sola 283613 284236 163 + . . scaffold925 GLEAN mRNA 282772 282957 0.996279 - . ID=CGI_10017423; scaffold925 WUBlastX DNA_Sola 282772 282957 76 + . . scaffold925 GLEAN mRNA 282703 282954 0.996279 - . ID=CGI_10017423; scaffold925 WUBlastX DNA_Sola 282703 282954 45 + . . scaffold925 GLEAN mRNA 297798 297827 0.996279 - . ID=CGI_10017423; scaffold925 TRF Tandem_Repeat 297798 297827 60 + . . scaffold925 GLEAN mRNA 292010 292037 0.544755 + . ID=CGI_10017424; scaffold925 TRF Tandem_Repeat 292010 292037 56 + . . scaffold925 GLEAN mRNA 297798 297827 0.544755 + . ID=CGI_10017424; scaffold925 TRF Tandem_Repeat 297798 297827 60 + . . scaffold925 GLEAN mRNA 379223 379257 0.521242 + . ID=CGI_10017426; scaffold925 TRF Tandem_Repeat 379223 379257 52 + . . scaffold925 GLEAN mRNA 379696 379781 0.521242 + . ID=CGI_10017426; scaffold925 TRF Tandem_Repeat 379696 379781 172 + . . scaffold925 GLEAN mRNA 380224 380361 0.521242 + . ID=CGI_10017426; scaffold925 WUBlastX LINE_RTE-X 380224 380361 86 + . . scaffold925 GLEAN mRNA 379884 379952 0.521242 + . ID=CGI_10017426; scaffold925 WUBlastX LINE_RTE-X 379884 379952 21 + . . scaffold925 GLEAN mRNA 380209 380379 0.521242 + . ID=CGI_10017426; scaffold925 WUBlastX LINE_RTE-X 380209 380379 61 + . . scaffold925 GLEAN mRNA 434866 434975 0.986598 + . ID=CGI_10017428; scaffold925 TRF Tandem_Repeat 434866 434975 80 + . . scaffold925 GLEAN mRNA 434866 434973 0.986598 + . ID=CGI_10017428; scaffold925 TRF Tandem_Repeat 434866 434973 92 + . . scaffold925 GLEAN mRNA 438641 438928 0.986598 + . ID=CGI_10017428; scaffold925 WUBlastX LTR_DIRS 438641 438928 171 + . . scaffold925 GLEAN mRNA 438954 439073 0.986598 + . ID=CGI_10017428; scaffold925 WUBlastX LTR_DIRS 438954 439073 44 + . . scaffold925 GLEAN mRNA 442205 442345 0.986598 + . ID=CGI_10017428; scaffold925 WUBlastX LTR_DIRS 442205 442345 28 + . . scaffold925 GLEAN mRNA 438433 438597 0.986598 + . ID=CGI_10017428; scaffold925 WUBlastX LTR_DIRS 438433 438597 44 + . . scaffold925 GLEAN mRNA 438620 438964 0.986598 + . ID=CGI_10017428; scaffold925 WUBlastX LTR_DIRS 438620 438964 104 + . . scaffold925 GLEAN mRNA 441891 442088 0.986598 + . ID=CGI_10017428; scaffold925 WUBlastX LTR_DIRS 441891 442088 125 + . . scaffold925 GLEAN mRNA 441575 441886 0.986598 + . ID=CGI_10017428; scaffold925 WUBlastX LTR_DIRS 441575 441886 99 + . . scaffold925 GLEAN mRNA 438927 439280 0.986598 + . ID=CGI_10017428; scaffold925 WUBlastX LTR_DIRS 438927 439280 21 + . . scaffold925 GLEAN mRNA 440751 441569 0.986598 + . ID=CGI_10017428; scaffold925 WUBlastX LTR_DIRS 440751 441569 216 + . . scaffold925 GLEAN mRNA 442486 442668 0.986598 + . ID=CGI_10017428; scaffold925 WUBlastX LTR_DIRS 442486 442668 100 + . . scaffold925 GLEAN mRNA 441891 442487 0.986598 + . ID=CGI_10017428; scaffold925 WUBlastX LTR_DIRS 441891 442487 27 + . . scaffold444 GLEAN mRNA 38693 39079 0.733495 - . ID=CGI_10017431; scaffold444 WUBlastX LTR_Ngaro 38693 39220 42 - . . scaffold444 GLEAN mRNA 492427 492482 0.990769 - . ID=CGI_10017440; scaffold444 TRF Tandem_Repeat 492427 492482 112 + . . scaffold444 GLEAN mRNA 495581 495620 0.990769 - . ID=CGI_10017440; scaffold444 TRF Tandem_Repeat 495581 495620 80 + . . scaffold444 GLEAN mRNA 496491 496526 0.990769 - . ID=CGI_10017440; scaffold444 TRF Tandem_Repeat 496491 496526 72 + . . scaffold1037 GLEAN mRNA 14115 14219 0.83374 + . ID=CGI_10017443; scaffold1037 TRF Tandem_Repeat 14115 14219 72 + . . scaffold1037 GLEAN mRNA 14123 14210 0.83374 + . ID=CGI_10017443; scaffold1037 TRF Tandem_Repeat 14123 14210 77 + . . scaffold1037 GLEAN mRNA 21616 21648 0.83374 + . ID=CGI_10017443; scaffold1037 TRF Tandem_Repeat 21616 21648 66 + . . scaffold1037 GLEAN mRNA 44164 44223 0.99961 + . ID=CGI_10017444; scaffold1037 TRF Tandem_Repeat 44164 44223 120 + . . scaffold1037 GLEAN mRNA 75912 77094 0.929965 + . ID=CGI_10017447; scaffold1037 TRF Tandem_Repeat 75912 77094 572 + . . scaffold1037 GLEAN mRNA 172272 172345 0.999339 + . ID=CGI_10017452; scaffold1037 TRF Tandem_Repeat 172272 172345 148 + . . scaffold1037 GLEAN mRNA 173570 173667 0.999339 + . ID=CGI_10017452; scaffold1037 TRF Tandem_Repeat 173570 173667 169 + . . scaffold1037 GLEAN mRNA 190901 190945 1 - . ID=CGI_10017454; scaffold1037 TRF Tandem_Repeat 190901 190945 90 + . . scaffold1037 GLEAN mRNA 207029 207594 0.701525 + . ID=CGI_10017455; scaffold1037 TRF Tandem_Repeat 207029 207594 1033 + . . scaffold1037 GLEAN mRNA 208643 208682 0.701525 + . ID=CGI_10017455; scaffold1037 TRF Tandem_Repeat 208643 208682 80 + . . scaffold1037 GLEAN mRNA 211603 211697 0.72876 + . ID=CGI_10017456; scaffold1037 TRF Tandem_Repeat 211603 211697 67 + . . scaffold1037 GLEAN mRNA 212287 212484 0.72876 + . ID=CGI_10017456; scaffold1037 WUBlastX LINE_L1-Tx1 212287 212484 79 + . . scaffold1037 GLEAN mRNA 212287 212559 0.72876 + . ID=CGI_10017456; scaffold1037 WUBlastX LINE_L1 212287 212559 31 + . . scaffold1037 GLEAN mRNA 238458 238501 0.997731 - . ID=CGI_10017458; scaffold1037 TRF Tandem_Repeat 238458 238501 88 + . . scaffold1037 GLEAN mRNA 248603 248664 0.593391 + . ID=CGI_10017459; scaffold1037 TRF Tandem_Repeat 248603 248664 124 + . . scaffold1037 GLEAN mRNA 345315 345644 0.722718 + . ID=CGI_10017464; scaffold1037 WUBlastX LTR_DIRS? 345315 345644 200 + . . scaffold1037 GLEAN mRNA 344577 344789 0.722718 + . ID=CGI_10017464; scaffold1037 WUBlastX LTR_DIRS 344577 344789 108 + . . scaffold1037 GLEAN mRNA 344505 344780 0.722718 + . ID=CGI_10017464; scaffold1037 WUBlastX LTR_DIRS? 344505 344780 74 + . . scaffold1037 GLEAN mRNA 394533 394584 0.8141 - . ID=CGI_10017469; scaffold1037 TRF Tandem_Repeat 394533 394584 104 + . . scaffold1037 GLEAN mRNA 397855 397881 0.8141 - . ID=CGI_10017469; scaffold1037 TRF Tandem_Repeat 397855 397881 54 + . . scaffold1037 GLEAN mRNA 398985 399027 0.8141 - . ID=CGI_10017469; scaffold1037 TRF Tandem_Repeat 398985 399027 86 + . . scaffold1037 GLEAN mRNA 399838 399880 0.8141 - . ID=CGI_10017469; scaffold1037 TRF Tandem_Repeat 399838 399880 86 + . . scaffold1037 GLEAN mRNA 471894 471944 0.443823 + . ID=CGI_10017475; scaffold1037 TRF Tandem_Repeat 471894 471944 102 + . . scaffold1037 GLEAN mRNA 478375 478587 1 - . ID=CGI_10017476; scaffold1037 TRF Tandem_Repeat 478375 478587 215 + . . scaffold1037 GLEAN mRNA 504634 504881 1 - . ID=CGI_10017478; scaffold1037 TRF Tandem_Repeat 504634 504881 390 + . . scaffold1037 GLEAN mRNA 504634 505127 1 - . ID=CGI_10017478; scaffold1037 TRF Tandem_Repeat 504634 505127 751 + . . scaffold1037 GLEAN mRNA 504634 505127 1 - . ID=CGI_10017478; scaffold1037 TRF Tandem_Repeat 504634 505127 706 + . . scaffold1037 GLEAN mRNA 504885 505127 1 - . ID=CGI_10017478; scaffold1037 TRF Tandem_Repeat 504885 505127 387 + . . scaffold853 GLEAN mRNA 8210 8244 0.95625 - . ID=CGI_10017479; scaffold853 TRF Tandem_Repeat 8210 8244 54 + . . scaffold853 GLEAN mRNA 9700 10146 0.95625 - . ID=CGI_10017479; scaffold853 TRF Tandem_Repeat 9700 10146 602 + . . scaffold853 GLEAN mRNA 10252 10307 0.95625 - . ID=CGI_10017479; scaffold853 TRF Tandem_Repeat 10252 10307 112 + . . scaffold853 GLEAN mRNA 11477 11530 0.95625 - . ID=CGI_10017479; scaffold853 TRF Tandem_Repeat 11477 11530 108 + . . scaffold853 GLEAN mRNA 13936 14097 0.95625 - . ID=CGI_10017479; scaffold853 TRF Tandem_Repeat 13936 14097 270 + . . scaffold853 GLEAN mRNA 19429 19473 0.95625 - . ID=CGI_10017479; scaffold853 TRF Tandem_Repeat 19429 19473 56 + . . scaffold853 GLEAN mRNA 23545 24288 0.95625 - . ID=CGI_10017479; scaffold853 TRF Tandem_Repeat 23545 24288 1123 + . . scaffold853 GLEAN mRNA 63345 64047 0.997691 - . ID=CGI_10017482; scaffold853 TRF Tandem_Repeat 63345 64047 1080 + . . scaffold853 GLEAN mRNA 134462 134539 0.749882 + . ID=CGI_10017490; scaffold853 TRF Tandem_Repeat 134462 134539 53 + . . scaffold853 GLEAN mRNA 149036 149097 0.999675 + . ID=CGI_10017491; scaffold853 TRF Tandem_Repeat 149036 149097 81 + . . scaffold853 GLEAN mRNA 168471 168501 0.999675 + . ID=CGI_10017491; scaffold853 TRF Tandem_Repeat 168471 168501 62 + . . scaffold853 GLEAN mRNA 188757 188799 0.597248 - . ID=CGI_10017493; scaffold853 TRF Tandem_Repeat 188757 188799 68 + . . scaffold853 GLEAN mRNA 206913 207302 1 - . ID=CGI_10017494; scaffold853 WUBlastX DNA_Kolobok-Hyd 206913 207302 29 + . . scaffold853 GLEAN mRNA 208049 208345 1 - . ID=CGI_10017494; scaffold853 WUBlastX DNA_Kolobok-Hyd 208049 208345 31 + . . scaffold853 GLEAN mRNA 206865 207149 1 - . ID=CGI_10017494; scaffold853 WUBlastX DNA_Kolobok-Hyd 206865 207149 30 + . . scaffold853 GLEAN mRNA 207816 207890 1 - . ID=CGI_10017494; scaffold853 WUBlastX DNA_Kolobok-Hyd 207816 207890 42 + . . scaffold853 GLEAN mRNA 206913 207302 0.253956 + . ID=CGI_10017495; scaffold853 WUBlastX DNA_Kolobok-Hyd 206913 207302 29 + . . scaffold853 GLEAN mRNA 208049 208345 0.253956 + . ID=CGI_10017495; scaffold853 WUBlastX DNA_Kolobok-Hyd 208049 208345 31 + . . scaffold853 GLEAN mRNA 206865 207149 0.253956 + . ID=CGI_10017495; scaffold853 WUBlastX DNA_Kolobok-Hyd 206865 207149 30 + . . scaffold853 GLEAN mRNA 207816 207890 0.253956 + . ID=CGI_10017495; scaffold853 WUBlastX DNA_Kolobok-Hyd 207816 207890 42 + . . scaffold853 GLEAN mRNA 217442 218236 0.991473 + . ID=CGI_10017496; scaffold853 TRF Tandem_Repeat 217442 218236 967 + . . scaffold853 GLEAN mRNA 219242 219371 0.991473 + . ID=CGI_10017496; scaffold853 TRF Tandem_Repeat 219242 219371 57 + . . scaffold853 GLEAN mRNA 224939 224970 0.991473 + . ID=CGI_10017496; scaffold853 TRF Tandem_Repeat 224939 224970 64 + . . scaffold853 GLEAN mRNA 217442 218236 0.999647 - . ID=CGI_10017497; scaffold853 TRF Tandem_Repeat 217442 218236 967 + . . scaffold853 GLEAN mRNA 219242 219371 0.999647 - . ID=CGI_10017497; scaffold853 TRF Tandem_Repeat 219242 219371 57 + . . scaffold853 GLEAN mRNA 224939 224970 0.999647 - . ID=CGI_10017497; scaffold853 TRF Tandem_Repeat 224939 224970 64 + . . scaffold853 GLEAN mRNA 237645 237710 0.61441 + . ID=CGI_10017498; scaffold853 TRF Tandem_Repeat 237645 237710 78 + . . scaffold853 GLEAN mRNA 237645 237709 0.61441 + . ID=CGI_10017498; scaffold853 TRF Tandem_Repeat 237645 237709 100 + . . scaffold853 GLEAN mRNA 237645 237710 0.61441 + . ID=CGI_10017498; scaffold853 TRF Tandem_Repeat 237645 237710 84 + . . scaffold853 GLEAN mRNA 229300 229596 0.61441 + . ID=CGI_10017498; scaffold853 WUBlastX LINE_RTE-X 229300 229596 105 - . . scaffold853 GLEAN mRNA 245748 245796 1 + . ID=CGI_10017500; scaffold853 TRF Tandem_Repeat 245748 245796 98 + . . scaffold853 GLEAN mRNA 291439 291472 0.999998 - . ID=CGI_10017503; scaffold853 TRF Tandem_Repeat 291439 291472 68 + . . scaffold853 GLEAN mRNA 345666 345763 0.92582 - . ID=CGI_10017506; scaffold853 TRF Tandem_Repeat 345666 345763 144 + . . scaffold853 GLEAN mRNA 372169 372206 0.651533 - . ID=CGI_10017509; scaffold853 TRF Tandem_Repeat 372169 372206 76 + . . scaffold853 GLEAN mRNA 373423 373488 0.651533 - . ID=CGI_10017509; scaffold853 TRF Tandem_Repeat 373423 373488 123 + . . scaffold853 GLEAN mRNA 373985 374028 0.651533 - . ID=CGI_10017509; scaffold853 TRF Tandem_Repeat 373985 374028 88 + . . scaffold853 GLEAN mRNA 378518 378553 0.651533 - . ID=CGI_10017509; scaffold853 TRF Tandem_Repeat 378518 378553 72 + . . scaffold853 GLEAN mRNA 380409 380453 0.651533 - . ID=CGI_10017509; scaffold853 TRF Tandem_Repeat 380409 380453 74 + . . scaffold853 GLEAN mRNA 426063 426103 0.70571 + . ID=CGI_10017514; scaffold853 TRF Tandem_Repeat 426063 426103 82 + . . scaffold853 GLEAN mRNA 426063 426103 0.999675 - . ID=CGI_10017515; scaffold853 TRF Tandem_Repeat 426063 426103 82 + . . scaffold853 GLEAN mRNA 430815 431597 0.99996 - . ID=CGI_10017516; scaffold853 WUBlastX LINE_L2 430815 431597 23 - . . scaffold853 GLEAN mRNA 431669 432679 0.99996 - . ID=CGI_10017516; scaffold853 WUBlastX LINE_L2 431669 432679 655 - . . scaffold853 GLEAN mRNA 432575 432712 0.99996 - . ID=CGI_10017516; scaffold853 WUBlastX LINE_CR1 432575 432712 21 - . . scaffold853 GLEAN mRNA 430974 431594 0.99996 - . ID=CGI_10017516; scaffold853 WUBlastX LINE_L2 430974 431594 430 - . . scaffold853 GLEAN mRNA 433195 433275 0.99996 - . ID=CGI_10017516; scaffold853 WUBlastX LINE_L2 433195 433275 21 - . . scaffold853 GLEAN mRNA 431402 432679 0.99996 - . ID=CGI_10017516; scaffold853 WUBlastX LINE_L2 431402 432679 631 - . . scaffold853 GLEAN mRNA 449121 449189 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 449121 449189 20 - . . scaffold853 GLEAN mRNA 451931 452119 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 451931 452119 33 - . . scaffold853 GLEAN mRNA 452415 453395 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 452415 453395 478 - . . scaffold853 GLEAN mRNA 449961 450677 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 449961 450677 93 - . . scaffold853 GLEAN mRNA 453388 453822 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 453388 453822 194 - . . scaffold853 GLEAN mRNA 453388 453915 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 453388 453915 114 - . . scaffold853 GLEAN mRNA 450000 450521 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 450000 450521 220 - . . scaffold853 GLEAN mRNA 453984 454421 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 453984 454421 47 - . . scaffold853 GLEAN mRNA 449152 449310 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 449152 449310 24 - . . scaffold853 GLEAN mRNA 449631 450548 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 449631 450548 198 - . . scaffold853 GLEAN mRNA 449462 449962 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 449462 449962 48 - . . scaffold853 GLEAN mRNA 452054 452149 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy-Troyk 452054 452149 37 - . . scaffold853 GLEAN mRNA 452364 452669 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 452364 452669 98 - . . scaffold853 GLEAN mRNA 454472 454576 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 454472 454576 26 - . . scaffold853 GLEAN mRNA 466190 466684 0.615194 - . ID=CGI_10017519; scaffold853 TRF Tandem_Repeat 466190 466684 954 + . . scaffold853 GLEAN mRNA 471541 471602 0.615194 - . ID=CGI_10017519; scaffold853 TRF Tandem_Repeat 471541 471602 124 + . . scaffold853 GLEAN mRNA 475091 475102 0.615194 - . ID=CGI_10017519; scaffold853 WUBlastX LTR_Ngaro 475091 475372 48 - . . scaffold120 GLEAN mRNA 29671 29736 0.998974 + . ID=CGI_10017521; scaffold120 TRF Tandem_Repeat 29671 29736 114 + . . scaffold120 GLEAN mRNA 36078 36139 0.998974 + . ID=CGI_10017521; scaffold120 TRF Tandem_Repeat 36078 36139 61 + . . scaffold120 GLEAN mRNA 39597 39631 0.998974 + . ID=CGI_10017521; scaffold120 TRF Tandem_Repeat 39597 39631 70 + . . scaffold120 GLEAN mRNA 40402 40456 0.998974 + . ID=CGI_10017521; scaffold120 TRF Tandem_Repeat 40402 40456 110 + . . scaffold120 GLEAN mRNA 40713 41907 0.998974 + . ID=CGI_10017521; scaffold120 TRF Tandem_Repeat 40713 41907 1493 + . . scaffold120 GLEAN mRNA 42885 43260 0.998974 + . ID=CGI_10017521; scaffold120 TRF Tandem_Repeat 42885 43260 556 + . . scaffold120 GLEAN mRNA 46498 46819 0.998974 + . ID=CGI_10017521; scaffold120 TRF Tandem_Repeat 46498 46819 350 + . . scaffold120 GLEAN mRNA 46498 46825 0.998974 + . ID=CGI_10017521; scaffold120 TRF Tandem_Repeat 46498 46825 333 + . . scaffold120 GLEAN mRNA 51329 51372 0.650712 + . ID=CGI_10017522; scaffold120 TRF Tandem_Repeat 51329 51372 52 + . . scaffold120 GLEAN mRNA 57780 57995 0.650712 + . ID=CGI_10017522; scaffold120 TRF Tandem_Repeat 57780 57995 360 + . . scaffold120 GLEAN mRNA 198046 198667 0.999675 - . ID=CGI_10017534; scaffold120 TRF Tandem_Repeat 198046 198667 796 + . . scaffold120 GLEAN mRNA 198046 198667 0.999675 - . ID=CGI_10017534; scaffold120 TRF Tandem_Repeat 198046 198667 857 + . . scaffold120 GLEAN mRNA 208025 208052 0.999675 - . ID=CGI_10017534; scaffold120 TRF Tandem_Repeat 208025 208052 56 + . . scaffold120 GLEAN mRNA 215211 215489 0.999675 - . ID=CGI_10017534; scaffold120 TRF Tandem_Repeat 215211 215489 341 + . . scaffold120 GLEAN mRNA 216020 217906 0.999675 - . ID=CGI_10017534; scaffold120 TRF Tandem_Repeat 216020 217906 3486 + . . scaffold120 GLEAN mRNA 220071 220136 0.999675 - . ID=CGI_10017534; scaffold120 WUBlastX DNA_Crypton 220071 220136 22 - . . scaffold120 GLEAN mRNA 219356 219910 0.999675 - . ID=CGI_10017534; scaffold120 WUBlastX DNA_Crypton 219356 219910 117 - . . scaffold120 GLEAN mRNA 220262 220918 0.999675 - . ID=CGI_10017534; scaffold120 WUBlastX DNA_Crypton 220262 220918 244 - . . scaffold120 GLEAN mRNA 196098 196839 0.999675 - . ID=CGI_10017534; scaffold120 TRF Tandem_Repeat 196098 196839 982 + . . scaffold120 GLEAN mRNA 196098 196839 0.999675 - . ID=CGI_10017534; scaffold120 TRF Tandem_Repeat 196098 196839 978 + . . scaffold120 GLEAN mRNA 236663 236688 0.99907 - . ID=CGI_10017535; scaffold120 TRF Tandem_Repeat 236663 236688 52 + . . scaffold120 GLEAN mRNA 237022 237071 0.99907 - . ID=CGI_10017535; scaffold120 TRF Tandem_Repeat 237022 237071 91 + . . scaffold120 GLEAN mRNA 238599 238637 0.99907 - . ID=CGI_10017535; scaffold120 TRF Tandem_Repeat 238599 238637 78 + . . scaffold120 GLEAN mRNA 238744 238778 0.99907 - . ID=CGI_10017535; scaffold120 TRF Tandem_Repeat 238744 238778 70 + . . scaffold120 GLEAN mRNA 258933 260051 1 + . ID=CGI_10017537; scaffold120 TRF Tandem_Repeat 258933 260051 1487 + . . scaffold120 GLEAN mRNA 266461 266704 0.609557 - . ID=CGI_10017538; scaffold120 TRF Tandem_Repeat 266461 266704 218 + . . scaffold120 GLEAN mRNA 273885 273935 0.609557 - . ID=CGI_10017538; scaffold120 TRF Tandem_Repeat 273885 273935 57 + . . scaffold120 GLEAN mRNA 283525 283553 0.609557 - . ID=CGI_10017538; scaffold120 TRF Tandem_Repeat 283525 283553 58 + . . scaffold120 GLEAN mRNA 284840 285116 0.609557 - . ID=CGI_10017538; scaffold120 TRF Tandem_Repeat 284840 285116 374 + . . scaffold120 GLEAN mRNA 290001 290086 0.609557 - . ID=CGI_10017538; scaffold120 TRF Tandem_Repeat 290001 290086 118 + . . scaffold120 GLEAN mRNA 291694 291860 0.609557 - . ID=CGI_10017538; scaffold120 TRF Tandem_Repeat 291694 291860 100 + . . scaffold120 GLEAN mRNA 291749 291860 0.609557 - . ID=CGI_10017538; scaffold120 TRF Tandem_Repeat 291749 291860 188 + . . scaffold120 GLEAN mRNA 305656 305843 0.609557 - . ID=CGI_10017538; scaffold120 TRF Tandem_Repeat 305656 305843 112 + . . scaffold120 GLEAN mRNA 325733 325893 0.861367 - . ID=CGI_10017539; scaffold120 TRF Tandem_Repeat 325733 325893 178 + . . scaffold120 GLEAN mRNA 325899 326105 0.861367 - . ID=CGI_10017539; scaffold120 TRF Tandem_Repeat 325899 326105 145 + . . scaffold120 GLEAN mRNA 326191 326277 0.861367 - . ID=CGI_10017539; scaffold120 TRF Tandem_Repeat 326191 326277 104 + . . scaffold120 GLEAN mRNA 340615 340723 0.861367 - . ID=CGI_10017539; scaffold120 TRF Tandem_Repeat 340615 340723 62 + . . scaffold120 GLEAN mRNA 349949 350007 0.861367 - . ID=CGI_10017539; scaffold120 TRF Tandem_Repeat 349949 350007 109 + . . scaffold120 GLEAN mRNA 392027 392077 0.789057 - . ID=CGI_10017543; scaffold120 TRF Tandem_Repeat 392027 392077 102 + . . scaffold120 GLEAN mRNA 400925 401165 1 + . ID=CGI_10017544; scaffold120 TRF Tandem_Repeat 400925 401165 228 + . . scaffold120 GLEAN mRNA 440048 440179 0.734547 - . ID=CGI_10017547; scaffold120 TRF Tandem_Repeat 440048 440179 183 + . . scaffold120 GLEAN mRNA 440048 440208 0.734547 - . ID=CGI_10017547; scaffold120 TRF Tandem_Repeat 440048 440208 176 + . . scaffold120 GLEAN mRNA 496512 496547 0.732746 + . ID=CGI_10017550; scaffold120 TRF Tandem_Repeat 496512 496547 63 + . . scaffold120 GLEAN mRNA 492991 493599 0.732746 + . ID=CGI_10017550; scaffold120 WUBlastX RC_Helitron 492991 493599 70 + . . scaffold120 GLEAN mRNA 500774 501741 0.54629 - . ID=CGI_10017551; scaffold120 TRF Tandem_Repeat 500774 501741 1524 + . . scaffold381 GLEAN mRNA 51243 51274 0.984888 - . ID=CGI_10017553; scaffold381 TRF Tandem_Repeat 51243 51274 55 + . . scaffold381 GLEAN mRNA 137193 137353 0.998567 - . ID=CGI_10017555; scaffold381 TRF Tandem_Repeat 137193 137353 128 + . . scaffold381 GLEAN mRNA 141068 141105 0.998567 - . ID=CGI_10017555; scaffold381 TRF Tandem_Repeat 141068 141105 76 + . . scaffold381 GLEAN mRNA 141250 141296 0.998567 - . ID=CGI_10017555; scaffold381 TRF Tandem_Repeat 141250 141296 94 + . . scaffold381 GLEAN mRNA 153640 153700 0.998567 - . ID=CGI_10017555; scaffold381 TRF Tandem_Repeat 153640 153700 52 + . . scaffold381 GLEAN mRNA 158641 158668 0.998567 - . ID=CGI_10017555; scaffold381 TRF Tandem_Repeat 158641 158668 56 + . . scaffold381 GLEAN mRNA 159723 159768 0.998567 - . ID=CGI_10017555; scaffold381 TRF Tandem_Repeat 159723 159768 92 + . . scaffold381 GLEAN mRNA 165267 165397 0.998567 - . ID=CGI_10017555; scaffold381 TRF Tandem_Repeat 165267 165397 129 + . . scaffold381 GLEAN mRNA 167506 167916 0.998567 - . ID=CGI_10017555; scaffold381 TRF Tandem_Repeat 167506 167916 565 + . . scaffold381 GLEAN mRNA 178263 178325 0.998567 - . ID=CGI_10017555; scaffold381 TRF Tandem_Repeat 178263 178325 126 + . . scaffold381 GLEAN mRNA 165817 167211 0.998567 - . ID=CGI_10017555; scaffold381 WUBlastX LINE_L2 165817 167211 831 + . . scaffold381 GLEAN mRNA 165715 166212 0.998567 - . ID=CGI_10017555; scaffold381 WUBlastX LINE_L2 165715 166212 67 + . . scaffold381 GLEAN mRNA 165580 166440 0.998567 - . ID=CGI_10017555; scaffold381 WUBlastX LINE_Proto2 165580 166440 44 + . . scaffold381 GLEAN mRNA 187540 187611 0.949646 + . ID=CGI_10017558; scaffold381 TRF Tandem_Repeat 187540 187611 108 + . . scaffold381 GLEAN mRNA 190218 190249 0.949646 + . ID=CGI_10017558; scaffold381 TRF Tandem_Repeat 190218 190249 50 + . . scaffold381 GLEAN mRNA 193035 193067 0.949646 + . ID=CGI_10017558; scaffold381 TRF Tandem_Repeat 193035 193067 66 + . . scaffold381 GLEAN mRNA 206033 206081 0.999283 - . ID=CGI_10017559; scaffold381 TRF Tandem_Repeat 206033 206081 98 + . . scaffold381 GLEAN mRNA 208300 208359 0.999283 - . ID=CGI_10017559; scaffold381 TRF Tandem_Repeat 208300 208359 120 + . . scaffold381 GLEAN mRNA 209034 209076 0.999283 - . ID=CGI_10017559; scaffold381 TRF Tandem_Repeat 209034 209076 86 + . . scaffold381 GLEAN mRNA 211613 211658 0.999283 - . ID=CGI_10017559; scaffold381 TRF Tandem_Repeat 211613 211658 92 + . . scaffold381 GLEAN mRNA 361878 361902 0.668984 + . ID=CGI_10017563; scaffold381 TRF Tandem_Repeat 361878 361902 50 + . . scaffold381 GLEAN mRNA 365361 366086 0.668984 + . ID=CGI_10017563; scaffold381 TRF Tandem_Repeat 365361 366086 952 + . . scaffold381 GLEAN mRNA 370405 370444 0.668984 + . ID=CGI_10017563; scaffold381 TRF Tandem_Repeat 370405 370444 80 + . . scaffold381 GLEAN mRNA 375878 375919 0.668984 + . ID=CGI_10017563; scaffold381 TRF Tandem_Repeat 375878 375919 66 + . . scaffold381 GLEAN mRNA 393718 393754 1 + . ID=CGI_10017564; scaffold381 TRF Tandem_Repeat 393718 393754 74 + . . scaffold381 GLEAN mRNA 394639 394685 1 + . ID=CGI_10017564; scaffold381 TRF Tandem_Repeat 394639 394685 85 + . . scaffold381 GLEAN mRNA 396656 396689 1 + . ID=CGI_10017564; scaffold381 TRF Tandem_Repeat 396656 396689 68 + . . scaffold381 GLEAN mRNA 401003 401104 1 + . ID=CGI_10017564; scaffold381 TRF Tandem_Repeat 401003 401104 105 + . . scaffold381 GLEAN mRNA 401003 401104 1 + . ID=CGI_10017564; scaffold381 TRF Tandem_Repeat 401003 401104 123 + . . scaffold381 GLEAN mRNA 401006 401102 1 + . ID=CGI_10017564; scaffold381 TRF Tandem_Repeat 401006 401102 88 + . . scaffold381 GLEAN mRNA 401898 401923 1 + . ID=CGI_10017564; scaffold381 TRF Tandem_Repeat 401898 401923 52 + . . scaffold381 GLEAN mRNA 401958 402029 1 + . ID=CGI_10017564; scaffold381 TRF Tandem_Repeat 401958 402029 144 + . . scaffold381 GLEAN mRNA 406842 406895 1 + . ID=CGI_10017564; scaffold381 TRF Tandem_Repeat 406842 406895 99 + . . scaffold381 GLEAN mRNA 420009 420035 0.998876 - . ID=CGI_10017565; scaffold381 TRF Tandem_Repeat 420009 420035 54 + . . scaffold381 GLEAN mRNA 420087 420165 0.998876 - . ID=CGI_10017565; scaffold381 TRF Tandem_Repeat 420087 420165 158 + . . scaffold381 GLEAN mRNA 426101 426763 0.998876 - . ID=CGI_10017565; scaffold381 TRF Tandem_Repeat 426101 426763 1218 + . . scaffold381 GLEAN mRNA 432343 432456 0.970742 - . ID=CGI_10017566; scaffold381 TRF Tandem_Repeat 432343 432456 183 + . . scaffold381 GLEAN mRNA 433987 434027 0.970742 - . ID=CGI_10017566; scaffold381 TRF Tandem_Repeat 433987 434027 82 + . . scaffold381 GLEAN mRNA 441214 441987 0.970742 - . ID=CGI_10017566; scaffold381 WUBlastX LINE_RTE-BovB 441214 441987 333 - . . scaffold381 GLEAN mRNA 441996 442313 0.970742 - . ID=CGI_10017566; scaffold381 WUBlastX LINE_RTE-BovB 441996 442313 373 - . . scaffold381 GLEAN mRNA 442020 442397 0.970742 - . ID=CGI_10017566; scaffold381 WUBlastX LINE_R2 442020 442397 72 - . . scaffold381 GLEAN mRNA 442002 442592 0.970742 - . ID=CGI_10017566; scaffold381 WUBlastX LINE_L1 442002 442592 29 - . . scaffold1402 GLEAN mRNA 35224 35261 0.260031 - . ID=CGI_10017572; scaffold1402 TRF Tandem_Repeat 35224 35261 58 + . . scaffold1402 GLEAN mRNA 40733 41004 0.260031 - . ID=CGI_10017572; scaffold1402 TRF Tandem_Repeat 40733 41004 454 + . . scaffold1402 GLEAN mRNA 40794 41401 0.260031 - . ID=CGI_10017572; scaffold1402 TRF Tandem_Repeat 40794 41401 430 + . . scaffold1402 GLEAN mRNA 40989 41338 0.260031 - . ID=CGI_10017572; scaffold1402 TRF Tandem_Repeat 40989 41338 619 + . . scaffold1402 GLEAN mRNA 40728 41418 0.260031 - . ID=CGI_10017572; scaffold1402 TRF Tandem_Repeat 40728 41418 480 + . . scaffold1402 GLEAN mRNA 64753 64816 1 - . ID=CGI_10017574; scaffold1402 TRF Tandem_Repeat 64753 64816 74 + . . scaffold1402 GLEAN mRNA 64756 64816 1 - . ID=CGI_10017574; scaffold1402 TRF Tandem_Repeat 64756 64816 95 + . . scaffold1402 GLEAN mRNA 65649 65717 1 - . ID=CGI_10017574; scaffold1402 TRF Tandem_Repeat 65649 65717 75 + . . scaffold1402 GLEAN mRNA 73640 73741 1 - . ID=CGI_10017574; scaffold1402 TRF Tandem_Repeat 73640 73741 131 + . . scaffold1402 GLEAN mRNA 73859 73901 1 - . ID=CGI_10017574; scaffold1402 TRF Tandem_Repeat 73859 73901 86 + . . scaffold1402 GLEAN mRNA 74219 74271 1 - . ID=CGI_10017574; scaffold1402 TRF Tandem_Repeat 74219 74271 106 + . . scaffold1402 GLEAN mRNA 86632 86681 0.902989 - . ID=CGI_10017576; scaffold1402 TRF Tandem_Repeat 86632 86681 93 + . . scaffold1402 GLEAN mRNA 90403 90632 0.902989 - . ID=CGI_10017576; scaffold1402 TRF Tandem_Repeat 90403 90632 237 + . . scaffold1402 GLEAN mRNA 112108 112147 0.319098 + . ID=CGI_10017577; scaffold1402 TRF Tandem_Repeat 112108 112147 80 + . . scaffold1402 GLEAN mRNA 157835 158080 0.996561 - . ID=CGI_10017580; scaffold1402 WUBlastX LINE_RTE-X 157835 158080 73 + . . scaffold1402 GLEAN mRNA 157826 158209 0.996561 - . ID=CGI_10017580; scaffold1402 WUBlastX LINE_RTE-X 157826 158209 62 + . . scaffold1402 GLEAN mRNA 168423 168470 0.999994 - . ID=CGI_10017581; scaffold1402 TRF Tandem_Repeat 168423 168470 96 + . . scaffold1402 GLEAN mRNA 169468 169536 0.999994 - . ID=CGI_10017581; scaffold1402 TRF Tandem_Repeat 169468 169536 138 + . . scaffold1402 GLEAN mRNA 173321 175035 0.999994 - . ID=CGI_10017581; scaffold1402 TRF Tandem_Repeat 173321 175035 2706 + . . scaffold1402 GLEAN mRNA 176439 176505 0.999994 - . ID=CGI_10017581; scaffold1402 TRF Tandem_Repeat 176439 176505 134 + . . scaffold1402 GLEAN mRNA 241208 241302 0.999676 - . ID=CGI_10017583; scaffold1402 TRF Tandem_Repeat 241208 241302 181 + . . scaffold1402 GLEAN mRNA 245164 245207 0.999676 - . ID=CGI_10017583; scaffold1402 TRF Tandem_Repeat 245164 245207 88 + . . scaffold1402 GLEAN mRNA 246435 246478 0.999676 - . ID=CGI_10017583; scaffold1402 TRF Tandem_Repeat 246435 246478 88 + . . scaffold1402 GLEAN mRNA 246579 246637 0.999676 - . ID=CGI_10017583; scaffold1402 TRF Tandem_Repeat 246579 246637 52 + . . scaffold1402 GLEAN mRNA 263523 263589 0.999925 - . ID=CGI_10017585; scaffold1402 TRF Tandem_Repeat 263523 263589 80 + . . scaffold1402 GLEAN mRNA 264084 264117 0.999925 - . ID=CGI_10017585; scaffold1402 TRF Tandem_Repeat 264084 264117 68 + . . scaffold1402 GLEAN mRNA 264115 264147 0.999925 - . ID=CGI_10017585; scaffold1402 TRF Tandem_Repeat 264115 264147 66 + . . scaffold1402 GLEAN mRNA 264335 264385 0.999925 - . ID=CGI_10017585; scaffold1402 TRF Tandem_Repeat 264335 264385 102 + . . scaffold1402 GLEAN mRNA 266774 266868 0.999925 - . ID=CGI_10017585; scaffold1402 TRF Tandem_Repeat 266774 266868 118 + . . scaffold1402 GLEAN mRNA 286018 286054 0.974469 - . ID=CGI_10017586; scaffold1402 TRF Tandem_Repeat 286018 286054 74 + . . scaffold1402 GLEAN mRNA 286162 286196 0.974469 - . ID=CGI_10017586; scaffold1402 TRF Tandem_Repeat 286162 286196 70 + . . scaffold1402 GLEAN mRNA 303557 303671 0.806242 - . ID=CGI_10017588; scaffold1402 TRF Tandem_Repeat 303557 303671 221 + . . scaffold1402 GLEAN mRNA 342104 342475 0.999947 - . ID=CGI_10017589; scaffold1402 WUBlastX LINE_CR1 342104 342475 245 + . . scaffold1402 GLEAN mRNA 341752 341949 0.999947 - . ID=CGI_10017589; scaffold1402 WUBlastX LINE_CR1 341752 341949 50 + . . scaffold1402 GLEAN mRNA 342167 343591 0.999947 - . ID=CGI_10017589; scaffold1402 WUBlastX LINE_CR1 342167 343591 455 + . . scaffold1402 GLEAN mRNA 341815 341949 0.999947 - . ID=CGI_10017589; scaffold1402 WUBlastX LINE_CR1 341815 341949 66 + . . scaffold1402 GLEAN mRNA 342478 343029 0.999947 - . ID=CGI_10017589; scaffold1402 WUBlastX LINE_CR1 342478 343029 458 + . . scaffold1402 GLEAN mRNA 342024 342188 0.999947 - . ID=CGI_10017589; scaffold1402 WUBlastX LINE_CR1 342024 342188 74 + . . scaffold1402 GLEAN mRNA 341836 342000 0.999947 - . ID=CGI_10017589; scaffold1402 WUBlastX LINE_CR1 341836 342000 51 + . . scaffold1402 GLEAN mRNA 343055 343711 0.999947 - . ID=CGI_10017589; scaffold1402 WUBlastX LINE_CR1-L2 343055 343711 43 + . . scaffold1402 GLEAN mRNA 391324 391383 0.999567 + . ID=CGI_10017592; scaffold1402 TRF Tandem_Repeat 391324 391383 66 + . . scaffold1402 GLEAN mRNA 404127 404864 0.863535 + . ID=CGI_10017593; scaffold1402 WUBlastX DNA_TcMar-Tc1 404127 404864 94 + . . scaffold1402 GLEAN mRNA 404565 404864 0.863535 + . ID=CGI_10017593; scaffold1402 WUBlastX DNA_TcMar-Tc1 404565 404864 155 + . . scaffold1402 GLEAN mRNA 403981 404553 0.863535 + . ID=CGI_10017593; scaffold1402 WUBlastX DNA_TcMar-Tc1 403981 404553 22 + . . scaffold1670 GLEAN mRNA 31530 31573 0.542324 + . ID=CGI_10017595; scaffold1670 TRF Tandem_Repeat 31530 31573 88 + . . scaffold1670 GLEAN mRNA 39543 39599 0.542324 + . ID=CGI_10017595; scaffold1670 TRF Tandem_Repeat 39543 39599 98 + . . scaffold1670 GLEAN mRNA 35276 35425 0.542324 + . ID=CGI_10017595; scaffold1670 WUBlastX LINE_R2-Hero 35276 35425 22 - . . scaffold1670 GLEAN mRNA 35467 35808 0.542324 + . ID=CGI_10017595; scaffold1670 WUBlastX LINE_R2-Hero 35467 35808 135 - . . scaffold1670 GLEAN mRNA 36071 36199 0.542324 + . ID=CGI_10017595; scaffold1670 WUBlastX LINE_R2-Hero 36071 36199 34 - . . scaffold1670 GLEAN mRNA 44050 44184 0.542324 + . ID=CGI_10017595; scaffold1670 WUBlastX DNA_TcMar-Marin 44050 44184 46 - . . scaffold1670 GLEAN mRNA 71098 71971 1 - . ID=CGI_10017597; scaffold1670 TRF Tandem_Repeat 71098 71971 1429 + . . scaffold1670 GLEAN mRNA 125122 125499 1 + . ID=CGI_10017601; scaffold1670 WUBlastX LTR_DIRS 124978 125595 121 + . . scaffold1670 GLEAN mRNA 138913 139087 1 + . ID=CGI_10017602; scaffold1670 TRF Tandem_Repeat 138913 139087 165 + . . scaffold1670 GLEAN mRNA 138913 139087 0.999378 - . ID=CGI_10017603; scaffold1670 TRF Tandem_Repeat 138913 139087 165 + . . scaffold1670 GLEAN mRNA 153446 153769 0.999639 - . ID=CGI_10017604; scaffold1670 TRF Tandem_Repeat 153446 153769 450 + . . scaffold1670 GLEAN mRNA 169600 169655 0.999639 - . ID=CGI_10017604; scaffold1670 TRF Tandem_Repeat 169600 169655 112 + . . scaffold1670 GLEAN mRNA 173970 174181 0.999639 - . ID=CGI_10017604; scaffold1670 TRF Tandem_Repeat 173970 174181 379 + . . scaffold1670 GLEAN mRNA 188740 189016 0.999922 + . ID=CGI_10017606; scaffold1670 TRF Tandem_Repeat 188740 189016 242 + . . scaffold1670 GLEAN mRNA 194247 194357 0.999922 + . ID=CGI_10017606; scaffold1670 TRF Tandem_Repeat 194247 194357 179 + . . scaffold1670 GLEAN mRNA 194252 194331 0.999922 + . ID=CGI_10017606; scaffold1670 TRF Tandem_Repeat 194252 194331 56 + . . scaffold1670 GLEAN mRNA 220764 220810 0.702384 - . ID=CGI_10017608; scaffold1670 TRF Tandem_Repeat 220764 220810 94 + . . scaffold1670 GLEAN mRNA 262253 262327 0.949717 + . ID=CGI_10017610; scaffold1670 TRF Tandem_Repeat 262253 262327 143 + . . scaffold1670 GLEAN mRNA 267796 267887 0.949717 + . ID=CGI_10017610; scaffold1670 TRF Tandem_Repeat 267796 267887 57 + . . scaffold1670 GLEAN mRNA 267796 267852 0.949717 + . ID=CGI_10017610; scaffold1670 TRF Tandem_Repeat 267796 267852 59 + . . scaffold1670 GLEAN mRNA 280547 280591 0.988958 + . ID=CGI_10017612; scaffold1670 TRF Tandem_Repeat 280547 280591 90 + . . scaffold1670 GLEAN mRNA 288959 290358 0.999186 - . ID=CGI_10017613; scaffold1670 TRF Tandem_Repeat 288959 290358 1578 + . . scaffold1670 GLEAN mRNA 288959 290358 0.999186 - . ID=CGI_10017613; scaffold1670 TRF Tandem_Repeat 288959 290358 1706 + . . scaffold1670 GLEAN mRNA 319762 320143 0.999676 + . ID=CGI_10017618; scaffold1670 TRF Tandem_Repeat 319762 320143 516 + . . scaffold1670 GLEAN mRNA 320818 321224 0.999676 + . ID=CGI_10017618; scaffold1670 TRF Tandem_Repeat 320818 321224 445 + . . scaffold1670 GLEAN mRNA 320818 321224 0.999676 + . ID=CGI_10017618; scaffold1670 TRF Tandem_Repeat 320818 321224 445 + . . scaffold1670 GLEAN mRNA 320818 321224 0.999676 + . ID=CGI_10017618; scaffold1670 TRF Tandem_Repeat 320818 321224 451 + . . scaffold1670 GLEAN mRNA 321012 321072 0.999676 + . ID=CGI_10017618; scaffold1670 TRF Tandem_Repeat 321012 321072 54 + . . scaffold1670 GLEAN mRNA 321562 321670 0.999676 + . ID=CGI_10017618; scaffold1670 TRF Tandem_Repeat 321562 321670 101 + . . scaffold1670 GLEAN mRNA 321577 321670 0.999676 + . ID=CGI_10017618; scaffold1670 TRF Tandem_Repeat 321577 321670 134 + . . scaffold1670 GLEAN mRNA 322421 322531 0.999676 + . ID=CGI_10017618; scaffold1670 TRF Tandem_Repeat 322421 322531 71 + . . scaffold1670 GLEAN mRNA 317163 317936 0.999676 + . ID=CGI_10017618; scaffold1670 WUBlastX LTR_Ngaro 317163 317936 112 - . . scaffold1670 GLEAN mRNA 317322 318041 0.999676 + . ID=CGI_10017618; scaffold1670 WUBlastX LTR_Ngaro 317322 318041 243 - . . scaffold1670 GLEAN mRNA 387339 387399 0.441452 - . ID=CGI_10017623; scaffold1670 TRF Tandem_Repeat 387339 387399 95 + . . scaffold1670 GLEAN mRNA 398651 399004 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_Jockey 398651 399004 69 + . . scaffold1670 GLEAN mRNA 406850 407188 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_RTE-X 406850 407188 80 + . . scaffold1670 GLEAN mRNA 398454 398639 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 398454 398639 29 + . . scaffold1670 GLEAN mRNA 398753 399064 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 398753 399064 133 + . . scaffold1670 GLEAN mRNA 399064 399243 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 399064 399243 84 + . . scaffold1670 GLEAN mRNA 398726 399004 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 398726 399004 219 + . . scaffold1670 GLEAN mRNA 404146 404607 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 404146 404607 205 + . . scaffold1670 GLEAN mRNA 399215 399331 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 399215 399331 30 + . . scaffold1670 GLEAN mRNA 398765 399175 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 398765 399175 104 + . . scaffold1670 GLEAN mRNA 404065 404610 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 404065 404610 160 + . . scaffold1670 GLEAN mRNA 399500 399838 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_L2 399500 399838 44 + . . scaffold1670 GLEAN mRNA 399593 399832 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 399593 399832 62 + . . scaffold1670 GLEAN mRNA 399838 399957 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 399838 399957 46 + . . scaffold1670 GLEAN mRNA 399043 399291 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 399043 399291 60 + . . scaffold1670 GLEAN mRNA 398265 398594 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 398265 398594 89 + . . scaffold1670 GLEAN mRNA 399647 399868 0.441452 - . ID=CGI_10017623; scaffold1670 WUBlastX LINE_CR1 399647 399868 103 + . . scaffold1670 GLEAN mRNA 387339 387399 1 + . ID=CGI_10017624; scaffold1670 TRF Tandem_Repeat 387339 387399 95 + . . scaffold1670 GLEAN mRNA 456522 456908 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LTR_DIRS 456522 456908 102 + . . scaffold1670 GLEAN mRNA 456913 457107 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LTR_DIRS 456913 457107 29 + . . scaffold1670 GLEAN mRNA 456582 457040 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LTR_DIRS 456582 457040 141 + . . scaffold1670 GLEAN mRNA 456585 456908 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LTR_DIRS 456585 456908 152 + . . scaffold1670 GLEAN mRNA 456390 456971 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LTR_Gypsy 456390 456971 63 + . . scaffold1670 GLEAN mRNA 461217 462018 0.99939 + . ID=CGI_10017627; scaffold1670 TRF Tandem_Repeat 461217 462018 981 + . . scaffold1670 GLEAN mRNA 468648 468711 0.99939 + . ID=CGI_10017627; scaffold1670 TRF Tandem_Repeat 468648 468711 83 + . . scaffold1670 GLEAN mRNA 464476 465363 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LINE_L1-Tx1 464476 465363 133 - . . scaffold1670 GLEAN mRNA 465338 465586 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LINE_L1-Tx1 465338 465586 135 - . . scaffold1670 GLEAN mRNA 463633 464223 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LINE_L1-Tx1 463633 464223 102 - . . scaffold1670 GLEAN mRNA 465359 465640 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LINE_L1 465359 465640 108 - . . scaffold1670 GLEAN mRNA 464461 465078 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LINE_L1-Tx1 464461 465078 139 - . . scaffold1670 GLEAN mRNA 463663 465120 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LINE_L1 463663 465120 22 - . . scaffold1670 GLEAN mRNA 465350 465709 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LINE_L1-Tx1 465350 465709 72 - . . scaffold1670 GLEAN mRNA 464680 465027 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LINE_L1-Tx1 464680 465027 150 - . . scaffold1670 GLEAN mRNA 487903 488085 0.999087 + . ID=CGI_10017628; scaffold1670 TRF Tandem_Repeat 487903 488085 54 + . . scaffold378 GLEAN mRNA 2186 2352 1 - . ID=CGI_10017629; scaffold378 TRF Tandem_Repeat 2186 2352 271 + . . scaffold378 GLEAN mRNA 3403 3574 1 - . ID=CGI_10017629; scaffold378 TRF Tandem_Repeat 3403 3574 241 + . . scaffold378 GLEAN mRNA 14431 14455 1 - . ID=CGI_10017629; scaffold378 TRF Tandem_Repeat 14431 14455 50 + . . scaffold378 GLEAN mRNA 40013 40129 0.994619 + . ID=CGI_10017631; scaffold378 TRF Tandem_Repeat 40013 40129 85 + . . scaffold378 GLEAN mRNA 78980 79157 1 + . ID=CGI_10017634; scaffold378 TRF Tandem_Repeat 78980 79157 193 + . . scaffold378 GLEAN mRNA 78980 79177 1 + . ID=CGI_10017634; scaffold378 TRF Tandem_Repeat 78980 79177 111 + . . scaffold378 GLEAN mRNA 185084 185283 1 - . ID=CGI_10017638; scaffold378 TRF Tandem_Repeat 185084 185283 228 + . . scaffold378 GLEAN mRNA 185086 186036 1 - . ID=CGI_10017638; scaffold378 TRF Tandem_Repeat 185086 186036 555 + . . scaffold378 GLEAN mRNA 185479 186013 1 - . ID=CGI_10017638; scaffold378 TRF Tandem_Repeat 185479 186013 638 + . . scaffold378 GLEAN mRNA 185479 186036 1 - . ID=CGI_10017638; scaffold378 TRF Tandem_Repeat 185479 186036 637 + . . scaffold378 GLEAN mRNA 200549 200609 0.812858 - . ID=CGI_10017640; scaffold378 TRF Tandem_Repeat 200549 200609 95 + . . scaffold378 GLEAN mRNA 225403 225710 0.996816 + . ID=CGI_10017641; scaffold378 TRF Tandem_Repeat 225403 225710 508 + . . scaffold378 GLEAN mRNA 232954 234212 0.996816 + . ID=CGI_10017641; scaffold378 TRF Tandem_Repeat 232954 234212 1996 + . . scaffold378 GLEAN mRNA 237968 238120 0.996816 + . ID=CGI_10017641; scaffold378 TRF Tandem_Repeat 237968 238120 236 + . . scaffold378 GLEAN mRNA 241948 241983 0.996816 + . ID=CGI_10017641; scaffold378 TRF Tandem_Repeat 241948 241983 54 + . . scaffold378 GLEAN mRNA 240627 241904 0.996816 + . ID=CGI_10017641; scaffold378 WUBlastX LINE_L1-Tx1 240627 241904 227 - . . scaffold378 GLEAN mRNA 243570 244796 0.996816 + . ID=CGI_10017641; scaffold378 WUBlastX LINE_Jockey 243570 244796 54 - . . scaffold378 GLEAN mRNA 243441 244601 0.996816 + . ID=CGI_10017641; scaffold378 WUBlastX LINE_L1-Tx1 243441 244601 837 - . . scaffold378 GLEAN mRNA 225403 225710 1 - . ID=CGI_10017642; scaffold378 TRF Tandem_Repeat 225403 225710 508 + . . scaffold378 GLEAN mRNA 255095 255283 0.78919 - . ID=CGI_10017643; scaffold378 WUBlastX LINE_L1 255095 255283 82 - . . scaffold378 GLEAN mRNA 255434 255988 0.78919 - . ID=CGI_10017643; scaffold378 WUBlastX DNA_Maverick 255434 255988 348 - . . scaffold378 GLEAN mRNA 255095 255250 0.78919 - . ID=CGI_10017643; scaffold378 WUBlastX LINE_L1-Tx1 255095 255250 108 - . . scaffold378 GLEAN mRNA 255175 255420 0.78919 - . ID=CGI_10017643; scaffold378 WUBlastX LINE_L1-Tx1 255175 255420 42 - . . scaffold378 GLEAN mRNA 344684 345169 0.999372 - . ID=CGI_10017652; scaffold378 WUBlastX LTR_Gypsy 344684 345169 27 - . . scaffold378 GLEAN mRNA 344813 345169 0.999372 - . ID=CGI_10017652; scaffold378 WUBlastX LTR_Gypsy 344813 345169 58 - . . scaffold378 GLEAN mRNA 344975 345214 0.999372 - . ID=CGI_10017652; scaffold378 WUBlastX LTR_Gypsy 344975 345214 34 - . . scaffold378 GLEAN mRNA 368015 368049 0.825862 - . ID=CGI_10017655; scaffold378 TRF Tandem_Repeat 368015 368049 52 + . . scaffold378 GLEAN mRNA 368019 368059 0.825862 - . ID=CGI_10017655; scaffold378 TRF Tandem_Repeat 368019 368059 55 + . . scaffold378 GLEAN mRNA 375466 375546 0.825862 - . ID=CGI_10017655; scaffold378 TRF Tandem_Repeat 375466 375546 126 + . . scaffold378 GLEAN mRNA 377181 377360 0.825862 - . ID=CGI_10017655; scaffold378 WUBlastX LINE_RTE-X 377181 377360 111 - . . scaffold378 GLEAN mRNA 390068 390099 0.377996 - . ID=CGI_10017658; scaffold378 TRF Tandem_Repeat 390068 390099 64 + . . scaffold378 GLEAN mRNA 399048 399084 1 + . ID=CGI_10017659; scaffold378 TRF Tandem_Repeat 399048 399084 74 + . . scaffold378 GLEAN mRNA 411557 412270 0.287061 + . ID=CGI_10017660; scaffold378 TRF Tandem_Repeat 411557 412270 830 + . . scaffold378 GLEAN mRNA 415817 415986 0.287061 + . ID=CGI_10017660; scaffold378 TRF Tandem_Repeat 415817 415986 126 + . . scaffold378 GLEAN mRNA 428406 428533 0.287061 + . ID=CGI_10017660; scaffold378 TRF Tandem_Repeat 428406 428533 229 + . . scaffold378 GLEAN mRNA 432290 432340 1 - . ID=CGI_10017662; scaffold378 TRF Tandem_Repeat 432290 432340 102 + . . scaffold378 GLEAN mRNA 464545 464569 0.999149 - . ID=CGI_10017666; scaffold378 TRF Tandem_Repeat 464545 464569 50 + . . scaffold378 GLEAN mRNA 465364 465408 0.999149 - . ID=CGI_10017666; scaffold378 TRF Tandem_Repeat 465364 465408 90 + . . scaffold378 GLEAN mRNA 486525 486562 0.495026 - . ID=CGI_10017667; scaffold378 TRF Tandem_Repeat 486525 486562 76 + . . scaffold621 GLEAN mRNA 71765 71800 0.549323 - . ID=CGI_10017670; scaffold621 TRF Tandem_Repeat 71765 71800 72 + . . scaffold621 GLEAN mRNA 72006 72034 0.549323 - . ID=CGI_10017670; scaffold621 TRF Tandem_Repeat 72006 72034 58 + . . scaffold621 GLEAN mRNA 75590 75649 0.549323 - . ID=CGI_10017670; scaffold621 TRF Tandem_Repeat 75590 75649 120 + . . scaffold621 GLEAN mRNA 78158 78274 0.549323 - . ID=CGI_10017670; scaffold621 TRF Tandem_Repeat 78158 78274 83 + . . scaffold621 GLEAN mRNA 78274 78412 0.549323 - . ID=CGI_10017670; scaffold621 TRF Tandem_Repeat 78274 78412 116 + . . scaffold621 GLEAN mRNA 72300 72998 0.549323 - . ID=CGI_10017670; scaffold621 WUBlastX LINE_RTE-X 72300 72998 115 - . . scaffold621 GLEAN mRNA 133781 133835 0.796035 + . ID=CGI_10017672; scaffold621 TRF Tandem_Repeat 133781 133835 103 + . . scaffold621 GLEAN mRNA 151982 153964 0.796035 + . ID=CGI_10017672; scaffold621 WUBlastX LTR_DIRS 151982 153964 782 - . . scaffold621 GLEAN mRNA 151191 152090 0.796035 + . ID=CGI_10017672; scaffold621 WUBlastX LTR_DIRS 151191 152090 389 - . . scaffold621 GLEAN mRNA 152324 154069 0.796035 + . ID=CGI_10017672; scaffold621 WUBlastX LTR_DIRS 152324 154069 907 - . . scaffold621 GLEAN mRNA 154248 154445 0.796035 + . ID=CGI_10017672; scaffold621 WUBlastX LTR_Gypsy 154248 154445 26 - . . scaffold621 GLEAN mRNA 153332 154258 0.796035 + . ID=CGI_10017672; scaffold621 WUBlastX LTR_Gypsy 153332 154258 27 - . . scaffold621 GLEAN mRNA 164676 164728 0.796035 + . ID=CGI_10017672; scaffold621 TRF Tandem_Repeat 164676 164728 106 + . . scaffold621 GLEAN mRNA 189470 189711 0.796035 + . ID=CGI_10017672; scaffold621 TRF Tandem_Repeat 189470 189711 430 + . . scaffold621 GLEAN mRNA 192898 192951 0.796035 + . ID=CGI_10017672; scaffold621 TRF Tandem_Repeat 192898 192951 92 + . . scaffold621 GLEAN mRNA 204692 204741 0.796035 + . ID=CGI_10017672; scaffold621 TRF Tandem_Repeat 204692 204741 100 + . . scaffold621 GLEAN mRNA 212237 212331 0.796035 + . ID=CGI_10017672; scaffold621 TRF Tandem_Repeat 212237 212331 118 + . . scaffold621 GLEAN mRNA 234840 235315 0.796035 + . ID=CGI_10017672; scaffold621 TRF Tandem_Repeat 234840 235315 653 + . . scaffold621 GLEAN mRNA 235232 235318 0.796035 + . ID=CGI_10017672; scaffold621 TRF Tandem_Repeat 235232 235318 59 + . . scaffold621 GLEAN mRNA 235331 235399 0.796035 + . ID=CGI_10017672; scaffold621 TRF Tandem_Repeat 235331 235399 57 + . . scaffold621 GLEAN mRNA 234852 235405 0.796035 + . ID=CGI_10017672; scaffold621 TRF Tandem_Repeat 234852 235405 508 + . . scaffold621 GLEAN mRNA 235150 235403 0.796035 + . ID=CGI_10017672; scaffold621 TRF Tandem_Repeat 235150 235403 199 + . . scaffold621 GLEAN mRNA 212355 213146 0.796035 + . ID=CGI_10017672; scaffold621 TRF Tandem_Repeat 212355 213146 1126 + . . scaffold621 GLEAN mRNA 154047 154069 0.573337 - . ID=CGI_10017674; scaffold621 WUBlastX LTR_DIRS 152324 154069 907 - . . scaffold621 GLEAN mRNA 154248 154445 0.573337 - . ID=CGI_10017674; scaffold621 WUBlastX LTR_Gypsy 154248 154445 26 - . . scaffold621 GLEAN mRNA 154047 154258 0.573337 - . ID=CGI_10017674; scaffold621 WUBlastX LTR_Gypsy 153332 154258 27 - . . scaffold621 GLEAN mRNA 244099 244170 0.999593 - . ID=CGI_10017676; scaffold621 TRF Tandem_Repeat 244099 244170 74 + . . scaffold621 GLEAN mRNA 244102 244170 0.999593 - . ID=CGI_10017676; scaffold621 TRF Tandem_Repeat 244102 244170 77 + . . scaffold621 GLEAN mRNA 244102 244169 0.999593 - . ID=CGI_10017676; scaffold621 TRF Tandem_Repeat 244102 244169 70 + . . scaffold621 GLEAN mRNA 244103 244170 0.999593 - . ID=CGI_10017676; scaffold621 TRF Tandem_Repeat 244103 244170 63 + . . scaffold621 GLEAN mRNA 253537 253585 0.999593 - . ID=CGI_10017676; scaffold621 TRF Tandem_Repeat 253537 253585 98 + . . scaffold621 GLEAN mRNA 258810 258873 0.999593 - . ID=CGI_10017676; scaffold621 TRF Tandem_Repeat 258810 258873 128 + . . scaffold621 GLEAN mRNA 283759 283850 0.261056 - . ID=CGI_10017677; scaffold621 TRF Tandem_Repeat 283759 283850 53 + . . scaffold621 GLEAN mRNA 291166 291220 0.261056 - . ID=CGI_10017677; scaffold621 TRF Tandem_Repeat 291166 291220 110 + . . scaffold621 GLEAN mRNA 299344 299428 0.261056 - . ID=CGI_10017677; scaffold621 TRF Tandem_Repeat 299344 299428 161 + . . scaffold621 GLEAN mRNA 302301 302333 0.261056 - . ID=CGI_10017677; scaffold621 TRF Tandem_Repeat 302301 302333 66 + . . scaffold621 GLEAN mRNA 306271 306684 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX LTR_Ngaro 306271 306684 70 + . . scaffold621 GLEAN mRNA 304796 306352 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX LTR_Ngaro 304796 306352 1128 + . . scaffold621 GLEAN mRNA 303940 304509 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX LTR_Ngaro 303940 304509 209 + . . scaffold621 GLEAN mRNA 303877 304749 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX LTR_Ngaro 303877 304749 75 + . . scaffold621 GLEAN mRNA 304087 304563 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX LTR_Ngaro 304087 304563 223 + . . scaffold621 GLEAN mRNA 303778 304539 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX LTR_Ngaro 303778 304539 143 + . . scaffold621 GLEAN mRNA 314190 314242 0.261056 - . ID=CGI_10017677; scaffold621 TRF Tandem_Repeat 314190 314242 55 + . . scaffold621 GLEAN mRNA 316556 316813 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX DNA_Academ 316556 316813 177 - . . scaffold621 GLEAN mRNA 314683 315774 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX DNA_Academ 314683 315774 536 - . . scaffold621 GLEAN mRNA 315804 316538 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX DNA_Academ 315804 316538 225 - . . scaffold621 GLEAN mRNA 316211 316930 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX DNA_Academ 316211 316969 149 - . . scaffold621 GLEAN mRNA 371842 372505 0.996965 - . ID=CGI_10017688; scaffold621 TRF Tandem_Repeat 371842 372505 729 + . . scaffold621 GLEAN mRNA 374185 374235 0.996965 - . ID=CGI_10017688; scaffold621 TRF Tandem_Repeat 374185 374235 68 + . . scaffold621 GLEAN mRNA 374177 374218 0.996965 - . ID=CGI_10017688; scaffold621 TRF Tandem_Repeat 374177 374218 57 + . . scaffold621 GLEAN mRNA 374177 374227 0.996965 - . ID=CGI_10017688; scaffold621 TRF Tandem_Repeat 374177 374227 75 + . . scaffold621 GLEAN mRNA 375221 375255 0.996965 - . ID=CGI_10017688; scaffold621 TRF Tandem_Repeat 375221 375255 70 + . . scaffold621 GLEAN mRNA 360524 360820 0.996965 - . ID=CGI_10017688; scaffold621 WUBlastX LTR_DIRS 360524 360820 66 - . . scaffold621 GLEAN mRNA 360825 360995 0.996965 - . ID=CGI_10017688; scaffold621 WUBlastX LTR_DIRS 360825 360995 52 - . . scaffold621 GLEAN mRNA 360334 360450 0.996965 - . ID=CGI_10017688; scaffold621 WUBlastX LTR_DIRS 360334 360450 41 - . . scaffold621 GLEAN mRNA 360334 360546 0.996965 - . ID=CGI_10017688; scaffold621 WUBlastX LTR_DIRS 360334 360546 35 - . . scaffold621 GLEAN mRNA 458525 458573 0.28032 - . ID=CGI_10017690; scaffold621 TRF Tandem_Repeat 458525 458573 64 + . . scaffold621 GLEAN mRNA 471472 471506 1 + . ID=CGI_10017691; scaffold621 TRF Tandem_Repeat 471472 471506 70 + . . scaffold621 GLEAN mRNA 473778 473824 1 + . ID=CGI_10017691; scaffold621 TRF Tandem_Repeat 473778 473824 94 + . . scaffold44098 GLEAN mRNA 30171 31154 0.998075 - . ID=CGI_10017695; scaffold44098 TRF Tandem_Repeat 30171 31154 1227 + . . scaffold44098 GLEAN mRNA 30908 31054 0.998075 - . ID=CGI_10017695; scaffold44098 TRF Tandem_Repeat 30908 31054 59 + . . scaffold44098 GLEAN mRNA 31543 32146 0.998075 - . ID=CGI_10017695; scaffold44098 TRF Tandem_Repeat 31543 32146 806 + . . scaffold44098 GLEAN mRNA 32081 32188 0.998075 - . ID=CGI_10017695; scaffold44098 TRF Tandem_Repeat 32081 32188 105 + . . scaffold44098 GLEAN mRNA 33453 33638 0.998075 - . ID=CGI_10017695; scaffold44098 TRF Tandem_Repeat 33453 33638 103 + . . scaffold44098 GLEAN mRNA 33461 33620 0.998075 - . ID=CGI_10017695; scaffold44098 TRF Tandem_Repeat 33461 33620 119 + . . scaffold44098 GLEAN mRNA 33461 33973 0.998075 - . ID=CGI_10017695; scaffold44098 TRF Tandem_Repeat 33461 33973 187 + . . scaffold44098 GLEAN mRNA 33739 33973 0.998075 - . ID=CGI_10017695; scaffold44098 TRF Tandem_Repeat 33739 33973 301 + . . scaffold44098 GLEAN mRNA 37146 37202 0.998075 - . ID=CGI_10017695; scaffold44098 TRF Tandem_Repeat 37146 37202 60 + . . scaffold44098 GLEAN mRNA 37173 37235 0.998075 - . ID=CGI_10017695; scaffold44098 TRF Tandem_Repeat 37173 37235 63 + . . scaffold44098 GLEAN mRNA 37130 37236 0.998075 - . ID=CGI_10017695; scaffold44098 TRF Tandem_Repeat 37130 37236 79 + . . scaffold44098 GLEAN mRNA 119806 119952 0.999935 - . ID=CGI_10017702; scaffold44098 WUBlastX LINE_RTE-X 119806 119952 61 - . . scaffold44098 GLEAN mRNA 119701 119952 0.999935 - . ID=CGI_10017702; scaffold44098 WUBlastX LINE_RTE-X 119701 119952 28 - . . scaffold44098 GLEAN mRNA 135829 135957 0.999935 - . ID=CGI_10017702; scaffold44098 TRF Tandem_Repeat 135829 135957 125 + . . scaffold44098 GLEAN mRNA 166709 167257 1 + . ID=CGI_10017705; scaffold44098 WUBlastX DNA_hAT 166709 167257 161 + . . scaffold44098 GLEAN mRNA 166700 167104 1 + . ID=CGI_10017705; scaffold44098 WUBlastX DNA_hAT 166700 167104 194 + . . scaffold44098 GLEAN mRNA 164861 165169 1 + . ID=CGI_10017705; scaffold44098 WUBlastX DNA_hAT 164861 165169 114 + . . scaffold44098 GLEAN mRNA 165424 165624 1 + . ID=CGI_10017705; scaffold44098 WUBlastX DNA_hAT 165424 165624 65 + . . scaffold44098 GLEAN mRNA 194094 194237 0.544557 + . ID=CGI_10017708; scaffold44098 WUBlastX LINE_CR1 194094 194237 32 + . . scaffold44098 GLEAN mRNA 194269 195423 0.544557 + . ID=CGI_10017708; scaffold44098 WUBlastX LINE_L2 194269 195423 87 + . . scaffold44098 GLEAN mRNA 194641 195459 0.544557 + . ID=CGI_10017708; scaffold44098 WUBlastX LINE_CR1 194641 195459 476 + . . scaffold44098 GLEAN mRNA 194551 195573 0.544557 + . ID=CGI_10017708; scaffold44098 WUBlastX LINE_CR1 194551 195573 431 + . . scaffold44098 GLEAN mRNA 195545 196384 0.544557 + . ID=CGI_10017708; scaffold44098 WUBlastX LINE_CR1 195545 196384 237 + . . scaffold44098 GLEAN mRNA 202282 202328 0.544557 + . ID=CGI_10017708; scaffold44098 TRF Tandem_Repeat 202282 202328 67 + . . scaffold44098 GLEAN mRNA 202270 202340 0.544557 + . ID=CGI_10017708; scaffold44098 TRF Tandem_Repeat 202270 202340 63 + . . scaffold44098 GLEAN mRNA 202269 202332 0.544557 + . ID=CGI_10017708; scaffold44098 TRF Tandem_Repeat 202269 202332 58 + . . scaffold44098 GLEAN mRNA 238203 238356 0.554744 + . ID=CGI_10017709; scaffold44098 TRF Tandem_Repeat 238203 238356 308 + . . scaffold44098 GLEAN mRNA 238333 238787 0.554744 + . ID=CGI_10017709; scaffold44098 TRF Tandem_Repeat 238333 238787 408 + . . scaffold44098 GLEAN mRNA 238619 238958 0.554744 + . ID=CGI_10017709; scaffold44098 TRF Tandem_Repeat 238619 238958 484 + . . scaffold44098 GLEAN mRNA 238442 238987 0.554744 + . ID=CGI_10017709; scaffold44098 TRF Tandem_Repeat 238442 238987 447 + . . scaffold44098 GLEAN mRNA 238822 238987 0.554744 + . ID=CGI_10017709; scaffold44098 TRF Tandem_Repeat 238822 238987 314 + . . scaffold44098 GLEAN mRNA 240606 240865 0.554744 + . ID=CGI_10017709; scaffold44098 TRF Tandem_Repeat 240606 240865 337 + . . scaffold44098 GLEAN mRNA 262634 262792 0.444496 + . ID=CGI_10017711; scaffold44098 TRF Tandem_Repeat 262634 262792 291 + . . scaffold44098 GLEAN mRNA 262875 262912 0.444496 + . ID=CGI_10017711; scaffold44098 TRF Tandem_Repeat 262875 262912 53 + . . scaffold44098 GLEAN mRNA 263080 264726 0.444496 + . ID=CGI_10017711; scaffold44098 TRF Tandem_Repeat 263080 264726 2144 + . . scaffold44098 GLEAN mRNA 263080 264726 0.444496 + . ID=CGI_10017711; scaffold44098 TRF Tandem_Repeat 263080 264726 2230 + . . scaffold44098 GLEAN mRNA 313251 313382 0.839068 - . ID=CGI_10017713; scaffold44098 TRF Tandem_Repeat 313251 313382 219 + . . scaffold44098 GLEAN mRNA 321264 321389 0.540249 - . ID=CGI_10017714; scaffold44098 TRF Tandem_Repeat 321264 321389 145 + . . scaffold44098 GLEAN mRNA 337425 337451 0.834804 + . ID=CGI_10017715; scaffold44098 TRF Tandem_Repeat 337425 337451 54 + . . scaffold44098 GLEAN mRNA 437105 437158 0.483333 + . ID=CGI_10017721; scaffold44098 TRF Tandem_Repeat 437105 437158 108 + . . scaffold44098 GLEAN mRNA 438865 438909 0.483333 + . ID=CGI_10017721; scaffold44098 TRF Tandem_Repeat 438865 438909 90 + . . scaffold44098 GLEAN mRNA 439404 439438 0.483333 + . ID=CGI_10017721; scaffold44098 TRF Tandem_Repeat 439404 439438 70 + . . scaffold44098 GLEAN mRNA 439765 439817 0.483333 + . ID=CGI_10017721; scaffold44098 TRF Tandem_Repeat 439765 439817 88 + . . scaffold44098 GLEAN mRNA 441433 441681 0.483333 + . ID=CGI_10017721; scaffold44098 TRF Tandem_Repeat 441433 441681 336 + . . scaffold44098 GLEAN mRNA 456785 458670 0.999675 - . ID=CGI_10017723; scaffold44098 TRF Tandem_Repeat 456785 458670 939 + . . scaffold44098 GLEAN mRNA 456831 458670 0.999675 - . ID=CGI_10017723; scaffold44098 TRF Tandem_Repeat 456831 458670 2137 + . . scaffold44098 GLEAN mRNA 473360 473414 0.999615 + . ID=CGI_10017725; scaffold44098 TRF Tandem_Repeat 473360 473414 110 + . . scaffold44098 GLEAN mRNA 480675 480722 0.999615 + . ID=CGI_10017725; scaffold44098 TRF Tandem_Repeat 480675 480722 96 + . . scaffold44098 GLEAN mRNA 484068 484331 0.999615 + . ID=CGI_10017725; scaffold44098 TRF Tandem_Repeat 484068 484331 315 + . . scaffold44098 GLEAN mRNA 485802 486171 0.999615 + . ID=CGI_10017725; scaffold44098 TRF Tandem_Repeat 485802 486171 389 + . . scaffold44098 GLEAN mRNA 485802 486171 0.999615 + . ID=CGI_10017725; scaffold44098 TRF Tandem_Repeat 485802 486171 443 + . . scaffold713 GLEAN mRNA 70058 70088 0.544852 + . ID=CGI_10017737; scaffold713 TRF Tandem_Repeat 70058 70088 53 + . . scaffold713 GLEAN mRNA 70281 71203 0.544852 + . ID=CGI_10017737; scaffold713 TRF Tandem_Repeat 70281 71203 1232 + . . scaffold713 GLEAN mRNA 73112 74521 0.544852 + . ID=CGI_10017737; scaffold713 TRF Tandem_Repeat 73112 74521 1604 + . . scaffold713 GLEAN mRNA 73445 74587 0.544852 + . ID=CGI_10017737; scaffold713 TRF Tandem_Repeat 73445 74587 1190 + . . scaffold713 GLEAN mRNA 101324 101359 1 + . ID=CGI_10017740; scaffold713 TRF Tandem_Repeat 101324 101359 63 + . . scaffold713 GLEAN mRNA 117541 117585 1 - . ID=CGI_10017741; scaffold713 TRF Tandem_Repeat 117541 117585 90 + . . scaffold713 GLEAN mRNA 227027 227230 0.493889 - . ID=CGI_10017746; scaffold713 TRF Tandem_Repeat 227027 227230 311 + . . scaffold713 GLEAN mRNA 229377 229804 0.493889 - . ID=CGI_10017746; scaffold713 TRF Tandem_Repeat 229377 229804 372 + . . scaffold713 GLEAN mRNA 229396 229590 0.493889 - . ID=CGI_10017746; scaffold713 TRF Tandem_Repeat 229396 229590 54 + . . scaffold713 GLEAN mRNA 229609 230011 0.493889 - . ID=CGI_10017746; scaffold713 TRF Tandem_Repeat 229609 230011 214 + . . scaffold713 GLEAN mRNA 229519 230011 0.493889 - . ID=CGI_10017746; scaffold713 TRF Tandem_Repeat 229519 230011 225 + . . scaffold713 GLEAN mRNA 229798 230011 0.493889 - . ID=CGI_10017746; scaffold713 TRF Tandem_Repeat 229798 230011 322 + . . scaffold713 GLEAN mRNA 244897 244965 0.493889 - . ID=CGI_10017746; scaffold713 TRF Tandem_Repeat 244897 244965 111 + . . scaffold713 GLEAN mRNA 281050 281337 0.999676 - . ID=CGI_10017750; scaffold713 TRF Tandem_Repeat 281050 281337 451 + . . scaffold713 GLEAN mRNA 396852 396920 0.728047 - . ID=CGI_10017760; scaffold713 TRF Tandem_Repeat 396852 396920 57 + . . scaffold713 GLEAN mRNA 398734 398798 0.728047 - . ID=CGI_10017760; scaffold713 TRF Tandem_Repeat 398734 398798 130 + . . scaffold713 GLEAN mRNA 399406 399471 0.728047 - . ID=CGI_10017760; scaffold713 TRF Tandem_Repeat 399406 399471 69 + . . scaffold713 GLEAN mRNA 399353 399471 0.728047 - . ID=CGI_10017760; scaffold713 TRF Tandem_Repeat 399353 399471 102 + . . scaffold713 GLEAN mRNA 399490 399534 0.728047 - . ID=CGI_10017760; scaffold713 TRF Tandem_Repeat 399490 399534 72 + . . scaffold713 GLEAN mRNA 405655 405918 0.728047 - . ID=CGI_10017760; scaffold713 WUBlastX LINE_CR1-L2 405655 405918 35 - . . scaffold713 GLEAN mRNA 452463 452639 1 - . ID=CGI_10017762; scaffold713 WUBlastX LINE_RTE-X 452463 452639 86 + . . scaffold713 GLEAN mRNA 452460 452756 1 - . ID=CGI_10017762; scaffold713 WUBlastX LINE_RTE-X 452460 452756 72 + . . scaffold713 GLEAN mRNA 466699 466945 0.999675 + . ID=CGI_10017763; scaffold713 TRF Tandem_Repeat 466699 466945 381 + . . scaffold713 GLEAN mRNA 493715 493813 0.999944 + . ID=CGI_10017765; scaffold713 TRF Tandem_Repeat 493715 493813 108 + . . scaffold713 GLEAN mRNA 493749 493813 0.999944 + . ID=CGI_10017765; scaffold713 TRF Tandem_Repeat 493749 493813 85 + . . scaffold713 GLEAN mRNA 493715 493816 0.999944 + . ID=CGI_10017765; scaffold713 TRF Tandem_Repeat 493715 493816 78 + . . scaffold713 GLEAN mRNA 493715 493816 0.999944 + . ID=CGI_10017765; scaffold713 TRF Tandem_Repeat 493715 493816 78 + . . scaffold713 GLEAN mRNA 493715 493816 0.999944 + . ID=CGI_10017765; scaffold713 TRF Tandem_Repeat 493715 493816 105 + . . scaffold713 GLEAN mRNA 509916 510065 0.791417 - . ID=CGI_10017766; scaffold713 TRF Tandem_Repeat 509916 510065 162 + . . scaffold713 GLEAN mRNA 510909 511091 0.791417 - . ID=CGI_10017766; scaffold713 TRF Tandem_Repeat 510909 511091 117 + . . scaffold1650 GLEAN mRNA 13029 13421 0.647114 - . ID=CGI_10017768; scaffold1650 WUBlastX LTR_DIRS 13029 13421 112 - . . scaffold1650 GLEAN mRNA 13432 13650 0.647114 - . ID=CGI_10017768; scaffold1650 WUBlastX LTR_DIRS 13432 13650 56 - . . scaffold1650 GLEAN mRNA 31304 31380 0.991548 - . ID=CGI_10017769; scaffold1650 WUBlastX DNA_MuDR 31304 31528 112 - . . scaffold1650 GLEAN mRNA 113960 114583 0.781405 - . ID=CGI_10017772; scaffold1650 WUBlastX LINE_CR1 113960 114583 41 - . . scaffold1650 GLEAN mRNA 113636 114451 0.781405 - . ID=CGI_10017772; scaffold1650 WUBlastX LINE_L2 113636 114451 280 - . . scaffold1650 GLEAN mRNA 138190 139276 0.997617 + . ID=CGI_10017773; scaffold1650 TRF Tandem_Repeat 138190 139276 1514 + . . scaffold1650 GLEAN mRNA 149563 149604 0.997617 + . ID=CGI_10017773; scaffold1650 TRF Tandem_Repeat 149563 149604 84 + . . scaffold1650 GLEAN mRNA 174837 174885 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 174837 174885 98 + . . scaffold1650 GLEAN mRNA 178423 178849 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 178423 178849 600 + . . scaffold1650 GLEAN mRNA 182783 183316 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 182783 183316 795 + . . scaffold1650 GLEAN mRNA 182766 183316 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 182766 183316 737 + . . scaffold1650 GLEAN mRNA 188118 188219 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 188118 188219 152 + . . scaffold1650 GLEAN mRNA 189676 190325 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 189676 190325 724 + . . scaffold1650 GLEAN mRNA 190979 191211 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 190979 191211 131 + . . scaffold1650 GLEAN mRNA 192885 193954 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 192885 193954 1782 + . . scaffold1650 GLEAN mRNA 196277 196377 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 196277 196377 62 + . . scaffold1650 GLEAN mRNA 201139 201181 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 201139 201181 86 + . . scaffold1650 GLEAN mRNA 203261 203362 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 203261 203362 50 + . . scaffold1650 GLEAN mRNA 203279 203345 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 203279 203345 62 + . . scaffold1650 GLEAN mRNA 203497 203581 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 203497 203581 161 + . . scaffold1650 GLEAN mRNA 206109 206402 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 206109 206402 253 + . . scaffold1650 GLEAN mRNA 208660 208702 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 208660 208702 68 + . . scaffold1650 GLEAN mRNA 208656 208703 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 208656 208703 51 + . . scaffold1650 GLEAN mRNA 208653 208703 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 208653 208703 66 + . . scaffold1650 GLEAN mRNA 211119 211322 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 211119 211322 320 + . . scaffold1650 GLEAN mRNA 213264 213337 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 213264 213337 130 + . . scaffold1650 GLEAN mRNA 214709 215148 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 214709 215148 767 + . . scaffold1650 GLEAN mRNA 214637 215148 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 214637 215148 764 + . . scaffold1650 GLEAN mRNA 216159 216298 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 216159 216298 253 + . . scaffold1650 GLEAN mRNA 225565 225681 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 225565 225681 126 + . . scaffold1650 GLEAN mRNA 218670 219113 0.504113 - . ID=CGI_10017775; scaffold1650 WUBlastX LTR_Copia 218670 219113 30 - . . scaffold1650 GLEAN mRNA 230108 230179 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 230108 230179 108 + . . scaffold1650 GLEAN mRNA 231522 231554 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 231522 231554 57 + . . scaffold1650 GLEAN mRNA 231522 231584 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 231522 231584 63 + . . scaffold1650 GLEAN mRNA 231660 231753 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 231660 231753 84 + . . scaffold1650 GLEAN mRNA 231646 231753 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 231646 231753 78 + . . scaffold1650 GLEAN mRNA 231809 231877 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 231809 231877 106 + . . scaffold1650 GLEAN mRNA 232466 233156 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 232466 233156 1120 + . . scaffold1650 GLEAN mRNA 234547 234620 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 234547 234620 148 + . . scaffold1650 GLEAN mRNA 236159 236254 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 236159 236254 183 + . . scaffold1650 GLEAN mRNA 237662 239037 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 237662 239037 2294 + . . scaffold1650 GLEAN mRNA 239144 239461 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 239144 239461 618 + . . scaffold1650 GLEAN mRNA 243616 243743 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 243616 243743 211 + . . scaffold1650 GLEAN mRNA 244220 244307 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 244220 244307 108 + . . scaffold1650 GLEAN mRNA 249698 250100 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 249698 250100 422 + . . scaffold1650 GLEAN mRNA 250342 250688 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 250342 250688 505 + . . scaffold1650 GLEAN mRNA 250727 250810 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 250727 250810 51 + . . scaffold1650 GLEAN mRNA 266364 266544 0.789325 - . ID=CGI_10017776; scaffold1650 TRF Tandem_Repeat 266364 266544 208 + . . scaffold1650 GLEAN mRNA 272940 273038 0.789325 - . ID=CGI_10017776; scaffold1650 TRF Tandem_Repeat 272940 273038 162 + . . scaffold1650 GLEAN mRNA 273169 273206 0.789325 - . ID=CGI_10017776; scaffold1650 TRF Tandem_Repeat 273169 273206 76 + . . scaffold1650 GLEAN mRNA 276887 277045 0.789325 - . ID=CGI_10017776; scaffold1650 TRF Tandem_Repeat 276887 277045 264 + . . scaffold1650 GLEAN mRNA 270781 271131 0.789325 - . ID=CGI_10017776; scaffold1650 WUBlastX LINE_L1 270781 271131 22 - . . scaffold1650 GLEAN mRNA 350457 351332 0.999041 + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 350457 351332 372 + . . scaffold1650 GLEAN mRNA 350676 351388 0.999041 + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 350676 351388 733 + . . scaffold1650 GLEAN mRNA 350868 351388 0.999041 + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 350868 351388 634 + . . scaffold1650 GLEAN mRNA 350676 351388 0.999041 + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 350676 351388 772 + . . scaffold1650 GLEAN mRNA 351541 351689 0.999041 + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 351541 351689 94 + . . scaffold1650 GLEAN mRNA 353879 353982 0.999041 + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 353879 353982 136 + . . scaffold1650 GLEAN mRNA 353879 353982 0.999041 + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 353879 353982 136 + . . scaffold1650 GLEAN mRNA 353882 354012 0.999041 + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 353882 354012 108 + . . scaffold1650 GLEAN mRNA 353879 354016 0.999041 + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 353879 354016 145 + . . scaffold1650 GLEAN mRNA 353880 354012 0.999041 + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 353880 354012 144 + . . scaffold1650 GLEAN mRNA 353928 354016 0.999041 + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 353928 354016 73 + . . scaffold1650 GLEAN mRNA 364116 364125 0.999041 + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 364116 364175 75 + . . scaffold1650 GLEAN mRNA 379164 379226 0.813899 + . ID=CGI_10017779; scaffold1650 TRF Tandem_Repeat 379164 379226 110 + . . scaffold1650 GLEAN mRNA 379775 379863 0.813899 + . ID=CGI_10017779; scaffold1650 TRF Tandem_Repeat 379775 379863 108 + . . scaffold1650 GLEAN mRNA 384600 384633 0.87729 - . ID=CGI_10017780; scaffold1650 TRF Tandem_Repeat 384600 384633 59 + . . scaffold1650 GLEAN mRNA 460811 461488 0.937811 + . ID=CGI_10017782; scaffold1650 WUBlastX DNA_TcMar-Marin 460811 461488 140 + . . scaffold1650 GLEAN mRNA 460637 461485 0.937811 + . ID=CGI_10017782; scaffold1650 WUBlastX DNA_TcMar-Marin 460637 461485 30 + . . scaffold1518 GLEAN mRNA 57608 58224 0.557715 + . ID=CGI_10017788; scaffold1518 TRF Tandem_Repeat 57608 58224 856 + . . scaffold1518 GLEAN mRNA 66718 66749 0.557715 + . ID=CGI_10017788; scaffold1518 TRF Tandem_Repeat 66718 66749 64 + . . scaffold1518 GLEAN mRNA 73406 74112 0.557715 + . ID=CGI_10017788; scaffold1518 TRF Tandem_Repeat 73406 74112 949 + . . scaffold1518 GLEAN mRNA 75961 76206 0.557715 + . ID=CGI_10017788; scaffold1518 WUBlastX LTR_DIRS 75961 76206 129 - . . scaffold1518 GLEAN mRNA 78238 78298 0.999985 + . ID=CGI_10017789; scaffold1518 TRF Tandem_Repeat 78238 78298 122 + . . scaffold1518 GLEAN mRNA 107017 107306 0.96632 - . ID=CGI_10017792; scaffold1518 TRF Tandem_Repeat 107017 107306 221 + . . scaffold1518 GLEAN mRNA 129801 130002 0.999949 - . ID=CGI_10017794; scaffold1518 TRF Tandem_Repeat 129801 130002 147 + . . scaffold1518 GLEAN mRNA 135145 135199 0.999949 - . ID=CGI_10017794; scaffold1518 TRF Tandem_Repeat 135145 135199 110 + . . scaffold1518 GLEAN mRNA 136316 136373 0.999949 - . ID=CGI_10017794; scaffold1518 TRF Tandem_Repeat 136316 136373 116 + . . scaffold1518 GLEAN mRNA 147470 147543 0.728788 - . ID=CGI_10017795; scaffold1518 TRF Tandem_Repeat 147470 147543 94 + . . scaffold1518 GLEAN mRNA 150045 150250 0.728788 - . ID=CGI_10017795; scaffold1518 TRF Tandem_Repeat 150045 150250 349 + . . scaffold1518 GLEAN mRNA 157632 157976 0.996783 + . ID=CGI_10017796; scaffold1518 TRF Tandem_Repeat 157632 157976 573 + . . scaffold1518 GLEAN mRNA 162634 163582 0.996783 + . ID=CGI_10017796; scaffold1518 TRF Tandem_Repeat 162634 163582 791 + . . scaffold1518 GLEAN mRNA 159520 159849 0.996783 + . ID=CGI_10017796; scaffold1518 WUBlastX DNA_hAT-Tip100 159520 159849 90 + . . scaffold1518 GLEAN mRNA 159448 159714 0.996783 + . ID=CGI_10017796; scaffold1518 WUBlastX DNA_hAT-Tip100 159448 159714 63 + . . scaffold1518 GLEAN mRNA 159499 159732 0.996783 + . ID=CGI_10017796; scaffold1518 WUBlastX DNA_hAT-Tip100 159499 159732 181 + . . scaffold1518 GLEAN mRNA 162589 164300 0.996783 + . ID=CGI_10017796; scaffold1518 TRF Tandem_Repeat 162589 164300 479 + . . scaffold1518 GLEAN mRNA 162593 164294 0.996783 + . ID=CGI_10017796; scaffold1518 TRF Tandem_Repeat 162593 164294 1052 + . . scaffold1518 GLEAN mRNA 162580 164308 0.996783 + . ID=CGI_10017796; scaffold1518 TRF Tandem_Repeat 162580 164308 1125 + . . scaffold1518 GLEAN mRNA 174922 174956 0.996774 + . ID=CGI_10017797; scaffold1518 TRF Tandem_Repeat 174922 174956 70 + . . scaffold1518 GLEAN mRNA 176647 176793 0.996774 + . ID=CGI_10017797; scaffold1518 TRF Tandem_Repeat 176647 176793 213 + . . scaffold1518 GLEAN mRNA 210456 210520 0.999512 + . ID=CGI_10017800; scaffold1518 TRF Tandem_Repeat 210456 210520 103 + . . scaffold1518 GLEAN mRNA 210459 210520 0.999512 + . ID=CGI_10017800; scaffold1518 TRF Tandem_Repeat 210459 210520 115 + . . scaffold1518 GLEAN mRNA 210560 211144 0.999512 + . ID=CGI_10017800; scaffold1518 WUBlastX LINE_Penelope 210560 211144 39 + . . scaffold1518 GLEAN mRNA 264392 264417 0.241996 + . ID=CGI_10017803; scaffold1518 TRF Tandem_Repeat 264392 264417 52 + . . scaffold1518 GLEAN mRNA 275443 275500 0.241996 + . ID=CGI_10017803; scaffold1518 TRF Tandem_Repeat 275443 275500 82 + . . scaffold1518 GLEAN mRNA 268905 269555 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LTR_Ngaro 268905 269555 205 - . . scaffold1518 GLEAN mRNA 271069 271848 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LTR_Ngaro 271069 271848 190 - . . scaffold1518 GLEAN mRNA 271081 271491 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LTR_Ngaro 271081 271491 195 - . . scaffold1518 GLEAN mRNA 269519 270628 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LTR_Ngaro 269519 270628 704 - . . scaffold1518 GLEAN mRNA 270928 271764 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LTR_Ngaro 270928 271764 162 - . . scaffold1518 GLEAN mRNA 268615 268911 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LTR_Ngaro 268615 268911 142 - . . scaffold1518 GLEAN mRNA 270637 270702 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LTR_Ngaro 270637 270702 22 - . . scaffold1518 GLEAN mRNA 286024 286734 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LINE_L2 286024 286734 323 + . . scaffold1518 GLEAN mRNA 286682 287104 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LINE_L2 286682 287965 721 + . . scaffold1518 GLEAN mRNA 285447 285980 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LINE_L2 285447 285980 85 + . . scaffold1518 GLEAN mRNA 285648 285986 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LINE_L2 285648 285986 103 + . . scaffold1518 GLEAN mRNA 286742 287104 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LINE_L2 286742 288223 712 + . . scaffold1518 GLEAN mRNA 285771 285986 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LINE_L2 285771 285986 107 + . . scaffold1518 GLEAN mRNA 285585 285983 0.241996 + . ID=CGI_10017803; scaffold1518 WUBlastX LINE_L2 285585 285983 100 + . . scaffold1518 GLEAN mRNA 302983 303087 0.998908 + . ID=CGI_10017805; scaffold1518 TRF Tandem_Repeat 302983 303087 65 + . . scaffold1518 GLEAN mRNA 303002 303106 0.998908 + . ID=CGI_10017805; scaffold1518 TRF Tandem_Repeat 303002 303106 74 + . . scaffold1518 GLEAN mRNA 307117 307164 0.998908 + . ID=CGI_10017805; scaffold1518 TRF Tandem_Repeat 307117 307164 96 + . . scaffold1518 GLEAN mRNA 330663 330693 0.999676 + . ID=CGI_10017806; scaffold1518 TRF Tandem_Repeat 330663 330693 53 + . . scaffold1518 GLEAN mRNA 341754 342068 0.999676 + . ID=CGI_10017806; scaffold1518 TRF Tandem_Repeat 341754 342068 537 + . . scaffold1518 GLEAN mRNA 360132 360275 1 + . ID=CGI_10017807; scaffold1518 TRF Tandem_Repeat 360132 360275 163 + . . scaffold1518 GLEAN mRNA 360345 360528 1 + . ID=CGI_10017807; scaffold1518 TRF Tandem_Repeat 360345 360528 260 + . . scaffold1518 GLEAN mRNA 381568 381601 0.999999 - . ID=CGI_10017809; scaffold1518 TRF Tandem_Repeat 381568 381601 68 + . . scaffold1518 GLEAN mRNA 409829 409890 0.979077 - . ID=CGI_10017811; scaffold1518 TRF Tandem_Repeat 409829 409890 124 + . . scaffold1518 GLEAN mRNA 422444 422941 0.991637 - . ID=CGI_10017813; scaffold1518 WUBlastX LINE_L1 422444 422941 53 - . . scaffold1518 GLEAN mRNA 425838 426292 0.991637 - . ID=CGI_10017813; scaffold1518 TRF Tandem_Repeat 425838 426292 574 + . . scaffold1518 GLEAN mRNA 425838 426292 0.991637 - . ID=CGI_10017813; scaffold1518 TRF Tandem_Repeat 425838 426292 578 + . . scaffold1518 GLEAN mRNA 455984 456387 0.622487 + . ID=CGI_10017815; scaffold1518 TRF Tandem_Repeat 455984 456387 497 + . . scaffold1518 GLEAN mRNA 455984 456387 0.622487 + . ID=CGI_10017815; scaffold1518 TRF Tandem_Repeat 455984 456387 479 + . . scaffold1518 GLEAN mRNA 455985 456383 0.622487 + . ID=CGI_10017815; scaffold1518 TRF Tandem_Repeat 455985 456383 526 + . . scaffold1518 GLEAN mRNA 456555 456592 0.622487 + . ID=CGI_10017815; scaffold1518 TRF Tandem_Repeat 456555 456592 76 + . . scaffold1518 GLEAN mRNA 466593 467307 0.622487 + . ID=CGI_10017815; scaffold1518 TRF Tandem_Repeat 466593 467307 1053 + . . scaffold1518 GLEAN mRNA 467730 467927 0.622487 + . ID=CGI_10017815; scaffold1518 WUBlastX LTR_DIRS 467730 467927 106 - . . scaffold1518 GLEAN mRNA 467930 468136 0.622487 + . ID=CGI_10017815; scaffold1518 WUBlastX LTR_DIRS 467930 468136 50 - . . scaffold1518 GLEAN mRNA 485282 485355 0.99294 - . ID=CGI_10017816; scaffold1518 TRF Tandem_Repeat 485282 485355 53 + . . scaffold1518 GLEAN mRNA 492976 493466 0.999281 - . ID=CGI_10017817; scaffold1518 TRF Tandem_Repeat 492976 493466 504 + . . scaffold1077 GLEAN mRNA 111959 112081 0.972659 + . ID=CGI_10017824; scaffold1077 TRF Tandem_Repeat 111959 112081 80 + . . scaffold1077 GLEAN mRNA 111975 112097 0.972659 + . ID=CGI_10017824; scaffold1077 TRF Tandem_Repeat 111975 112097 176 + . . scaffold1077 GLEAN mRNA 113651 113681 0.972659 + . ID=CGI_10017824; scaffold1077 TRF Tandem_Repeat 113651 113681 53 + . . scaffold1077 GLEAN mRNA 115355 115535 0.972659 + . ID=CGI_10017824; scaffold1077 TRF Tandem_Repeat 115355 115535 265 + . . scaffold1077 GLEAN mRNA 119534 119609 0.972659 + . ID=CGI_10017824; scaffold1077 TRF Tandem_Repeat 119534 119609 116 + . . scaffold1077 GLEAN mRNA 360264 360303 0.82291 + . ID=CGI_10017829; scaffold1077 TRF Tandem_Repeat 360264 360303 59 + . . scaffold1077 GLEAN mRNA 347420 351349 0.82291 + . ID=CGI_10017829; scaffold1077 WUBlastX LTR_Gypsy 347420 351349 2705 + . . scaffold1077 GLEAN mRNA 365091 365366 0.82291 + . ID=CGI_10017829; scaffold1077 WUBlastX DNA_Kolobok-IS4 365091 365366 101 - . . scaffold1077 GLEAN mRNA 390209 390254 0.296665 + . ID=CGI_10017830; scaffold1077 TRF Tandem_Repeat 390209 390254 92 + . . scaffold1077 GLEAN mRNA 392066 392090 0.296665 + . ID=CGI_10017830; scaffold1077 TRF Tandem_Repeat 392066 392090 50 + . . scaffold1077 GLEAN mRNA 393723 393768 0.296665 + . ID=CGI_10017830; scaffold1077 TRF Tandem_Repeat 393723 393768 65 + . . scaffold72 GLEAN mRNA 14443 14490 0.999999 + . ID=CGI_10017833; scaffold72 TRF Tandem_Repeat 14443 14490 60 + . . scaffold72 GLEAN mRNA 34158 34327 0.999696 - . ID=CGI_10017835; scaffold72 TRF Tandem_Repeat 34158 34327 134 + . . scaffold72 GLEAN mRNA 130165 130909 0.558395 + . ID=CGI_10017836; scaffold72 TRF Tandem_Repeat 130165 130909 1271 + . . scaffold72 GLEAN mRNA 149718 149780 0.999415 + . ID=CGI_10017838; scaffold72 TRF Tandem_Repeat 149718 149780 117 + . . scaffold72 GLEAN mRNA 157967 158533 0.999415 + . ID=CGI_10017838; scaffold72 WUBlastX LINE_RTE-BovB 157967 158533 276 - . . scaffold72 GLEAN mRNA 158535 159197 0.999415 + . ID=CGI_10017838; scaffold72 WUBlastX LINE_RTE-BovB 158535 159197 588 - . . scaffold72 GLEAN mRNA 154246 154458 0.999415 + . ID=CGI_10017838; scaffold72 WUBlastX LINE_RTE-X 154246 154458 26 + . . scaffold72 GLEAN mRNA 158535 159362 0.999415 + . ID=CGI_10017838; scaffold72 WUBlastX LINE_RTE-BovB 158535 159362 345 - . . scaffold72 GLEAN mRNA 195422 195543 0.937847 - . ID=CGI_10017840; scaffold72 TRF Tandem_Repeat 195422 195543 190 + . . scaffold72 GLEAN mRNA 195425 195579 0.937847 - . ID=CGI_10017840; scaffold72 TRF Tandem_Repeat 195425 195579 103 + . . scaffold72 GLEAN mRNA 195747 195940 0.937847 - . ID=CGI_10017840; scaffold72 TRF Tandem_Repeat 195747 195940 262 + . . scaffold72 GLEAN mRNA 195767 196266 0.937847 - . ID=CGI_10017840; scaffold72 TRF Tandem_Repeat 195767 196266 589 + . . scaffold72 GLEAN mRNA 195841 195922 0.937847 - . ID=CGI_10017840; scaffold72 TRF Tandem_Repeat 195841 195922 64 + . . scaffold72 GLEAN mRNA 197919 198387 0.937847 - . ID=CGI_10017840; scaffold72 TRF Tandem_Repeat 197919 198387 508 + . . scaffold72 GLEAN mRNA 209326 209430 0.998726 - . ID=CGI_10017841; scaffold72 WUBlastX DNA_TcMar-Marin 209326 209430 21 + . . scaffold72 GLEAN mRNA 209739 210272 0.998726 - . ID=CGI_10017841; scaffold72 WUBlastX DNA_TcMar-Marin 209739 210272 121 + . . scaffold72 GLEAN mRNA 209622 210272 0.998726 - . ID=CGI_10017841; scaffold72 WUBlastX DNA_TcMar-Marin 209622 210272 112 + . . scaffold72 GLEAN mRNA 349772 349875 0.999999 - . ID=CGI_10017845; scaffold72 TRF Tandem_Repeat 349772 349875 199 + . . scaffold72 GLEAN mRNA 470575 470739 0.990886 + . ID=CGI_10017848; scaffold72 WUBlastX LINE_RTE-X 470575 470739 39 - . . scaffold675 GLEAN mRNA 6673 6716 0.615405 + . ID=CGI_10017852; scaffold675 TRF Tandem_Repeat 6673 6716 54 + . . scaffold675 GLEAN mRNA 8971 9007 0.615405 + . ID=CGI_10017852; scaffold675 TRF Tandem_Repeat 8971 9007 74 + . . scaffold675 GLEAN mRNA 38272 38379 0.967666 + . ID=CGI_10017853; scaffold675 TRF Tandem_Repeat 38272 38379 216 + . . scaffold675 GLEAN mRNA 110863 111496 0.999611 - . ID=CGI_10017856; scaffold675 TRF Tandem_Repeat 110863 111496 416 + . . scaffold675 GLEAN mRNA 111117 111753 0.999611 - . ID=CGI_10017856; scaffold675 TRF Tandem_Repeat 111117 111753 829 + . . scaffold675 GLEAN mRNA 111117 111753 0.999611 - . ID=CGI_10017856; scaffold675 TRF Tandem_Repeat 111117 111753 804 + . . scaffold675 GLEAN mRNA 110914 111753 0.999611 - . ID=CGI_10017856; scaffold675 TRF Tandem_Repeat 110914 111753 757 + . . scaffold675 GLEAN mRNA 115809 115958 0.999611 - . ID=CGI_10017856; scaffold675 WUBlastX DNA_TcMar-Marin 115809 115958 42 - . . scaffold675 GLEAN mRNA 115406 115804 0.999611 - . ID=CGI_10017856; scaffold675 WUBlastX DNA_TcMar-Marin 115406 115804 80 - . . scaffold675 GLEAN mRNA 115319 115567 0.999611 - . ID=CGI_10017856; scaffold675 WUBlastX DNA_TcMar-Marin 115319 115567 62 - . . scaffold675 GLEAN mRNA 115942 116193 0.999611 - . ID=CGI_10017856; scaffold675 WUBlastX DNA_TcMar-Marin 115942 116193 46 - . . scaffold675 GLEAN mRNA 129373 129405 0.666998 + . ID=CGI_10017857; scaffold675 TRF Tandem_Repeat 129373 129405 66 + . . scaffold675 GLEAN mRNA 132542 132583 0.666998 + . ID=CGI_10017857; scaffold675 TRF Tandem_Repeat 132542 132583 50 + . . scaffold675 GLEAN mRNA 134553 136260 0.666998 + . ID=CGI_10017857; scaffold675 TRF Tandem_Repeat 134553 136260 2200 + . . scaffold675 GLEAN mRNA 134553 136278 0.666998 + . ID=CGI_10017857; scaffold675 TRF Tandem_Repeat 134553 136278 2296 + . . scaffold675 GLEAN mRNA 171247 171285 0.999283 + . ID=CGI_10017860; scaffold675 TRF Tandem_Repeat 171247 171285 51 + . . scaffold675 GLEAN mRNA 192850 193103 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 192850 193103 395 + . . scaffold675 GLEAN mRNA 193831 194443 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 193831 194443 593 + . . scaffold675 GLEAN mRNA 193827 194411 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 193827 194411 369 + . . scaffold675 GLEAN mRNA 193853 194443 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 193853 194443 143 + . . scaffold675 GLEAN mRNA 193829 193979 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 193829 193979 90 + . . scaffold675 GLEAN mRNA 193934 194294 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 193934 194294 252 + . . scaffold675 GLEAN mRNA 194317 194436 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 194317 194436 83 + . . scaffold675 GLEAN mRNA 197027 197370 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 197027 197370 431 + . . scaffold675 GLEAN mRNA 198384 198702 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 198384 198702 251 + . . scaffold675 GLEAN mRNA 198384 198712 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 198384 198712 380 + . . scaffold675 GLEAN mRNA 202195 202254 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 202195 202254 120 + . . scaffold675 GLEAN mRNA 203097 203713 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 203097 203713 787 + . . scaffold675 GLEAN mRNA 208043 208228 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 208043 208228 342 + . . scaffold675 GLEAN mRNA 217610 218083 0.996437 + . ID=CGI_10017862; scaffold675 TRF Tandem_Repeat 217610 218083 208 + . . scaffold675 GLEAN mRNA 218297 218474 0.996437 + . ID=CGI_10017862; scaffold675 TRF Tandem_Repeat 218297 218474 284 + . . scaffold675 GLEAN mRNA 219899 219978 0.996437 + . ID=CGI_10017862; scaffold675 TRF Tandem_Repeat 219899 219978 82 + . . scaffold675 GLEAN mRNA 219863 219978 0.996437 + . ID=CGI_10017862; scaffold675 TRF Tandem_Repeat 219863 219978 118 + . . scaffold675 GLEAN mRNA 219863 219969 0.996437 + . ID=CGI_10017862; scaffold675 TRF Tandem_Repeat 219863 219969 105 + . . scaffold675 GLEAN mRNA 267527 270020 0.996256 + . ID=CGI_10017864; scaffold675 TRF Tandem_Repeat 267527 270020 3308 + . . scaffold675 GLEAN mRNA 261367 262721 0.996256 + . ID=CGI_10017864; scaffold675 TRF Tandem_Repeat 261367 262721 2112 + . . scaffold675 GLEAN mRNA 306131 306169 0.999954 - . ID=CGI_10017866; scaffold675 TRF Tandem_Repeat 306131 306169 78 + . . scaffold675 GLEAN mRNA 320938 320968 0.999676 + . ID=CGI_10017868; scaffold675 TRF Tandem_Repeat 320938 320968 62 + . . scaffold675 GLEAN mRNA 338332 338424 0.550311 + . ID=CGI_10017869; scaffold675 TRF Tandem_Repeat 338332 338424 168 + . . scaffold675 GLEAN mRNA 338446 338484 0.550311 + . ID=CGI_10017869; scaffold675 TRF Tandem_Repeat 338446 338484 78 + . . scaffold675 GLEAN mRNA 339441 340249 0.550311 + . ID=CGI_10017869; scaffold675 TRF Tandem_Repeat 339441 340249 498 + . . scaffold675 GLEAN mRNA 339516 340244 0.550311 + . ID=CGI_10017869; scaffold675 TRF Tandem_Repeat 339516 340244 648 + . . scaffold675 GLEAN mRNA 339514 340244 0.550311 + . ID=CGI_10017869; scaffold675 TRF Tandem_Repeat 339514 340244 812 + . . scaffold675 GLEAN mRNA 351609 351658 0.550311 + . ID=CGI_10017869; scaffold675 TRF Tandem_Repeat 351609 351658 64 + . . scaffold675 GLEAN mRNA 351604 351651 0.550311 + . ID=CGI_10017869; scaffold675 TRF Tandem_Repeat 351604 351651 78 + . . scaffold675 GLEAN mRNA 351682 352642 0.550311 + . ID=CGI_10017869; scaffold675 TRF Tandem_Repeat 351682 352642 1439 + . . scaffold675 GLEAN mRNA 371751 371866 0.777737 - . ID=CGI_10017871; scaffold675 TRF Tandem_Repeat 371751 371866 130 + . . scaffold675 GLEAN mRNA 371751 371866 0.777737 - . ID=CGI_10017871; scaffold675 TRF Tandem_Repeat 371751 371866 171 + . . scaffold675 GLEAN mRNA 378118 378153 0.777737 - . ID=CGI_10017871; scaffold675 TRF Tandem_Repeat 378118 378153 72 + . . scaffold675 GLEAN mRNA 379062 379377 0.777737 - . ID=CGI_10017871; scaffold675 TRF Tandem_Repeat 379062 379377 362 + . . scaffold675 GLEAN mRNA 465806 465854 0.413814 - . ID=CGI_10017873; scaffold675 TRF Tandem_Repeat 465806 465854 98 + . . scaffold675 GLEAN mRNA 486595 486672 0.413814 - . ID=CGI_10017873; scaffold675 TRF Tandem_Repeat 486595 486672 147 + . . scaffold675 GLEAN mRNA 508709 508745 0.912888 - . ID=CGI_10017875; scaffold675 TRF Tandem_Repeat 508709 508745 67 + . . scaffold1541 GLEAN mRNA 22943 22969 0.999675 + . ID=CGI_10017876; scaffold1541 TRF Tandem_Repeat 22943 22969 54 + . . scaffold1541 GLEAN mRNA 34719 35621 0.999675 + . ID=CGI_10017876; scaffold1541 WUBlastX DNA_TcMar-Tc1 34719 35621 252 - . . scaffold1541 GLEAN mRNA 47300 47335 0.865984 - . ID=CGI_10017878; scaffold1541 TRF Tandem_Repeat 47300 47335 72 + . . scaffold1541 GLEAN mRNA 67208 67263 0.990697 - . ID=CGI_10017880; scaffold1541 TRF Tandem_Repeat 67208 67263 112 + . . scaffold1541 GLEAN mRNA 69705 69779 0.990697 - . ID=CGI_10017880; scaffold1541 TRF Tandem_Repeat 69705 69779 141 + . . scaffold1541 GLEAN mRNA 81439 81464 0.923273 - . ID=CGI_10017881; scaffold1541 TRF Tandem_Repeat 81439 81464 52 + . . scaffold1541 GLEAN mRNA 81467 81595 0.923273 - . ID=CGI_10017881; scaffold1541 TRF Tandem_Repeat 81467 81595 124 + . . scaffold1541 GLEAN mRNA 81474 81575 0.923273 - . ID=CGI_10017881; scaffold1541 TRF Tandem_Repeat 81474 81575 64 + . . scaffold1541 GLEAN mRNA 111391 111438 1 + . ID=CGI_10017882; scaffold1541 TRF Tandem_Repeat 111391 111438 96 + . . scaffold1541 GLEAN mRNA 112835 112920 1 + . ID=CGI_10017882; scaffold1541 TRF Tandem_Repeat 112835 112920 93 + . . scaffold1541 GLEAN mRNA 142186 142355 0.998719 - . ID=CGI_10017884; scaffold1541 TRF Tandem_Repeat 142186 142355 73 + . . scaffold1541 GLEAN mRNA 142198 142262 0.998719 - . ID=CGI_10017884; scaffold1541 TRF Tandem_Repeat 142198 142262 53 + . . scaffold1541 GLEAN mRNA 142243 142357 0.998719 - . ID=CGI_10017884; scaffold1541 TRF Tandem_Repeat 142243 142357 97 + . . scaffold1541 GLEAN mRNA 205490 205822 0.933811 - . ID=CGI_10017888; scaffold1541 TRF Tandem_Repeat 205490 205822 330 + . . scaffold1541 GLEAN mRNA 205492 205735 0.933811 - . ID=CGI_10017888; scaffold1541 TRF Tandem_Repeat 205492 205735 245 + . . scaffold1541 GLEAN mRNA 214273 214341 0.933811 - . ID=CGI_10017888; scaffold1541 TRF Tandem_Repeat 214273 214341 138 + . . scaffold1541 GLEAN mRNA 217111 217210 0.933811 - . ID=CGI_10017888; scaffold1541 TRF Tandem_Repeat 217111 217210 119 + . . scaffold1541 GLEAN mRNA 228325 228362 0.933811 - . ID=CGI_10017888; scaffold1541 TRF Tandem_Repeat 228325 228362 76 + . . scaffold1541 GLEAN mRNA 222611 223153 0.933811 - . ID=CGI_10017888; scaffold1541 WUBlastX LTR_ERV1 222611 223153 53 + . . scaffold1541 GLEAN mRNA 231543 231582 0.933811 - . ID=CGI_10017888; scaffold1541 TRF Tandem_Repeat 231543 231582 53 + . . scaffold1541 GLEAN mRNA 214273 214341 0.995858 + . ID=CGI_10017889; scaffold1541 TRF Tandem_Repeat 214273 214341 138 + . . scaffold1541 GLEAN mRNA 217111 217210 0.995858 + . ID=CGI_10017889; scaffold1541 TRF Tandem_Repeat 217111 217210 119 + . . scaffold1541 GLEAN mRNA 222611 223153 0.981532 + . ID=CGI_10017890; scaffold1541 WUBlastX LTR_ERV1 222611 223153 53 + . . scaffold1541 GLEAN mRNA 293044 293076 0.398723 + . ID=CGI_10017892; scaffold1541 TRF Tandem_Repeat 293044 293076 66 + . . scaffold1541 GLEAN mRNA 295154 295202 0.398723 + . ID=CGI_10017892; scaffold1541 TRF Tandem_Repeat 295154 295202 98 + . . scaffold1541 GLEAN mRNA 295345 295423 0.398723 + . ID=CGI_10017892; scaffold1541 TRF Tandem_Repeat 295345 295423 151 + . . scaffold1541 GLEAN mRNA 308740 308802 1 + . ID=CGI_10017893; scaffold1541 TRF Tandem_Repeat 308740 308802 117 + . . scaffold1541 GLEAN mRNA 331626 331683 0.984217 + . ID=CGI_10017895; scaffold1541 TRF Tandem_Repeat 331626 331683 116 + . . scaffold1541 GLEAN mRNA 342196 342241 0.984217 + . ID=CGI_10017895; scaffold1541 TRF Tandem_Repeat 342196 342241 83 + . . scaffold1541 GLEAN mRNA 343452 343509 0.984217 + . ID=CGI_10017895; scaffold1541 TRF Tandem_Repeat 343452 343509 116 + . . scaffold1541 GLEAN mRNA 338891 339055 0.984217 + . ID=CGI_10017895; scaffold1541 WUBlastX DNA_TcMar-Marin 338891 339055 29 + . . scaffold1541 GLEAN mRNA 339221 339271 0.984217 + . ID=CGI_10017895; scaffold1541 WUBlastX DNA_TcMar-Marin 339221 339271 29 + . . scaffold1541 GLEAN mRNA 339440 339610 0.984217 + . ID=CGI_10017895; scaffold1541 WUBlastX DNA_TcMar-Marin 339440 339610 29 + . . scaffold1541 GLEAN mRNA 345458 345491 0.984217 + . ID=CGI_10017895; scaffold1541 TRF Tandem_Repeat 345458 345491 59 + . . scaffold1541 GLEAN mRNA 375270 375413 0.999999 - . ID=CGI_10017897; scaffold1541 WUBlastX DNA_hAT-Tip100 375270 375413 75 - . . scaffold1541 GLEAN mRNA 446065 446098 0.998727 - . ID=CGI_10017899; scaffold1541 TRF Tandem_Repeat 446065 446098 68 + . . scaffold1541 GLEAN mRNA 446343 446478 0.998727 - . ID=CGI_10017899; scaffold1541 TRF Tandem_Repeat 446343 446478 156 + . . scaffold1541 GLEAN mRNA 446343 446478 0.998727 - . ID=CGI_10017899; scaffold1541 TRF Tandem_Repeat 446343 446478 184 + . . scaffold1541 GLEAN mRNA 447046 447091 0.998727 - . ID=CGI_10017899; scaffold1541 TRF Tandem_Repeat 447046 447091 92 + . . scaffold1541 GLEAN mRNA 471286 471387 0.864419 + . ID=CGI_10017901; scaffold1541 WUBlastX DNA_hAT-Tip100 471286 471387 27 + . . scaffold1541 GLEAN mRNA 470187 470270 0.864419 + . ID=CGI_10017901; scaffold1541 WUBlastX DNA_hAT-Tip100 470187 470270 26 + . . scaffold1866 GLEAN mRNA 16769 16798 0.446765 - . ID=CGI_10017902; scaffold1866 TRF Tandem_Repeat 16769 16798 51 + . . scaffold1866 GLEAN mRNA 16769 16832 0.446765 - . ID=CGI_10017902; scaffold1866 TRF Tandem_Repeat 16769 16832 74 + . . scaffold1866 GLEAN mRNA 16788 16832 0.446765 - . ID=CGI_10017902; scaffold1866 TRF Tandem_Repeat 16788 16832 63 + . . scaffold1866 GLEAN mRNA 17022 17051 0.446765 - . ID=CGI_10017902; scaffold1866 TRF Tandem_Repeat 17022 17051 60 + . . scaffold1866 GLEAN mRNA 32860 33545 0.446765 - . ID=CGI_10017902; scaffold1866 TRF Tandem_Repeat 32860 33545 1088 + . . scaffold1866 GLEAN mRNA 45851 47124 0.446765 - . ID=CGI_10017902; scaffold1866 TRF Tandem_Repeat 45851 47124 1515 + . . scaffold1866 GLEAN mRNA 102568 102618 0.648545 + . ID=CGI_10017905; scaffold1866 TRF Tandem_Repeat 102568 102618 84 + . . scaffold1866 GLEAN mRNA 102629 103465 0.648545 + . ID=CGI_10017905; scaffold1866 TRF Tandem_Repeat 102629 103465 1096 + . . scaffold1866 GLEAN mRNA 110836 110869 0.999676 + . ID=CGI_10017906; scaffold1866 TRF Tandem_Repeat 110836 110869 68 + . . scaffold1866 GLEAN mRNA 207955 208003 0.769721 - . ID=CGI_10017910; scaffold1866 TRF Tandem_Repeat 207955 208003 98 + . . scaffold1866 GLEAN mRNA 204700 204792 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_CR1 204700 204792 20 + . . scaffold1866 GLEAN mRNA 206893 207615 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_CR1-L2 206893 207615 66 + . . scaffold1866 GLEAN mRNA 206085 206840 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_CR1-L2 206085 206840 175 + . . scaffold1866 GLEAN mRNA 207088 207774 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_CR1-L2 207088 207774 133 + . . scaffold1866 GLEAN mRNA 204724 204993 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_L2 204724 204993 52 + . . scaffold1866 GLEAN mRNA 204721 204900 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_L2 204721 204900 73 + . . scaffold1866 GLEAN mRNA 205960 206106 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_CR1 205960 206106 34 + . . scaffold1866 GLEAN mRNA 205703 205906 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_CR1-L2 205703 205906 31 + . . scaffold1866 GLEAN mRNA 206409 206852 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_CR1-L2 206409 206852 203 + . . scaffold1866 GLEAN mRNA 204724 204933 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_L2 204724 204933 54 + . . scaffold1866 GLEAN mRNA 225419 225451 0.990768 - . ID=CGI_10017911; scaffold1866 TRF Tandem_Repeat 225419 225451 66 + . . scaffold1866 GLEAN mRNA 225114 225218 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_CR1 225114 225218 29 + . . scaffold1866 GLEAN mRNA 223802 223885 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_Rex-Babar 223802 223885 27 + . . scaffold1866 GLEAN mRNA 222811 223035 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_L2 222811 223035 34 + . . scaffold1866 GLEAN mRNA 224171 224557 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_CR1-L2 224171 224557 158 + . . scaffold1866 GLEAN mRNA 222865 223134 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_L2 222865 223134 52 + . . scaffold1866 GLEAN mRNA 224943 225191 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_CR1-L2 224943 225191 86 + . . scaffold1866 GLEAN mRNA 223858 224175 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_CR1 223858 224175 40 + . . scaffold1866 GLEAN mRNA 224267 224557 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_CR1-L2 224267 224557 172 + . . scaffold1866 GLEAN mRNA 223470 223682 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_CR1-L2 223470 223682 47 + . . scaffold1866 GLEAN mRNA 223509 223724 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_L2 223509 223724 24 + . . scaffold1866 GLEAN mRNA 222862 223041 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_L2 222862 223041 80 + . . scaffold1866 GLEAN mRNA 224279 224623 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_I 224279 224623 59 + . . scaffold1866 GLEAN mRNA 222850 223080 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_L2 222850 223080 63 + . . scaffold1866 GLEAN mRNA 224610 225188 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_L2 224610 225188 64 + . . scaffold1866 GLEAN mRNA 221135 221407 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_L2 221135 221407 42 - . . scaffold1866 GLEAN mRNA 221201 221419 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_CR1-L2 221201 221419 133 - . . scaffold1866 GLEAN mRNA 223930 224184 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_CR1 223930 224184 64 + . . scaffold1866 GLEAN mRNA 247420 247743 0.651094 - . ID=CGI_10017912; scaffold1866 WUBlastX LINE_CR1-L2 247420 247743 118 - . . scaffold1866 GLEAN mRNA 247196 247471 0.651094 - . ID=CGI_10017912; scaffold1866 WUBlastX LINE_CR1-L2 247196 247471 94 - . . scaffold1866 GLEAN mRNA 247746 248012 0.651094 - . ID=CGI_10017912; scaffold1866 WUBlastX LINE_CR1-L2 247746 248012 117 - . . scaffold1866 GLEAN mRNA 394916 394969 0.999676 - . ID=CGI_10017921; scaffold1866 TRF Tandem_Repeat 394916 394969 108 + . . scaffold1866 GLEAN mRNA 439237 439271 0.499725 - . ID=CGI_10017924; scaffold1866 TRF Tandem_Repeat 439237 439271 70 + . . scaffold1866 GLEAN mRNA 453663 453721 1 + . ID=CGI_10017926; scaffold1866 TRF Tandem_Repeat 453663 453721 118 + . . scaffold1866 GLEAN mRNA 516108 516260 0.879129 - . ID=CGI_10017928; scaffold1866 TRF Tandem_Repeat 516108 516260 234 + . . scaffold1866 GLEAN mRNA 518377 518407 0.879129 - . ID=CGI_10017928; scaffold1866 TRF Tandem_Repeat 518377 518407 62 + . . scaffold1866 GLEAN mRNA 518407 518446 0.879129 - . ID=CGI_10017928; scaffold1866 TRF Tandem_Repeat 518407 518446 80 + . . scaffold1866 GLEAN mRNA 518556 518641 0.879129 - . ID=CGI_10017928; scaffold1866 TRF Tandem_Repeat 518556 518641 136 + . . scaffold1866 GLEAN mRNA 519292 519327 0.879129 - . ID=CGI_10017928; scaffold1866 TRF Tandem_Repeat 519292 519327 72 + . . scaffold1521 GLEAN mRNA 13218 13251 0.761411 + . ID=CGI_10017929; scaffold1521 TRF Tandem_Repeat 13218 13251 68 + . . scaffold1521 GLEAN mRNA 72251 72463 0.54097 + . ID=CGI_10017931; scaffold1521 TRF Tandem_Repeat 72251 72463 204 + . . scaffold1521 GLEAN mRNA 82712 83496 0.54097 + . ID=CGI_10017931; scaffold1521 TRF Tandem_Repeat 82712 83496 1115 + . . scaffold1521 GLEAN mRNA 65510 66590 0.54097 + . ID=CGI_10017931; scaffold1521 TRF Tandem_Repeat 65510 66590 1526 + . . scaffold1521 GLEAN mRNA 139529 139565 0.840333 - . ID=CGI_10017933; scaffold1521 TRF Tandem_Repeat 139529 139565 74 + . . scaffold1521 GLEAN mRNA 140520 140854 0.840333 - . ID=CGI_10017933; scaffold1521 TRF Tandem_Repeat 140520 140854 439 + . . scaffold1521 GLEAN mRNA 140511 140836 0.840333 - . ID=CGI_10017933; scaffold1521 TRF Tandem_Repeat 140511 140836 197 + . . scaffold1521 GLEAN mRNA 176872 176957 0.897399 - . ID=CGI_10017935; scaffold1521 TRF Tandem_Repeat 176872 176957 172 + . . scaffold1521 GLEAN mRNA 194735 194860 0.999668 + . ID=CGI_10017937; scaffold1521 TRF Tandem_Repeat 194735 194860 110 + . . scaffold1521 GLEAN mRNA 198862 198905 0.999668 + . ID=CGI_10017937; scaffold1521 TRF Tandem_Repeat 198862 198905 88 + . . scaffold1521 GLEAN mRNA 204305 204330 0.999668 + . ID=CGI_10017937; scaffold1521 TRF Tandem_Repeat 204305 204330 52 + . . scaffold1521 GLEAN mRNA 204495 204520 0.999668 + . ID=CGI_10017937; scaffold1521 TRF Tandem_Repeat 204495 204520 52 + . . scaffold1521 GLEAN mRNA 206132 206167 0.999668 + . ID=CGI_10017937; scaffold1521 TRF Tandem_Repeat 206132 206167 72 + . . scaffold1521 GLEAN mRNA 218583 218643 0.482046 + . ID=CGI_10017939; scaffold1521 TRF Tandem_Repeat 218583 218643 108 + . . scaffold1521 GLEAN mRNA 217413 217655 0.482046 + . ID=CGI_10017939; scaffold1521 WUBlastX DNA_TcMar-Tc1 217413 217655 112 + . . scaffold1521 GLEAN mRNA 217494 217652 0.482046 + . ID=CGI_10017939; scaffold1521 WUBlastX DNA_TcMar-Tc1 217494 217652 117 + . . scaffold1521 GLEAN mRNA 217491 217688 0.482046 + . ID=CGI_10017939; scaffold1521 WUBlastX DNA_TcMar-Tc1 217491 217688 90 + . . scaffold1521 GLEAN mRNA 216817 217437 0.482046 + . ID=CGI_10017939; scaffold1521 WUBlastX DNA_TcMar-Tc1 216817 217437 265 + . . scaffold1521 GLEAN mRNA 217661 217798 0.482046 + . ID=CGI_10017939; scaffold1521 WUBlastX DNA_TcMar-Tc1 217661 217798 72 + . . scaffold1521 GLEAN mRNA 229805 229839 0.482046 + . ID=CGI_10017939; scaffold1521 TRF Tandem_Repeat 229805 229839 52 + . . scaffold1521 GLEAN mRNA 229789 229842 0.482046 + . ID=CGI_10017939; scaffold1521 TRF Tandem_Repeat 229789 229842 67 + . . scaffold1521 GLEAN mRNA 313165 313222 0.996817 - . ID=CGI_10017946; scaffold1521 TRF Tandem_Repeat 313165 313222 107 + . . scaffold1521 GLEAN mRNA 346800 346971 0.263392 - . ID=CGI_10017948; scaffold1521 TRF Tandem_Repeat 346800 346971 229 + . . scaffold1521 GLEAN mRNA 350489 350523 0.263392 - . ID=CGI_10017948; scaffold1521 TRF Tandem_Repeat 350489 350523 70 + . . scaffold1521 GLEAN mRNA 351752 351792 0.263392 - . ID=CGI_10017948; scaffold1521 TRF Tandem_Repeat 351752 351792 64 + . . scaffold1521 GLEAN mRNA 384366 384443 0.999051 - . ID=CGI_10017950; scaffold1521 TRF Tandem_Repeat 384366 384443 142 + . . scaffold1521 GLEAN mRNA 441397 441478 0.99909 - . ID=CGI_10017955; scaffold1521 TRF Tandem_Repeat 441397 441478 101 + . . scaffold1521 GLEAN mRNA 443688 443790 0.99909 - . ID=CGI_10017955; scaffold1521 TRF Tandem_Repeat 443688 443790 188 + . . scaffold1521 GLEAN mRNA 476015 476047 0.917827 - . ID=CGI_10017959; scaffold1521 TRF Tandem_Repeat 476015 476047 66 + . . scaffold1521 GLEAN mRNA 519075 519110 0.544852 + . ID=CGI_10017960; scaffold1521 TRF Tandem_Repeat 519075 519110 56 + . . scaffold1521 GLEAN mRNA 519642 519680 0.544852 + . ID=CGI_10017960; scaffold1521 TRF Tandem_Repeat 519642 519680 69 + . . scaffold1521 GLEAN mRNA 521800 521830 0.544852 + . ID=CGI_10017960; scaffold1521 TRF Tandem_Repeat 521800 521830 62 + . . scaffold557 GLEAN mRNA 2865 3524 1 + . ID=CGI_10017962; scaffold557 TRF Tandem_Repeat 2865 3524 898 + . . scaffold557 GLEAN mRNA 18129 18473 1 - . ID=CGI_10017964; scaffold557 TRF Tandem_Repeat 18129 18473 302 + . . scaffold557 GLEAN mRNA 22298 22346 1 - . ID=CGI_10017964; scaffold557 TRF Tandem_Repeat 22298 22346 50 + . . scaffold557 GLEAN mRNA 23494 24356 1 - . ID=CGI_10017964; scaffold557 TRF Tandem_Repeat 23494 24356 1222 + . . scaffold557 GLEAN mRNA 24601 24648 1 - . ID=CGI_10017964; scaffold557 TRF Tandem_Repeat 24601 24648 96 + . . scaffold557 GLEAN mRNA 54313 54891 0.949718 - . ID=CGI_10017966; scaffold557 TRF Tandem_Repeat 54313 54891 952 + . . scaffold557 GLEAN mRNA 54313 54891 0.949718 - . ID=CGI_10017966; scaffold557 TRF Tandem_Repeat 54313 54891 989 + . . scaffold557 GLEAN mRNA 59965 60259 0.949718 - . ID=CGI_10017966; scaffold557 TRF Tandem_Repeat 59965 60259 527 + . . scaffold557 GLEAN mRNA 60302 60703 0.949718 - . ID=CGI_10017966; scaffold557 TRF Tandem_Repeat 60302 60703 732 + . . scaffold557 GLEAN mRNA 62339 64006 0.949718 - . ID=CGI_10017966; scaffold557 TRF Tandem_Repeat 62339 64006 1150 + . . scaffold557 GLEAN mRNA 62352 64006 0.949718 - . ID=CGI_10017966; scaffold557 TRF Tandem_Repeat 62352 64006 1475 + . . scaffold557 GLEAN mRNA 62352 64006 0.949718 - . ID=CGI_10017966; scaffold557 TRF Tandem_Repeat 62352 64006 1347 + . . scaffold557 GLEAN mRNA 64790 64938 0.949718 - . ID=CGI_10017966; scaffold557 TRF Tandem_Repeat 64790 64938 97 + . . scaffold557 GLEAN mRNA 65917 66711 0.949718 - . ID=CGI_10017966; scaffold557 TRF Tandem_Repeat 65917 66711 931 + . . scaffold557 GLEAN mRNA 72590 73510 0.949718 - . ID=CGI_10017966; scaffold557 TRF Tandem_Repeat 72590 73510 1227 + . . scaffold557 GLEAN mRNA 72590 73510 0.949718 - . ID=CGI_10017966; scaffold557 TRF Tandem_Repeat 72590 73510 1254 + . . scaffold557 GLEAN mRNA 72590 73510 0.949718 - . ID=CGI_10017966; scaffold557 TRF Tandem_Repeat 72590 73510 1270 + . . scaffold557 GLEAN mRNA 68165 68524 0.949718 - . ID=CGI_10017966; scaffold557 WUBlastX LINE_L1-Tx1 68165 68524 49 - . . scaffold557 GLEAN mRNA 226543 226792 0.999999 - . ID=CGI_10017967; scaffold557 TRF Tandem_Repeat 226543 226792 428 + . . scaffold557 GLEAN mRNA 258624 258728 0.999716 - . ID=CGI_10017970; scaffold557 TRF Tandem_Repeat 258624 258728 86 + . . scaffold557 GLEAN mRNA 260311 260407 0.999716 - . ID=CGI_10017970; scaffold557 TRF Tandem_Repeat 260311 260407 77 + . . scaffold557 GLEAN mRNA 275960 276032 0.430308 + . ID=CGI_10017971; scaffold557 TRF Tandem_Repeat 275960 276032 60 + . . scaffold557 GLEAN mRNA 275985 276030 0.430308 + . ID=CGI_10017971; scaffold557 TRF Tandem_Repeat 275985 276030 58 + . . scaffold557 GLEAN mRNA 366445 366657 0.975044 - . ID=CGI_10017977; scaffold557 WUBlastX DNA_Chapaev 366445 366657 34 - . . scaffold557 GLEAN mRNA 389590 390363 0.685724 - . ID=CGI_10017978; scaffold557 WUBlastX LINE_CR1 389590 390363 190 - . . scaffold557 GLEAN mRNA 389110 390012 0.685724 - . ID=CGI_10017978; scaffold557 WUBlastX LINE_I 389110 390012 23 - . . scaffold557 GLEAN mRNA 389434 389763 0.685724 - . ID=CGI_10017978; scaffold557 WUBlastX LINE_L1 389434 389763 28 - . . scaffold557 GLEAN mRNA 397509 397940 0.685724 - . ID=CGI_10017978; scaffold557 WUBlastX RC_Helitron 397509 397940 73 - . . scaffold557 GLEAN mRNA 405853 405885 0.99928 + . ID=CGI_10017980; scaffold557 TRF Tandem_Repeat 405853 405885 66 + . . scaffold557 GLEAN mRNA 408825 408858 0.99928 + . ID=CGI_10017980; scaffold557 TRF Tandem_Repeat 408825 408858 68 + . . scaffold557 GLEAN mRNA 401993 402940 0.99928 + . ID=CGI_10017980; scaffold557 WUBlastX LINE_L1-Tx1 401993 402940 533 + . . scaffold557 GLEAN mRNA 402925 403446 0.99928 + . ID=CGI_10017980; scaffold557 WUBlastX LINE_L1-Tx1 402925 403446 210 + . . scaffold557 GLEAN mRNA 403446 403691 0.99928 + . ID=CGI_10017980; scaffold557 WUBlastX LINE_L1-Tx1 403446 403691 50 + . . scaffold557 GLEAN mRNA 401965 402090 0.99928 + . ID=CGI_10017980; scaffold557 WUBlastX LINE_L1 401965 402090 54 + . . scaffold557 GLEAN mRNA 401696 401776 0.99928 + . ID=CGI_10017980; scaffold557 WUBlastX LINE_Jockey 401696 401776 21 + . . scaffold557 GLEAN mRNA 403449 403592 0.99928 + . ID=CGI_10017980; scaffold557 WUBlastX LINE_L1 403449 403592 72 + . . scaffold557 GLEAN mRNA 401779 402081 0.99928 + . ID=CGI_10017980; scaffold557 WUBlastX LINE_L1 401779 402081 39 + . . scaffold557 GLEAN mRNA 411290 411516 0.99928 + . ID=CGI_10017980; scaffold557 TRF Tandem_Repeat 411290 411516 346 + . . scaffold557 GLEAN mRNA 429425 429569 0.99819 + . ID=CGI_10017982; scaffold557 TRF Tandem_Repeat 429425 429569 265 + . . scaffold557 GLEAN mRNA 449324 449373 0.99819 + . ID=CGI_10017982; scaffold557 TRF Tandem_Repeat 449324 449373 100 + . . scaffold557 GLEAN mRNA 464673 464724 0.984791 + . ID=CGI_10017984; scaffold557 TRF Tandem_Repeat 464673 464724 104 + . . scaffold557 GLEAN mRNA 470402 470461 0.999177 - . ID=CGI_10017985; scaffold557 TRF Tandem_Repeat 470402 470461 120 + . . scaffold557 GLEAN mRNA 470402 470461 0.989725 + . ID=CGI_10017986; scaffold557 TRF Tandem_Repeat 470402 470461 120 + . . scaffold557 GLEAN mRNA 480086 480155 0.754354 + . ID=CGI_10017987; scaffold557 TRF Tandem_Repeat 480086 480155 52 + . . scaffold557 GLEAN mRNA 495983 496042 0.508737 + . ID=CGI_10017988; scaffold557 TRF Tandem_Repeat 495983 496042 120 + . . scaffold557 GLEAN mRNA 500807 500852 0.508737 + . ID=CGI_10017988; scaffold557 TRF Tandem_Repeat 500807 500852 92 + . . scaffold557 GLEAN mRNA 518949 519235 0.973204 - . ID=CGI_10017992; scaffold557 TRF Tandem_Repeat 518949 519235 459 + . . scaffold557 GLEAN mRNA 519368 519637 0.973204 - . ID=CGI_10017992; scaffold557 TRF Tandem_Repeat 519368 519637 231 + . . scaffold557 GLEAN mRNA 519719 520032 0.973204 - . ID=CGI_10017992; scaffold557 TRF Tandem_Repeat 519719 520032 175 + . . scaffold557 GLEAN mRNA 524180 524212 0.973204 - . ID=CGI_10017992; scaffold557 TRF Tandem_Repeat 524180 524212 66 + . . scaffold557 GLEAN mRNA 521832 522035 0.973204 - . ID=CGI_10017992; scaffold557 WUBlastX DNA_Maverick 521832 522035 43 - . . scaffold557 GLEAN mRNA 523012 523521 0.973204 - . ID=CGI_10017992; scaffold557 WUBlastX DNA_Maverick 523012 523521 120 - . . scaffold557 GLEAN mRNA 522082 523521 0.973204 - . ID=CGI_10017992; scaffold557 WUBlastX DNA_Maverick 522082 523521 51 - . . scaffold586 GLEAN mRNA 21217 21266 0.978155 + . ID=CGI_10017993; scaffold586 TRF Tandem_Repeat 21217 21266 91 + . . scaffold586 GLEAN mRNA 47021 47102 0.44547 - . ID=CGI_10017994; scaffold586 TRF Tandem_Repeat 47021 47102 155 + . . scaffold586 GLEAN mRNA 51873 52021 0.44547 - . ID=CGI_10017994; scaffold586 TRF Tandem_Repeat 51873 52021 88 + . . scaffold586 GLEAN mRNA 53047 53820 0.44547 - . ID=CGI_10017994; scaffold586 TRF Tandem_Repeat 53047 53820 743 + . . scaffold586 GLEAN mRNA 134092 134282 0.999561 - . ID=CGI_10017998; scaffold586 TRF Tandem_Repeat 134092 134282 165 + . . scaffold586 GLEAN mRNA 136184 136349 0.999561 - . ID=CGI_10017998; scaffold586 TRF Tandem_Repeat 136184 136349 167 + . . scaffold586 GLEAN mRNA 138012 138133 0.999561 - . ID=CGI_10017998; scaffold586 TRF Tandem_Repeat 138012 138133 118 + . . scaffold586 GLEAN mRNA 149596 149643 0.5 + . ID=CGI_10017999; scaffold586 TRF Tandem_Repeat 149596 149643 96 + . . scaffold586 GLEAN mRNA 161758 161835 0.249413 - . ID=CGI_10018000; scaffold586 TRF Tandem_Repeat 161758 161835 93 + . . scaffold586 GLEAN mRNA 176846 176890 0.249413 - . ID=CGI_10018000; scaffold586 TRF Tandem_Repeat 176846 176890 76 + . . scaffold586 GLEAN mRNA 178358 178456 0.249413 - . ID=CGI_10018000; scaffold586 WUBlastX LINE_RTE-X 178358 178456 49 - . . scaffold586 GLEAN mRNA 177903 178190 0.249413 - . ID=CGI_10018000; scaffold586 WUBlastX LINE_RTE-X 177903 178190 68 - . . scaffold586 GLEAN mRNA 178005 178190 0.249413 - . ID=CGI_10018000; scaffold586 WUBlastX LINE_RTE-X 178005 178190 94 - . . scaffold586 GLEAN mRNA 178005 178151 0.249413 - . ID=CGI_10018000; scaffold586 WUBlastX LINE_RTE-X 178005 178151 101 - . . scaffold586 GLEAN mRNA 177993 178244 0.249413 - . ID=CGI_10018000; scaffold586 WUBlastX LINE_RTE-X 177993 178244 49 - . . scaffold586 GLEAN mRNA 178244 178459 0.249413 - . ID=CGI_10018000; scaffold586 WUBlastX LINE_RTE-X 178244 178459 37 - . . scaffold586 GLEAN mRNA 177954 178151 0.249413 - . ID=CGI_10018000; scaffold586 WUBlastX LINE_RTE-X 177954 178151 87 - . . scaffold586 GLEAN mRNA 211195 211236 0.999949 + . ID=CGI_10018003; scaffold586 TRF Tandem_Repeat 211195 211236 50 + . . scaffold586 GLEAN mRNA 217165 217324 0.999949 + . ID=CGI_10018003; scaffold586 TRF Tandem_Repeat 217165 217324 207 + . . scaffold586 GLEAN mRNA 230639 230813 0.99922 - . ID=CGI_10018004; scaffold586 TRF Tandem_Repeat 230639 230813 183 + . . scaffold586 GLEAN mRNA 230639 230760 0.99922 - . ID=CGI_10018004; scaffold586 TRF Tandem_Repeat 230639 230760 149 + . . scaffold586 GLEAN mRNA 231393 231430 0.99922 - . ID=CGI_10018004; scaffold586 TRF Tandem_Repeat 231393 231430 76 + . . scaffold586 GLEAN mRNA 232871 233078 0.99922 - . ID=CGI_10018004; scaffold586 TRF Tandem_Repeat 232871 233078 149 + . . scaffold586 GLEAN mRNA 239541 239640 0.99922 - . ID=CGI_10018004; scaffold586 TRF Tandem_Repeat 239541 239640 116 + . . scaffold586 GLEAN mRNA 288633 288676 0.944267 + . ID=CGI_10018005; scaffold586 TRF Tandem_Repeat 288633 288676 88 + . . scaffold586 GLEAN mRNA 298719 299575 0.999471 + . ID=CGI_10018006; scaffold586 TRF Tandem_Repeat 298719 299575 1245 + . . scaffold586 GLEAN mRNA 301248 301300 0.999471 + . ID=CGI_10018006; scaffold586 TRF Tandem_Repeat 301248 301300 106 + . . scaffold586 GLEAN mRNA 307371 309672 0.999471 + . ID=CGI_10018006; scaffold586 TRF Tandem_Repeat 307371 309672 3564 + . . scaffold586 GLEAN mRNA 307371 309672 0.999471 + . ID=CGI_10018006; scaffold586 TRF Tandem_Repeat 307371 309672 3644 + . . scaffold586 GLEAN mRNA 312318 312381 0.999471 + . ID=CGI_10018006; scaffold586 TRF Tandem_Repeat 312318 312381 128 + . . scaffold586 GLEAN mRNA 316235 316276 0.999471 + . ID=CGI_10018006; scaffold586 TRF Tandem_Repeat 316235 316276 84 + . . scaffold586 GLEAN mRNA 340483 340528 0.999471 + . ID=CGI_10018006; scaffold586 TRF Tandem_Repeat 340483 340528 83 + . . scaffold586 GLEAN mRNA 343059 343280 0.999471 + . ID=CGI_10018006; scaffold586 TRF Tandem_Repeat 343059 343280 175 + . . scaffold586 GLEAN mRNA 370537 370588 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 370537 370588 104 + . . scaffold586 GLEAN mRNA 397992 398036 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 397992 398036 81 + . . scaffold586 GLEAN mRNA 398512 398549 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 398512 398549 67 + . . scaffold586 GLEAN mRNA 401646 401718 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 401646 401718 112 + . . scaffold586 GLEAN mRNA 401855 401892 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 401855 401892 67 + . . scaffold586 GLEAN mRNA 401985 402022 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 401985 402022 76 + . . scaffold586 GLEAN mRNA 413682 413744 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 413682 413744 126 + . . scaffold586 GLEAN mRNA 415468 415621 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 415468 415621 256 + . . scaffold586 GLEAN mRNA 416650 416679 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 416650 416679 60 + . . scaffold586 GLEAN mRNA 426002 426052 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 426002 426052 102 + . . scaffold586 GLEAN mRNA 428488 428548 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 428488 428548 99 + . . scaffold586 GLEAN mRNA 428488 428548 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 428488 428548 86 + . . scaffold586 GLEAN mRNA 433863 433898 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 433863 433898 72 + . . scaffold586 GLEAN mRNA 434184 434442 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 434184 434442 292 + . . scaffold586 GLEAN mRNA 449372 449397 0.905445 - . ID=CGI_10018008; scaffold586 TRF Tandem_Repeat 449372 449397 52 + . . scaffold586 GLEAN mRNA 465543 465645 0.905445 - . ID=CGI_10018008; scaffold586 TRF Tandem_Repeat 465543 465645 64 + . . scaffold586 GLEAN mRNA 474614 474648 0.905445 - . ID=CGI_10018008; scaffold586 TRF Tandem_Repeat 474614 474648 54 + . . scaffold586 GLEAN mRNA 459342 459683 0.905445 - . ID=CGI_10018008; scaffold586 WUBlastX DNA_TcMar-Tc1 459342 459683 34 + . . scaffold586 GLEAN mRNA 459632 460252 0.905445 - . ID=CGI_10018008; scaffold586 WUBlastX DNA_TcMar-Tc1 459632 460252 380 + . . scaffold586 GLEAN mRNA 464238 464426 0.905445 - . ID=CGI_10018008; scaffold586 WUBlastX LTR_Ngaro 464238 464426 23 + . . scaffold586 GLEAN mRNA 464435 464527 0.905445 - . ID=CGI_10018008; scaffold586 WUBlastX LTR_Ngaro 464435 464527 22 + . . scaffold586 GLEAN mRNA 464733 464888 0.905445 - . ID=CGI_10018008; scaffold586 WUBlastX LTR_Ngaro 464733 464888 33 + . . scaffold586 GLEAN mRNA 477594 477869 0.96106 - . ID=CGI_10018009; scaffold586 TRF Tandem_Repeat 477594 477869 288 + . . scaffold586 GLEAN mRNA 477684 478183 0.96106 - . ID=CGI_10018009; scaffold586 TRF Tandem_Repeat 477684 478183 718 + . . scaffold12 GLEAN mRNA 2561 2614 0.970295 + . ID=CGI_10018011; scaffold12 TRF Tandem_Repeat 2561 2614 99 + . . scaffold12 GLEAN mRNA 3359 3571 0.970295 + . ID=CGI_10018011; scaffold12 WUBlastX DNA_hAT-hATw 3359 3571 60 - . . scaffold12 GLEAN mRNA 3634 4122 0.970295 + . ID=CGI_10018011; scaffold12 WUBlastX DNA_hAT-hATw 3634 4122 43 - . . scaffold12 GLEAN mRNA 3252 3350 0.970295 + . ID=CGI_10018011; scaffold12 WUBlastX DNA_hAT-hATw 3252 3350 24 - . . scaffold12 GLEAN mRNA 3240 3329 0.970295 + . ID=CGI_10018011; scaffold12 WUBlastX DNA_hAT-hATw 3240 3329 27 - . . scaffold12 GLEAN mRNA 3715 4314 0.970295 + . ID=CGI_10018011; scaffold12 WUBlastX DNA_hAT-hATw 3715 4314 39 - . . scaffold12 GLEAN mRNA 64078 64112 0.463455 - . ID=CGI_10018015; scaffold12 TRF Tandem_Repeat 64078 64112 61 + . . scaffold12 GLEAN mRNA 112711 112760 0.992434 + . ID=CGI_10018022; scaffold12 TRF Tandem_Repeat 112711 112760 100 + . . scaffold12 GLEAN mRNA 132367 132686 1 + . ID=CGI_10018024; scaffold12 TRF Tandem_Repeat 132367 132686 277 + . . scaffold12 GLEAN mRNA 132367 132686 1 + . ID=CGI_10018024; scaffold12 TRF Tandem_Repeat 132367 132686 326 + . . scaffold12 GLEAN mRNA 178614 179015 1 + . ID=CGI_10018029; scaffold12 TRF Tandem_Repeat 178614 179015 313 + . . scaffold12 GLEAN mRNA 178614 178999 1 + . ID=CGI_10018029; scaffold12 TRF Tandem_Repeat 178614 178999 376 + . . scaffold12 GLEAN mRNA 184436 184770 1 + . ID=CGI_10018029; scaffold12 TRF Tandem_Repeat 184436 184770 445 + . . scaffold12 GLEAN mRNA 241874 241906 0.994211 + . ID=CGI_10018033; scaffold12 TRF Tandem_Repeat 241874 241906 66 + . . scaffold12 GLEAN mRNA 242177 242826 0.994211 + . ID=CGI_10018033; scaffold12 TRF Tandem_Repeat 242177 242826 799 + . . scaffold12 GLEAN mRNA 242837 242907 0.994211 + . ID=CGI_10018033; scaffold12 TRF Tandem_Repeat 242837 242907 97 + . . scaffold12 GLEAN mRNA 242834 242908 0.994211 + . ID=CGI_10018033; scaffold12 TRF Tandem_Repeat 242834 242908 69 + . . scaffold12 GLEAN mRNA 243698 243765 0.994211 + . ID=CGI_10018033; scaffold12 TRF Tandem_Repeat 243698 243765 118 + . . scaffold12 GLEAN mRNA 243893 243962 0.994211 + . ID=CGI_10018033; scaffold12 TRF Tandem_Repeat 243893 243962 124 + . . scaffold12 GLEAN mRNA 244002 244365 0.994211 + . ID=CGI_10018033; scaffold12 TRF Tandem_Repeat 244002 244365 427 + . . scaffold12 GLEAN mRNA 245476 245535 0.994211 + . ID=CGI_10018033; scaffold12 TRF Tandem_Repeat 245476 245535 111 + . . scaffold12 GLEAN mRNA 292426 292456 0.793549 - . ID=CGI_10018039; scaffold12 TRF Tandem_Repeat 292426 292456 62 + . . scaffold12 GLEAN mRNA 294404 294574 0.793549 - . ID=CGI_10018039; scaffold12 WUBlastX LTR_Gypsy 294404 294574 23 - . . scaffold12 GLEAN mRNA 293491 293694 0.793549 - . ID=CGI_10018039; scaffold12 WUBlastX LTR_Gypsy 293491 293694 34 - . . scaffold12 GLEAN mRNA 292114 292296 0.793549 - . ID=CGI_10018039; scaffold12 WUBlastX LTR_Gypsy 292114 292296 39 - . . scaffold12 GLEAN mRNA 293557 293745 0.793549 - . ID=CGI_10018039; scaffold12 WUBlastX LTR_Gypsy 293557 293745 24 - . . scaffold12 GLEAN mRNA 302321 302506 0.793549 - . ID=CGI_10018039; scaffold12 TRF Tandem_Repeat 302321 302506 311 + . . scaffold12 GLEAN mRNA 308751 308921 0.793549 - . ID=CGI_10018039; scaffold12 WUBlastX LTR_Gypsy 308751 308921 20 - . . scaffold12 GLEAN mRNA 309316 309420 0.793549 - . ID=CGI_10018039; scaffold12 WUBlastX LTR_Gypsy 309316 309420 33 - . . scaffold12 GLEAN mRNA 295322 295633 0.793549 - . ID=CGI_10018039; scaffold12 WUBlastX LTR_Gypsy 295322 295633 65 - . . scaffold12 GLEAN mRNA 307677 307892 0.793549 - . ID=CGI_10018039; scaffold12 WUBlastX LTR_Gypsy 307677 307892 48 - . . scaffold12 GLEAN mRNA 319945 319981 0.999647 + . ID=CGI_10018041; scaffold12 TRF Tandem_Repeat 319945 319981 74 + . . scaffold12 GLEAN mRNA 328439 328483 0.999321 + . ID=CGI_10018042; scaffold12 TRF Tandem_Repeat 328439 328483 81 + . . scaffold12 GLEAN mRNA 343561 343653 0.999321 + . ID=CGI_10018042; scaffold12 WUBlastX LTR_Gypsy 343561 343653 30 + . . scaffold12 GLEAN mRNA 339343 339486 0.999321 + . ID=CGI_10018042; scaffold12 WUBlastX LTR_Gypsy 339343 339486 24 + . . scaffold12 GLEAN mRNA 336484 336567 0.999321 + . ID=CGI_10018042; scaffold12 WUBlastX LTR_Gypsy 336484 336567 22 + . . scaffold12 GLEAN mRNA 340896 341039 0.999321 + . ID=CGI_10018042; scaffold12 WUBlastX LTR_Gypsy 340896 341039 29 + . . scaffold12 GLEAN mRNA 351628 351786 0.999321 + . ID=CGI_10018042; scaffold12 WUBlastX LTR_Gypsy 351628 351786 31 + . . scaffold12 GLEAN mRNA 351109 351246 0.999321 + . ID=CGI_10018042; scaffold12 WUBlastX LTR_Gypsy 351109 351246 29 + . . scaffold12 GLEAN mRNA 344503 344856 0.999321 + . ID=CGI_10018042; scaffold12 WUBlastX LTR_Gypsy 344503 344856 58 + . . scaffold12 GLEAN mRNA 350362 350619 0.999321 + . ID=CGI_10018042; scaffold12 WUBlastX LTR_Gypsy 350362 350619 28 + . . scaffold12 GLEAN mRNA 345338 345514 0.999321 + . ID=CGI_10018042; scaffold12 WUBlastX LTR_Gypsy 345338 345514 20 + . . scaffold12 GLEAN mRNA 351148 351246 0.999321 + . ID=CGI_10018042; scaffold12 WUBlastX LTR_Gypsy 351148 351246 35 + . . scaffold12 GLEAN mRNA 347139 347258 0.999321 + . ID=CGI_10018042; scaffold12 WUBlastX LTR_Gypsy 347139 347258 22 + . . scaffold12 GLEAN mRNA 358133 358187 0.879216 - . ID=CGI_10018043; scaffold12 TRF Tandem_Repeat 358133 358187 110 + . . scaffold12 GLEAN mRNA 359420 359817 0.879216 - . ID=CGI_10018043; scaffold12 TRF Tandem_Repeat 359420 359817 565 + . . scaffold12 GLEAN mRNA 359420 359817 0.879216 - . ID=CGI_10018043; scaffold12 TRF Tandem_Repeat 359420 359817 633 + . . scaffold12 GLEAN mRNA 384204 384228 0.907293 - . ID=CGI_10018044; scaffold12 TRF Tandem_Repeat 384204 384228 50 + . . scaffold12 GLEAN mRNA 389596 389656 1 - . ID=CGI_10018045; scaffold12 TRF Tandem_Repeat 389596 389656 122 + . . scaffold12 GLEAN mRNA 414934 415268 0.585202 - . ID=CGI_10018047; scaffold12 TRF Tandem_Repeat 414934 415268 519 + . . scaffold12 GLEAN mRNA 416644 416683 0.585202 - . ID=CGI_10018047; scaffold12 TRF Tandem_Repeat 416644 416683 80 + . . scaffold12 GLEAN mRNA 417885 418873 0.585202 - . ID=CGI_10018047; scaffold12 TRF Tandem_Repeat 417885 418873 1627 + . . scaffold12 GLEAN mRNA 437974 438016 0.999659 + . ID=CGI_10018049; scaffold12 TRF Tandem_Repeat 437974 438016 79 + . . scaffold12 GLEAN mRNA 440459 440497 0.999659 + . ID=CGI_10018049; scaffold12 TRF Tandem_Repeat 440459 440497 78 + . . scaffold12 GLEAN mRNA 461393 461428 0.706488 - . ID=CGI_10018051; scaffold12 TRF Tandem_Repeat 461393 461428 72 + . . scaffold12 GLEAN mRNA 469094 469134 0.706488 - . ID=CGI_10018051; scaffold12 TRF Tandem_Repeat 469094 469134 82 + . . scaffold12 GLEAN mRNA 470452 470800 0.706488 - . ID=CGI_10018051; scaffold12 TRF Tandem_Repeat 470452 470800 309 + . . scaffold12 GLEAN mRNA 470454 470800 0.706488 - . ID=CGI_10018051; scaffold12 TRF Tandem_Repeat 470454 470800 291 + . . scaffold12 GLEAN mRNA 470452 470738 0.706488 - . ID=CGI_10018051; scaffold12 TRF Tandem_Repeat 470452 470738 251 + . . scaffold12 GLEAN mRNA 491615 492741 0.706488 - . ID=CGI_10018051; scaffold12 TRF Tandem_Repeat 491615 492741 1641 + . . scaffold12 GLEAN mRNA 492765 492798 0.706488 - . ID=CGI_10018051; scaffold12 TRF Tandem_Repeat 492765 492798 50 + . . scaffold12 GLEAN mRNA 531705 532138 0.999864 - . ID=CGI_10018053; scaffold12 TRF Tandem_Repeat 531705 532138 455 + . . scaffold12 GLEAN mRNA 531885 532109 0.999864 - . ID=CGI_10018053; scaffold12 TRF Tandem_Repeat 531885 532109 91 + . . scaffold1255 GLEAN mRNA 7997 8230 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 7997 8230 49 - . . scaffold1255 GLEAN mRNA 3822 3989 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 3822 3989 91 - . . scaffold1255 GLEAN mRNA 4175 4333 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 4175 4333 88 - . . scaffold1255 GLEAN mRNA 4508 4747 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 4508 4747 122 - . . scaffold1255 GLEAN mRNA 4834 5031 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 4834 5031 107 - . . scaffold1255 GLEAN mRNA 5250 5780 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 5250 5780 239 - . . scaffold1255 GLEAN mRNA 4843 5082 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 4843 5082 79 - . . scaffold1255 GLEAN mRNA 4139 4312 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 4139 4312 74 - . . scaffold1255 GLEAN mRNA 4244 4744 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 4244 4744 53 - . . scaffold1255 GLEAN mRNA 7871 8230 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_P 7871 8230 42 - . . scaffold1255 GLEAN mRNA 33350 33547 0.702291 - . ID=CGI_10018057; scaffold1255 TRF Tandem_Repeat 33350 33547 191 + . . scaffold1255 GLEAN mRNA 36175 36366 0.702291 - . ID=CGI_10018057; scaffold1255 TRF Tandem_Repeat 36175 36366 182 + . . scaffold1255 GLEAN mRNA 36915 37096 0.702291 - . ID=CGI_10018057; scaffold1255 TRF Tandem_Repeat 36915 37096 188 + . . scaffold1255 GLEAN mRNA 57844 57874 0.998504 + . ID=CGI_10018058; scaffold1255 TRF Tandem_Repeat 57844 57874 55 + . . scaffold1255 GLEAN mRNA 171563 172312 0.82999 - . ID=CGI_10018063; scaffold1255 TRF Tandem_Repeat 171563 172312 1069 + . . scaffold1255 GLEAN mRNA 173735 173792 0.82999 - . ID=CGI_10018063; scaffold1255 TRF Tandem_Repeat 173735 173792 100 + . . scaffold1255 GLEAN mRNA 173738 173791 0.82999 - . ID=CGI_10018063; scaffold1255 TRF Tandem_Repeat 173738 173791 65 + . . scaffold1255 GLEAN mRNA 211554 211826 0.999998 - . ID=CGI_10018068; scaffold1255 WUBlastX RC_Helitron 211554 211826 31 - . . scaffold1255 GLEAN mRNA 214109 214153 0.998357 - . ID=CGI_10018069; scaffold1255 WUBlastX LTR_Gypsy 213971 214153 21 - . . scaffold1255 GLEAN mRNA 293945 294330 1 + . ID=CGI_10018074; scaffold1255 TRF Tandem_Repeat 293945 294330 772 + . . scaffold1255 GLEAN mRNA 305281 305339 0.999949 - . ID=CGI_10018075; scaffold1255 TRF Tandem_Repeat 305281 305339 91 + . . scaffold1255 GLEAN mRNA 305273 305342 0.999949 - . ID=CGI_10018075; scaffold1255 TRF Tandem_Repeat 305273 305342 97 + . . scaffold1255 GLEAN mRNA 305273 305342 0.999949 - . ID=CGI_10018075; scaffold1255 TRF Tandem_Repeat 305273 305342 79 + . . scaffold1255 GLEAN mRNA 305512 307024 0.999949 - . ID=CGI_10018075; scaffold1255 TRF Tandem_Repeat 305512 307024 2108 + . . scaffold1255 GLEAN mRNA 352774 352870 0.927762 - . ID=CGI_10018079; scaffold1255 WUBlastX LTR_Gypsy-Cigr 352088 352870 68 - . . scaffold1255 GLEAN mRNA 377258 378478 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX DNA_hAT 377258 378478 257 - . . scaffold1255 GLEAN mRNA 379013 379195 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX DNA_hAT 379013 379195 57 - . . scaffold1255 GLEAN mRNA 392496 392702 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy 392496 392702 26 + . . scaffold1255 GLEAN mRNA 392466 392657 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy 392466 392657 22 + . . scaffold1255 GLEAN mRNA 392693 393196 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy 392693 393196 30 + . . scaffold1255 GLEAN mRNA 385091 386164 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX DNA_hAT 385091 386164 201 - . . scaffold1255 GLEAN mRNA 386230 386445 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX DNA_hAT 386230 386445 74 - . . scaffold1255 GLEAN mRNA 397143 397232 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Copia 397143 397232 20 + . . scaffold1255 GLEAN mRNA 396222 396449 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy-Cigr 396222 396449 144 + . . scaffold1255 GLEAN mRNA 396469 396747 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy-Cigr 396469 396747 86 + . . scaffold1255 GLEAN mRNA 393918 394307 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy 393918 394307 58 + . . scaffold1255 GLEAN mRNA 393394 393627 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy 393394 393627 59 + . . scaffold1255 GLEAN mRNA 396481 396816 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy 396481 396816 33 + . . scaffold1255 GLEAN mRNA 393998 395692 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy-Cigr 393998 395692 904 + . . scaffold1255 GLEAN mRNA 393448 393915 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy 393448 393915 94 + . . scaffold1255 GLEAN mRNA 393301 393615 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy 393301 393615 35 + . . scaffold1255 GLEAN mRNA 397196 397294 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Copia 397196 397294 24 + . . scaffold1255 GLEAN mRNA 394310 396277 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX LTR_Gypsy 394310 396277 1302 + . . scaffold1255 GLEAN mRNA 385091 386164 0.817334 - . ID=CGI_10018085; scaffold1255 WUBlastX DNA_hAT 385091 386164 201 - . . scaffold1255 GLEAN mRNA 386230 386445 0.817334 - . ID=CGI_10018085; scaffold1255 WUBlastX DNA_hAT 386230 386445 74 - . . scaffold1255 GLEAN mRNA 487165 487213 0.648545 + . ID=CGI_10018087; scaffold1255 TRF Tandem_Repeat 487165 487213 98 + . . scaffold1255 GLEAN mRNA 491627 491831 0.648545 + . ID=CGI_10018087; scaffold1255 TRF Tandem_Repeat 491627 491831 132 + . . scaffold1255 GLEAN mRNA 522745 523984 0.99949 - . ID=CGI_10018091; scaffold1255 TRF Tandem_Repeat 522745 523984 1445 + . . scaffold396 GLEAN mRNA 23996 24173 1 - . ID=CGI_10018093; scaffold396 TRF Tandem_Repeat 23996 24173 284 + . . scaffold396 GLEAN mRNA 23997 24173 1 - . ID=CGI_10018093; scaffold396 TRF Tandem_Repeat 23997 24173 354 + . . scaffold396 GLEAN mRNA 65362 65571 0.479616 + . ID=CGI_10018094; scaffold396 TRF Tandem_Repeat 65362 65571 175 + . . scaffold396 GLEAN mRNA 65398 65601 0.479616 + . ID=CGI_10018094; scaffold396 TRF Tandem_Repeat 65398 65601 221 + . . scaffold396 GLEAN mRNA 133558 133911 0.64028 + . ID=CGI_10018098; scaffold396 WUBlastX DNA_Academ 133483 134151 184 + . . scaffold396 GLEAN mRNA 144704 145048 0.499792 + . ID=CGI_10018099; scaffold396 WUBlastX LTR_Ngaro 144704 145048 134 - . . scaffold396 GLEAN mRNA 140501 141364 0.499792 + . ID=CGI_10018099; scaffold396 WUBlastX LTR_Ngaro 140501 141364 364 - . . scaffold396 GLEAN mRNA 143541 143732 0.499792 + . ID=CGI_10018099; scaffold396 WUBlastX LTR_Ngaro 143541 143732 82 - . . scaffold396 GLEAN mRNA 143749 144321 0.499792 + . ID=CGI_10018099; scaffold396 WUBlastX LTR_Ngaro 143749 144321 407 - . . scaffold396 GLEAN mRNA 142048 142851 0.499792 + . ID=CGI_10018099; scaffold396 WUBlastX LTR_Ngaro 142048 142851 247 - . . scaffold396 GLEAN mRNA 143418 143765 0.499792 + . ID=CGI_10018099; scaffold396 WUBlastX LTR_Ngaro 143418 143765 71 - . . scaffold396 GLEAN mRNA 141886 142620 0.499792 + . ID=CGI_10018099; scaffold396 WUBlastX LTR_Ngaro 141886 142620 359 - . . scaffold396 GLEAN mRNA 207066 207147 0.948886 - . ID=CGI_10018103; scaffold396 TRF Tandem_Repeat 207066 207147 164 + . . scaffold396 GLEAN mRNA 204416 204760 0.948886 - . ID=CGI_10018103; scaffold396 WUBlastX LINE_RTE-X 204416 204760 137 + . . scaffold396 GLEAN mRNA 204431 204700 0.948886 - . ID=CGI_10018103; scaffold396 WUBlastX LINE_RTE-X 204431 204700 169 + . . scaffold396 GLEAN mRNA 204437 204826 0.948886 - . ID=CGI_10018103; scaffold396 WUBlastX LINE_RTE-BovB 204437 204826 36 + . . scaffold396 GLEAN mRNA 204347 204706 0.948886 - . ID=CGI_10018103; scaffold396 WUBlastX LINE_CR1 204347 204706 58 + . . scaffold396 GLEAN mRNA 275023 275533 0.862366 + . ID=CGI_10018109; scaffold396 TRF Tandem_Repeat 275023 275533 905 + . . scaffold396 GLEAN mRNA 321340 321417 0.999527 + . ID=CGI_10018112; scaffold396 TRF Tandem_Repeat 321340 321417 156 + . . scaffold396 GLEAN mRNA 325233 326107 0.999527 + . ID=CGI_10018112; scaffold396 TRF Tandem_Repeat 325233 326107 711 + . . scaffold396 GLEAN mRNA 360454 360513 0.861188 + . ID=CGI_10018113; scaffold396 TRF Tandem_Repeat 360454 360513 84 + . . scaffold396 GLEAN mRNA 381611 381663 1 + . ID=CGI_10018114; scaffold396 TRF Tandem_Repeat 381611 381663 106 + . . scaffold396 GLEAN mRNA 384852 385240 1 + . ID=CGI_10018114; scaffold396 TRF Tandem_Repeat 384852 385240 471 + . . scaffold396 GLEAN mRNA 384800 385240 1 + . ID=CGI_10018114; scaffold396 TRF Tandem_Repeat 384800 385240 496 + . . scaffold396 GLEAN mRNA 385572 385911 1 + . ID=CGI_10018114; scaffold396 TRF Tandem_Repeat 385572 385911 409 + . . scaffold396 GLEAN mRNA 406021 407418 0.999676 + . ID=CGI_10018116; scaffold396 WUBlastX DNA_hAT 406021 407418 213 + . . scaffold396 GLEAN mRNA 431555 431598 0.99999 - . ID=CGI_10018118; scaffold396 TRF Tandem_Repeat 431555 431598 88 + . . scaffold396 GLEAN mRNA 454058 454123 0.337862 + . ID=CGI_10018121; scaffold396 TRF Tandem_Repeat 454058 454123 132 + . . scaffold396 GLEAN mRNA 457614 457663 0.337862 + . ID=CGI_10018121; scaffold396 TRF Tandem_Repeat 457614 457663 75 + . . scaffold396 GLEAN mRNA 462811 462869 0.337862 + . ID=CGI_10018121; scaffold396 TRF Tandem_Repeat 462811 462869 111 + . . scaffold396 GLEAN mRNA 524184 524294 1 - . ID=CGI_10018128; scaffold396 TRF Tandem_Repeat 524184 524294 138 + . . scaffold236 GLEAN mRNA 33626 33650 1 - . ID=CGI_10018134; scaffold236 TRF Tandem_Repeat 33626 33650 50 + . . scaffold236 GLEAN mRNA 38300 38329 0.565289 + . ID=CGI_10018135; scaffold236 TRF Tandem_Repeat 38300 38329 60 + . . scaffold236 GLEAN mRNA 41030 41072 0.565289 + . ID=CGI_10018135; scaffold236 TRF Tandem_Repeat 41030 41072 79 + . . scaffold236 GLEAN mRNA 37740 38174 0.565289 + . ID=CGI_10018135; scaffold236 WUBlastX LINE_L2 37740 38174 51 + . . scaffold236 GLEAN mRNA 37599 37994 0.565289 + . ID=CGI_10018135; scaffold236 WUBlastX LTR_ERV1 37599 37994 41 + . . scaffold236 GLEAN mRNA 37716 38102 0.565289 + . ID=CGI_10018135; scaffold236 WUBlastX LINE_L2 37716 38102 62 + . . scaffold236 GLEAN mRNA 85271 85304 0.768352 - . ID=CGI_10018136; scaffold236 TRF Tandem_Repeat 85271 85304 52 + . . scaffold236 GLEAN mRNA 100149 100214 0.768352 - . ID=CGI_10018136; scaffold236 TRF Tandem_Repeat 100149 100214 132 + . . scaffold236 GLEAN mRNA 168044 168203 1 - . ID=CGI_10018137; scaffold236 TRF Tandem_Repeat 168044 168203 203 + . . scaffold236 GLEAN mRNA 172133 172174 1 - . ID=CGI_10018137; scaffold236 TRF Tandem_Repeat 172133 172174 59 + . . scaffold236 GLEAN mRNA 227759 228019 0.996819 + . ID=CGI_10018138; scaffold236 WUBlastX DNA_P 227759 228019 72 + . . scaffold236 GLEAN mRNA 230894 231106 1 + . ID=CGI_10018139; scaffold236 WUBlastX DNA_Kolobok 230894 231106 77 + . . scaffold236 GLEAN mRNA 229601 230119 1 + . ID=CGI_10018139; scaffold236 WUBlastX DNA_Kolobok 229601 230119 272 + . . scaffold236 GLEAN mRNA 230235 230435 1 + . ID=CGI_10018139; scaffold236 WUBlastX DNA_Kolobok 230235 230435 127 + . . scaffold236 GLEAN mRNA 230515 230892 1 + . ID=CGI_10018139; scaffold236 WUBlastX DNA_Kolobok 230515 230892 88 + . . scaffold236 GLEAN mRNA 231169 231339 1 + . ID=CGI_10018139; scaffold236 WUBlastX DNA_Kolobok 231169 231339 115 + . . scaffold236 GLEAN mRNA 230557 230817 1 + . ID=CGI_10018139; scaffold236 WUBlastX DNA_Kolobok 230557 230817 104 + . . scaffold236 GLEAN mRNA 231620 231766 0.958487 - . ID=CGI_10018140; scaffold236 WUBlastX DNA_Kolobok 231620 231766 71 - . . scaffold236 GLEAN mRNA 231620 231805 0.958487 - . ID=CGI_10018140; scaffold236 WUBlastX DNA_Kolobok 231620 231805 65 - . . scaffold236 GLEAN mRNA 232070 232252 0.958487 - . ID=CGI_10018140; scaffold236 WUBlastX DNA_Kolobok 232070 232252 31 - . . scaffold236 GLEAN mRNA 249298 249362 0.904915 - . ID=CGI_10018141; scaffold236 TRF Tandem_Repeat 249298 249362 67 + . . scaffold236 GLEAN mRNA 249954 249996 0.904915 - . ID=CGI_10018141; scaffold236 TRF Tandem_Repeat 249954 249996 77 + . . scaffold236 GLEAN mRNA 287166 287312 1 - . ID=CGI_10018143; scaffold236 TRF Tandem_Repeat 287166 287312 197 + . . scaffold236 GLEAN mRNA 291318 291375 1 - . ID=CGI_10018143; scaffold236 TRF Tandem_Repeat 291318 291375 91 + . . scaffold236 GLEAN mRNA 291318 291363 1 - . ID=CGI_10018143; scaffold236 TRF Tandem_Repeat 291318 291363 65 + . . scaffold236 GLEAN mRNA 291318 291375 1 - . ID=CGI_10018143; scaffold236 TRF Tandem_Repeat 291318 291375 73 + . . scaffold236 GLEAN mRNA 299007 299071 1 - . ID=CGI_10018143; scaffold236 TRF Tandem_Repeat 299007 299071 85 + . . scaffold236 GLEAN mRNA 378484 378522 0.556903 + . ID=CGI_10018155; scaffold236 TRF Tandem_Repeat 378484 378522 78 + . . scaffold236 GLEAN mRNA 380391 380440 0.556903 + . ID=CGI_10018155; scaffold236 TRF Tandem_Repeat 380391 380440 59 + . . scaffold236 GLEAN mRNA 382201 382265 0.556903 + . ID=CGI_10018155; scaffold236 TRF Tandem_Repeat 382201 382265 67 + . . scaffold236 GLEAN mRNA 388591 388648 0.999735 + . ID=CGI_10018156; scaffold236 TRF Tandem_Repeat 388591 388648 73 + . . scaffold236 GLEAN mRNA 388592 388645 0.999735 + . ID=CGI_10018156; scaffold236 TRF Tandem_Repeat 388592 388645 56 + . . scaffold236 GLEAN mRNA 390881 390945 0.999735 + . ID=CGI_10018156; scaffold236 TRF Tandem_Repeat 390881 390945 112 + . . scaffold236 GLEAN mRNA 424323 424349 0.738287 + . ID=CGI_10018157; scaffold236 TRF Tandem_Repeat 424323 424349 54 + . . scaffold236 GLEAN mRNA 515954 515986 0.773196 - . ID=CGI_10018162; scaffold236 TRF Tandem_Repeat 515954 515986 57 + . . scaffold459 GLEAN mRNA 15271 15315 0.927404 - . ID=CGI_10018163; scaffold459 TRF Tandem_Repeat 15271 15315 90 + . . scaffold459 GLEAN mRNA 22894 23619 0.650564 + . ID=CGI_10018164; scaffold459 WUBlastX LINE_RTE-X 22894 23619 209 + . . scaffold459 GLEAN mRNA 33721 33746 0.650564 + . ID=CGI_10018164; scaffold459 TRF Tandem_Repeat 33721 33746 52 + . . scaffold459 GLEAN mRNA 22894 23619 0.918956 - . ID=CGI_10018165; scaffold459 WUBlastX LINE_RTE-X 22894 23619 209 + . . scaffold459 GLEAN mRNA 45250 45289 1 - . ID=CGI_10018166; scaffold459 TRF Tandem_Repeat 45250 45289 62 + . . scaffold459 GLEAN mRNA 50311 50402 0.45554 + . ID=CGI_10018167; scaffold459 TRF Tandem_Repeat 50311 50402 103 + . . scaffold459 GLEAN mRNA 51159 51431 0.45554 + . ID=CGI_10018167; scaffold459 WUBlastX DNA_Merlin 51159 51431 128 - . . scaffold459 GLEAN mRNA 52351 52653 0.45554 + . ID=CGI_10018167; scaffold459 WUBlastX DNA_Merlin 52351 52653 189 - . . scaffold459 GLEAN mRNA 52354 52896 0.45554 + . ID=CGI_10018167; scaffold459 WUBlastX DNA_Merlin 52354 52896 117 - . . scaffold459 GLEAN mRNA 51150 51503 0.45554 + . ID=CGI_10018167; scaffold459 WUBlastX DNA_Merlin 51150 51503 98 - . . scaffold459 GLEAN mRNA 68296 68324 0.45554 + . ID=CGI_10018167; scaffold459 TRF Tandem_Repeat 68296 68324 58 + . . scaffold459 GLEAN mRNA 82188 82471 0.45554 + . ID=CGI_10018167; scaffold459 TRF Tandem_Repeat 82188 82471 509 + . . scaffold459 GLEAN mRNA 95933 96052 0.843454 + . ID=CGI_10018169; scaffold459 TRF Tandem_Repeat 95933 96052 96 + . . scaffold459 GLEAN mRNA 92274 92876 0.843454 + . ID=CGI_10018169; scaffold459 WUBlastX LINE_RTE-X 92274 92876 164 + . . scaffold459 GLEAN mRNA 92836 93024 0.843454 + . ID=CGI_10018169; scaffold459 WUBlastX LINE_RTE-X 92836 93024 27 + . . scaffold459 GLEAN mRNA 92878 92985 0.843454 + . ID=CGI_10018169; scaffold459 WUBlastX LINE_RTE-X 92878 92985 38 + . . scaffold459 GLEAN mRNA 92244 92348 0.843454 + . ID=CGI_10018169; scaffold459 WUBlastX LINE_RTE-X 92244 92348 24 + . . scaffold459 GLEAN mRNA 98986 99099 0.843454 + . ID=CGI_10018169; scaffold459 TRF Tandem_Repeat 98986 99099 86 + . . scaffold459 GLEAN mRNA 137523 137852 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 137523 137852 60 - . . scaffold459 GLEAN mRNA 137484 137654 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 137484 137654 33 - . . scaffold459 GLEAN mRNA 137912 138256 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 137912 138256 40 - . . scaffold459 GLEAN mRNA 137384 137455 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 137384 137455 31 - . . scaffold459 GLEAN mRNA 137523 137792 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 137523 137792 84 - . . scaffold459 GLEAN mRNA 131821 132531 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 131821 132531 29 - . . scaffold459 GLEAN mRNA 131821 132150 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 131821 132150 52 - . . scaffold459 GLEAN mRNA 131821 132090 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 131821 132090 74 - . . scaffold459 GLEAN mRNA 132424 132555 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 132424 132555 29 - . . scaffold459 GLEAN mRNA 132198 132302 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 132198 132302 35 - . . scaffold459 GLEAN mRNA 132427 132531 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 132427 132531 36 - . . scaffold459 GLEAN mRNA 147668 147721 0.813912 - . ID=CGI_10018171; scaffold459 TRF Tandem_Repeat 147668 147721 108 + . . scaffold459 GLEAN mRNA 158582 158630 0.813912 - . ID=CGI_10018171; scaffold459 TRF Tandem_Repeat 158582 158630 98 + . . scaffold459 GLEAN mRNA 159507 159531 0.813912 - . ID=CGI_10018171; scaffold459 TRF Tandem_Repeat 159507 159531 50 + . . scaffold459 GLEAN mRNA 157606 157785 0.813912 - . ID=CGI_10018171; scaffold459 WUBlastX DNA_TcMar-Marin 157606 157785 47 - . . scaffold459 GLEAN mRNA 177857 178100 0.837416 + . ID=CGI_10018172; scaffold459 TRF Tandem_Repeat 177857 178100 130 + . . scaffold459 GLEAN mRNA 177901 178173 0.837416 + . ID=CGI_10018172; scaffold459 TRF Tandem_Repeat 177901 178173 199 + . . scaffold459 GLEAN mRNA 177905 178147 0.837416 + . ID=CGI_10018172; scaffold459 TRF Tandem_Repeat 177905 178147 391 + . . scaffold459 GLEAN mRNA 178332 178468 0.837416 + . ID=CGI_10018172; scaffold459 TRF Tandem_Repeat 178332 178468 60 + . . scaffold459 GLEAN mRNA 178333 178463 0.837416 + . ID=CGI_10018172; scaffold459 TRF Tandem_Repeat 178333 178463 84 + . . scaffold459 GLEAN mRNA 178376 178481 0.837416 + . ID=CGI_10018172; scaffold459 TRF Tandem_Repeat 178376 178481 77 + . . scaffold459 GLEAN mRNA 181299 181346 0.837416 + . ID=CGI_10018172; scaffold459 TRF Tandem_Repeat 181299 181346 96 + . . scaffold459 GLEAN mRNA 217527 217570 0.837416 + . ID=CGI_10018172; scaffold459 TRF Tandem_Repeat 217527 217570 79 + . . scaffold459 GLEAN mRNA 241615 241704 0.235296 - . ID=CGI_10018173; scaffold459 TRF Tandem_Repeat 241615 241704 56 + . . scaffold459 GLEAN mRNA 251152 251198 0.998991 - . ID=CGI_10018174; scaffold459 TRF Tandem_Repeat 251152 251198 76 + . . scaffold459 GLEAN mRNA 290693 290763 0.9159 - . ID=CGI_10018176; scaffold459 TRF Tandem_Repeat 290693 290763 117 + . . scaffold459 GLEAN mRNA 364617 364622 0.990874 - . ID=CGI_10018183; scaffold459 WUBlastX LTR_Gypsy 364617 364922 52 - . . scaffold459 GLEAN mRNA 450353 450403 0.693067 - . ID=CGI_10018185; scaffold459 TRF Tandem_Repeat 450353 450403 52 + . . scaffold459 GLEAN mRNA 455153 455190 0.693067 - . ID=CGI_10018185; scaffold459 TRF Tandem_Repeat 455153 455190 60 + . . scaffold459 GLEAN mRNA 459752 460141 0.693067 - . ID=CGI_10018185; scaffold459 WUBlastX LINE_Penelope 459752 460141 53 - . . scaffold459 GLEAN mRNA 462709 463251 0.693067 - . ID=CGI_10018185; scaffold459 WUBlastX DNA_TcMar-Marin 462709 463251 96 + . . scaffold459 GLEAN mRNA 494755 494814 0.372595 - . ID=CGI_10018187; scaffold459 TRF Tandem_Repeat 494755 494814 120 + . . scaffold459 GLEAN mRNA 510258 510308 0.372595 - . ID=CGI_10018187; scaffold459 TRF Tandem_Repeat 510258 510308 102 + . . scaffold459 GLEAN mRNA 510819 510885 0.372595 - . ID=CGI_10018187; scaffold459 TRF Tandem_Repeat 510819 510885 71 + . . scaffold459 GLEAN mRNA 510819 510885 0.372595 - . ID=CGI_10018187; scaffold459 TRF Tandem_Repeat 510819 510885 80 + . . scaffold622 GLEAN mRNA 2092 2124 0.499919 + . ID=CGI_10018188; scaffold622 TRF Tandem_Repeat 2092 2124 50 + . . scaffold622 GLEAN mRNA 53566 53602 0.648556 - . ID=CGI_10018190; scaffold622 TRF Tandem_Repeat 53566 53602 74 + . . scaffold622 GLEAN mRNA 77576 78075 0.374698 - . ID=CGI_10018191; scaffold622 TRF Tandem_Repeat 77576 78075 826 + . . scaffold622 GLEAN mRNA 79473 79821 0.374698 - . ID=CGI_10018191; scaffold622 TRF Tandem_Repeat 79473 79821 563 + . . scaffold622 GLEAN mRNA 114893 115186 0.999949 + . ID=CGI_10018196; scaffold622 TRF Tandem_Repeat 114893 115186 261 + . . scaffold622 GLEAN mRNA 114876 115125 0.999949 + . ID=CGI_10018196; scaffold622 TRF Tandem_Repeat 114876 115125 331 + . . scaffold622 GLEAN mRNA 135626 135735 1 + . ID=CGI_10018197; scaffold622 TRF Tandem_Repeat 135626 135735 96 + . . scaffold622 GLEAN mRNA 135693 135737 1 + . ID=CGI_10018197; scaffold622 TRF Tandem_Repeat 135693 135737 81 + . . scaffold622 GLEAN mRNA 259764 259790 0.571796 - . ID=CGI_10018204; scaffold622 TRF Tandem_Repeat 259764 259790 54 + . . scaffold622 GLEAN mRNA 259764 259790 0.272001 + . ID=CGI_10018205; scaffold622 TRF Tandem_Repeat 259764 259790 54 + . . scaffold622 GLEAN mRNA 269743 269783 0.272001 + . ID=CGI_10018205; scaffold622 TRF Tandem_Repeat 269743 269783 59 + . . scaffold622 GLEAN mRNA 288224 288366 0.660895 - . ID=CGI_10018207; scaffold622 TRF Tandem_Repeat 288224 288366 213 + . . scaffold622 GLEAN mRNA 309060 309362 0.586807 - . ID=CGI_10018209; scaffold622 WUBlastX DNA_Crypton 309060 309362 69 + . . scaffold622 GLEAN mRNA 312449 312475 0.586807 - . ID=CGI_10018209; scaffold622 TRF Tandem_Repeat 312449 312475 54 + . . scaffold622 GLEAN mRNA 336491 337449 0.544628 + . ID=CGI_10018211; scaffold622 TRF Tandem_Repeat 336491 337449 1366 + . . scaffold622 GLEAN mRNA 383847 383871 0.999351 + . ID=CGI_10018213; scaffold622 TRF Tandem_Repeat 383847 383871 50 + . . scaffold622 GLEAN mRNA 384784 384844 0.999351 + . ID=CGI_10018213; scaffold622 TRF Tandem_Repeat 384784 384844 122 + . . scaffold622 GLEAN mRNA 381934 383508 0.999351 + . ID=CGI_10018213; scaffold622 WUBlastX LINE_RTE-X 381934 383508 634 + . . scaffold622 GLEAN mRNA 390518 390587 0.998365 + . ID=CGI_10018214; scaffold622 TRF Tandem_Repeat 390518 390587 122 + . . scaffold622 GLEAN mRNA 390653 390708 0.998365 + . ID=CGI_10018214; scaffold622 TRF Tandem_Repeat 390653 390708 51 + . . scaffold622 GLEAN mRNA 395366 396124 0.998365 + . ID=CGI_10018214; scaffold622 TRF Tandem_Repeat 395366 396124 1035 + . . scaffold622 GLEAN mRNA 396210 396280 0.998365 + . ID=CGI_10018214; scaffold622 TRF Tandem_Repeat 396210 396280 106 + . . scaffold622 GLEAN mRNA 394376 394555 0.998365 + . ID=CGI_10018214; scaffold622 WUBlastX LINE_RTE-X 394376 394555 101 + . . scaffold622 GLEAN mRNA 423821 424051 0.98826 + . ID=CGI_10018215; scaffold622 TRF Tandem_Repeat 423821 424051 426 + . . scaffold622 GLEAN mRNA 494806 494843 0.863771 + . ID=CGI_10018222; scaffold622 TRF Tandem_Repeat 494806 494843 60 + . . scaffold622 GLEAN mRNA 494981 495731 0.863771 + . ID=CGI_10018222; scaffold622 TRF Tandem_Repeat 494981 495731 967 + . . scaffold622 GLEAN mRNA 507953 508143 0.863771 + . ID=CGI_10018222; scaffold622 TRF Tandem_Repeat 507953 508143 285 + . . scaffold622 GLEAN mRNA 507783 507951 0.863771 + . ID=CGI_10018222; scaffold622 TRF Tandem_Repeat 507783 507951 266 + . . scaffold622 GLEAN mRNA 530396 531158 0.999795 - . ID=CGI_10018223; scaffold622 TRF Tandem_Repeat 530396 531158 1004 + . . scaffold622 GLEAN mRNA 531320 531369 0.999795 - . ID=CGI_10018223; scaffold622 TRF Tandem_Repeat 531320 531369 63 + . . scaffold622 GLEAN mRNA 535056 535087 1 - . ID=CGI_10018224; scaffold622 TRF Tandem_Repeat 535056 535087 55 + . . scaffold728 GLEAN mRNA 33477 33517 0.887954 - . ID=CGI_10018226; scaffold728 TRF Tandem_Repeat 33477 33517 82 + . . scaffold728 GLEAN mRNA 53755 53784 0.887954 - . ID=CGI_10018226; scaffold728 TRF Tandem_Repeat 53755 53784 53 + . . scaffold728 GLEAN mRNA 55156 55255 0.887954 - . ID=CGI_10018226; scaffold728 TRF Tandem_Repeat 55156 55255 184 + . . scaffold728 GLEAN mRNA 75154 75212 1 + . ID=CGI_10018227; scaffold728 TRF Tandem_Repeat 75154 75212 118 + . . scaffold728 GLEAN mRNA 93783 93835 0.99809 - . ID=CGI_10018228; scaffold728 TRF Tandem_Repeat 93783 93835 106 + . . scaffold728 GLEAN mRNA 106667 106831 0.99809 - . ID=CGI_10018228; scaffold728 WUBlastX LTR_Gypsy 106667 106831 43 - . . scaffold728 GLEAN mRNA 105982 106089 0.99809 - . ID=CGI_10018228; scaffold728 WUBlastX LTR_Gypsy 105982 106089 22 - . . scaffold728 GLEAN mRNA 107113 107238 0.99809 - . ID=CGI_10018228; scaffold728 WUBlastX LTR_Gypsy 107113 107238 27 - . . scaffold728 GLEAN mRNA 122948 123003 0.999999 + . ID=CGI_10018229; scaffold728 TRF Tandem_Repeat 122948 123003 112 + . . scaffold728 GLEAN mRNA 126275 126322 0.999999 + . ID=CGI_10018229; scaffold728 TRF Tandem_Repeat 126275 126322 51 + . . scaffold728 GLEAN mRNA 126280 126329 0.999999 + . ID=CGI_10018229; scaffold728 TRF Tandem_Repeat 126280 126329 73 + . . scaffold728 GLEAN mRNA 126284 126329 0.999999 + . ID=CGI_10018229; scaffold728 TRF Tandem_Repeat 126284 126329 56 + . . scaffold728 GLEAN mRNA 126353 127434 0.999999 + . ID=CGI_10018229; scaffold728 TRF Tandem_Repeat 126353 127434 1595 + . . scaffold728 GLEAN mRNA 130287 130323 0.558395 + . ID=CGI_10018230; scaffold728 TRF Tandem_Repeat 130287 130323 56 + . . scaffold728 GLEAN mRNA 168400 168705 0.997729 + . ID=CGI_10018231; scaffold728 WUBlastX DNA_hAT-Blackja 168400 168705 88 - . . scaffold728 GLEAN mRNA 242016 242065 0.931393 + . ID=CGI_10018234; scaffold728 TRF Tandem_Repeat 242016 242065 100 + . . scaffold728 GLEAN mRNA 243008 243046 0.931393 + . ID=CGI_10018234; scaffold728 TRF Tandem_Repeat 243008 243046 78 + . . scaffold728 GLEAN mRNA 243348 243379 0.931393 + . ID=CGI_10018234; scaffold728 TRF Tandem_Repeat 243348 243379 55 + . . scaffold728 GLEAN mRNA 249444 249480 0.999351 + . ID=CGI_10018235; scaffold728 TRF Tandem_Repeat 249444 249480 74 + . . scaffold728 GLEAN mRNA 290318 290362 0.999676 + . ID=CGI_10018238; scaffold728 TRF Tandem_Repeat 290318 290362 65 + . . scaffold728 GLEAN mRNA 304385 304419 0.302343 + . ID=CGI_10018240; scaffold728 TRF Tandem_Repeat 304385 304419 70 + . . scaffold728 GLEAN mRNA 305186 305562 0.302343 + . ID=CGI_10018240; scaffold728 TRF Tandem_Repeat 305186 305562 481 + . . scaffold728 GLEAN mRNA 305195 305569 0.302343 + . ID=CGI_10018240; scaffold728 TRF Tandem_Repeat 305195 305569 551 + . . scaffold728 GLEAN mRNA 493548 493597 0.420812 - . ID=CGI_10018245; scaffold728 TRF Tandem_Repeat 493548 493597 59 + . . scaffold728 GLEAN mRNA 496085 496137 0.420812 - . ID=CGI_10018245; scaffold728 TRF Tandem_Repeat 496085 496137 106 + . . scaffold1737 GLEAN mRNA 122072 122099 0.828788 + . ID=CGI_10018248; scaffold1737 TRF Tandem_Repeat 122072 122099 56 + . . scaffold1737 GLEAN mRNA 401327 402932 0.999999 - . ID=CGI_10018250; scaffold1737 TRF Tandem_Repeat 401327 402932 2959 + . . scaffold1737 GLEAN mRNA 407226 407721 0.999999 - . ID=CGI_10018250; scaffold1737 TRF Tandem_Repeat 407226 407721 582 + . . scaffold1737 GLEAN mRNA 409975 410415 0.999999 - . ID=CGI_10018250; scaffold1737 TRF Tandem_Repeat 409975 410415 677 + . . scaffold1737 GLEAN mRNA 412067 412270 0.999999 - . ID=CGI_10018250; scaffold1737 TRF Tandem_Repeat 412067 412270 311 + . . scaffold1737 GLEAN mRNA 413920 414149 0.999999 - . ID=CGI_10018250; scaffold1737 TRF Tandem_Repeat 413920 414149 397 + . . scaffold1737 GLEAN mRNA 422711 422769 0.999376 - . ID=CGI_10018251; scaffold1737 TRF Tandem_Repeat 422711 422769 118 + . . scaffold1737 GLEAN mRNA 441087 441111 0.999676 + . ID=CGI_10018254; scaffold1737 TRF Tandem_Repeat 441087 441111 50 + . . scaffold1737 GLEAN mRNA 443650 445458 0.999676 + . ID=CGI_10018254; scaffold1737 TRF Tandem_Repeat 443650 445458 2075 + . . scaffold1737 GLEAN mRNA 450972 451097 0.999999 + . ID=CGI_10018255; scaffold1737 TRF Tandem_Repeat 450972 451097 155 + . . scaffold1737 GLEAN mRNA 450972 451154 0.999999 + . ID=CGI_10018255; scaffold1737 TRF Tandem_Repeat 450972 451154 141 + . . scaffold1737 GLEAN mRNA 451181 451330 0.999999 + . ID=CGI_10018255; scaffold1737 TRF Tandem_Repeat 451181 451330 147 + . . scaffold1737 GLEAN mRNA 453625 453679 0.999999 + . ID=CGI_10018255; scaffold1737 TRF Tandem_Repeat 453625 453679 110 + . . scaffold1737 GLEAN mRNA 462151 462471 0.999999 + . ID=CGI_10018255; scaffold1737 WUBlastX LINE_RTE-X 462151 462471 76 - . . scaffold1737 GLEAN mRNA 462205 462408 0.999999 + . ID=CGI_10018255; scaffold1737 WUBlastX LINE_RTE-X 462205 462408 105 - . . scaffold1737 GLEAN mRNA 462111 462188 0.999999 + . ID=CGI_10018255; scaffold1737 WUBlastX LINE_RTE-X 462111 462188 24 - . . scaffold1737 GLEAN mRNA 466560 466981 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 466560 466981 344 + . . scaffold1737 GLEAN mRNA 480496 480708 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 480496 480708 237 + . . scaffold1737 GLEAN mRNA 483016 483131 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 483016 483131 78 + . . scaffold1737 GLEAN mRNA 492166 492213 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 492166 492213 96 + . . scaffold1737 GLEAN mRNA 492550 493031 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 492550 493031 910 + . . scaffold1737 GLEAN mRNA 494229 494277 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 494229 494277 98 + . . scaffold1737 GLEAN mRNA 497969 498555 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 497969 498555 915 + . . scaffold1737 GLEAN mRNA 499083 500010 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 499083 500010 1404 + . . scaffold1737 GLEAN mRNA 500930 501173 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 500930 501173 317 + . . scaffold1737 GLEAN mRNA 503524 504749 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 503524 504749 1471 + . . scaffold1737 GLEAN mRNA 503524 504749 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 503524 504749 1490 + . . scaffold1737 GLEAN mRNA 510758 511550 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 510758 511550 1202 + . . scaffold1737 GLEAN mRNA 512172 512385 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 512172 512385 428 + . . scaffold1737 GLEAN mRNA 517172 518397 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 517172 518397 1297 + . . scaffold1737 GLEAN mRNA 518690 519883 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 518690 519883 1330 + . . scaffold1737 GLEAN mRNA 522295 522517 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 522295 522517 437 + . . scaffold1737 GLEAN mRNA 525423 525862 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 525423 525862 605 + . . scaffold1737 GLEAN mRNA 525423 525862 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 525423 525862 603 + . . scaffold1737 GLEAN mRNA 526891 527830 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 526891 527830 1302 + . . scaffold1737 GLEAN mRNA 517172 518397 0.999999 + . ID=CGI_10018258; scaffold1737 TRF Tandem_Repeat 517172 518397 1297 + . . scaffold1737 GLEAN mRNA 518690 519883 0.999999 + . ID=CGI_10018258; scaffold1737 TRF Tandem_Repeat 518690 519883 1330 + . . scaffold1737 GLEAN mRNA 522295 522517 0.999999 + . ID=CGI_10018258; scaffold1737 TRF Tandem_Repeat 522295 522517 437 + . . scaffold67 GLEAN mRNA 8473 8530 1 + . ID=CGI_10018260; scaffold67 TRF Tandem_Repeat 8473 8530 116 + . . scaffold67 GLEAN mRNA 8550 8578 1 + . ID=CGI_10018260; scaffold67 TRF Tandem_Repeat 8550 8578 58 + . . scaffold67 GLEAN mRNA 31242 31411 1 - . ID=CGI_10018261; scaffold67 TRF Tandem_Repeat 31242 31411 250 + . . scaffold67 GLEAN mRNA 28493 28807 1 - . ID=CGI_10018261; scaffold67 WUBlastX DNA_hAT-Tip100 28493 28807 58 + . . scaffold67 GLEAN mRNA 30892 30993 1 - . ID=CGI_10018261; scaffold67 WUBlastX DNA_hAT-Tip100 30892 30993 28 + . . scaffold67 GLEAN mRNA 28846 29244 1 - . ID=CGI_10018261; scaffold67 WUBlastX DNA_hAT-Tip100 28846 29244 101 + . . scaffold67 GLEAN mRNA 29223 29591 1 - . ID=CGI_10018261; scaffold67 WUBlastX DNA_hAT-Tip100 29223 29591 113 + . . scaffold67 GLEAN mRNA 30674 30766 1 - . ID=CGI_10018261; scaffold67 WUBlastX DNA_hAT-Tip100 30674 30766 30 + . . scaffold67 GLEAN mRNA 28442 28747 1 - . ID=CGI_10018261; scaffold67 WUBlastX DNA_hAT-Tip100 28442 28747 39 + . . scaffold67 GLEAN mRNA 56170 56200 0.993533 + . ID=CGI_10018262; scaffold67 TRF Tandem_Repeat 56170 56200 62 + . . scaffold67 GLEAN mRNA 64435 64505 0.993533 + . ID=CGI_10018262; scaffold67 TRF Tandem_Repeat 64435 64505 121 + . . scaffold67 GLEAN mRNA 82412 83734 0.702383 - . ID=CGI_10018264; scaffold67 WUBlastX DNA_TcMar-Tc2 82412 83734 1035 - . . scaffold67 GLEAN mRNA 90147 90341 0.702383 - . ID=CGI_10018264; scaffold67 WUBlastX DNA_IS4EU 90147 90341 40 - . . scaffold67 GLEAN mRNA 90153 90482 0.702383 - . ID=CGI_10018264; scaffold67 WUBlastX DNA_IS4EU 90153 90482 39 - . . scaffold67 GLEAN mRNA 160612 160657 0.710748 + . ID=CGI_10018267; scaffold67 TRF Tandem_Repeat 160612 160657 92 + . . scaffold67 GLEAN mRNA 181028 181064 0.997116 + . ID=CGI_10018268; scaffold67 TRF Tandem_Repeat 181028 181064 56 + . . scaffold67 GLEAN mRNA 182484 183581 0.997116 + . ID=CGI_10018268; scaffold67 TRF Tandem_Repeat 182484 183581 1955 + . . scaffold67 GLEAN mRNA 184248 184541 0.997116 + . ID=CGI_10018268; scaffold67 TRF Tandem_Repeat 184248 184541 293 + . . scaffold67 GLEAN mRNA 184275 184669 0.997116 + . ID=CGI_10018268; scaffold67 TRF Tandem_Repeat 184275 184669 170 + . . scaffold67 GLEAN mRNA 184372 184482 0.997116 + . ID=CGI_10018268; scaffold67 TRF Tandem_Repeat 184372 184482 70 + . . scaffold67 GLEAN mRNA 184979 185079 0.997116 + . ID=CGI_10018268; scaffold67 TRF Tandem_Repeat 184979 185079 80 + . . scaffold67 GLEAN mRNA 253076 253551 0.462557 - . ID=CGI_10018269; scaffold67 TRF Tandem_Repeat 253076 253551 288 + . . scaffold67 GLEAN mRNA 267396 267420 0.462557 - . ID=CGI_10018269; scaffold67 TRF Tandem_Repeat 267396 267420 50 + . . scaffold67 GLEAN mRNA 267568 267665 0.462557 - . ID=CGI_10018269; scaffold67 TRF Tandem_Repeat 267568 267665 133 + . . scaffold67 GLEAN mRNA 267747 267790 0.462557 - . ID=CGI_10018269; scaffold67 TRF Tandem_Repeat 267747 267790 88 + . . scaffold67 GLEAN mRNA 324765 324821 0.99254 + . ID=CGI_10018272; scaffold67 TRF Tandem_Repeat 324765 324821 114 + . . scaffold67 GLEAN mRNA 335480 335524 0.99254 + . ID=CGI_10018272; scaffold67 TRF Tandem_Repeat 335480 335524 63 + . . scaffold67 GLEAN mRNA 338116 338250 0.99254 + . ID=CGI_10018272; scaffold67 TRF Tandem_Repeat 338116 338250 72 + . . scaffold67 GLEAN mRNA 337918 338251 0.99254 + . ID=CGI_10018272; scaffold67 TRF Tandem_Repeat 337918 338251 424 + . . scaffold67 GLEAN mRNA 340165 340424 0.99254 + . ID=CGI_10018272; scaffold67 TRF Tandem_Repeat 340165 340424 425 + . . scaffold67 GLEAN mRNA 397974 398025 0.990037 + . ID=CGI_10018273; scaffold67 TRF Tandem_Repeat 397974 398025 104 + . . scaffold67 GLEAN mRNA 398106 398288 0.990037 + . ID=CGI_10018273; scaffold67 WUBlastX LTR_Gypsy 398106 398288 23 - . . scaffold67 GLEAN mRNA 467623 467676 1 + . ID=CGI_10018277; scaffold67 TRF Tandem_Repeat 467623 467676 101 + . . scaffold267 GLEAN mRNA 5631 5678 0.999999 - . ID=CGI_10018282; scaffold267 TRF Tandem_Repeat 5631 5678 96 + . . scaffold267 GLEAN mRNA 66121 66162 0.883587 - . ID=CGI_10018283; scaffold267 TRF Tandem_Repeat 66121 66162 84 + . . scaffold267 GLEAN mRNA 84171 84207 0.840354 - . ID=CGI_10018284; scaffold267 TRF Tandem_Repeat 84171 84207 74 + . . scaffold267 GLEAN mRNA 90670 90708 0.998586 - . ID=CGI_10018285; scaffold267 TRF Tandem_Repeat 90670 90708 60 + . . scaffold267 GLEAN mRNA 94552 94836 0.998586 - . ID=CGI_10018285; scaffold267 WUBlastX DNA_Harbinger 94552 94836 26 + . . scaffold267 GLEAN mRNA 93781 94764 0.998586 - . ID=CGI_10018285; scaffold267 WUBlastX DNA_Harbinger 93781 94764 336 + . . scaffold267 GLEAN mRNA 111018 111061 0.999351 - . ID=CGI_10018289; scaffold267 TRF Tandem_Repeat 111018 111061 61 + . . scaffold267 GLEAN mRNA 111018 111070 0.999351 - . ID=CGI_10018289; scaffold267 TRF Tandem_Repeat 111018 111070 70 + . . scaffold267 GLEAN mRNA 111718 112086 0.999351 - . ID=CGI_10018289; scaffold267 WUBlastX DNA_Maverick 111718 112086 77 - . . scaffold267 GLEAN mRNA 150923 150975 0.588634 + . ID=CGI_10018296; scaffold267 WUBlastX LTR_Gypsy 150923 150985 24 + . . scaffold267 GLEAN mRNA 161791 162304 0.999588 - . ID=CGI_10018297; scaffold267 TRF Tandem_Repeat 161791 162304 534 + . . scaffold267 GLEAN mRNA 150923 150985 0.999588 - . ID=CGI_10018297; scaffold267 WUBlastX LTR_Gypsy 150923 150985 24 + . . scaffold267 GLEAN mRNA 263328 264531 1 + . ID=CGI_10018301; scaffold267 TRF Tandem_Repeat 263328 264531 1765 + . . scaffold267 GLEAN mRNA 263328 264531 0.999026 - . ID=CGI_10018302; scaffold267 TRF Tandem_Repeat 263328 264531 1765 + . . scaffold267 GLEAN mRNA 272679 273840 0.999026 - . ID=CGI_10018302; scaffold267 TRF Tandem_Repeat 272679 273840 1567 + . . scaffold267 GLEAN mRNA 280136 280277 0.999026 - . ID=CGI_10018302; scaffold267 TRF Tandem_Repeat 280136 280277 266 + . . scaffold267 GLEAN mRNA 283874 285441 0.922088 + . ID=CGI_10018303; scaffold267 TRF Tandem_Repeat 283874 285441 1857 + . . scaffold267 GLEAN mRNA 283874 285441 0.643193 - . ID=CGI_10018304; scaffold267 TRF Tandem_Repeat 283874 285441 1857 + . . scaffold267 GLEAN mRNA 370195 370309 1 + . ID=CGI_10018307; scaffold267 TRF Tandem_Repeat 370195 370309 90 + . . scaffold267 GLEAN mRNA 367315 368316 1 + . ID=CGI_10018307; scaffold267 WUBlastX DNA_TcMar-Tc1 367315 368316 598 + . . scaffold267 GLEAN mRNA 367282 367413 1 + . ID=CGI_10018307; scaffold267 WUBlastX DNA_TcMar-Marin 367282 367413 20 + . . scaffold267 GLEAN mRNA 394386 394440 0.998077 - . ID=CGI_10018309; scaffold267 TRF Tandem_Repeat 394386 394440 110 + . . scaffold267 GLEAN mRNA 400683 400778 1 + . ID=CGI_10018310; scaffold267 TRF Tandem_Repeat 400683 400778 93 + . . scaffold267 GLEAN mRNA 400684 400782 1 + . ID=CGI_10018310; scaffold267 TRF Tandem_Repeat 400684 400782 108 + . . scaffold267 GLEAN mRNA 400696 400785 1 + . ID=CGI_10018310; scaffold267 TRF Tandem_Repeat 400696 400785 99 + . . scaffold267 GLEAN mRNA 400809 401603 1 + . ID=CGI_10018310; scaffold267 TRF Tandem_Repeat 400809 401603 1213 + . . scaffold267 GLEAN mRNA 422438 422479 0.999214 + . ID=CGI_10018311; scaffold267 TRF Tandem_Repeat 422438 422479 84 + . . scaffold267 GLEAN mRNA 423530 423567 0.999214 + . ID=CGI_10018311; scaffold267 TRF Tandem_Repeat 423530 423567 76 + . . scaffold267 GLEAN mRNA 447005 447062 0.615159 + . ID=CGI_10018312; scaffold267 TRF Tandem_Repeat 447005 447062 82 + . . scaffold267 GLEAN mRNA 457795 457844 0.615159 + . ID=CGI_10018312; scaffold267 TRF Tandem_Repeat 457795 457844 100 + . . scaffold267 GLEAN mRNA 492434 492604 1 + . ID=CGI_10018313; scaffold267 WUBlastX DNA_Kolobok 492428 492604 75 + . . scaffold267 GLEAN mRNA 492708 492878 1 + . ID=CGI_10018313; scaffold267 WUBlastX DNA_Kolobok 492708 492878 91 + . . scaffold267 GLEAN mRNA 492434 492589 1 + . ID=CGI_10018313; scaffold267 WUBlastX DNA_Kolobok 492389 492589 59 + . . scaffold267 GLEAN mRNA 493287 493478 0.739869 - . ID=CGI_10018314; scaffold267 WUBlastX DNA_Kolobok 493287 493478 84 - . . scaffold267 GLEAN mRNA 493296 493439 0.739869 - . ID=CGI_10018314; scaffold267 WUBlastX DNA_Kolobok 493296 493439 87 - . . scaffold630 GLEAN mRNA 21218 21358 0.175167 + . ID=CGI_10018322; scaffold630 TRF Tandem_Repeat 21218 21358 74 + . . scaffold630 GLEAN mRNA 29460 30491 0.175167 + . ID=CGI_10018322; scaffold630 TRF Tandem_Repeat 29460 30491 1447 + . . scaffold630 GLEAN mRNA 32304 32351 0.175167 + . ID=CGI_10018322; scaffold630 TRF Tandem_Repeat 32304 32351 96 + . . scaffold630 GLEAN mRNA 38207 38252 0.175167 + . ID=CGI_10018322; scaffold630 TRF Tandem_Repeat 38207 38252 58 + . . scaffold630 GLEAN mRNA 38425 40271 0.175167 + . ID=CGI_10018322; scaffold630 TRF Tandem_Repeat 38425 40271 2756 + . . scaffold630 GLEAN mRNA 66406 66437 0.906263 - . ID=CGI_10018324; scaffold630 TRF Tandem_Repeat 66406 66437 64 + . . scaffold630 GLEAN mRNA 84705 84741 0.970045 - . ID=CGI_10018325; scaffold630 TRF Tandem_Repeat 84705 84741 74 + . . scaffold630 GLEAN mRNA 86423 86587 0.970045 - . ID=CGI_10018325; scaffold630 TRF Tandem_Repeat 86423 86587 197 + . . scaffold630 GLEAN mRNA 86657 86797 0.970045 - . ID=CGI_10018325; scaffold630 TRF Tandem_Repeat 86657 86797 131 + . . scaffold630 GLEAN mRNA 85561 86178 0.970045 - . ID=CGI_10018325; scaffold630 WUBlastX LINE_RTE-X 85561 86178 77 + . . scaffold630 GLEAN mRNA 85669 86301 0.970045 - . ID=CGI_10018325; scaffold630 WUBlastX LINE_RTE-X 85669 86301 63 + . . scaffold630 GLEAN mRNA 86995 87288 0.970045 - . ID=CGI_10018325; scaffold630 WUBlastX LINE_RTE-X 86995 87288 105 + . . scaffold630 GLEAN mRNA 85669 86178 0.970045 - . ID=CGI_10018325; scaffold630 WUBlastX LINE_RTE-X 85669 86178 101 + . . scaffold630 GLEAN mRNA 165732 165785 0.544823 - . ID=CGI_10018328; scaffold630 TRF Tandem_Repeat 165732 165785 99 + . . scaffold630 GLEAN mRNA 231539 231565 0.999747 - . ID=CGI_10018329; scaffold630 TRF Tandem_Repeat 231539 231565 54 + . . scaffold630 GLEAN mRNA 235356 236330 0.999747 - . ID=CGI_10018329; scaffold630 WUBlastX LINE_L1-Tx1 235356 236330 188 - . . scaffold630 GLEAN mRNA 241041 241095 0.61505 + . ID=CGI_10018330; scaffold630 TRF Tandem_Repeat 241041 241095 110 + . . scaffold630 GLEAN mRNA 235356 236330 0.61505 + . ID=CGI_10018330; scaffold630 WUBlastX LINE_L1-Tx1 235356 236330 188 - . . scaffold630 GLEAN mRNA 260073 260135 0.970951 + . ID=CGI_10018331; scaffold630 TRF Tandem_Repeat 260073 260135 117 + . . scaffold630 GLEAN mRNA 260785 260828 0.970951 + . ID=CGI_10018331; scaffold630 TRF Tandem_Repeat 260785 260828 61 + . . scaffold630 GLEAN mRNA 260786 260835 0.970951 + . ID=CGI_10018331; scaffold630 TRF Tandem_Repeat 260786 260835 55 + . . scaffold630 GLEAN mRNA 260859 261983 0.970951 + . ID=CGI_10018331; scaffold630 TRF Tandem_Repeat 260859 261983 1693 + . . scaffold630 GLEAN mRNA 265223 265355 0.970951 + . ID=CGI_10018331; scaffold630 TRF Tandem_Repeat 265223 265355 101 + . . scaffold630 GLEAN mRNA 341276 342256 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Gypsy 341276 342256 51 - . . scaffold630 GLEAN mRNA 341558 342256 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Gypsy 341558 342256 494 - . . scaffold630 GLEAN mRNA 342925 343101 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Gypsy 342925 343101 166 - . . scaffold630 GLEAN mRNA 343100 343228 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Gypsy 343100 343228 108 - . . scaffold630 GLEAN mRNA 342931 343140 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Gypsy 342931 343140 135 - . . scaffold630 GLEAN mRNA 342259 342489 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Gypsy 342259 342489 251 - . . scaffold630 GLEAN mRNA 342483 342965 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Gypsy 342483 342965 400 - . . scaffold630 GLEAN mRNA 341047 341160 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Copia 341047 341160 20 - . . scaffold630 GLEAN mRNA 352522 352698 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LINE_I 352522 352698 26 - . . scaffold630 GLEAN mRNA 349669 350712 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LINE_L1-Tx1 349669 350712 183 - . . scaffold630 GLEAN mRNA 350700 351287 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LINE_L1-Tx1 350700 351287 296 - . . scaffold630 GLEAN mRNA 351256 351963 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LINE_L1-Tx1 351256 351963 527 - . . scaffold630 GLEAN mRNA 352795 353433 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LINE_L1 352795 353433 89 - . . scaffold630 GLEAN mRNA 352561 352818 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LINE_L2 352561 352818 38 - . . scaffold630 GLEAN mRNA 374128 375498 0.98161 - . ID=CGI_10018333; scaffold630 WUBlastX LTR_Gypsy 374128 375498 1108 - . . scaffold630 GLEAN mRNA 374131 375750 0.98161 - . ID=CGI_10018333; scaffold630 WUBlastX LTR_Gypsy 374131 375750 342 - . . scaffold630 GLEAN mRNA 373614 373658 0.98161 - . ID=CGI_10018333; scaffold630 WUBlastX LTR_Gypsy 373614 373658 20 - . . scaffold630 GLEAN mRNA 375671 375925 0.98161 - . ID=CGI_10018333; scaffold630 WUBlastX LTR_Gypsy 375671 375925 74 - . . scaffold630 GLEAN mRNA 375623 375883 0.98161 - . ID=CGI_10018333; scaffold630 WUBlastX LTR_Gypsy 375623 375883 190 - . . scaffold630 GLEAN mRNA 377917 378702 0.98161 - . ID=CGI_10018333; scaffold630 WUBlastX LTR_Gypsy 377917 378702 280 - . . scaffold630 GLEAN mRNA 393094 393133 0.988214 + . ID=CGI_10018334; scaffold630 TRF Tandem_Repeat 393094 393133 80 + . . scaffold630 GLEAN mRNA 395455 395516 0.988214 + . ID=CGI_10018334; scaffold630 TRF Tandem_Repeat 395455 395516 124 + . . scaffold630 GLEAN mRNA 398180 398247 0.988214 + . ID=CGI_10018334; scaffold630 TRF Tandem_Repeat 398180 398247 136 + . . scaffold630 GLEAN mRNA 400531 400566 0.988214 + . ID=CGI_10018334; scaffold630 TRF Tandem_Repeat 400531 400566 54 + . . scaffold630 GLEAN mRNA 401522 401596 0.988214 + . ID=CGI_10018334; scaffold630 TRF Tandem_Repeat 401522 401596 150 + . . scaffold630 GLEAN mRNA 402256 402286 0.988214 + . ID=CGI_10018334; scaffold630 TRF Tandem_Repeat 402256 402286 62 + . . scaffold630 GLEAN mRNA 407550 407585 0.988214 + . ID=CGI_10018334; scaffold630 TRF Tandem_Repeat 407550 407585 72 + . . scaffold630 GLEAN mRNA 407831 407892 0.988214 + . ID=CGI_10018334; scaffold630 TRF Tandem_Repeat 407831 407892 124 + . . scaffold630 GLEAN mRNA 410674 410724 0.988214 + . ID=CGI_10018334; scaffold630 TRF Tandem_Repeat 410674 410724 102 + . . scaffold630 GLEAN mRNA 433427 433474 0.990209 - . ID=CGI_10018335; scaffold630 TRF Tandem_Repeat 432408 433474 899 + . . scaffold630 GLEAN mRNA 433427 433476 0.990209 - . ID=CGI_10018335; scaffold630 TRF Tandem_Repeat 432764 433476 1115 + . . scaffold630 GLEAN mRNA 436889 437115 0.990209 - . ID=CGI_10018335; scaffold630 TRF Tandem_Repeat 436889 437115 391 + . . scaffold630 GLEAN mRNA 445766 446034 0.593285 + . ID=CGI_10018336; scaffold630 TRF Tandem_Repeat 445766 446034 493 + . . scaffold630 GLEAN mRNA 524481 524514 0.289599 + . ID=CGI_10018340; scaffold630 TRF Tandem_Repeat 524481 524514 59 + . . scaffold514 GLEAN mRNA 16266 16422 0.999593 + . ID=CGI_10018343; scaffold514 TRF Tandem_Repeat 16266 16422 129 + . . scaffold514 GLEAN mRNA 22260 22756 0.999944 + . ID=CGI_10018344; scaffold514 TRF Tandem_Repeat 22260 22756 165 + . . scaffold514 GLEAN mRNA 22363 22763 0.999944 + . ID=CGI_10018344; scaffold514 TRF Tandem_Repeat 22363 22763 283 + . . scaffold514 GLEAN mRNA 25651 26642 0.999944 + . ID=CGI_10018344; scaffold514 TRF Tandem_Repeat 25651 26642 1188 + . . scaffold514 GLEAN mRNA 54100 54128 0.499589 + . ID=CGI_10018345; scaffold514 TRF Tandem_Repeat 54100 54128 58 + . . scaffold514 GLEAN mRNA 74087 74432 0.383041 - . ID=CGI_10018346; scaffold514 TRF Tandem_Repeat 74087 74432 529 + . . scaffold514 GLEAN mRNA 74091 74432 0.383041 - . ID=CGI_10018346; scaffold514 TRF Tandem_Repeat 74091 74432 585 + . . scaffold514 GLEAN mRNA 87981 88757 0.383041 - . ID=CGI_10018346; scaffold514 WUBlastX LTR_Gypsy 87981 88757 76 + . . scaffold514 GLEAN mRNA 89716 90645 0.383041 - . ID=CGI_10018346; scaffold514 WUBlastX LTR_DIRS 89716 90645 558 + . . scaffold514 GLEAN mRNA 88753 88836 0.383041 - . ID=CGI_10018346; scaffold514 WUBlastX LTR_Gypsy 88753 88836 23 + . . scaffold514 GLEAN mRNA 88173 88757 0.383041 - . ID=CGI_10018346; scaffold514 WUBlastX LTR_DIRS 88173 88757 399 + . . scaffold514 GLEAN mRNA 88778 89833 0.383041 - . ID=CGI_10018346; scaffold514 WUBlastX LTR_DIRS 88778 89833 661 + . . scaffold514 GLEAN mRNA 87698 87862 0.383041 - . ID=CGI_10018346; scaffold514 WUBlastX LTR_Gypsy 87698 87862 26 + . . scaffold514 GLEAN mRNA 108943 109003 0.383041 - . ID=CGI_10018346; scaffold514 TRF Tandem_Repeat 108943 109003 88 + . . scaffold514 GLEAN mRNA 108940 109003 0.383041 - . ID=CGI_10018346; scaffold514 TRF Tandem_Repeat 108940 109003 92 + . . scaffold514 GLEAN mRNA 109755 109914 0.383041 - . ID=CGI_10018346; scaffold514 TRF Tandem_Repeat 109755 109914 196 + . . scaffold514 GLEAN mRNA 186336 187091 0.701147 + . ID=CGI_10018348; scaffold514 TRF Tandem_Repeat 186336 187091 505 + . . scaffold514 GLEAN mRNA 190304 190336 0.701147 + . ID=CGI_10018348; scaffold514 TRF Tandem_Repeat 190304 190336 66 + . . scaffold514 GLEAN mRNA 191442 191492 0.701147 + . ID=CGI_10018348; scaffold514 TRF Tandem_Repeat 191442 191492 102 + . . scaffold514 GLEAN mRNA 194056 194109 0.768973 + . ID=CGI_10018349; scaffold514 TRF Tandem_Repeat 194056 194109 90 + . . scaffold514 GLEAN mRNA 198311 198360 0.768973 + . ID=CGI_10018349; scaffold514 TRF Tandem_Repeat 198311 198360 75 + . . scaffold514 GLEAN mRNA 198312 198357 0.768973 + . ID=CGI_10018349; scaffold514 TRF Tandem_Repeat 198312 198357 67 + . . scaffold514 GLEAN mRNA 199797 200858 0.768973 + . ID=CGI_10018349; scaffold514 TRF Tandem_Repeat 199797 200858 1390 + . . scaffold514 GLEAN mRNA 220552 220592 0.993358 + . ID=CGI_10018353; scaffold514 TRF Tandem_Repeat 220552 220592 82 + . . scaffold514 GLEAN mRNA 267232 267278 0.5 - . ID=CGI_10018355; scaffold514 TRF Tandem_Repeat 267232 267278 85 + . . scaffold514 GLEAN mRNA 324510 324575 0.855899 - . ID=CGI_10018357; scaffold514 TRF Tandem_Repeat 324510 324575 132 + . . scaffold514 GLEAN mRNA 324705 324841 0.855899 - . ID=CGI_10018357; scaffold514 TRF Tandem_Repeat 324705 324841 274 + . . scaffold514 GLEAN mRNA 326189 326226 0.855899 - . ID=CGI_10018357; scaffold514 TRF Tandem_Repeat 326189 326226 76 + . . scaffold514 GLEAN mRNA 387099 387244 0.971624 + . ID=CGI_10018362; scaffold514 TRF Tandem_Repeat 387099 387244 256 + . . scaffold514 GLEAN mRNA 394692 394725 0.971624 + . ID=CGI_10018362; scaffold514 TRF Tandem_Repeat 394692 394725 68 + . . scaffold514 GLEAN mRNA 452039 452080 0.661186 - . ID=CGI_10018365; scaffold514 TRF Tandem_Repeat 452039 452080 84 + . . scaffold514 GLEAN mRNA 456049 456459 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 456049 456459 180 - . . scaffold514 GLEAN mRNA 456420 456998 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 456420 456998 172 - . . scaffold514 GLEAN mRNA 457183 457326 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 457183 457326 29 - . . scaffold514 GLEAN mRNA 456378 456866 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 456378 456866 390 - . . scaffold514 GLEAN mRNA 455980 456426 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 455980 456426 109 - . . scaffold514 GLEAN mRNA 471676 471915 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 471676 471915 53 + . . scaffold514 GLEAN mRNA 471724 472077 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 471724 472077 103 + . . scaffold514 GLEAN mRNA 472414 472674 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 472414 472674 59 + . . scaffold514 GLEAN mRNA 471605 471691 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 471605 471691 20 + . . scaffold514 GLEAN mRNA 471715 471948 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 471715 471948 128 + . . scaffold514 GLEAN mRNA 472194 472424 0.661186 - . ID=CGI_10018365; scaffold514 WUBlastX LTR_Gypsy 472194 472424 66 + . . scaffold514 GLEAN mRNA 503241 503335 0.992486 + . ID=CGI_10018367; scaffold514 TRF Tandem_Repeat 503241 503335 77 + . . scaffold514 GLEAN mRNA 515990 516022 0.999999 + . ID=CGI_10018368; scaffold514 TRF Tandem_Repeat 515990 516022 66 + . . scaffold514 GLEAN mRNA 518032 518087 0.999999 + . ID=CGI_10018368; scaffold514 TRF Tandem_Repeat 518032 518087 103 + . . scaffold1324 GLEAN mRNA 16331 16384 0.98702 - . ID=CGI_10018371; scaffold1324 TRF Tandem_Repeat 16331 16384 108 + . . scaffold1324 GLEAN mRNA 19636 19941 0.98702 - . ID=CGI_10018371; scaffold1324 WUBlastX LINE_Penelope 19636 19941 111 + . . scaffold1324 GLEAN mRNA 48432 48849 0.808329 + . ID=CGI_10018375; scaffold1324 TRF Tandem_Repeat 48432 48849 631 + . . scaffold1324 GLEAN mRNA 62392 63111 0.808329 + . ID=CGI_10018375; scaffold1324 TRF Tandem_Repeat 62392 63111 1039 + . . scaffold1324 GLEAN mRNA 62403 63111 0.808329 + . ID=CGI_10018375; scaffold1324 TRF Tandem_Repeat 62403 63111 1032 + . . scaffold1324 GLEAN mRNA 64145 64198 0.808329 + . ID=CGI_10018375; scaffold1324 TRF Tandem_Repeat 64145 64198 108 + . . scaffold1324 GLEAN mRNA 65499 65525 0.808329 + . ID=CGI_10018375; scaffold1324 TRF Tandem_Repeat 65499 65525 54 + . . scaffold1324 GLEAN mRNA 85772 86104 0.507528 + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 85772 86104 422 + . . scaffold1324 GLEAN mRNA 85626 86104 0.507528 + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 85626 86104 548 + . . scaffold1324 GLEAN mRNA 88385 88658 0.507528 + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 88385 88658 383 + . . scaffold1324 GLEAN mRNA 89278 89732 0.507528 + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 89278 89732 253 + . . scaffold1324 GLEAN mRNA 89267 89759 0.507528 + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 89267 89759 611 + . . scaffold1324 GLEAN mRNA 91290 91651 0.507528 + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 91290 91651 347 + . . scaffold1324 GLEAN mRNA 93868 94988 0.507528 + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 93868 94988 1503 + . . scaffold1324 GLEAN mRNA 93963 94096 0.507528 + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 93963 94096 68 + . . scaffold1324 GLEAN mRNA 93990 94121 0.507528 + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 93990 94121 75 + . . scaffold1324 GLEAN mRNA 107750 107830 0.507528 + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 107750 107830 162 + . . scaffold1324 GLEAN mRNA 107841 107872 0.507528 + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 107841 107872 64 + . . scaffold1324 GLEAN mRNA 107870 107896 0.507528 + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 107870 107896 54 + . . scaffold1324 GLEAN mRNA 135614 137345 0.997654 + . ID=CGI_10018381; scaffold1324 TRF Tandem_Repeat 135614 137345 1732 + . . scaffold1324 GLEAN mRNA 145128 145495 0.997654 + . ID=CGI_10018381; scaffold1324 TRF Tandem_Repeat 145128 145495 607 + . . scaffold1324 GLEAN mRNA 152153 152191 0.997654 + . ID=CGI_10018381; scaffold1324 TRF Tandem_Repeat 152153 152191 78 + . . scaffold1324 GLEAN mRNA 145128 145495 0.841132 - . ID=CGI_10018382; scaffold1324 TRF Tandem_Repeat 145128 145495 607 + . . scaffold1324 GLEAN mRNA 164658 164880 0.999364 + . ID=CGI_10018383; scaffold1324 TRF Tandem_Repeat 164658 164880 331 + . . scaffold1324 GLEAN mRNA 174066 174096 0.999286 + . ID=CGI_10018384; scaffold1324 TRF Tandem_Repeat 174066 174096 53 + . . scaffold1324 GLEAN mRNA 175898 176323 0.999286 + . ID=CGI_10018384; scaffold1324 TRF Tandem_Repeat 175898 176323 640 + . . scaffold1324 GLEAN mRNA 192534 192599 1 + . ID=CGI_10018386; scaffold1324 TRF Tandem_Repeat 192534 192599 132 + . . scaffold1324 GLEAN mRNA 193174 193274 1 + . ID=CGI_10018386; scaffold1324 TRF Tandem_Repeat 193174 193274 139 + . . scaffold1324 GLEAN mRNA 233894 234513 0.999351 - . ID=CGI_10018391; scaffold1324 TRF Tandem_Repeat 233894 234513 1006 + . . scaffold1324 GLEAN mRNA 235409 235492 0.999351 - . ID=CGI_10018391; scaffold1324 TRF Tandem_Repeat 235409 235492 141 + . . scaffold1324 GLEAN mRNA 240122 240482 0.999351 - . ID=CGI_10018391; scaffold1324 TRF Tandem_Repeat 240122 240482 560 + . . scaffold1324 GLEAN mRNA 246663 246719 0.999351 - . ID=CGI_10018391; scaffold1324 TRF Tandem_Repeat 246663 246719 114 + . . scaffold1324 GLEAN mRNA 248576 249321 0.999351 - . ID=CGI_10018391; scaffold1324 TRF Tandem_Repeat 248576 249321 974 + . . scaffold1324 GLEAN mRNA 314310 315364 0.84986 - . ID=CGI_10018395; scaffold1324 TRF Tandem_Repeat 314310 315364 1090 + . . scaffold1324 GLEAN mRNA 321393 321438 0.84986 - . ID=CGI_10018395; scaffold1324 TRF Tandem_Repeat 321393 321438 92 + . . scaffold1324 GLEAN mRNA 322882 322935 0.84986 - . ID=CGI_10018395; scaffold1324 TRF Tandem_Repeat 322882 322935 92 + . . scaffold1324 GLEAN mRNA 323866 324840 0.84986 - . ID=CGI_10018395; scaffold1324 WUBlastX DNA_TcMar-Tc1 323866 324840 318 + . . scaffold1324 GLEAN mRNA 523037 523132 0.972343 - . ID=CGI_10018403; scaffold1324 TRF Tandem_Repeat 523037 523132 178 + . . scaffold1352 GLEAN mRNA 51896 51952 0.997083 - . ID=CGI_10018408; scaffold1352 TRF Tandem_Repeat 51896 51952 114 + . . scaffold1352 GLEAN mRNA 169453 169504 0.640433 - . ID=CGI_10018412; scaffold1352 TRF Tandem_Repeat 169453 169504 104 + . . scaffold1352 GLEAN mRNA 175390 175421 0.640433 - . ID=CGI_10018412; scaffold1352 TRF Tandem_Repeat 175390 175421 55 + . . scaffold1352 GLEAN mRNA 177098 177182 0.640433 - . ID=CGI_10018412; scaffold1352 TRF Tandem_Repeat 177098 177182 53 + . . scaffold1352 GLEAN mRNA 177203 177282 0.640433 - . ID=CGI_10018412; scaffold1352 TRF Tandem_Repeat 177203 177282 54 + . . scaffold1352 GLEAN mRNA 177970 178012 0.640433 - . ID=CGI_10018412; scaffold1352 TRF Tandem_Repeat 177970 178012 86 + . . scaffold1352 GLEAN mRNA 178122 178160 0.640433 - . ID=CGI_10018412; scaffold1352 TRF Tandem_Repeat 178122 178160 78 + . . scaffold1352 GLEAN mRNA 172261 173013 0.640433 - . ID=CGI_10018412; scaffold1352 WUBlastX DNA_TcMar-Tc1 172261 173013 153 - . . scaffold1352 GLEAN mRNA 172861 173193 0.640433 - . ID=CGI_10018412; scaffold1352 WUBlastX DNA_TcMar-Tc1 172861 173193 49 - . . scaffold1352 GLEAN mRNA 183767 183833 0.640433 - . ID=CGI_10018412; scaffold1352 TRF Tandem_Repeat 183767 183833 80 + . . scaffold1352 GLEAN mRNA 185381 185447 0.640433 - . ID=CGI_10018412; scaffold1352 TRF Tandem_Repeat 185381 185447 82 + . . scaffold1352 GLEAN mRNA 221577 221606 0.392918 - . ID=CGI_10018413; scaffold1352 TRF Tandem_Repeat 221577 221606 51 + . . scaffold1352 GLEAN mRNA 217162 217428 0.392918 - . ID=CGI_10018413; scaffold1352 WUBlastX LINE_L1 217162 217428 91 - . . scaffold1352 GLEAN mRNA 217165 217584 0.392918 - . ID=CGI_10018413; scaffold1352 WUBlastX LINE_L1 217165 217584 52 - . . scaffold1352 GLEAN mRNA 217174 217395 0.392918 - . ID=CGI_10018413; scaffold1352 WUBlastX LINE_L1-Tx1 217174 217395 133 - . . scaffold1352 GLEAN mRNA 237646 237678 0.998601 - . ID=CGI_10018416; scaffold1352 TRF Tandem_Repeat 237646 237678 66 + . . scaffold1352 GLEAN mRNA 244666 244699 0.998601 - . ID=CGI_10018416; scaffold1352 TRF Tandem_Repeat 244666 244699 50 + . . scaffold1352 GLEAN mRNA 300405 300613 0.838486 + . ID=CGI_10018423; scaffold1352 TRF Tandem_Repeat 300405 300613 102 + . . scaffold1352 GLEAN mRNA 400730 400771 0.333165 + . ID=CGI_10018425; scaffold1352 TRF Tandem_Repeat 400730 400771 68 + . . scaffold1352 GLEAN mRNA 402393 402536 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_RTE-X 402393 402536 41 + . . scaffold1352 GLEAN mRNA 404175 404543 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_RTE-X 404175 404543 114 + . . scaffold1352 GLEAN mRNA 402990 403373 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_RTE-X 402990 403373 29 + . . scaffold1352 GLEAN mRNA 402972 403022 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_RTE 402972 403022 24 + . . scaffold1352 GLEAN mRNA 401497 401757 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_L2 401497 401757 75 + . . scaffold1352 GLEAN mRNA 403072 403155 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_RTE-X 403072 403155 38 + . . scaffold1352 GLEAN mRNA 402007 402435 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_RTE-X 402007 402435 85 + . . scaffold1352 GLEAN mRNA 403387 404196 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_RTE-X 403387 404196 165 + . . scaffold1352 GLEAN mRNA 403200 403373 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_RTE-X 403200 403373 45 + . . scaffold1352 GLEAN mRNA 401494 401817 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_L1-Tx1 401494 401817 48 + . . scaffold1352 GLEAN mRNA 401986 402366 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_RTE-X 401986 402366 154 + . . scaffold1352 GLEAN mRNA 402330 402494 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_RTE-X 402330 402494 49 + . . scaffold1352 GLEAN mRNA 403722 405050 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_RTE-X 403722 405050 37 + . . scaffold1352 GLEAN mRNA 402384 402626 0.333165 + . ID=CGI_10018425; scaffold1352 WUBlastX LINE_RTE-X 402384 402626 23 + . . scaffold1352 GLEAN mRNA 453033 453086 0.306187 + . ID=CGI_10018429; scaffold1352 TRF Tandem_Repeat 453033 453086 81 + . . scaffold1352 GLEAN mRNA 495643 495673 0.647789 - . ID=CGI_10018431; scaffold1352 TRF Tandem_Repeat 495643 495673 62 + . . scaffold632 GLEAN mRNA 5536 5573 0.989235 + . ID=CGI_10018432; scaffold632 TRF Tandem_Repeat 5536 5573 76 + . . scaffold632 GLEAN mRNA 9442 9507 0.989235 + . ID=CGI_10018432; scaffold632 TRF Tandem_Repeat 9442 9507 132 + . . scaffold632 GLEAN mRNA 13480 13523 0.989235 + . ID=CGI_10018432; scaffold632 TRF Tandem_Repeat 13480 13523 88 + . . scaffold632 GLEAN mRNA 14378 14423 0.989235 + . ID=CGI_10018432; scaffold632 TRF Tandem_Repeat 14378 14423 92 + . . scaffold632 GLEAN mRNA 14555 14596 0.989235 + . ID=CGI_10018432; scaffold632 TRF Tandem_Repeat 14555 14596 77 + . . scaffold632 GLEAN mRNA 18600 18938 0.989235 + . ID=CGI_10018432; scaffold632 TRF Tandem_Repeat 18600 18938 505 + . . scaffold632 GLEAN mRNA 74205 74252 0.992939 + . ID=CGI_10018436; scaffold632 TRF Tandem_Repeat 74205 74252 96 + . . scaffold632 GLEAN mRNA 94211 94276 0.991776 + . ID=CGI_10018438; scaffold632 WUBlastX LTR_Pao 94157 94276 32 + . . scaffold632 GLEAN mRNA 94232 95134 0.991776 + . ID=CGI_10018438; scaffold632 WUBlastX LTR_Pao 94232 95134 101 + . . scaffold632 GLEAN mRNA 94565 98128 0.991776 + . ID=CGI_10018438; scaffold632 WUBlastX LTR_Pao 94565 98128 2301 + . . scaffold632 GLEAN mRNA 100636 100744 0.991776 + . ID=CGI_10018438; scaffold632 TRF Tandem_Repeat 100636 100744 157 + . . scaffold632 GLEAN mRNA 101296 101383 0.991776 + . ID=CGI_10018438; scaffold632 TRF Tandem_Repeat 101296 101383 149 + . . scaffold632 GLEAN mRNA 102139 102180 0.991776 + . ID=CGI_10018438; scaffold632 TRF Tandem_Repeat 102139 102180 84 + . . scaffold632 GLEAN mRNA 102810 102892 0.991776 + . ID=CGI_10018438; scaffold632 TRF Tandem_Repeat 102810 102892 148 + . . scaffold632 GLEAN mRNA 106074 106455 0.991776 + . ID=CGI_10018438; scaffold632 TRF Tandem_Repeat 106074 106455 466 + . . scaffold632 GLEAN mRNA 102810 102892 0.69366 - . ID=CGI_10018439; scaffold632 TRF Tandem_Repeat 102810 102892 148 + . . scaffold632 GLEAN mRNA 106074 106455 0.69366 - . ID=CGI_10018439; scaffold632 TRF Tandem_Repeat 106074 106455 466 + . . scaffold632 GLEAN mRNA 184194 184361 0.99991 + . ID=CGI_10018444; scaffold632 TRF Tandem_Repeat 184194 184361 160 + . . scaffold632 GLEAN mRNA 195672 196031 1 + . ID=CGI_10018445; scaffold632 TRF Tandem_Repeat 195672 196031 456 + . . scaffold632 GLEAN mRNA 204886 204973 0.999654 + . ID=CGI_10018446; scaffold632 TRF Tandem_Repeat 204886 204973 149 + . . scaffold632 GLEAN mRNA 205706 205884 0.999654 + . ID=CGI_10018446; scaffold632 TRF Tandem_Repeat 205706 205884 322 + . . scaffold632 GLEAN mRNA 206369 206412 0.999654 + . ID=CGI_10018446; scaffold632 TRF Tandem_Repeat 206369 206412 88 + . . scaffold632 GLEAN mRNA 208023 208366 0.999654 + . ID=CGI_10018446; scaffold632 TRF Tandem_Repeat 208023 208366 517 + . . scaffold632 GLEAN mRNA 212750 212916 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 212750 212916 129 + . . scaffold632 GLEAN mRNA 213036 213391 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 213036 213391 276 + . . scaffold632 GLEAN mRNA 213420 213610 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 213420 213610 269 + . . scaffold632 GLEAN mRNA 213647 214086 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 213647 214086 193 + . . scaffold632 GLEAN mRNA 213714 214086 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 213714 214086 447 + . . scaffold632 GLEAN mRNA 214541 214693 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 214541 214693 109 + . . scaffold632 GLEAN mRNA 216318 216360 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 216318 216360 86 + . . scaffold632 GLEAN mRNA 216395 216429 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 216395 216429 70 + . . scaffold632 GLEAN mRNA 216791 216868 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 216791 216868 156 + . . scaffold632 GLEAN mRNA 218383 218987 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 218383 218987 834 + . . scaffold632 GLEAN mRNA 218383 218993 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 218383 218993 892 + . . scaffold632 GLEAN mRNA 222043 222231 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 222043 222231 369 + . . scaffold632 GLEAN mRNA 223527 223607 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 223527 223607 146 + . . scaffold632 GLEAN mRNA 229433 229464 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 229433 229464 64 + . . scaffold632 GLEAN mRNA 253050 253141 0.888794 + . ID=CGI_10018448; scaffold632 TRF Tandem_Repeat 253050 253141 150 + . . scaffold632 GLEAN mRNA 271859 274405 0.999129 + . ID=CGI_10018450; scaffold632 WUBlastX LINE_RTE-X 271793 274405 843 + . . scaffold632 GLEAN mRNA 274500 274961 0.999129 + . ID=CGI_10018450; scaffold632 WUBlastX LINE_RTE-X 274500 274961 140 + . . scaffold632 GLEAN mRNA 274425 275033 0.999129 + . ID=CGI_10018450; scaffold632 WUBlastX LINE_RTE-X 274425 275033 124 + . . scaffold632 GLEAN mRNA 272585 274468 0.999129 + . ID=CGI_10018450; scaffold632 WUBlastX LINE_RTE-X 272585 274468 957 + . . scaffold632 GLEAN mRNA 282037 282061 1 + . ID=CGI_10018451; scaffold632 TRF Tandem_Repeat 282037 282061 50 + . . scaffold632 GLEAN mRNA 320474 320754 0.999981 + . ID=CGI_10018454; scaffold632 TRF Tandem_Repeat 320474 320754 367 + . . scaffold632 GLEAN mRNA 320828 320953 0.999981 + . ID=CGI_10018454; scaffold632 TRF Tandem_Repeat 320828 320953 139 + . . scaffold632 GLEAN mRNA 320987 321175 0.999981 + . ID=CGI_10018454; scaffold632 TRF Tandem_Repeat 320987 321175 207 + . . scaffold632 GLEAN mRNA 324472 324926 0.999981 + . ID=CGI_10018454; scaffold632 TRF Tandem_Repeat 324472 324926 479 + . . scaffold632 GLEAN mRNA 348330 348496 1 + . ID=CGI_10018456; scaffold632 TRF Tandem_Repeat 348330 348496 140 + . . scaffold632 GLEAN mRNA 384224 385055 0.813894 - . ID=CGI_10018457; scaffold632 TRF Tandem_Repeat 384224 385055 1075 + . . scaffold632 GLEAN mRNA 391390 391420 0.813894 - . ID=CGI_10018457; scaffold632 TRF Tandem_Repeat 391390 391420 62 + . . scaffold632 GLEAN mRNA 392291 392329 0.813894 - . ID=CGI_10018457; scaffold632 TRF Tandem_Repeat 392291 392329 53 + . . scaffold632 GLEAN mRNA 394295 394640 0.813894 - . ID=CGI_10018457; scaffold632 TRF Tandem_Repeat 394295 394640 185 + . . scaffold632 GLEAN mRNA 401673 402037 0.813894 - . ID=CGI_10018457; scaffold632 TRF Tandem_Repeat 401673 402037 387 + . . scaffold632 GLEAN mRNA 405709 405760 0.813894 - . ID=CGI_10018457; scaffold632 TRF Tandem_Repeat 405709 405760 52 + . . scaffold632 GLEAN mRNA 439691 440188 0.99507 + . ID=CGI_10018459; scaffold632 WUBlastX LTR_Pao 439691 440188 35 + . . scaffold632 GLEAN mRNA 483426 483692 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L1-Tx1 483426 483692 181 + . . scaffold632 GLEAN mRNA 482905 483102 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L2 482905 483102 50 - . . scaffold632 GLEAN mRNA 483695 484015 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L1-Tx1 483695 484015 219 + . . scaffold632 GLEAN mRNA 484036 484575 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L1-Tx1 484036 484575 183 + . . scaffold632 GLEAN mRNA 484649 485137 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L1-Tx1 484649 485137 40 + . . scaffold632 GLEAN mRNA 483360 483686 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L1 483360 483686 82 + . . scaffold632 GLEAN mRNA 483310 483345 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L1-Tx1 483310 483345 22 + . . scaffold632 GLEAN mRNA 482773 483162 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_CR1 482773 483162 42 - . . scaffold632 GLEAN mRNA 482321 482776 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L2 480701 482776 633 - . . scaffold632 GLEAN mRNA 485814 486158 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L1-Tx1 485814 486158 70 + . . scaffold632 GLEAN mRNA 485766 486173 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L1 485766 486173 42 + . . scaffold632 GLEAN mRNA 482773 482964 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_CR1 482773 482964 63 - . . scaffold632 GLEAN mRNA 492969 493708 0.258351 - . ID=CGI_10018460; scaffold632 TRF Tandem_Repeat 492969 493708 848 + . . scaffold632 GLEAN mRNA 494347 494781 0.258351 - . ID=CGI_10018460; scaffold632 TRF Tandem_Repeat 494347 494781 556 + . . scaffold632 GLEAN mRNA 502654 502876 0.258351 - . ID=CGI_10018460; scaffold632 TRF Tandem_Repeat 502654 502876 446 + . . scaffold632 GLEAN mRNA 512442 512500 0.258351 - . ID=CGI_10018460; scaffold632 TRF Tandem_Repeat 512442 512500 118 + . . scaffold632 GLEAN mRNA 511258 511317 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L2 511258 511317 22 - . . scaffold632 GLEAN mRNA 510186 511268 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_CR1-L2 510186 511268 589 - . . scaffold632 GLEAN mRNA 512617 512727 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L2 512617 512727 48 - . . scaffold632 GLEAN mRNA 512605 512808 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L2 512605 512808 38 - . . scaffold632 GLEAN mRNA 511376 511618 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_CR1-L2 511376 511618 59 - . . scaffold632 GLEAN mRNA 512581 512712 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L2 512581 512712 35 - . . scaffold632 GLEAN mRNA 512075 512122 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L2 512075 512122 22 - . . scaffold632 GLEAN mRNA 512090 512128 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L1 512090 512128 21 - . . scaffold632 GLEAN mRNA 511304 511612 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_CR1 511304 511612 40 - . . scaffold632 GLEAN mRNA 511602 511799 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_CR1-L2 511602 511799 98 - . . scaffold632 GLEAN mRNA 512635 512727 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L2 512635 512727 64 - . . scaffold632 GLEAN mRNA 511617 511838 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_CR1-L2 511617 511838 90 - . . scaffold632 GLEAN mRNA 509467 510576 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_L2 509467 510576 215 - . . scaffold632 GLEAN mRNA 511810 511959 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_CR1-L2 511810 511959 27 - . . scaffold632 GLEAN mRNA 539275 539312 1 - . ID=CGI_10018463; scaffold632 TRF Tandem_Repeat 539275 539312 58 + . . scaffold632 GLEAN mRNA 541959 542005 1 - . ID=CGI_10018463; scaffold632 TRF Tandem_Repeat 541959 542005 62 + . . scaffold632 GLEAN mRNA 543207 544074 1 - . ID=CGI_10018463; scaffold632 TRF Tandem_Repeat 543207 544074 1479 + . . scaffold632 GLEAN mRNA 547170 547222 1 - . ID=CGI_10018463; scaffold632 TRF Tandem_Repeat 547170 547222 106 + . . scaffold1832 GLEAN mRNA 9241 9914 0.999026 + . ID=CGI_10018464; scaffold1832 TRF Tandem_Repeat 9241 9914 1014 + . . scaffold1832 GLEAN mRNA 13119 13152 0.999026 + . ID=CGI_10018464; scaffold1832 TRF Tandem_Repeat 13119 13152 52 + . . scaffold1832 GLEAN mRNA 27341 27518 0.999026 + . ID=CGI_10018464; scaffold1832 TRF Tandem_Repeat 27341 27518 297 + . . scaffold1832 GLEAN mRNA 37804 37842 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 37804 37842 78 + . . scaffold1832 GLEAN mRNA 38748 39411 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 38748 39411 333 + . . scaffold1832 GLEAN mRNA 40877 40973 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 40877 40973 63 + . . scaffold1832 GLEAN mRNA 40877 40973 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 40877 40973 90 + . . scaffold1832 GLEAN mRNA 44404 44641 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 44404 44641 221 + . . scaffold1832 GLEAN mRNA 49596 49636 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 49596 49636 55 + . . scaffold1832 GLEAN mRNA 61161 61949 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 61161 61949 965 + . . scaffold1832 GLEAN mRNA 62102 62132 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 62102 62132 53 + . . scaffold1832 GLEAN mRNA 62908 62975 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 62908 62975 70 + . . scaffold1832 GLEAN mRNA 62908 62975 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 62908 62975 63 + . . scaffold1832 GLEAN mRNA 65890 66912 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 65890 66912 791 + . . scaffold1832 GLEAN mRNA 73259 73327 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 73259 73327 84 + . . scaffold1832 GLEAN mRNA 73256 73325 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 73256 73325 131 + . . scaffold1832 GLEAN mRNA 75133 75172 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 75133 75172 80 + . . scaffold1832 GLEAN mRNA 158678 158839 0.931923 + . ID=CGI_10018467; scaffold1832 WUBlastX DNA_Sola 158678 158839 58 - . . scaffold1832 GLEAN mRNA 198351 198536 0.999463 - . ID=CGI_10018468; scaffold1832 WUBlastX DNA_En-Spm 198195 198536 46 - . . scaffold1832 GLEAN mRNA 198577 198837 0.999463 - . ID=CGI_10018468; scaffold1832 WUBlastX DNA_En-Spm 198577 198837 53 - . . scaffold1832 GLEAN mRNA 209116 209256 0.999949 - . ID=CGI_10018469; scaffold1832 WUBlastX DNA_Maverick 209116 209256 79 - . . scaffold1832 GLEAN mRNA 209116 209334 0.999949 - . ID=CGI_10018469; scaffold1832 WUBlastX DNA_Maverick 209116 209334 66 - . . scaffold1832 GLEAN mRNA 209107 209364 0.999949 - . ID=CGI_10018469; scaffold1832 WUBlastX DNA_Maverick 209107 209364 54 - . . scaffold1832 GLEAN mRNA 269641 270344 0.670728 - . ID=CGI_10018473; scaffold1832 TRF Tandem_Repeat 269641 270344 897 + . . scaffold1832 GLEAN mRNA 274869 274913 0.670728 - . ID=CGI_10018473; scaffold1832 TRF Tandem_Repeat 274869 274913 72 + . . scaffold1832 GLEAN mRNA 277449 277498 0.670728 - . ID=CGI_10018473; scaffold1832 TRF Tandem_Repeat 277449 277498 100 + . . scaffold1832 GLEAN mRNA 278757 278802 0.670728 - . ID=CGI_10018473; scaffold1832 TRF Tandem_Repeat 278757 278802 56 + . . scaffold1832 GLEAN mRNA 298246 298270 0.423088 + . ID=CGI_10018474; scaffold1832 TRF Tandem_Repeat 298246 298270 50 + . . scaffold1832 GLEAN mRNA 330457 330491 0.923451 + . ID=CGI_10018478; scaffold1832 TRF Tandem_Repeat 330457 330491 70 + . . scaffold1832 GLEAN mRNA 333352 333409 0.923451 + . ID=CGI_10018478; scaffold1832 TRF Tandem_Repeat 333352 333409 80 + . . scaffold1832 GLEAN mRNA 329912 330151 0.923451 + . ID=CGI_10018478; scaffold1832 WUBlastX LINE_L2 329912 330151 48 + . . scaffold1832 GLEAN mRNA 450554 451215 0.843871 + . ID=CGI_10018484; scaffold1832 TRF Tandem_Repeat 450554 451215 788 + . . scaffold1832 GLEAN mRNA 450554 451215 0.843871 + . ID=CGI_10018484; scaffold1832 TRF Tandem_Repeat 450554 451215 932 + . . scaffold1832 GLEAN mRNA 467493 467518 0.955763 + . ID=CGI_10018486; scaffold1832 TRF Tandem_Repeat 467493 467518 52 + . . scaffold1832 GLEAN mRNA 477421 477648 0.999998 - . ID=CGI_10018487; scaffold1832 TRF Tandem_Repeat 477421 477648 343 + . . scaffold1832 GLEAN mRNA 483392 483435 1 + . ID=CGI_10018488; scaffold1832 TRF Tandem_Repeat 483392 483435 88 + . . scaffold1832 GLEAN mRNA 483451 483583 1 + . ID=CGI_10018488; scaffold1832 TRF Tandem_Repeat 483451 483583 162 + . . scaffold1832 GLEAN mRNA 484320 484372 1 + . ID=CGI_10018488; scaffold1832 TRF Tandem_Repeat 484320 484372 106 + . . scaffold1832 GLEAN mRNA 507586 507641 1 - . ID=CGI_10018491; scaffold1832 TRF Tandem_Repeat 507586 507641 112 + . . scaffold1832 GLEAN mRNA 509283 509372 1 - . ID=CGI_10018491; scaffold1832 TRF Tandem_Repeat 509283 509372 162 + . . scaffold472 GLEAN mRNA 91507 91799 0.777566 - . ID=CGI_10018499; scaffold472 TRF Tandem_Repeat 91507 91799 188 + . . scaffold472 GLEAN mRNA 91509 91776 0.777566 - . ID=CGI_10018499; scaffold472 TRF Tandem_Repeat 91509 91776 256 + . . scaffold472 GLEAN mRNA 96836 96863 0.777566 - . ID=CGI_10018499; scaffold472 TRF Tandem_Repeat 96836 96863 56 + . . scaffold472 GLEAN mRNA 103421 103482 1 - . ID=CGI_10018500; scaffold472 TRF Tandem_Repeat 103421 103482 124 + . . scaffold472 GLEAN mRNA 103615 103646 1 - . ID=CGI_10018500; scaffold472 TRF Tandem_Repeat 103615 103646 55 + . . scaffold472 GLEAN mRNA 143748 143793 0.995583 - . ID=CGI_10018507; scaffold472 TRF Tandem_Repeat 143748 143793 92 + . . scaffold472 GLEAN mRNA 145568 145607 0.995583 - . ID=CGI_10018507; scaffold472 TRF Tandem_Repeat 145568 145607 80 + . . scaffold472 GLEAN mRNA 171530 171563 0.430756 + . ID=CGI_10018508; scaffold472 TRF Tandem_Repeat 171530 171563 59 + . . scaffold472 GLEAN mRNA 177326 177390 0.430756 + . ID=CGI_10018508; scaffold472 TRF Tandem_Repeat 177326 177390 130 + . . scaffold472 GLEAN mRNA 190796 190842 0.430756 + . ID=CGI_10018508; scaffold472 TRF Tandem_Repeat 190796 190842 85 + . . scaffold472 GLEAN mRNA 212006 212391 1 + . ID=CGI_10018510; scaffold472 TRF Tandem_Repeat 212006 212391 523 + . . scaffold472 GLEAN mRNA 230505 230543 0.832915 + . ID=CGI_10018511; scaffold472 TRF Tandem_Repeat 230505 230543 69 + . . scaffold472 GLEAN mRNA 235356 235432 0.832915 + . ID=CGI_10018511; scaffold472 TRF Tandem_Repeat 235356 235432 154 + . . scaffold472 GLEAN mRNA 336997 337057 0.999594 + . ID=CGI_10018516; scaffold472 TRF Tandem_Repeat 336997 337057 122 + . . scaffold472 GLEAN mRNA 380009 380510 0.382571 + . ID=CGI_10018518; scaffold472 TRF Tandem_Repeat 380009 380510 461 + . . scaffold472 GLEAN mRNA 380102 380523 0.382571 + . ID=CGI_10018518; scaffold472 TRF Tandem_Repeat 380102 380523 553 + . . scaffold472 GLEAN mRNA 380102 380510 0.382571 + . ID=CGI_10018518; scaffold472 TRF Tandem_Repeat 380102 380510 517 + . . scaffold472 GLEAN mRNA 382211 382326 0.382571 + . ID=CGI_10018518; scaffold472 TRF Tandem_Repeat 382211 382326 196 + . . scaffold472 GLEAN mRNA 390886 391272 1 - . ID=CGI_10018519; scaffold472 TRF Tandem_Repeat 390886 391272 238 + . . scaffold472 GLEAN mRNA 390954 391163 1 - . ID=CGI_10018519; scaffold472 TRF Tandem_Repeat 390954 391163 114 + . . scaffold472 GLEAN mRNA 390952 391272 1 - . ID=CGI_10018519; scaffold472 TRF Tandem_Repeat 390952 391272 363 + . . scaffold472 GLEAN mRNA 395504 395958 1 - . ID=CGI_10018519; scaffold472 TRF Tandem_Repeat 395504 395958 529 + . . scaffold472 GLEAN mRNA 395529 395958 1 - . ID=CGI_10018519; scaffold472 TRF Tandem_Repeat 395529 395958 430 + . . scaffold472 GLEAN mRNA 404550 404604 1 - . ID=CGI_10018519; scaffold472 TRF Tandem_Repeat 404550 404604 65 + . . scaffold472 GLEAN mRNA 510171 510214 0.989841 + . ID=CGI_10018523; scaffold472 TRF Tandem_Repeat 510171 510214 88 + . . scaffold290 GLEAN mRNA 25297 25344 0.99304 + . ID=CGI_10018526; scaffold290 TRF Tandem_Repeat 25297 25344 96 + . . scaffold290 GLEAN mRNA 31996 32154 0.999011 - . ID=CGI_10018528; scaffold290 TRF Tandem_Repeat 31996 32154 131 + . . scaffold290 GLEAN mRNA 32372 32512 0.999011 - . ID=CGI_10018528; scaffold290 TRF Tandem_Repeat 32372 32512 129 + . . scaffold290 GLEAN mRNA 32590 32716 0.999011 - . ID=CGI_10018528; scaffold290 TRF Tandem_Repeat 32590 32716 137 + . . scaffold290 GLEAN mRNA 64602 64767 0.815504 + . ID=CGI_10018531; scaffold290 TRF Tandem_Repeat 64602 64767 131 + . . scaffold290 GLEAN mRNA 58007 58351 0.815504 + . ID=CGI_10018531; scaffold290 WUBlastX LINE_RTE-X 58007 58351 70 + . . scaffold290 GLEAN mRNA 60034 60429 0.815504 + . ID=CGI_10018531; scaffold290 WUBlastX LINE_RTE-BovB 60034 60429 109 - . . scaffold290 GLEAN mRNA 60097 60453 0.815504 + . ID=CGI_10018531; scaffold290 WUBlastX LINE_RTE-BovB 60097 60453 256 - . . scaffold290 GLEAN mRNA 57842 58201 0.815504 + . ID=CGI_10018531; scaffold290 WUBlastX LINE_RTE-X 57842 58201 24 + . . scaffold290 GLEAN mRNA 57974 58186 0.815504 + . ID=CGI_10018531; scaffold290 WUBlastX LINE_RTE-X 57974 58186 52 + . . scaffold290 GLEAN mRNA 84299 84592 0.613006 - . ID=CGI_10018533; scaffold290 WUBlastX LINE_L2 84299 84592 121 - . . scaffold290 GLEAN mRNA 84299 84700 0.613006 - . ID=CGI_10018533; scaffold290 WUBlastX LINE_CR1-L2 84299 84700 23 - . . scaffold290 GLEAN mRNA 103791 103823 0.999874 + . ID=CGI_10018534; scaffold290 TRF Tandem_Repeat 103791 103823 66 + . . scaffold290 GLEAN mRNA 163354 163400 0.803524 + . ID=CGI_10018537; scaffold290 TRF Tandem_Repeat 163354 163400 85 + . . scaffold290 GLEAN mRNA 164616 164669 0.803524 + . ID=CGI_10018537; scaffold290 TRF Tandem_Repeat 164616 164669 108 + . . scaffold290 GLEAN mRNA 166327 166369 0.803524 + . ID=CGI_10018537; scaffold290 TRF Tandem_Repeat 166327 166369 86 + . . scaffold290 GLEAN mRNA 185117 185272 0.688957 - . ID=CGI_10018539; scaffold290 WUBlastX LINE_RTE-X 185117 185272 63 + . . scaffold290 GLEAN mRNA 188272 188622 0.688957 - . ID=CGI_10018539; scaffold290 WUBlastX LINE_RTE-X 188272 188622 25 + . . scaffold290 GLEAN mRNA 185313 185663 0.688957 - . ID=CGI_10018539; scaffold290 WUBlastX LINE_RTE-X 185313 185663 28 + . . scaffold290 GLEAN mRNA 187506 188252 0.688957 - . ID=CGI_10018539; scaffold290 WUBlastX LINE_RTE-X 187506 188252 61 + . . scaffold290 GLEAN mRNA 187617 188204 0.688957 - . ID=CGI_10018539; scaffold290 WUBlastX LINE_RTE-X 187617 188204 76 + . . scaffold290 GLEAN mRNA 188569 188658 0.688957 - . ID=CGI_10018539; scaffold290 WUBlastX LINE_RTE-X 188569 188658 24 + . . scaffold290 GLEAN mRNA 185610 185699 0.688957 - . ID=CGI_10018539; scaffold290 WUBlastX LINE_RTE-X 185610 185699 24 + . . scaffold290 GLEAN mRNA 184739 185245 0.688957 - . ID=CGI_10018539; scaffold290 WUBlastX LINE_RTE-X 184739 185245 88 + . . scaffold290 GLEAN mRNA 188076 188231 0.688957 - . ID=CGI_10018539; scaffold290 WUBlastX LINE_RTE-X 188076 188231 63 + . . scaffold290 GLEAN mRNA 184643 185269 0.688957 - . ID=CGI_10018539; scaffold290 WUBlastX LINE_RTE-X 184643 185269 44 + . . scaffold290 GLEAN mRNA 280746 280844 0.722571 + . ID=CGI_10018541; scaffold290 TRF Tandem_Repeat 280746 280844 153 + . . scaffold290 GLEAN mRNA 285275 285312 0.722571 + . ID=CGI_10018541; scaffold290 TRF Tandem_Repeat 285275 285312 58 + . . scaffold290 GLEAN mRNA 303141 303168 0.750452 - . ID=CGI_10018542; scaffold290 TRF Tandem_Repeat 303141 303168 56 + . . scaffold290 GLEAN mRNA 303166 303205 0.750452 - . ID=CGI_10018542; scaffold290 TRF Tandem_Repeat 303166 303205 80 + . . scaffold290 GLEAN mRNA 303204 303237 0.750452 - . ID=CGI_10018542; scaffold290 TRF Tandem_Repeat 303204 303237 68 + . . scaffold290 GLEAN mRNA 307117 307179 0.750452 - . ID=CGI_10018542; scaffold290 TRF Tandem_Repeat 307117 307179 108 + . . scaffold290 GLEAN mRNA 307214 307247 0.750452 - . ID=CGI_10018542; scaffold290 TRF Tandem_Repeat 307214 307247 68 + . . scaffold290 GLEAN mRNA 394133 394177 0.99629 + . ID=CGI_10018549; scaffold290 TRF Tandem_Repeat 394133 394177 90 + . . scaffold290 GLEAN mRNA 397481 397557 0.99629 + . ID=CGI_10018549; scaffold290 TRF Tandem_Repeat 397481 397557 127 + . . scaffold290 GLEAN mRNA 395086 395361 0.99629 + . ID=CGI_10018549; scaffold290 WUBlastX LINE_RTE-X 395086 395361 74 + . . scaffold290 GLEAN mRNA 394912 395367 0.99629 + . ID=CGI_10018549; scaffold290 WUBlastX LINE_RTE-X 394912 395367 45 + . . scaffold290 GLEAN mRNA 412132 412185 0.99629 + . ID=CGI_10018549; scaffold290 TRF Tandem_Repeat 412132 412185 101 + . . scaffold290 GLEAN mRNA 534221 534448 0.981153 + . ID=CGI_10018554; scaffold290 WUBlastX DNA_hAT 534101 534448 75 + . . scaffold290 GLEAN mRNA 553307 553360 0.999676 + . ID=CGI_10018556; scaffold290 TRF Tandem_Repeat 553307 553360 108 + . . scaffold290 GLEAN mRNA 552412 552690 0.999676 + . ID=CGI_10018556; scaffold290 WUBlastX LTR_Gypsy 552412 552690 238 + . . scaffold290 GLEAN mRNA 552735 552935 0.999676 + . ID=CGI_10018556; scaffold290 WUBlastX LTR_Gypsy 552735 552935 92 + . . scaffold290 GLEAN mRNA 552319 552690 0.999676 + . ID=CGI_10018556; scaffold290 WUBlastX LTR_Gypsy 552319 552690 127 + . . scaffold290 GLEAN mRNA 552412 552849 0.999676 + . ID=CGI_10018556; scaffold290 WUBlastX LTR_Gypsy 552412 552849 95 + . . scaffold290 GLEAN mRNA 552732 552980 0.999676 + . ID=CGI_10018556; scaffold290 WUBlastX LTR_Gypsy 552732 552980 78 + . . scaffold290 GLEAN mRNA 552705 553031 0.999676 + . ID=CGI_10018556; scaffold290 WUBlastX LTR_Gypsy 552705 553031 23 + . . scaffold412 GLEAN mRNA 18165 18274 0.387784 - . ID=CGI_10018557; scaffold412 TRF Tandem_Repeat 18165 18274 123 + . . scaffold412 GLEAN mRNA 20153 20188 0.387784 - . ID=CGI_10018557; scaffold412 TRF Tandem_Repeat 20153 20188 72 + . . scaffold412 GLEAN mRNA 20477 20624 0.387784 - . ID=CGI_10018557; scaffold412 TRF Tandem_Repeat 20477 20624 181 + . . scaffold412 GLEAN mRNA 21116 21223 0.387784 - . ID=CGI_10018557; scaffold412 TRF Tandem_Repeat 21116 21223 130 + . . scaffold412 GLEAN mRNA 21114 21232 0.387784 - . ID=CGI_10018557; scaffold412 TRF Tandem_Repeat 21114 21232 105 + . . scaffold412 GLEAN mRNA 67769 67806 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 67769 67806 58 + . . scaffold412 GLEAN mRNA 67769 67818 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 67769 67818 73 + . . scaffold412 GLEAN mRNA 79069 79127 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 79069 79127 55 + . . scaffold412 GLEAN mRNA 79077 79140 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 79077 79140 74 + . . scaffold412 GLEAN mRNA 73060 73275 0.261275 - . ID=CGI_10018559; scaffold412 WUBlastX LTR_Ngaro 73060 73275 67 + . . scaffold412 GLEAN mRNA 73280 73465 0.261275 - . ID=CGI_10018559; scaffold412 WUBlastX LTR_Ngaro 73280 73465 92 + . . scaffold412 GLEAN mRNA 73099 73275 0.261275 - . ID=CGI_10018559; scaffold412 WUBlastX LTR_Ngaro 73099 73275 73 + . . scaffold412 GLEAN mRNA 102828 102870 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 102828 102870 86 + . . scaffold412 GLEAN mRNA 104998 106175 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 104998 106175 1234 + . . scaffold412 GLEAN mRNA 108491 108548 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 108491 108548 98 + . . scaffold412 GLEAN mRNA 113168 113266 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 113168 113266 74 + . . scaffold412 GLEAN mRNA 114926 114984 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 114926 114984 100 + . . scaffold412 GLEAN mRNA 117488 118248 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 117488 118248 611 + . . scaffold412 GLEAN mRNA 127544 127597 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 127544 127597 108 + . . scaffold412 GLEAN mRNA 127727 127822 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 127727 127822 70 + . . scaffold412 GLEAN mRNA 128156 128198 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 128156 128198 86 + . . scaffold412 GLEAN mRNA 128252 128303 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 128252 128303 79 + . . scaffold412 GLEAN mRNA 128369 128420 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 128369 128420 50 + . . scaffold412 GLEAN mRNA 128524 128562 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 128524 128562 60 + . . scaffold412 GLEAN mRNA 125024 125329 0.261275 - . ID=CGI_10018559; scaffold412 WUBlastX LTR_Ngaro 125024 125329 81 + . . scaffold412 GLEAN mRNA 124922 125329 0.261275 - . ID=CGI_10018559; scaffold412 WUBlastX LTR_Ngaro 124922 125329 45 + . . scaffold412 GLEAN mRNA 132486 132527 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 132486 132527 84 + . . scaffold412 GLEAN mRNA 132897 132934 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 132897 132934 67 + . . scaffold412 GLEAN mRNA 143736 144794 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1 143736 144794 423 + . . scaffold412 GLEAN mRNA 144786 145418 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1-Tx1 144786 145418 191 + . . scaffold412 GLEAN mRNA 145355 147283 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1-Tx1 145355 147283 650 + . . scaffold412 GLEAN mRNA 146273 147334 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1-Tx1 146273 147334 661 + . . scaffold412 GLEAN mRNA 156425 156475 0.499998 - . ID=CGI_10018560; scaffold412 TRF Tandem_Repeat 156425 156475 79 + . . scaffold412 GLEAN mRNA 148096 148245 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1 148096 148245 44 + . . scaffold412 GLEAN mRNA 148033 148224 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1 148033 148224 43 + . . scaffold412 GLEAN mRNA 148042 148443 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1-Tx1 148042 148443 29 + . . scaffold412 GLEAN mRNA 147693 148022 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1-Tx1 147693 148022 72 + . . scaffold412 GLEAN mRNA 147285 147680 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1-Tx1 147285 147680 120 + . . scaffold412 GLEAN mRNA 147285 147956 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1-Tx1 147285 147956 74 + . . scaffold412 GLEAN mRNA 208032 208096 0.999939 - . ID=CGI_10018563; scaffold412 TRF Tandem_Repeat 208032 208096 121 + . . scaffold412 GLEAN mRNA 239316 239359 1 - . ID=CGI_10018566; scaffold412 TRF Tandem_Repeat 239316 239359 52 + . . scaffold412 GLEAN mRNA 249041 249081 1 + . ID=CGI_10018568; scaffold412 TRF Tandem_Repeat 249041 249081 82 + . . scaffold412 GLEAN mRNA 270643 270683 0.997818 + . ID=CGI_10018571; scaffold412 TRF Tandem_Repeat 270643 270683 57 + . . scaffold412 GLEAN mRNA 273296 273335 0.997818 + . ID=CGI_10018571; scaffold412 TRF Tandem_Repeat 273296 273335 80 + . . scaffold412 GLEAN mRNA 339626 339669 0.999351 + . ID=CGI_10018574; scaffold412 TRF Tandem_Repeat 339626 339669 79 + . . scaffold412 GLEAN mRNA 380663 380782 0.999998 + . ID=CGI_10018577; scaffold412 WUBlastX LINE_CR1-L2 380657 380782 23 + . . scaffold412 GLEAN mRNA 380809 380856 0.999998 + . ID=CGI_10018577; scaffold412 WUBlastX LINE_Jockey 380809 380856 27 + . . scaffold412 GLEAN mRNA 477191 477412 0.999922 - . ID=CGI_10018583; scaffold412 WUBlastX LTR_Gypsy 477191 477412 54 - . . scaffold412 GLEAN mRNA 541350 541395 0.996011 + . ID=CGI_10018587; scaffold412 TRF Tandem_Repeat 541350 541395 92 + . . scaffold412 GLEAN mRNA 541507 541533 0.996011 + . ID=CGI_10018587; scaffold412 TRF Tandem_Repeat 541507 541533 54 + . . scaffold412 GLEAN mRNA 548748 548793 0.996011 + . ID=CGI_10018587; scaffold412 TRF Tandem_Repeat 548748 548793 92 + . . scaffold412 GLEAN mRNA 541350 541395 1 - . ID=CGI_10018588; scaffold412 TRF Tandem_Repeat 541350 541395 92 + . . scaffold412 GLEAN mRNA 541507 541533 1 - . ID=CGI_10018588; scaffold412 TRF Tandem_Repeat 541507 541533 54 + . . scaffold247 GLEAN mRNA 59457 59505 0.347971 + . ID=CGI_10018589; scaffold247 TRF Tandem_Repeat 59457 59505 98 + . . scaffold247 GLEAN mRNA 92375 92409 0.666522 - . ID=CGI_10018591; scaffold247 TRF Tandem_Repeat 92375 92409 70 + . . scaffold247 GLEAN mRNA 92790 92828 0.666522 - . ID=CGI_10018591; scaffold247 TRF Tandem_Repeat 92790 92828 71 + . . scaffold247 GLEAN mRNA 93981 94014 0.666522 - . ID=CGI_10018591; scaffold247 TRF Tandem_Repeat 93981 94014 68 + . . scaffold247 GLEAN mRNA 94644 94720 0.666522 - . ID=CGI_10018591; scaffold247 TRF Tandem_Repeat 94644 94720 147 + . . scaffold247 GLEAN mRNA 204630 204800 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 204630 204800 37 - . . scaffold247 GLEAN mRNA 202505 202693 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 202505 202693 36 - . . scaffold247 GLEAN mRNA 202657 202938 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 202657 202938 107 - . . scaffold247 GLEAN mRNA 204681 204884 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 204681 204884 22 - . . scaffold247 GLEAN mRNA 203993 204367 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 203993 204367 57 - . . scaffold247 GLEAN mRNA 203560 203664 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 203560 203664 32 - . . scaffold247 GLEAN mRNA 202935 203150 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 202935 203150 24 - . . scaffold247 GLEAN mRNA 204110 204385 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 204110 204385 69 - . . scaffold247 GLEAN mRNA 203682 203972 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 203682 203972 96 - . . scaffold247 GLEAN mRNA 204567 204740 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 204567 204740 26 - . . scaffold247 GLEAN mRNA 202585 202938 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 202585 202938 46 - . . scaffold247 GLEAN mRNA 203560 203631 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 203560 203631 32 - . . scaffold247 GLEAN mRNA 330585 331448 0.675637 - . ID=CGI_10018594; scaffold247 WUBlastX LINE_L1-Tx1 330585 331448 191 - . . scaffold247 GLEAN mRNA 330438 331217 0.675637 - . ID=CGI_10018594; scaffold247 WUBlastX LINE_L1-Tx1 330438 331217 262 - . . scaffold247 GLEAN mRNA 331255 331491 0.675637 - . ID=CGI_10018594; scaffold247 WUBlastX LINE_RTE-BovB 331255 331491 37 - . . scaffold247 GLEAN mRNA 329473 330546 0.675637 - . ID=CGI_10018594; scaffold247 WUBlastX LINE_L1-Tx1 329473 330546 65 - . . scaffold247 GLEAN mRNA 327910 328143 0.675637 - . ID=CGI_10018594; scaffold247 WUBlastX LTR_DIRS 327910 328143 100 + . . scaffold247 GLEAN mRNA 327904 328095 0.675637 - . ID=CGI_10018594; scaffold247 WUBlastX LTR_DIRS 327904 328095 119 + . . scaffold247 GLEAN mRNA 326796 327707 0.675637 - . ID=CGI_10018594; scaffold247 WUBlastX LTR_DIRS 326796 327707 267 + . . scaffold247 GLEAN mRNA 454140 454177 0.663525 + . ID=CGI_10018599; scaffold247 TRF Tandem_Repeat 454140 454177 67 + . . scaffold163 GLEAN mRNA 18912 19206 0.999626 + . ID=CGI_10018605; scaffold163 TRF Tandem_Repeat 18912 19206 455 + . . scaffold163 GLEAN mRNA 23219 23280 0.999626 + . ID=CGI_10018605; scaffold163 TRF Tandem_Repeat 23219 23280 81 + . . scaffold163 GLEAN mRNA 24725 26204 0.999626 + . ID=CGI_10018605; scaffold163 TRF Tandem_Repeat 24725 26204 1824 + . . scaffold163 GLEAN mRNA 53507 53541 1 + . ID=CGI_10018608; scaffold163 TRF Tandem_Repeat 53507 53541 70 + . . scaffold163 GLEAN mRNA 99550 99580 0.975626 - . ID=CGI_10018609; scaffold163 TRF Tandem_Repeat 99550 99580 53 + . . scaffold163 GLEAN mRNA 102288 102379 0.975626 - . ID=CGI_10018609; scaffold163 TRF Tandem_Repeat 102288 102379 114 + . . scaffold163 GLEAN mRNA 108762 109557 0.895517 + . ID=CGI_10018610; scaffold163 TRF Tandem_Repeat 108762 109557 1220 + . . scaffold163 GLEAN mRNA 109614 110210 0.895517 + . ID=CGI_10018610; scaffold163 WUBlastX LTR_Ngaro 109614 110210 131 + . . scaffold163 GLEAN mRNA 110208 111548 0.895517 + . ID=CGI_10018610; scaffold163 WUBlastX LTR_Ngaro 110208 111548 824 + . . scaffold163 GLEAN mRNA 122905 122948 0.606466 + . ID=CGI_10018612; scaffold163 TRF Tandem_Repeat 122905 122948 79 + . . scaffold163 GLEAN mRNA 122948 122978 0.606466 + . ID=CGI_10018612; scaffold163 TRF Tandem_Repeat 122948 122978 53 + . . scaffold163 GLEAN mRNA 127717 127754 0.606466 + . ID=CGI_10018612; scaffold163 TRF Tandem_Repeat 127717 127754 76 + . . scaffold163 GLEAN mRNA 117082 117549 0.606466 + . ID=CGI_10018612; scaffold163 WUBlastX LINE_Penelope 117082 117549 118 - . . scaffold163 GLEAN mRNA 113612 116365 0.606466 + . ID=CGI_10018612; scaffold163 WUBlastX LINE_L1-Tx1 113612 116365 1689 + . . scaffold163 GLEAN mRNA 154502 154534 0.469368 - . ID=CGI_10018613; scaffold163 TRF Tandem_Repeat 154502 154534 57 + . . scaffold163 GLEAN mRNA 174662 174764 0.535062 - . ID=CGI_10018615; scaffold163 TRF Tandem_Repeat 174662 174764 102 + . . scaffold163 GLEAN mRNA 179663 179723 0.535062 - . ID=CGI_10018615; scaffold163 TRF Tandem_Repeat 179663 179723 122 + . . scaffold163 GLEAN mRNA 179856 179885 0.535062 - . ID=CGI_10018615; scaffold163 TRF Tandem_Repeat 179856 179885 51 + . . scaffold163 GLEAN mRNA 174662 174764 0.780072 + . ID=CGI_10018616; scaffold163 TRF Tandem_Repeat 174662 174764 102 + . . scaffold163 GLEAN mRNA 337746 337946 0.915172 + . ID=CGI_10018622; scaffold163 TRF Tandem_Repeat 337746 337946 197 + . . scaffold163 GLEAN mRNA 337746 337946 0.915172 + . ID=CGI_10018622; scaffold163 TRF Tandem_Repeat 337746 337946 204 + . . scaffold163 GLEAN mRNA 347841 347898 0.915172 + . ID=CGI_10018622; scaffold163 TRF Tandem_Repeat 347841 347898 91 + . . scaffold163 GLEAN mRNA 347842 347895 0.915172 + . ID=CGI_10018622; scaffold163 TRF Tandem_Repeat 347842 347895 56 + . . scaffold163 GLEAN mRNA 349277 350122 0.915172 + . ID=CGI_10018622; scaffold163 TRF Tandem_Repeat 349277 350122 1160 + . . scaffold163 GLEAN mRNA 363981 364006 0.916029 + . ID=CGI_10018623; scaffold163 TRF Tandem_Repeat 363981 364006 52 + . . scaffold163 GLEAN mRNA 442105 442134 0.311673 + . ID=CGI_10018629; scaffold163 TRF Tandem_Repeat 442105 442134 51 + . . scaffold163 GLEAN mRNA 449961 450556 0.311673 + . ID=CGI_10018629; scaffold163 TRF Tandem_Repeat 449961 450556 834 + . . scaffold163 GLEAN mRNA 471348 472043 0.311673 + . ID=CGI_10018629; scaffold163 TRF Tandem_Repeat 471348 472043 1148 + . . scaffold163 GLEAN mRNA 479587 479642 0.311673 + . ID=CGI_10018629; scaffold163 TRF Tandem_Repeat 479587 479642 62 + . . scaffold163 GLEAN mRNA 479584 479638 0.311673 + . ID=CGI_10018629; scaffold163 TRF Tandem_Repeat 479584 479638 56 + . . scaffold163 GLEAN mRNA 477239 477280 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy 477239 477280 30 + . . scaffold163 GLEAN mRNA 479811 480281 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy 479811 480281 351 + . . scaffold163 GLEAN mRNA 482018 482692 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy 482018 482692 402 + . . scaffold163 GLEAN mRNA 480283 482130 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy-Cigr 480283 482130 822 + . . scaffold163 GLEAN mRNA 476425 476997 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy 476425 476997 38 + . . scaffold163 GLEAN mRNA 477731 477931 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy 477731 477931 41 + . . scaffold163 GLEAN mRNA 476434 476898 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy 476434 476898 167 + . . scaffold163 GLEAN mRNA 479679 480314 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy 479679 480314 300 + . . scaffold163 GLEAN mRNA 476053 476913 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy 476053 476913 38 + . . scaffold163 GLEAN mRNA 476329 476877 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy 476329 476877 59 + . . scaffold163 GLEAN mRNA 477755 478108 0.311673 + . ID=CGI_10018629; scaffold163 WUBlastX LTR_Gypsy 477755 478108 36 + . . scaffold163 GLEAN mRNA 487295 488326 0.810494 + . ID=CGI_10018630; scaffold163 WUBlastX LTR_Gypsy-Troyk 487295 488326 943 + . . scaffold163 GLEAN mRNA 488264 490780 0.810494 + . ID=CGI_10018630; scaffold163 WUBlastX LTR_Gypsy-Troyk 488264 490780 2601 + . . scaffold163 GLEAN mRNA 490887 491471 0.810494 + . ID=CGI_10018630; scaffold163 WUBlastX LTR_Gypsy-Troyk 490887 491471 473 + . . scaffold163 GLEAN mRNA 490792 490881 0.810494 + . ID=CGI_10018630; scaffold163 WUBlastX LTR_Gypsy 490792 490881 69 + . . scaffold163 GLEAN mRNA 487856 489790 0.810494 + . ID=CGI_10018630; scaffold163 WUBlastX LTR_Gypsy 487856 489790 1027 + . . scaffold163 GLEAN mRNA 491456 491980 0.810494 + . ID=CGI_10018630; scaffold163 WUBlastX LTR_Gypsy-Troyk 491456 491980 168 + . . scaffold163 GLEAN mRNA 502753 502866 1 - . ID=CGI_10018631; scaffold163 WUBlastX DNA_Harbinger 502753 502866 116 - . . scaffold163 GLEAN mRNA 491676 491980 1 - . ID=CGI_10018631; scaffold163 WUBlastX LTR_Gypsy-Troyk 491456 491980 168 + . . scaffold163 GLEAN mRNA 502753 502866 0.858032 + . ID=CGI_10018632; scaffold163 WUBlastX DNA_Harbinger 502753 502866 116 - . . scaffold163 GLEAN mRNA 512694 512740 0.999581 - . ID=CGI_10018633; scaffold163 TRF Tandem_Repeat 512694 512740 85 + . . scaffold163 GLEAN mRNA 516087 516132 0.999581 - . ID=CGI_10018633; scaffold163 TRF Tandem_Repeat 516087 516132 92 + . . scaffold163 GLEAN mRNA 558987 559059 0.374424 + . ID=CGI_10018634; scaffold163 TRF Tandem_Repeat 558987 559059 128 + . . scaffold509 GLEAN mRNA 17073 17654 0.999716 - . ID=CGI_10018635; scaffold509 WUBlastX DNA_TcMar-Tc1 17073 17654 355 + . . scaffold509 GLEAN mRNA 16959 17654 0.999716 - . ID=CGI_10018635; scaffold509 WUBlastX DNA_TcMar-Tc1 16959 17654 191 + . . scaffold509 GLEAN mRNA 62129 62287 0.764061 - . ID=CGI_10018638; scaffold509 TRF Tandem_Repeat 62129 62287 192 + . . scaffold509 GLEAN mRNA 64954 64998 0.764061 - . ID=CGI_10018638; scaffold509 TRF Tandem_Repeat 64954 64998 90 + . . scaffold509 GLEAN mRNA 61469 61666 0.764061 - . ID=CGI_10018638; scaffold509 WUBlastX LINE_Penelope 61469 61666 64 - . . scaffold509 GLEAN mRNA 97313 97403 0.858612 - . ID=CGI_10018642; scaffold509 TRF Tandem_Repeat 97313 97403 182 + . . scaffold509 GLEAN mRNA 93259 93717 0.858612 - . ID=CGI_10018642; scaffold509 WUBlastX LTR_Ngaro 93259 93717 166 + . . scaffold509 GLEAN mRNA 92550 93251 0.858612 - . ID=CGI_10018642; scaffold509 WUBlastX LTR_Ngaro 92550 93251 459 + . . scaffold509 GLEAN mRNA 93259 93630 0.858612 - . ID=CGI_10018642; scaffold509 WUBlastX LTR_Ngaro 93259 93630 215 + . . scaffold509 GLEAN mRNA 92550 93392 0.858612 - . ID=CGI_10018642; scaffold509 WUBlastX LTR_Ngaro 92550 93392 442 + . . scaffold509 GLEAN mRNA 93631 93744 0.858612 - . ID=CGI_10018642; scaffold509 WUBlastX LTR_Ngaro 93631 93744 44 + . . scaffold509 GLEAN mRNA 206650 206859 0.998586 - . ID=CGI_10018644; scaffold509 WUBlastX LINE_RTE-BovB 206650 206859 23 - . . scaffold509 GLEAN mRNA 206501 206650 0.998586 - . ID=CGI_10018644; scaffold509 WUBlastX LINE_RTE-BovB 206501 206650 44 - . . scaffold509 GLEAN mRNA 206474 206647 0.998586 - . ID=CGI_10018644; scaffold509 WUBlastX LINE_RTE-BovB 206474 206647 41 - . . scaffold509 GLEAN mRNA 206647 206808 0.998586 - . ID=CGI_10018644; scaffold509 WUBlastX LINE_RTE-BovB 206647 206808 54 - . . scaffold509 GLEAN mRNA 256872 257288 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 256872 257288 84 + . . scaffold509 GLEAN mRNA 258288 258599 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 258288 258599 78 + . . scaffold509 GLEAN mRNA 256058 256195 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1 256058 256195 80 + . . scaffold509 GLEAN mRNA 256249 256830 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 256249 256830 221 + . . scaffold509 GLEAN mRNA 257204 257611 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 257204 257611 310 + . . scaffold509 GLEAN mRNA 257599 258042 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 257599 258042 241 + . . scaffold509 GLEAN mRNA 257975 258349 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 257975 258349 127 + . . scaffold509 GLEAN mRNA 258622 259512 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 258622 259512 46 + . . scaffold509 GLEAN mRNA 258279 258542 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1 258279 258542 82 + . . scaffold509 GLEAN mRNA 256043 256222 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 256043 256222 59 + . . scaffold509 GLEAN mRNA 258276 258476 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1 258276 258476 93 + . . scaffold509 GLEAN mRNA 265776 265814 0.999344 + . ID=CGI_10018647; scaffold509 TRF Tandem_Repeat 265776 265814 78 + . . scaffold509 GLEAN mRNA 266052 266677 0.999344 + . ID=CGI_10018647; scaffold509 TRF Tandem_Repeat 266052 266677 225 + . . scaffold509 GLEAN mRNA 266206 266674 0.999344 + . ID=CGI_10018647; scaffold509 TRF Tandem_Repeat 266206 266674 512 + . . scaffold509 GLEAN mRNA 266677 266939 0.999344 + . ID=CGI_10018647; scaffold509 TRF Tandem_Repeat 266677 266939 214 + . . scaffold509 GLEAN mRNA 334214 334263 0.291364 - . ID=CGI_10018649; scaffold509 TRF Tandem_Repeat 334214 334263 100 + . . scaffold509 GLEAN mRNA 357602 357736 0.380739 + . ID=CGI_10018650; scaffold509 TRF Tandem_Repeat 357602 357736 227 + . . scaffold509 GLEAN mRNA 367932 367978 0.380739 + . ID=CGI_10018650; scaffold509 TRF Tandem_Repeat 367932 367978 94 + . . scaffold509 GLEAN mRNA 370943 371321 0.380739 + . ID=CGI_10018650; scaffold509 TRF Tandem_Repeat 370943 371321 415 + . . scaffold509 GLEAN mRNA 399487 399548 1 - . ID=CGI_10018651; scaffold509 TRF Tandem_Repeat 399487 399548 124 + . . scaffold509 GLEAN mRNA 405714 405796 0.998203 + . ID=CGI_10018652; scaffold509 TRF Tandem_Repeat 405714 405796 62 + . . scaffold509 GLEAN mRNA 405738 405844 0.998203 + . ID=CGI_10018652; scaffold509 TRF Tandem_Repeat 405738 405844 88 + . . scaffold509 GLEAN mRNA 422750 422781 1 + . ID=CGI_10018654; scaffold509 TRF Tandem_Repeat 422750 422781 50 + . . scaffold509 GLEAN mRNA 427862 427927 1 + . ID=CGI_10018654; scaffold509 TRF Tandem_Repeat 427862 427927 107 + . . scaffold509 GLEAN mRNA 430897 430954 1 + . ID=CGI_10018654; scaffold509 TRF Tandem_Repeat 430897 430954 59 + . . scaffold509 GLEAN mRNA 481626 481686 0.999675 - . ID=CGI_10018658; scaffold509 TRF Tandem_Repeat 481626 481686 113 + . . scaffold509 GLEAN mRNA 485573 485786 0.999675 - . ID=CGI_10018658; scaffold509 TRF Tandem_Repeat 485573 485786 142 + . . scaffold509 GLEAN mRNA 490266 490305 0.999675 - . ID=CGI_10018658; scaffold509 TRF Tandem_Repeat 490266 490305 53 + . . scaffold509 GLEAN mRNA 491986 492019 0.999675 - . ID=CGI_10018658; scaffold509 TRF Tandem_Repeat 491986 492019 59 + . . scaffold509 GLEAN mRNA 511110 511146 0.855565 - . ID=CGI_10018660; scaffold509 TRF Tandem_Repeat 511110 511146 74 + . . scaffold509 GLEAN mRNA 512154 512198 0.855565 - . ID=CGI_10018660; scaffold509 TRF Tandem_Repeat 512154 512198 90 + . . scaffold509 GLEAN mRNA 517060 517147 1 + . ID=CGI_10018661; scaffold509 TRF Tandem_Repeat 517060 517147 167 + . . scaffold509 GLEAN mRNA 517800 517824 1 + . ID=CGI_10018661; scaffold509 TRF Tandem_Repeat 517800 517824 50 + . . scaffold509 GLEAN mRNA 526708 526778 0.999676 - . ID=CGI_10018662; scaffold509 TRF Tandem_Repeat 526708 526778 74 + . . scaffold509 GLEAN mRNA 527992 528096 0.999676 - . ID=CGI_10018662; scaffold509 TRF Tandem_Repeat 527992 528096 94 + . . scaffold189 GLEAN mRNA 29585 29712 0.48054 + . ID=CGI_10018663; scaffold189 TRF Tandem_Repeat 29585 29712 103 + . . scaffold189 GLEAN mRNA 37439 37531 0.48054 + . ID=CGI_10018663; scaffold189 WUBlastX LTR_Ngaro 37439 37531 61 - . . scaffold189 GLEAN mRNA 37230 37436 0.48054 + . ID=CGI_10018663; scaffold189 WUBlastX LTR_Gypsy 37230 37436 85 - . . scaffold189 GLEAN mRNA 36819 37382 0.48054 + . ID=CGI_10018663; scaffold189 WUBlastX LTR_Gypsy 36819 37382 200 - . . scaffold189 GLEAN mRNA 35207 37165 0.48054 + . ID=CGI_10018663; scaffold189 WUBlastX LTR_Gypsy 35207 37165 1241 - . . scaffold189 GLEAN mRNA 74827 74875 1 - . ID=CGI_10018668; scaffold189 TRF Tandem_Repeat 74827 74875 98 + . . scaffold189 GLEAN mRNA 85166 85209 0.835223 - . ID=CGI_10018669; scaffold189 TRF Tandem_Repeat 85166 85209 61 + . . scaffold189 GLEAN mRNA 85332 85371 0.835223 - . ID=CGI_10018669; scaffold189 TRF Tandem_Repeat 85332 85371 80 + . . scaffold189 GLEAN mRNA 105440 105464 0.92996 + . ID=CGI_10018670; scaffold189 TRF Tandem_Repeat 105440 105464 50 + . . scaffold189 GLEAN mRNA 107717 107911 0.92996 + . ID=CGI_10018670; scaffold189 TRF Tandem_Repeat 107717 107911 306 + . . scaffold189 GLEAN mRNA 108473 108639 0.92996 + . ID=CGI_10018670; scaffold189 TRF Tandem_Repeat 108473 108639 141 + . . scaffold189 GLEAN mRNA 111809 112058 0.92996 + . ID=CGI_10018670; scaffold189 TRF Tandem_Repeat 111809 112058 358 + . . scaffold189 GLEAN mRNA 120503 120527 1 - . ID=CGI_10018671; scaffold189 TRF Tandem_Repeat 120503 120527 50 + . . scaffold189 GLEAN mRNA 122104 122146 1 - . ID=CGI_10018671; scaffold189 TRF Tandem_Repeat 122104 122146 86 + . . scaffold189 GLEAN mRNA 167022 167070 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 167022 167070 98 + . . scaffold189 GLEAN mRNA 167125 167155 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 167125 167155 53 + . . scaffold189 GLEAN mRNA 169769 169852 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 169769 169852 55 + . . scaffold189 GLEAN mRNA 171184 171857 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 171184 171857 1024 + . . scaffold189 GLEAN mRNA 173884 173916 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 173884 173916 66 + . . scaffold189 GLEAN mRNA 173914 173969 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 173914 173969 103 + . . scaffold189 GLEAN mRNA 177833 179002 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 177833 179002 1528 + . . scaffold189 GLEAN mRNA 179248 179780 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 179248 179780 484 + . . scaffold189 GLEAN mRNA 179283 179778 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 179283 179778 364 + . . scaffold189 GLEAN mRNA 180264 180289 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 180264 180289 52 + . . scaffold189 GLEAN mRNA 182303 182868 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 182303 182868 250 + . . scaffold189 GLEAN mRNA 185306 186491 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 185306 186491 1723 + . . scaffold189 GLEAN mRNA 188764 192702 0.999165 - . ID=CGI_10018675; scaffold189 WUBlastX LTR_Gypsy 188764 192702 3249 + . . scaffold189 GLEAN mRNA 192625 192759 0.999165 - . ID=CGI_10018675; scaffold189 WUBlastX LTR_Gypsy 192625 192759 35 + . . scaffold189 GLEAN mRNA 197680 197727 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 197680 197727 96 + . . scaffold189 GLEAN mRNA 206353 206394 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 206353 206394 50 + . . scaffold189 GLEAN mRNA 207119 207166 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 207119 207166 96 + . . scaffold189 GLEAN mRNA 209686 209836 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 209686 209836 74 + . . scaffold189 GLEAN mRNA 210148 210453 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 210148 210453 488 + . . scaffold189 GLEAN mRNA 203566 203964 0.999165 - . ID=CGI_10018675; scaffold189 WUBlastX LINE_L1-Tx1 203566 203964 27 - . . scaffold189 GLEAN mRNA 213585 214601 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 213585 214601 824 + . . scaffold189 GLEAN mRNA 216491 216649 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 216491 216649 70 + . . scaffold189 GLEAN mRNA 215815 216786 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 215815 216786 1155 + . . scaffold189 GLEAN mRNA 269197 269940 0.326204 - . ID=CGI_10018678; scaffold189 TRF Tandem_Repeat 269197 269940 1224 + . . scaffold189 GLEAN mRNA 278722 280208 0.326204 - . ID=CGI_10018678; scaffold189 TRF Tandem_Repeat 278722 280208 1843 + . . scaffold189 GLEAN mRNA 278651 280208 0.326204 - . ID=CGI_10018678; scaffold189 TRF Tandem_Repeat 278651 280208 1849 + . . scaffold189 GLEAN mRNA 427395 427446 0.996547 + . ID=CGI_10018683; scaffold189 TRF Tandem_Repeat 427395 427446 79 + . . scaffold189 GLEAN mRNA 442536 442595 0.996547 + . ID=CGI_10018683; scaffold189 TRF Tandem_Repeat 442536 442595 84 + . . scaffold189 GLEAN mRNA 464617 464680 0.879297 + . ID=CGI_10018684; scaffold189 TRF Tandem_Repeat 464617 464680 83 + . . scaffold189 GLEAN mRNA 476916 476979 0.879297 + . ID=CGI_10018684; scaffold189 TRF Tandem_Repeat 476916 476979 128 + . . scaffold189 GLEAN mRNA 478834 479262 0.879297 + . ID=CGI_10018684; scaffold189 TRF Tandem_Repeat 478834 479262 149 + . . scaffold189 GLEAN mRNA 478828 479245 0.879297 + . ID=CGI_10018684; scaffold189 TRF Tandem_Repeat 478828 479245 297 + . . scaffold189 GLEAN mRNA 485039 485780 0.879297 + . ID=CGI_10018684; scaffold189 TRF Tandem_Repeat 485039 485780 994 + . . scaffold189 GLEAN mRNA 497513 498604 0.989016 - . ID=CGI_10018685; scaffold189 TRF Tandem_Repeat 497513 498604 1832 + . . scaffold189 GLEAN mRNA 499768 499807 0.989016 - . ID=CGI_10018685; scaffold189 TRF Tandem_Repeat 499768 499807 80 + . . scaffold189 GLEAN mRNA 500507 500538 0.989016 - . ID=CGI_10018685; scaffold189 TRF Tandem_Repeat 500507 500538 64 + . . scaffold189 GLEAN mRNA 517069 517183 0.215488 + . ID=CGI_10018686; scaffold189 TRF Tandem_Repeat 517069 517183 212 + . . scaffold189 GLEAN mRNA 520594 520933 0.215488 + . ID=CGI_10018686; scaffold189 TRF Tandem_Repeat 520594 520933 515 + . . scaffold189 GLEAN mRNA 559160 559190 1 - . ID=CGI_10018688; scaffold189 TRF Tandem_Repeat 559160 559190 62 + . . scaffold368 GLEAN mRNA 19091 19122 0.999972 + . ID=CGI_10018689; scaffold368 TRF Tandem_Repeat 19091 19122 57 + . . scaffold368 GLEAN mRNA 31753 31803 0.754759 - . ID=CGI_10018691; scaffold368 TRF Tandem_Repeat 31753 31803 102 + . . scaffold368 GLEAN mRNA 31236 31544 0.754759 - . ID=CGI_10018691; scaffold368 WUBlastX DNA_Harbinger 31236 31544 48 + . . scaffold368 GLEAN mRNA 31365 31544 0.754759 - . ID=CGI_10018691; scaffold368 WUBlastX DNA_Harbinger 31365 31544 60 + . . scaffold368 GLEAN mRNA 40671 40826 0.754759 - . ID=CGI_10018691; scaffold368 WUBlastX DNA_Harbinger 40671 40826 61 - . . scaffold368 GLEAN mRNA 40072 40233 0.754759 - . ID=CGI_10018691; scaffold368 WUBlastX DNA_Harbinger 40072 40233 91 - . . scaffold368 GLEAN mRNA 64489 64536 0.988877 + . ID=CGI_10018694; scaffold368 TRF Tandem_Repeat 64489 64536 96 + . . scaffold368 GLEAN mRNA 71109 71198 1 + . ID=CGI_10018695; scaffold368 TRF Tandem_Repeat 71109 71198 166 + . . scaffold368 GLEAN mRNA 87474 87527 0.999415 - . ID=CGI_10018696; scaffold368 TRF Tandem_Repeat 87474 87527 108 + . . scaffold368 GLEAN mRNA 90390 90428 0.999415 - . ID=CGI_10018696; scaffold368 TRF Tandem_Repeat 90390 90428 60 + . . scaffold368 GLEAN mRNA 89505 90167 0.999415 - . ID=CGI_10018696; scaffold368 WUBlastX DNA_Kolobok-IS4 89505 90167 178 + . . scaffold368 GLEAN mRNA 88281 88631 0.999415 - . ID=CGI_10018696; scaffold368 WUBlastX DNA_IS4EU 88281 88631 59 + . . scaffold368 GLEAN mRNA 89082 90041 0.999415 - . ID=CGI_10018696; scaffold368 WUBlastX DNA_IS4EU 89082 90041 65 + . . scaffold368 GLEAN mRNA 88119 88631 0.999415 - . ID=CGI_10018696; scaffold368 WUBlastX DNA_Kolobok-IS4 88119 88631 54 + . . scaffold368 GLEAN mRNA 89322 90167 0.999415 - . ID=CGI_10018696; scaffold368 WUBlastX DNA_IS4EU 89322 90167 149 + . . scaffold368 GLEAN mRNA 89028 89342 0.999415 - . ID=CGI_10018696; scaffold368 WUBlastX DNA_IS4EU 89028 89342 46 + . . scaffold368 GLEAN mRNA 90561 91697 0.999415 - . ID=CGI_10018696; scaffold368 WUBlastX DNA_IS4EU 90561 91697 556 - . . scaffold368 GLEAN mRNA 131502 131572 1 + . ID=CGI_10018700; scaffold368 TRF Tandem_Repeat 131502 131572 142 + . . scaffold368 GLEAN mRNA 131570 131594 1 + . ID=CGI_10018700; scaffold368 TRF Tandem_Repeat 131570 131594 50 + . . scaffold368 GLEAN mRNA 131966 132042 1 + . ID=CGI_10018700; scaffold368 TRF Tandem_Repeat 131966 132042 138 + . . scaffold368 GLEAN mRNA 133860 133896 1 + . ID=CGI_10018700; scaffold368 TRF Tandem_Repeat 133860 133896 74 + . . scaffold368 GLEAN mRNA 135146 135191 1 + . ID=CGI_10018700; scaffold368 TRF Tandem_Repeat 135146 135191 85 + . . scaffold368 GLEAN mRNA 355384 355424 0.999624 + . ID=CGI_10018712; scaffold368 TRF Tandem_Repeat 355384 355424 82 + . . scaffold368 GLEAN mRNA 357336 357460 0.999624 + . ID=CGI_10018712; scaffold368 TRF Tandem_Repeat 357336 357460 164 + . . scaffold368 GLEAN mRNA 466913 466987 0.348019 + . ID=CGI_10018714; scaffold368 TRF Tandem_Repeat 466913 466987 136 + . . scaffold368 GLEAN mRNA 487684 489363 0.348019 + . ID=CGI_10018714; scaffold368 WUBlastX LTR_Gypsy 487684 489363 1076 - . . scaffold368 GLEAN mRNA 487601 487693 0.348019 + . ID=CGI_10018714; scaffold368 WUBlastX LTR_Copia 487601 487693 24 - . . scaffold368 GLEAN mRNA 489954 491180 0.348019 + . ID=CGI_10018714; scaffold368 WUBlastX LTR_Gypsy 489954 491180 421 - . . scaffold368 GLEAN mRNA 489963 490874 0.348019 + . ID=CGI_10018714; scaffold368 WUBlastX LTR_Gypsy 489963 490874 780 - . . scaffold368 GLEAN mRNA 487831 489936 0.348019 + . ID=CGI_10018714; scaffold368 WUBlastX LTR_Gypsy-Cigr 487831 489936 1059 - . . scaffold368 GLEAN mRNA 492032 492805 0.348019 + . ID=CGI_10018714; scaffold368 WUBlastX LTR_Gypsy 492032 492805 204 - . . scaffold368 GLEAN mRNA 490933 491892 0.348019 + . ID=CGI_10018714; scaffold368 WUBlastX LTR_Gypsy 490933 491892 212 - . . scaffold374 GLEAN mRNA 57841 57889 0.696664 + . ID=CGI_10018717; scaffold374 TRF Tandem_Repeat 57841 57889 98 + . . scaffold374 GLEAN mRNA 55887 56090 0.696664 + . ID=CGI_10018717; scaffold374 WUBlastX LINE_L1-Tx1 55887 56090 56 + . . scaffold374 GLEAN mRNA 166335 166550 0.970084 - . ID=CGI_10018719; scaffold374 WUBlastX DNA_hAT-Tip100 166335 166550 58 - . . scaffold374 GLEAN mRNA 166640 166855 0.970084 - . ID=CGI_10018719; scaffold374 WUBlastX DNA_hAT-Tip100 166640 166855 102 - . . scaffold374 GLEAN mRNA 166679 166951 0.970084 - . ID=CGI_10018719; scaffold374 WUBlastX DNA_hAT-Tip100 166679 166951 45 - . . scaffold374 GLEAN mRNA 167048 167818 0.970084 - . ID=CGI_10018719; scaffold374 WUBlastX DNA_hAT-Tip100 167048 167818 142 - . . scaffold374 GLEAN mRNA 367229 367318 0.447148 + . ID=CGI_10018721; scaffold374 WUBlastX LINE_I 367229 367318 24 + . . scaffold374 GLEAN mRNA 382912 382961 0.971738 - . ID=CGI_10018723; scaffold374 TRF Tandem_Repeat 382912 382961 52 + . . scaffold374 GLEAN mRNA 384457 384887 0.971738 - . ID=CGI_10018723; scaffold374 TRF Tandem_Repeat 384457 384887 234 + . . scaffold374 GLEAN mRNA 384445 384890 0.971738 - . ID=CGI_10018723; scaffold374 TRF Tandem_Repeat 384445 384890 291 + . . scaffold374 GLEAN mRNA 384721 384941 0.971738 - . ID=CGI_10018723; scaffold374 TRF Tandem_Repeat 384721 384941 217 + . . scaffold374 GLEAN mRNA 384811 384962 0.971738 - . ID=CGI_10018723; scaffold374 TRF Tandem_Repeat 384811 384962 111 + . . scaffold374 GLEAN mRNA 385162 385263 0.971738 - . ID=CGI_10018723; scaffold374 TRF Tandem_Repeat 385162 385263 150 + . . scaffold374 GLEAN mRNA 385121 385263 0.971738 - . ID=CGI_10018723; scaffold374 TRF Tandem_Repeat 385121 385263 162 + . . scaffold374 GLEAN mRNA 407594 407744 0.985153 - . ID=CGI_10018724; scaffold374 TRF Tandem_Repeat 407594 407744 225 + . . scaffold374 GLEAN mRNA 405976 406953 0.985153 - . ID=CGI_10018724; scaffold374 WUBlastX LINE_RTE-BovB 405976 406953 158 + . . scaffold374 GLEAN mRNA 411040 411078 0.985153 - . ID=CGI_10018724; scaffold374 TRF Tandem_Repeat 411040 411078 78 + . . scaffold374 GLEAN mRNA 411180 411220 0.985153 - . ID=CGI_10018724; scaffold374 TRF Tandem_Repeat 411180 411220 82 + . . scaffold374 GLEAN mRNA 518418 518475 0.702338 + . ID=CGI_10018726; scaffold374 TRF Tandem_Repeat 518418 518475 116 + . . scaffold374 GLEAN mRNA 524915 524955 0.702338 + . ID=CGI_10018726; scaffold374 TRF Tandem_Repeat 524915 524955 57 + . . scaffold374 GLEAN mRNA 538908 538968 0.702338 + . ID=CGI_10018726; scaffold374 TRF Tandem_Repeat 538908 538968 50 + . . scaffold374 GLEAN mRNA 551318 551721 0.992483 - . ID=CGI_10018727; scaffold374 TRF Tandem_Repeat 551318 551721 151 + . . scaffold374 GLEAN mRNA 551346 552438 0.992483 - . ID=CGI_10018727; scaffold374 TRF Tandem_Repeat 551346 552438 497 + . . scaffold374 GLEAN mRNA 551746 552438 0.992483 - . ID=CGI_10018727; scaffold374 TRF Tandem_Repeat 551746 552438 430 + . . scaffold374 GLEAN mRNA 551793 551868 0.992483 - . ID=CGI_10018727; scaffold374 TRF Tandem_Repeat 551793 551868 52 + . . scaffold1123 GLEAN mRNA 7062 7091 0.554793 + . ID=CGI_10018729; scaffold1123 TRF Tandem_Repeat 7062 7091 51 + . . scaffold1123 GLEAN mRNA 13815 14171 0.554793 + . ID=CGI_10018729; scaffold1123 WUBlastX LINE_RTE-BovB 13815 14171 141 + . . scaffold1123 GLEAN mRNA 14388 14735 0.554793 + . ID=CGI_10018729; scaffold1123 WUBlastX LINE_RTE-BovB 14388 14735 391 + . . scaffold1123 GLEAN mRNA 14704 15384 0.554793 + . ID=CGI_10018729; scaffold1123 WUBlastX LINE_RTE-BovB 14704 15384 494 + . . scaffold1123 GLEAN mRNA 14301 14729 0.554793 + . ID=CGI_10018729; scaffold1123 WUBlastX LINE_RTE-BovB 14301 14729 153 + . . scaffold1123 GLEAN mRNA 13920 14234 0.554793 + . ID=CGI_10018729; scaffold1123 WUBlastX LINE_RTE-BovB 13920 14234 226 + . . scaffold1123 GLEAN mRNA 14905 15474 0.554793 + . ID=CGI_10018729; scaffold1123 WUBlastX LINE_RTE-BovB 14905 15474 54 + . . scaffold1123 GLEAN mRNA 13959 14333 0.554793 + . ID=CGI_10018729; scaffold1123 WUBlastX LINE_RTE-BovB 13959 14333 134 + . . scaffold1123 GLEAN mRNA 256097 256141 0.990001 + . ID=CGI_10018735; scaffold1123 TRF Tandem_Repeat 256097 256141 90 + . . scaffold1123 GLEAN mRNA 256699 256740 0.990001 + . ID=CGI_10018735; scaffold1123 TRF Tandem_Repeat 256699 256740 84 + . . scaffold1123 GLEAN mRNA 335225 335551 0.999996 - . ID=CGI_10018737; scaffold1123 WUBlastX DNA_IS4EU 335225 335719 26 - . . scaffold1123 GLEAN mRNA 335354 335551 0.999996 - . ID=CGI_10018737; scaffold1123 WUBlastX DNA_Kolobok-IS4 335354 335704 68 - . . scaffold1123 GLEAN mRNA 413311 413628 0.812314 + . ID=CGI_10018742; scaffold1123 TRF Tandem_Repeat 413311 413628 223 + . . scaffold1123 GLEAN mRNA 413623 414248 0.812314 + . ID=CGI_10018742; scaffold1123 TRF Tandem_Repeat 413623 414248 587 + . . scaffold1123 GLEAN mRNA 427699 427751 0.812314 + . ID=CGI_10018742; scaffold1123 TRF Tandem_Repeat 427699 427751 106 + . . scaffold1123 GLEAN mRNA 445896 445971 0.647294 + . ID=CGI_10018743; scaffold1123 TRF Tandem_Repeat 445896 445971 73 + . . scaffold1123 GLEAN mRNA 554046 554079 1 - . ID=CGI_10018746; scaffold1123 TRF Tandem_Repeat 554046 554079 68 + . . scaffold1123 GLEAN mRNA 562872 563841 0.999675 - . ID=CGI_10018747; scaffold1123 TRF Tandem_Repeat 562872 563841 654 + . . scaffold1123 GLEAN mRNA 562979 563797 0.999675 - . ID=CGI_10018747; scaffold1123 TRF Tandem_Repeat 562979 563797 527 + . . scaffold576 GLEAN mRNA 9962 10008 0.999676 - . ID=CGI_10018748; scaffold576 TRF Tandem_Repeat 9962 10008 94 + . . scaffold576 GLEAN mRNA 15558 15654 0.999999 - . ID=CGI_10018749; scaffold576 TRF Tandem_Repeat 15558 15654 133 + . . scaffold576 GLEAN mRNA 55331 55377 0.482544 + . ID=CGI_10018752; scaffold576 TRF Tandem_Repeat 55331 55377 94 + . . scaffold576 GLEAN mRNA 69760 69788 0.499918 - . ID=CGI_10018753; scaffold576 TRF Tandem_Repeat 69760 69788 58 + . . scaffold576 GLEAN mRNA 75154 76020 0.499918 - . ID=CGI_10018753; scaffold576 TRF Tandem_Repeat 75154 76020 1303 + . . scaffold576 GLEAN mRNA 78574 78624 0.499918 - . ID=CGI_10018753; scaffold576 TRF Tandem_Repeat 78574 78624 102 + . . scaffold576 GLEAN mRNA 79771 79813 0.499918 - . ID=CGI_10018753; scaffold576 TRF Tandem_Repeat 79771 79813 86 + . . scaffold576 GLEAN mRNA 96176 96211 0.998619 - . ID=CGI_10018754; scaffold576 TRF Tandem_Repeat 96176 96211 63 + . . scaffold576 GLEAN mRNA 114797 114844 0.384406 - . ID=CGI_10018755; scaffold576 TRF Tandem_Repeat 114797 114844 87 + . . scaffold576 GLEAN mRNA 186332 186371 0.556817 + . ID=CGI_10018757; scaffold576 TRF Tandem_Repeat 186332 186371 80 + . . scaffold576 GLEAN mRNA 226724 226796 0.999949 - . ID=CGI_10018765; scaffold576 TRF Tandem_Repeat 226724 226796 137 + . . scaffold576 GLEAN mRNA 229698 229767 0.999949 - . ID=CGI_10018765; scaffold576 TRF Tandem_Repeat 229698 229767 140 + . . scaffold576 GLEAN mRNA 257123 257168 0.999999 + . ID=CGI_10018767; scaffold576 TRF Tandem_Repeat 257123 257168 92 + . . scaffold576 GLEAN mRNA 290991 291025 1 - . ID=CGI_10018771; scaffold576 TRF Tandem_Repeat 290991 291025 70 + . . scaffold576 GLEAN mRNA 319105 319150 0.999395 - . ID=CGI_10018773; scaffold576 TRF Tandem_Repeat 319105 319150 92 + . . scaffold576 GLEAN mRNA 315437 316135 0.999395 - . ID=CGI_10018773; scaffold576 WUBlastX DNA_hAT 315437 316135 185 - . . scaffold576 GLEAN mRNA 315302 316675 0.999395 - . ID=CGI_10018773; scaffold576 WUBlastX DNA_hAT 315302 316675 183 - . . scaffold576 GLEAN mRNA 316863 317015 0.999395 - . ID=CGI_10018773; scaffold576 WUBlastX DNA_hAT 316863 317015 43 - . . scaffold576 GLEAN mRNA 317774 317989 0.999395 - . ID=CGI_10018773; scaffold576 WUBlastX DNA_hAT 317774 317989 60 - . . scaffold576 GLEAN mRNA 331505 332233 0.999675 + . ID=CGI_10018774; scaffold576 TRF Tandem_Repeat 331505 332233 696 + . . scaffold576 GLEAN mRNA 334229 334271 0.999675 + . ID=CGI_10018774; scaffold576 TRF Tandem_Repeat 334229 334271 86 + . . scaffold576 GLEAN mRNA 349288 349334 1 - . ID=CGI_10018775; scaffold576 TRF Tandem_Repeat 349288 349334 94 + . . scaffold576 GLEAN mRNA 386636 386715 0.903197 + . ID=CGI_10018778; scaffold576 TRF Tandem_Repeat 386636 386715 132 + . . scaffold576 GLEAN mRNA 444434 444490 0.841376 - . ID=CGI_10018782; scaffold576 WUBlastX LTR_Gypsy 444434 444490 21 - . . scaffold576 GLEAN mRNA 469109 469162 0.999947 - . ID=CGI_10018783; scaffold576 TRF Tandem_Repeat 469109 469162 81 + . . scaffold576 GLEAN mRNA 489508 489560 0.277546 - . ID=CGI_10018784; scaffold576 TRF Tandem_Repeat 489508 489560 67 + . . scaffold576 GLEAN mRNA 493629 493895 0.277546 - . ID=CGI_10018784; scaffold576 WUBlastX DNA_Academ 493629 493895 62 - . . scaffold576 GLEAN mRNA 493918 494013 0.277546 - . ID=CGI_10018784; scaffold576 WUBlastX DNA_Academ 493918 494013 30 - . . scaffold422 GLEAN mRNA 16148 16182 0.787573 + . ID=CGI_10018792; scaffold422 TRF Tandem_Repeat 16148 16182 70 + . . scaffold422 GLEAN mRNA 20499 20525 0.787573 + . ID=CGI_10018792; scaffold422 TRF Tandem_Repeat 20499 20525 54 + . . scaffold422 GLEAN mRNA 112162 112320 1 - . ID=CGI_10018794; scaffold422 TRF Tandem_Repeat 112162 112320 192 + . . scaffold422 GLEAN mRNA 117827 118369 0.999998 - . ID=CGI_10018795; scaffold422 WUBlastX LINE_L2 117827 118369 141 + . . scaffold422 GLEAN mRNA 164562 164668 0.990195 + . ID=CGI_10018796; scaffold422 TRF Tandem_Repeat 164562 164668 74 + . . scaffold422 GLEAN mRNA 163671 163857 0.990195 + . ID=CGI_10018796; scaffold422 TRF Tandem_Repeat 163671 163857 187 + . . scaffold422 GLEAN mRNA 181152 181180 0.980281 + . ID=CGI_10018798; scaffold422 TRF Tandem_Repeat 181152 181180 58 + . . scaffold422 GLEAN mRNA 184799 184860 0.980281 + . ID=CGI_10018798; scaffold422 TRF Tandem_Repeat 184799 184860 70 + . . scaffold422 GLEAN mRNA 184792 184861 0.980281 + . ID=CGI_10018798; scaffold422 TRF Tandem_Repeat 184792 184861 140 + . . scaffold422 GLEAN mRNA 186206 186307 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 186206 186307 39 - . . scaffold422 GLEAN mRNA 189465 189770 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 189465 189770 27 - . . scaffold422 GLEAN mRNA 189784 189939 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 189784 189939 59 - . . scaffold422 GLEAN mRNA 185389 185700 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 185389 185700 45 - . . scaffold422 GLEAN mRNA 186179 186307 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 186179 186307 24 - . . scaffold422 GLEAN mRNA 185470 185691 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 185470 185691 80 - . . scaffold422 GLEAN mRNA 185733 186137 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 185733 186137 51 - . . scaffold422 GLEAN mRNA 186218 186340 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 186218 186340 23 - . . scaffold422 GLEAN mRNA 189685 189942 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 189685 189942 40 - . . scaffold422 GLEAN mRNA 189745 189939 0.980281 + . ID=CGI_10018798; scaffold422 WUBlastX LINE_RTE-X 189745 189939 50 - . . scaffold422 GLEAN mRNA 217149 217249 0.993907 + . ID=CGI_10018801; scaffold422 TRF Tandem_Repeat 217149 217249 61 + . . scaffold422 GLEAN mRNA 217682 217845 0.993907 + . ID=CGI_10018801; scaffold422 TRF Tandem_Repeat 217682 217845 129 + . . scaffold422 GLEAN mRNA 219116 219460 0.993907 + . ID=CGI_10018801; scaffold422 TRF Tandem_Repeat 219116 219460 138 + . . scaffold422 GLEAN mRNA 219156 219460 0.993907 + . ID=CGI_10018801; scaffold422 TRF Tandem_Repeat 219156 219460 195 + . . scaffold422 GLEAN mRNA 219417 219804 0.993907 + . ID=CGI_10018801; scaffold422 TRF Tandem_Repeat 219417 219804 253 + . . scaffold422 GLEAN mRNA 219241 220547 0.993907 + . ID=CGI_10018801; scaffold422 TRF Tandem_Repeat 219241 220547 682 + . . scaffold422 GLEAN mRNA 219214 220531 0.993907 + . ID=CGI_10018801; scaffold422 TRF Tandem_Repeat 219214 220531 771 + . . scaffold422 GLEAN mRNA 219671 220521 0.993907 + . ID=CGI_10018801; scaffold422 TRF Tandem_Repeat 219671 220521 461 + . . scaffold422 GLEAN mRNA 219809 220547 0.993907 + . ID=CGI_10018801; scaffold422 TRF Tandem_Repeat 219809 220547 746 + . . scaffold422 GLEAN mRNA 220897 220991 0.993907 + . ID=CGI_10018801; scaffold422 TRF Tandem_Repeat 220897 220991 151 + . . scaffold422 GLEAN mRNA 235042 235311 1 + . ID=CGI_10018802; scaffold422 TRF Tandem_Repeat 235042 235311 441 + . . scaffold422 GLEAN mRNA 235680 236094 1 + . ID=CGI_10018802; scaffold422 TRF Tandem_Repeat 235680 236094 521 + . . scaffold422 GLEAN mRNA 239424 239524 0.611438 + . ID=CGI_10018803; scaffold422 TRF Tandem_Repeat 239424 239524 107 + . . scaffold422 GLEAN mRNA 239514 239587 0.611438 + . ID=CGI_10018803; scaffold422 TRF Tandem_Repeat 239514 239587 130 + . . scaffold422 GLEAN mRNA 239514 239587 0.611438 + . ID=CGI_10018803; scaffold422 TRF Tandem_Repeat 239514 239587 76 + . . scaffold422 GLEAN mRNA 242944 243061 0.966645 + . ID=CGI_10018804; scaffold422 TRF Tandem_Repeat 242944 243061 218 + . . scaffold422 GLEAN mRNA 243451 243503 0.966645 + . ID=CGI_10018804; scaffold422 TRF Tandem_Repeat 243451 243503 106 + . . scaffold422 GLEAN mRNA 245106 245165 0.966645 + . ID=CGI_10018804; scaffold422 TRF Tandem_Repeat 245106 245165 120 + . . scaffold422 GLEAN mRNA 284899 285276 1 - . ID=CGI_10018805; scaffold422 WUBlastX LINE_Penelope 284899 285276 20 - . . scaffold422 GLEAN mRNA 289960 290376 1 - . ID=CGI_10018806; scaffold422 WUBlastX LINE_L1 289960 290376 24 - . . scaffold422 GLEAN mRNA 343489 343549 0.924006 + . ID=CGI_10018809; scaffold422 TRF Tandem_Repeat 343489 343549 59 + . . scaffold422 GLEAN mRNA 345476 345514 0.924006 + . ID=CGI_10018809; scaffold422 TRF Tandem_Repeat 345476 345514 78 + . . scaffold422 GLEAN mRNA 449142 449187 1 - . ID=CGI_10018811; scaffold422 TRF Tandem_Repeat 449142 449187 92 + . . scaffold422 GLEAN mRNA 481052 481360 0.999995 - . ID=CGI_10018813; scaffold422 TRF Tandem_Repeat 481052 481360 408 + . . scaffold298 GLEAN mRNA 3696 3731 0.51163 + . ID=CGI_10018814; scaffold298 TRF Tandem_Repeat 3696 3731 72 + . . scaffold298 GLEAN mRNA 12545 15604 1 - . ID=CGI_10018816; scaffold298 WUBlastX DNA_Maverick 12545 15604 2229 - . . scaffold298 GLEAN mRNA 13616 16006 1 - . ID=CGI_10018816; scaffold298 WUBlastX DNA_Maverick 13616 16006 1306 - . . scaffold298 GLEAN mRNA 67445 67584 0.66079 + . ID=CGI_10018818; scaffold298 TRF Tandem_Repeat 67445 67584 135 + . . scaffold298 GLEAN mRNA 75520 75579 0.809704 - . ID=CGI_10018820; scaffold298 TRF Tandem_Repeat 75520 75579 120 + . . scaffold298 GLEAN mRNA 76640 76722 0.809704 - . ID=CGI_10018820; scaffold298 TRF Tandem_Repeat 76640 76722 166 + . . scaffold298 GLEAN mRNA 79287 79973 0.809704 - . ID=CGI_10018820; scaffold298 TRF Tandem_Repeat 79287 79973 990 + . . scaffold298 GLEAN mRNA 80247 80321 0.809704 - . ID=CGI_10018820; scaffold298 TRF Tandem_Repeat 80247 80321 141 + . . scaffold298 GLEAN mRNA 137646 137689 0.99543 + . ID=CGI_10018821; scaffold298 TRF Tandem_Repeat 137646 137689 88 + . . scaffold298 GLEAN mRNA 140456 140558 0.99543 + . ID=CGI_10018821; scaffold298 TRF Tandem_Repeat 140456 140558 87 + . . scaffold298 GLEAN mRNA 140385 140635 0.99543 + . ID=CGI_10018821; scaffold298 TRF Tandem_Repeat 140385 140635 202 + . . scaffold298 GLEAN mRNA 140536 140717 0.99543 + . ID=CGI_10018821; scaffold298 TRF Tandem_Repeat 140536 140717 123 + . . scaffold298 GLEAN mRNA 279781 279837 0.999682 - . ID=CGI_10018823; scaffold298 TRF Tandem_Repeat 279781 279837 114 + . . scaffold298 GLEAN mRNA 281889 281989 0.999682 - . ID=CGI_10018823; scaffold298 TRF Tandem_Repeat 281889 281989 202 + . . scaffold298 GLEAN mRNA 281290 281688 0.999682 - . ID=CGI_10018823; scaffold298 WUBlastX LTR_Gypsy 281290 281688 109 - . . scaffold298 GLEAN mRNA 281042 281422 0.999682 - . ID=CGI_10018823; scaffold298 WUBlastX LTR_Gypsy 281042 281422 33 - . . scaffold298 GLEAN mRNA 281365 281703 0.999682 - . ID=CGI_10018823; scaffold298 WUBlastX LTR_Gypsy 281365 281703 147 - . . scaffold298 GLEAN mRNA 281371 281655 0.999682 - . ID=CGI_10018823; scaffold298 WUBlastX LTR_Gypsy-Cigr 281371 281655 151 - . . scaffold298 GLEAN mRNA 281144 281383 0.999682 - . ID=CGI_10018823; scaffold298 WUBlastX LTR_Gypsy 281144 281383 80 - . . scaffold298 GLEAN mRNA 277879 278697 0.999682 - . ID=CGI_10018823; scaffold298 WUBlastX LTR_Gypsy 277879 278697 433 - . . scaffold298 GLEAN mRNA 277708 278682 0.999682 - . ID=CGI_10018823; scaffold298 WUBlastX LTR_Gypsy 277708 278682 169 - . . scaffold298 GLEAN mRNA 298574 298617 0.999402 - . ID=CGI_10018824; scaffold298 TRF Tandem_Repeat 298574 298617 88 + . . scaffold298 GLEAN mRNA 307965 308012 0.999402 - . ID=CGI_10018824; scaffold298 TRF Tandem_Repeat 307965 308012 96 + . . scaffold298 GLEAN mRNA 299175 299453 0.999402 - . ID=CGI_10018824; scaffold298 WUBlastX LTR_Ngaro 299175 299453 123 + . . scaffold298 GLEAN mRNA 299124 299459 0.999402 - . ID=CGI_10018824; scaffold298 WUBlastX LTR_Ngaro 299124 299459 92 + . . scaffold298 GLEAN mRNA 299028 299453 0.999402 - . ID=CGI_10018824; scaffold298 WUBlastX LTR_Ngaro 299028 299453 79 + . . scaffold298 GLEAN mRNA 370071 370105 0.650954 - . ID=CGI_10018828; scaffold298 TRF Tandem_Repeat 370071 370105 70 + . . scaffold298 GLEAN mRNA 438059 439130 0.38247 - . ID=CGI_10018831; scaffold298 TRF Tandem_Repeat 438059 439130 1545 + . . scaffold298 GLEAN mRNA 451468 451968 0.901953 + . ID=CGI_10018832; scaffold298 WUBlastX DNA_IS4EU 451468 451968 34 + . . scaffold298 GLEAN mRNA 452298 452423 0.901953 + . ID=CGI_10018832; scaffold298 WUBlastX DNA_IS4EU 452298 452423 24 + . . scaffold298 GLEAN mRNA 477248 477276 0.879445 - . ID=CGI_10018835; scaffold298 TRF Tandem_Repeat 477248 477276 58 + . . scaffold298 GLEAN mRNA 477276 477320 0.879445 - . ID=CGI_10018835; scaffold298 TRF Tandem_Repeat 477276 477320 90 + . . scaffold298 GLEAN mRNA 483492 483566 0.879445 - . ID=CGI_10018835; scaffold298 TRF Tandem_Repeat 483492 483566 141 + . . scaffold298 GLEAN mRNA 506243 506284 0.635848 + . ID=CGI_10018836; scaffold298 TRF Tandem_Repeat 506243 506284 84 + . . scaffold298 GLEAN mRNA 518895 519536 0.635848 + . ID=CGI_10018836; scaffold298 WUBlastX LINE_L2 518895 519536 108 + . . scaffold298 GLEAN mRNA 519156 519536 0.635848 + . ID=CGI_10018836; scaffold298 WUBlastX LINE_L2 519156 519536 170 + . . scaffold298 GLEAN mRNA 533899 533974 0.588026 + . ID=CGI_10018837; scaffold298 TRF Tandem_Repeat 533899 533974 73 + . . scaffold298 GLEAN mRNA 544151 544260 0.980195 - . ID=CGI_10018838; scaffold298 TRF Tandem_Repeat 544151 544260 220 + . . scaffold298 GLEAN mRNA 546958 547000 0.980195 - . ID=CGI_10018838; scaffold298 TRF Tandem_Repeat 546958 547000 86 + . . scaffold298 GLEAN mRNA 550045 550132 0.980195 - . ID=CGI_10018838; scaffold298 TRF Tandem_Repeat 550045 550132 74 + . . scaffold298 GLEAN mRNA 555266 555429 0.549052 - . ID=CGI_10018839; scaffold298 TRF Tandem_Repeat 555266 555429 238 + . . scaffold298 GLEAN mRNA 555726 555754 0.549052 - . ID=CGI_10018839; scaffold298 TRF Tandem_Repeat 555726 555754 58 + . . scaffold298 GLEAN mRNA 561501 561542 0.549052 - . ID=CGI_10018839; scaffold298 TRF Tandem_Repeat 561501 561542 59 + . . scaffold547 GLEAN mRNA 87792 88269 0.730761 + . ID=CGI_10018842; scaffold547 TRF Tandem_Repeat 87792 88269 498 + . . scaffold547 GLEAN mRNA 87792 88269 0.730761 + . ID=CGI_10018842; scaffold547 TRF Tandem_Repeat 87792 88269 510 + . . scaffold547 GLEAN mRNA 116221 116270 0.730761 + . ID=CGI_10018842; scaffold547 TRF Tandem_Repeat 116221 116270 57 + . . scaffold547 GLEAN mRNA 129244 129285 0.730761 + . ID=CGI_10018842; scaffold547 TRF Tandem_Repeat 129244 129285 84 + . . scaffold547 GLEAN mRNA 135667 135818 0.730761 + . ID=CGI_10018842; scaffold547 TRF Tandem_Repeat 135667 135818 107 + . . scaffold547 GLEAN mRNA 137230 137271 0.730761 + . ID=CGI_10018842; scaffold547 TRF Tandem_Repeat 137230 137271 50 + . . scaffold547 GLEAN mRNA 206823 207068 0.996504 + . ID=CGI_10018847; scaffold547 WUBlastX DNA_TcMar-Pogo 206823 207068 136 - . . scaffold547 GLEAN mRNA 206733 207044 0.996504 + . ID=CGI_10018847; scaffold547 WUBlastX DNA_TcMar-Tigge 206733 207044 64 - . . scaffold547 GLEAN mRNA 330551 330610 0.934645 + . ID=CGI_10018854; scaffold547 TRF Tandem_Repeat 330551 330610 93 + . . scaffold547 GLEAN mRNA 339092 339126 0.934645 + . ID=CGI_10018854; scaffold547 TRF Tandem_Repeat 339092 339126 61 + . . scaffold547 GLEAN mRNA 431956 432198 0.497938 - . ID=CGI_10018857; scaffold547 WUBlastX DNA_Kolobok-IS4 431956 432198 20 - . . scaffold547 GLEAN mRNA 432225 432524 0.497938 - . ID=CGI_10018857; scaffold547 WUBlastX DNA_Kolobok-IS4 432225 432524 41 - . . scaffold547 GLEAN mRNA 429623 429841 0.497938 - . ID=CGI_10018857; scaffold547 WUBlastX LTR_Ngaro 429623 429841 26 + . . scaffold547 GLEAN mRNA 429638 429799 0.497938 - . ID=CGI_10018857; scaffold547 WUBlastX LTR_Ngaro 429638 429799 52 + . . scaffold547 GLEAN mRNA 430314 430430 0.497938 - . ID=CGI_10018857; scaffold547 WUBlastX LTR_Ngaro 430314 430430 36 + . . scaffold547 GLEAN mRNA 429502 429603 0.497938 - . ID=CGI_10018857; scaffold547 WUBlastX LTR_Ngaro 429502 429603 24 + . . scaffold547 GLEAN mRNA 429517 429600 0.497938 - . ID=CGI_10018857; scaffold547 WUBlastX LTR_Ngaro 429517 429600 28 + . . scaffold547 GLEAN mRNA 454083 454664 0.872777 + . ID=CGI_10018858; scaffold547 WUBlastX LTR_Gypsy 454083 454664 114 + . . scaffold547 GLEAN mRNA 454080 454526 0.872777 + . ID=CGI_10018858; scaffold547 WUBlastX LTR_Gypsy-Cigr 454080 454526 149 + . . scaffold914 GLEAN mRNA 49373 49478 0.763159 - . ID=CGI_10018867; scaffold914 TRF Tandem_Repeat 49373 49478 97 + . . scaffold914 GLEAN mRNA 49380 49477 0.763159 - . ID=CGI_10018867; scaffold914 TRF Tandem_Repeat 49380 49477 141 + . . scaffold914 GLEAN mRNA 102058 102090 1 + . ID=CGI_10018871; scaffold914 TRF Tandem_Repeat 102058 102090 66 + . . scaffold914 GLEAN mRNA 124557 124586 0.792808 + . ID=CGI_10018872; scaffold914 TRF Tandem_Repeat 124557 124586 60 + . . scaffold914 GLEAN mRNA 138749 138790 0.792808 + . ID=CGI_10018872; scaffold914 TRF Tandem_Repeat 138749 138790 84 + . . scaffold914 GLEAN mRNA 138749 138790 0.999351 - . ID=CGI_10018873; scaffold914 TRF Tandem_Repeat 138749 138790 84 + . . scaffold914 GLEAN mRNA 152896 152940 0.997642 - . ID=CGI_10018874; scaffold914 TRF Tandem_Repeat 152896 152940 63 + . . scaffold914 GLEAN mRNA 161570 161626 0.998897 + . ID=CGI_10018875; scaffold914 TRF Tandem_Repeat 161570 161626 107 + . . scaffold914 GLEAN mRNA 169877 169920 1 + . ID=CGI_10018877; scaffold914 TRF Tandem_Repeat 169877 169920 88 + . . scaffold914 GLEAN mRNA 174064 174112 1 + . ID=CGI_10018878; scaffold914 TRF Tandem_Repeat 174064 174112 71 + . . scaffold914 GLEAN mRNA 178399 178595 1 + . ID=CGI_10018878; scaffold914 TRF Tandem_Repeat 178399 178595 166 + . . scaffold914 GLEAN mRNA 178491 179047 1 + . ID=CGI_10018878; scaffold914 TRF Tandem_Repeat 178491 179047 652 + . . scaffold914 GLEAN mRNA 178572 179047 1 + . ID=CGI_10018878; scaffold914 TRF Tandem_Repeat 178572 179047 677 + . . scaffold914 GLEAN mRNA 178491 179047 1 + . ID=CGI_10018878; scaffold914 TRF Tandem_Repeat 178491 179047 672 + . . scaffold914 GLEAN mRNA 182485 182856 0.702385 + . ID=CGI_10018879; scaffold914 TRF Tandem_Repeat 182485 182856 464 + . . scaffold914 GLEAN mRNA 193219 193274 0.499097 + . ID=CGI_10018880; scaffold914 TRF Tandem_Repeat 193219 193274 112 + . . scaffold914 GLEAN mRNA 193272 193302 0.499097 + . ID=CGI_10018880; scaffold914 TRF Tandem_Repeat 193272 193302 53 + . . scaffold914 GLEAN mRNA 194552 194691 0.499097 + . ID=CGI_10018880; scaffold914 TRF Tandem_Repeat 194552 194691 81 + . . scaffold914 GLEAN mRNA 194718 194911 0.499097 + . ID=CGI_10018880; scaffold914 TRF Tandem_Repeat 194718 194911 138 + . . scaffold914 GLEAN mRNA 202776 202817 0.499097 + . ID=CGI_10018880; scaffold914 TRF Tandem_Repeat 202776 202817 84 + . . scaffold914 GLEAN mRNA 203964 204008 0.499097 + . ID=CGI_10018880; scaffold914 TRF Tandem_Repeat 203964 204008 90 + . . scaffold914 GLEAN mRNA 209130 209161 0.499097 + . ID=CGI_10018880; scaffold914 TRF Tandem_Repeat 209130 209161 64 + . . scaffold914 GLEAN mRNA 217976 218056 0.813948 - . ID=CGI_10018881; scaffold914 TRF Tandem_Repeat 217976 218056 75 + . . scaffold914 GLEAN mRNA 217982 218052 0.813948 - . ID=CGI_10018881; scaffold914 TRF Tandem_Repeat 217982 218052 79 + . . scaffold914 GLEAN mRNA 256049 256747 0.997448 + . ID=CGI_10018883; scaffold914 WUBlastX DNA_TcMar-Tc1 256049 256747 210 - . . scaffold914 GLEAN mRNA 256668 257072 0.997448 + . ID=CGI_10018883; scaffold914 WUBlastX DNA_TcMar-Tc1 256668 257072 120 - . . scaffold914 GLEAN mRNA 256049 256633 0.997448 + . ID=CGI_10018883; scaffold914 WUBlastX DNA_TcMar-Tc1 256049 256633 262 - . . scaffold914 GLEAN mRNA 264623 264699 0.997448 + . ID=CGI_10018883; scaffold914 TRF Tandem_Repeat 264623 264699 147 + . . scaffold914 GLEAN mRNA 270306 270586 0.997448 + . ID=CGI_10018883; scaffold914 TRF Tandem_Repeat 270306 270586 244 + . . scaffold914 GLEAN mRNA 270954 271254 0.997448 + . ID=CGI_10018883; scaffold914 TRF Tandem_Repeat 270954 271254 136 + . . scaffold914 GLEAN mRNA 270954 271234 0.997448 + . ID=CGI_10018883; scaffold914 TRF Tandem_Repeat 270954 271234 218 + . . scaffold914 GLEAN mRNA 286914 286941 1 + . ID=CGI_10018885; scaffold914 TRF Tandem_Repeat 286914 286941 56 + . . scaffold914 GLEAN mRNA 309292 309468 0.325587 + . ID=CGI_10018887; scaffold914 TRF Tandem_Repeat 309292 309468 192 + . . scaffold914 GLEAN mRNA 312477 312508 0.325587 + . ID=CGI_10018887; scaffold914 TRF Tandem_Repeat 312477 312508 55 + . . scaffold914 GLEAN mRNA 312620 313367 0.325587 + . ID=CGI_10018887; scaffold914 TRF Tandem_Repeat 312620 313367 948 + . . scaffold914 GLEAN mRNA 315112 315177 0.325587 + . ID=CGI_10018887; scaffold914 TRF Tandem_Repeat 315112 315177 107 + . . scaffold914 GLEAN mRNA 315113 315174 0.325587 + . ID=CGI_10018887; scaffold914 TRF Tandem_Repeat 315113 315174 63 + . . scaffold914 GLEAN mRNA 315119 315177 0.325587 + . ID=CGI_10018887; scaffold914 TRF Tandem_Repeat 315119 315177 82 + . . scaffold914 GLEAN mRNA 376862 377817 0.989218 - . ID=CGI_10018889; scaffold914 TRF Tandem_Repeat 376862 377817 1359 + . . scaffold914 GLEAN mRNA 377852 377891 0.989218 - . ID=CGI_10018889; scaffold914 TRF Tandem_Repeat 377852 377891 62 + . . scaffold914 GLEAN mRNA 386960 387151 0.969071 - . ID=CGI_10018890; scaffold914 WUBlastX LINE_CR1 386960 387151 70 + . . scaffold914 GLEAN mRNA 387077 387169 0.969071 - . ID=CGI_10018890; scaffold914 WUBlastX LINE_L2 387077 387169 22 + . . scaffold914 GLEAN mRNA 384548 385525 0.969071 - . ID=CGI_10018890; scaffold914 WUBlastX LINE_CR1 384548 385525 406 + . . scaffold914 GLEAN mRNA 386245 386994 0.969071 - . ID=CGI_10018890; scaffold914 WUBlastX LINE_CR1 386245 386994 625 + . . scaffold914 GLEAN mRNA 384308 385525 0.969071 - . ID=CGI_10018890; scaffold914 WUBlastX LINE_L2 384308 385525 57 + . . scaffold914 GLEAN mRNA 395073 395129 0.855447 + . ID=CGI_10018891; scaffold914 TRF Tandem_Repeat 395073 395129 114 + . . scaffold914 GLEAN mRNA 423662 424125 0.959662 - . ID=CGI_10018892; scaffold914 TRF Tandem_Repeat 423662 424125 423 + . . scaffold914 GLEAN mRNA 423800 423913 0.959662 - . ID=CGI_10018892; scaffold914 TRF Tandem_Repeat 423800 423913 74 + . . scaffold914 GLEAN mRNA 423693 424125 0.959662 - . ID=CGI_10018892; scaffold914 TRF Tandem_Repeat 423693 424125 372 + . . scaffold914 GLEAN mRNA 424581 424627 0.959662 - . ID=CGI_10018892; scaffold914 TRF Tandem_Repeat 424581 424627 94 + . . scaffold914 GLEAN mRNA 450572 450941 0.999331 + . ID=CGI_10018893; scaffold914 TRF Tandem_Repeat 450572 450941 641 + . . scaffold914 GLEAN mRNA 454891 454935 0.999331 + . ID=CGI_10018893; scaffold914 TRF Tandem_Repeat 454891 454935 90 + . . scaffold914 GLEAN mRNA 462578 463489 0.999331 + . ID=CGI_10018893; scaffold914 TRF Tandem_Repeat 462578 463489 1488 + . . scaffold914 GLEAN mRNA 463662 463714 0.999331 + . ID=CGI_10018893; scaffold914 TRF Tandem_Repeat 463662 463714 74 + . . scaffold914 GLEAN mRNA 537475 537556 0.999675 - . ID=CGI_10018900; scaffold914 TRF Tandem_Repeat 537475 537556 56 + . . scaffold914 GLEAN mRNA 537588 537662 0.999675 - . ID=CGI_10018900; scaffold914 TRF Tandem_Repeat 537588 537662 51 + . . scaffold914 GLEAN mRNA 540444 540488 0.999675 - . ID=CGI_10018900; scaffold914 TRF Tandem_Repeat 540444 540488 90 + . . scaffold914 GLEAN mRNA 541394 542159 0.999675 - . ID=CGI_10018900; scaffold914 TRF Tandem_Repeat 541394 542159 998 + . . scaffold914 GLEAN mRNA 558633 558669 0.736428 + . ID=CGI_10018902; scaffold914 TRF Tandem_Repeat 558633 558669 56 + . . scaffold914 GLEAN mRNA 561475 561552 0.736428 + . ID=CGI_10018902; scaffold914 TRF Tandem_Repeat 561475 561552 149 + . . scaffold914 GLEAN mRNA 563525 563820 0.736428 + . ID=CGI_10018902; scaffold914 TRF Tandem_Repeat 563525 563820 457 + . . scaffold914 GLEAN mRNA 572975 573190 0.999997 + . ID=CGI_10018903; scaffold914 WUBlastX LINE_RTE-X 572975 573190 40 - . . scaffold42 GLEAN mRNA 80747 81298 0.592597 - . ID=CGI_10018905; scaffold42 WUBlastX LTR_Ngaro 80747 81298 130 - . . scaffold42 GLEAN mRNA 78976 79422 0.592597 - . ID=CGI_10018905; scaffold42 WUBlastX LTR_Ngaro 78976 79422 200 - . . scaffold42 GLEAN mRNA 80430 80753 0.592597 - . ID=CGI_10018905; scaffold42 WUBlastX LTR_Ngaro 80430 80753 32 - . . scaffold42 GLEAN mRNA 79054 79422 0.592597 - . ID=CGI_10018905; scaffold42 WUBlastX LTR_Ngaro 79054 79422 234 - . . scaffold42 GLEAN mRNA 79446 80180 0.592597 - . ID=CGI_10018905; scaffold42 WUBlastX LTR_Ngaro 79446 80180 481 - . . scaffold42 GLEAN mRNA 80174 80482 0.592597 - . ID=CGI_10018905; scaffold42 WUBlastX LTR_Ngaro 80174 80482 82 - . . scaffold42 GLEAN mRNA 78946 79053 0.592597 - . ID=CGI_10018905; scaffold42 WUBlastX LTR_Ngaro 78946 79053 59 - . . scaffold42 GLEAN mRNA 81694 82354 0.592597 - . ID=CGI_10018905; scaffold42 TRF Tandem_Repeat 81694 82354 1035 + . . scaffold42 GLEAN mRNA 132284 132343 1 - . ID=CGI_10018908; scaffold42 TRF Tandem_Repeat 132284 132343 111 + . . scaffold42 GLEAN mRNA 132780 133201 1 - . ID=CGI_10018908; scaffold42 TRF Tandem_Repeat 132780 133201 470 + . . scaffold42 GLEAN mRNA 149491 150292 0.994166 + . ID=CGI_10018909; scaffold42 TRF Tandem_Repeat 149491 150292 1145 + . . scaffold42 GLEAN mRNA 150552 151169 0.994166 + . ID=CGI_10018909; scaffold42 TRF Tandem_Repeat 150552 151169 701 + . . scaffold42 GLEAN mRNA 170755 171168 0.99315 + . ID=CGI_10018910; scaffold42 TRF Tandem_Repeat 170755 171168 600 + . . scaffold42 GLEAN mRNA 171727 172252 0.99315 + . ID=CGI_10018910; scaffold42 TRF Tandem_Repeat 171727 172252 456 + . . scaffold42 GLEAN mRNA 207724 207754 0.545569 + . ID=CGI_10018912; scaffold42 TRF Tandem_Repeat 207724 207754 62 + . . scaffold42 GLEAN mRNA 206806 206868 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_L2 206806 206868 20 + . . scaffold42 GLEAN mRNA 206167 206547 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_L2 206167 206547 182 + . . scaffold42 GLEAN mRNA 206552 206770 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_L2 206552 206770 142 + . . scaffold42 GLEAN mRNA 206841 207317 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_L2 206841 207317 157 + . . scaffold42 GLEAN mRNA 206555 206830 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_CR1-L2 206555 206830 107 + . . scaffold42 GLEAN mRNA 205807 206178 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_RTE-X 205807 206178 51 - . . scaffold42 GLEAN mRNA 205236 205343 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_L2 205236 205343 37 + . . scaffold42 GLEAN mRNA 205233 205313 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_CR1 205233 205313 46 + . . scaffold42 GLEAN mRNA 205173 205307 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_CR1 205173 205307 31 + . . scaffold42 GLEAN mRNA 205631 205819 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_RTE-X 205631 205819 91 - . . scaffold42 GLEAN mRNA 205224 205319 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_CR1 205224 205319 37 + . . scaffold42 GLEAN mRNA 215910 215947 0.545569 + . ID=CGI_10018912; scaffold42 TRF Tandem_Repeat 215910 215947 76 + . . scaffold42 GLEAN mRNA 221517 221568 0.545569 + . ID=CGI_10018912; scaffold42 TRF Tandem_Repeat 221517 221568 81 + . . scaffold42 GLEAN mRNA 221514 221563 0.545569 + . ID=CGI_10018912; scaffold42 TRF Tandem_Repeat 221514 221563 57 + . . scaffold42 GLEAN mRNA 285043 285078 0.828294 - . ID=CGI_10018913; scaffold42 TRF Tandem_Repeat 285043 285078 54 + . . scaffold42 GLEAN mRNA 367098 367319 0.99869 + . ID=CGI_10018915; scaffold42 WUBlastX DNA_Kolobok 367098 367319 41 + . . scaffold42 GLEAN mRNA 367449 367706 0.99869 + . ID=CGI_10018915; scaffold42 WUBlastX DNA_Kolobok 367449 367706 46 + . . scaffold42 GLEAN mRNA 367455 367664 0.99869 + . ID=CGI_10018915; scaffold42 WUBlastX DNA_Kolobok 367455 367664 87 + . . scaffold42 GLEAN mRNA 504223 504719 0.556118 + . ID=CGI_10018922; scaffold42 TRF Tandem_Repeat 504223 504719 552 + . . scaffold42 GLEAN mRNA 504362 504598 0.556118 + . ID=CGI_10018922; scaffold42 TRF Tandem_Repeat 504362 504598 186 + . . scaffold42 GLEAN mRNA 517232 517783 0.999945 - . ID=CGI_10018924; scaffold42 TRF Tandem_Repeat 517232 517783 225 + . . scaffold42 GLEAN mRNA 517232 517767 0.999945 - . ID=CGI_10018924; scaffold42 TRF Tandem_Repeat 517232 517767 290 + . . scaffold42 GLEAN mRNA 517409 517782 0.999945 - . ID=CGI_10018924; scaffold42 TRF Tandem_Repeat 517409 517782 316 + . . scaffold42 GLEAN mRNA 517510 517783 0.999945 - . ID=CGI_10018924; scaffold42 TRF Tandem_Repeat 517510 517783 299 + . . scaffold42 GLEAN mRNA 521252 521296 0.999945 - . ID=CGI_10018924; scaffold42 TRF Tandem_Repeat 521252 521296 90 + . . scaffold42 GLEAN mRNA 527731 527871 0.964037 - . ID=CGI_10018925; scaffold42 TRF Tandem_Repeat 527731 527871 103 + . . scaffold42 GLEAN mRNA 540351 540467 0.964037 - . ID=CGI_10018925; scaffold42 WUBlastX LINE_Penelope 540351 540467 31 + . . scaffold42 GLEAN mRNA 540530 540874 0.964037 - . ID=CGI_10018925; scaffold42 WUBlastX LINE_Penelope 540530 540874 20 + . . scaffold1262 GLEAN mRNA 68407 68455 1 - . ID=CGI_10018928; scaffold1262 TRF Tandem_Repeat 68407 68455 71 + . . scaffold1262 GLEAN mRNA 68887 68936 1 - . ID=CGI_10018928; scaffold1262 TRF Tandem_Repeat 68887 68936 66 + . . scaffold1262 GLEAN mRNA 72242 72283 1 - . ID=CGI_10018928; scaffold1262 TRF Tandem_Repeat 72242 72283 84 + . . scaffold1262 GLEAN mRNA 69957 70133 1 - . ID=CGI_10018928; scaffold1262 WUBlastX DNA_Sola 69957 70133 112 + . . scaffold1262 GLEAN mRNA 147643 148801 0.881343 - . ID=CGI_10018933; scaffold1262 TRF Tandem_Repeat 147643 148801 1133 + . . scaffold1262 GLEAN mRNA 147643 148801 0.999987 + . ID=CGI_10018934; scaffold1262 TRF Tandem_Repeat 147643 148801 1133 + . . scaffold1262 GLEAN mRNA 241341 241365 0.999676 + . ID=CGI_10018941; scaffold1262 TRF Tandem_Repeat 241341 241365 50 + . . scaffold1262 GLEAN mRNA 262621 262691 0.888426 - . ID=CGI_10018942; scaffold1262 TRF Tandem_Repeat 262621 262691 142 + . . scaffold1262 GLEAN mRNA 263215 263245 0.888426 - . ID=CGI_10018942; scaffold1262 TRF Tandem_Repeat 263215 263245 62 + . . scaffold1262 GLEAN mRNA 274029 274076 0.888426 - . ID=CGI_10018942; scaffold1262 TRF Tandem_Repeat 274029 274076 60 + . . scaffold1262 GLEAN mRNA 302610 302639 0.786182 - . ID=CGI_10018943; scaffold1262 TRF Tandem_Repeat 302610 302639 51 + . . scaffold1262 GLEAN mRNA 303222 303265 0.786182 - . ID=CGI_10018943; scaffold1262 TRF Tandem_Repeat 303222 303265 88 + . . scaffold1262 GLEAN mRNA 307221 307280 0.786182 - . ID=CGI_10018943; scaffold1262 TRF Tandem_Repeat 307221 307280 104 + . . scaffold1262 GLEAN mRNA 360733 360781 0.990769 - . ID=CGI_10018945; scaffold1262 TRF Tandem_Repeat 360733 360781 98 + . . scaffold1262 GLEAN mRNA 366838 366870 0.990769 - . ID=CGI_10018945; scaffold1262 TRF Tandem_Repeat 366838 366870 66 + . . scaffold1262 GLEAN mRNA 366838 366870 0.777165 + . ID=CGI_10018946; scaffold1262 TRF Tandem_Repeat 366838 366870 66 + . . scaffold1262 GLEAN mRNA 382780 382995 0.801532 - . ID=CGI_10018947; scaffold1262 TRF Tandem_Repeat 382780 382995 360 + . . scaffold1262 GLEAN mRNA 378165 378323 0.801532 - . ID=CGI_10018947; scaffold1262 WUBlastX LTR_Gypsy 378165 378323 75 + . . scaffold1262 GLEAN mRNA 392073 392368 1 + . ID=CGI_10018948; scaffold1262 TRF Tandem_Repeat 392073 392368 385 + . . scaffold1262 GLEAN mRNA 392073 392368 1 + . ID=CGI_10018948; scaffold1262 TRF Tandem_Repeat 392073 392368 538 + . . scaffold1262 GLEAN mRNA 407827 407921 0.917228 - . ID=CGI_10018950; scaffold1262 TRF Tandem_Repeat 407827 407921 63 + . . scaffold1262 GLEAN mRNA 407828 407921 0.917228 - . ID=CGI_10018950; scaffold1262 TRF Tandem_Repeat 407828 407921 82 + . . scaffold1262 GLEAN mRNA 407870 407909 0.917228 - . ID=CGI_10018950; scaffold1262 TRF Tandem_Repeat 407870 407909 59 + . . scaffold1262 GLEAN mRNA 426512 426577 0.803191 + . ID=CGI_10018952; scaffold1262 TRF Tandem_Repeat 426512 426577 77 + . . scaffold1262 GLEAN mRNA 426512 426597 0.803191 + . ID=CGI_10018952; scaffold1262 TRF Tandem_Repeat 426512 426597 61 + . . scaffold1262 GLEAN mRNA 468937 468986 0.994341 + . ID=CGI_10018954; scaffold1262 TRF Tandem_Repeat 468937 468986 100 + . . scaffold1262 GLEAN mRNA 515211 515281 0.999351 - . ID=CGI_10018956; scaffold1262 TRF Tandem_Repeat 515211 515281 124 + . . scaffold1262 GLEAN mRNA 515396 515430 0.999351 - . ID=CGI_10018956; scaffold1262 TRF Tandem_Repeat 515396 515430 70 + . . scaffold1262 GLEAN mRNA 515544 515578 0.999351 - . ID=CGI_10018956; scaffold1262 TRF Tandem_Repeat 515544 515578 70 + . . scaffold1262 GLEAN mRNA 515692 515726 0.999351 - . ID=CGI_10018956; scaffold1262 TRF Tandem_Repeat 515692 515726 70 + . . scaffold1262 GLEAN mRNA 515085 515174 0.999351 - . ID=CGI_10018956; scaffold1262 WUBlastX DNA_Kolobok-IS4 515085 515174 39 - . . scaffold1262 GLEAN mRNA 515844 515981 0.999351 - . ID=CGI_10018956; scaffold1262 WUBlastX DNA_Kolobok-IS4 515844 515981 40 - . . scaffold1262 GLEAN mRNA 513637 514635 0.999351 - . ID=CGI_10018956; scaffold1262 WUBlastX DNA_IS4EU 513637 514635 541 - . . scaffold1262 GLEAN mRNA 511675 511815 0.999351 - . ID=CGI_10018956; scaffold1262 WUBlastX DNA_IS4EU 511675 511815 29 + . . scaffold1262 GLEAN mRNA 512042 512293 0.999351 - . ID=CGI_10018956; scaffold1262 WUBlastX DNA_IS4EU 512042 512293 45 + . . scaffold1262 GLEAN mRNA 511476 511676 0.999351 - . ID=CGI_10018956; scaffold1262 WUBlastX DNA_Kolobok-IS4 511476 511676 64 + . . scaffold1262 GLEAN mRNA 512090 513232 0.999351 - . ID=CGI_10018956; scaffold1262 WUBlastX DNA_Kolobok-IS4 512090 513232 275 + . . scaffold1262 GLEAN mRNA 511314 511739 0.999351 - . ID=CGI_10018956; scaffold1262 WUBlastX DNA_IS4EU 511314 511739 52 + . . scaffold1262 GLEAN mRNA 534285 534310 0.647552 - . ID=CGI_10018958; scaffold1262 TRF Tandem_Repeat 534285 534310 52 + . . scaffold1262 GLEAN mRNA 539198 539263 1 + . ID=CGI_10018959; scaffold1262 TRF Tandem_Repeat 539198 539263 89 + . . scaffold1262 GLEAN mRNA 538928 539110 1 + . ID=CGI_10018959; scaffold1262 WUBlastX LTR_Gypsy 538928 539110 50 + . . scaffold658 GLEAN mRNA 33372 34204 0.343104 + . ID=CGI_10018962; scaffold658 TRF Tandem_Repeat 33372 34204 1108 + . . scaffold658 GLEAN mRNA 99368 99395 0.997281 - . ID=CGI_10018964; scaffold658 TRF Tandem_Repeat 99368 99395 56 + . . scaffold658 GLEAN mRNA 106059 107309 0.997281 - . ID=CGI_10018964; scaffold658 WUBlastX DNA_TcMar-Tc2 106059 107309 1014 + . . scaffold658 GLEAN mRNA 123455 124256 0.997281 - . ID=CGI_10018964; scaffold658 TRF Tandem_Repeat 123455 124256 913 + . . scaffold658 GLEAN mRNA 140559 140598 0.988841 - . ID=CGI_10018966; scaffold658 TRF Tandem_Repeat 140559 140598 62 + . . scaffold658 GLEAN mRNA 171605 171677 0.356987 - . ID=CGI_10018967; scaffold658 TRF Tandem_Repeat 171605 171677 130 + . . scaffold658 GLEAN mRNA 171675 171713 0.356987 - . ID=CGI_10018967; scaffold658 TRF Tandem_Repeat 171675 171713 78 + . . scaffold658 GLEAN mRNA 232459 232632 0.37443 + . ID=CGI_10018968; scaffold658 WUBlastX LINE_RTE-BovB 232459 232632 181 - . . scaffold658 GLEAN mRNA 232486 232662 0.37443 + . ID=CGI_10018968; scaffold658 WUBlastX LINE_RTE-BovB 232486 232662 76 - . . scaffold658 GLEAN mRNA 307483 307538 0.512593 + . ID=CGI_10018969; scaffold658 TRF Tandem_Repeat 307483 307538 103 + . . scaffold658 GLEAN mRNA 405602 405849 0.553324 + . ID=CGI_10018972; scaffold658 TRF Tandem_Repeat 405602 405849 55 + . . scaffold658 GLEAN mRNA 439955 440515 1 - . ID=CGI_10018975; scaffold658 WUBlastX LINE_RTE-X 439955 440599 208 - . . scaffold269 GLEAN mRNA 31211 31262 0.980085 + . ID=CGI_10018984; scaffold269 TRF Tandem_Repeat 31211 31262 104 + . . scaffold269 GLEAN mRNA 32259 32293 0.980085 + . ID=CGI_10018984; scaffold269 TRF Tandem_Repeat 32259 32293 70 + . . scaffold269 GLEAN mRNA 36429 37526 0.980085 + . ID=CGI_10018984; scaffold269 TRF Tandem_Repeat 36429 37526 1601 + . . scaffold269 GLEAN mRNA 62901 62930 1 - . ID=CGI_10018985; scaffold269 TRF Tandem_Repeat 62901 62930 51 + . . scaffold269 GLEAN mRNA 63456 63506 1 - . ID=CGI_10018985; scaffold269 TRF Tandem_Repeat 63456 63506 102 + . . scaffold269 GLEAN mRNA 70283 70784 0.544852 - . ID=CGI_10018986; scaffold269 TRF Tandem_Repeat 70283 70784 491 + . . scaffold269 GLEAN mRNA 91900 91994 0.999986 - . ID=CGI_10018988; scaffold269 TRF Tandem_Repeat 91900 91994 118 + . . scaffold269 GLEAN mRNA 92043 92141 0.999986 - . ID=CGI_10018988; scaffold269 TRF Tandem_Repeat 92043 92141 182 + . . scaffold269 GLEAN mRNA 99259 99349 0.593012 - . ID=CGI_10018989; scaffold269 TRF Tandem_Repeat 99259 99349 173 + . . scaffold269 GLEAN mRNA 102829 102905 0.593012 - . ID=CGI_10018989; scaffold269 TRF Tandem_Repeat 102829 102905 154 + . . scaffold269 GLEAN mRNA 110697 110730 0.709697 + . ID=CGI_10018990; scaffold269 TRF Tandem_Repeat 110697 110730 59 + . . scaffold269 GLEAN mRNA 111608 111659 0.709697 + . ID=CGI_10018990; scaffold269 TRF Tandem_Repeat 111608 111659 104 + . . scaffold269 GLEAN mRNA 117385 117467 0.709697 + . ID=CGI_10018990; scaffold269 TRF Tandem_Repeat 117385 117467 139 + . . scaffold269 GLEAN mRNA 120078 120131 0.709697 + . ID=CGI_10018990; scaffold269 TRF Tandem_Repeat 120078 120131 74 + . . scaffold269 GLEAN mRNA 121355 123931 0.709697 + . ID=CGI_10018990; scaffold269 TRF Tandem_Repeat 121355 123931 2551 + . . scaffold269 GLEAN mRNA 130781 130850 0.709697 + . ID=CGI_10018990; scaffold269 TRF Tandem_Repeat 130781 130850 51 + . . scaffold269 GLEAN mRNA 187379 187422 0.960589 + . ID=CGI_10018995; scaffold269 TRF Tandem_Repeat 187379 187422 88 + . . scaffold269 GLEAN mRNA 199268 199366 0.999993 + . ID=CGI_10018996; scaffold269 WUBlastX LTR_Ngaro 199268 199366 59 - . . scaffold269 GLEAN mRNA 197738 198148 0.999993 + . ID=CGI_10018996; scaffold269 WUBlastX LINE_CR1 197738 198148 81 - . . scaffold269 GLEAN mRNA 197780 198103 0.999993 + . ID=CGI_10018996; scaffold269 WUBlastX LINE_RTE-X 197780 198103 96 - . . scaffold269 GLEAN mRNA 198354 199337 0.999993 + . ID=CGI_10018996; scaffold269 WUBlastX LTR_Ngaro 198354 199337 466 - . . scaffold269 GLEAN mRNA 261378 261479 0.999676 - . ID=CGI_10018997; scaffold269 TRF Tandem_Repeat 261378 261479 100 + . . scaffold269 GLEAN mRNA 264287 264311 0.999676 - . ID=CGI_10018997; scaffold269 TRF Tandem_Repeat 264287 264311 50 + . . scaffold269 GLEAN mRNA 264525 265340 0.999676 - . ID=CGI_10018997; scaffold269 TRF Tandem_Repeat 264525 265340 811 + . . scaffold269 GLEAN mRNA 264525 265340 0.999676 - . ID=CGI_10018997; scaffold269 TRF Tandem_Repeat 264525 265340 882 + . . scaffold269 GLEAN mRNA 264905 265340 0.999676 - . ID=CGI_10018997; scaffold269 TRF Tandem_Repeat 264905 265340 604 + . . scaffold269 GLEAN mRNA 272565 272600 0.999676 - . ID=CGI_10018997; scaffold269 TRF Tandem_Repeat 272565 272600 54 + . . scaffold269 GLEAN mRNA 285262 285417 0.999676 - . ID=CGI_10018997; scaffold269 TRF Tandem_Repeat 285262 285417 118 + . . scaffold269 GLEAN mRNA 292783 292822 0.703169 - . ID=CGI_10018998; scaffold269 TRF Tandem_Repeat 292783 292822 80 + . . scaffold269 GLEAN mRNA 352513 352547 0.796804 - . ID=CGI_10019002; scaffold269 TRF Tandem_Repeat 352513 352547 70 + . . scaffold269 GLEAN mRNA 370286 370357 0.796804 - . ID=CGI_10019002; scaffold269 TRF Tandem_Repeat 370286 370357 128 + . . scaffold269 GLEAN mRNA 373399 373426 0.796804 - . ID=CGI_10019002; scaffold269 TRF Tandem_Repeat 373399 373426 56 + . . scaffold269 GLEAN mRNA 426455 426515 0.541124 - . ID=CGI_10019005; scaffold269 TRF Tandem_Repeat 426455 426515 122 + . . scaffold269 GLEAN mRNA 438456 438499 0.269378 - . ID=CGI_10019006; scaffold269 TRF Tandem_Repeat 438456 438499 61 + . . scaffold269 GLEAN mRNA 436661 436825 0.269378 - . ID=CGI_10019006; scaffold269 WUBlastX LTR_Gypsy 436661 436825 42 - . . scaffold269 GLEAN mRNA 445728 445767 0.269378 - . ID=CGI_10019006; scaffold269 TRF Tandem_Repeat 445728 445767 73 + . . scaffold269 GLEAN mRNA 447797 447842 0.269378 - . ID=CGI_10019006; scaffold269 TRF Tandem_Repeat 447797 447842 92 + . . scaffold269 GLEAN mRNA 454533 454660 0.269378 - . ID=CGI_10019006; scaffold269 TRF Tandem_Repeat 454533 454660 64 + . . scaffold269 GLEAN mRNA 454531 454663 0.269378 - . ID=CGI_10019006; scaffold269 TRF Tandem_Repeat 454531 454663 53 + . . scaffold269 GLEAN mRNA 454573 454663 0.269378 - . ID=CGI_10019006; scaffold269 TRF Tandem_Repeat 454573 454663 60 + . . scaffold269 GLEAN mRNA 454531 454661 0.269378 - . ID=CGI_10019006; scaffold269 TRF Tandem_Repeat 454531 454661 59 + . . scaffold269 GLEAN mRNA 458128 458166 0.269378 - . ID=CGI_10019006; scaffold269 TRF Tandem_Repeat 458128 458166 78 + . . scaffold269 GLEAN mRNA 456031 456510 0.269378 - . ID=CGI_10019006; scaffold269 WUBlastX LINE_RTE-X 456031 456510 71 + . . scaffold269 GLEAN mRNA 455669 455890 0.269378 - . ID=CGI_10019006; scaffold269 WUBlastX LINE_RTE-X 455669 455890 132 + . . scaffold269 GLEAN mRNA 455924 456049 0.269378 - . ID=CGI_10019006; scaffold269 WUBlastX LINE_RTE-X 455924 456049 81 - . . scaffold269 GLEAN mRNA 455977 456306 0.269378 - . ID=CGI_10019006; scaffold269 WUBlastX LINE_RTE-X 455977 456306 82 + . . scaffold269 GLEAN mRNA 456067 456309 0.269378 - . ID=CGI_10019006; scaffold269 WUBlastX LINE_RTE-X 456067 456309 110 + . . scaffold269 GLEAN mRNA 551799 552355 0.998034 - . ID=CGI_10019009; scaffold269 TRF Tandem_Repeat 551799 552355 347 + . . scaffold269 GLEAN mRNA 551792 552355 0.998034 - . ID=CGI_10019009; scaffold269 TRF Tandem_Repeat 551792 552355 805 + . . scaffold269 GLEAN mRNA 551792 552355 0.998034 - . ID=CGI_10019009; scaffold269 TRF Tandem_Repeat 551792 552355 805 + . . scaffold269 GLEAN mRNA 555833 555877 0.998034 - . ID=CGI_10019009; scaffold269 TRF Tandem_Repeat 555833 555877 90 + . . scaffold269 GLEAN mRNA 561328 561388 0.998034 - . ID=CGI_10019009; scaffold269 TRF Tandem_Repeat 561328 561388 81 + . . scaffold808 GLEAN mRNA 8872 9002 0.999138 + . ID=CGI_10019010; scaffold808 TRF Tandem_Repeat 8872 9002 181 + . . scaffold808 GLEAN mRNA 69630 69695 0.639178 - . ID=CGI_10019013; scaffold808 TRF Tandem_Repeat 69630 69695 51 + . . scaffold808 GLEAN mRNA 69591 69703 0.639178 - . ID=CGI_10019013; scaffold808 TRF Tandem_Repeat 69591 69703 90 + . . scaffold808 GLEAN mRNA 69587 69683 0.639178 - . ID=CGI_10019013; scaffold808 TRF Tandem_Repeat 69587 69683 139 + . . scaffold808 GLEAN mRNA 89422 90197 1 + . ID=CGI_10019014; scaffold808 TRF Tandem_Repeat 89422 90197 1144 + . . scaffold808 GLEAN mRNA 163695 163721 0.494982 - . ID=CGI_10019018; scaffold808 TRF Tandem_Repeat 163695 163721 54 + . . scaffold808 GLEAN mRNA 170682 171341 0.494982 - . ID=CGI_10019018; scaffold808 WUBlastX LTR_DIRS 170682 171341 284 + . . scaffold808 GLEAN mRNA 171279 173324 0.494982 - . ID=CGI_10019018; scaffold808 WUBlastX LTR_DIRS 171279 173324 1263 + . . scaffold808 GLEAN mRNA 183522 183558 0.494982 - . ID=CGI_10019018; scaffold808 TRF Tandem_Repeat 183522 183558 56 + . . scaffold808 GLEAN mRNA 185233 185604 0.494982 - . ID=CGI_10019018; scaffold808 WUBlastX LINE_L1-Tx1 185233 185604 96 - . . scaffold808 GLEAN mRNA 185609 188149 0.494982 - . ID=CGI_10019018; scaffold808 WUBlastX LINE_L1-Tx1 185609 188149 1187 - . . scaffold808 GLEAN mRNA 188722 188982 0.494982 - . ID=CGI_10019018; scaffold808 WUBlastX LINE_L1-Tx1 188722 188982 160 - . . scaffold808 GLEAN mRNA 185603 188719 0.494982 - . ID=CGI_10019018; scaffold808 WUBlastX LINE_L1 185603 188719 1048 - . . scaffold808 GLEAN mRNA 354404 354607 0.676195 + . ID=CGI_10019028; scaffold808 TRF Tandem_Repeat 354404 354607 261 + . . scaffold808 GLEAN mRNA 365924 365977 0.979713 - . ID=CGI_10019029; scaffold808 TRF Tandem_Repeat 365924 365977 57 + . . scaffold808 GLEAN mRNA 380735 380779 0.724584 - . ID=CGI_10019030; scaffold808 TRF Tandem_Repeat 380735 380779 54 + . . scaffold808 GLEAN mRNA 384730 384784 0.813859 + . ID=CGI_10019031; scaffold808 TRF Tandem_Repeat 384730 384784 110 + . . scaffold808 GLEAN mRNA 390206 390255 0.813859 + . ID=CGI_10019031; scaffold808 TRF Tandem_Repeat 390206 390255 91 + . . scaffold808 GLEAN mRNA 398766 398811 0.813859 + . ID=CGI_10019031; scaffold808 TRF Tandem_Repeat 398766 398811 92 + . . scaffold808 GLEAN mRNA 401433 401518 0.813859 + . ID=CGI_10019031; scaffold808 TRF Tandem_Repeat 401433 401518 172 + . . scaffold808 GLEAN mRNA 417586 417650 0.813859 + . ID=CGI_10019031; scaffold808 TRF Tandem_Repeat 417586 417650 112 + . . scaffold808 GLEAN mRNA 427535 427914 0.813859 + . ID=CGI_10019031; scaffold808 TRF Tandem_Repeat 427535 427914 349 + . . scaffold808 GLEAN mRNA 427562 427824 0.813859 + . ID=CGI_10019031; scaffold808 TRF Tandem_Repeat 427562 427824 226 + . . scaffold808 GLEAN mRNA 427655 427775 0.813859 + . ID=CGI_10019031; scaffold808 TRF Tandem_Repeat 427655 427775 100 + . . scaffold808 GLEAN mRNA 427535 427914 0.813859 + . ID=CGI_10019031; scaffold808 TRF Tandem_Repeat 427535 427914 375 + . . scaffold808 GLEAN mRNA 409336 409667 0.813859 + . ID=CGI_10019031; scaffold808 TRF Tandem_Repeat 409336 409667 431 + . . scaffold808 GLEAN mRNA 471947 471995 0.998274 + . ID=CGI_10019032; scaffold808 TRF Tandem_Repeat 471947 471995 98 + . . scaffold808 GLEAN mRNA 481644 481695 0.998274 + . ID=CGI_10019032; scaffold808 TRF Tandem_Repeat 481644 481695 104 + . . scaffold808 GLEAN mRNA 529127 529711 0.999514 + . ID=CGI_10019037; scaffold808 TRF Tandem_Repeat 529009 529711 955 + . . scaffold808 GLEAN mRNA 532165 532667 1 - . ID=CGI_10019038; scaffold808 TRF Tandem_Repeat 532165 532667 663 + . . scaffold808 GLEAN mRNA 533598 533826 1 - . ID=CGI_10019038; scaffold808 TRF Tandem_Repeat 533598 533826 449 + . . scaffold808 GLEAN mRNA 548704 548754 0.613406 + . ID=CGI_10019039; scaffold808 TRF Tandem_Repeat 548704 548754 102 + . . scaffold808 GLEAN mRNA 572834 572904 1 - . ID=CGI_10019041; scaffold808 TRF Tandem_Repeat 572834 572904 92 + . . scaffold1249 GLEAN mRNA 2370 2415 0.762279 - . ID=CGI_10019043; scaffold1249 TRF Tandem_Repeat 2370 2415 83 + . . scaffold1249 GLEAN mRNA 4391 4430 0.762279 - . ID=CGI_10019043; scaffold1249 TRF Tandem_Repeat 4391 4430 80 + . . scaffold1249 GLEAN mRNA 55625 55670 0.999664 - . ID=CGI_10019045; scaffold1249 TRF Tandem_Repeat 55625 55670 92 + . . scaffold1249 GLEAN mRNA 62827 62892 0.999664 - . ID=CGI_10019045; scaffold1249 TRF Tandem_Repeat 62827 62892 123 + . . scaffold1249 GLEAN mRNA 62827 62892 0.6547 + . ID=CGI_10019046; scaffold1249 TRF Tandem_Repeat 62827 62892 123 + . . scaffold1249 GLEAN mRNA 74764 74812 0.6547 + . ID=CGI_10019046; scaffold1249 TRF Tandem_Repeat 74764 74812 98 + . . scaffold1249 GLEAN mRNA 90234 90269 0.821927 - . ID=CGI_10019047; scaffold1249 TRF Tandem_Repeat 90234 90269 72 + . . scaffold1249 GLEAN mRNA 101488 101548 0.82183 - . ID=CGI_10019048; scaffold1249 TRF Tandem_Repeat 101488 101548 52 + . . scaffold1249 GLEAN mRNA 105407 105462 0.82183 - . ID=CGI_10019048; scaffold1249 TRF Tandem_Repeat 105407 105462 112 + . . scaffold1249 GLEAN mRNA 126015 126073 0.558382 + . ID=CGI_10019051; scaffold1249 TRF Tandem_Repeat 126015 126073 118 + . . scaffold1249 GLEAN mRNA 128541 129923 0.558382 + . ID=CGI_10019051; scaffold1249 WUBlastX LINE_RTE-X 128541 129923 911 + . . scaffold1249 GLEAN mRNA 129898 130281 0.558382 + . ID=CGI_10019051; scaffold1249 WUBlastX LINE_RTE-X 129898 130281 182 + . . scaffold1249 GLEAN mRNA 130036 130407 0.558382 + . ID=CGI_10019051; scaffold1249 WUBlastX LINE_RTE-X 130036 130407 100 + . . scaffold1249 GLEAN mRNA 128253 129914 0.558382 + . ID=CGI_10019051; scaffold1249 WUBlastX LINE_RTE-X 128253 129914 719 + . . scaffold1249 GLEAN mRNA 129970 130338 0.558382 + . ID=CGI_10019051; scaffold1249 WUBlastX LINE_RTE-X 129970 130338 106 + . . scaffold1249 GLEAN mRNA 127868 127942 0.558382 + . ID=CGI_10019051; scaffold1249 WUBlastX LINE_DRE 127868 127942 23 + . . scaffold1249 GLEAN mRNA 128571 130214 0.558382 + . ID=CGI_10019051; scaffold1249 WUBlastX LINE_RTE-X 128571 130214 454 + . . scaffold1249 GLEAN mRNA 207088 207208 1 - . ID=CGI_10019056; scaffold1249 TRF Tandem_Repeat 207088 207208 161 + . . scaffold1249 GLEAN mRNA 207732 207797 1 - . ID=CGI_10019056; scaffold1249 TRF Tandem_Repeat 207732 207797 132 + . . scaffold1249 GLEAN mRNA 208915 208981 1 - . ID=CGI_10019056; scaffold1249 TRF Tandem_Repeat 208915 208981 98 + . . scaffold1249 GLEAN mRNA 254780 255007 0.545459 - . ID=CGI_10019058; scaffold1249 TRF Tandem_Repeat 254780 255007 293 + . . scaffold1249 GLEAN mRNA 254783 254933 0.545459 - . ID=CGI_10019058; scaffold1249 TRF Tandem_Repeat 254783 254933 59 + . . scaffold1249 GLEAN mRNA 254780 255049 0.545459 - . ID=CGI_10019058; scaffold1249 TRF Tandem_Repeat 254780 255049 154 + . . scaffold1249 GLEAN mRNA 261492 261569 0.545459 - . ID=CGI_10019058; scaffold1249 WUBlastX LINE_L2 261492 261569 22 - . . scaffold1249 GLEAN mRNA 259651 260139 0.545459 - . ID=CGI_10019058; scaffold1249 WUBlastX LINE_CR1-L2 259651 260139 22 - . . scaffold1249 GLEAN mRNA 260138 260662 0.545459 - . ID=CGI_10019058; scaffold1249 WUBlastX LINE_CR1-L2 260138 260662 249 - . . scaffold1249 GLEAN mRNA 259781 260641 0.545459 - . ID=CGI_10019058; scaffold1249 WUBlastX LINE_CR1-L2 259781 260641 198 - . . scaffold1249 GLEAN mRNA 260159 260878 0.545459 - . ID=CGI_10019058; scaffold1249 WUBlastX LINE_CR1 260159 260878 55 - . . scaffold1249 GLEAN mRNA 260900 260950 0.545459 - . ID=CGI_10019058; scaffold1249 WUBlastX LINE_L2 260900 260950 20 - . . scaffold1249 GLEAN mRNA 262137 262460 0.545459 - . ID=CGI_10019058; scaffold1249 TRF Tandem_Repeat 262137 262460 425 + . . scaffold1249 GLEAN mRNA 272171 272972 0.651916 - . ID=CGI_10019059; scaffold1249 TRF Tandem_Repeat 272171 272972 774 + . . scaffold1249 GLEAN mRNA 326195 326347 0.702384 + . ID=CGI_10019062; scaffold1249 TRF Tandem_Repeat 326195 326347 207 + . . scaffold1249 GLEAN mRNA 367529 367573 1 + . ID=CGI_10019065; scaffold1249 TRF Tandem_Repeat 367529 367573 81 + . . scaffold1249 GLEAN mRNA 386391 386477 0.812905 + . ID=CGI_10019067; scaffold1249 TRF Tandem_Repeat 386391 386477 65 + . . scaffold1249 GLEAN mRNA 419507 419565 1 + . ID=CGI_10019070; scaffold1249 TRF Tandem_Repeat 419507 419565 84 + . . scaffold1249 GLEAN mRNA 487506 487548 1 - . ID=CGI_10019075; scaffold1249 TRF Tandem_Repeat 487506 487548 86 + . . scaffold1249 GLEAN mRNA 488069 488109 1 - . ID=CGI_10019075; scaffold1249 TRF Tandem_Repeat 488069 488109 82 + . . scaffold1249 GLEAN mRNA 532766 532961 0.971957 + . ID=CGI_10019079; scaffold1249 TRF Tandem_Repeat 532766 532961 177 + . . scaffold1249 GLEAN mRNA 574140 574185 0.999999 + . ID=CGI_10019081; scaffold1249 TRF Tandem_Repeat 574140 574185 74 + . . scaffold507 GLEAN mRNA 16691 16758 0.999973 + . ID=CGI_10019082; scaffold507 TRF Tandem_Repeat 16691 16758 118 + . . scaffold507 GLEAN mRNA 31383 32070 0.563608 + . ID=CGI_10019083; scaffold507 TRF Tandem_Repeat 31383 32070 922 + . . scaffold507 GLEAN mRNA 32075 32125 0.563608 + . ID=CGI_10019083; scaffold507 TRF Tandem_Repeat 32075 32125 57 + . . scaffold507 GLEAN mRNA 29326 29385 0.563608 + . ID=CGI_10019083; scaffold507 WUBlastX DNA_Sola 29326 29385 32 + . . scaffold507 GLEAN mRNA 29739 29858 0.563608 + . ID=CGI_10019083; scaffold507 WUBlastX DNA_Sola 29739 29858 107 + . . scaffold507 GLEAN mRNA 32929 33363 0.563608 + . ID=CGI_10019083; scaffold507 TRF Tandem_Repeat 32929 33363 480 + . . scaffold507 GLEAN mRNA 38005 38184 0.563608 + . ID=CGI_10019083; scaffold507 WUBlastX LINE_L1 38005 38184 77 + . . scaffold507 GLEAN mRNA 37951 38175 0.563608 + . ID=CGI_10019083; scaffold507 WUBlastX LINE_L1 37951 38175 45 + . . scaffold507 GLEAN mRNA 37951 38259 0.563608 + . ID=CGI_10019083; scaffold507 WUBlastX LINE_L1-Tx1 37951 38259 38 + . . scaffold507 GLEAN mRNA 38244 38888 0.563608 + . ID=CGI_10019083; scaffold507 WUBlastX LINE_L1-Tx1 38244 38888 82 + . . scaffold507 GLEAN mRNA 45571 45602 0.398486 - . ID=CGI_10019084; scaffold507 TRF Tandem_Repeat 45571 45602 64 + . . scaffold507 GLEAN mRNA 42099 42575 0.398486 - . ID=CGI_10019084; scaffold507 WUBlastX LTR_Ngaro 42099 42575 169 - . . scaffold507 GLEAN mRNA 41997 42536 0.398486 - . ID=CGI_10019084; scaffold507 WUBlastX LTR_Ngaro 41997 42536 123 - . . scaffold507 GLEAN mRNA 42144 42536 0.398486 - . ID=CGI_10019084; scaffold507 WUBlastX LTR_Ngaro 42144 42536 190 - . . scaffold507 GLEAN mRNA 41925 42806 0.398486 - . ID=CGI_10019084; scaffold507 WUBlastX LTR_Ngaro 41925 42806 76 - . . scaffold507 GLEAN mRNA 64107 64172 0.398486 - . ID=CGI_10019084; scaffold507 TRF Tandem_Repeat 64107 64172 132 + . . scaffold507 GLEAN mRNA 130776 130807 0.999009 - . ID=CGI_10019088; scaffold507 TRF Tandem_Repeat 130776 130807 64 + . . scaffold507 GLEAN mRNA 179966 180055 0.999675 - . ID=CGI_10019089; scaffold507 TRF Tandem_Repeat 179966 180055 85 + . . scaffold507 GLEAN mRNA 178046 178381 0.999675 - . ID=CGI_10019089; scaffold507 WUBlastX LINE_L1-Tx1 178046 178381 171 + . . scaffold507 GLEAN mRNA 178392 178607 0.999675 - . ID=CGI_10019089; scaffold507 WUBlastX LINE_L1-Tx1 178392 178607 88 + . . scaffold507 GLEAN mRNA 178604 179119 0.999675 - . ID=CGI_10019089; scaffold507 WUBlastX LINE_L1-Tx1 178604 179119 149 + . . scaffold507 GLEAN mRNA 180866 181275 0.999675 - . ID=CGI_10019089; scaffold507 TRF Tandem_Repeat 180866 181275 354 + . . scaffold507 GLEAN mRNA 255165 255200 0.999949 - . ID=CGI_10019093; scaffold507 TRF Tandem_Repeat 255165 255200 54 + . . scaffold507 GLEAN mRNA 264413 264903 0.999949 - . ID=CGI_10019093; scaffold507 TRF Tandem_Repeat 264413 264903 582 + . . scaffold507 GLEAN mRNA 270952 271167 0.999949 - . ID=CGI_10019093; scaffold507 WUBlastX LINE_L2 270952 271167 42 + . . scaffold507 GLEAN mRNA 268984 269160 0.999949 - . ID=CGI_10019093; scaffold507 WUBlastX LINE_RTE-X 268984 269160 84 - . . scaffold507 GLEAN mRNA 271188 271373 0.999949 - . ID=CGI_10019093; scaffold507 WUBlastX LINE_CR1-L2 271188 271373 24 + . . scaffold507 GLEAN mRNA 268945 269163 0.999949 - . ID=CGI_10019093; scaffold507 WUBlastX LINE_RTE-X 268945 269163 48 - . . scaffold507 GLEAN mRNA 271176 271298 0.999949 - . ID=CGI_10019093; scaffold507 WUBlastX LINE_CR1-L2 271176 271298 26 + . . scaffold507 GLEAN mRNA 289939 290011 0.642724 - . ID=CGI_10019094; scaffold507 TRF Tandem_Repeat 289939 290011 128 + . . scaffold507 GLEAN mRNA 295266 295484 0.642724 - . ID=CGI_10019094; scaffold507 TRF Tandem_Repeat 295266 295484 226 + . . scaffold507 GLEAN mRNA 299284 299727 0.642724 - . ID=CGI_10019094; scaffold507 TRF Tandem_Repeat 299284 299727 843 + . . scaffold507 GLEAN mRNA 354607 355149 0.986298 + . ID=CGI_10019097; scaffold507 WUBlastX LINE_Penelope 354607 355149 42 + . . scaffold507 GLEAN mRNA 388832 388964 1 - . ID=CGI_10019100; scaffold507 TRF Tandem_Repeat 388832 388964 129 + . . scaffold507 GLEAN mRNA 388865 389140 1 - . ID=CGI_10019100; scaffold507 TRF Tandem_Repeat 388865 389140 355 + . . scaffold507 GLEAN mRNA 404371 404424 0.653689 - . ID=CGI_10019101; scaffold507 TRF Tandem_Repeat 404371 404424 108 + . . scaffold507 GLEAN mRNA 424522 424583 0.999619 + . ID=CGI_10019102; scaffold507 TRF Tandem_Repeat 424522 424583 124 + . . scaffold507 GLEAN mRNA 492336 492426 0.51402 + . ID=CGI_10019104; scaffold507 WUBlastX DNA_Academ 492336 492542 35 + . . scaffold507 GLEAN mRNA 492046 492339 0.51402 + . ID=CGI_10019104; scaffold507 WUBlastX DNA_Academ 491074 492339 405 + . . scaffold507 GLEAN mRNA 492575 493705 0.26572 + . ID=CGI_10019105; scaffold507 WUBlastX DNA_Academ 492548 493906 632 + . . scaffold305 GLEAN mRNA 2167 2655 0.539942 + . ID=CGI_10019108; scaffold305 TRF Tandem_Repeat 2167 2655 691 + . . scaffold305 GLEAN mRNA 37108 37167 0.896803 - . ID=CGI_10019112; scaffold305 TRF Tandem_Repeat 37108 37167 57 + . . scaffold305 GLEAN mRNA 36708 37079 0.896803 - . ID=CGI_10019112; scaffold305 WUBlastX LINE_RTE-X 36708 37079 120 + . . scaffold305 GLEAN mRNA 45223 45258 0.944477 + . ID=CGI_10019113; scaffold305 TRF Tandem_Repeat 45223 45258 72 + . . scaffold305 GLEAN mRNA 117899 118017 0.986225 - . ID=CGI_10019117; scaffold305 TRF Tandem_Repeat 117899 118017 102 + . . scaffold305 GLEAN mRNA 129091 129255 0.986225 - . ID=CGI_10019117; scaffold305 WUBlastX LTR_Gypsy 129091 129255 28 - . . scaffold305 GLEAN mRNA 124324 127791 0.986225 - . ID=CGI_10019117; scaffold305 WUBlastX LTR_Gypsy 124324 127791 2459 - . . scaffold305 GLEAN mRNA 124168 128310 0.986225 - . ID=CGI_10019117; scaffold305 WUBlastX LTR_Gypsy 124168 128310 2394 - . . scaffold305 GLEAN mRNA 128397 129095 0.986225 - . ID=CGI_10019117; scaffold305 WUBlastX LTR_Gypsy-Cigr 128397 129095 202 - . . scaffold305 GLEAN mRNA 132058 132120 0.986225 - . ID=CGI_10019117; scaffold305 TRF Tandem_Repeat 132058 132120 126 + . . scaffold305 GLEAN mRNA 134353 134378 0.544675 - . ID=CGI_10019118; scaffold305 TRF Tandem_Repeat 134353 134378 52 + . . scaffold305 GLEAN mRNA 139200 140600 0.544675 - . ID=CGI_10019118; scaffold305 WUBlastX LINE_L1-Tx1 139200 140600 160 + . . scaffold305 GLEAN mRNA 138909 139559 0.544675 - . ID=CGI_10019118; scaffold305 WUBlastX LINE_L1-Tx1 138909 139559 97 + . . scaffold305 GLEAN mRNA 139902 140642 0.544675 - . ID=CGI_10019118; scaffold305 WUBlastX LINE_L1 139902 140642 263 + . . scaffold305 GLEAN mRNA 140867 141076 0.544675 - . ID=CGI_10019118; scaffold305 WUBlastX LINE_L1 140867 141076 47 + . . scaffold305 GLEAN mRNA 140641 140901 0.544675 - . ID=CGI_10019118; scaffold305 WUBlastX LINE_L1 140641 140901 74 + . . scaffold305 GLEAN mRNA 141519 141689 0.544675 - . ID=CGI_10019118; scaffold305 WUBlastX LINE_L1 141519 141689 22 + . . scaffold305 GLEAN mRNA 140647 140859 0.544675 - . ID=CGI_10019118; scaffold305 WUBlastX LINE_L1 140647 140859 92 + . . scaffold305 GLEAN mRNA 141235 141339 0.544675 - . ID=CGI_10019118; scaffold305 WUBlastX LINE_L1-Tx1 141235 141339 24 + . . scaffold305 GLEAN mRNA 143065 143682 0.544675 - . ID=CGI_10019118; scaffold305 WUBlastX LINE_Penelope 143065 143682 69 - . . scaffold305 GLEAN mRNA 173919 173960 0.995798 - . ID=CGI_10019119; scaffold305 TRF Tandem_Repeat 173919 173960 66 + . . scaffold305 GLEAN mRNA 178543 178896 0.995798 - . ID=CGI_10019119; scaffold305 WUBlastX DNA_hAT-Tip100 178543 178896 21 - . . scaffold305 GLEAN mRNA 178540 178824 0.995798 - . ID=CGI_10019119; scaffold305 WUBlastX DNA_hAT-Tip100 178540 178824 67 - . . scaffold305 GLEAN mRNA 177534 178436 0.995798 - . ID=CGI_10019119; scaffold305 WUBlastX DNA_hAT-Tip100 177534 178436 480 - . . scaffold305 GLEAN mRNA 178439 178552 0.995798 - . ID=CGI_10019119; scaffold305 WUBlastX DNA_hAT-Tip100 178439 178552 21 - . . scaffold305 GLEAN mRNA 178543 178758 0.995798 - . ID=CGI_10019119; scaffold305 WUBlastX DNA_hAT-Tip100 178543 178758 119 - . . scaffold305 GLEAN mRNA 230678 231044 0.33306 + . ID=CGI_10019122; scaffold305 TRF Tandem_Repeat 230678 231044 471 + . . scaffold305 GLEAN mRNA 230674 231050 0.33306 + . ID=CGI_10019122; scaffold305 TRF Tandem_Repeat 230674 231050 431 + . . scaffold305 GLEAN mRNA 231861 232030 0.33306 + . ID=CGI_10019122; scaffold305 TRF Tandem_Repeat 231861 232030 182 + . . scaffold305 GLEAN mRNA 234692 235332 0.33306 + . ID=CGI_10019122; scaffold305 TRF Tandem_Repeat 234692 235332 985 + . . scaffold305 GLEAN mRNA 236762 237862 0.557307 + . ID=CGI_10019123; scaffold305 TRF Tandem_Repeat 236762 237862 2121 + . . scaffold305 GLEAN mRNA 244008 244351 0.557307 + . ID=CGI_10019123; scaffold305 TRF Tandem_Repeat 244008 244351 620 + . . scaffold305 GLEAN mRNA 247782 248077 0.557307 + . ID=CGI_10019123; scaffold305 TRF Tandem_Repeat 247782 248077 529 + . . scaffold305 GLEAN mRNA 257508 257939 0.912097 + . ID=CGI_10019124; scaffold305 WUBlastX LINE_RTE-X 257508 257939 49 + . . scaffold305 GLEAN mRNA 257508 257867 0.912097 + . ID=CGI_10019124; scaffold305 WUBlastX LINE_RTE-X 257508 257867 75 + . . scaffold305 GLEAN mRNA 257523 257807 0.912097 + . ID=CGI_10019124; scaffold305 WUBlastX LINE_RTE-X 257523 257807 112 + . . scaffold305 GLEAN mRNA 275881 276001 0.987924 - . ID=CGI_10019127; scaffold305 TRF Tandem_Repeat 275881 276001 188 + . . scaffold305 GLEAN mRNA 275866 276011 0.987924 - . ID=CGI_10019127; scaffold305 TRF Tandem_Repeat 275866 276011 163 + . . scaffold305 GLEAN mRNA 277183 277224 0.987924 - . ID=CGI_10019127; scaffold305 TRF Tandem_Repeat 277183 277224 84 + . . scaffold305 GLEAN mRNA 278755 278862 0.987924 - . ID=CGI_10019127; scaffold305 TRF Tandem_Repeat 278755 278862 111 + . . scaffold305 GLEAN mRNA 278745 278846 0.987924 - . ID=CGI_10019127; scaffold305 TRF Tandem_Repeat 278745 278846 152 + . . scaffold305 GLEAN mRNA 282369 282475 0.987924 - . ID=CGI_10019127; scaffold305 TRF Tandem_Repeat 282369 282475 88 + . . scaffold305 GLEAN mRNA 325026 325114 0.796708 - . ID=CGI_10019131; scaffold305 TRF Tandem_Repeat 325026 325114 171 + . . scaffold305 GLEAN mRNA 329726 330068 0.762281 + . ID=CGI_10019132; scaffold305 TRF Tandem_Repeat 329726 330068 361 + . . scaffold305 GLEAN mRNA 329726 330068 0.762281 + . ID=CGI_10019132; scaffold305 TRF Tandem_Repeat 329726 330068 400 + . . scaffold305 GLEAN mRNA 329874 330048 0.762281 + . ID=CGI_10019132; scaffold305 TRF Tandem_Repeat 329874 330048 171 + . . scaffold305 GLEAN mRNA 335073 335499 0.762281 + . ID=CGI_10019132; scaffold305 TRF Tandem_Repeat 335073 335499 510 + . . scaffold305 GLEAN mRNA 352047 352269 0.762281 + . ID=CGI_10019132; scaffold305 TRF Tandem_Repeat 352047 352269 439 + . . scaffold305 GLEAN mRNA 353659 353724 0.762281 + . ID=CGI_10019132; scaffold305 TRF Tandem_Repeat 353659 353724 60 + . . scaffold305 GLEAN mRNA 354612 354676 0.762281 + . ID=CGI_10019132; scaffold305 TRF Tandem_Repeat 354612 354676 94 + . . scaffold305 GLEAN mRNA 355567 355725 0.762281 + . ID=CGI_10019132; scaffold305 TRF Tandem_Repeat 355567 355725 158 + . . scaffold305 GLEAN mRNA 356493 357975 0.762281 + . ID=CGI_10019132; scaffold305 TRF Tandem_Repeat 356493 357975 2570 + . . scaffold305 GLEAN mRNA 375595 375652 0.999675 + . ID=CGI_10019135; scaffold305 TRF Tandem_Repeat 375595 375652 107 + . . scaffold305 GLEAN mRNA 395168 395194 0.455562 - . ID=CGI_10019136; scaffold305 TRF Tandem_Repeat 395168 395194 54 + . . scaffold305 GLEAN mRNA 412444 412760 0.999999 + . ID=CGI_10019138; scaffold305 TRF Tandem_Repeat 412444 412760 338 + . . scaffold305 GLEAN mRNA 418823 418858 1 - . ID=CGI_10019139; scaffold305 TRF Tandem_Repeat 418823 418858 72 + . . scaffold305 GLEAN mRNA 420890 420928 1 - . ID=CGI_10019139; scaffold305 TRF Tandem_Repeat 420890 420928 78 + . . scaffold305 GLEAN mRNA 440183 440494 0.78661 - . ID=CGI_10019140; scaffold305 WUBlastX DNA_MuDR 440183 440494 43 - . . scaffold305 GLEAN mRNA 445064 445090 0.78661 - . ID=CGI_10019140; scaffold305 TRF Tandem_Repeat 445064 445090 54 + . . scaffold305 GLEAN mRNA 443253 443354 0.78661 - . ID=CGI_10019140; scaffold305 WUBlastX DNA_NOF 443253 443354 23 + . . scaffold305 GLEAN mRNA 453477 453522 0.999234 + . ID=CGI_10019141; scaffold305 TRF Tandem_Repeat 453477 453522 92 + . . scaffold305 GLEAN mRNA 460676 460709 0.999234 + . ID=CGI_10019141; scaffold305 TRF Tandem_Repeat 460676 460709 68 + . . scaffold305 GLEAN mRNA 466389 466441 0.999234 + . ID=CGI_10019141; scaffold305 TRF Tandem_Repeat 466389 466441 99 + . . scaffold305 GLEAN mRNA 464358 465029 0.999234 + . ID=CGI_10019141; scaffold305 WUBlastX LINE_L1-Tx1 464358 465029 76 - . . scaffold305 GLEAN mRNA 464703 465023 0.999234 + . ID=CGI_10019141; scaffold305 WUBlastX LINE_L1-Tx1 464703 465023 134 - . . scaffold305 GLEAN mRNA 464990 466078 0.999234 + . ID=CGI_10019141; scaffold305 WUBlastX LINE_L1-Tx1 464990 466078 520 - . . scaffold305 GLEAN mRNA 463758 464045 0.999234 + . ID=CGI_10019141; scaffold305 WUBlastX LINE_L1 463758 464045 20 - . . scaffold305 GLEAN mRNA 513958 515334 0.837081 - . ID=CGI_10019146; scaffold305 WUBlastX DNA_hAT 513958 515334 319 - . . scaffold942 GLEAN mRNA 45998 46247 1 - . ID=CGI_10019152; scaffold942 TRF Tandem_Repeat 45998 46247 92 + . . scaffold942 GLEAN mRNA 47158 47924 1 - . ID=CGI_10019152; scaffold942 TRF Tandem_Repeat 47158 47924 1028 + . . scaffold942 GLEAN mRNA 127674 127707 0.300224 + . ID=CGI_10019154; scaffold942 TRF Tandem_Repeat 127674 127707 50 + . . scaffold942 GLEAN mRNA 114740 115303 0.300224 + . ID=CGI_10019154; scaffold942 WUBlastX LINE_Penelope 114740 115303 147 + . . scaffold942 GLEAN mRNA 124204 124674 0.300224 + . ID=CGI_10019154; scaffold942 WUBlastX DNA_PiggyBac 124204 124674 196 - . . scaffold942 GLEAN mRNA 114725 115438 0.300224 + . ID=CGI_10019154; scaffold942 WUBlastX LINE_Penelope 114725 115438 140 + . . scaffold942 GLEAN mRNA 124694 125830 0.300224 + . ID=CGI_10019154; scaffold942 WUBlastX DNA_PiggyBac 124694 125830 562 - . . scaffold942 GLEAN mRNA 177262 177314 0.24351 + . ID=CGI_10019155; scaffold942 TRF Tandem_Repeat 177262 177314 106 + . . scaffold942 GLEAN mRNA 265747 265908 0.793856 - . ID=CGI_10019160; scaffold942 TRF Tandem_Repeat 265747 265908 192 + . . scaffold942 GLEAN mRNA 293144 293213 0.99178 + . ID=CGI_10019161; scaffold942 TRF Tandem_Repeat 293144 293213 54 + . . scaffold942 GLEAN mRNA 303010 303218 0.876986 + . ID=CGI_10019162; scaffold942 TRF Tandem_Repeat 303010 303218 201 + . . scaffold942 GLEAN mRNA 306230 306295 0.876986 + . ID=CGI_10019162; scaffold942 TRF Tandem_Repeat 306230 306295 132 + . . scaffold942 GLEAN mRNA 341994 342062 0.998888 - . ID=CGI_10019165; scaffold942 TRF Tandem_Repeat 341994 342062 138 + . . scaffold942 GLEAN mRNA 344154 344199 0.998888 - . ID=CGI_10019165; scaffold942 TRF Tandem_Repeat 344154 344199 92 + . . scaffold942 GLEAN mRNA 344392 344736 0.998888 - . ID=CGI_10019165; scaffold942 WUBlastX LTR_Pao 344392 344736 158 - . . scaffold942 GLEAN mRNA 366386 366433 0.999087 + . ID=CGI_10019167; scaffold942 TRF Tandem_Repeat 366386 366433 96 + . . scaffold942 GLEAN mRNA 393593 393617 0.734087 - . ID=CGI_10019170; scaffold942 TRF Tandem_Repeat 393593 393617 50 + . . scaffold942 GLEAN mRNA 395443 395491 0.734087 - . ID=CGI_10019170; scaffold942 TRF Tandem_Repeat 395443 395491 98 + . . scaffold942 GLEAN mRNA 405052 405081 0.734087 - . ID=CGI_10019170; scaffold942 TRF Tandem_Repeat 405052 405081 60 + . . scaffold942 GLEAN mRNA 405235 405266 0.734087 - . ID=CGI_10019170; scaffold942 TRF Tandem_Repeat 405235 405266 64 + . . scaffold942 GLEAN mRNA 405264 405301 0.734087 - . ID=CGI_10019170; scaffold942 TRF Tandem_Repeat 405264 405301 76 + . . scaffold942 GLEAN mRNA 396811 397032 0.734087 - . ID=CGI_10019170; scaffold942 WUBlastX DNA_TcMar-Tc1 396811 397032 117 + . . scaffold942 GLEAN mRNA 396242 396808 0.734087 - . ID=CGI_10019170; scaffold942 WUBlastX DNA_TcMar-Tc1 396242 396808 210 + . . scaffold942 GLEAN mRNA 397029 397151 0.734087 - . ID=CGI_10019170; scaffold942 WUBlastX DNA_TcMar-Tc1 397029 397151 76 + . . scaffold942 GLEAN mRNA 396847 397074 0.734087 - . ID=CGI_10019170; scaffold942 WUBlastX DNA_TcMar-Tc1 396847 397074 87 + . . scaffold942 GLEAN mRNA 428558 428615 0.999624 + . ID=CGI_10019173; scaffold942 TRF Tandem_Repeat 428558 428615 116 + . . scaffold942 GLEAN mRNA 430878 430925 0.999624 + . ID=CGI_10019173; scaffold942 TRF Tandem_Repeat 430878 430925 96 + . . scaffold942 GLEAN mRNA 442761 443720 1 - . ID=CGI_10019174; scaffold942 TRF Tandem_Repeat 442761 443720 1366 + . . scaffold942 GLEAN mRNA 445573 445947 1 - . ID=CGI_10019174; scaffold942 TRF Tandem_Repeat 445573 445947 588 + . . scaffold942 GLEAN mRNA 446776 447666 1 - . ID=CGI_10019174; scaffold942 TRF Tandem_Repeat 446776 447666 1147 + . . scaffold942 GLEAN mRNA 468785 469142 0.28125 + . ID=CGI_10019176; scaffold942 TRF Tandem_Repeat 468785 469142 443 + . . scaffold942 GLEAN mRNA 478959 479837 0.28125 + . ID=CGI_10019176; scaffold942 TRF Tandem_Repeat 478959 479837 1244 + . . scaffold942 GLEAN mRNA 480781 480927 0.28125 + . ID=CGI_10019176; scaffold942 TRF Tandem_Repeat 480781 480927 73 + . . scaffold942 GLEAN mRNA 480843 480972 0.28125 + . ID=CGI_10019176; scaffold942 TRF Tandem_Repeat 480843 480972 93 + . . scaffold942 GLEAN mRNA 485474 485498 0.920284 + . ID=CGI_10019177; scaffold942 TRF Tandem_Repeat 485474 485498 50 + . . scaffold126 GLEAN mRNA 73006 73065 0.988186 + . ID=CGI_10019179; scaffold126 TRF Tandem_Repeat 73006 73065 104 + . . scaffold126 GLEAN mRNA 72071 72202 0.988186 + . ID=CGI_10019179; scaffold126 WUBlastX DNA_Harbinger 71990 72202 69 + . . scaffold126 GLEAN mRNA 72071 72184 0.988186 + . ID=CGI_10019179; scaffold126 WUBlastX DNA_Harbinger 72041 72184 79 + . . scaffold126 GLEAN mRNA 191700 191816 0.835438 + . ID=CGI_10019182; scaffold126 TRF Tandem_Repeat 191700 191816 74 + . . scaffold126 GLEAN mRNA 195530 195590 0.835438 + . ID=CGI_10019182; scaffold126 TRF Tandem_Repeat 195530 195590 58 + . . scaffold126 GLEAN mRNA 191700 191816 0.985607 - . ID=CGI_10019184; scaffold126 TRF Tandem_Repeat 191700 191816 74 + . . scaffold126 GLEAN mRNA 195530 195590 0.985607 - . ID=CGI_10019184; scaffold126 TRF Tandem_Repeat 195530 195590 58 + . . scaffold126 GLEAN mRNA 216701 217495 0.491639 + . ID=CGI_10019186; scaffold126 TRF Tandem_Repeat 216701 217495 261 + . . scaffold126 GLEAN mRNA 216884 217535 0.491639 + . ID=CGI_10019186; scaffold126 TRF Tandem_Repeat 216884 217535 885 + . . scaffold126 GLEAN mRNA 219259 220884 0.491639 + . ID=CGI_10019186; scaffold126 WUBlastX LINE_L2 219259 220884 929 + . . scaffold126 GLEAN mRNA 219076 220056 0.491639 + . ID=CGI_10019186; scaffold126 WUBlastX LINE_Rex-Babar 219076 220056 156 + . . scaffold126 GLEAN mRNA 252766 252809 0.999956 + . ID=CGI_10019188; scaffold126 TRF Tandem_Repeat 252766 252809 70 + . . scaffold126 GLEAN mRNA 251927 252268 0.999956 + . ID=CGI_10019188; scaffold126 WUBlastX DNA_Kolobok-IS4 251927 252268 135 - . . scaffold126 GLEAN mRNA 252500 252625 0.999956 + . ID=CGI_10019188; scaffold126 WUBlastX DNA_IS4EU 252500 252625 29 - . . scaffold126 GLEAN mRNA 253377 253865 0.999956 + . ID=CGI_10019188; scaffold126 WUBlastX DNA_IS4EU 253377 253865 52 - . . scaffold126 GLEAN mRNA 251921 252346 0.999956 + . ID=CGI_10019188; scaffold126 WUBlastX DNA_IS4EU 251921 252346 112 - . . scaffold126 GLEAN mRNA 252491 252592 0.999956 + . ID=CGI_10019188; scaffold126 WUBlastX DNA_IS4EU 252491 252592 33 - . . scaffold126 GLEAN mRNA 271185 271526 0.813518 - . ID=CGI_10019191; scaffold126 WUBlastX LTR_Gypsy 271185 271526 100 + . . scaffold126 GLEAN mRNA 392984 393050 0.997493 + . ID=CGI_10019196; scaffold126 TRF Tandem_Repeat 392984 393050 89 + . . scaffold126 GLEAN mRNA 387864 388868 0.997493 + . ID=CGI_10019196; scaffold126 WUBlastX DNA_IS4EU 387864 388868 601 + . . scaffold126 GLEAN mRNA 398841 398871 0.997493 + . ID=CGI_10019196; scaffold126 TRF Tandem_Repeat 398841 398871 62 + . . scaffold126 GLEAN mRNA 406752 406796 0.306208 + . ID=CGI_10019197; scaffold126 TRF Tandem_Repeat 406752 406796 74 + . . scaffold126 GLEAN mRNA 579025 579267 0.999598 + . ID=CGI_10019200; scaffold126 WUBlastX DNA_MuDR 579025 579267 86 + . . scaffold126 GLEAN mRNA 579734 580051 0.999598 + . ID=CGI_10019200; scaffold126 WUBlastX DNA_MuDR 579734 580051 64 + . . scaffold126 GLEAN mRNA 579445 579690 0.999598 + . ID=CGI_10019200; scaffold126 WUBlastX DNA_MuDR 579445 579690 48 + . . scaffold126 GLEAN mRNA 579743 579997 0.999598 + . ID=CGI_10019200; scaffold126 WUBlastX DNA_MuDR 579743 579997 79 + . . scaffold126 GLEAN mRNA 579358 579612 0.999598 + . ID=CGI_10019200; scaffold126 WUBlastX DNA_MuDR 579358 579612 63 + . . scaffold126 GLEAN mRNA 579064 579261 0.999598 + . ID=CGI_10019200; scaffold126 WUBlastX DNA_MuDR 579064 579261 97 + . . scaffold126 GLEAN mRNA 579436 579603 0.999598 + . ID=CGI_10019200; scaffold126 WUBlastX DNA_MuDR 579436 579603 82 + . . scaffold980 GLEAN mRNA 19695 19996 0.993362 + . ID=CGI_10019201; scaffold980 TRF Tandem_Repeat 19695 19996 453 + . . scaffold980 GLEAN mRNA 32494 32533 0.920529 - . ID=CGI_10019203; scaffold980 TRF Tandem_Repeat 32494 32533 80 + . . scaffold980 GLEAN mRNA 52734 53655 0.883179 - . ID=CGI_10019204; scaffold980 TRF Tandem_Repeat 52734 53655 1374 + . . scaffold980 GLEAN mRNA 54518 54595 0.883179 - . ID=CGI_10019204; scaffold980 TRF Tandem_Repeat 54518 54595 52 + . . scaffold980 GLEAN mRNA 54698 54775 0.883179 - . ID=CGI_10019204; scaffold980 TRF Tandem_Repeat 54698 54775 63 + . . scaffold980 GLEAN mRNA 55439 55487 0.883179 - . ID=CGI_10019204; scaffold980 TRF Tandem_Repeat 55439 55487 98 + . . scaffold980 GLEAN mRNA 77767 78126 0.883179 - . ID=CGI_10019204; scaffold980 WUBlastX LINE_RTE-X 77767 78126 80 - . . scaffold980 GLEAN mRNA 78245 78658 0.883179 - . ID=CGI_10019204; scaffold980 WUBlastX LINE_RTE-X 78245 78658 233 - . . scaffold980 GLEAN mRNA 78621 79466 0.883179 - . ID=CGI_10019204; scaffold980 WUBlastX LINE_RTE-X 78621 79466 494 - . . scaffold980 GLEAN mRNA 77698 78246 0.883179 - . ID=CGI_10019204; scaffold980 WUBlastX LINE_RTE-X 77698 78246 74 - . . scaffold980 GLEAN mRNA 77815 78210 0.883179 - . ID=CGI_10019204; scaffold980 WUBlastX LINE_RTE-X 77815 78210 80 - . . scaffold980 GLEAN mRNA 78927 79571 0.883179 - . ID=CGI_10019204; scaffold980 WUBlastX LINE_L2 78927 79571 108 - . . scaffold980 GLEAN mRNA 80376 80426 0.883179 - . ID=CGI_10019204; scaffold980 WUBlastX LINE_I 80376 80426 22 - . . scaffold980 GLEAN mRNA 52734 53655 0.59339 + . ID=CGI_10019205; scaffold980 TRF Tandem_Repeat 52734 53655 1374 + . . scaffold980 GLEAN mRNA 54518 54595 0.59339 + . ID=CGI_10019205; scaffold980 TRF Tandem_Repeat 54518 54595 52 + . . scaffold980 GLEAN mRNA 54698 54775 0.59339 + . ID=CGI_10019205; scaffold980 TRF Tandem_Repeat 54698 54775 63 + . . scaffold980 GLEAN mRNA 55439 55487 0.59339 + . ID=CGI_10019205; scaffold980 TRF Tandem_Repeat 55439 55487 98 + . . scaffold980 GLEAN mRNA 167459 167494 0.499535 - . ID=CGI_10019213; scaffold980 TRF Tandem_Repeat 167459 167494 72 + . . scaffold980 GLEAN mRNA 165599 165874 0.499535 - . ID=CGI_10019213; scaffold980 WUBlastX LINE_RTE-X 165599 165874 33 + . . scaffold980 GLEAN mRNA 164936 165277 0.499535 - . ID=CGI_10019213; scaffold980 WUBlastX LINE_RTE-X 164936 165277 36 + . . scaffold980 GLEAN mRNA 165590 165724 0.499535 - . ID=CGI_10019213; scaffold980 WUBlastX LINE_RTE-X 165590 165724 60 + . . scaffold980 GLEAN mRNA 165587 165745 0.499535 - . ID=CGI_10019213; scaffold980 WUBlastX LINE_RTE-X 165587 165745 42 + . . scaffold980 GLEAN mRNA 165166 165585 0.499535 - . ID=CGI_10019213; scaffold980 WUBlastX LINE_RTE-X 165166 165585 124 + . . scaffold980 GLEAN mRNA 177128 177791 0.851147 + . ID=CGI_10019214; scaffold980 TRF Tandem_Repeat 177128 177791 209 + . . scaffold980 GLEAN mRNA 177380 177784 0.851147 + . ID=CGI_10019214; scaffold980 TRF Tandem_Repeat 177380 177784 447 + . . scaffold980 GLEAN mRNA 177112 177784 0.851147 + . ID=CGI_10019214; scaffold980 TRF Tandem_Repeat 177112 177784 487 + . . scaffold980 GLEAN mRNA 177851 178037 0.851147 + . ID=CGI_10019214; scaffold980 TRF Tandem_Repeat 177851 178037 207 + . . scaffold980 GLEAN mRNA 180050 180957 0.851147 + . ID=CGI_10019214; scaffold980 TRF Tandem_Repeat 180050 180957 1163 + . . scaffold980 GLEAN mRNA 241948 242148 0.518358 - . ID=CGI_10019216; scaffold980 WUBlastX DNA_Academ 241948 242283 89 - . . scaffold980 GLEAN mRNA 241999 242148 0.518358 - . ID=CGI_10019216; scaffold980 WUBlastX DNA_Academ 241999 242241 91 - . . scaffold980 GLEAN mRNA 242201 242283 0.579788 - . ID=CGI_10019217; scaffold980 WUBlastX DNA_Academ 241948 242283 89 - . . scaffold980 GLEAN mRNA 242261 242881 0.579788 - . ID=CGI_10019217; scaffold980 WUBlastX DNA_Academ 242261 242881 299 - . . scaffold980 GLEAN mRNA 242879 242902 0.579788 - . ID=CGI_10019217; scaffold980 WUBlastX DNA_Academ 242879 243469 297 - . . scaffold980 GLEAN mRNA 242201 242241 0.579788 - . ID=CGI_10019217; scaffold980 WUBlastX DNA_Academ 241999 242241 91 - . . scaffold980 GLEAN mRNA 362909 362957 0.716831 + . ID=CGI_10019222; scaffold980 TRF Tandem_Repeat 362909 362957 57 + . . scaffold980 GLEAN mRNA 363136 364459 0.716831 + . ID=CGI_10019222; scaffold980 TRF Tandem_Repeat 363136 364459 1340 + . . scaffold980 GLEAN mRNA 410822 410910 1 + . ID=CGI_10019228; scaffold980 TRF Tandem_Repeat 410822 410910 160 + . . scaffold980 GLEAN mRNA 439333 439374 0.951926 - . ID=CGI_10019232; scaffold980 TRF Tandem_Repeat 439333 439374 66 + . . scaffold980 GLEAN mRNA 442401 442642 0.593329 + . ID=CGI_10019233; scaffold980 TRF Tandem_Repeat 442401 442642 308 + . . scaffold980 GLEAN mRNA 523493 523535 0.997417 + . ID=CGI_10019242; scaffold980 TRF Tandem_Repeat 523493 523535 86 + . . scaffold980 GLEAN mRNA 523818 523859 0.997417 + . ID=CGI_10019242; scaffold980 TRF Tandem_Repeat 523818 523859 84 + . . scaffold980 GLEAN mRNA 538696 538721 0.999816 + . ID=CGI_10019244; scaffold980 TRF Tandem_Repeat 538696 538721 52 + . . scaffold980 GLEAN mRNA 545445 546190 0.999816 + . ID=CGI_10019244; scaffold980 TRF Tandem_Repeat 545445 546190 977 + . . scaffold980 GLEAN mRNA 547254 547321 0.999816 + . ID=CGI_10019244; scaffold980 TRF Tandem_Repeat 547254 547321 70 + . . scaffold980 GLEAN mRNA 551151 551897 0.999816 + . ID=CGI_10019244; scaffold980 TRF Tandem_Repeat 551151 551897 880 + . . scaffold980 GLEAN mRNA 553501 553530 0.999816 + . ID=CGI_10019244; scaffold980 TRF Tandem_Repeat 553501 553530 51 + . . scaffold980 GLEAN mRNA 572731 572874 0.991145 + . ID=CGI_10019247; scaffold980 WUBlastX LTR_Gypsy 572731 572874 26 + . . scaffold980 GLEAN mRNA 572275 572397 0.991145 + . ID=CGI_10019247; scaffold980 WUBlastX LTR_Gypsy 572275 572397 31 + . . scaffold506 GLEAN mRNA 12586 12771 0.84057 - . ID=CGI_10019249; scaffold506 TRF Tandem_Repeat 12586 12771 90 + . . scaffold506 GLEAN mRNA 15463 15570 0.84057 - . ID=CGI_10019249; scaffold506 TRF Tandem_Repeat 15463 15570 81 + . . scaffold506 GLEAN mRNA 15516 15596 0.84057 - . ID=CGI_10019249; scaffold506 TRF Tandem_Repeat 15516 15596 63 + . . scaffold506 GLEAN mRNA 19382 19442 0.84057 - . ID=CGI_10019249; scaffold506 TRF Tandem_Repeat 19382 19442 122 + . . scaffold506 GLEAN mRNA 25100 25155 0.999675 - . ID=CGI_10019250; scaffold506 TRF Tandem_Repeat 25100 25155 76 + . . scaffold506 GLEAN mRNA 25103 25155 0.999675 - . ID=CGI_10019250; scaffold506 TRF Tandem_Repeat 25103 25155 88 + . . scaffold506 GLEAN mRNA 31912 31952 0.999675 - . ID=CGI_10019250; scaffold506 TRF Tandem_Repeat 31912 31952 73 + . . scaffold506 GLEAN mRNA 48484 48540 1 - . ID=CGI_10019252; scaffold506 TRF Tandem_Repeat 48484 48540 105 + . . scaffold506 GLEAN mRNA 62309 62341 0.999676 - . ID=CGI_10019254; scaffold506 TRF Tandem_Repeat 62309 62341 66 + . . scaffold506 GLEAN mRNA 73743 73792 0.999676 - . ID=CGI_10019254; scaffold506 TRF Tandem_Repeat 73743 73792 100 + . . scaffold506 GLEAN mRNA 89703 89739 0.926793 + . ID=CGI_10019256; scaffold506 TRF Tandem_Repeat 89703 89739 65 + . . scaffold506 GLEAN mRNA 90627 90670 0.926793 + . ID=CGI_10019256; scaffold506 TRF Tandem_Repeat 90627 90670 79 + . . scaffold506 GLEAN mRNA 92101 92372 0.926793 + . ID=CGI_10019256; scaffold506 TRF Tandem_Repeat 92101 92372 400 + . . scaffold506 GLEAN mRNA 92112 92372 0.926793 + . ID=CGI_10019256; scaffold506 TRF Tandem_Repeat 92112 92372 441 + . . scaffold506 GLEAN mRNA 117661 117688 0.836195 - . ID=CGI_10019257; scaffold506 TRF Tandem_Repeat 117661 117688 56 + . . scaffold506 GLEAN mRNA 152163 152225 0.999986 - . ID=CGI_10019258; scaffold506 TRF Tandem_Repeat 152163 152225 126 + . . scaffold506 GLEAN mRNA 197735 197790 0.798105 - . ID=CGI_10019259; scaffold506 TRF Tandem_Repeat 197735 197790 112 + . . scaffold506 GLEAN mRNA 250873 250928 0.986132 + . ID=CGI_10019263; scaffold506 TRF Tandem_Repeat 250873 250928 112 + . . scaffold506 GLEAN mRNA 254966 255006 0.986132 + . ID=CGI_10019263; scaffold506 TRF Tandem_Repeat 254966 255006 82 + . . scaffold506 GLEAN mRNA 255409 255459 0.986132 + . ID=CGI_10019263; scaffold506 TRF Tandem_Repeat 255409 255459 68 + . . scaffold506 GLEAN mRNA 259059 259100 0.986132 + . ID=CGI_10019263; scaffold506 TRF Tandem_Repeat 259059 259100 84 + . . scaffold506 GLEAN mRNA 264118 264155 0.986132 + . ID=CGI_10019263; scaffold506 TRF Tandem_Repeat 264118 264155 76 + . . scaffold506 GLEAN mRNA 265617 265859 0.986132 + . ID=CGI_10019263; scaffold506 WUBlastX LINE_CR1-L2 265617 265859 36 - . . scaffold506 GLEAN mRNA 272493 273039 0.997596 + . ID=CGI_10019265; scaffold506 TRF Tandem_Repeat 272493 273039 829 + . . scaffold506 GLEAN mRNA 274554 274609 0.997596 + . ID=CGI_10019265; scaffold506 TRF Tandem_Repeat 274554 274609 112 + . . scaffold506 GLEAN mRNA 333505 333644 0.840962 + . ID=CGI_10019269; scaffold506 TRF Tandem_Repeat 333505 333644 153 + . . scaffold506 GLEAN mRNA 339055 339194 0.840962 + . ID=CGI_10019269; scaffold506 TRF Tandem_Repeat 339055 339194 153 + . . scaffold506 GLEAN mRNA 349173 349269 0.817461 - . ID=CGI_10019270; scaffold506 TRF Tandem_Repeat 349173 349269 107 + . . scaffold506 GLEAN mRNA 370882 370938 0.965303 - . ID=CGI_10019271; scaffold506 TRF Tandem_Repeat 370882 370938 114 + . . scaffold506 GLEAN mRNA 379718 379775 1 + . ID=CGI_10019272; scaffold506 TRF Tandem_Repeat 379718 379775 116 + . . scaffold506 GLEAN mRNA 382339 382374 1 + . ID=CGI_10019272; scaffold506 TRF Tandem_Repeat 382339 382374 72 + . . scaffold506 GLEAN mRNA 393000 393039 0.799315 + . ID=CGI_10019274; scaffold506 TRF Tandem_Repeat 393000 393039 62 + . . scaffold506 GLEAN mRNA 401168 401213 0.799315 + . ID=CGI_10019274; scaffold506 TRF Tandem_Repeat 401168 401213 92 + . . scaffold506 GLEAN mRNA 408087 408113 0.751063 - . ID=CGI_10019275; scaffold506 TRF Tandem_Repeat 408087 408113 54 + . . scaffold506 GLEAN mRNA 408962 409068 0.751063 - . ID=CGI_10019275; scaffold506 TRF Tandem_Repeat 408962 409068 178 + . . scaffold506 GLEAN mRNA 408962 409068 0.751063 - . ID=CGI_10019275; scaffold506 TRF Tandem_Repeat 408962 409068 196 + . . scaffold506 GLEAN mRNA 434396 434452 0.39125 + . ID=CGI_10019276; scaffold506 TRF Tandem_Repeat 434396 434452 114 + . . scaffold506 GLEAN mRNA 438473 438545 0.39125 + . ID=CGI_10019276; scaffold506 TRF Tandem_Repeat 438473 438545 96 + . . scaffold506 GLEAN mRNA 436077 436388 0.39125 + . ID=CGI_10019276; scaffold506 WUBlastX LINE_L2 436077 436388 69 - . . scaffold506 GLEAN mRNA 444253 444318 0.39125 + . ID=CGI_10019276; scaffold506 TRF Tandem_Repeat 444253 444318 132 + . . scaffold506 GLEAN mRNA 453600 453635 0.39125 + . ID=CGI_10019276; scaffold506 TRF Tandem_Repeat 453600 453635 72 + . . scaffold506 GLEAN mRNA 453652 453707 0.39125 + . ID=CGI_10019276; scaffold506 TRF Tandem_Repeat 453652 453707 103 + . . scaffold506 GLEAN mRNA 453964 454011 0.39125 + . ID=CGI_10019276; scaffold506 TRF Tandem_Repeat 453964 454011 96 + . . scaffold506 GLEAN mRNA 454851 454884 0.39125 + . ID=CGI_10019276; scaffold506 TRF Tandem_Repeat 454851 454884 68 + . . scaffold506 GLEAN mRNA 456251 456290 0.39125 + . ID=CGI_10019276; scaffold506 TRF Tandem_Repeat 456251 456290 80 + . . scaffold506 GLEAN mRNA 459625 459693 0.39125 + . ID=CGI_10019276; scaffold506 TRF Tandem_Repeat 459625 459693 120 + . . scaffold506 GLEAN mRNA 463643 463699 0.39125 + . ID=CGI_10019276; scaffold506 TRF Tandem_Repeat 463643 463699 114 + . . scaffold506 GLEAN mRNA 463789 463823 0.39125 + . ID=CGI_10019276; scaffold506 TRF Tandem_Repeat 463789 463823 70 + . . scaffold506 GLEAN mRNA 503114 503173 0.368875 + . ID=CGI_10019278; scaffold506 TRF Tandem_Repeat 503114 503173 120 + . . scaffold506 GLEAN mRNA 510004 510114 0.368875 + . ID=CGI_10019278; scaffold506 TRF Tandem_Repeat 510004 510114 204 + . . scaffold506 GLEAN mRNA 511580 511630 0.368875 + . ID=CGI_10019278; scaffold506 TRF Tandem_Repeat 511580 511630 102 + . . scaffold506 GLEAN mRNA 520393 520518 0.918675 + . ID=CGI_10019279; scaffold506 TRF Tandem_Repeat 520393 520518 207 + . . scaffold506 GLEAN mRNA 522445 522730 0.999997 + . ID=CGI_10019280; scaffold506 WUBlastX LTR_DIRS 522011 522730 385 + . . scaffold506 GLEAN mRNA 522625 523338 0.999997 + . ID=CGI_10019280; scaffold506 WUBlastX LTR_DIRS 522625 523338 456 + . . scaffold506 GLEAN mRNA 563836 563909 0.886004 + . ID=CGI_10019282; scaffold506 WUBlastX LINE_CR1 563836 564003 84 + . . scaffold506 GLEAN mRNA 563794 563909 0.886004 + . ID=CGI_10019282; scaffold506 WUBlastX LINE_CR1 563794 563997 79 + . . scaffold363 GLEAN mRNA 3432 3509 1 + . ID=CGI_10019283; scaffold363 TRF Tandem_Repeat 3432 3509 70 + . . scaffold363 GLEAN mRNA 6703 6748 1 + . ID=CGI_10019283; scaffold363 TRF Tandem_Repeat 6703 6748 92 + . . scaffold363 GLEAN mRNA 11604 11707 1 + . ID=CGI_10019283; scaffold363 TRF Tandem_Repeat 11604 11707 75 + . . scaffold363 GLEAN mRNA 11629 11728 1 + . ID=CGI_10019283; scaffold363 TRF Tandem_Repeat 11629 11728 105 + . . scaffold363 GLEAN mRNA 12849 13135 1 + . ID=CGI_10019283; scaffold363 TRF Tandem_Repeat 12849 13135 369 + . . scaffold363 GLEAN mRNA 13278 13312 1 + . ID=CGI_10019283; scaffold363 TRF Tandem_Repeat 13278 13312 70 + . . scaffold363 GLEAN mRNA 13448 13594 1 + . ID=CGI_10019283; scaffold363 TRF Tandem_Repeat 13448 13594 159 + . . scaffold363 GLEAN mRNA 13485 13642 1 + . ID=CGI_10019283; scaffold363 TRF Tandem_Repeat 13485 13642 183 + . . scaffold363 GLEAN mRNA 6703 6748 0.662434 - . ID=CGI_10019284; scaffold363 TRF Tandem_Repeat 6703 6748 92 + . . scaffold363 GLEAN mRNA 11604 11707 0.662434 - . ID=CGI_10019284; scaffold363 TRF Tandem_Repeat 11604 11707 75 + . . scaffold363 GLEAN mRNA 11629 11728 0.662434 - . ID=CGI_10019284; scaffold363 TRF Tandem_Repeat 11629 11728 105 + . . scaffold363 GLEAN mRNA 12849 13135 0.662434 - . ID=CGI_10019284; scaffold363 TRF Tandem_Repeat 12849 13135 369 + . . scaffold363 GLEAN mRNA 13278 13312 0.662434 - . ID=CGI_10019284; scaffold363 TRF Tandem_Repeat 13278 13312 70 + . . scaffold363 GLEAN mRNA 13448 13594 0.662434 - . ID=CGI_10019284; scaffold363 TRF Tandem_Repeat 13448 13594 159 + . . scaffold363 GLEAN mRNA 13485 13642 0.662434 - . ID=CGI_10019284; scaffold363 TRF Tandem_Repeat 13485 13642 183 + . . scaffold363 GLEAN mRNA 16574 16701 0.662434 - . ID=CGI_10019284; scaffold363 TRF Tandem_Repeat 16574 16701 184 + . . scaffold363 GLEAN mRNA 19149 19253 0.662434 - . ID=CGI_10019284; scaffold363 TRF Tandem_Repeat 19149 19253 142 + . . scaffold363 GLEAN mRNA 20819 22081 0.662434 - . ID=CGI_10019284; scaffold363 TRF Tandem_Repeat 20819 22081 1997 + . . scaffold363 GLEAN mRNA 25819 26566 0.662434 - . ID=CGI_10019284; scaffold363 TRF Tandem_Repeat 25819 26566 597 + . . scaffold363 GLEAN mRNA 49724 49762 1 + . ID=CGI_10019285; scaffold363 TRF Tandem_Repeat 49724 49762 78 + . . scaffold363 GLEAN mRNA 60107 60138 0.999999 + . ID=CGI_10019286; scaffold363 TRF Tandem_Repeat 60107 60138 64 + . . scaffold363 GLEAN mRNA 62918 62992 0.999999 + . ID=CGI_10019286; scaffold363 TRF Tandem_Repeat 62918 62992 80 + . . scaffold363 GLEAN mRNA 99447 99494 0.789891 - . ID=CGI_10019289; scaffold363 TRF Tandem_Repeat 99447 99494 51 + . . scaffold363 GLEAN mRNA 105876 106233 0.789891 - . ID=CGI_10019289; scaffold363 TRF Tandem_Repeat 105876 106233 469 + . . scaffold363 GLEAN mRNA 105974 106032 0.789891 - . ID=CGI_10019289; scaffold363 TRF Tandem_Repeat 105974 106032 50 + . . scaffold363 GLEAN mRNA 106043 106179 0.789891 - . ID=CGI_10019289; scaffold363 TRF Tandem_Repeat 106043 106179 103 + . . scaffold363 GLEAN mRNA 109396 109980 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 109396 109980 305 - . . scaffold363 GLEAN mRNA 111048 111779 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 111048 111863 388 - . . scaffold363 GLEAN mRNA 109056 109295 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 109056 109295 97 - . . scaffold363 GLEAN mRNA 109348 110097 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 109348 110097 172 - . . scaffold363 GLEAN mRNA 110902 111057 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 110902 111057 32 - . . scaffold363 GLEAN mRNA 109059 109349 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 109059 109349 49 - . . scaffold363 GLEAN mRNA 97875 98753 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Harbinger 97875 98753 595 + . . scaffold363 GLEAN mRNA 117952 118252 0.999905 - . ID=CGI_10019290; scaffold363 TRF Tandem_Repeat 117952 118252 204 + . . scaffold363 GLEAN mRNA 117923 118254 0.999905 - . ID=CGI_10019290; scaffold363 TRF Tandem_Repeat 117923 118254 225 + . . scaffold363 GLEAN mRNA 137727 137784 0.99909 + . ID=CGI_10019291; scaffold363 TRF Tandem_Repeat 137727 137784 73 + . . scaffold363 GLEAN mRNA 137743 137784 0.99909 + . ID=CGI_10019291; scaffold363 TRF Tandem_Repeat 137743 137784 66 + . . scaffold363 GLEAN mRNA 137954 138986 0.99909 + . ID=CGI_10019291; scaffold363 TRF Tandem_Repeat 137954 138986 1768 + . . scaffold363 GLEAN mRNA 141089 141973 0.99909 + . ID=CGI_10019291; scaffold363 TRF Tandem_Repeat 141089 141973 1188 + . . scaffold363 GLEAN mRNA 160219 160273 0.678055 + . ID=CGI_10019292; scaffold363 TRF Tandem_Repeat 160219 160273 110 + . . scaffold363 GLEAN mRNA 161809 161886 0.678055 + . ID=CGI_10019292; scaffold363 TRF Tandem_Repeat 161809 161886 149 + . . scaffold363 GLEAN mRNA 162080 162104 0.678055 + . ID=CGI_10019292; scaffold363 TRF Tandem_Repeat 162080 162104 50 + . . scaffold363 GLEAN mRNA 163086 163124 0.678055 + . ID=CGI_10019292; scaffold363 TRF Tandem_Repeat 163086 163124 78 + . . scaffold363 GLEAN mRNA 163415 163445 0.678055 + . ID=CGI_10019292; scaffold363 TRF Tandem_Repeat 163415 163445 62 + . . scaffold363 GLEAN mRNA 165770 166442 0.678055 + . ID=CGI_10019292; scaffold363 TRF Tandem_Repeat 165770 166696 1164 + . . scaffold363 GLEAN mRNA 195278 195343 0.999982 + . ID=CGI_10019295; scaffold363 TRF Tandem_Repeat 195278 195343 132 + . . scaffold363 GLEAN mRNA 195459 195500 0.999982 + . ID=CGI_10019295; scaffold363 TRF Tandem_Repeat 195459 195500 84 + . . scaffold363 GLEAN mRNA 200511 200566 0.999596 + . ID=CGI_10019296; scaffold363 TRF Tandem_Repeat 200511 200566 60 + . . scaffold363 GLEAN mRNA 203163 203708 0.999596 + . ID=CGI_10019296; scaffold363 WUBlastX DNA_hAT-Tip100 203163 203708 21 + . . scaffold363 GLEAN mRNA 210384 210419 0.402154 + . ID=CGI_10019297; scaffold363 TRF Tandem_Repeat 210384 210419 72 + . . scaffold363 GLEAN mRNA 216121 216157 0.402154 + . ID=CGI_10019297; scaffold363 TRF Tandem_Repeat 216121 216157 74 + . . scaffold363 GLEAN mRNA 244398 244466 0.648316 - . ID=CGI_10019299; scaffold363 TRF Tandem_Repeat 244398 244466 84 + . . scaffold363 GLEAN mRNA 244398 244466 0.648316 - . ID=CGI_10019299; scaffold363 TRF Tandem_Repeat 244398 244466 84 + . . scaffold363 GLEAN mRNA 244398 244466 0.648316 - . ID=CGI_10019299; scaffold363 TRF Tandem_Repeat 244398 244466 84 + . . scaffold363 GLEAN mRNA 244945 245235 0.648316 - . ID=CGI_10019299; scaffold363 WUBlastX LINE_RTE-BovB 244945 245235 76 + . . scaffold363 GLEAN mRNA 245014 245262 0.648316 - . ID=CGI_10019299; scaffold363 WUBlastX LINE_RTE-BovB 245014 245262 115 + . . scaffold363 GLEAN mRNA 271417 272470 0.745243 - . ID=CGI_10019300; scaffold363 TRF Tandem_Repeat 271417 272470 844 + . . scaffold363 GLEAN mRNA 276820 276934 0.745243 - . ID=CGI_10019300; scaffold363 TRF Tandem_Repeat 276820 276934 124 + . . scaffold363 GLEAN mRNA 277174 277266 0.745243 - . ID=CGI_10019300; scaffold363 TRF Tandem_Repeat 277174 277266 168 + . . scaffold363 GLEAN mRNA 277326 277381 0.745243 - . ID=CGI_10019300; scaffold363 TRF Tandem_Repeat 277326 277381 103 + . . scaffold363 GLEAN mRNA 277857 277983 0.745243 - . ID=CGI_10019300; scaffold363 TRF Tandem_Repeat 277857 277983 85 + . . scaffold363 GLEAN mRNA 276661 276813 0.745243 - . ID=CGI_10019300; scaffold363 WUBlastX DNA_Sola 276661 276813 106 - . . scaffold363 GLEAN mRNA 300734 300771 0.41723 + . ID=CGI_10019302; scaffold363 TRF Tandem_Repeat 300734 300771 51 + . . scaffold363 GLEAN mRNA 304329 304358 0.41723 + . ID=CGI_10019302; scaffold363 TRF Tandem_Repeat 304329 304358 51 + . . scaffold363 GLEAN mRNA 305029 305102 0.41723 + . ID=CGI_10019302; scaffold363 TRF Tandem_Repeat 305029 305102 130 + . . scaffold363 GLEAN mRNA 305315 305342 0.41723 + . ID=CGI_10019302; scaffold363 TRF Tandem_Repeat 305315 305342 56 + . . scaffold363 GLEAN mRNA 306193 306267 0.41723 + . ID=CGI_10019302; scaffold363 TRF Tandem_Repeat 306193 306267 150 + . . scaffold363 GLEAN mRNA 309934 310682 0.41723 + . ID=CGI_10019302; scaffold363 TRF Tandem_Repeat 309934 311235 1461 + . . scaffold363 GLEAN mRNA 300734 300771 0.999195 - . ID=CGI_10019303; scaffold363 TRF Tandem_Repeat 300734 300771 51 + . . scaffold363 GLEAN mRNA 304329 304358 0.999195 - . ID=CGI_10019303; scaffold363 TRF Tandem_Repeat 304329 304358 51 + . . scaffold363 GLEAN mRNA 305029 305102 0.999195 - . ID=CGI_10019303; scaffold363 TRF Tandem_Repeat 305029 305102 130 + . . scaffold363 GLEAN mRNA 305315 305342 0.999195 - . ID=CGI_10019303; scaffold363 TRF Tandem_Repeat 305315 305342 56 + . . scaffold363 GLEAN mRNA 306193 306267 0.999195 - . ID=CGI_10019303; scaffold363 TRF Tandem_Repeat 306193 306267 150 + . . scaffold363 GLEAN mRNA 426498 426851 0.999949 + . ID=CGI_10019306; scaffold363 WUBlastX DNA_Academ 426225 426989 363 + . . scaffold363 GLEAN mRNA 469015 470005 1 + . ID=CGI_10019308; scaffold363 TRF Tandem_Repeat 469015 470005 1505 + . . scaffold363 GLEAN mRNA 486075 486120 1 - . ID=CGI_10019309; scaffold363 TRF Tandem_Repeat 486075 486120 58 + . . scaffold363 GLEAN mRNA 486072 486125 1 - . ID=CGI_10019309; scaffold363 TRF Tandem_Repeat 486072 486125 58 + . . scaffold363 GLEAN mRNA 501393 501554 1 - . ID=CGI_10019310; scaffold363 WUBlastX LTR_Gypsy 501393 501554 29 - . . scaffold363 GLEAN mRNA 501291 501518 1 - . ID=CGI_10019310; scaffold363 WUBlastX LTR_Gypsy 501291 501518 54 - . . scaffold363 GLEAN mRNA 501162 501521 1 - . ID=CGI_10019310; scaffold363 WUBlastX LTR_Gypsy 501162 501521 44 - . . scaffold363 GLEAN mRNA 500928 501503 1 - . ID=CGI_10019310; scaffold363 WUBlastX LTR_Gypsy 500928 501503 22 - . . scaffold363 GLEAN mRNA 511867 511902 0.543882 + . ID=CGI_10019312; scaffold363 TRF Tandem_Repeat 511867 511902 72 + . . scaffold363 GLEAN mRNA 513312 513473 0.543882 + . ID=CGI_10019312; scaffold363 WUBlastX DNA_IS4EU 513312 513473 41 - . . scaffold363 GLEAN mRNA 514268 514591 0.543882 + . ID=CGI_10019312; scaffold363 WUBlastX DNA_IS4EU 514268 514591 108 - . . scaffold363 GLEAN mRNA 513339 513500 0.543882 + . ID=CGI_10019312; scaffold363 WUBlastX DNA_IS4EU 513339 513500 52 - . . scaffold363 GLEAN mRNA 550008 550043 0.83729 - . ID=CGI_10019313; scaffold363 TRF Tandem_Repeat 550008 550043 54 + . . scaffold363 GLEAN mRNA 563785 563818 0.999675 + . ID=CGI_10019314; scaffold363 TRF Tandem_Repeat 563785 563818 68 + . . scaffold363 GLEAN mRNA 580872 580925 0.839415 + . ID=CGI_10019315; scaffold363 TRF Tandem_Repeat 580872 580925 108 + . . scaffold363 GLEAN mRNA 573481 573741 0.839415 + . ID=CGI_10019315; scaffold363 WUBlastX LINE_Penelope 573481 573741 71 - . . scaffold402 GLEAN mRNA 24810 24864 0.81843 + . ID=CGI_10019317; scaffold402 TRF Tandem_Repeat 24810 24864 101 + . . scaffold402 GLEAN mRNA 39945 40002 0.81843 + . ID=CGI_10019317; scaffold402 TRF Tandem_Repeat 39945 40002 107 + . . scaffold402 GLEAN mRNA 42484 42522 0.81843 + . ID=CGI_10019317; scaffold402 TRF Tandem_Repeat 42484 42522 53 + . . scaffold402 GLEAN mRNA 167690 167729 0.72327 + . ID=CGI_10019321; scaffold402 TRF Tandem_Repeat 167690 167729 80 + . . scaffold402 GLEAN mRNA 168594 168639 0.72327 + . ID=CGI_10019321; scaffold402 TRF Tandem_Repeat 168594 168639 76 + . . scaffold402 GLEAN mRNA 168589 168642 0.72327 + . ID=CGI_10019321; scaffold402 TRF Tandem_Repeat 168589 168642 76 + . . scaffold402 GLEAN mRNA 181048 181094 0.72327 + . ID=CGI_10019321; scaffold402 TRF Tandem_Repeat 181048 181094 94 + . . scaffold402 GLEAN mRNA 182025 182061 0.72327 + . ID=CGI_10019321; scaffold402 TRF Tandem_Repeat 182025 182061 65 + . . scaffold402 GLEAN mRNA 225496 225558 0.715837 + . ID=CGI_10019322; scaffold402 TRF Tandem_Repeat 225496 225558 73 + . . scaffold402 GLEAN mRNA 225672 225697 0.715837 + . ID=CGI_10019322; scaffold402 TRF Tandem_Repeat 225672 225697 52 + . . scaffold402 GLEAN mRNA 225811 225879 0.715837 + . ID=CGI_10019322; scaffold402 TRF Tandem_Repeat 225811 225879 120 + . . scaffold402 GLEAN mRNA 290848 290901 0.995632 + . ID=CGI_10019324; scaffold402 TRF Tandem_Repeat 290848 290901 72 + . . scaffold402 GLEAN mRNA 295546 295583 0.995632 + . ID=CGI_10019324; scaffold402 TRF Tandem_Repeat 295546 295583 76 + . . scaffold402 GLEAN mRNA 295581 295614 0.995632 + . ID=CGI_10019324; scaffold402 TRF Tandem_Repeat 295581 295614 68 + . . scaffold402 GLEAN mRNA 296130 296164 0.995632 + . ID=CGI_10019324; scaffold402 TRF Tandem_Repeat 296130 296164 52 + . . scaffold402 GLEAN mRNA 296877 297017 0.995632 + . ID=CGI_10019324; scaffold402 TRF Tandem_Repeat 296877 297017 99 + . . scaffold402 GLEAN mRNA 297806 297914 0.995632 + . ID=CGI_10019324; scaffold402 TRF Tandem_Repeat 297806 297914 82 + . . scaffold402 GLEAN mRNA 308506 308544 0.995632 + . ID=CGI_10019324; scaffold402 TRF Tandem_Repeat 308506 308544 51 + . . scaffold402 GLEAN mRNA 310288 310317 0.995632 + . ID=CGI_10019324; scaffold402 TRF Tandem_Repeat 310288 310317 53 + . . scaffold402 GLEAN mRNA 350218 350426 0.998395 + . ID=CGI_10019325; scaffold402 TRF Tandem_Repeat 350218 350426 312 + . . scaffold402 GLEAN mRNA 356788 356823 0.998395 + . ID=CGI_10019325; scaffold402 TRF Tandem_Repeat 356788 356823 72 + . . scaffold402 GLEAN mRNA 362752 363551 0.998395 + . ID=CGI_10019325; scaffold402 TRF Tandem_Repeat 362752 363551 820 + . . scaffold402 GLEAN mRNA 370898 372427 0.998395 + . ID=CGI_10019325; scaffold402 TRF Tandem_Repeat 370898 372427 2263 + . . scaffold402 GLEAN mRNA 370898 372427 0.998395 + . ID=CGI_10019325; scaffold402 TRF Tandem_Repeat 370898 372427 2262 + . . scaffold402 GLEAN mRNA 373035 374003 0.998395 + . ID=CGI_10019325; scaffold402 TRF Tandem_Repeat 373035 374003 1749 + . . scaffold402 GLEAN mRNA 391244 391348 0.996653 - . ID=CGI_10019326; scaffold402 TRF Tandem_Repeat 391244 391348 103 + . . scaffold402 GLEAN mRNA 405369 406209 1 + . ID=CGI_10019327; scaffold402 TRF Tandem_Repeat 405369 406209 975 + . . scaffold402 GLEAN mRNA 418635 418679 1 + . ID=CGI_10019328; scaffold402 TRF Tandem_Repeat 418635 418679 90 + . . scaffold402 GLEAN mRNA 425110 425164 1 + . ID=CGI_10019328; scaffold402 TRF Tandem_Repeat 425110 425164 92 + . . scaffold402 GLEAN mRNA 425175 426012 1 + . ID=CGI_10019328; scaffold402 TRF Tandem_Repeat 425175 426012 1105 + . . scaffold402 GLEAN mRNA 447841 449133 0.996955 + . ID=CGI_10019329; scaffold402 TRF Tandem_Repeat 447841 449133 1794 + . . scaffold402 GLEAN mRNA 517505 517657 0.999749 + . ID=CGI_10019333; scaffold402 WUBlastX LINE_L1-Tx1 517505 517657 45 + . . scaffold402 GLEAN mRNA 517177 517326 0.999749 + . ID=CGI_10019333; scaffold402 WUBlastX LINE_L1 517177 517326 59 + . . scaffold402 GLEAN mRNA 517439 517660 0.999749 + . ID=CGI_10019333; scaffold402 WUBlastX LINE_L1-Tx1 517439 517660 40 + . . scaffold402 GLEAN mRNA 517662 517847 0.999749 + . ID=CGI_10019333; scaffold402 WUBlastX LINE_L1 517662 517847 77 + . . scaffold402 GLEAN mRNA 517219 517314 0.999749 + . ID=CGI_10019333; scaffold402 WUBlastX LINE_L1 517219 517314 65 + . . scaffold402 GLEAN mRNA 517674 517880 0.999749 + . ID=CGI_10019333; scaffold402 WUBlastX LINE_L1 517674 517880 26 + . . scaffold402 GLEAN mRNA 517328 517423 0.999749 + . ID=CGI_10019333; scaffold402 WUBlastX LINE_L1 517328 517423 24 + . . scaffold402 GLEAN mRNA 517629 517817 0.999749 + . ID=CGI_10019333; scaffold402 WUBlastX LINE_L1 517629 517817 66 + . . scaffold402 GLEAN mRNA 523747 524049 0.999749 + . ID=CGI_10019333; scaffold402 WUBlastX LINE_L1-Tx1 523747 524049 113 - . . scaffold402 GLEAN mRNA 523747 524109 0.999749 + . ID=CGI_10019333; scaffold402 WUBlastX LINE_L1-Tx1 523747 524109 82 - . . scaffold402 GLEAN mRNA 557142 557356 0.997192 - . ID=CGI_10019334; scaffold402 TRF Tandem_Repeat 557142 557356 326 + . . scaffold402 GLEAN mRNA 561801 562057 0.997192 - . ID=CGI_10019334; scaffold402 TRF Tandem_Repeat 561801 562057 245 + . . scaffold402 GLEAN mRNA 562404 563167 0.997192 - . ID=CGI_10019334; scaffold402 TRF Tandem_Repeat 562404 563167 846 + . . scaffold402 GLEAN mRNA 556689 557356 0.997192 - . ID=CGI_10019334; scaffold402 TRF Tandem_Repeat 556689 557356 322 + . . scaffold402 GLEAN mRNA 556689 557356 0.997192 - . ID=CGI_10019334; scaffold402 TRF Tandem_Repeat 556689 557356 773 + . . scaffold402 GLEAN mRNA 556753 557356 0.997192 - . ID=CGI_10019334; scaffold402 TRF Tandem_Repeat 556753 557356 645 + . . scaffold317 GLEAN mRNA 7479 7525 0.990181 + . ID=CGI_10019337; scaffold317 TRF Tandem_Repeat 7479 7525 94 + . . scaffold317 GLEAN mRNA 8374 8431 0.990181 + . ID=CGI_10019337; scaffold317 TRF Tandem_Repeat 8374 8431 109 + . . scaffold317 GLEAN mRNA 11080 11109 0.990181 + . ID=CGI_10019337; scaffold317 TRF Tandem_Repeat 11080 11109 51 + . . scaffold317 GLEAN mRNA 7841 8005 0.990181 + . ID=CGI_10019337; scaffold317 WUBlastX DNA_Kolobok-Hyd 7841 8005 20 + . . scaffold317 GLEAN mRNA 9332 9586 0.990181 + . ID=CGI_10019337; scaffold317 WUBlastX DNA_IS4EU 9332 9586 50 + . . scaffold317 GLEAN mRNA 9236 9577 0.990181 + . ID=CGI_10019337; scaffold317 WUBlastX DNA_Kolobok-Hyd 9236 9577 43 + . . scaffold317 GLEAN mRNA 17323 17392 0.990181 + . ID=CGI_10019337; scaffold317 TRF Tandem_Repeat 17323 17392 52 + . . scaffold317 GLEAN mRNA 63883 63958 0.654013 - . ID=CGI_10019339; scaffold317 TRF Tandem_Repeat 63883 63958 152 + . . scaffold317 GLEAN mRNA 99803 99840 0.813712 - . ID=CGI_10019340; scaffold317 TRF Tandem_Repeat 99803 99840 76 + . . scaffold317 GLEAN mRNA 108550 108571 0.998263 - . ID=CGI_10019342; scaffold317 WUBlastX DNA_Kolobok-Hyd 108014 108571 60 - . . scaffold317 GLEAN mRNA 112022 112058 0.986804 - . ID=CGI_10019343; scaffold317 TRF Tandem_Repeat 112022 112058 74 + . . scaffold317 GLEAN mRNA 112252 112313 0.986804 - . ID=CGI_10019343; scaffold317 TRF Tandem_Repeat 112252 112313 124 + . . scaffold317 GLEAN mRNA 111630 111686 0.986804 - . ID=CGI_10019343; scaffold317 WUBlastX DNA_Harbinger 111630 111686 25 + . . scaffold317 GLEAN mRNA 111682 111912 0.986804 - . ID=CGI_10019343; scaffold317 WUBlastX DNA_Harbinger 111682 111912 110 + . . scaffold317 GLEAN mRNA 115719 115847 0.989111 + . ID=CGI_10019344; scaffold317 WUBlastX LTR_Gypsy 115719 115847 24 + . . scaffold317 GLEAN mRNA 125173 125901 0.852803 + . ID=CGI_10019345; scaffold317 TRF Tandem_Repeat 125173 125901 1086 + . . scaffold317 GLEAN mRNA 125983 126030 0.852803 + . ID=CGI_10019345; scaffold317 TRF Tandem_Repeat 125983 126030 60 + . . scaffold317 GLEAN mRNA 136804 138024 0.852803 + . ID=CGI_10019345; scaffold317 WUBlastX DNA_hAT-hATw 136804 138024 362 + . . scaffold317 GLEAN mRNA 143756 143983 0.852803 + . ID=CGI_10019345; scaffold317 WUBlastX DNA_Sola 143756 143983 121 + . . scaffold317 GLEAN mRNA 135238 135354 0.852803 + . ID=CGI_10019345; scaffold317 WUBlastX DNA_hAT-hATw 135238 135354 36 + . . scaffold317 GLEAN mRNA 143977 144135 0.852803 + . ID=CGI_10019345; scaffold317 WUBlastX DNA_Sola 143977 144135 46 + . . scaffold317 GLEAN mRNA 135603 136250 0.852803 + . ID=CGI_10019345; scaffold317 WUBlastX DNA_hAT-hATw 135603 136250 39 + . . scaffold317 GLEAN mRNA 136250 136708 0.852803 + . ID=CGI_10019345; scaffold317 WUBlastX DNA_hAT-hATw 136250 136708 121 + . . scaffold317 GLEAN mRNA 149055 149144 0.992482 + . ID=CGI_10019346; scaffold317 WUBlastX LINE_L2 149055 149144 38 - . . scaffold317 GLEAN mRNA 157066 157096 0.520587 + . ID=CGI_10019347; scaffold317 TRF Tandem_Repeat 157066 157096 62 + . . scaffold317 GLEAN mRNA 159164 159307 0.520587 + . ID=CGI_10019347; scaffold317 WUBlastX DNA_Maverick 159164 159307 115 + . . scaffold317 GLEAN mRNA 158673 159209 0.520587 + . ID=CGI_10019347; scaffold317 WUBlastX DNA_Maverick 158673 159209 239 + . . scaffold317 GLEAN mRNA 203977 204017 0.755515 - . ID=CGI_10019348; scaffold317 TRF Tandem_Repeat 203977 204017 82 + . . scaffold317 GLEAN mRNA 206631 206939 0.755515 - . ID=CGI_10019348; scaffold317 WUBlastX DNA_Kolobok 206631 206939 33 - . . scaffold317 GLEAN mRNA 237555 237606 0.606028 + . ID=CGI_10019352; scaffold317 TRF Tandem_Repeat 237555 237606 95 + . . scaffold317 GLEAN mRNA 241010 241096 0.606028 + . ID=CGI_10019352; scaffold317 TRF Tandem_Repeat 241010 241096 86 + . . scaffold317 GLEAN mRNA 241023 241105 0.606028 + . ID=CGI_10019352; scaffold317 TRF Tandem_Repeat 241023 241105 51 + . . scaffold317 GLEAN mRNA 241121 241192 0.606028 + . ID=CGI_10019352; scaffold317 TRF Tandem_Repeat 241121 241192 74 + . . scaffold317 GLEAN mRNA 242515 243235 0.606028 + . ID=CGI_10019352; scaffold317 TRF Tandem_Repeat 242515 243235 973 + . . scaffold317 GLEAN mRNA 452322 452401 0.868328 - . ID=CGI_10019358; scaffold317 TRF Tandem_Repeat 452322 452401 114 + . . scaffold317 GLEAN mRNA 459702 459741 0.868328 - . ID=CGI_10019358; scaffold317 TRF Tandem_Repeat 459702 459741 53 + . . scaffold317 GLEAN mRNA 500226 500646 0.473225 - . ID=CGI_10019359; scaffold317 WUBlastX DNA_MuDR 499978 500646 98 - . . scaffold317 GLEAN mRNA 500226 500601 0.473225 - . ID=CGI_10019359; scaffold317 WUBlastX DNA_MuDR 500035 500601 116 - . . scaffold317 GLEAN mRNA 509021 509054 0.473225 - . ID=CGI_10019359; scaffold317 TRF Tandem_Repeat 509021 509054 68 + . . scaffold317 GLEAN mRNA 516983 517038 0.473225 - . ID=CGI_10019359; scaffold317 TRF Tandem_Repeat 516983 517038 105 + . . scaffold317 GLEAN mRNA 542786 542840 1 + . ID=CGI_10019360; scaffold317 TRF Tandem_Repeat 542786 542840 110 + . . scaffold317 GLEAN mRNA 570140 570573 0.98413 - . ID=CGI_10019362; scaffold317 TRF Tandem_Repeat 570140 570573 504 + . . scaffold317 GLEAN mRNA 569327 569626 0.98413 - . ID=CGI_10019362; scaffold317 WUBlastX LTR_Copia 569327 569626 24 - . . scaffold317 GLEAN mRNA 579487 579525 0.999298 + . ID=CGI_10019363; scaffold317 TRF Tandem_Repeat 579487 579525 69 + . . scaffold1698 GLEAN mRNA 22748 22854 0.919138 - . ID=CGI_10019364; scaffold1698 TRF Tandem_Repeat 22748 22854 133 + . . scaffold1698 GLEAN mRNA 67272 67320 0.688406 + . ID=CGI_10019365; scaffold1698 TRF Tandem_Repeat 67272 67320 89 + . . scaffold1698 GLEAN mRNA 81047 81451 0.994893 - . ID=CGI_10019366; scaffold1698 WUBlastX LTR_Gypsy 81047 81451 53 - . . scaffold1698 GLEAN mRNA 108329 108508 0.527953 - . ID=CGI_10019369; scaffold1698 TRF Tandem_Repeat 108329 108508 252 + . . scaffold1698 GLEAN mRNA 108329 108508 0.527953 - . ID=CGI_10019369; scaffold1698 TRF Tandem_Repeat 108329 108508 252 + . . scaffold1698 GLEAN mRNA 123134 123165 0.999999 + . ID=CGI_10019370; scaffold1698 TRF Tandem_Repeat 123134 123165 55 + . . scaffold1698 GLEAN mRNA 123380 124466 0.999999 + . ID=CGI_10019370; scaffold1698 TRF Tandem_Repeat 123380 124466 1348 + . . scaffold1698 GLEAN mRNA 122879 123010 0.999999 + . ID=CGI_10019370; scaffold1698 WUBlastX LINE_CR1-L2 122879 123010 69 + . . scaffold1698 GLEAN mRNA 122879 122986 0.999999 + . ID=CGI_10019370; scaffold1698 WUBlastX LINE_CR1-L2 122879 122986 69 + . . scaffold1698 GLEAN mRNA 125170 125613 0.999999 + . ID=CGI_10019370; scaffold1698 WUBlastX LINE_L2 125170 125613 102 + . . scaffold1698 GLEAN mRNA 125050 125613 0.999999 + . ID=CGI_10019370; scaffold1698 WUBlastX LINE_CR1-L2 125050 125613 91 + . . scaffold1698 GLEAN mRNA 131469 131526 1 - . ID=CGI_10019371; scaffold1698 TRF Tandem_Repeat 131469 131526 116 + . . scaffold1698 GLEAN mRNA 271626 271707 0.999473 - . ID=CGI_10019379; scaffold1698 TRF Tandem_Repeat 271626 271707 164 + . . scaffold1698 GLEAN mRNA 389458 389610 0.549917 + . ID=CGI_10019385; scaffold1698 WUBlastX DNA_Harbinger 389458 389610 62 + . . scaffold1698 GLEAN mRNA 429484 429513 0.763562 + . ID=CGI_10019386; scaffold1698 TRF Tandem_Repeat 429484 429513 60 + . . scaffold1698 GLEAN mRNA 453437 453463 0.953884 - . ID=CGI_10019387; scaffold1698 TRF Tandem_Repeat 453437 453463 54 + . . scaffold1698 GLEAN mRNA 453551 453584 0.953884 - . ID=CGI_10019387; scaffold1698 TRF Tandem_Repeat 453551 453584 68 + . . scaffold1698 GLEAN mRNA 457366 457610 0.953884 - . ID=CGI_10019387; scaffold1698 TRF Tandem_Repeat 457366 457610 427 + . . scaffold1698 GLEAN mRNA 462043 462095 0.953884 - . ID=CGI_10019387; scaffold1698 TRF Tandem_Repeat 462043 462095 88 + . . scaffold1698 GLEAN mRNA 467309 467456 0.953884 - . ID=CGI_10019387; scaffold1698 TRF Tandem_Repeat 467309 467456 197 + . . scaffold1698 GLEAN mRNA 467740 468119 0.953884 - . ID=CGI_10019387; scaffold1698 TRF Tandem_Repeat 467740 468119 627 + . . scaffold1698 GLEAN mRNA 470294 470770 0.953884 - . ID=CGI_10019387; scaffold1698 TRF Tandem_Repeat 470294 470770 226 + . . scaffold1698 GLEAN mRNA 470332 470647 0.953884 - . ID=CGI_10019387; scaffold1698 TRF Tandem_Repeat 470332 470647 120 + . . scaffold1698 GLEAN mRNA 470309 470456 0.953884 - . ID=CGI_10019387; scaffold1698 TRF Tandem_Repeat 470309 470456 109 + . . scaffold1698 GLEAN mRNA 470450 470684 0.953884 - . ID=CGI_10019387; scaffold1698 TRF Tandem_Repeat 470450 470684 362 + . . scaffold1698 GLEAN mRNA 470567 470770 0.953884 - . ID=CGI_10019387; scaffold1698 TRF Tandem_Repeat 470567 470770 211 + . . scaffold1698 GLEAN mRNA 472034 472068 0.953884 - . ID=CGI_10019387; scaffold1698 TRF Tandem_Repeat 472034 472068 61 + . . scaffold1698 GLEAN mRNA 480274 480530 0.998792 + . ID=CGI_10019388; scaffold1698 TRF Tandem_Repeat 480274 480530 279 + . . scaffold1698 GLEAN mRNA 480274 480527 0.998792 + . ID=CGI_10019388; scaffold1698 TRF Tandem_Repeat 480274 480527 273 + . . scaffold1698 GLEAN mRNA 482863 483685 0.998792 + . ID=CGI_10019388; scaffold1698 TRF Tandem_Repeat 482863 483685 928 + . . scaffold1698 GLEAN mRNA 486281 486768 0.998792 + . ID=CGI_10019388; scaffold1698 TRF Tandem_Repeat 486281 486768 442 + . . scaffold1698 GLEAN mRNA 504807 504966 0.638313 + . ID=CGI_10019389; scaffold1698 TRF Tandem_Repeat 504807 504966 212 + . . scaffold1698 GLEAN mRNA 504784 504966 0.638313 + . ID=CGI_10019389; scaffold1698 TRF Tandem_Repeat 504784 504966 296 + . . scaffold1698 GLEAN mRNA 505533 505578 0.638313 + . ID=CGI_10019389; scaffold1698 TRF Tandem_Repeat 505533 505578 92 + . . scaffold1698 GLEAN mRNA 510885 510927 0.638313 + . ID=CGI_10019389; scaffold1698 TRF Tandem_Repeat 510885 510927 86 + . . scaffold1698 GLEAN mRNA 509319 509702 0.638313 + . ID=CGI_10019389; scaffold1698 WUBlastX DNA_Sola 509319 509702 47 + . . scaffold1698 GLEAN mRNA 510429 510563 0.638313 + . ID=CGI_10019389; scaffold1698 WUBlastX DNA_Sola 510429 510563 30 + . . scaffold1698 GLEAN mRNA 509685 509828 0.638313 + . ID=CGI_10019389; scaffold1698 WUBlastX DNA_Sola 509685 509828 68 + . . scaffold1698 GLEAN mRNA 518164 518280 0.995153 + . ID=CGI_10019390; scaffold1698 TRF Tandem_Repeat 518164 518280 92 + . . scaffold1698 GLEAN mRNA 518413 518638 0.995153 + . ID=CGI_10019390; scaffold1698 TRF Tandem_Repeat 518413 518638 136 + . . scaffold1698 GLEAN mRNA 518453 518649 0.995153 + . ID=CGI_10019390; scaffold1698 TRF Tandem_Repeat 518453 518649 218 + . . scaffold1698 GLEAN mRNA 525768 525823 0.995153 + . ID=CGI_10019390; scaffold1698 TRF Tandem_Repeat 525768 525823 112 + . . scaffold1698 GLEAN mRNA 527338 527442 0.995153 + . ID=CGI_10019390; scaffold1698 TRF Tandem_Repeat 527338 527442 93 + . . scaffold1698 GLEAN mRNA 524181 524297 0.995153 + . ID=CGI_10019390; scaffold1698 TRF Tandem_Repeat 524181 524297 171 + . . scaffold1698 GLEAN mRNA 524184 524311 0.995153 + . ID=CGI_10019390; scaffold1698 TRF Tandem_Repeat 524184 524311 143 + . . scaffold1698 GLEAN mRNA 540817 541564 1 + . ID=CGI_10019391; scaffold1698 TRF Tandem_Repeat 540817 541564 912 + . . scaffold1698 GLEAN mRNA 555188 556096 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_RTE-X 555188 556096 57 + . . scaffold1698 GLEAN mRNA 556465 556584 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_RTE-X 556465 556584 22 + . . scaffold1698 GLEAN mRNA 556620 556757 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_RTE-X 556620 556757 43 + . . scaffold1698 GLEAN mRNA 556772 557020 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_RTE-X 556772 557020 27 + . . scaffold1698 GLEAN mRNA 555503 556090 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_RTE-X 555503 556090 67 + . . scaffold1698 GLEAN mRNA 558800 559120 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_Penelope 558800 559120 82 - . . scaffold1698 GLEAN mRNA 558782 559057 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_Penelope 558782 559057 83 - . . scaffold1698 GLEAN mRNA 558674 559171 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_Penelope 558674 559171 59 - . . scaffold377 GLEAN mRNA 118739 118791 0.593391 + . ID=CGI_10019401; scaffold377 TRF Tandem_Repeat 118739 118791 106 + . . scaffold377 GLEAN mRNA 128123 128380 0.999344 - . ID=CGI_10019402; scaffold377 TRF Tandem_Repeat 128123 128380 336 + . . scaffold377 GLEAN mRNA 141854 142091 0.80154 - . ID=CGI_10019404; scaffold377 TRF Tandem_Repeat 141854 142091 431 + . . scaffold377 GLEAN mRNA 143580 143616 0.80154 - . ID=CGI_10019404; scaffold377 TRF Tandem_Repeat 143580 143616 65 + . . scaffold377 GLEAN mRNA 143727 143897 0.80154 - . ID=CGI_10019404; scaffold377 WUBlastX LINE_RTE-X 143727 143897 30 + . . scaffold377 GLEAN mRNA 144775 144953 0.80154 - . ID=CGI_10019404; scaffold377 WUBlastX LINE_L1-Tx1 144775 145173 24 + . . scaffold377 GLEAN mRNA 143820 143957 0.80154 - . ID=CGI_10019404; scaffold377 WUBlastX LINE_RTE-X 143820 143957 35 + . . scaffold377 GLEAN mRNA 247890 248058 0.795952 + . ID=CGI_10019408; scaffold377 TRF Tandem_Repeat 247890 248058 243 + . . scaffold377 GLEAN mRNA 248189 248410 0.795952 + . ID=CGI_10019408; scaffold377 TRF Tandem_Repeat 248189 248410 322 + . . scaffold377 GLEAN mRNA 319127 319294 0.547309 - . ID=CGI_10019410; scaffold377 TRF Tandem_Repeat 319127 319294 84 + . . scaffold377 GLEAN mRNA 320085 320123 0.547309 - . ID=CGI_10019410; scaffold377 TRF Tandem_Repeat 320085 320123 78 + . . scaffold377 GLEAN mRNA 362782 362926 0.996972 - . ID=CGI_10019412; scaffold377 TRF Tandem_Repeat 362782 362926 206 + . . scaffold377 GLEAN mRNA 370105 370329 0.996972 - . ID=CGI_10019412; scaffold377 TRF Tandem_Repeat 370105 370329 299 + . . scaffold377 GLEAN mRNA 526004 526065 0.999084 - . ID=CGI_10019420; scaffold377 TRF Tandem_Repeat 526004 526065 124 + . . scaffold445 GLEAN mRNA 5677 6637 0.999975 - . ID=CGI_10019421; scaffold445 TRF Tandem_Repeat 5677 6637 1412 + . . scaffold445 GLEAN mRNA 6668 6703 0.999975 - . ID=CGI_10019421; scaffold445 TRF Tandem_Repeat 6668 6703 63 + . . scaffold445 GLEAN mRNA 13834 14083 0.998042 - . ID=CGI_10019422; scaffold445 TRF Tandem_Repeat 13834 14083 92 + . . scaffold445 GLEAN mRNA 14986 15752 0.998042 - . ID=CGI_10019422; scaffold445 TRF Tandem_Repeat 14986 15752 912 + . . scaffold445 GLEAN mRNA 19271 19381 0.998042 - . ID=CGI_10019422; scaffold445 TRF Tandem_Repeat 19271 19381 120 + . . scaffold445 GLEAN mRNA 19391 19601 0.998042 - . ID=CGI_10019422; scaffold445 TRF Tandem_Repeat 19391 19601 323 + . . scaffold445 GLEAN mRNA 47211 47237 0.911407 - . ID=CGI_10019427; scaffold445 TRF Tandem_Repeat 47211 47237 54 + . . scaffold445 GLEAN mRNA 49089 49144 0.911407 - . ID=CGI_10019427; scaffold445 TRF Tandem_Repeat 49089 49144 53 + . . scaffold445 GLEAN mRNA 150374 150425 0.999676 - . ID=CGI_10019429; scaffold445 TRF Tandem_Repeat 150374 150425 104 + . . scaffold445 GLEAN mRNA 162146 162690 0.702385 - . ID=CGI_10019430; scaffold445 TRF Tandem_Repeat 162146 162690 624 + . . scaffold445 GLEAN mRNA 162174 162690 0.702385 - . ID=CGI_10019430; scaffold445 TRF Tandem_Repeat 162174 162690 705 + . . scaffold445 GLEAN mRNA 162174 162690 0.702385 - . ID=CGI_10019430; scaffold445 TRF Tandem_Repeat 162174 162690 748 + . . scaffold445 GLEAN mRNA 162146 162690 0.500104 + . ID=CGI_10019431; scaffold445 TRF Tandem_Repeat 162146 162690 624 + . . scaffold445 GLEAN mRNA 162174 162690 0.500104 + . ID=CGI_10019431; scaffold445 TRF Tandem_Repeat 162174 162690 705 + . . scaffold445 GLEAN mRNA 162174 162690 0.500104 + . ID=CGI_10019431; scaffold445 TRF Tandem_Repeat 162174 162690 748 + . . scaffold445 GLEAN mRNA 173372 173611 0.500104 + . ID=CGI_10019431; scaffold445 WUBlastX LINE_RTE-X 173372 173611 57 - . . scaffold445 GLEAN mRNA 173303 173629 0.500104 + . ID=CGI_10019431; scaffold445 WUBlastX LINE_RTE-X 173303 173629 30 - . . scaffold445 GLEAN mRNA 174015 174257 0.500104 + . ID=CGI_10019431; scaffold445 WUBlastX DNA_Kolobok 174015 174257 60 + . . scaffold445 GLEAN mRNA 174926 175063 0.500104 + . ID=CGI_10019431; scaffold445 WUBlastX DNA_Kolobok 174926 175063 21 + . . scaffold445 GLEAN mRNA 173438 173665 0.500104 + . ID=CGI_10019431; scaffold445 WUBlastX LINE_RTE-X 173438 173665 37 - . . scaffold445 GLEAN mRNA 173372 173611 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX LINE_RTE-X 173372 173611 57 - . . scaffold445 GLEAN mRNA 173303 173629 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX LINE_RTE-X 173303 173629 30 - . . scaffold445 GLEAN mRNA 174015 174257 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX DNA_Kolobok 174015 174257 60 + . . scaffold445 GLEAN mRNA 174926 175063 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX DNA_Kolobok 174926 175063 21 + . . scaffold445 GLEAN mRNA 173438 173665 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX LINE_RTE-X 173438 173665 37 - . . scaffold445 GLEAN mRNA 198720 198903 0.999676 - . ID=CGI_10019435; scaffold445 TRF Tandem_Repeat 198720 198903 228 + . . scaffold445 GLEAN mRNA 198944 198984 0.999676 - . ID=CGI_10019435; scaffold445 TRF Tandem_Repeat 198944 198984 82 + . . scaffold445 GLEAN mRNA 200500 200836 0.999676 - . ID=CGI_10019435; scaffold445 TRF Tandem_Repeat 200500 200836 579 + . . scaffold445 GLEAN mRNA 204408 204655 0.999676 - . ID=CGI_10019435; scaffold445 TRF Tandem_Repeat 204408 204655 241 + . . scaffold445 GLEAN mRNA 205779 205809 0.999676 - . ID=CGI_10019435; scaffold445 TRF Tandem_Repeat 205779 205809 62 + . . scaffold445 GLEAN mRNA 205877 205918 0.999676 - . ID=CGI_10019435; scaffold445 TRF Tandem_Repeat 205877 205918 77 + . . scaffold445 GLEAN mRNA 208030 208069 0.999676 - . ID=CGI_10019435; scaffold445 TRF Tandem_Repeat 208030 208069 80 + . . scaffold445 GLEAN mRNA 249419 249463 1 + . ID=CGI_10019439; scaffold445 TRF Tandem_Repeat 249419 249463 90 + . . scaffold445 GLEAN mRNA 313910 314011 0.811094 - . ID=CGI_10019444; scaffold445 TRF Tandem_Repeat 313910 314011 159 + . . scaffold445 GLEAN mRNA 315207 315260 0.811094 - . ID=CGI_10019444; scaffold445 TRF Tandem_Repeat 315207 315260 108 + . . scaffold445 GLEAN mRNA 318626 318670 0.811094 - . ID=CGI_10019444; scaffold445 TRF Tandem_Repeat 318626 318670 81 + . . scaffold445 GLEAN mRNA 324237 324596 0.811094 - . ID=CGI_10019444; scaffold445 WUBlastX LINE_R2-Hero 324237 324596 64 + . . scaffold445 GLEAN mRNA 324240 324512 0.811094 - . ID=CGI_10019444; scaffold445 WUBlastX LINE_R2-Hero 324240 324512 67 + . . scaffold445 GLEAN mRNA 321126 321326 0.811094 - . ID=CGI_10019444; scaffold445 WUBlastX LTR_Gypsy 321126 321326 61 - . . scaffold445 GLEAN mRNA 321093 321467 0.811094 - . ID=CGI_10019444; scaffold445 WUBlastX LTR_Gypsy-Cigr 321093 321467 39 - . . scaffold445 GLEAN mRNA 329506 329550 0.811094 - . ID=CGI_10019444; scaffold445 TRF Tandem_Repeat 329506 329550 76 + . . scaffold445 GLEAN mRNA 329505 329548 0.811094 - . ID=CGI_10019444; scaffold445 TRF Tandem_Repeat 329505 329548 70 + . . scaffold445 GLEAN mRNA 336080 336120 0.811094 - . ID=CGI_10019444; scaffold445 TRF Tandem_Repeat 336080 336120 82 + . . scaffold445 GLEAN mRNA 345827 345888 0.980388 + . ID=CGI_10019446; scaffold445 TRF Tandem_Repeat 345827 345888 117 + . . scaffold445 GLEAN mRNA 364373 364941 0.927273 - . ID=CGI_10019447; scaffold445 TRF Tandem_Repeat 364373 364941 221 + . . scaffold445 GLEAN mRNA 364656 364943 0.927273 - . ID=CGI_10019447; scaffold445 TRF Tandem_Repeat 364656 364943 227 + . . scaffold445 GLEAN mRNA 375393 375437 1 + . ID=CGI_10019448; scaffold445 TRF Tandem_Repeat 375393 375437 90 + . . scaffold445 GLEAN mRNA 425556 425613 0.609844 - . ID=CGI_10019449; scaffold445 TRF Tandem_Repeat 425556 425613 116 + . . scaffold445 GLEAN mRNA 448976 449018 0.999938 - . ID=CGI_10019450; scaffold445 TRF Tandem_Repeat 448976 449018 86 + . . scaffold445 GLEAN mRNA 525974 526034 0.55721 - . ID=CGI_10019451; scaffold445 TRF Tandem_Repeat 525974 526034 106 + . . scaffold445 GLEAN mRNA 583889 583950 0.998384 + . ID=CGI_10019458; scaffold445 TRF Tandem_Repeat 583889 583950 115 + . . scaffold1322 GLEAN mRNA 11441 11495 0.962166 - . ID=CGI_10019460; scaffold1322 TRF Tandem_Repeat 11441 11495 110 + . . scaffold1322 GLEAN mRNA 71604 71764 0.99372 + . ID=CGI_10019462; scaffold1322 TRF Tandem_Repeat 71604 71764 234 + . . scaffold1322 GLEAN mRNA 71634 71737 0.99372 + . ID=CGI_10019462; scaffold1322 TRF Tandem_Repeat 71634 71737 51 + . . scaffold1322 GLEAN mRNA 174917 174976 0.754735 + . ID=CGI_10019465; scaffold1322 TRF Tandem_Repeat 174917 174976 75 + . . scaffold1322 GLEAN mRNA 175262 175297 0.754735 + . ID=CGI_10019465; scaffold1322 TRF Tandem_Repeat 175262 175297 63 + . . scaffold1322 GLEAN mRNA 175365 175417 0.754735 + . ID=CGI_10019465; scaffold1322 TRF Tandem_Repeat 175365 175417 61 + . . scaffold1322 GLEAN mRNA 175740 175772 0.754735 + . ID=CGI_10019465; scaffold1322 TRF Tandem_Repeat 175740 175772 66 + . . scaffold1322 GLEAN mRNA 175764 175907 0.754735 + . ID=CGI_10019465; scaffold1322 TRF Tandem_Repeat 175764 175907 93 + . . scaffold1322 GLEAN mRNA 175774 175904 0.754735 + . ID=CGI_10019465; scaffold1322 TRF Tandem_Repeat 175774 175904 79 + . . scaffold1322 GLEAN mRNA 195180 195335 0.871492 + . ID=CGI_10019467; scaffold1322 WUBlastX LINE_RTE-X 195180 195335 48 - . . scaffold1322 GLEAN mRNA 212916 212961 0.986206 - . ID=CGI_10019470; scaffold1322 TRF Tandem_Repeat 212916 212961 92 + . . scaffold1322 GLEAN mRNA 270360 270824 0.499623 + . ID=CGI_10019472; scaffold1322 WUBlastX LTR_Gypsy 270360 270824 123 + . . scaffold1322 GLEAN mRNA 269916 270824 0.499623 + . ID=CGI_10019472; scaffold1322 WUBlastX LTR_Gypsy 269916 270824 47 + . . scaffold1322 GLEAN mRNA 270078 270824 0.499623 + . ID=CGI_10019472; scaffold1322 WUBlastX LTR_Gypsy 270078 270824 76 + . . scaffold1322 GLEAN mRNA 270294 270842 0.499623 + . ID=CGI_10019472; scaffold1322 WUBlastX LTR_Gypsy-Cigr 270294 270842 120 + . . scaffold1322 GLEAN mRNA 267480 267776 0.499623 + . ID=CGI_10019472; scaffold1322 WUBlastX LINE_RTE-X 267480 267776 23 - . . scaffold1322 GLEAN mRNA 267513 267695 0.499623 + . ID=CGI_10019472; scaffold1322 WUBlastX LINE_RTE-X 267513 267695 30 - . . scaffold1322 GLEAN mRNA 280893 281852 0.499623 + . ID=CGI_10019472; scaffold1322 TRF Tandem_Repeat 280893 281852 1385 + . . scaffold1322 GLEAN mRNA 285353 285392 0.499623 + . ID=CGI_10019472; scaffold1322 TRF Tandem_Repeat 285353 285392 52 + . . scaffold1322 GLEAN mRNA 285400 286200 0.499623 + . ID=CGI_10019472; scaffold1322 TRF Tandem_Repeat 285400 286200 1039 + . . scaffold1322 GLEAN mRNA 290757 291145 0.499623 + . ID=CGI_10019472; scaffold1322 TRF Tandem_Repeat 290757 291145 698 + . . scaffold1322 GLEAN mRNA 301264 301572 0.499623 + . ID=CGI_10019472; scaffold1322 WUBlastX LTR_Ngaro 301264 301572 71 - . . scaffold1322 GLEAN mRNA 301070 301465 0.499623 + . ID=CGI_10019472; scaffold1322 WUBlastX LTR_Ngaro 301070 301465 97 - . . scaffold1322 GLEAN mRNA 300080 300526 0.499623 + . ID=CGI_10019472; scaffold1322 WUBlastX LTR_Ngaro 300080 300526 250 - . . scaffold1322 GLEAN mRNA 301037 301159 0.499623 + . ID=CGI_10019472; scaffold1322 WUBlastX LTR_Ngaro 301037 301159 50 - . . scaffold1322 GLEAN mRNA 299932 300048 0.499623 + . ID=CGI_10019472; scaffold1322 WUBlastX LTR_Ngaro 299932 300048 49 - . . scaffold1322 GLEAN mRNA 298915 299025 0.499623 + . ID=CGI_10019472; scaffold1322 WUBlastX LTR_Ngaro 298915 299025 69 - . . scaffold1322 GLEAN mRNA 327454 327504 0.999369 - . ID=CGI_10019473; scaffold1322 TRF Tandem_Repeat 327454 327504 95 + . . scaffold1322 GLEAN mRNA 327746 327810 0.999369 - . ID=CGI_10019473; scaffold1322 TRF Tandem_Repeat 327746 327810 130 + . . scaffold1322 GLEAN mRNA 370251 370309 0.833191 + . ID=CGI_10019476; scaffold1322 TRF Tandem_Repeat 370251 370309 118 + . . scaffold1322 GLEAN mRNA 368649 368735 0.833191 + . ID=CGI_10019476; scaffold1322 WUBlastX LINE_RTE-BovB 368649 368735 48 - . . scaffold1322 GLEAN mRNA 368622 368834 0.833191 + . ID=CGI_10019476; scaffold1322 WUBlastX LINE_RTE-X 368622 368834 26 - . . scaffold1322 GLEAN mRNA 366937 368628 0.833191 + . ID=CGI_10019476; scaffold1322 WUBlastX LINE_RTE-X 366937 368628 612 - . . scaffold1322 GLEAN mRNA 368634 368750 0.833191 + . ID=CGI_10019476; scaffold1322 WUBlastX LINE_RTE-X 368634 368750 46 - . . scaffold1322 GLEAN mRNA 407979 408200 0.999229 - . ID=CGI_10019477; scaffold1322 WUBlastX LTR_Pao 407979 408200 80 - . . scaffold1322 GLEAN mRNA 408846 409376 0.999229 - . ID=CGI_10019477; scaffold1322 WUBlastX LTR_Pao 408846 409445 36 - . . scaffold1322 GLEAN mRNA 405670 408018 0.999229 - . ID=CGI_10019477; scaffold1322 WUBlastX LTR_Pao 405670 408018 1394 - . . scaffold1322 GLEAN mRNA 408233 408436 0.999229 - . ID=CGI_10019477; scaffold1322 WUBlastX LTR_Pao 408233 408436 39 - . . scaffold1322 GLEAN mRNA 408951 409178 0.999229 - . ID=CGI_10019477; scaffold1322 WUBlastX LTR_Pao 408951 409178 119 - . . scaffold1322 GLEAN mRNA 408242 408406 0.999229 - . ID=CGI_10019477; scaffold1322 WUBlastX LTR_Pao 408242 408406 46 - . . scaffold1322 GLEAN mRNA 409177 409376 0.999229 - . ID=CGI_10019477; scaffold1322 WUBlastX LTR_Pao 409177 409863 91 - . . scaffold1322 GLEAN mRNA 433192 433226 0.958613 - . ID=CGI_10019478; scaffold1322 TRF Tandem_Repeat 433192 433226 63 + . . scaffold1322 GLEAN mRNA 463490 463570 1 + . ID=CGI_10019481; scaffold1322 WUBlastX DNA_IS4EU 463490 463570 49 + . . scaffold1322 GLEAN mRNA 477702 477905 0.810694 - . ID=CGI_10019482; scaffold1322 WUBlastX DNA_P 477702 477905 48 - . . scaffold1322 GLEAN mRNA 478325 478363 0.810694 - . ID=CGI_10019482; scaffold1322 WUBlastX DNA_P 478325 478363 21 - . . scaffold1322 GLEAN mRNA 533806 533834 0.581946 + . ID=CGI_10019483; scaffold1322 TRF Tandem_Repeat 533806 533834 58 + . . scaffold1322 GLEAN mRNA 536167 536477 0.581946 + . ID=CGI_10019483; scaffold1322 TRF Tandem_Repeat 536167 536477 257 + . . scaffold1322 GLEAN mRNA 536167 536452 0.581946 + . ID=CGI_10019483; scaffold1322 TRF Tandem_Repeat 536167 536452 317 + . . scaffold1322 GLEAN mRNA 578876 578940 0.999351 - . ID=CGI_10019486; scaffold1322 TRF Tandem_Repeat 578876 578940 85 + . . scaffold1322 GLEAN mRNA 587512 587613 0.999351 - . ID=CGI_10019486; scaffold1322 WUBlastX LTR_Ngaro 587512 587613 41 - . . scaffold1322 GLEAN mRNA 588850 589128 0.999351 - . ID=CGI_10019486; scaffold1322 WUBlastX LTR_Ngaro 588850 589128 49 - . . scaffold1322 GLEAN mRNA 588359 588862 0.999351 - . ID=CGI_10019486; scaffold1322 WUBlastX LTR_Ngaro 588359 588862 189 - . . scaffold1322 GLEAN mRNA 587851 588180 0.999351 - . ID=CGI_10019486; scaffold1322 WUBlastX LTR_Ngaro 587851 588180 78 - . . scaffold1322 GLEAN mRNA 588288 588494 0.999351 - . ID=CGI_10019486; scaffold1322 WUBlastX LTR_Ngaro 588288 588494 34 - . . scaffold1322 GLEAN mRNA 589444 590124 0.999351 - . ID=CGI_10019486; scaffold1322 WUBlastX LTR_Ngaro 589444 590124 63 - . . scaffold376 GLEAN mRNA 31117 31171 0.495296 + . ID=CGI_10019491; scaffold376 TRF Tandem_Repeat 31117 31171 101 + . . scaffold376 GLEAN mRNA 31220 31266 0.495296 + . ID=CGI_10019491; scaffold376 TRF Tandem_Repeat 31220 31266 85 + . . scaffold376 GLEAN mRNA 35535 35575 0.495296 + . ID=CGI_10019491; scaffold376 TRF Tandem_Repeat 35535 35575 75 + . . scaffold376 GLEAN mRNA 36958 36992 0.495296 + . ID=CGI_10019491; scaffold376 TRF Tandem_Repeat 36958 36992 70 + . . scaffold376 GLEAN mRNA 46617 46655 0.495296 + . ID=CGI_10019491; scaffold376 TRF Tandem_Repeat 46617 46655 78 + . . scaffold376 GLEAN mRNA 50720 50779 0.495296 + . ID=CGI_10019491; scaffold376 TRF Tandem_Repeat 50720 50779 104 + . . scaffold376 GLEAN mRNA 60627 60665 0.495296 + . ID=CGI_10019491; scaffold376 TRF Tandem_Repeat 60627 60665 69 + . . scaffold376 GLEAN mRNA 74551 74663 0.864748 - . ID=CGI_10019492; scaffold376 TRF Tandem_Repeat 74551 74663 118 + . . scaffold376 GLEAN mRNA 74601 74663 0.864748 - . ID=CGI_10019492; scaffold376 TRF Tandem_Repeat 74601 74663 54 + . . scaffold376 GLEAN mRNA 100700 100740 0.870785 - . ID=CGI_10019493; scaffold376 TRF Tandem_Repeat 100700 100740 55 + . . scaffold376 GLEAN mRNA 103936 104729 0.870785 - . ID=CGI_10019493; scaffold376 TRF Tandem_Repeat 103936 104729 1156 + . . scaffold376 GLEAN mRNA 218046 218094 0.999676 - . ID=CGI_10019497; scaffold376 TRF Tandem_Repeat 218046 218094 98 + . . scaffold376 GLEAN mRNA 220640 220677 0.999676 - . ID=CGI_10019497; scaffold376 TRF Tandem_Repeat 220640 220677 76 + . . scaffold376 GLEAN mRNA 305025 305293 0.982307 + . ID=CGI_10019505; scaffold376 TRF Tandem_Repeat 305025 305293 160 + . . scaffold376 GLEAN mRNA 305026 305293 0.982307 + . ID=CGI_10019505; scaffold376 TRF Tandem_Repeat 305026 305293 208 + . . scaffold376 GLEAN mRNA 309230 309306 0.982307 + . ID=CGI_10019505; scaffold376 TRF Tandem_Repeat 309230 309306 145 + . . scaffold376 GLEAN mRNA 311609 311660 0.982307 + . ID=CGI_10019505; scaffold376 TRF Tandem_Repeat 311609 311660 97 + . . scaffold376 GLEAN mRNA 311664 311702 0.982307 + . ID=CGI_10019505; scaffold376 TRF Tandem_Repeat 311664 311702 78 + . . scaffold376 GLEAN mRNA 315254 315305 0.982307 + . ID=CGI_10019505; scaffold376 TRF Tandem_Repeat 315254 315305 104 + . . scaffold376 GLEAN mRNA 352216 352297 0.996974 - . ID=CGI_10019508; scaffold376 TRF Tandem_Repeat 352216 352297 56 + . . scaffold376 GLEAN mRNA 352216 352378 0.996974 - . ID=CGI_10019508; scaffold376 TRF Tandem_Repeat 352216 352378 69 + . . scaffold376 GLEAN mRNA 352388 352530 0.996974 - . ID=CGI_10019508; scaffold376 TRF Tandem_Repeat 352388 352530 150 + . . scaffold376 GLEAN mRNA 376717 376781 1 + . ID=CGI_10019510; scaffold376 TRF Tandem_Repeat 376717 376781 121 + . . scaffold376 GLEAN mRNA 380106 380148 1 + . ID=CGI_10019510; scaffold376 TRF Tandem_Repeat 380106 380148 59 + . . scaffold376 GLEAN mRNA 382551 382617 1 + . ID=CGI_10019510; scaffold376 TRF Tandem_Repeat 382551 382617 134 + . . scaffold376 GLEAN mRNA 390343 390430 0.499771 + . ID=CGI_10019511; scaffold376 TRF Tandem_Repeat 390343 390430 176 + . . scaffold376 GLEAN mRNA 391578 391651 0.499771 + . ID=CGI_10019511; scaffold376 TRF Tandem_Repeat 391578 391651 57 + . . scaffold376 GLEAN mRNA 391564 391651 0.499771 + . ID=CGI_10019511; scaffold376 TRF Tandem_Repeat 391564 391651 85 + . . scaffold376 GLEAN mRNA 391564 391651 0.499771 + . ID=CGI_10019511; scaffold376 TRF Tandem_Repeat 391564 391651 51 + . . scaffold376 GLEAN mRNA 391564 391651 0.499771 + . ID=CGI_10019511; scaffold376 TRF Tandem_Repeat 391564 391651 97 + . . scaffold376 GLEAN mRNA 392785 392851 0.499771 + . ID=CGI_10019511; scaffold376 TRF Tandem_Repeat 392785 392851 91 + . . scaffold376 GLEAN mRNA 394499 394547 0.499771 + . ID=CGI_10019511; scaffold376 TRF Tandem_Repeat 394499 394547 89 + . . scaffold376 GLEAN mRNA 463960 464165 1 + . ID=CGI_10019513; scaffold376 TRF Tandem_Repeat 463960 464165 369 + . . scaffold376 GLEAN mRNA 484068 484184 1 - . ID=CGI_10019515; scaffold376 TRF Tandem_Repeat 484068 484184 110 + . . scaffold376 GLEAN mRNA 484470 484641 1 - . ID=CGI_10019515; scaffold376 TRF Tandem_Repeat 484470 484641 148 + . . scaffold376 GLEAN mRNA 528614 528752 0.52974 - . ID=CGI_10019517; scaffold376 TRF Tandem_Repeat 528614 528752 154 + . . scaffold376 GLEAN mRNA 546769 546817 0.999676 - . ID=CGI_10019519; scaffold376 TRF Tandem_Repeat 546769 546817 98 + . . scaffold376 GLEAN mRNA 548871 549096 0.999676 - . ID=CGI_10019519; scaffold376 TRF Tandem_Repeat 548871 549096 416 + . . scaffold376 GLEAN mRNA 549094 549614 0.999676 - . ID=CGI_10019519; scaffold376 TRF Tandem_Repeat 549094 549614 943 + . . scaffold376 GLEAN mRNA 550732 551110 0.999676 - . ID=CGI_10019519; scaffold376 TRF Tandem_Repeat 550732 551110 200 + . . scaffold376 GLEAN mRNA 550839 551109 0.999676 - . ID=CGI_10019519; scaffold376 TRF Tandem_Repeat 550839 551109 156 + . . scaffold376 GLEAN mRNA 551018 551292 0.999676 - . ID=CGI_10019519; scaffold376 TRF Tandem_Repeat 551018 551292 199 + . . scaffold376 GLEAN mRNA 551018 551292 0.999676 - . ID=CGI_10019519; scaffold376 TRF Tandem_Repeat 551018 551292 271 + . . scaffold1763 GLEAN mRNA 12539 12626 0.444448 - . ID=CGI_10019524; scaffold1763 TRF Tandem_Repeat 12539 12626 86 + . . scaffold1763 GLEAN mRNA 39689 39752 0.990076 + . ID=CGI_10019526; scaffold1763 TRF Tandem_Repeat 39689 39752 67 + . . scaffold1763 GLEAN mRNA 54969 55078 0.990076 + . ID=CGI_10019526; scaffold1763 TRF Tandem_Repeat 54969 55078 97 + . . scaffold1763 GLEAN mRNA 57044 57078 0.990076 + . ID=CGI_10019526; scaffold1763 TRF Tandem_Repeat 57044 57078 61 + . . scaffold1763 GLEAN mRNA 66090 66258 0.990076 + . ID=CGI_10019526; scaffold1763 TRF Tandem_Repeat 66090 66258 74 + . . scaffold1763 GLEAN mRNA 68072 68097 0.990076 + . ID=CGI_10019526; scaffold1763 TRF Tandem_Repeat 68072 68097 52 + . . scaffold1763 GLEAN mRNA 95218 95261 0.999893 + . ID=CGI_10019527; scaffold1763 TRF Tandem_Repeat 95218 95261 79 + . . scaffold1763 GLEAN mRNA 97369 97415 0.999893 + . ID=CGI_10019527; scaffold1763 TRF Tandem_Repeat 97369 97415 94 + . . scaffold1763 GLEAN mRNA 100314 100341 0.999893 + . ID=CGI_10019527; scaffold1763 TRF Tandem_Repeat 100314 100341 56 + . . scaffold1763 GLEAN mRNA 165661 165706 0.996036 + . ID=CGI_10019530; scaffold1763 TRF Tandem_Repeat 165661 165706 74 + . . scaffold1763 GLEAN mRNA 173756 173824 0.996036 + . ID=CGI_10019530; scaffold1763 TRF Tandem_Repeat 173756 173824 138 + . . scaffold1763 GLEAN mRNA 379099 379131 0.558324 - . ID=CGI_10019543; scaffold1763 TRF Tandem_Repeat 379099 379131 66 + . . scaffold1763 GLEAN mRNA 381084 381412 0.558324 - . ID=CGI_10019543; scaffold1763 TRF Tandem_Repeat 381084 381412 496 + . . scaffold1763 GLEAN mRNA 386008 386174 0.558324 - . ID=CGI_10019543; scaffold1763 TRF Tandem_Repeat 386008 386174 113 + . . scaffold1763 GLEAN mRNA 386156 386649 0.558324 - . ID=CGI_10019543; scaffold1763 TRF Tandem_Repeat 386156 386649 641 + . . scaffold1763 GLEAN mRNA 386697 386818 0.558324 - . ID=CGI_10019543; scaffold1763 TRF Tandem_Repeat 386697 386818 77 + . . scaffold1763 GLEAN mRNA 390715 390759 0.558324 - . ID=CGI_10019543; scaffold1763 TRF Tandem_Repeat 390715 390759 90 + . . scaffold1763 GLEAN mRNA 421812 421837 0.432682 + . ID=CGI_10019544; scaffold1763 TRF Tandem_Repeat 421812 421837 52 + . . scaffold1763 GLEAN mRNA 455885 455920 0.650443 + . ID=CGI_10019548; scaffold1763 TRF Tandem_Repeat 455885 455920 72 + . . scaffold1763 GLEAN mRNA 457574 457630 0.650443 + . ID=CGI_10019548; scaffold1763 TRF Tandem_Repeat 457574 457630 105 + . . scaffold1763 GLEAN mRNA 461089 461133 0.650443 + . ID=CGI_10019548; scaffold1763 TRF Tandem_Repeat 461089 461133 90 + . . scaffold1763 GLEAN mRNA 484776 484984 0.997911 + . ID=CGI_10019551; scaffold1763 TRF Tandem_Repeat 484776 484984 183 + . . scaffold1763 GLEAN mRNA 485658 486125 0.997911 + . ID=CGI_10019551; scaffold1763 TRF Tandem_Repeat 485658 486125 586 + . . scaffold1763 GLEAN mRNA 569572 569607 0.958069 + . ID=CGI_10019559; scaffold1763 TRF Tandem_Repeat 569572 569607 63 + . . scaffold1763 GLEAN mRNA 569611 569730 0.958069 + . ID=CGI_10019559; scaffold1763 TRF Tandem_Repeat 569611 569730 195 + . . scaffold1794 GLEAN mRNA 13338 14111 0.955362 + . ID=CGI_10019563; scaffold1794 TRF Tandem_Repeat 13338 14111 1303 + . . scaffold1794 GLEAN mRNA 13338 14111 0.955362 + . ID=CGI_10019563; scaffold1794 TRF Tandem_Repeat 13338 14111 1303 + . . scaffold1794 GLEAN mRNA 13338 14111 0.955362 + . ID=CGI_10019563; scaffold1794 TRF Tandem_Repeat 13338 14111 1303 + . . scaffold1794 GLEAN mRNA 27452 27555 0.51959 + . ID=CGI_10019565; scaffold1794 TRF Tandem_Repeat 27452 27555 109 + . . scaffold1794 GLEAN mRNA 27880 28140 0.51959 + . ID=CGI_10019565; scaffold1794 WUBlastX LINE_RTE-X 27880 28140 80 - . . scaffold1794 GLEAN mRNA 27877 28092 0.51959 + . ID=CGI_10019565; scaffold1794 WUBlastX LINE_RTE-X 27877 28092 96 - . . scaffold1794 GLEAN mRNA 27751 28095 0.51959 + . ID=CGI_10019565; scaffold1794 WUBlastX LINE_RTE-X 27751 28095 93 - . . scaffold1794 GLEAN mRNA 32611 33075 0.51959 + . ID=CGI_10019565; scaffold1794 WUBlastX LINE_L1-Tx1 32611 33075 48 - . . scaffold1794 GLEAN mRNA 43159 43217 0.723463 + . ID=CGI_10019566; scaffold1794 TRF Tandem_Repeat 43159 43217 57 + . . scaffold1794 GLEAN mRNA 62061 62102 0.723463 + . ID=CGI_10019566; scaffold1794 TRF Tandem_Repeat 62061 62102 66 + . . scaffold1794 GLEAN mRNA 62061 62102 0.625796 - . ID=CGI_10019567; scaffold1794 TRF Tandem_Repeat 62061 62102 66 + . . scaffold1794 GLEAN mRNA 66669 67031 1 - . ID=CGI_10019568; scaffold1794 WUBlastX LINE_RTE-BovB 66669 67031 153 + . . scaffold1794 GLEAN mRNA 75884 76001 0.927071 + . ID=CGI_10019569; scaffold1794 TRF Tandem_Repeat 75884 76001 114 + . . scaffold1794 GLEAN mRNA 75884 76003 0.927071 + . ID=CGI_10019569; scaffold1794 TRF Tandem_Repeat 75884 76003 101 + . . scaffold1794 GLEAN mRNA 76635 76759 0.927071 + . ID=CGI_10019569; scaffold1794 TRF Tandem_Repeat 76635 76759 74 + . . scaffold1794 GLEAN mRNA 102411 102727 0.999676 + . ID=CGI_10019571; scaffold1794 TRF Tandem_Repeat 102411 102727 79 + . . scaffold1794 GLEAN mRNA 102406 102689 0.999676 + . ID=CGI_10019571; scaffold1794 TRF Tandem_Repeat 102406 102689 175 + . . scaffold1794 GLEAN mRNA 102415 102760 0.999676 + . ID=CGI_10019571; scaffold1794 TRF Tandem_Repeat 102415 102760 507 + . . scaffold1794 GLEAN mRNA 102907 103302 0.999676 + . ID=CGI_10019571; scaffold1794 TRF Tandem_Repeat 102907 103302 519 + . . scaffold1794 GLEAN mRNA 104977 105126 0.999676 + . ID=CGI_10019571; scaffold1794 TRF Tandem_Repeat 104977 105126 162 + . . scaffold1794 GLEAN mRNA 106492 106550 0.999676 + . ID=CGI_10019571; scaffold1794 TRF Tandem_Repeat 106492 106550 118 + . . scaffold1794 GLEAN mRNA 107019 107409 0.999676 + . ID=CGI_10019571; scaffold1794 TRF Tandem_Repeat 107019 107409 649 + . . scaffold1794 GLEAN mRNA 126182 126279 0.941989 - . ID=CGI_10019573; scaffold1794 TRF Tandem_Repeat 126182 126279 73 + . . scaffold1794 GLEAN mRNA 126218 126288 0.941989 - . ID=CGI_10019573; scaffold1794 TRF Tandem_Repeat 126218 126288 70 + . . scaffold1794 GLEAN mRNA 160333 160608 0.879994 + . ID=CGI_10019575; scaffold1794 TRF Tandem_Repeat 160333 160608 498 + . . scaffold1794 GLEAN mRNA 165914 165951 0.879994 + . ID=CGI_10019575; scaffold1794 TRF Tandem_Repeat 165914 165951 51 + . . scaffold1794 GLEAN mRNA 168970 169363 0.879994 + . ID=CGI_10019575; scaffold1794 TRF Tandem_Repeat 168970 169363 425 + . . scaffold1794 GLEAN mRNA 218812 219736 0.999375 - . ID=CGI_10019578; scaffold1794 TRF Tandem_Repeat 218812 219736 1372 + . . scaffold1794 GLEAN mRNA 226241 227166 0.999375 - . ID=CGI_10019578; scaffold1794 TRF Tandem_Repeat 226241 227166 1238 + . . scaffold1794 GLEAN mRNA 227167 227635 0.999375 - . ID=CGI_10019578; scaffold1794 TRF Tandem_Repeat 227167 227635 688 + . . scaffold1794 GLEAN mRNA 231757 232139 0.999375 - . ID=CGI_10019578; scaffold1794 TRF Tandem_Repeat 231757 232139 577 + . . scaffold1794 GLEAN mRNA 237853 237982 0.999375 - . ID=CGI_10019578; scaffold1794 TRF Tandem_Repeat 237853 237982 93 + . . scaffold1794 GLEAN mRNA 237898 238044 0.999375 - . ID=CGI_10019578; scaffold1794 TRF Tandem_Repeat 237898 238044 73 + . . scaffold1794 GLEAN mRNA 239013 239780 0.999375 - . ID=CGI_10019578; scaffold1794 TRF Tandem_Repeat 239013 239780 736 + . . scaffold1794 GLEAN mRNA 239826 239857 0.999375 - . ID=CGI_10019578; scaffold1794 TRF Tandem_Repeat 239826 239857 55 + . . scaffold1794 GLEAN mRNA 250990 251581 1 + . ID=CGI_10019579; scaffold1794 TRF Tandem_Repeat 250990 251581 734 + . . scaffold1794 GLEAN mRNA 254675 254944 1 + . ID=CGI_10019579; scaffold1794 TRF Tandem_Repeat 254675 254944 364 + . . scaffold1794 GLEAN mRNA 254998 255033 1 + . ID=CGI_10019579; scaffold1794 TRF Tandem_Repeat 254998 255033 54 + . . scaffold1794 GLEAN mRNA 255202 256014 1 + . ID=CGI_10019579; scaffold1794 TRF Tandem_Repeat 255202 256014 1020 + . . scaffold1794 GLEAN mRNA 257913 258122 1 + . ID=CGI_10019579; scaffold1794 TRF Tandem_Repeat 257913 258122 379 + . . scaffold1794 GLEAN mRNA 265988 266125 1 - . ID=CGI_10019582; scaffold1794 TRF Tandem_Repeat 265988 266125 253 + . . scaffold1794 GLEAN mRNA 267056 267171 1 - . ID=CGI_10019582; scaffold1794 TRF Tandem_Repeat 267056 267171 158 + . . scaffold1794 GLEAN mRNA 267061 267138 1 - . ID=CGI_10019582; scaffold1794 TRF Tandem_Repeat 267061 267138 74 + . . scaffold1794 GLEAN mRNA 267362 267880 1 - . ID=CGI_10019582; scaffold1794 TRF Tandem_Repeat 267362 267880 826 + . . scaffold1794 GLEAN mRNA 295984 296354 0.791791 - . ID=CGI_10019585; scaffold1794 TRF Tandem_Repeat 295984 296354 553 + . . scaffold1794 GLEAN mRNA 298519 298632 0.791791 - . ID=CGI_10019585; scaffold1794 TRF Tandem_Repeat 298519 298632 106 + . . scaffold1794 GLEAN mRNA 301355 301406 0.791791 - . ID=CGI_10019585; scaffold1794 TRF Tandem_Repeat 301355 301406 104 + . . scaffold1794 GLEAN mRNA 306792 306816 0.791791 - . ID=CGI_10019585; scaffold1794 TRF Tandem_Repeat 306792 306816 50 + . . scaffold1794 GLEAN mRNA 345998 346328 0.999598 + . ID=CGI_10019588; scaffold1794 TRF Tandem_Repeat 345998 346328 301 + . . scaffold1794 GLEAN mRNA 351679 352783 0.999598 + . ID=CGI_10019588; scaffold1794 TRF Tandem_Repeat 351679 352783 2104 + . . scaffold1794 GLEAN mRNA 406819 406849 1 - . ID=CGI_10019590; scaffold1794 TRF Tandem_Repeat 406819 406849 53 + . . scaffold1794 GLEAN mRNA 551697 552140 0.854769 - . ID=CGI_10019596; scaffold1794 WUBlastX DNA_Academ 551556 552140 217 - . . scaffold1794 GLEAN mRNA 551706 552011 0.854769 - . ID=CGI_10019596; scaffold1794 WUBlastX DNA_Academ 551706 552011 226 - . . scaffold1794 GLEAN mRNA 591347 591451 0.999372 - . ID=CGI_10019600; scaffold1794 WUBlastX LINE_Penelope 591347 591457 81 + . . scaffold1889 GLEAN mRNA 76079 76148 0.532708 - . ID=CGI_10019602; scaffold1889 TRF Tandem_Repeat 76079 76148 140 + . . scaffold1889 GLEAN mRNA 76986 77028 0.532708 - . ID=CGI_10019602; scaffold1889 TRF Tandem_Repeat 76986 77028 86 + . . scaffold1889 GLEAN mRNA 82938 82992 0.532708 - . ID=CGI_10019602; scaffold1889 TRF Tandem_Repeat 82938 82992 56 + . . scaffold1889 GLEAN mRNA 84929 84978 0.532708 - . ID=CGI_10019602; scaffold1889 TRF Tandem_Repeat 84929 84978 64 + . . scaffold1889 GLEAN mRNA 157227 157278 0.499919 - . ID=CGI_10019606; scaffold1889 TRF Tandem_Repeat 157227 157278 104 + . . scaffold1889 GLEAN mRNA 179864 180210 0.977984 - . ID=CGI_10019607; scaffold1889 WUBlastX DNA_Academ 179864 181105 617 + . . scaffold1889 GLEAN mRNA 202020 202072 0.836613 - . ID=CGI_10019608; scaffold1889 TRF Tandem_Repeat 202020 202072 99 + . . scaffold1889 GLEAN mRNA 203744 203808 0.836613 - . ID=CGI_10019608; scaffold1889 TRF Tandem_Repeat 203744 203808 130 + . . scaffold1889 GLEAN mRNA 207440 207661 0.836613 - . ID=CGI_10019608; scaffold1889 WUBlastX LINE_RTE-X 207440 207661 88 + . . scaffold1889 GLEAN mRNA 207443 207613 0.836613 - . ID=CGI_10019608; scaffold1889 WUBlastX LINE_RTE-X 207443 207613 103 + . . scaffold1889 GLEAN mRNA 207443 207718 0.836613 - . ID=CGI_10019608; scaffold1889 WUBlastX LINE_RTE-X 207443 207718 45 + . . scaffold1889 GLEAN mRNA 210147 210359 1 + . ID=CGI_10019609; scaffold1889 TRF Tandem_Repeat 210147 210359 336 + . . scaffold1889 GLEAN mRNA 219555 219610 0.990649 - . ID=CGI_10019610; scaffold1889 TRF Tandem_Repeat 219555 219610 112 + . . scaffold1889 GLEAN mRNA 251121 251172 0.695758 - . ID=CGI_10019611; scaffold1889 TRF Tandem_Repeat 251121 251172 104 + . . scaffold1889 GLEAN mRNA 262732 262770 0.695758 - . ID=CGI_10019611; scaffold1889 TRF Tandem_Repeat 262732 262770 64 + . . scaffold1889 GLEAN mRNA 288254 289088 0.64223 - . ID=CGI_10019612; scaffold1889 TRF Tandem_Repeat 288254 289088 1435 + . . scaffold1889 GLEAN mRNA 361562 361628 0.88549 - . ID=CGI_10019616; scaffold1889 TRF Tandem_Repeat 361562 361628 80 + . . scaffold1889 GLEAN mRNA 449479 449727 0.543444 + . ID=CGI_10019619; scaffold1889 TRF Tandem_Repeat 449479 449727 158 + . . scaffold1889 GLEAN mRNA 460242 460998 0.741709 + . ID=CGI_10019620; scaffold1889 TRF Tandem_Repeat 460242 460998 807 + . . scaffold1889 GLEAN mRNA 462084 462156 0.741709 + . ID=CGI_10019620; scaffold1889 TRF Tandem_Repeat 462084 462156 58 + . . scaffold1889 GLEAN mRNA 462709 462821 0.741709 + . ID=CGI_10019620; scaffold1889 TRF Tandem_Repeat 462709 462821 100 + . . scaffold1889 GLEAN mRNA 481349 481546 0.763475 - . ID=CGI_10019621; scaffold1889 TRF Tandem_Repeat 481349 481546 288 + . . scaffold1889 GLEAN mRNA 495348 495744 1 + . ID=CGI_10019622; scaffold1889 TRF Tandem_Repeat 495348 495744 179 + . . scaffold1889 GLEAN mRNA 514738 514829 0.995755 - . ID=CGI_10019625; scaffold1889 TRF Tandem_Repeat 514738 514829 62 + . . scaffold1889 GLEAN mRNA 514737 515027 0.995755 - . ID=CGI_10019625; scaffold1889 TRF Tandem_Repeat 514737 515027 449 + . . scaffold1889 GLEAN mRNA 554565 554596 0.660887 + . ID=CGI_10019627; scaffold1889 TRF Tandem_Repeat 554565 554596 55 + . . scaffold1889 GLEAN mRNA 568307 568744 0.990088 + . ID=CGI_10019628; scaffold1889 WUBlastX LINE_CR1 568307 568744 141 + . . scaffold1896 GLEAN mRNA 44498 44549 0.999999 + . ID=CGI_10019633; scaffold1896 TRF Tandem_Repeat 44498 44549 95 + . . scaffold1896 GLEAN mRNA 69252 69687 0.989491 + . ID=CGI_10019634; scaffold1896 TRF Tandem_Repeat 69252 69687 598 + . . scaffold1896 GLEAN mRNA 75826 75957 0.989491 + . ID=CGI_10019634; scaffold1896 TRF Tandem_Repeat 75826 75957 201 + . . scaffold1896 GLEAN mRNA 78008 78052 0.989491 + . ID=CGI_10019634; scaffold1896 TRF Tandem_Repeat 78008 78052 90 + . . scaffold1896 GLEAN mRNA 77999 78056 0.989491 + . ID=CGI_10019634; scaffold1896 TRF Tandem_Repeat 77999 78056 71 + . . scaffold1896 GLEAN mRNA 66811 66951 0.989491 + . ID=CGI_10019634; scaffold1896 WUBlastX LINE_I 66811 66951 56 + . . scaffold1896 GLEAN mRNA 131944 131993 0.274309 - . ID=CGI_10019635; scaffold1896 TRF Tandem_Repeat 131944 131993 100 + . . scaffold1896 GLEAN mRNA 137150 137885 0.274309 - . ID=CGI_10019635; scaffold1896 TRF Tandem_Repeat 137150 137885 1040 + . . scaffold1896 GLEAN mRNA 148163 148192 0.274309 - . ID=CGI_10019635; scaffold1896 TRF Tandem_Repeat 148163 148192 51 + . . scaffold1896 GLEAN mRNA 148270 148299 0.274309 - . ID=CGI_10019635; scaffold1896 TRF Tandem_Repeat 148270 148299 51 + . . scaffold1896 GLEAN mRNA 150167 150664 0.274309 - . ID=CGI_10019635; scaffold1896 WUBlastX LINE_L2 150167 150664 128 - . . scaffold1896 GLEAN mRNA 170118 170149 0.936295 - . ID=CGI_10019636; scaffold1896 TRF Tandem_Repeat 170118 170149 64 + . . scaffold1896 GLEAN mRNA 176115 176164 0.936295 - . ID=CGI_10019636; scaffold1896 TRF Tandem_Repeat 176115 176164 75 + . . scaffold1896 GLEAN mRNA 176551 176594 0.936295 - . ID=CGI_10019636; scaffold1896 TRF Tandem_Repeat 176551 176594 88 + . . scaffold1896 GLEAN mRNA 178051 178104 0.936295 - . ID=CGI_10019636; scaffold1896 TRF Tandem_Repeat 178051 178104 99 + . . scaffold1896 GLEAN mRNA 186277 186320 0.936295 - . ID=CGI_10019636; scaffold1896 TRF Tandem_Repeat 186277 186320 88 + . . scaffold1896 GLEAN mRNA 187016 187417 0.936295 - . ID=CGI_10019636; scaffold1896 TRF Tandem_Repeat 187016 187417 517 + . . scaffold1896 GLEAN mRNA 198967 199016 0.936295 - . ID=CGI_10019636; scaffold1896 TRF Tandem_Repeat 198967 199016 82 + . . scaffold1896 GLEAN mRNA 204905 205110 0.936295 - . ID=CGI_10019636; scaffold1896 TRF Tandem_Repeat 204905 205110 198 + . . scaffold1896 GLEAN mRNA 279902 279971 0.665839 + . ID=CGI_10019638; scaffold1896 TRF Tandem_Repeat 279902 279971 95 + . . scaffold1896 GLEAN mRNA 279832 280198 0.665839 + . ID=CGI_10019638; scaffold1896 TRF Tandem_Repeat 279832 280198 430 + . . scaffold1896 GLEAN mRNA 279902 279971 0.475607 - . ID=CGI_10019639; scaffold1896 TRF Tandem_Repeat 279902 279971 95 + . . scaffold1896 GLEAN mRNA 279832 280198 0.475607 - . ID=CGI_10019639; scaffold1896 TRF Tandem_Repeat 279832 280198 430 + . . scaffold1896 GLEAN mRNA 323422 323471 0.99887 - . ID=CGI_10019642; scaffold1896 TRF Tandem_Repeat 323422 323471 100 + . . scaffold1896 GLEAN mRNA 340202 340238 0.894544 + . ID=CGI_10019643; scaffold1896 TRF Tandem_Repeat 340202 340238 74 + . . scaffold1896 GLEAN mRNA 357515 357564 0.999949 - . ID=CGI_10019644; scaffold1896 TRF Tandem_Repeat 357515 357564 100 + . . scaffold1896 GLEAN mRNA 364842 364967 0.999624 - . ID=CGI_10019645; scaffold1896 TRF Tandem_Repeat 364842 364967 143 + . . scaffold1896 GLEAN mRNA 365215 365261 0.999624 - . ID=CGI_10019645; scaffold1896 TRF Tandem_Repeat 365215 365261 94 + . . scaffold1896 GLEAN mRNA 364842 364967 0.893639 + . ID=CGI_10019646; scaffold1896 TRF Tandem_Repeat 364842 364967 143 + . . scaffold1896 GLEAN mRNA 365215 365261 0.893639 + . ID=CGI_10019646; scaffold1896 TRF Tandem_Repeat 365215 365261 94 + . . scaffold1896 GLEAN mRNA 391798 392179 0.990814 - . ID=CGI_10019649; scaffold1896 TRF Tandem_Repeat 391798 392179 535 + . . scaffold1896 GLEAN mRNA 391798 392179 0.990814 - . ID=CGI_10019649; scaffold1896 TRF Tandem_Repeat 391798 392179 535 + . . scaffold1896 GLEAN mRNA 386345 386719 0.990814 - . ID=CGI_10019649; scaffold1896 WUBlastX DNA_Crypton 386345 386719 59 - . . scaffold1896 GLEAN mRNA 458039 458067 0.989805 - . ID=CGI_10019651; scaffold1896 TRF Tandem_Repeat 458039 458067 58 + . . scaffold1896 GLEAN mRNA 453614 453685 0.989805 - . ID=CGI_10019651; scaffold1896 WUBlastX LTR_Gypsy 453614 453685 30 - . . scaffold1896 GLEAN mRNA 485971 486243 0.999947 + . ID=CGI_10019652; scaffold1896 WUBlastX LTR_Ngaro 485971 486243 59 + . . scaffold1896 GLEAN mRNA 485843 486064 0.999947 + . ID=CGI_10019652; scaffold1896 WUBlastX LTR_Ngaro 485843 486064 68 + . . scaffold1896 GLEAN mRNA 486207 486317 0.999947 + . ID=CGI_10019652; scaffold1896 WUBlastX LTR_Ngaro 486207 486317 48 + . . scaffold1896 GLEAN mRNA 484068 485528 0.999947 + . ID=CGI_10019652; scaffold1896 WUBlastX LTR_Ngaro 484068 485528 762 + . . scaffold1896 GLEAN mRNA 483439 483717 0.999947 + . ID=CGI_10019652; scaffold1896 WUBlastX LTR_Ngaro 483439 483717 111 + . . scaffold1896 GLEAN mRNA 485453 485989 0.999947 + . ID=CGI_10019652; scaffold1896 WUBlastX LTR_Ngaro 485453 485989 175 + . . scaffold1896 GLEAN mRNA 483439 483903 0.999947 + . ID=CGI_10019652; scaffold1896 WUBlastX LTR_Ngaro 483439 483903 68 + . . scaffold1896 GLEAN mRNA 486237 486332 0.999947 + . ID=CGI_10019652; scaffold1896 WUBlastX LTR_Ngaro 486237 486332 25 + . . scaffold1896 GLEAN mRNA 500259 500317 0.237457 - . ID=CGI_10019653; scaffold1896 TRF Tandem_Repeat 500259 500317 66 + . . scaffold1896 GLEAN mRNA 500265 500326 0.237457 - . ID=CGI_10019653; scaffold1896 TRF Tandem_Repeat 500265 500326 72 + . . scaffold1896 GLEAN mRNA 506630 506660 0.237457 - . ID=CGI_10019653; scaffold1896 TRF Tandem_Repeat 506630 506660 53 + . . scaffold1896 GLEAN mRNA 511523 511581 0.237457 - . ID=CGI_10019653; scaffold1896 TRF Tandem_Repeat 511523 511581 109 + . . scaffold1896 GLEAN mRNA 515607 515662 0.237457 - . ID=CGI_10019653; scaffold1896 TRF Tandem_Repeat 515607 515662 94 + . . scaffold1896 GLEAN mRNA 536280 537051 0.320631 + . ID=CGI_10019655; scaffold1896 TRF Tandem_Repeat 536280 537051 1289 + . . scaffold1896 GLEAN mRNA 537244 537293 0.320631 + . ID=CGI_10019655; scaffold1896 TRF Tandem_Repeat 537244 537293 66 + . . scaffold1896 GLEAN mRNA 578224 578261 0.607413 - . ID=CGI_10019658; scaffold1896 TRF Tandem_Repeat 578224 578261 67 + . . scaffold1896 GLEAN mRNA 579625 580129 0.607413 - . ID=CGI_10019658; scaffold1896 TRF Tandem_Repeat 579625 580129 672 + . . scaffold1896 GLEAN mRNA 579625 580311 0.607413 - . ID=CGI_10019658; scaffold1896 TRF Tandem_Repeat 579625 580311 794 + . . scaffold1896 GLEAN mRNA 579625 580311 0.607413 - . ID=CGI_10019658; scaffold1896 TRF Tandem_Repeat 579625 580311 794 + . . scaffold1896 GLEAN mRNA 580131 580311 0.607413 - . ID=CGI_10019658; scaffold1896 TRF Tandem_Repeat 580131 580311 197 + . . scaffold1896 GLEAN mRNA 583219 583372 0.607413 - . ID=CGI_10019658; scaffold1896 TRF Tandem_Repeat 583219 583372 119 + . . scaffold1896 GLEAN mRNA 583187 583436 0.607413 - . ID=CGI_10019658; scaffold1896 TRF Tandem_Repeat 583187 583436 446 + . . scaffold1715 GLEAN mRNA 23506 23559 0.469378 + . ID=CGI_10019659; scaffold1715 TRF Tandem_Repeat 23506 23559 108 + . . scaffold1715 GLEAN mRNA 25650 25678 0.469378 + . ID=CGI_10019659; scaffold1715 TRF Tandem_Repeat 25650 25678 51 + . . scaffold1715 GLEAN mRNA 26436 26993 0.469378 + . ID=CGI_10019659; scaffold1715 WUBlastX LINE_R2-Hero 26436 26993 112 - . . scaffold1715 GLEAN mRNA 61941 61982 0.926412 + . ID=CGI_10019661; scaffold1715 TRF Tandem_Repeat 61941 61982 84 + . . scaffold1715 GLEAN mRNA 64650 64701 0.926412 + . ID=CGI_10019661; scaffold1715 TRF Tandem_Repeat 64650 64701 104 + . . scaffold1715 GLEAN mRNA 89469 89554 0.96957 + . ID=CGI_10019662; scaffold1715 TRF Tandem_Repeat 89469 89554 165 + . . scaffold1715 GLEAN mRNA 108314 108375 0.96957 + . ID=CGI_10019662; scaffold1715 TRF Tandem_Repeat 108314 108375 115 + . . scaffold1715 GLEAN mRNA 125246 125306 1 + . ID=CGI_10019663; scaffold1715 TRF Tandem_Repeat 125246 125306 65 + . . scaffold1715 GLEAN mRNA 127764 127804 1 + . ID=CGI_10019663; scaffold1715 TRF Tandem_Repeat 127764 127804 75 + . . scaffold1715 GLEAN mRNA 153473 153512 0.729615 + . ID=CGI_10019664; scaffold1715 TRF Tandem_Repeat 153473 153512 80 + . . scaffold1715 GLEAN mRNA 157894 158639 0.729615 + . ID=CGI_10019664; scaffold1715 TRF Tandem_Repeat 157894 158639 786 + . . scaffold1715 GLEAN mRNA 181776 181888 0.579396 - . ID=CGI_10019666; scaffold1715 TRF Tandem_Repeat 181776 181888 93 + . . scaffold1715 GLEAN mRNA 243095 243138 0.997006 - . ID=CGI_10019669; scaffold1715 TRF Tandem_Repeat 243095 243138 88 + . . scaffold1715 GLEAN mRNA 270609 273250 0.976779 + . ID=CGI_10019670; scaffold1715 TRF Tandem_Repeat 270609 273250 3437 + . . scaffold1715 GLEAN mRNA 270609 272525 0.976779 + . ID=CGI_10019670; scaffold1715 TRF Tandem_Repeat 270609 272525 2678 + . . scaffold1715 GLEAN mRNA 272535 273251 0.976779 + . ID=CGI_10019670; scaffold1715 TRF Tandem_Repeat 272535 273251 910 + . . scaffold1715 GLEAN mRNA 293961 293994 0.889634 - . ID=CGI_10019671; scaffold1715 TRF Tandem_Repeat 293961 293994 68 + . . scaffold1715 GLEAN mRNA 326339 326719 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_Penelope 326339 326719 89 + . . scaffold1715 GLEAN mRNA 332350 332401 0.986612 - . ID=CGI_10019672; scaffold1715 TRF Tandem_Repeat 332350 332401 104 + . . scaffold1715 GLEAN mRNA 338282 338452 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_Jockey 338282 338452 45 - . . scaffold1715 GLEAN mRNA 334024 334230 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_L1-Tx1 334024 334230 22 - . . scaffold1715 GLEAN mRNA 337939 338250 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_RTE-X 337939 338250 53 - . . scaffold1715 GLEAN mRNA 333198 333254 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LTR_Gypsy 333198 333254 45 + . . scaffold1715 GLEAN mRNA 333434 333649 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LTR_Gypsy 333434 333649 20 + . . scaffold1715 GLEAN mRNA 337885 338025 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_RTE-X 337885 338025 21 - . . scaffold1715 GLEAN mRNA 328038 328265 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_Penelope 328038 328265 36 + . . scaffold1715 GLEAN mRNA 333262 333372 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LTR_Gypsy 333262 333372 42 + . . scaffold1715 GLEAN mRNA 328146 328367 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_Penelope 328146 328367 33 + . . scaffold1715 GLEAN mRNA 337575 337763 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_RTE-X 337575 337763 36 - . . scaffold1715 GLEAN mRNA 337611 337775 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_RTE-X 337611 337775 43 - . . scaffold1715 GLEAN mRNA 337784 337867 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_CR1-L2 337784 337867 25 - . . scaffold1715 GLEAN mRNA 328143 328268 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_Penelope 328143 328268 49 + . . scaffold1715 GLEAN mRNA 337542 337790 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_CR1 337542 337790 28 - . . scaffold1715 GLEAN mRNA 333528 333641 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LTR_Gypsy 333528 333641 29 + . . scaffold1715 GLEAN mRNA 326707 327936 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_Penelope 326707 327936 231 + . . scaffold1715 GLEAN mRNA 326983 327963 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_Penelope 326983 327963 408 + . . scaffold1715 GLEAN mRNA 357291 357569 0.588766 - . ID=CGI_10019673; scaffold1715 WUBlastX LINE_L2 357291 357569 128 - . . scaffold1715 GLEAN mRNA 406803 406937 0.691889 + . ID=CGI_10019674; scaffold1715 TRF Tandem_Repeat 406803 406937 198 + . . scaffold1715 GLEAN mRNA 413065 413120 0.691889 + . ID=CGI_10019674; scaffold1715 TRF Tandem_Repeat 413065 413120 112 + . . scaffold1715 GLEAN mRNA 417847 418214 0.691889 + . ID=CGI_10019674; scaffold1715 TRF Tandem_Repeat 417847 418214 594 + . . scaffold1715 GLEAN mRNA 427905 428045 0.999981 - . ID=CGI_10019675; scaffold1715 WUBlastX DNA_IS4EU 427905 428045 61 - . . scaffold1715 GLEAN mRNA 427782 428126 0.999981 - . ID=CGI_10019675; scaffold1715 WUBlastX DNA_IS4EU 427782 428126 61 - . . scaffold1715 GLEAN mRNA 429651 430019 0.999994 + . ID=CGI_10019676; scaffold1715 WUBlastX LINE_L2 429453 430019 158 + . . scaffold1715 GLEAN mRNA 444521 445141 0.998814 + . ID=CGI_10019678; scaffold1715 WUBlastX LTR_Gypsy-Cigr 444521 445141 326 + . . scaffold1715 GLEAN mRNA 455052 455708 0.998814 + . ID=CGI_10019678; scaffold1715 WUBlastX DNA_IS4EU 455052 455708 320 + . . scaffold1715 GLEAN mRNA 489356 489406 0.851909 + . ID=CGI_10019681; scaffold1715 TRF Tandem_Repeat 489356 489406 102 + . . scaffold1715 GLEAN mRNA 491232 491285 0.851909 + . ID=CGI_10019681; scaffold1715 TRF Tandem_Repeat 491232 491285 67 + . . scaffold1715 GLEAN mRNA 533550 533584 0.330232 - . ID=CGI_10019684; scaffold1715 TRF Tandem_Repeat 533550 533584 70 + . . scaffold1715 GLEAN mRNA 535586 535625 0.330232 - . ID=CGI_10019684; scaffold1715 TRF Tandem_Repeat 535586 535625 80 + . . scaffold1715 GLEAN mRNA 538620 538644 0.330232 - . ID=CGI_10019684; scaffold1715 TRF Tandem_Repeat 538620 538644 50 + . . scaffold1715 GLEAN mRNA 558345 558393 0.407691 + . ID=CGI_10019686; scaffold1715 TRF Tandem_Repeat 558345 558393 98 + . . scaffold1715 GLEAN mRNA 570432 570659 0.407691 + . ID=CGI_10019686; scaffold1715 WUBlastX LINE_L2 570432 570659 130 + . . scaffold1715 GLEAN mRNA 570984 571172 0.407691 + . ID=CGI_10019686; scaffold1715 WUBlastX LINE_L2 570984 571172 53 + . . scaffold1715 GLEAN mRNA 567670 567921 0.407691 + . ID=CGI_10019686; scaffold1715 WUBlastX LINE_CR1-L2 567670 567921 27 + . . scaffold1715 GLEAN mRNA 570372 570647 0.407691 + . ID=CGI_10019686; scaffold1715 WUBlastX LINE_CR1-L2 570372 570647 128 + . . scaffold1715 GLEAN mRNA 568809 569267 0.407691 + . ID=CGI_10019686; scaffold1715 WUBlastX LINE_CR1-L2 568809 569267 245 + . . scaffold1715 GLEAN mRNA 568635 569243 0.407691 + . ID=CGI_10019686; scaffold1715 WUBlastX LINE_L2 568635 569243 61 + . . scaffold1715 GLEAN mRNA 570659 570967 0.407691 + . ID=CGI_10019686; scaffold1715 WUBlastX LINE_CR1-L2 570659 570967 145 + . . scaffold1715 GLEAN mRNA 577900 577942 0.939549 + . ID=CGI_10019687; scaffold1715 TRF Tandem_Repeat 577900 577942 86 + . . scaffold1715 GLEAN mRNA 591187 592159 0.612358 + . ID=CGI_10019689; scaffold1715 TRF Tandem_Repeat 591187 592159 1210 + . . scaffold1031 GLEAN mRNA 6442 6477 0.84103 - . ID=CGI_10019690; scaffold1031 TRF Tandem_Repeat 6442 6477 63 + . . scaffold1031 GLEAN mRNA 9103 9324 0.84103 - . ID=CGI_10019690; scaffold1031 WUBlastX LINE_Penelope 9103 9324 28 - . . scaffold1031 GLEAN mRNA 10281 10424 0.84103 - . ID=CGI_10019690; scaffold1031 WUBlastX LINE_Penelope 10281 10424 56 - . . scaffold1031 GLEAN mRNA 8808 9077 0.84103 - . ID=CGI_10019690; scaffold1031 WUBlastX LINE_Penelope 8808 9077 31 - . . scaffold1031 GLEAN mRNA 50787 50851 0.999951 + . ID=CGI_10019692; scaffold1031 TRF Tandem_Repeat 50787 50851 121 + . . scaffold1031 GLEAN mRNA 51053 51116 0.999951 + . ID=CGI_10019692; scaffold1031 TRF Tandem_Repeat 51053 51116 119 + . . scaffold1031 GLEAN mRNA 52245 52306 0.999951 + . ID=CGI_10019692; scaffold1031 TRF Tandem_Repeat 52245 52306 108 + . . scaffold1031 GLEAN mRNA 70885 70926 0.734554 - . ID=CGI_10019693; scaffold1031 TRF Tandem_Repeat 70885 70926 66 + . . scaffold1031 GLEAN mRNA 146354 146380 0.997604 + . ID=CGI_10019696; scaffold1031 TRF Tandem_Repeat 146354 146380 54 + . . scaffold1031 GLEAN mRNA 147244 147278 0.997604 + . ID=CGI_10019696; scaffold1031 TRF Tandem_Repeat 147244 147278 70 + . . scaffold1031 GLEAN mRNA 152382 152410 0.997604 + . ID=CGI_10019696; scaffold1031 TRF Tandem_Repeat 152382 152410 58 + . . scaffold1031 GLEAN mRNA 207021 207359 0.999658 - . ID=CGI_10019698; scaffold1031 WUBlastX DNA_IS4EU 207021 207359 152 + . . scaffold1031 GLEAN mRNA 206913 207350 0.999658 - . ID=CGI_10019698; scaffold1031 WUBlastX DNA_Kolobok-IS4 206913 207350 148 + . . scaffold1031 GLEAN mRNA 206716 206943 0.999658 - . ID=CGI_10019698; scaffold1031 WUBlastX DNA_IS4EU 206716 206943 22 + . . scaffold1031 GLEAN mRNA 206313 206414 0.999658 - . ID=CGI_10019698; scaffold1031 WUBlastX LTR_DIRS 206313 206414 39 - . . scaffold1031 GLEAN mRNA 206401 206553 0.999658 - . ID=CGI_10019698; scaffold1031 WUBlastX LTR_DIRS 206401 206553 24 - . . scaffold1031 GLEAN mRNA 364550 364645 0.999676 - . ID=CGI_10019705; scaffold1031 TRF Tandem_Repeat 364550 364645 111 + . . scaffold1031 GLEAN mRNA 387943 388623 0.970693 - . ID=CGI_10019708; scaffold1031 WUBlastX DNA_hAT 387943 388623 75 - . . scaffold1031 GLEAN mRNA 417345 417831 0.759973 + . ID=CGI_10019710; scaffold1031 TRF Tandem_Repeat 417345 417831 239 + . . scaffold1031 GLEAN mRNA 443163 443895 0.759973 + . ID=CGI_10019710; scaffold1031 TRF Tandem_Repeat 443163 443895 679 + . . scaffold1031 GLEAN mRNA 498013 498046 0.985267 + . ID=CGI_10019711; scaffold1031 TRF Tandem_Repeat 498013 498046 68 + . . scaffold1031 GLEAN mRNA 571909 571941 0.583554 - . ID=CGI_10019718; scaffold1031 TRF Tandem_Repeat 571909 571941 66 + . . scaffold1031 GLEAN mRNA 592219 593214 0.583554 - . ID=CGI_10019718; scaffold1031 WUBlastX DNA_TcMar-Tc1 592219 593214 147 - . . scaffold1031 GLEAN mRNA 592369 593211 0.583554 - . ID=CGI_10019718; scaffold1031 WUBlastX DNA_TcMar-Tc1 592369 593211 264 - . . scaffold1031 GLEAN mRNA 592185 592346 0.583554 - . ID=CGI_10019718; scaffold1031 WUBlastX DNA_TcMar-Tc1 592185 592346 69 - . . scaffold1221 GLEAN mRNA 7928 8222 0.996819 - . ID=CGI_10019721; scaffold1221 WUBlastX LTR_Gypsy 7928 8317 28 - . . scaffold1221 GLEAN mRNA 8048 8222 0.996819 - . ID=CGI_10019721; scaffold1221 WUBlastX LTR_Gypsy 8048 8317 42 - . . scaffold1221 GLEAN mRNA 14010 14058 0.998979 + . ID=CGI_10019722; scaffold1221 TRF Tandem_Repeat 14010 14058 73 + . . scaffold1221 GLEAN mRNA 17530 17569 0.998979 + . ID=CGI_10019722; scaffold1221 TRF Tandem_Repeat 17530 17569 80 + . . scaffold1221 GLEAN mRNA 20290 20764 0.998979 + . ID=CGI_10019722; scaffold1221 TRF Tandem_Repeat 20290 20764 604 + . . scaffold1221 GLEAN mRNA 20290 20764 0.998979 + . ID=CGI_10019722; scaffold1221 TRF Tandem_Repeat 20290 20764 604 + . . scaffold1221 GLEAN mRNA 20290 20764 0.998979 + . ID=CGI_10019722; scaffold1221 TRF Tandem_Repeat 20290 20764 598 + . . scaffold1221 GLEAN mRNA 35746 35946 1 - . ID=CGI_10019725; scaffold1221 WUBlastX DNA_Kolobok 35746 35991 116 - . . scaffold1221 GLEAN mRNA 63630 63669 0.696179 + . ID=CGI_10019728; scaffold1221 TRF Tandem_Repeat 63630 63669 80 + . . scaffold1221 GLEAN mRNA 64552 64620 0.696179 + . ID=CGI_10019728; scaffold1221 TRF Tandem_Repeat 64552 64620 63 + . . scaffold1221 GLEAN mRNA 66662 67015 0.696179 + . ID=CGI_10019728; scaffold1221 WUBlastX DNA_Maverick 66662 67015 43 - . . scaffold1221 GLEAN mRNA 67015 67824 0.696179 + . ID=CGI_10019728; scaffold1221 WUBlastX LTR_Gypsy 67015 67824 549 - . . scaffold1221 GLEAN mRNA 68253 68477 0.696179 + . ID=CGI_10019728; scaffold1221 WUBlastX LTR_Gypsy 68253 68477 221 - . . scaffold1221 GLEAN mRNA 69329 69430 0.696179 + . ID=CGI_10019728; scaffold1221 WUBlastX LTR_Gypsy 69329 69430 25 - . . scaffold1221 GLEAN mRNA 66770 67009 0.696179 + . ID=CGI_10019728; scaffold1221 WUBlastX LTR_Gypsy-Cigr 66770 67009 93 - . . scaffold1221 GLEAN mRNA 66955 67323 0.696179 + . ID=CGI_10019728; scaffold1221 WUBlastX LTR_Gypsy 66955 67323 119 - . . scaffold1221 GLEAN mRNA 67901 68245 0.696179 + . ID=CGI_10019728; scaffold1221 WUBlastX LTR_Gypsy 67901 68245 260 - . . scaffold1221 GLEAN mRNA 69153 69362 0.696179 + . ID=CGI_10019728; scaffold1221 WUBlastX LTR_Gypsy 69153 69362 48 - . . scaffold1221 GLEAN mRNA 67805 68260 0.696179 + . ID=CGI_10019728; scaffold1221 WUBlastX LTR_Gypsy-Cigr 67805 68260 252 - . . scaffold1221 GLEAN mRNA 68256 68564 0.696179 + . ID=CGI_10019728; scaffold1221 WUBlastX LTR_Gypsy 68256 68564 206 - . . scaffold1221 GLEAN mRNA 68253 69320 0.696179 + . ID=CGI_10019728; scaffold1221 WUBlastX LTR_Gypsy-Cigr 68253 69320 194 - . . scaffold1221 GLEAN mRNA 64671 66413 0.696179 + . ID=CGI_10019728; scaffold1221 WUBlastX RC_Helitron 64671 66413 656 + . . scaffold1221 GLEAN mRNA 90624 90664 0.99967 - . ID=CGI_10019730; scaffold1221 TRF Tandem_Repeat 90624 90664 82 + . . scaffold1221 GLEAN mRNA 87952 88761 0.99967 - . ID=CGI_10019730; scaffold1221 WUBlastX DNA_MuDR 87952 88761 242 + . . scaffold1221 GLEAN mRNA 93517 93927 0.99967 - . ID=CGI_10019730; scaffold1221 WUBlastX LINE_RTE-X 93517 93927 94 + . . scaffold1221 GLEAN mRNA 86125 86205 0.99967 - . ID=CGI_10019730; scaffold1221 WUBlastX LTR_Gypsy 86125 86205 84 + . . scaffold1221 GLEAN mRNA 99989 100046 0.999996 + . ID=CGI_10019731; scaffold1221 TRF Tandem_Repeat 99989 100046 116 + . . scaffold1221 GLEAN mRNA 133047 133077 0.698987 - . ID=CGI_10019734; scaffold1221 TRF Tandem_Repeat 133047 133077 62 + . . scaffold1221 GLEAN mRNA 137038 137830 0.698987 - . ID=CGI_10019734; scaffold1221 TRF Tandem_Repeat 137038 137830 1201 + . . scaffold1221 GLEAN mRNA 174204 174254 0.801242 - . ID=CGI_10019736; scaffold1221 TRF Tandem_Repeat 174204 174254 95 + . . scaffold1221 GLEAN mRNA 237920 237958 1 - . ID=CGI_10019737; scaffold1221 TRF Tandem_Repeat 237920 237958 78 + . . scaffold1221 GLEAN mRNA 303511 303855 0.999196 + . ID=CGI_10019742; scaffold1221 WUBlastX LINE_RTE-X 303511 303855 164 - . . scaffold1221 GLEAN mRNA 303478 303939 0.999196 + . ID=CGI_10019742; scaffold1221 WUBlastX LINE_RTE-X 303478 303939 128 - . . scaffold1221 GLEAN mRNA 320905 320931 0.998804 + . ID=CGI_10019744; scaffold1221 TRF Tandem_Repeat 320905 320931 54 + . . scaffold1221 GLEAN mRNA 321018 321048 0.998804 + . ID=CGI_10019744; scaffold1221 TRF Tandem_Repeat 321018 321048 62 + . . scaffold1221 GLEAN mRNA 382904 383001 0.753368 - . ID=CGI_10019745; scaffold1221 TRF Tandem_Repeat 382904 383001 169 + . . scaffold1221 GLEAN mRNA 390295 390630 0.753368 - . ID=CGI_10019745; scaffold1221 WUBlastX LINE_L1 390295 390630 87 + . . scaffold1221 GLEAN mRNA 390349 390708 0.753368 - . ID=CGI_10019745; scaffold1221 WUBlastX LINE_L1-Tx1 390349 390708 163 + . . scaffold1221 GLEAN mRNA 390749 391723 0.753368 - . ID=CGI_10019745; scaffold1221 WUBlastX LINE_L1-Tx1 390749 391723 85 + . . scaffold1221 GLEAN mRNA 390034 390657 0.753368 - . ID=CGI_10019745; scaffold1221 WUBlastX LINE_L1 390034 390657 30 + . . scaffold1221 GLEAN mRNA 417618 417654 0.999155 - . ID=CGI_10019746; scaffold1221 TRF Tandem_Repeat 417618 417654 67 + . . scaffold1221 GLEAN mRNA 424386 424417 0.999155 - . ID=CGI_10019746; scaffold1221 TRF Tandem_Repeat 424386 424417 55 + . . scaffold1221 GLEAN mRNA 511087 511233 0.549954 - . ID=CGI_10019748; scaffold1221 WUBlastX DNA_PiggyBac 511087 511233 65 - . . scaffold1221 GLEAN mRNA 512102 512206 0.549954 - . ID=CGI_10019748; scaffold1221 WUBlastX DNA_PiggyBac 512102 512206 30 - . . scaffold1221 GLEAN mRNA 512126 512206 0.549954 - . ID=CGI_10019748; scaffold1221 WUBlastX DNA_PiggyBac 512126 512206 37 - . . scaffold1221 GLEAN mRNA 512554 512631 0.549954 - . ID=CGI_10019748; scaffold1221 WUBlastX DNA_PiggyBac 512554 512631 48 - . . scaffold1221 GLEAN mRNA 511248 511319 0.549954 - . ID=CGI_10019748; scaffold1221 WUBlastX DNA_PiggyBac 511248 511319 22 - . . scaffold1221 GLEAN mRNA 524067 524212 0.967384 + . ID=CGI_10019749; scaffold1221 TRF Tandem_Repeat 524067 524212 204 + . . scaffold1221 GLEAN mRNA 523216 523650 0.967384 + . ID=CGI_10019749; scaffold1221 WUBlastX LINE_L1-Tx1 523216 523650 166 + . . scaffold1221 GLEAN mRNA 523671 523994 0.967384 + . ID=CGI_10019749; scaffold1221 WUBlastX LINE_L1-Tx1 523671 523994 115 + . . scaffold1221 GLEAN mRNA 523662 524054 0.967384 + . ID=CGI_10019749; scaffold1221 WUBlastX LINE_L1-Tx1 523662 524054 93 + . . scaffold1221 GLEAN mRNA 533421 533480 0.967384 + . ID=CGI_10019749; scaffold1221 TRF Tandem_Repeat 533421 533480 66 + . . scaffold1221 GLEAN mRNA 535055 535099 0.967384 + . ID=CGI_10019749; scaffold1221 TRF Tandem_Repeat 535055 535099 90 + . . scaffold1221 GLEAN mRNA 526435 526656 0.967384 + . ID=CGI_10019749; scaffold1221 WUBlastX LINE_L1 526435 526656 36 + . . scaffold1221 GLEAN mRNA 525935 526402 0.967384 + . ID=CGI_10019749; scaffold1221 WUBlastX LINE_L1-Tx1 525935 526402 60 + . . scaffold1221 GLEAN mRNA 526417 526815 0.967384 + . ID=CGI_10019749; scaffold1221 WUBlastX LINE_L1-Tx1 526417 526815 22 + . . scaffold1221 GLEAN mRNA 525965 526258 0.967384 + . ID=CGI_10019749; scaffold1221 WUBlastX LINE_L1-Tx1 525965 526258 83 + . . scaffold1018 GLEAN mRNA 142158 142317 0.998491 - . ID=CGI_10019756; scaffold1018 TRF Tandem_Repeat 142158 142317 320 + . . scaffold1018 GLEAN mRNA 144385 144970 0.998491 - . ID=CGI_10019756; scaffold1018 TRF Tandem_Repeat 144385 144970 839 + . . scaffold1018 GLEAN mRNA 144385 144956 0.998491 - . ID=CGI_10019756; scaffold1018 TRF Tandem_Repeat 144385 144956 744 + . . scaffold1018 GLEAN mRNA 154182 154709 0.997518 + . ID=CGI_10019757; scaffold1018 TRF Tandem_Repeat 154182 154709 873 + . . scaffold1018 GLEAN mRNA 157741 157986 0.997518 + . ID=CGI_10019757; scaffold1018 TRF Tandem_Repeat 157741 157986 219 + . . scaffold1018 GLEAN mRNA 177688 177747 0.999538 - . ID=CGI_10019759; scaffold1018 TRF Tandem_Repeat 177688 177747 52 + . . scaffold1018 GLEAN mRNA 191919 191956 1 + . ID=CGI_10019760; scaffold1018 TRF Tandem_Repeat 191919 191956 60 + . . scaffold1018 GLEAN mRNA 237454 237547 0.965819 + . ID=CGI_10019761; scaffold1018 TRF Tandem_Repeat 237454 237547 152 + . . scaffold1018 GLEAN mRNA 263308 263348 0.606365 + . ID=CGI_10019762; scaffold1018 TRF Tandem_Repeat 263308 263348 82 + . . scaffold1018 GLEAN mRNA 262539 262754 0.606365 + . ID=CGI_10019762; scaffold1018 WUBlastX LINE_RTE-X 262539 262754 23 - . . scaffold1018 GLEAN mRNA 262406 262579 0.606365 + . ID=CGI_10019762; scaffold1018 WUBlastX LINE_RTE-X 262406 262579 58 - . . scaffold1018 GLEAN mRNA 262557 262676 0.606365 + . ID=CGI_10019762; scaffold1018 WUBlastX LINE_RTE-X 262557 262676 56 - . . scaffold1018 GLEAN mRNA 262409 262504 0.606365 + . ID=CGI_10019762; scaffold1018 WUBlastX LINE_RTE-X 262409 262504 62 - . . scaffold1018 GLEAN mRNA 310916 310962 0.998378 - . ID=CGI_10019766; scaffold1018 TRF Tandem_Repeat 310916 310962 94 + . . scaffold1018 GLEAN mRNA 332526 332681 0.998378 - . ID=CGI_10019766; scaffold1018 WUBlastX DNA_MuDR 332526 333356 47 - . . scaffold1018 GLEAN mRNA 441697 441868 0.992449 + . ID=CGI_10019772; scaffold1018 TRF Tandem_Repeat 441697 441868 263 + . . scaffold1018 GLEAN mRNA 439001 439888 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX DNA_En-Spm 439001 439888 296 + . . scaffold1018 GLEAN mRNA 439878 440300 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX DNA_En-Spm 439878 440300 126 + . . scaffold1018 GLEAN mRNA 442052 442276 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX LTR_Ngaro 442052 442276 118 + . . scaffold1018 GLEAN mRNA 439878 440483 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX DNA_En-Spm 439878 440483 96 + . . scaffold1018 GLEAN mRNA 443086 443117 0.992449 + . ID=CGI_10019772; scaffold1018 TRF Tandem_Repeat 443086 443117 55 + . . scaffold1018 GLEAN mRNA 445683 446478 0.992449 + . ID=CGI_10019772; scaffold1018 TRF Tandem_Repeat 445683 446478 1161 + . . scaffold1018 GLEAN mRNA 443833 444126 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX DNA_hAT-Tip100 443833 444126 83 + . . scaffold1018 GLEAN mRNA 445238 445474 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX DNA_hAT-Tip100 445238 445474 109 + . . scaffold1018 GLEAN mRNA 442052 442462 0.992449 + . ID=CGI_10019772; scaffold1018 WUBlastX LTR_Ngaro 442052 442462 75 + . . scaffold1018 GLEAN mRNA 441697 441868 0.542495 - . ID=CGI_10019773; scaffold1018 TRF Tandem_Repeat 441697 441868 263 + . . scaffold1018 GLEAN mRNA 439001 439888 0.542495 - . ID=CGI_10019773; scaffold1018 WUBlastX DNA_En-Spm 439001 439888 296 + . . scaffold1018 GLEAN mRNA 439878 440300 0.542495 - . ID=CGI_10019773; scaffold1018 WUBlastX DNA_En-Spm 439878 440300 126 + . . scaffold1018 GLEAN mRNA 442052 442276 0.542495 - . ID=CGI_10019773; scaffold1018 WUBlastX LTR_Ngaro 442052 442276 118 + . . scaffold1018 GLEAN mRNA 439878 440483 0.542495 - . ID=CGI_10019773; scaffold1018 WUBlastX DNA_En-Spm 439878 440483 96 + . . scaffold1018 GLEAN mRNA 442052 442462 0.542495 - . ID=CGI_10019773; scaffold1018 WUBlastX LTR_Ngaro 442052 442462 75 + . . scaffold1018 GLEAN mRNA 552694 552906 0.39343 + . ID=CGI_10019779; scaffold1018 WUBlastX LTR_Gypsy 552694 552906 30 - . . scaffold1018 GLEAN mRNA 551500 552525 0.39343 + . ID=CGI_10019779; scaffold1018 WUBlastX LTR_Gypsy 551500 552525 250 - . . scaffold1018 GLEAN mRNA 551251 552066 0.39343 + . ID=CGI_10019779; scaffold1018 WUBlastX LTR_Gypsy 551251 552066 112 - . . scaffold1018 GLEAN mRNA 551479 552228 0.39343 + . ID=CGI_10019779; scaffold1018 WUBlastX LTR_Gypsy 551479 552228 279 - . . scaffold1018 GLEAN mRNA 550483 550596 0.39343 + . ID=CGI_10019779; scaffold1018 WUBlastX LTR_Gypsy 550483 550596 33 - . . scaffold1018 GLEAN mRNA 559463 559487 0.39343 + . ID=CGI_10019779; scaffold1018 TRF Tandem_Repeat 559463 559487 50 + . . scaffold1018 GLEAN mRNA 571085 573070 0.537907 - . ID=CGI_10019780; scaffold1018 WUBlastX LTR_Pao 571085 573070 216 + . . scaffold1018 GLEAN mRNA 577984 578029 0.537907 - . ID=CGI_10019780; scaffold1018 TRF Tandem_Repeat 577984 578029 56 + . . scaffold1018 GLEAN mRNA 591839 592170 0.537907 - . ID=CGI_10019780; scaffold1018 TRF Tandem_Repeat 591839 592170 461 + . . scaffold1018 GLEAN mRNA 573031 577050 0.537907 - . ID=CGI_10019780; scaffold1018 WUBlastX LTR_Pao 573031 577050 3264 + . . scaffold1093 GLEAN mRNA 6597 6762 0.998505 - . ID=CGI_10019783; scaffold1093 TRF Tandem_Repeat 6597 6762 120 + . . scaffold1093 GLEAN mRNA 37843 37889 1 - . ID=CGI_10019785; scaffold1093 TRF Tandem_Repeat 37843 37889 85 + . . scaffold1093 GLEAN mRNA 83563 83610 0.558336 + . ID=CGI_10019787; scaffold1093 TRF Tandem_Repeat 83563 83610 96 + . . scaffold1093 GLEAN mRNA 82761 82955 0.558336 + . ID=CGI_10019787; scaffold1093 WUBlastX LINE_L2 82761 82955 39 + . . scaffold1093 GLEAN mRNA 82044 82265 0.558336 + . ID=CGI_10019787; scaffold1093 WUBlastX LINE_CR1-L2 82044 82265 83 + . . scaffold1093 GLEAN mRNA 81963 82223 0.558336 + . ID=CGI_10019787; scaffold1093 WUBlastX LINE_L2 81963 82223 67 + . . scaffold1093 GLEAN mRNA 117653 117851 0.429192 - . ID=CGI_10019791; scaffold1093 TRF Tandem_Repeat 117653 117851 310 + . . scaffold1093 GLEAN mRNA 127776 127870 0.531418 - . ID=CGI_10019792; scaffold1093 TRF Tandem_Repeat 127776 127870 74 + . . scaffold1093 GLEAN mRNA 127740 127869 0.531418 - . ID=CGI_10019792; scaffold1093 TRF Tandem_Repeat 127740 127869 131 + . . scaffold1093 GLEAN mRNA 134392 134436 0.531418 - . ID=CGI_10019792; scaffold1093 TRF Tandem_Repeat 134392 134436 90 + . . scaffold1093 GLEAN mRNA 142580 143739 0.531418 - . ID=CGI_10019792; scaffold1093 TRF Tandem_Repeat 142580 143739 1359 + . . scaffold1093 GLEAN mRNA 143332 143738 0.531418 - . ID=CGI_10019792; scaffold1093 TRF Tandem_Repeat 143332 143738 229 + . . scaffold1093 GLEAN mRNA 144801 144844 0.531418 - . ID=CGI_10019792; scaffold1093 TRF Tandem_Repeat 144801 144844 79 + . . scaffold1093 GLEAN mRNA 147372 147427 1 - . ID=CGI_10019793; scaffold1093 TRF Tandem_Repeat 147372 147427 112 + . . scaffold1093 GLEAN mRNA 149356 149414 1 - . ID=CGI_10019793; scaffold1093 TRF Tandem_Repeat 149356 149414 118 + . . scaffold1093 GLEAN mRNA 199450 199496 0.988682 - . ID=CGI_10019796; scaffold1093 TRF Tandem_Repeat 199450 199496 94 + . . scaffold1093 GLEAN mRNA 364492 364543 1 - . ID=CGI_10019803; scaffold1093 TRF Tandem_Repeat 364492 364543 104 + . . scaffold1093 GLEAN mRNA 404881 405039 0.987785 + . ID=CGI_10019807; scaffold1093 WUBlastX LINE_Penelope 404881 405039 55 - . . scaffold1093 GLEAN mRNA 404881 405096 0.987785 + . ID=CGI_10019807; scaffold1093 WUBlastX LINE_Penelope 404881 405096 28 - . . scaffold1093 GLEAN mRNA 405098 405415 0.987785 + . ID=CGI_10019807; scaffold1093 WUBlastX LINE_Penelope 405098 405415 65 - . . scaffold1093 GLEAN mRNA 405408 405791 0.987785 + . ID=CGI_10019807; scaffold1093 WUBlastX LINE_Penelope 405408 405791 37 - . . scaffold1093 GLEAN mRNA 404667 404882 0.987785 + . ID=CGI_10019807; scaffold1093 WUBlastX LINE_Penelope 404667 404882 58 - . . scaffold1093 GLEAN mRNA 405408 405659 0.987785 + . ID=CGI_10019807; scaffold1093 WUBlastX LINE_Penelope 405408 405659 61 - . . scaffold1093 GLEAN mRNA 404434 404619 0.987785 + . ID=CGI_10019807; scaffold1093 WUBlastX LINE_Penelope 404434 404619 33 - . . scaffold1093 GLEAN mRNA 404598 404882 0.987785 + . ID=CGI_10019807; scaffold1093 WUBlastX LINE_Penelope 404598 404882 42 - . . scaffold1093 GLEAN mRNA 404482 404580 0.987785 + . ID=CGI_10019807; scaffold1093 WUBlastX LINE_Penelope 404482 404580 41 - . . scaffold1093 GLEAN mRNA 405408 405581 0.987785 + . ID=CGI_10019807; scaffold1093 WUBlastX LINE_Penelope 405408 405581 106 - . . scaffold1093 GLEAN mRNA 424716 425009 0.981582 + . ID=CGI_10019808; scaffold1093 WUBlastX DNA_Sola 424716 425009 65 + . . scaffold1093 GLEAN mRNA 424635 425015 0.981582 + . ID=CGI_10019808; scaffold1093 WUBlastX DNA_Sola 424635 425015 58 + . . scaffold1093 GLEAN mRNA 424848 425048 0.981582 + . ID=CGI_10019808; scaffold1093 WUBlastX DNA_Sola 424848 425048 59 + . . scaffold1093 GLEAN mRNA 437370 437416 0.981582 + . ID=CGI_10019808; scaffold1093 TRF Tandem_Repeat 437370 437416 94 + . . scaffold1093 GLEAN mRNA 438703 438756 0.981582 + . ID=CGI_10019808; scaffold1093 TRF Tandem_Repeat 438703 438756 76 + . . scaffold1093 GLEAN mRNA 440022 440058 0.981582 + . ID=CGI_10019808; scaffold1093 TRF Tandem_Repeat 440022 440058 51 + . . scaffold1093 GLEAN mRNA 442370 442518 0.981582 + . ID=CGI_10019808; scaffold1093 TRF Tandem_Repeat 442370 442518 199 + . . scaffold1093 GLEAN mRNA 443396 443553 0.981582 + . ID=CGI_10019808; scaffold1093 TRF Tandem_Repeat 443396 443553 158 + . . scaffold1093 GLEAN mRNA 443535 444091 0.981582 + . ID=CGI_10019808; scaffold1093 TRF Tandem_Repeat 443535 444091 817 + . . scaffold1093 GLEAN mRNA 444678 444777 0.981582 + . ID=CGI_10019808; scaffold1093 TRF Tandem_Repeat 444678 444777 107 + . . scaffold1093 GLEAN mRNA 450039 450418 0.981582 + . ID=CGI_10019808; scaffold1093 TRF Tandem_Repeat 450039 450418 391 + . . scaffold1093 GLEAN mRNA 590231 590258 0.785399 + . ID=CGI_10019815; scaffold1093 TRF Tandem_Repeat 590231 590258 56 + . . scaffold1093 GLEAN mRNA 601715 601763 0.785399 + . ID=CGI_10019815; scaffold1093 TRF Tandem_Repeat 601715 601763 89 + . . scaffold563 GLEAN mRNA 37560 37680 0.362367 - . ID=CGI_10019817; scaffold563 TRF Tandem_Repeat 37560 37680 127 + . . scaffold563 GLEAN mRNA 39353 39389 0.362367 - . ID=CGI_10019817; scaffold563 TRF Tandem_Repeat 39353 39389 74 + . . scaffold563 GLEAN mRNA 43539 43578 0.362367 - . ID=CGI_10019817; scaffold563 TRF Tandem_Repeat 43539 43578 55 + . . scaffold563 GLEAN mRNA 48535 48783 0.362367 - . ID=CGI_10019817; scaffold563 WUBlastX LINE_RTE-X 48535 48783 41 - . . scaffold563 GLEAN mRNA 48922 48978 0.362367 - . ID=CGI_10019817; scaffold563 WUBlastX LINE_RTE-X 48922 48978 25 - . . scaffold563 GLEAN mRNA 51201 51254 0.362367 - . ID=CGI_10019817; scaffold563 TRF Tandem_Repeat 51201 51254 72 + . . scaffold563 GLEAN mRNA 54336 54399 0.362367 - . ID=CGI_10019817; scaffold563 TRF Tandem_Repeat 54336 54399 83 + . . scaffold563 GLEAN mRNA 82238 82276 0.99976 + . ID=CGI_10019818; scaffold563 TRF Tandem_Repeat 82238 82276 69 + . . scaffold563 GLEAN mRNA 89934 89983 0.813969 + . ID=CGI_10019820; scaffold563 TRF Tandem_Repeat 89934 89983 100 + . . scaffold563 GLEAN mRNA 94375 94474 0.813969 + . ID=CGI_10019820; scaffold563 TRF Tandem_Repeat 94375 94474 164 + . . scaffold563 GLEAN mRNA 94357 94474 0.813969 + . ID=CGI_10019820; scaffold563 TRF Tandem_Repeat 94357 94474 139 + . . scaffold563 GLEAN mRNA 94907 94942 0.813969 + . ID=CGI_10019820; scaffold563 TRF Tandem_Repeat 94907 94942 72 + . . scaffold563 GLEAN mRNA 97563 97685 0.813969 + . ID=CGI_10019820; scaffold563 TRF Tandem_Repeat 97563 97685 176 + . . scaffold563 GLEAN mRNA 194947 194987 0.548684 + . ID=CGI_10019823; scaffold563 TRF Tandem_Repeat 194947 194987 82 + . . scaffold563 GLEAN mRNA 224070 224426 0.703326 - . ID=CGI_10019825; scaffold563 WUBlastX LINE_Penelope 224070 224426 49 - . . scaffold563 GLEAN mRNA 242363 242403 0.920527 - . ID=CGI_10019827; scaffold563 TRF Tandem_Repeat 242363 242403 55 + . . scaffold563 GLEAN mRNA 321914 322511 0.790146 + . ID=CGI_10019832; scaffold563 TRF Tandem_Repeat 321914 322511 606 + . . scaffold563 GLEAN mRNA 325598 325683 0.790146 + . ID=CGI_10019832; scaffold563 TRF Tandem_Repeat 325598 325683 172 + . . scaffold563 GLEAN mRNA 327840 327891 0.790146 + . ID=CGI_10019832; scaffold563 TRF Tandem_Repeat 327840 327891 88 + . . scaffold563 GLEAN mRNA 330936 331160 0.790146 + . ID=CGI_10019832; scaffold563 TRF Tandem_Repeat 330936 331160 294 + . . scaffold563 GLEAN mRNA 378060 378296 0.613364 - . ID=CGI_10019837; scaffold563 WUBlastX LINE_RTE-X 378060 378296 59 + . . scaffold563 GLEAN mRNA 384717 384769 0.990769 + . ID=CGI_10019838; scaffold563 TRF Tandem_Repeat 384717 384769 106 + . . scaffold563 GLEAN mRNA 407323 407375 0.813574 - . ID=CGI_10019840; scaffold563 TRF Tandem_Repeat 407323 407375 97 + . . scaffold563 GLEAN mRNA 409860 409945 0.813574 - . ID=CGI_10019840; scaffold563 TRF Tandem_Repeat 409860 409945 172 + . . scaffold563 GLEAN mRNA 414878 414970 0.813574 - . ID=CGI_10019840; scaffold563 TRF Tandem_Repeat 414878 414970 96 + . . scaffold563 GLEAN mRNA 414888 414978 0.813574 - . ID=CGI_10019840; scaffold563 TRF Tandem_Repeat 414888 414978 110 + . . scaffold563 GLEAN mRNA 417454 417505 0.813574 - . ID=CGI_10019840; scaffold563 TRF Tandem_Repeat 417454 417505 104 + . . scaffold563 GLEAN mRNA 418742 419092 0.813574 - . ID=CGI_10019840; scaffold563 TRF Tandem_Repeat 418742 419092 195 + . . scaffold563 GLEAN mRNA 418742 419131 0.813574 - . ID=CGI_10019840; scaffold563 TRF Tandem_Repeat 418742 419131 182 + . . scaffold563 GLEAN mRNA 418741 419092 0.813574 - . ID=CGI_10019840; scaffold563 TRF Tandem_Repeat 418741 419092 275 + . . scaffold563 GLEAN mRNA 418955 419131 0.813574 - . ID=CGI_10019840; scaffold563 TRF Tandem_Repeat 418955 419131 137 + . . scaffold563 GLEAN mRNA 424279 424320 0.999394 + . ID=CGI_10019842; scaffold563 TRF Tandem_Repeat 424279 424320 84 + . . scaffold563 GLEAN mRNA 429336 429572 0.999394 + . ID=CGI_10019842; scaffold563 TRF Tandem_Repeat 429336 429572 402 + . . scaffold563 GLEAN mRNA 429760 429935 0.999394 + . ID=CGI_10019842; scaffold563 TRF Tandem_Repeat 429760 429935 262 + . . scaffold563 GLEAN mRNA 470136 470267 0.653133 + . ID=CGI_10019843; scaffold563 TRF Tandem_Repeat 470136 470267 180 + . . scaffold563 GLEAN mRNA 473624 473663 0.653133 + . ID=CGI_10019843; scaffold563 TRF Tandem_Repeat 473624 473663 62 + . . scaffold563 GLEAN mRNA 495030 495066 0.653133 + . ID=CGI_10019843; scaffold563 TRF Tandem_Repeat 495030 495066 74 + . . scaffold563 GLEAN mRNA 498879 499651 0.653133 + . ID=CGI_10019843; scaffold563 TRF Tandem_Repeat 498879 499651 1021 + . . scaffold563 GLEAN mRNA 506183 506280 0.653133 + . ID=CGI_10019843; scaffold563 TRF Tandem_Repeat 506183 506280 135 + . . scaffold563 GLEAN mRNA 505578 505799 0.653133 + . ID=CGI_10019843; scaffold563 WUBlastX DNA_TcMar-Marin 505578 505799 87 - . . scaffold563 GLEAN mRNA 505524 505829 0.653133 + . ID=CGI_10019843; scaffold563 WUBlastX DNA_TcMar-Marin 505524 505829 65 - . . scaffold563 GLEAN mRNA 508533 508635 0.653133 + . ID=CGI_10019843; scaffold563 TRF Tandem_Repeat 508533 508635 145 + . . scaffold563 GLEAN mRNA 511248 511478 0.653133 + . ID=CGI_10019843; scaffold563 WUBlastX LINE_L1-Tx1 511248 511478 38 + . . scaffold563 GLEAN mRNA 509282 511066 0.653133 + . ID=CGI_10019843; scaffold563 WUBlastX LINE_L1-Tx1 509282 511066 408 + . . scaffold563 GLEAN mRNA 509094 509255 0.653133 + . ID=CGI_10019843; scaffold563 WUBlastX LINE_L1 509094 509255 32 + . . scaffold563 GLEAN mRNA 509282 510442 0.653133 + . ID=CGI_10019843; scaffold563 WUBlastX LINE_L1 509282 510442 436 + . . scaffold563 GLEAN mRNA 511110 511463 0.653133 + . ID=CGI_10019843; scaffold563 WUBlastX LINE_L1 511110 511463 29 + . . scaffold563 GLEAN mRNA 542209 542307 0.999955 - . ID=CGI_10019845; scaffold563 WUBlastX LTR_Gypsy 542209 542634 54 - . . scaffold563 GLEAN mRNA 542480 542634 0.135238 + . ID=CGI_10019846; scaffold563 WUBlastX LTR_Gypsy 542209 542634 54 - . . scaffold563 GLEAN mRNA 565716 565893 0.135238 + . ID=CGI_10019846; scaffold563 TRF Tandem_Repeat 565716 565893 83 + . . scaffold563 GLEAN mRNA 566414 566649 0.135238 + . ID=CGI_10019846; scaffold563 TRF Tandem_Repeat 566414 566649 363 + . . scaffold563 GLEAN mRNA 566477 566605 0.135238 + . ID=CGI_10019846; scaffold563 TRF Tandem_Repeat 566477 566605 75 + . . scaffold563 GLEAN mRNA 558888 559034 0.135238 + . ID=CGI_10019846; scaffold563 WUBlastX LINE_R2-Hero 558888 559034 45 - . . scaffold563 GLEAN mRNA 558410 558874 0.135238 + . ID=CGI_10019846; scaffold563 WUBlastX LINE_R2-Hero 558410 558874 337 - . . scaffold563 GLEAN mRNA 578202 578899 0.135238 + . ID=CGI_10019846; scaffold563 TRF Tandem_Repeat 578202 578899 988 + . . scaffold563 GLEAN mRNA 582943 583100 0.135238 + . ID=CGI_10019846; scaffold563 TRF Tandem_Repeat 582943 583100 298 + . . scaffold563 GLEAN mRNA 587399 587447 0.135238 + . ID=CGI_10019846; scaffold563 TRF Tandem_Repeat 587399 587447 62 + . . scaffold563 GLEAN mRNA 595847 596133 1 - . ID=CGI_10019847; scaffold563 TRF Tandem_Repeat 595847 596133 412 + . . scaffold1512 GLEAN mRNA 31110 31155 0.216715 + . ID=CGI_10019850; scaffold1512 TRF Tandem_Repeat 31110 31155 58 + . . scaffold1512 GLEAN mRNA 31747 31793 0.216715 + . ID=CGI_10019850; scaffold1512 TRF Tandem_Repeat 31747 31793 58 + . . scaffold1512 GLEAN mRNA 103903 104904 0.999842 - . ID=CGI_10019851; scaffold1512 WUBlastX LTR_Gypsy 103903 104904 435 - . . scaffold1512 GLEAN mRNA 109814 109969 0.999842 - . ID=CGI_10019851; scaffold1512 WUBlastX LTR_Gypsy 109814 109969 25 - . . scaffold1512 GLEAN mRNA 108350 109927 0.999842 - . ID=CGI_10019851; scaffold1512 WUBlastX LTR_Gypsy 108350 109927 375 - . . scaffold1512 GLEAN mRNA 108227 108421 0.999842 - . ID=CGI_10019851; scaffold1512 WUBlastX LTR_Gypsy 108227 108421 83 - . . scaffold1512 GLEAN mRNA 108542 109861 0.999842 - . ID=CGI_10019851; scaffold1512 WUBlastX LTR_Gypsy 108542 109861 1264 - . . scaffold1512 GLEAN mRNA 107363 107857 0.999842 - . ID=CGI_10019851; scaffold1512 WUBlastX LTR_Gypsy 107363 107857 121 - . . scaffold1512 GLEAN mRNA 182541 182573 0.265 - . ID=CGI_10019855; scaffold1512 TRF Tandem_Repeat 182541 182573 66 + . . scaffold1512 GLEAN mRNA 182541 182573 0.220558 + . ID=CGI_10019856; scaffold1512 TRF Tandem_Repeat 182541 182573 66 + . . scaffold1512 GLEAN mRNA 197973 198071 0.76379 + . ID=CGI_10019857; scaffold1512 TRF Tandem_Repeat 197973 198071 83 + . . scaffold1512 GLEAN mRNA 199113 199206 0.76379 + . ID=CGI_10019857; scaffold1512 TRF Tandem_Repeat 199113 199206 109 + . . scaffold1512 GLEAN mRNA 299738 299766 1 - . ID=CGI_10019863; scaffold1512 TRF Tandem_Repeat 299738 299766 51 + . . scaffold1512 GLEAN mRNA 343886 343917 0.27871 + . ID=CGI_10019866; scaffold1512 TRF Tandem_Repeat 343886 343917 55 + . . scaffold1512 GLEAN mRNA 499737 499794 0.641037 - . ID=CGI_10019873; scaffold1512 WUBlastX LINE_RTE-BovB 499737 499943 76 + . . scaffold1512 GLEAN mRNA 526667 527019 0.835748 - . ID=CGI_10019876; scaffold1512 TRF Tandem_Repeat 526667 527019 514 + . . scaffold1512 GLEAN mRNA 592445 593569 0.799199 - . ID=CGI_10019880; scaffold1512 TRF Tandem_Repeat 592445 593569 1562 + . . scaffold1512 GLEAN mRNA 593600 593659 0.799199 - . ID=CGI_10019880; scaffold1512 TRF Tandem_Repeat 593600 593659 75 + . . scaffold1512 GLEAN mRNA 593596 593658 0.799199 - . ID=CGI_10019880; scaffold1512 TRF Tandem_Repeat 593596 593658 99 + . . scaffold1512 GLEAN mRNA 593593 593658 0.799199 - . ID=CGI_10019880; scaffold1512 TRF Tandem_Repeat 593593 593658 105 + . . scaffold730 GLEAN mRNA 102610 103008 0.69447 - . ID=CGI_10019887; scaffold730 WUBlastX DNA_Maverick 102610 103080 23 - . . scaffold730 GLEAN mRNA 115763 115928 0.404014 + . ID=CGI_10019888; scaffold730 TRF Tandem_Repeat 115763 115928 217 + . . scaffold730 GLEAN mRNA 139615 139794 0.404014 + . ID=CGI_10019888; scaffold730 TRF Tandem_Repeat 139615 139794 267 + . . scaffold730 GLEAN mRNA 135552 135671 0.404014 + . ID=CGI_10019888; scaffold730 WUBlastX DNA_Kolobok 135552 135671 31 + . . scaffold730 GLEAN mRNA 271145 271181 0.998589 - . ID=CGI_10019892; scaffold730 TRF Tandem_Repeat 271145 271181 56 + . . scaffold730 GLEAN mRNA 271319 271365 0.998589 - . ID=CGI_10019892; scaffold730 TRF Tandem_Repeat 271319 271365 53 + . . scaffold730 GLEAN mRNA 267198 267452 0.998589 - . ID=CGI_10019892; scaffold730 WUBlastX LINE_RTE-X 267198 267452 61 - . . scaffold730 GLEAN mRNA 267276 267833 0.998589 - . ID=CGI_10019892; scaffold730 WUBlastX LINE_RTE-X 267276 267833 120 - . . scaffold730 GLEAN mRNA 267814 267912 0.998589 - . ID=CGI_10019892; scaffold730 WUBlastX LINE_RTE-X 267814 267912 23 - . . scaffold730 GLEAN mRNA 349943 349973 1 + . ID=CGI_10019894; scaffold730 TRF Tandem_Repeat 349943 349973 62 + . . scaffold730 GLEAN mRNA 350055 350603 1 + . ID=CGI_10019894; scaffold730 TRF Tandem_Repeat 350055 350603 698 + . . scaffold730 GLEAN mRNA 350055 350603 1 + . ID=CGI_10019894; scaffold730 TRF Tandem_Repeat 350055 350603 713 + . . scaffold730 GLEAN mRNA 352818 353312 1 + . ID=CGI_10019894; scaffold730 TRF Tandem_Repeat 352818 353312 864 + . . scaffold730 GLEAN mRNA 353282 353566 1 + . ID=CGI_10019894; scaffold730 TRF Tandem_Repeat 353282 353566 151 + . . scaffold730 GLEAN mRNA 353528 353904 1 + . ID=CGI_10019894; scaffold730 TRF Tandem_Repeat 353528 353904 655 + . . scaffold730 GLEAN mRNA 371200 371532 0.587782 - . ID=CGI_10019895; scaffold730 WUBlastX LINE_L1-Tx1 371200 371532 48 - . . scaffold730 GLEAN mRNA 384291 384318 0.587782 - . ID=CGI_10019895; scaffold730 TRF Tandem_Repeat 384291 384318 56 + . . scaffold730 GLEAN mRNA 384875 385004 0.587782 - . ID=CGI_10019895; scaffold730 TRF Tandem_Repeat 384875 385004 136 + . . scaffold730 GLEAN mRNA 385138 385229 0.587782 - . ID=CGI_10019895; scaffold730 TRF Tandem_Repeat 385138 385229 121 + . . scaffold730 GLEAN mRNA 387746 388087 0.587782 - . ID=CGI_10019895; scaffold730 WUBlastX DNA_Crypton 387746 388087 72 - . . scaffold730 GLEAN mRNA 388453 389073 0.587782 - . ID=CGI_10019895; scaffold730 WUBlastX DNA_Crypton 388453 389073 65 - . . scaffold730 GLEAN mRNA 431832 432221 0.998255 - . ID=CGI_10019899; scaffold730 TRF Tandem_Repeat 431832 432221 501 + . . scaffold730 GLEAN mRNA 431832 432221 0.998255 - . ID=CGI_10019899; scaffold730 TRF Tandem_Repeat 431832 432221 512 + . . scaffold730 GLEAN mRNA 437801 437887 0.998255 - . ID=CGI_10019899; scaffold730 TRF Tandem_Repeat 437801 437887 165 + . . scaffold730 GLEAN mRNA 443149 443432 0.998255 - . ID=CGI_10019899; scaffold730 TRF Tandem_Repeat 443149 443432 434 + . . scaffold730 GLEAN mRNA 445736 445917 0.998255 - . ID=CGI_10019899; scaffold730 TRF Tandem_Repeat 445736 445917 173 + . . scaffold730 GLEAN mRNA 453798 454317 0.998255 - . ID=CGI_10019899; scaffold730 TRF Tandem_Repeat 453798 454317 519 + . . scaffold730 GLEAN mRNA 453804 454317 0.998255 - . ID=CGI_10019899; scaffold730 TRF Tandem_Repeat 453804 454317 573 + . . scaffold730 GLEAN mRNA 453804 454317 0.998255 - . ID=CGI_10019899; scaffold730 TRF Tandem_Repeat 453804 454317 614 + . . scaffold730 GLEAN mRNA 453887 454057 0.998255 - . ID=CGI_10019899; scaffold730 TRF Tandem_Repeat 453887 454057 163 + . . scaffold730 GLEAN mRNA 431832 432221 1 + . ID=CGI_10019900; scaffold730 TRF Tandem_Repeat 431832 432221 501 + . . scaffold730 GLEAN mRNA 431832 432221 1 + . ID=CGI_10019900; scaffold730 TRF Tandem_Repeat 431832 432221 512 + . . scaffold730 GLEAN mRNA 437801 437887 1 + . ID=CGI_10019901; scaffold730 TRF Tandem_Repeat 437801 437887 165 + . . scaffold730 GLEAN mRNA 465960 466121 0.99904 + . ID=CGI_10019904; scaffold730 TRF Tandem_Repeat 465960 466121 315 + . . scaffold730 GLEAN mRNA 468912 468987 0.99904 + . ID=CGI_10019904; scaffold730 TRF Tandem_Repeat 468912 468987 57 + . . scaffold730 GLEAN mRNA 472084 472680 0.61701 - . ID=CGI_10019905; scaffold730 WUBlastX LTR_Gypsy 472084 472680 37 - . . scaffold730 GLEAN mRNA 512823 513132 0.98119 - . ID=CGI_10019906; scaffold730 TRF Tandem_Repeat 512823 513132 566 + . . scaffold730 GLEAN mRNA 515948 515996 0.98119 - . ID=CGI_10019906; scaffold730 TRF Tandem_Repeat 515948 515996 98 + . . scaffold730 GLEAN mRNA 531958 532030 0.932897 + . ID=CGI_10019907; scaffold730 TRF Tandem_Repeat 531958 532030 146 + . . scaffold1788 GLEAN mRNA 6482 8131 0.618655 + . ID=CGI_10019910; scaffold1788 WUBlastX DNA_hAT-Tip100 6482 8131 265 + . . scaffold1788 GLEAN mRNA 6293 7417 0.618655 + . ID=CGI_10019910; scaffold1788 WUBlastX DNA_hAT-Tip100 6293 7417 492 + . . scaffold1788 GLEAN mRNA 17987 18955 0.618655 + . ID=CGI_10019910; scaffold1788 WUBlastX LINE_CR1-L2 17987 18955 606 + . . scaffold1788 GLEAN mRNA 17847 18014 0.618655 + . ID=CGI_10019910; scaffold1788 WUBlastX LINE_CR1-L2 17847 18014 89 + . . scaffold1788 GLEAN mRNA 17721 17987 0.618655 + . ID=CGI_10019910; scaffold1788 WUBlastX LINE_Rex-Babar 17721 17987 49 + . . scaffold1788 GLEAN mRNA 18907 19641 0.618655 + . ID=CGI_10019910; scaffold1788 WUBlastX LINE_CR1-L2 18907 19641 214 + . . scaffold1788 GLEAN mRNA 17987 19150 0.618655 + . ID=CGI_10019910; scaffold1788 WUBlastX LINE_L2 17987 19150 308 + . . scaffold1788 GLEAN mRNA 17784 18011 0.618655 + . ID=CGI_10019910; scaffold1788 WUBlastX LINE_CR1-L2 17784 18011 84 + . . scaffold1788 GLEAN mRNA 45790 45939 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX RC_Helitron 45790 45939 68 - . . scaffold1788 GLEAN mRNA 47228 47767 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX LINE_L1-Tx1 47228 47767 266 + . . scaffold1788 GLEAN mRNA 46211 46294 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX RC_Helitron 46211 46294 25 - . . scaffold1788 GLEAN mRNA 47120 47644 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX LINE_L1 47120 47644 162 + . . scaffold1788 GLEAN mRNA 45566 45715 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX RC_Helitron 45566 45715 102 - . . scaffold1788 GLEAN mRNA 47210 47650 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX LINE_L1-Tx1 47210 47650 360 + . . scaffold1788 GLEAN mRNA 46187 46294 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_Helitron 46187 46294 22 - . . scaffold1788 GLEAN mRNA 45572 45745 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX RC_Helitron 45572 45745 50 - . . scaffold1788 GLEAN mRNA 45691 45933 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX RC_Helitron 45691 45933 30 - . . scaffold1788 GLEAN mRNA 49380 50501 0.656466 - . ID=CGI_10019913; scaffold1788 TRF Tandem_Repeat 49380 50501 1449 + . . scaffold1788 GLEAN mRNA 50595 50819 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX LINE_L1-Tx1 50595 50819 95 + . . scaffold1788 GLEAN mRNA 56746 57120 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_Maverick 56746 57120 208 - . . scaffold1788 GLEAN mRNA 57825 57941 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_Maverick 57825 57941 37 - . . scaffold1788 GLEAN mRNA 51772 52269 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX LINE_L1-Tx1 51772 52269 88 + . . scaffold1788 GLEAN mRNA 50855 51742 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX LINE_L1-Tx1 50855 51742 259 + . . scaffold1788 GLEAN mRNA 53229 53552 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_Maverick 53229 53552 60 - . . scaffold1788 GLEAN mRNA 50580 50867 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX LINE_L1-Tx1 50580 50867 88 + . . scaffold1788 GLEAN mRNA 51763 52188 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX LINE_L1-Tx1 51763 52188 104 + . . scaffold1788 GLEAN mRNA 64040 64144 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_IS4EU 64040 64144 55 + . . scaffold1788 GLEAN mRNA 57132 57293 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_Maverick 57132 57293 115 - . . scaffold1788 GLEAN mRNA 51760 52389 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX LINE_L1-Tx1 51760 52389 25 + . . scaffold1788 GLEAN mRNA 57161 57691 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_Maverick 57161 57691 134 - . . scaffold1788 GLEAN mRNA 57248 57763 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_Maverick 57248 57763 219 - . . scaffold1788 GLEAN mRNA 57825 57983 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_Maverick 57825 57983 30 - . . scaffold1788 GLEAN mRNA 64680 64763 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_IS4EU 64680 64763 23 + . . scaffold1788 GLEAN mRNA 65034 65135 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_IS4EU 65034 65135 63 + . . scaffold1788 GLEAN mRNA 65013 65135 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_Kolobok-IS4 65013 65135 40 + . . scaffold1788 GLEAN mRNA 65321 66073 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX DNA_Kolobok-IS4 65321 66073 312 - . . scaffold1788 GLEAN mRNA 145358 146269 0.834492 + . ID=CGI_10019917; scaffold1788 TRF Tandem_Repeat 145358 146269 1565 + . . scaffold1788 GLEAN mRNA 166496 166565 1 - . ID=CGI_10019919; scaffold1788 TRF Tandem_Repeat 166496 166565 68 + . . scaffold1788 GLEAN mRNA 168305 168647 1 - . ID=CGI_10019919; scaffold1788 TRF Tandem_Repeat 168305 168647 614 + . . scaffold1788 GLEAN mRNA 176519 176552 1 - . ID=CGI_10019920; scaffold1788 TRF Tandem_Repeat 176519 176552 68 + . . scaffold1788 GLEAN mRNA 223946 223998 0.885693 + . ID=CGI_10019921; scaffold1788 TRF Tandem_Repeat 223946 223998 106 + . . scaffold1788 GLEAN mRNA 224275 224318 0.885693 + . ID=CGI_10019921; scaffold1788 TRF Tandem_Repeat 224275 224318 88 + . . scaffold1788 GLEAN mRNA 230802 230849 0.885693 + . ID=CGI_10019921; scaffold1788 TRF Tandem_Repeat 230802 230849 96 + . . scaffold1788 GLEAN mRNA 250126 250160 0.885693 + . ID=CGI_10019921; scaffold1788 TRF Tandem_Repeat 250126 250160 70 + . . scaffold1788 GLEAN mRNA 261960 262144 0.885693 + . ID=CGI_10019921; scaffold1788 TRF Tandem_Repeat 261960 262144 203 + . . scaffold1788 GLEAN mRNA 261960 262199 0.885693 + . ID=CGI_10019921; scaffold1788 TRF Tandem_Repeat 261960 262199 165 + . . scaffold1788 GLEAN mRNA 297912 298008 1 - . ID=CGI_10019922; scaffold1788 TRF Tandem_Repeat 297912 298008 185 + . . scaffold1788 GLEAN mRNA 331946 332004 0.999999 - . ID=CGI_10019923; scaffold1788 TRF Tandem_Repeat 331946 332004 111 + . . scaffold1788 GLEAN mRNA 336436 336475 0.999521 - . ID=CGI_10019924; scaffold1788 TRF Tandem_Repeat 336436 336475 71 + . . scaffold1788 GLEAN mRNA 340745 341499 0.999521 - . ID=CGI_10019924; scaffold1788 TRF Tandem_Repeat 340745 341499 1151 + . . scaffold1788 GLEAN mRNA 369127 369173 0.999415 - . ID=CGI_10019925; scaffold1788 TRF Tandem_Repeat 369127 369173 94 + . . scaffold1788 GLEAN mRNA 396613 397344 0.999999 + . ID=CGI_10019927; scaffold1788 WUBlastX LINE_L2 395806 397344 1019 + . . scaffold1788 GLEAN mRNA 431235 431349 0.99912 - . ID=CGI_10019932; scaffold1788 TRF Tandem_Repeat 431235 431349 169 + . . scaffold1788 GLEAN mRNA 434081 434701 0.99912 - . ID=CGI_10019932; scaffold1788 TRF Tandem_Repeat 434081 434701 872 + . . scaffold1788 GLEAN mRNA 434081 434701 0.99912 - . ID=CGI_10019932; scaffold1788 TRF Tandem_Repeat 434081 434701 917 + . . scaffold1788 GLEAN mRNA 436944 436977 0.99912 - . ID=CGI_10019932; scaffold1788 TRF Tandem_Repeat 436944 436977 68 + . . scaffold1788 GLEAN mRNA 450665 450813 0.999598 - . ID=CGI_10019933; scaffold1788 TRF Tandem_Repeat 450665 450813 97 + . . scaffold1788 GLEAN mRNA 450729 450875 0.999598 - . ID=CGI_10019933; scaffold1788 TRF Tandem_Repeat 450729 450875 73 + . . scaffold1788 GLEAN mRNA 451820 452613 0.999598 - . ID=CGI_10019933; scaffold1788 TRF Tandem_Repeat 451820 452613 734 + . . scaffold1788 GLEAN mRNA 459934 459972 0.999598 - . ID=CGI_10019933; scaffold1788 TRF Tandem_Repeat 459934 459972 78 + . . scaffold1788 GLEAN mRNA 504434 504502 0.99883 + . ID=CGI_10019934; scaffold1788 TRF Tandem_Repeat 504434 504502 65 + . . scaffold1788 GLEAN mRNA 541465 542375 0.999027 - . ID=CGI_10019939; scaffold1788 TRF Tandem_Repeat 541465 542375 1294 + . . scaffold1788 GLEAN mRNA 595745 595774 0.975766 + . ID=CGI_10019941; scaffold1788 TRF Tandem_Repeat 595745 595774 51 + . . scaffold1788 GLEAN mRNA 600782 601075 0.975766 + . ID=CGI_10019941; scaffold1788 WUBlastX LINE_R2-Hero 600782 601990 125 + . . scaffold1788 GLEAN mRNA 600992 601075 0.975766 + . ID=CGI_10019941; scaffold1788 WUBlastX LINE_R2-Hero 600992 602089 192 + . . scaffold1036 GLEAN mRNA 71238 71411 0.755696 - . ID=CGI_10019943; scaffold1036 WUBlastX DNA_IS4EU 71238 71411 82 + . . scaffold1036 GLEAN mRNA 68299 68433 0.755696 - . ID=CGI_10019943; scaffold1036 WUBlastX DNA_IS4EU 68299 68433 45 + . . scaffold1036 GLEAN mRNA 67772 68227 0.755696 - . ID=CGI_10019943; scaffold1036 WUBlastX DNA_IS4EU 67772 68227 52 + . . scaffold1036 GLEAN mRNA 69276 69509 0.755696 - . ID=CGI_10019943; scaffold1036 WUBlastX DNA_Kolobok-IS4 69276 69509 110 - . . scaffold1036 GLEAN mRNA 67360 67542 0.755696 - . ID=CGI_10019943; scaffold1036 WUBlastX DNA_IS4EU 67360 67542 33 + . . scaffold1036 GLEAN mRNA 68033 68272 0.755696 - . ID=CGI_10019943; scaffold1036 WUBlastX DNA_IS4EU 68033 68272 42 + . . scaffold1036 GLEAN mRNA 71116 71235 0.755696 - . ID=CGI_10019943; scaffold1036 WUBlastX DNA_Kolobok-IS4 71116 71235 25 + . . scaffold1036 GLEAN mRNA 71226 71438 0.755696 - . ID=CGI_10019943; scaffold1036 WUBlastX DNA_Kolobok-IS4 71226 71438 76 + . . scaffold1036 GLEAN mRNA 67913 68215 0.755696 - . ID=CGI_10019943; scaffold1036 WUBlastX DNA_IS4EU 67913 68215 61 + . . scaffold1036 GLEAN mRNA 85881 85910 1 - . ID=CGI_10019945; scaffold1036 TRF Tandem_Repeat 85881 85910 51 + . . scaffold1036 GLEAN mRNA 135395 136285 0.999413 + . ID=CGI_10019950; scaffold1036 WUBlastX LINE_L1 135395 136285 25 + . . scaffold1036 GLEAN mRNA 176882 177011 0.593142 - . ID=CGI_10019951; scaffold1036 TRF Tandem_Repeat 176882 177011 176 + . . scaffold1036 GLEAN mRNA 177371 177397 0.593142 - . ID=CGI_10019951; scaffold1036 TRF Tandem_Repeat 177371 177397 54 + . . scaffold1036 GLEAN mRNA 167250 168185 0.593142 - . ID=CGI_10019951; scaffold1036 WUBlastX LINE_RTE-X 167250 168185 562 + . . scaffold1036 GLEAN mRNA 174808 175119 0.593142 - . ID=CGI_10019951; scaffold1036 WUBlastX DNA_TcMar-Tc1 174808 175119 109 + . . scaffold1036 GLEAN mRNA 173362 173784 0.593142 - . ID=CGI_10019951; scaffold1036 WUBlastX DNA_TcMar-Tc1 173362 173784 98 + . . scaffold1036 GLEAN mRNA 174736 175119 0.593142 - . ID=CGI_10019951; scaffold1036 WUBlastX DNA_TcMar-Tc1 174736 175119 22 + . . scaffold1036 GLEAN mRNA 175088 175396 0.593142 - . ID=CGI_10019951; scaffold1036 WUBlastX DNA_TcMar-Tc1 175088 175396 144 + . . scaffold1036 GLEAN mRNA 202361 202837 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 202361 202837 219 - . . scaffold1036 GLEAN mRNA 203226 203390 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 203226 203390 76 - . . scaffold1036 GLEAN mRNA 202831 203238 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 202831 203238 129 - . . scaffold1036 GLEAN mRNA 202062 202072 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 201074 202072 412 + . . scaffold1036 GLEAN mRNA 203247 203441 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 203247 203441 62 - . . scaffold1036 GLEAN mRNA 205040 205228 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 205040 205228 48 - . . scaffold1036 GLEAN mRNA 205658 205924 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 205658 205924 66 - . . scaffold1036 GLEAN mRNA 202433 202915 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 202433 202915 187 - . . scaffold1036 GLEAN mRNA 204877 205002 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 204877 205002 48 - . . scaffold1036 GLEAN mRNA 205028 205279 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 205028 205279 26 - . . scaffold1036 GLEAN mRNA 205739 205936 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 205739 205936 91 - . . scaffold1036 GLEAN mRNA 202080 202436 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 202080 202436 143 - . . scaffold1036 GLEAN mRNA 202430 202834 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 202430 202834 230 - . . scaffold1036 GLEAN mRNA 205544 205930 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 205544 205930 56 - . . scaffold1036 GLEAN mRNA 205025 205123 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 205025 205123 39 - . . scaffold1036 GLEAN mRNA 241964 242613 0.994909 + . ID=CGI_10019957; scaffold1036 TRF Tandem_Repeat 241964 242613 870 + . . scaffold1036 GLEAN mRNA 234004 235065 0.994909 + . ID=CGI_10019957; scaffold1036 WUBlastX LINE_CR1 234004 235065 886 - . . scaffold1036 GLEAN mRNA 243924 243995 0.994909 + . ID=CGI_10019957; scaffold1036 WUBlastX LINE_L1-Tx1 243924 243995 23 - . . scaffold1036 GLEAN mRNA 235773 235814 0.994909 + . ID=CGI_10019957; scaffold1036 WUBlastX LINE_I 235773 235814 20 - . . scaffold1036 GLEAN mRNA 240852 241886 0.994909 + . ID=CGI_10019957; scaffold1036 WUBlastX LINE_L1-Tx1 240852 241886 139 - . . scaffold1036 GLEAN mRNA 242768 243697 0.994909 + . ID=CGI_10019957; scaffold1036 WUBlastX LINE_L1-Tx1 242768 243697 603 - . . scaffold1036 GLEAN mRNA 245130 245201 0.994909 + . ID=CGI_10019957; scaffold1036 WUBlastX LINE_L1 245130 245201 33 - . . scaffold1036 GLEAN mRNA 274829 274929 0.919073 + . ID=CGI_10019959; scaffold1036 TRF Tandem_Repeat 274829 274929 60 + . . scaffold1036 GLEAN mRNA 277413 277532 0.919073 + . ID=CGI_10019959; scaffold1036 WUBlastX DNA_P 277413 277532 30 - . . scaffold1036 GLEAN mRNA 278985 279026 0.919073 + . ID=CGI_10019959; scaffold1036 TRF Tandem_Repeat 278985 279026 84 + . . scaffold1036 GLEAN mRNA 279549 280346 0.919073 + . ID=CGI_10019959; scaffold1036 TRF Tandem_Repeat 279549 280346 926 + . . scaffold1036 GLEAN mRNA 279549 280346 0.919073 + . ID=CGI_10019959; scaffold1036 TRF Tandem_Repeat 279549 280346 924 + . . scaffold1036 GLEAN mRNA 280415 280469 0.919073 + . ID=CGI_10019959; scaffold1036 TRF Tandem_Repeat 280415 280469 110 + . . scaffold1036 GLEAN mRNA 280611 280667 0.919073 + . ID=CGI_10019959; scaffold1036 TRF Tandem_Repeat 280611 280667 57 + . . scaffold1036 GLEAN mRNA 280899 280935 0.919073 + . ID=CGI_10019959; scaffold1036 TRF Tandem_Repeat 280899 280935 74 + . . scaffold1036 GLEAN mRNA 281279 281399 0.919073 + . ID=CGI_10019959; scaffold1036 TRF Tandem_Repeat 281279 281399 158 + . . scaffold1036 GLEAN mRNA 281672 281705 0.919073 + . ID=CGI_10019959; scaffold1036 TRF Tandem_Repeat 281672 281705 54 + . . scaffold1036 GLEAN mRNA 334566 334621 0.999998 + . ID=CGI_10019961; scaffold1036 TRF Tandem_Repeat 334566 334621 112 + . . scaffold1036 GLEAN mRNA 337063 337120 0.999998 + . ID=CGI_10019961; scaffold1036 TRF Tandem_Repeat 337063 337120 64 + . . scaffold1036 GLEAN mRNA 338161 338239 0.999998 + . ID=CGI_10019961; scaffold1036 TRF Tandem_Repeat 338161 338239 140 + . . scaffold1036 GLEAN mRNA 329763 330557 0.999998 + . ID=CGI_10019961; scaffold1036 WUBlastX LTR_Gypsy 329763 330557 202 - . . scaffold1036 GLEAN mRNA 331301 331483 0.999998 + . ID=CGI_10019961; scaffold1036 WUBlastX LTR_Gypsy 331301 331483 65 - . . scaffold1036 GLEAN mRNA 330530 330557 0.617695 - . ID=CGI_10019962; scaffold1036 WUBlastX LTR_Gypsy 329763 330557 202 - . . scaffold1036 GLEAN mRNA 365227 365307 0.651133 + . ID=CGI_10019963; scaffold1036 TRF Tandem_Repeat 365227 365307 83 + . . scaffold1036 GLEAN mRNA 365445 365484 0.651133 + . ID=CGI_10019963; scaffold1036 TRF Tandem_Repeat 365445 365484 80 + . . scaffold1036 GLEAN mRNA 366535 366600 0.651133 + . ID=CGI_10019963; scaffold1036 TRF Tandem_Repeat 366535 366600 132 + . . scaffold1036 GLEAN mRNA 440542 440619 0.998304 + . ID=CGI_10019966; scaffold1036 TRF Tandem_Repeat 440542 440619 147 + . . scaffold1036 GLEAN mRNA 442807 442913 0.998304 + . ID=CGI_10019966; scaffold1036 TRF Tandem_Repeat 442807 442913 91 + . . scaffold1036 GLEAN mRNA 442792 442917 0.998304 + . ID=CGI_10019966; scaffold1036 TRF Tandem_Repeat 442792 442917 252 + . . scaffold1036 GLEAN mRNA 443613 443804 0.998304 + . ID=CGI_10019966; scaffold1036 TRF Tandem_Repeat 443613 443804 348 + . . scaffold1036 GLEAN mRNA 447199 447263 0.998304 + . ID=CGI_10019966; scaffold1036 TRF Tandem_Repeat 447199 447263 96 + . . scaffold1036 GLEAN mRNA 455312 455815 1 - . ID=CGI_10019967; scaffold1036 TRF Tandem_Repeat 455312 455815 226 + . . scaffold1036 GLEAN mRNA 469793 469842 0.994736 + . ID=CGI_10019969; scaffold1036 TRF Tandem_Repeat 469793 469842 91 + . . scaffold1036 GLEAN mRNA 469919 470011 0.994736 + . ID=CGI_10019969; scaffold1036 TRF Tandem_Repeat 469919 470011 99 + . . scaffold1036 GLEAN mRNA 479252 479518 1 - . ID=CGI_10019970; scaffold1036 WUBlastX DNA_MuDR 479252 479518 85 - . . scaffold1036 GLEAN mRNA 479324 479650 1 - . ID=CGI_10019970; scaffold1036 WUBlastX DNA_MuDR 479324 479650 44 - . . scaffold1036 GLEAN mRNA 479312 479560 1 - . ID=CGI_10019970; scaffold1036 WUBlastX DNA_MuDR 479312 479560 51 - . . scaffold1036 GLEAN mRNA 529212 529293 0.25208 + . ID=CGI_10019973; scaffold1036 TRF Tandem_Repeat 529212 529293 139 + . . scaffold1036 GLEAN mRNA 533779 534193 0.25208 + . ID=CGI_10019973; scaffold1036 TRF Tandem_Repeat 533779 534193 647 + . . scaffold1036 GLEAN mRNA 580270 580619 0.769286 + . ID=CGI_10019974; scaffold1036 TRF Tandem_Repeat 580270 580619 555 + . . scaffold1036 GLEAN mRNA 581011 581204 0.769286 + . ID=CGI_10019974; scaffold1036 TRF Tandem_Repeat 581011 581204 335 + . . scaffold1036 GLEAN mRNA 582155 582964 0.769286 + . ID=CGI_10019974; scaffold1036 TRF Tandem_Repeat 582155 582964 1341 + . . scaffold1036 GLEAN mRNA 582815 582957 0.769286 + . ID=CGI_10019974; scaffold1036 TRF Tandem_Repeat 582815 582957 68 + . . scaffold1036 GLEAN mRNA 583431 584069 0.769286 + . ID=CGI_10019974; scaffold1036 TRF Tandem_Repeat 583431 584069 884 + . . scaffold1036 GLEAN mRNA 585820 586701 0.769286 + . ID=CGI_10019974; scaffold1036 TRF Tandem_Repeat 585820 586701 638 + . . scaffold1036 GLEAN mRNA 588033 588087 0.769286 + . ID=CGI_10019974; scaffold1036 TRF Tandem_Repeat 588033 588087 76 + . . scaffold1036 GLEAN mRNA 588260 589292 0.769286 + . ID=CGI_10019974; scaffold1036 TRF Tandem_Repeat 588260 589292 1583 + . . scaffold1036 GLEAN mRNA 590670 590984 0.769286 + . ID=CGI_10019974; scaffold1036 TRF Tandem_Repeat 590670 590984 445 + . . scaffold1036 GLEAN mRNA 596375 596428 0.995654 - . ID=CGI_10019975; scaffold1036 WUBlastX DNA_Maverick 596375 596428 29 + . . scaffold1036 GLEAN mRNA 598621 598761 0.995654 - . ID=CGI_10019975; scaffold1036 WUBlastX DNA_Harbinger 598621 598761 58 + . . scaffold1036 GLEAN mRNA 598645 598767 0.995654 - . ID=CGI_10019975; scaffold1036 WUBlastX DNA_Harbinger 598645 598767 98 + . . scaffold1036 GLEAN mRNA 596872 597057 0.995654 - . ID=CGI_10019975; scaffold1036 WUBlastX DNA_Maverick 596872 597057 55 + . . scaffold1036 GLEAN mRNA 597286 597642 0.995654 - . ID=CGI_10019975; scaffold1036 WUBlastX DNA_Harbinger 597286 597642 131 + . . scaffold1036 GLEAN mRNA 596417 596524 0.995654 - . ID=CGI_10019975; scaffold1036 WUBlastX DNA_Maverick 596417 596524 43 + . . scaffold1036 GLEAN mRNA 596556 596873 0.995654 - . ID=CGI_10019975; scaffold1036 WUBlastX DNA_Maverick 596556 596873 163 + . . scaffold1036 GLEAN mRNA 596872 596991 0.995654 - . ID=CGI_10019975; scaffold1036 WUBlastX DNA_Maverick 596872 596991 68 + . . scaffold1036 GLEAN mRNA 598964 599152 0.995654 - . ID=CGI_10019975; scaffold1036 WUBlastX LTR_Gypsy 598964 599152 73 + . . scaffold1036 GLEAN mRNA 596484 596867 0.995654 - . ID=CGI_10019975; scaffold1036 WUBlastX DNA_Maverick 596484 596867 152 + . . scaffold626 GLEAN mRNA 12912 12969 0.991401 - . ID=CGI_10019976; scaffold626 TRF Tandem_Repeat 12912 12969 116 + . . scaffold626 GLEAN mRNA 38527 38808 0.361303 - . ID=CGI_10019977; scaffold626 WUBlastX RC_Helitron 38527 38808 77 - . . scaffold626 GLEAN mRNA 58533 58570 0.361303 - . ID=CGI_10019977; scaffold626 TRF Tandem_Repeat 58533 58570 58 + . . scaffold626 GLEAN mRNA 54144 54431 0.361303 - . ID=CGI_10019977; scaffold626 WUBlastX RC_Helitron 54144 54431 119 - . . scaffold626 GLEAN mRNA 67155 67437 0.819021 + . ID=CGI_10019978; scaffold626 TRF Tandem_Repeat 67155 67437 548 + . . scaffold626 GLEAN mRNA 74894 75061 0.819021 + . ID=CGI_10019978; scaffold626 TRF Tandem_Repeat 74894 75061 191 + . . scaffold626 GLEAN mRNA 75254 75298 0.819021 + . ID=CGI_10019978; scaffold626 TRF Tandem_Repeat 75254 75298 90 + . . scaffold626 GLEAN mRNA 139703 139728 0.745946 - . ID=CGI_10019981; scaffold626 TRF Tandem_Repeat 139703 139728 52 + . . scaffold626 GLEAN mRNA 143320 143373 0.745946 - . ID=CGI_10019981; scaffold626 TRF Tandem_Repeat 143320 143373 99 + . . scaffold626 GLEAN mRNA 141405 141551 0.745946 - . ID=CGI_10019981; scaffold626 WUBlastX DNA_Harbinger 141405 141551 57 - . . scaffold626 GLEAN mRNA 141022 141138 0.745946 - . ID=CGI_10019981; scaffold626 WUBlastX DNA_Harbinger 141022 141138 40 - . . scaffold626 GLEAN mRNA 140640 140762 0.745946 - . ID=CGI_10019981; scaffold626 WUBlastX DNA_Harbinger 140640 140762 60 - . . scaffold626 GLEAN mRNA 141432 141572 0.745946 - . ID=CGI_10019981; scaffold626 WUBlastX DNA_Harbinger 141432 141572 92 - . . scaffold626 GLEAN mRNA 142594 142935 0.745946 - . ID=CGI_10019981; scaffold626 WUBlastX DNA_Harbinger 142594 142935 109 - . . scaffold626 GLEAN mRNA 151708 151760 0.745946 - . ID=CGI_10019981; scaffold626 TRF Tandem_Repeat 151708 151760 72 + . . scaffold626 GLEAN mRNA 151706 151771 0.745946 - . ID=CGI_10019981; scaffold626 TRF Tandem_Repeat 151706 151771 88 + . . scaffold626 GLEAN mRNA 151710 151771 0.745946 - . ID=CGI_10019981; scaffold626 TRF Tandem_Repeat 151710 151771 90 + . . scaffold626 GLEAN mRNA 172034 172082 0.765794 - . ID=CGI_10019984; scaffold626 TRF Tandem_Repeat 172034 172082 53 + . . scaffold626 GLEAN mRNA 173535 173569 0.765794 - . ID=CGI_10019984; scaffold626 TRF Tandem_Repeat 173535 173569 61 + . . scaffold626 GLEAN mRNA 180948 180974 1 + . ID=CGI_10019985; scaffold626 TRF Tandem_Repeat 180948 180974 54 + . . scaffold626 GLEAN mRNA 190065 190106 0.996819 + . ID=CGI_10019986; scaffold626 TRF Tandem_Repeat 190065 190106 54 + . . scaffold626 GLEAN mRNA 190176 190427 0.996819 + . ID=CGI_10019986; scaffold626 WUBlastX DNA_hAT 190176 190427 37 + . . scaffold626 GLEAN mRNA 189711 189911 0.996819 + . ID=CGI_10019986; scaffold626 WUBlastX DNA_hAT 189711 189911 59 + . . scaffold626 GLEAN mRNA 189297 189407 0.996819 + . ID=CGI_10019986; scaffold626 WUBlastX DNA_hAT 189297 189407 65 + . . scaffold626 GLEAN mRNA 187436 188167 0.996819 + . ID=CGI_10019986; scaffold626 WUBlastX DNA_hAT 187436 188167 167 + . . scaffold626 GLEAN mRNA 189267 189407 0.996819 + . ID=CGI_10019986; scaffold626 WUBlastX DNA_hAT 189267 189407 55 + . . scaffold626 GLEAN mRNA 197255 197304 0.999999 - . ID=CGI_10019988; scaffold626 TRF Tandem_Repeat 197255 197304 100 + . . scaffold626 GLEAN mRNA 204595 204644 0.996819 + . ID=CGI_10019989; scaffold626 TRF Tandem_Repeat 204595 204644 91 + . . scaffold626 GLEAN mRNA 205337 205384 0.996819 + . ID=CGI_10019989; scaffold626 TRF Tandem_Repeat 205337 205384 96 + . . scaffold626 GLEAN mRNA 220068 220121 0.999676 - . ID=CGI_10019991; scaffold626 TRF Tandem_Repeat 220068 220121 108 + . . scaffold626 GLEAN mRNA 395348 395402 0.622161 - . ID=CGI_10019994; scaffold626 TRF Tandem_Repeat 395348 395402 110 + . . scaffold626 GLEAN mRNA 395402 395433 0.622161 - . ID=CGI_10019994; scaffold626 TRF Tandem_Repeat 395402 395433 55 + . . scaffold626 GLEAN mRNA 407137 408433 0.622161 - . ID=CGI_10019994; scaffold626 TRF Tandem_Repeat 407137 408433 1414 + . . scaffold626 GLEAN mRNA 407499 408294 0.622161 - . ID=CGI_10019994; scaffold626 TRF Tandem_Repeat 407499 408294 514 + . . scaffold626 GLEAN mRNA 407648 408433 0.622161 - . ID=CGI_10019994; scaffold626 TRF Tandem_Repeat 407648 408433 870 + . . scaffold626 GLEAN mRNA 433091 433305 0.673125 - . ID=CGI_10019996; scaffold626 TRF Tandem_Repeat 433091 433305 277 + . . scaffold626 GLEAN mRNA 442812 442837 1 - . ID=CGI_10019997; scaffold626 TRF Tandem_Repeat 442812 442837 52 + . . scaffold626 GLEAN mRNA 485311 485405 0.98805 - . ID=CGI_10020000; scaffold626 TRF Tandem_Repeat 485311 485405 156 + . . scaffold626 GLEAN mRNA 482857 483258 0.98805 - . ID=CGI_10020000; scaffold626 WUBlastX LINE_Penelope 482857 483258 42 - . . scaffold626 GLEAN mRNA 482965 483192 0.98805 - . ID=CGI_10020000; scaffold626 WUBlastX LINE_Penelope 482965 483192 73 - . . scaffold626 GLEAN mRNA 508113 508167 0.539822 + . ID=CGI_10020002; scaffold626 TRF Tandem_Repeat 508113 508167 110 + . . scaffold626 GLEAN mRNA 569125 569214 0.433984 + . ID=CGI_10020005; scaffold626 WUBlastX LINE_L2 569125 569214 43 - . . scaffold948 GLEAN mRNA 181792 181801 0.837819 - . ID=CGI_10020012; scaffold948 TRF Tandem_Repeat 180424 181801 2551 + . . scaffold948 GLEAN mRNA 182569 183028 0.837819 - . ID=CGI_10020012; scaffold948 TRF Tandem_Repeat 182569 183028 694 + . . scaffold948 GLEAN mRNA 208623 208659 0.887826 - . ID=CGI_10020014; scaffold948 TRF Tandem_Repeat 208623 208659 74 + . . scaffold948 GLEAN mRNA 234410 234559 0.0278138 + . ID=CGI_10020015; scaffold948 TRF Tandem_Repeat 234410 234559 264 + . . scaffold948 GLEAN mRNA 238047 238130 0.0278138 + . ID=CGI_10020015; scaffold948 TRF Tandem_Repeat 238047 238130 150 + . . scaffold948 GLEAN mRNA 256187 256608 0.0278138 + . ID=CGI_10020015; scaffold948 TRF Tandem_Repeat 256187 256608 799 + . . scaffold948 GLEAN mRNA 260872 261022 0.0278138 + . ID=CGI_10020015; scaffold948 TRF Tandem_Repeat 260872 261022 92 + . . scaffold948 GLEAN mRNA 260924 261069 0.0278138 + . ID=CGI_10020015; scaffold948 TRF Tandem_Repeat 260924 261069 116 + . . scaffold948 GLEAN mRNA 260867 261094 0.0278138 + . ID=CGI_10020015; scaffold948 TRF Tandem_Repeat 260867 261094 370 + . . scaffold948 GLEAN mRNA 268060 268111 0.0278138 + . ID=CGI_10020015; scaffold948 TRF Tandem_Repeat 268060 268111 61 + . . scaffold948 GLEAN mRNA 273259 273307 0.0278138 + . ID=CGI_10020015; scaffold948 TRF Tandem_Repeat 273259 273307 89 + . . scaffold948 GLEAN mRNA 275738 275774 0.0278138 + . ID=CGI_10020015; scaffold948 TRF Tandem_Repeat 275738 275774 56 + . . scaffold948 GLEAN mRNA 278837 278866 0.0278138 + . ID=CGI_10020015; scaffold948 TRF Tandem_Repeat 278837 278866 60 + . . scaffold948 GLEAN mRNA 285015 285042 0.0278138 + . ID=CGI_10020015; scaffold948 TRF Tandem_Repeat 285015 285042 56 + . . scaffold948 GLEAN mRNA 321547 321587 0.614411 - . ID=CGI_10020017; scaffold948 TRF Tandem_Repeat 321547 321587 82 + . . scaffold948 GLEAN mRNA 371829 371859 0.724047 - . ID=CGI_10020019; scaffold948 TRF Tandem_Repeat 371829 371859 62 + . . scaffold948 GLEAN mRNA 380563 380614 0.724047 - . ID=CGI_10020019; scaffold948 TRF Tandem_Repeat 380563 380614 95 + . . scaffold948 GLEAN mRNA 380711 380770 0.724047 - . ID=CGI_10020019; scaffold948 TRF Tandem_Repeat 380711 380770 97 + . . scaffold948 GLEAN mRNA 406583 406634 0.819427 - . ID=CGI_10020020; scaffold948 TRF Tandem_Repeat 406583 406634 77 + . . scaffold948 GLEAN mRNA 415859 415920 0.813847 - . ID=CGI_10020024; scaffold948 TRF Tandem_Repeat 415859 415920 124 + . . scaffold948 GLEAN mRNA 417891 418457 0.813847 - . ID=CGI_10020024; scaffold948 WUBlastX LTR_Pao 417891 418457 25 - . . scaffold948 GLEAN mRNA 428154 428180 0.353788 - . ID=CGI_10020025; scaffold948 TRF Tandem_Repeat 428154 428180 54 + . . scaffold948 GLEAN mRNA 428180 428242 0.353788 - . ID=CGI_10020025; scaffold948 TRF Tandem_Repeat 428180 428242 126 + . . scaffold948 GLEAN mRNA 483478 483559 1 - . ID=CGI_10020032; scaffold948 TRF Tandem_Repeat 483478 483559 85 + . . scaffold948 GLEAN mRNA 484028 484163 1 - . ID=CGI_10020032; scaffold948 TRF Tandem_Repeat 484028 484163 156 + . . scaffold948 GLEAN mRNA 484028 484163 1 - . ID=CGI_10020032; scaffold948 TRF Tandem_Repeat 484028 484163 184 + . . scaffold948 GLEAN mRNA 616419 616566 1 + . ID=CGI_10020034; scaffold948 TRF Tandem_Repeat 616419 616566 156 + . . scaffold258 GLEAN mRNA 15603 15646 0.989512 + . ID=CGI_10020036; scaffold258 TRF Tandem_Repeat 15603 15646 79 + . . scaffold258 GLEAN mRNA 41217 41265 0.99795 - . ID=CGI_10020038; scaffold258 TRF Tandem_Repeat 41217 41265 89 + . . scaffold258 GLEAN mRNA 41536 41592 0.99795 - . ID=CGI_10020038; scaffold258 TRF Tandem_Repeat 41536 41592 105 + . . scaffold258 GLEAN mRNA 98007 98055 0.706765 + . ID=CGI_10020040; scaffold258 TRF Tandem_Repeat 98007 98055 98 + . . scaffold258 GLEAN mRNA 98643 98845 0.706765 + . ID=CGI_10020040; scaffold258 TRF Tandem_Repeat 98643 98845 256 + . . scaffold258 GLEAN mRNA 119654 119685 0.999063 + . ID=CGI_10020042; scaffold258 TRF Tandem_Repeat 119654 119685 64 + . . scaffold258 GLEAN mRNA 119685 119721 0.999063 + . ID=CGI_10020042; scaffold258 TRF Tandem_Repeat 119685 119721 65 + . . scaffold258 GLEAN mRNA 127050 127079 0.999063 + . ID=CGI_10020042; scaffold258 TRF Tandem_Repeat 127050 127079 60 + . . scaffold258 GLEAN mRNA 146246 146288 0.999999 - . ID=CGI_10020044; scaffold258 TRF Tandem_Repeat 146246 146288 86 + . . scaffold258 GLEAN mRNA 147702 148169 0.999999 - . ID=CGI_10020044; scaffold258 WUBlastX LTR_Gypsy 147702 148169 20 - . . scaffold258 GLEAN mRNA 154867 154968 0.998597 - . ID=CGI_10020045; scaffold258 WUBlastX LTR_Gypsy 154867 154968 35 - . . scaffold258 GLEAN mRNA 184562 184629 1 + . ID=CGI_10020048; scaffold258 TRF Tandem_Repeat 184562 184629 136 + . . scaffold258 GLEAN mRNA 200542 200722 0.999675 + . ID=CGI_10020049; scaffold258 TRF Tandem_Repeat 200542 200722 265 + . . scaffold258 GLEAN mRNA 208742 208799 0.659899 - . ID=CGI_10020050; scaffold258 TRF Tandem_Repeat 208742 208799 107 + . . scaffold258 GLEAN mRNA 225745 225784 0.659899 - . ID=CGI_10020050; scaffold258 TRF Tandem_Repeat 225745 225784 80 + . . scaffold258 GLEAN mRNA 230551 230608 0.659899 - . ID=CGI_10020050; scaffold258 TRF Tandem_Repeat 230551 230608 116 + . . scaffold258 GLEAN mRNA 233960 233998 0.659899 - . ID=CGI_10020050; scaffold258 TRF Tandem_Repeat 233960 233998 78 + . . scaffold258 GLEAN mRNA 248367 248431 0.927019 - . ID=CGI_10020051; scaffold258 TRF Tandem_Repeat 248367 248431 130 + . . scaffold258 GLEAN mRNA 249854 249901 0.927019 - . ID=CGI_10020051; scaffold258 TRF Tandem_Repeat 249854 249901 96 + . . scaffold258 GLEAN mRNA 250081 250128 0.927019 - . ID=CGI_10020051; scaffold258 TRF Tandem_Repeat 250081 250128 80 + . . scaffold258 GLEAN mRNA 254066 254962 1 + . ID=CGI_10020052; scaffold258 TRF Tandem_Repeat 254066 254962 1355 + . . scaffold258 GLEAN mRNA 257980 258112 1 + . ID=CGI_10020052; scaffold258 TRF Tandem_Repeat 257980 258112 160 + . . scaffold258 GLEAN mRNA 258169 258282 1 + . ID=CGI_10020052; scaffold258 TRF Tandem_Repeat 258169 258282 138 + . . scaffold258 GLEAN mRNA 264798 264937 1 + . ID=CGI_10020052; scaffold258 TRF Tandem_Repeat 264798 264937 235 + . . scaffold258 GLEAN mRNA 318282 318827 1 + . ID=CGI_10020057; scaffold258 WUBlastX LINE_CR1-L2 318282 318827 75 + . . scaffold258 GLEAN mRNA 318282 318710 1 + . ID=CGI_10020057; scaffold258 WUBlastX LINE_CR1 318282 318710 263 + . . scaffold258 GLEAN mRNA 330446 330736 1 + . ID=CGI_10020058; scaffold258 TRF Tandem_Repeat 330446 330736 203 + . . scaffold258 GLEAN mRNA 330446 330721 1 + . ID=CGI_10020058; scaffold258 TRF Tandem_Repeat 330446 330721 252 + . . scaffold258 GLEAN mRNA 331300 331392 1 + . ID=CGI_10020058; scaffold258 TRF Tandem_Repeat 331300 331392 89 + . . scaffold258 GLEAN mRNA 404843 404990 0.997991 - . ID=CGI_10020063; scaffold258 TRF Tandem_Repeat 404843 404990 122 + . . scaffold258 GLEAN mRNA 447894 447927 0.82702 + . ID=CGI_10020066; scaffold258 TRF Tandem_Repeat 447894 447927 68 + . . scaffold258 GLEAN mRNA 450485 450522 1 + . ID=CGI_10020067; scaffold258 TRF Tandem_Repeat 450485 450522 51 + . . scaffold258 GLEAN mRNA 453286 453351 1 + . ID=CGI_10020067; scaffold258 TRF Tandem_Repeat 453286 453351 132 + . . scaffold258 GLEAN mRNA 456300 457027 1 + . ID=CGI_10020067; scaffold258 TRF Tandem_Repeat 456300 457027 913 + . . scaffold258 GLEAN mRNA 456523 457027 1 + . ID=CGI_10020067; scaffold258 TRF Tandem_Repeat 456523 457027 617 + . . scaffold258 GLEAN mRNA 457743 457794 1 + . ID=CGI_10020067; scaffold258 TRF Tandem_Repeat 457743 457794 104 + . . scaffold258 GLEAN mRNA 487471 487509 0.999656 + . ID=CGI_10020069; scaffold258 TRF Tandem_Repeat 487471 487509 78 + . . scaffold258 GLEAN mRNA 508463 508522 1 + . ID=CGI_10020071; scaffold258 TRF Tandem_Repeat 508463 508522 120 + . . scaffold258 GLEAN mRNA 508544 508599 1 + . ID=CGI_10020071; scaffold258 TRF Tandem_Repeat 508544 508599 89 + . . scaffold258 GLEAN mRNA 508722 508772 1 + . ID=CGI_10020071; scaffold258 TRF Tandem_Repeat 508722 508772 57 + . . scaffold258 GLEAN mRNA 510669 510715 1 + . ID=CGI_10020071; scaffold258 TRF Tandem_Repeat 510669 510715 60 + . . scaffold258 GLEAN mRNA 510670 510754 1 + . ID=CGI_10020071; scaffold258 TRF Tandem_Repeat 510670 510754 52 + . . scaffold258 GLEAN mRNA 510668 510755 1 + . ID=CGI_10020071; scaffold258 TRF Tandem_Repeat 510668 510755 74 + . . scaffold258 GLEAN mRNA 513737 514704 1 + . ID=CGI_10020071; scaffold258 TRF Tandem_Repeat 513737 514704 1073 + . . scaffold258 GLEAN mRNA 514998 515088 1 + . ID=CGI_10020071; scaffold258 TRF Tandem_Repeat 514998 515088 119 + . . scaffold258 GLEAN mRNA 540348 540421 0.862836 + . ID=CGI_10020074; scaffold258 TRF Tandem_Repeat 540348 540421 130 + . . scaffold258 GLEAN mRNA 547172 547224 0.862836 + . ID=CGI_10020074; scaffold258 TRF Tandem_Repeat 547172 547224 106 + . . scaffold258 GLEAN mRNA 554496 554770 0.862836 + . ID=CGI_10020074; scaffold258 TRF Tandem_Repeat 554496 554770 433 + . . scaffold258 GLEAN mRNA 555516 555602 0.862836 + . ID=CGI_10020074; scaffold258 TRF Tandem_Repeat 555516 555602 167 + . . scaffold258 GLEAN mRNA 560635 560669 0.862836 + . ID=CGI_10020074; scaffold258 TRF Tandem_Repeat 560635 560669 61 + . . scaffold258 GLEAN mRNA 563287 563314 0.862836 + . ID=CGI_10020074; scaffold258 TRF Tandem_Repeat 563287 563314 56 + . . scaffold258 GLEAN mRNA 563321 564055 0.862836 + . ID=CGI_10020074; scaffold258 TRF Tandem_Repeat 563321 564055 1180 + . . scaffold709 GLEAN mRNA 9112 9174 0.999949 + . ID=CGI_10020075; scaffold709 TRF Tandem_Repeat 9112 9174 65 + . . scaffold709 GLEAN mRNA 13136 13233 1 + . ID=CGI_10020076; scaffold709 TRF Tandem_Repeat 13136 13233 90 + . . scaffold709 GLEAN mRNA 18719 18806 0.999886 + . ID=CGI_10020077; scaffold709 TRF Tandem_Repeat 18719 18806 59 + . . scaffold709 GLEAN mRNA 20278 20334 0.999886 + . ID=CGI_10020077; scaffold709 TRF Tandem_Repeat 20278 20334 114 + . . scaffold709 GLEAN mRNA 47107 47145 0.650318 + . ID=CGI_10020079; scaffold709 TRF Tandem_Repeat 47107 47145 78 + . . scaffold709 GLEAN mRNA 180899 180948 0.999674 + . ID=CGI_10020084; scaffold709 TRF Tandem_Repeat 180899 180948 59 + . . scaffold709 GLEAN mRNA 221819 221843 0.788393 - . ID=CGI_10020088; scaffold709 TRF Tandem_Repeat 221819 221843 50 + . . scaffold709 GLEAN mRNA 222435 222476 0.788393 - . ID=CGI_10020088; scaffold709 TRF Tandem_Repeat 222435 222476 52 + . . scaffold709 GLEAN mRNA 315030 315245 0.999026 + . ID=CGI_10020089; scaffold709 WUBlastX LINE_RTE-X 315030 315245 35 + . . scaffold709 GLEAN mRNA 314550 315197 0.999026 + . ID=CGI_10020089; scaffold709 WUBlastX LINE_RTE-X 314550 315197 69 + . . scaffold709 GLEAN mRNA 315519 315611 0.999026 + . ID=CGI_10020089; scaffold709 WUBlastX LINE_RTE-X 315519 315611 24 + . . scaffold709 GLEAN mRNA 315586 315678 0.999026 + . ID=CGI_10020089; scaffold709 WUBlastX LINE_RTE-X 315586 315678 25 + . . scaffold709 GLEAN mRNA 407509 407624 0.999999 - . ID=CGI_10020090; scaffold709 TRF Tandem_Repeat 407509 407624 86 + . . scaffold709 GLEAN mRNA 407514 407625 0.999999 - . ID=CGI_10020090; scaffold709 TRF Tandem_Repeat 407514 407625 104 + . . scaffold709 GLEAN mRNA 407509 407632 0.999999 - . ID=CGI_10020090; scaffold709 TRF Tandem_Repeat 407509 407632 84 + . . scaffold709 GLEAN mRNA 407546 407618 0.999999 - . ID=CGI_10020090; scaffold709 TRF Tandem_Repeat 407546 407618 75 + . . scaffold709 GLEAN mRNA 407515 407623 0.999999 - . ID=CGI_10020090; scaffold709 TRF Tandem_Repeat 407515 407623 66 + . . scaffold709 GLEAN mRNA 412063 412790 0.574856 + . ID=CGI_10020092; scaffold709 TRF Tandem_Repeat 412063 412790 956 + . . scaffold709 GLEAN mRNA 412063 412790 0.999868 - . ID=CGI_10020093; scaffold709 TRF Tandem_Repeat 412063 412790 956 + . . scaffold709 GLEAN mRNA 435683 436016 0.296535 - . ID=CGI_10020094; scaffold709 TRF Tandem_Repeat 435683 436016 230 + . . scaffold461 GLEAN mRNA 42075 42131 0.531716 - . ID=CGI_10020100; scaffold461 TRF Tandem_Repeat 42075 42131 51 + . . scaffold461 GLEAN mRNA 42233 42277 0.531716 - . ID=CGI_10020100; scaffold461 TRF Tandem_Repeat 42233 42277 63 + . . scaffold461 GLEAN mRNA 183122 183242 0.394118 + . ID=CGI_10020106; scaffold461 TRF Tandem_Repeat 183122 183242 110 + . . scaffold461 GLEAN mRNA 184274 184407 0.394118 + . ID=CGI_10020106; scaffold461 TRF Tandem_Repeat 184274 184407 128 + . . scaffold461 GLEAN mRNA 189189 189240 0.394118 + . ID=CGI_10020106; scaffold461 TRF Tandem_Repeat 189189 189240 104 + . . scaffold461 GLEAN mRNA 266219 267142 0.999942 - . ID=CGI_10020107; scaffold461 WUBlastX DNA_TcMar-Tc1 266219 267142 387 - . . scaffold461 GLEAN mRNA 293085 293603 0.67711 - . ID=CGI_10020108; scaffold461 WUBlastX LINE_L2 293085 293603 65 - . . scaffold461 GLEAN mRNA 293771 293842 0.67711 - . ID=CGI_10020108; scaffold461 WUBlastX LINE_L2 293771 293842 20 - . . scaffold461 GLEAN mRNA 292980 293318 0.67711 - . ID=CGI_10020108; scaffold461 WUBlastX LINE_L2 292980 293318 119 - . . scaffold461 GLEAN mRNA 292954 293055 0.67711 - . ID=CGI_10020108; scaffold461 WUBlastX LINE_L2 292954 293055 27 - . . scaffold461 GLEAN mRNA 293064 293426 0.67711 - . ID=CGI_10020108; scaffold461 WUBlastX LINE_L2 293064 293426 109 - . . scaffold461 GLEAN mRNA 293061 293318 0.67711 - . ID=CGI_10020108; scaffold461 WUBlastX LINE_L2 293061 293318 156 - . . scaffold461 GLEAN mRNA 288339 289103 0.67711 - . ID=CGI_10020108; scaffold461 WUBlastX DNA_IS4EU 288339 289103 101 - . . scaffold461 GLEAN mRNA 307242 307281 1 - . ID=CGI_10020109; scaffold461 TRF Tandem_Repeat 307242 307281 73 + . . scaffold461 GLEAN mRNA 308229 308372 1 - . ID=CGI_10020109; scaffold461 WUBlastX DNA_Harbinger 308229 308372 72 - . . scaffold461 GLEAN mRNA 309046 309222 1 - . ID=CGI_10020109; scaffold461 WUBlastX DNA_Harbinger 309046 309222 27 - . . scaffold461 GLEAN mRNA 308211 308345 1 - . ID=CGI_10020109; scaffold461 WUBlastX DNA_Harbinger 308211 308345 72 - . . scaffold461 GLEAN mRNA 309022 309186 1 - . ID=CGI_10020109; scaffold461 WUBlastX DNA_Harbinger 309022 309186 57 - . . scaffold461 GLEAN mRNA 324296 325357 0.651135 - . ID=CGI_10020110; scaffold461 WUBlastX LINE_Penelope 324296 325357 195 + . . scaffold461 GLEAN mRNA 495514 495538 0.533668 + . ID=CGI_10020115; scaffold461 TRF Tandem_Repeat 495514 495538 50 + . . scaffold461 GLEAN mRNA 501700 501897 0.618241 - . ID=CGI_10020116; scaffold461 WUBlastX LTR_Gypsy 501700 501897 24 - . . scaffold461 GLEAN mRNA 503394 503672 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX DNA_IS4EU 503394 503672 28 + . . scaffold461 GLEAN mRNA 503741 503860 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX DNA_IS4EU 503741 503860 44 + . . scaffold461 GLEAN mRNA 506029 506211 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX LINE_RTE-X 506029 506211 58 + . . scaffold461 GLEAN mRNA 505588 505731 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX LINE_RTE-X 505588 505731 58 + . . scaffold461 GLEAN mRNA 506053 506301 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX LINE_RTE-X 506053 506301 28 + . . scaffold461 GLEAN mRNA 505612 505803 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX LINE_RTE-X 505612 505803 63 + . . scaffold461 GLEAN mRNA 508443 508961 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX LTR_Gypsy-Cigr 508443 508961 158 + . . scaffold461 GLEAN mRNA 507230 508087 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX LTR_Gypsy 507230 508087 43 + . . scaffold461 GLEAN mRNA 507452 508414 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX LTR_Gypsy 507452 508414 171 + . . scaffold461 GLEAN mRNA 507530 508102 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX LTR_Gypsy-Cigr 507530 508102 199 + . . scaffold461 GLEAN mRNA 512997 513047 0.712865 + . ID=CGI_10020118; scaffold461 TRF Tandem_Repeat 512997 513047 93 + . . scaffold461 GLEAN mRNA 513451 513609 0.712865 + . ID=CGI_10020118; scaffold461 TRF Tandem_Repeat 513451 513609 300 + . . scaffold461 GLEAN mRNA 513727 513807 0.712865 + . ID=CGI_10020118; scaffold461 TRF Tandem_Repeat 513727 513807 135 + . . scaffold461 GLEAN mRNA 515285 515593 0.712865 + . ID=CGI_10020118; scaffold461 WUBlastX LTR_Pao 515285 515593 135 + . . scaffold461 GLEAN mRNA 515704 516180 0.712865 + . ID=CGI_10020118; scaffold461 WUBlastX LTR_Ngaro 515704 516180 104 + . . scaffold461 GLEAN mRNA 515153 515593 0.712865 + . ID=CGI_10020118; scaffold461 WUBlastX LTR_Pao 515153 515593 116 + . . scaffold461 GLEAN mRNA 515204 515695 0.712865 + . ID=CGI_10020118; scaffold461 WUBlastX LTR_Pao 515204 515695 112 + . . scaffold461 GLEAN mRNA 564604 564659 0.983518 + . ID=CGI_10020120; scaffold461 TRF Tandem_Repeat 564604 564659 58 + . . scaffold461 GLEAN mRNA 564602 564654 0.983518 + . ID=CGI_10020120; scaffold461 TRF Tandem_Repeat 564602 564654 52 + . . scaffold461 GLEAN mRNA 571427 571484 0.983518 + . ID=CGI_10020120; scaffold461 TRF Tandem_Repeat 571427 571484 109 + . . scaffold461 GLEAN mRNA 576190 576246 0.983518 + . ID=CGI_10020120; scaffold461 TRF Tandem_Repeat 576190 576246 53 + . . scaffold461 GLEAN mRNA 576198 576263 0.983518 + . ID=CGI_10020120; scaffold461 TRF Tandem_Repeat 576198 576263 71 + . . scaffold461 GLEAN mRNA 578586 578649 0.983518 + . ID=CGI_10020120; scaffold461 TRF Tandem_Repeat 578586 578649 128 + . . scaffold140 GLEAN mRNA 72457 72513 0.362757 - . ID=CGI_10020123; scaffold140 TRF Tandem_Repeat 72457 72513 114 + . . scaffold140 GLEAN mRNA 73034 74011 0.362757 - . ID=CGI_10020123; scaffold140 WUBlastX LINE_L1-Tx1 73034 74011 258 + . . scaffold140 GLEAN mRNA 74133 74609 0.362757 - . ID=CGI_10020123; scaffold140 WUBlastX LINE_L1-Tx1 74133 74609 73 + . . scaffold140 GLEAN mRNA 73921 74118 0.362757 - . ID=CGI_10020123; scaffold140 WUBlastX LINE_L1-Tx1 73921 74118 77 + . . scaffold140 GLEAN mRNA 72890 74050 0.362757 - . ID=CGI_10020123; scaffold140 WUBlastX LINE_L1-Tx1 72890 74050 138 + . . scaffold140 GLEAN mRNA 160308 160339 0.399475 - . ID=CGI_10020124; scaffold140 TRF Tandem_Repeat 160308 160339 55 + . . scaffold140 GLEAN mRNA 160451 161198 0.399475 - . ID=CGI_10020124; scaffold140 TRF Tandem_Repeat 160451 161198 979 + . . scaffold140 GLEAN mRNA 169942 170090 0.399475 - . ID=CGI_10020124; scaffold140 TRF Tandem_Repeat 169942 170090 120 + . . scaffold140 GLEAN mRNA 170196 170328 0.399475 - . ID=CGI_10020124; scaffold140 TRF Tandem_Repeat 170196 170328 151 + . . scaffold140 GLEAN mRNA 268532 268579 0.999661 + . ID=CGI_10020132; scaffold140 TRF Tandem_Repeat 268532 268579 60 + . . scaffold140 GLEAN mRNA 268533 268583 0.999661 + . ID=CGI_10020132; scaffold140 TRF Tandem_Repeat 268533 268583 61 + . . scaffold140 GLEAN mRNA 268549 268598 0.999661 + . ID=CGI_10020132; scaffold140 TRF Tandem_Repeat 268549 268598 54 + . . scaffold140 GLEAN mRNA 293694 293836 0.732841 - . ID=CGI_10020133; scaffold140 TRF Tandem_Repeat 293694 293836 140 + . . scaffold140 GLEAN mRNA 315413 315553 0.976053 - . ID=CGI_10020134; scaffold140 WUBlastX RC_Helitron 315413 315553 24 - . . scaffold140 GLEAN mRNA 345440 345625 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_CR1 345440 345625 61 - . . scaffold140 GLEAN mRNA 344946 345086 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_CR1-L2 344946 345086 56 - . . scaffold140 GLEAN mRNA 345473 345631 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_CR1-L2 345473 345631 100 - . . scaffold140 GLEAN mRNA 345473 345808 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_L2 345473 345808 72 - . . scaffold140 GLEAN mRNA 346034 346096 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_L2 346034 346096 21 - . . scaffold140 GLEAN mRNA 345064 345348 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_CR1-L2 345064 345348 74 - . . scaffold140 GLEAN mRNA 345380 345592 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_L2 345380 345592 54 - . . scaffold140 GLEAN mRNA 343886 344263 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_L2 343886 344263 122 - . . scaffold140 GLEAN mRNA 345440 345625 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_CR1 345440 345625 61 - . . scaffold140 GLEAN mRNA 344946 345086 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_CR1-L2 344946 345086 56 - . . scaffold140 GLEAN mRNA 345473 345631 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_CR1-L2 345473 345631 100 - . . scaffold140 GLEAN mRNA 345473 345808 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_L2 345473 345808 72 - . . scaffold140 GLEAN mRNA 346034 346096 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_L2 346034 346096 21 - . . scaffold140 GLEAN mRNA 345064 345348 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_CR1-L2 345064 345348 74 - . . scaffold140 GLEAN mRNA 345380 345592 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_L2 345380 345592 54 - . . scaffold140 GLEAN mRNA 363727 363780 0.671174 - . ID=CGI_10020136; scaffold140 TRF Tandem_Repeat 363727 363780 108 + . . scaffold140 GLEAN mRNA 365526 366317 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_L1-Tx1 365526 366317 385 - . . scaffold140 GLEAN mRNA 365261 365413 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_L1-Tx1 365261 365413 20 - . . scaffold140 GLEAN mRNA 365340 366320 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_L1-Tx1 365340 366320 151 - . . scaffold140 GLEAN mRNA 365892 366533 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_CR1 365892 366533 53 - . . scaffold140 GLEAN mRNA 364872 365246 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_L1-Tx1 364872 365246 96 - . . scaffold140 GLEAN mRNA 365294 365515 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_L1-Tx1 365294 365515 45 - . . scaffold140 GLEAN mRNA 366854 366943 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_L2 366854 366943 26 - . . scaffold140 GLEAN mRNA 365916 366404 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_L1 365916 366404 87 - . . scaffold140 GLEAN mRNA 559864 559925 0.999281 + . ID=CGI_10020146; scaffold140 TRF Tandem_Repeat 559864 559925 106 + . . scaffold140 GLEAN mRNA 562767 563381 0.999281 + . ID=CGI_10020146; scaffold140 TRF Tandem_Repeat 562767 563381 775 + . . scaffold140 GLEAN mRNA 602488 603288 1 + . ID=CGI_10020147; scaffold140 TRF Tandem_Repeat 602488 603288 1280 + . . scaffold140 GLEAN mRNA 609766 610038 1 - . ID=CGI_10020148; scaffold140 TRF Tandem_Repeat 609766 610038 483 + . . scaffold140 GLEAN mRNA 614634 614660 0.462581 - . ID=CGI_10020149; scaffold140 TRF Tandem_Repeat 614634 614660 54 + . . scaffold140 GLEAN mRNA 617913 617974 0.462581 - . ID=CGI_10020149; scaffold140 TRF Tandem_Repeat 617913 617974 124 + . . scaffold140 GLEAN mRNA 621836 621905 0.462581 - . ID=CGI_10020149; scaffold140 TRF Tandem_Repeat 621836 621905 124 + . . scaffold140 GLEAN mRNA 622421 622463 0.462581 - . ID=CGI_10020149; scaffold140 TRF Tandem_Repeat 622421 622463 86 + . . scaffold140 GLEAN mRNA 624357 624382 0.462581 - . ID=CGI_10020149; scaffold140 TRF Tandem_Repeat 624357 624382 52 + . . scaffold140 GLEAN mRNA 624809 624967 0.462581 - . ID=CGI_10020149; scaffold140 TRF Tandem_Repeat 624809 624967 189 + . . scaffold140 GLEAN mRNA 628330 628389 0.462581 - . ID=CGI_10020149; scaffold140 TRF Tandem_Repeat 628330 628389 75 + . . scaffold1403 GLEAN mRNA 9174 9205 0.459466 - . ID=CGI_10020155; scaffold1403 TRF Tandem_Repeat 9174 9205 55 + . . scaffold1403 GLEAN mRNA 9254 10001 0.459466 - . ID=CGI_10020155; scaffold1403 TRF Tandem_Repeat 9254 10001 1007 + . . scaffold1403 GLEAN mRNA 11103 11461 0.459466 - . ID=CGI_10020155; scaffold1403 TRF Tandem_Repeat 11103 11461 421 + . . scaffold1403 GLEAN mRNA 13766 14176 0.459466 - . ID=CGI_10020155; scaffold1403 WUBlastX LTR_Pao 13766 14176 76 - . . scaffold1403 GLEAN mRNA 13838 14512 0.459466 - . ID=CGI_10020155; scaffold1403 WUBlastX LTR_Pao 13838 14635 48 - . . scaffold1403 GLEAN mRNA 14529 14635 0.998919 - . ID=CGI_10020156; scaffold1403 WUBlastX LTR_Pao 13838 14635 48 - . . scaffold1403 GLEAN mRNA 72224 72275 0.949651 + . ID=CGI_10020157; scaffold1403 TRF Tandem_Repeat 72224 72275 104 + . . scaffold1403 GLEAN mRNA 96795 96842 0.310867 + . ID=CGI_10020159; scaffold1403 TRF Tandem_Repeat 96795 96842 96 + . . scaffold1403 GLEAN mRNA 97367 97426 0.310867 + . ID=CGI_10020159; scaffold1403 TRF Tandem_Repeat 97367 97426 57 + . . scaffold1403 GLEAN mRNA 127167 127196 0.99383 - . ID=CGI_10020161; scaffold1403 TRF Tandem_Repeat 127167 127196 51 + . . scaffold1403 GLEAN mRNA 133951 133988 0.332039 + . ID=CGI_10020162; scaffold1403 TRF Tandem_Repeat 133951 133988 76 + . . scaffold1403 GLEAN mRNA 143743 145046 0.332039 + . ID=CGI_10020162; scaffold1403 TRF Tandem_Repeat 143743 145046 2135 + . . scaffold1403 GLEAN mRNA 145547 145807 0.332039 + . ID=CGI_10020162; scaffold1403 TRF Tandem_Repeat 145547 145807 369 + . . scaffold1403 GLEAN mRNA 151964 153823 0.999879 + . ID=CGI_10020163; scaffold1403 WUBlastX DNA_Sola 151964 153823 135 + . . scaffold1403 GLEAN mRNA 152807 153829 0.999879 + . ID=CGI_10020163; scaffold1403 WUBlastX DNA_Sola 152807 153829 168 + . . scaffold1403 GLEAN mRNA 176617 176642 0.651047 + . ID=CGI_10020165; scaffold1403 TRF Tandem_Repeat 176617 176642 52 + . . scaffold1403 GLEAN mRNA 182558 182587 0.651047 + . ID=CGI_10020165; scaffold1403 TRF Tandem_Repeat 182558 182587 51 + . . scaffold1403 GLEAN mRNA 183897 183935 0.651047 + . ID=CGI_10020165; scaffold1403 TRF Tandem_Repeat 183897 183935 69 + . . scaffold1403 GLEAN mRNA 184527 184588 0.651047 + . ID=CGI_10020165; scaffold1403 TRF Tandem_Repeat 184527 184588 79 + . . scaffold1403 GLEAN mRNA 309579 310749 0.999994 + . ID=CGI_10020166; scaffold1403 TRF Tandem_Repeat 309579 310749 1469 + . . scaffold1403 GLEAN mRNA 303166 303441 0.999994 + . ID=CGI_10020166; scaffold1403 WUBlastX LTR_DIRS 303166 303441 124 + . . scaffold1403 GLEAN mRNA 303446 305377 0.999994 + . ID=CGI_10020166; scaffold1403 WUBlastX LTR_DIRS 303446 305377 912 + . . scaffold1403 GLEAN mRNA 335913 335994 0.999184 + . ID=CGI_10020167; scaffold1403 TRF Tandem_Repeat 335913 335994 51 + . . scaffold1403 GLEAN mRNA 348224 348311 0.966311 - . ID=CGI_10020168; scaffold1403 TRF Tandem_Repeat 348224 348311 176 + . . scaffold1403 GLEAN mRNA 393159 394067 0.662471 + . ID=CGI_10020172; scaffold1403 WUBlastX LINE_CR1 393159 394067 22 + . . scaffold1403 GLEAN mRNA 407642 407688 0.999675 - . ID=CGI_10020174; scaffold1403 TRF Tandem_Repeat 407642 407688 87 + . . scaffold1403 GLEAN mRNA 434825 435621 0.997486 - . ID=CGI_10020176; scaffold1403 TRF Tandem_Repeat 434825 435621 1337 + . . scaffold1403 GLEAN mRNA 435630 435722 0.997486 - . ID=CGI_10020176; scaffold1403 TRF Tandem_Repeat 435630 435722 96 + . . scaffold1403 GLEAN mRNA 435635 435722 0.997486 - . ID=CGI_10020176; scaffold1403 TRF Tandem_Repeat 435635 435722 113 + . . scaffold1403 GLEAN mRNA 436613 436637 0.997486 - . ID=CGI_10020176; scaffold1403 TRF Tandem_Repeat 436613 436637 50 + . . scaffold1403 GLEAN mRNA 458899 459164 0.980388 + . ID=CGI_10020178; scaffold1403 TRF Tandem_Repeat 458899 459164 370 + . . scaffold1403 GLEAN mRNA 460602 460650 0.980388 + . ID=CGI_10020178; scaffold1403 TRF Tandem_Repeat 460602 460650 52 + . . scaffold1403 GLEAN mRNA 463702 463738 0.980388 + . ID=CGI_10020178; scaffold1403 TRF Tandem_Repeat 463702 463738 74 + . . scaffold1403 GLEAN mRNA 572961 573266 0.734339 - . ID=CGI_10020184; scaffold1403 TRF Tandem_Repeat 572961 573266 375 + . . scaffold1403 GLEAN mRNA 571614 571871 0.734339 - . ID=CGI_10020184; scaffold1403 WUBlastX LTR_Pao 571614 571871 29 - . . scaffold1403 GLEAN mRNA 576409 576496 0.734339 - . ID=CGI_10020184; scaffold1403 TRF Tandem_Repeat 576409 576496 81 + . . scaffold1403 GLEAN mRNA 612223 612819 0.999999 - . ID=CGI_10020188; scaffold1403 WUBlastX LTR_DIRS 612223 613479 233 - . . scaffold1403 GLEAN mRNA 612331 612819 0.999999 - . ID=CGI_10020188; scaffold1403 WUBlastX LTR_DIRS 612331 614001 184 - . . scaffold1403 GLEAN mRNA 616950 617033 0.997653 - . ID=CGI_10020190; scaffold1403 WUBlastX LTR_Pao 616950 617033 36 + . . scaffold1403 GLEAN mRNA 617036 617089 0.997653 - . ID=CGI_10020190; scaffold1403 WUBlastX LTR_Pao 617036 617089 27 + . . scaffold1857 GLEAN mRNA 33453 33540 0.970402 + . ID=CGI_10020194; scaffold1857 TRF Tandem_Repeat 33453 33540 135 + . . scaffold1857 GLEAN mRNA 170575 170622 0.904403 - . ID=CGI_10020198; scaffold1857 TRF Tandem_Repeat 170575 170622 96 + . . scaffold1857 GLEAN mRNA 174555 174602 0.904403 - . ID=CGI_10020198; scaffold1857 TRF Tandem_Repeat 174555 174602 60 + . . scaffold1857 GLEAN mRNA 186195 186226 0.999588 - . ID=CGI_10020199; scaffold1857 TRF Tandem_Repeat 186195 186226 55 + . . scaffold1857 GLEAN mRNA 186623 186918 0.999588 - . ID=CGI_10020199; scaffold1857 TRF Tandem_Repeat 186623 186918 319 + . . scaffold1857 GLEAN mRNA 188043 188189 0.999588 - . ID=CGI_10020199; scaffold1857 TRF Tandem_Repeat 188043 188189 165 + . . scaffold1857 GLEAN mRNA 192492 192546 0.999588 - . ID=CGI_10020199; scaffold1857 TRF Tandem_Repeat 192492 192546 110 + . . scaffold1857 GLEAN mRNA 192762 192813 0.999588 - . ID=CGI_10020199; scaffold1857 TRF Tandem_Repeat 192762 192813 104 + . . scaffold1857 GLEAN mRNA 310502 310558 0.539829 - . ID=CGI_10020202; scaffold1857 TRF Tandem_Repeat 310502 310558 107 + . . scaffold1857 GLEAN mRNA 340678 340741 0.539829 - . ID=CGI_10020202; scaffold1857 TRF Tandem_Repeat 340678 340741 101 + . . scaffold1857 GLEAN mRNA 344520 345161 0.539829 - . ID=CGI_10020202; scaffold1857 TRF Tandem_Repeat 344520 345161 691 + . . scaffold1857 GLEAN mRNA 344520 345161 0.539829 - . ID=CGI_10020202; scaffold1857 TRF Tandem_Repeat 344520 345161 852 + . . scaffold1857 GLEAN mRNA 350825 350990 0.539829 - . ID=CGI_10020202; scaffold1857 TRF Tandem_Repeat 350825 350990 305 + . . scaffold1857 GLEAN mRNA 437094 437669 0.375837 + . ID=CGI_10020210; scaffold1857 WUBlastX LTR_Gypsy-Cigr 437094 437669 195 + . . scaffold1857 GLEAN mRNA 446207 446953 0.375837 + . ID=CGI_10020210; scaffold1857 TRF Tandem_Repeat 446207 446953 870 + . . scaffold1857 GLEAN mRNA 492984 493019 0.99994 - . ID=CGI_10020213; scaffold1857 TRF Tandem_Repeat 492984 493019 72 + . . scaffold1857 GLEAN mRNA 514096 514150 0.984363 - . ID=CGI_10020214; scaffold1857 TRF Tandem_Repeat 514096 514150 56 + . . scaffold1857 GLEAN mRNA 515104 515161 0.984363 - . ID=CGI_10020214; scaffold1857 TRF Tandem_Repeat 515104 515161 116 + . . scaffold1857 GLEAN mRNA 530994 531052 0.951796 - . ID=CGI_10020218; scaffold1857 TRF Tandem_Repeat 530994 531052 118 + . . scaffold1857 GLEAN mRNA 539122 539302 0.951796 - . ID=CGI_10020218; scaffold1857 TRF Tandem_Repeat 539122 539302 150 + . . scaffold1857 GLEAN mRNA 569590 569692 1 - . ID=CGI_10020220; scaffold1857 TRF Tandem_Repeat 569590 569692 172 + . . scaffold1857 GLEAN mRNA 572182 572260 1 - . ID=CGI_10020220; scaffold1857 TRF Tandem_Repeat 572182 572260 63 + . . scaffold1857 GLEAN mRNA 572190 572255 1 - . ID=CGI_10020220; scaffold1857 TRF Tandem_Repeat 572190 572255 53 + . . scaffold1857 GLEAN mRNA 576673 576784 0.916029 - . ID=CGI_10020221; scaffold1857 TRF Tandem_Repeat 576673 576784 125 + . . scaffold1857 GLEAN mRNA 576673 576784 0.916029 - . ID=CGI_10020221; scaffold1857 TRF Tandem_Repeat 576673 576784 145 + . . scaffold489 GLEAN mRNA 38319 38354 0.539397 + . ID=CGI_10020226; scaffold489 TRF Tandem_Repeat 38319 38354 72 + . . scaffold489 GLEAN mRNA 96414 96500 0.603671 - . ID=CGI_10020228; scaffold489 TRF Tandem_Repeat 96414 96500 86 + . . scaffold489 GLEAN mRNA 96960 97032 0.603671 - . ID=CGI_10020228; scaffold489 TRF Tandem_Repeat 96960 97032 146 + . . scaffold489 GLEAN mRNA 97981 98029 0.603671 - . ID=CGI_10020228; scaffold489 TRF Tandem_Repeat 97981 98029 98 + . . scaffold489 GLEAN mRNA 98235 98279 0.603671 - . ID=CGI_10020228; scaffold489 TRF Tandem_Repeat 98235 98279 90 + . . scaffold489 GLEAN mRNA 99402 99572 0.603671 - . ID=CGI_10020228; scaffold489 TRF Tandem_Repeat 99402 99572 105 + . . scaffold489 GLEAN mRNA 99441 99531 0.603671 - . ID=CGI_10020228; scaffold489 TRF Tandem_Repeat 99441 99531 82 + . . scaffold489 GLEAN mRNA 99517 99577 0.603671 - . ID=CGI_10020228; scaffold489 TRF Tandem_Repeat 99517 99577 50 + . . scaffold489 GLEAN mRNA 112001 112126 0.603671 - . ID=CGI_10020228; scaffold489 WUBlastX DNA_Harbinger 112001 112126 124 - . . scaffold489 GLEAN mRNA 112688 113044 0.603671 - . ID=CGI_10020228; scaffold489 WUBlastX DNA_Harbinger 112688 113044 129 - . . scaffold489 GLEAN mRNA 107576 108610 0.603671 - . ID=CGI_10020228; scaffold489 WUBlastX DNA_Crypton 107576 108610 594 - . . scaffold489 GLEAN mRNA 112724 113137 0.603671 - . ID=CGI_10020228; scaffold489 WUBlastX DNA_Harbinger 112724 113137 105 - . . scaffold489 GLEAN mRNA 112760 113209 0.603671 - . ID=CGI_10020228; scaffold489 WUBlastX DNA_Harbinger 112760 113209 22 - . . scaffold489 GLEAN mRNA 132065 132106 0.997525 + . ID=CGI_10020229; scaffold489 TRF Tandem_Repeat 132065 132106 84 + . . scaffold489 GLEAN mRNA 144588 144635 0.989192 + . ID=CGI_10020230; scaffold489 TRF Tandem_Repeat 144588 144635 64 + . . scaffold489 GLEAN mRNA 144808 145499 0.989192 + . ID=CGI_10020230; scaffold489 TRF Tandem_Repeat 144808 145499 965 + . . scaffold489 GLEAN mRNA 149051 149090 0.989192 + . ID=CGI_10020230; scaffold489 TRF Tandem_Repeat 149051 149090 80 + . . scaffold489 GLEAN mRNA 172842 173819 0.332313 - . ID=CGI_10020231; scaffold489 TRF Tandem_Repeat 172842 173819 966 + . . scaffold489 GLEAN mRNA 214035 214073 0.999676 - . ID=CGI_10020233; scaffold489 TRF Tandem_Repeat 214035 214073 78 + . . scaffold489 GLEAN mRNA 215648 216117 0.999676 - . ID=CGI_10020233; scaffold489 TRF Tandem_Repeat 215648 216117 206 + . . scaffold489 GLEAN mRNA 215657 216126 0.999676 - . ID=CGI_10020233; scaffold489 TRF Tandem_Repeat 215657 216126 481 + . . scaffold489 GLEAN mRNA 215660 216126 0.999676 - . ID=CGI_10020233; scaffold489 TRF Tandem_Repeat 215660 216126 469 + . . scaffold489 GLEAN mRNA 215750 215799 0.999676 - . ID=CGI_10020233; scaffold489 TRF Tandem_Repeat 215750 215799 55 + . . scaffold489 GLEAN mRNA 215968 216042 0.999676 - . ID=CGI_10020233; scaffold489 TRF Tandem_Repeat 215968 216042 60 + . . scaffold489 GLEAN mRNA 216008 216075 0.999676 - . ID=CGI_10020233; scaffold489 TRF Tandem_Repeat 216008 216075 52 + . . scaffold489 GLEAN mRNA 222867 222916 0.999676 - . ID=CGI_10020233; scaffold489 TRF Tandem_Repeat 222867 222916 100 + . . scaffold489 GLEAN mRNA 222916 222959 0.999676 - . ID=CGI_10020233; scaffold489 TRF Tandem_Repeat 222916 222959 88 + . . scaffold489 GLEAN mRNA 364003 364233 0.969929 + . ID=CGI_10020244; scaffold489 TRF Tandem_Repeat 364003 364233 141 + . . scaffold489 GLEAN mRNA 364321 364351 0.969929 + . ID=CGI_10020244; scaffold489 TRF Tandem_Repeat 364321 364351 62 + . . scaffold489 GLEAN mRNA 380689 380881 0.999732 - . ID=CGI_10020247; scaffold489 TRF Tandem_Repeat 380689 380881 109 + . . scaffold489 GLEAN mRNA 384199 384246 0.999732 - . ID=CGI_10020247; scaffold489 TRF Tandem_Repeat 384199 384246 96 + . . scaffold489 GLEAN mRNA 397968 398019 0.997832 + . ID=CGI_10020248; scaffold489 TRF Tandem_Repeat 397968 398019 68 + . . scaffold489 GLEAN mRNA 403014 403106 0.997832 + . ID=CGI_10020248; scaffold489 TRF Tandem_Repeat 403014 403106 80 + . . scaffold489 GLEAN mRNA 403025 403780 0.997832 + . ID=CGI_10020248; scaffold489 TRF Tandem_Repeat 403025 403780 746 + . . scaffold489 GLEAN mRNA 471471 472279 0.735232 + . ID=CGI_10020251; scaffold489 TRF Tandem_Repeat 471471 472279 1232 + . . scaffold489 GLEAN mRNA 472302 473188 0.735232 + . ID=CGI_10020251; scaffold489 TRF Tandem_Repeat 472302 473188 1133 + . . scaffold489 GLEAN mRNA 474349 474420 0.735232 + . ID=CGI_10020251; scaffold489 TRF Tandem_Repeat 474349 474420 58 + . . scaffold489 GLEAN mRNA 554133 554171 0.58701 - . ID=CGI_10020253; scaffold489 TRF Tandem_Repeat 554133 554171 69 + . . scaffold489 GLEAN mRNA 559324 559356 0.58701 - . ID=CGI_10020253; scaffold489 TRF Tandem_Repeat 559324 559356 66 + . . scaffold489 GLEAN mRNA 567677 568027 0.58701 - . ID=CGI_10020253; scaffold489 TRF Tandem_Repeat 567677 568027 152 + . . scaffold489 GLEAN mRNA 567680 568123 0.58701 - . ID=CGI_10020253; scaffold489 TRF Tandem_Repeat 567680 568123 197 + . . scaffold1014 GLEAN mRNA 9125 9173 0.651135 - . ID=CGI_10020255; scaffold1014 TRF Tandem_Repeat 9125 9173 80 + . . scaffold1014 GLEAN mRNA 10630 10669 0.651135 - . ID=CGI_10020255; scaffold1014 TRF Tandem_Repeat 10630 10669 80 + . . scaffold1014 GLEAN mRNA 14282 14579 0.651135 - . ID=CGI_10020255; scaffold1014 TRF Tandem_Repeat 14282 14579 183 + . . scaffold1014 GLEAN mRNA 41410 41660 0.999957 - . ID=CGI_10020257; scaffold1014 TRF Tandem_Repeat 41410 41660 312 + . . scaffold1014 GLEAN mRNA 64596 65213 0.980298 + . ID=CGI_10020260; scaffold1014 WUBlastX DNA_NOF 64596 65213 217 + . . scaffold1014 GLEAN mRNA 69944 70146 0.980298 + . ID=CGI_10020260; scaffold1014 TRF Tandem_Repeat 69944 70146 121 + . . scaffold1014 GLEAN mRNA 89421 89464 1 + . ID=CGI_10020261; scaffold1014 TRF Tandem_Repeat 89421 89464 81 + . . scaffold1014 GLEAN mRNA 90218 90403 1 + . ID=CGI_10020261; scaffold1014 TRF Tandem_Repeat 90218 90403 130 + . . scaffold1014 GLEAN mRNA 128954 129178 0.547668 + . ID=CGI_10020264; scaffold1014 TRF Tandem_Repeat 128954 129178 186 + . . scaffold1014 GLEAN mRNA 139674 140605 0.547668 + . ID=CGI_10020264; scaffold1014 TRF Tandem_Repeat 139674 140605 1468 + . . scaffold1014 GLEAN mRNA 139674 140605 0.547668 + . ID=CGI_10020264; scaffold1014 TRF Tandem_Repeat 139674 140605 1487 + . . scaffold1014 GLEAN mRNA 143502 143533 0.547668 + . ID=CGI_10020264; scaffold1014 TRF Tandem_Repeat 143502 143533 55 + . . scaffold1014 GLEAN mRNA 148266 149122 0.547668 + . ID=CGI_10020264; scaffold1014 TRF Tandem_Repeat 148266 149122 1374 + . . scaffold1014 GLEAN mRNA 149345 149390 0.547668 + . ID=CGI_10020264; scaffold1014 TRF Tandem_Repeat 149345 149390 65 + . . scaffold1014 GLEAN mRNA 149342 149398 0.547668 + . ID=CGI_10020264; scaffold1014 TRF Tandem_Repeat 149342 149398 71 + . . scaffold1014 GLEAN mRNA 150498 150897 0.547668 + . ID=CGI_10020264; scaffold1014 TRF Tandem_Repeat 150498 150897 225 + . . scaffold1014 GLEAN mRNA 156439 156785 0.547668 + . ID=CGI_10020264; scaffold1014 TRF Tandem_Repeat 156439 156785 428 + . . scaffold1014 GLEAN mRNA 168039 168406 0.706516 + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 168039 168406 92 + . . scaffold1014 GLEAN mRNA 168143 168211 0.706516 + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 168143 168211 52 + . . scaffold1014 GLEAN mRNA 168113 168336 0.706516 + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 168113 168336 79 + . . scaffold1014 GLEAN mRNA 168142 168215 0.706516 + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 168142 168215 60 + . . scaffold1014 GLEAN mRNA 168078 168463 0.706516 + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 168078 168463 115 + . . scaffold1014 GLEAN mRNA 171755 171801 0.706516 + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 171755 171801 94 + . . scaffold1014 GLEAN mRNA 173066 173328 0.706516 + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 173066 173328 205 + . . scaffold1014 GLEAN mRNA 191413 191663 0.706516 + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 191413 191663 213 + . . scaffold1014 GLEAN mRNA 197367 197501 0.706516 + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 197367 197501 78 + . . scaffold1014 GLEAN mRNA 163668 164231 0.706516 + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 162610 164231 1880 + . . scaffold1014 GLEAN mRNA 163668 164233 0.706516 + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 162610 164233 1892 + . . scaffold1014 GLEAN mRNA 163668 164231 0.706516 + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 162610 164231 1890 + . . scaffold1014 GLEAN mRNA 204755 205479 1 + . ID=CGI_10020266; scaffold1014 TRF Tandem_Repeat 204755 205479 1234 + . . scaffold1014 GLEAN mRNA 348043 348068 0.955707 - . ID=CGI_10020270; scaffold1014 TRF Tandem_Repeat 348043 348068 52 + . . scaffold1014 GLEAN mRNA 498442 499256 0.614012 - . ID=CGI_10020274; scaffold1014 TRF Tandem_Repeat 498442 499256 1209 + . . scaffold1014 GLEAN mRNA 501327 501400 0.614012 - . ID=CGI_10020274; scaffold1014 TRF Tandem_Repeat 501327 501400 85 + . . scaffold1014 GLEAN mRNA 501327 501400 0.614012 - . ID=CGI_10020274; scaffold1014 TRF Tandem_Repeat 501327 501400 94 + . . scaffold1014 GLEAN mRNA 506238 506297 0.614012 - . ID=CGI_10020274; scaffold1014 TRF Tandem_Repeat 506238 506297 75 + . . scaffold1014 GLEAN mRNA 506238 506297 0.614012 - . ID=CGI_10020274; scaffold1014 TRF Tandem_Repeat 506238 506297 93 + . . scaffold1014 GLEAN mRNA 516343 517020 0.614012 - . ID=CGI_10020274; scaffold1014 WUBlastX DNA_Crypton 516343 517020 65 - . . scaffold1014 GLEAN mRNA 516205 516987 0.614012 - . ID=CGI_10020274; scaffold1014 WUBlastX DNA_Crypton 516205 516987 31 - . . scaffold1014 GLEAN mRNA 564193 564961 0.621641 - . ID=CGI_10020275; scaffold1014 TRF Tandem_Repeat 564193 564961 1202 + . . scaffold1014 GLEAN mRNA 569597 569624 0.621641 - . ID=CGI_10020275; scaffold1014 TRF Tandem_Repeat 569597 569624 56 + . . scaffold1014 GLEAN mRNA 572663 573371 0.621641 - . ID=CGI_10020275; scaffold1014 TRF Tandem_Repeat 572663 573371 940 + . . scaffold1014 GLEAN mRNA 591370 591849 0.621641 - . ID=CGI_10020275; scaffold1014 WUBlastX LINE_L1-Tx1 591370 591849 279 - . . scaffold1014 GLEAN mRNA 593595 594122 0.621641 - . ID=CGI_10020275; scaffold1014 WUBlastX LINE_L2 593595 594122 82 - . . scaffold1014 GLEAN mRNA 593685 594149 0.621641 - . ID=CGI_10020275; scaffold1014 WUBlastX LINE_L2 593685 594149 89 - . . scaffold1014 GLEAN mRNA 591569 592495 0.621641 - . ID=CGI_10020275; scaffold1014 WUBlastX LINE_L1-Tx1 591569 592495 261 - . . scaffold1014 GLEAN mRNA 592692 593300 0.621641 - . ID=CGI_10020275; scaffold1014 WUBlastX LINE_L1-Tx1 592692 593300 385 - . . scaffold1014 GLEAN mRNA 592492 592731 0.621641 - . ID=CGI_10020275; scaffold1014 WUBlastX LINE_L1 592492 592731 91 - . . scaffold1014 GLEAN mRNA 616596 616661 0.441524 + . ID=CGI_10020277; scaffold1014 TRF Tandem_Repeat 616596 616661 105 + . . scaffold535 GLEAN mRNA 4266 4967 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 4266 4967 372 - . . scaffold535 GLEAN mRNA 2812 3006 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 2812 3006 28 + . . scaffold535 GLEAN mRNA 3753 3890 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 3753 3890 59 + . . scaffold535 GLEAN mRNA 4134 5012 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 4134 5012 204 - . . scaffold535 GLEAN mRNA 2848 2949 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 2848 2949 30 + . . scaffold535 GLEAN mRNA 3215 3352 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 3215 3352 20 + . . scaffold535 GLEAN mRNA 4002 4181 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 4002 4181 50 + . . scaffold535 GLEAN mRNA 3227 3325 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 3227 3325 23 + . . scaffold535 GLEAN mRNA 3963 4175 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 3963 4175 24 + . . scaffold535 GLEAN mRNA 39920 39963 0.999612 - . ID=CGI_10020281; scaffold535 TRF Tandem_Repeat 39920 39963 88 + . . scaffold535 GLEAN mRNA 91613 91674 0.999999 + . ID=CGI_10020282; scaffold535 TRF Tandem_Repeat 91613 91674 54 + . . scaffold535 GLEAN mRNA 91614 91655 0.999999 + . ID=CGI_10020282; scaffold535 TRF Tandem_Repeat 91614 91655 50 + . . scaffold535 GLEAN mRNA 91613 91674 0.999999 + . ID=CGI_10020282; scaffold535 TRF Tandem_Repeat 91613 91674 54 + . . scaffold535 GLEAN mRNA 111718 111769 0.592399 + . ID=CGI_10020283; scaffold535 TRF Tandem_Repeat 111718 111769 104 + . . scaffold535 GLEAN mRNA 115194 116097 0.592399 + . ID=CGI_10020283; scaffold535 TRF Tandem_Repeat 115194 116097 1016 + . . scaffold535 GLEAN mRNA 123225 123268 0.592399 + . ID=CGI_10020283; scaffold535 TRF Tandem_Repeat 123225 123268 88 + . . scaffold535 GLEAN mRNA 116865 117125 0.592399 + . ID=CGI_10020283; scaffold535 WUBlastX DNA_TcMar-Tc1 116865 117125 50 + . . scaffold535 GLEAN mRNA 116665 116853 0.592399 + . ID=CGI_10020283; scaffold535 WUBlastX DNA_TcMar-Tc1 116665 116853 42 + . . scaffold535 GLEAN mRNA 116844 116948 0.592399 + . ID=CGI_10020283; scaffold535 WUBlastX DNA_TcMar-Tc1 116844 116948 44 + . . scaffold535 GLEAN mRNA 117066 117137 0.592399 + . ID=CGI_10020283; scaffold535 WUBlastX DNA_TcMar-Tc1 117066 117137 51 + . . scaffold535 GLEAN mRNA 142716 142757 0.592399 + . ID=CGI_10020283; scaffold535 TRF Tandem_Repeat 142716 142757 52 + . . scaffold535 GLEAN mRNA 142930 145080 0.592399 + . ID=CGI_10020283; scaffold535 TRF Tandem_Repeat 142930 145080 2402 + . . scaffold535 GLEAN mRNA 154350 154389 0.592399 + . ID=CGI_10020283; scaffold535 TRF Tandem_Repeat 154350 154389 50 + . . scaffold535 GLEAN mRNA 163238 163271 0.999251 + . ID=CGI_10020284; scaffold535 TRF Tandem_Repeat 163238 163271 52 + . . scaffold535 GLEAN mRNA 163459 163525 0.999251 + . ID=CGI_10020284; scaffold535 TRF Tandem_Repeat 163459 163525 80 + . . scaffold535 GLEAN mRNA 177133 177302 0.999251 + . ID=CGI_10020284; scaffold535 TRF Tandem_Repeat 177133 177302 189 + . . scaffold535 GLEAN mRNA 165614 169306 0.999251 + . ID=CGI_10020284; scaffold535 WUBlastX LINE_L1-Tx1 165614 169306 1353 + . . scaffold535 GLEAN mRNA 166325 169327 0.999251 + . ID=CGI_10020284; scaffold535 WUBlastX LINE_L1-Tx1 166325 169327 1379 + . . scaffold535 GLEAN mRNA 205910 206273 0.527373 - . ID=CGI_10020285; scaffold535 TRF Tandem_Repeat 205910 206273 577 + . . scaffold535 GLEAN mRNA 215332 215407 0.999993 + . ID=CGI_10020286; scaffold535 TRF Tandem_Repeat 215332 215407 152 + . . scaffold535 GLEAN mRNA 217222 217255 0.999993 + . ID=CGI_10020286; scaffold535 TRF Tandem_Repeat 217222 217255 68 + . . scaffold535 GLEAN mRNA 248933 248988 0.999949 - . ID=CGI_10020288; scaffold535 TRF Tandem_Repeat 248933 248988 112 + . . scaffold535 GLEAN mRNA 328232 328272 0.688432 + . ID=CGI_10020290; scaffold535 TRF Tandem_Repeat 328232 328272 82 + . . scaffold535 GLEAN mRNA 329680 329983 0.688432 + . ID=CGI_10020290; scaffold535 TRF Tandem_Repeat 329680 329983 365 + . . scaffold535 GLEAN mRNA 335115 335158 0.688432 + . ID=CGI_10020290; scaffold535 TRF Tandem_Repeat 335115 335158 88 + . . scaffold535 GLEAN mRNA 351972 352010 0.688432 + . ID=CGI_10020290; scaffold535 TRF Tandem_Repeat 351972 352010 78 + . . scaffold535 GLEAN mRNA 453809 454131 0.999613 + . ID=CGI_10020294; scaffold535 TRF Tandem_Repeat 453809 454131 405 + . . scaffold535 GLEAN mRNA 461207 461454 0.905842 - . ID=CGI_10020295; scaffold535 TRF Tandem_Repeat 461207 461454 392 + . . scaffold535 GLEAN mRNA 463477 463531 0.905842 - . ID=CGI_10020295; scaffold535 TRF Tandem_Repeat 463477 463531 67 + . . scaffold535 GLEAN mRNA 463494 463539 0.905842 - . ID=CGI_10020295; scaffold535 TRF Tandem_Repeat 463494 463539 58 + . . scaffold535 GLEAN mRNA 472548 472583 0.905842 - . ID=CGI_10020295; scaffold535 TRF Tandem_Repeat 472548 472583 72 + . . scaffold535 GLEAN mRNA 473087 473216 0.905842 - . ID=CGI_10020295; scaffold535 TRF Tandem_Repeat 473087 473216 233 + . . scaffold535 GLEAN mRNA 486392 486472 0.960286 + . ID=CGI_10020296; scaffold535 TRF Tandem_Repeat 486392 486472 162 + . . scaffold535 GLEAN mRNA 486538 486590 0.960286 + . ID=CGI_10020296; scaffold535 TRF Tandem_Repeat 486538 486590 99 + . . scaffold535 GLEAN mRNA 486785 486819 0.960286 + . ID=CGI_10020296; scaffold535 TRF Tandem_Repeat 486785 486819 70 + . . scaffold535 GLEAN mRNA 501435 501478 1 - . ID=CGI_10020297; scaffold535 TRF Tandem_Repeat 501435 501478 88 + . . scaffold535 GLEAN mRNA 503863 503898 1 - . ID=CGI_10020297; scaffold535 TRF Tandem_Repeat 503863 503898 72 + . . scaffold535 GLEAN mRNA 506245 506522 1 - . ID=CGI_10020297; scaffold535 TRF Tandem_Repeat 506245 506522 439 + . . scaffold535 GLEAN mRNA 506220 506528 1 - . ID=CGI_10020297; scaffold535 TRF Tandem_Repeat 506220 506528 438 + . . scaffold535 GLEAN mRNA 506816 508193 1 - . ID=CGI_10020297; scaffold535 TRF Tandem_Repeat 506816 508193 1991 + . . scaffold535 GLEAN mRNA 556338 556538 0.477113 + . ID=CGI_10020299; scaffold535 WUBlastX LTR_Copia 556338 556538 36 + . . scaffold535 GLEAN mRNA 556650 556775 0.477113 + . ID=CGI_10020299; scaffold535 WUBlastX LTR_Gypsy 556650 556775 32 + . . scaffold535 GLEAN mRNA 556749 556955 0.477113 + . ID=CGI_10020299; scaffold535 WUBlastX LTR_Copia 556749 556955 34 + . . scaffold535 GLEAN mRNA 556185 556580 0.477113 + . ID=CGI_10020299; scaffold535 WUBlastX LTR_Copia 556185 556580 22 + . . scaffold535 GLEAN mRNA 556233 556478 0.477113 + . ID=CGI_10020299; scaffold535 WUBlastX LTR_Copia 556233 556478 28 + . . scaffold535 GLEAN mRNA 562307 562339 0.477113 + . ID=CGI_10020299; scaffold535 TRF Tandem_Repeat 562307 562339 57 + . . scaffold535 GLEAN mRNA 557243 558085 0.477113 + . ID=CGI_10020299; scaffold535 WUBlastX LTR_Gypsy 557243 558085 403 + . . scaffold535 GLEAN mRNA 558487 558741 0.477113 + . ID=CGI_10020299; scaffold535 WUBlastX LTR_Gypsy 558487 558741 49 + . . scaffold535 GLEAN mRNA 559381 559530 0.477113 + . ID=CGI_10020299; scaffold535 WUBlastX LTR_Gypsy 559381 559530 50 + . . scaffold535 GLEAN mRNA 557243 558244 0.477113 + . ID=CGI_10020299; scaffold535 WUBlastX LTR_Gypsy 557243 558244 303 + . . scaffold535 GLEAN mRNA 565767 566633 0.883286 + . ID=CGI_10020301; scaffold535 WUBlastX LINE_CR1-L2 565767 566633 75 + . . scaffold535 GLEAN mRNA 565655 565786 0.883286 + . ID=CGI_10020301; scaffold535 WUBlastX LINE_CR1-L2 565655 565786 40 + . . scaffold535 GLEAN mRNA 565628 565780 0.883286 + . ID=CGI_10020301; scaffold535 WUBlastX LINE_CR1-L2 565628 565780 26 + . . scaffold535 GLEAN mRNA 565996 566232 0.883286 + . ID=CGI_10020301; scaffold535 WUBlastX LINE_CR1-L2 565996 566232 157 + . . scaffold535 GLEAN mRNA 565703 565780 0.883286 + . ID=CGI_10020301; scaffold535 WUBlastX LINE_L2 565703 565780 45 + . . scaffold535 GLEAN mRNA 566232 566645 0.883286 + . ID=CGI_10020301; scaffold535 WUBlastX LINE_L2 566232 566645 131 + . . scaffold535 GLEAN mRNA 566627 566806 0.883286 + . ID=CGI_10020301; scaffold535 WUBlastX LINE_L2 566627 566806 49 + . . scaffold535 GLEAN mRNA 593297 593327 1 + . ID=CGI_10020302; scaffold535 TRF Tandem_Repeat 593297 593327 53 + . . scaffold522 GLEAN mRNA 1363 1451 1 + . ID=CGI_10020305; scaffold522 TRF Tandem_Repeat 1363 1451 153 + . . scaffold522 GLEAN mRNA 2495 2522 1 + . ID=CGI_10020305; scaffold522 TRF Tandem_Repeat 2495 2522 56 + . . scaffold522 GLEAN mRNA 26328 26371 0.999676 + . ID=CGI_10020307; scaffold522 TRF Tandem_Repeat 26328 26371 88 + . . scaffold522 GLEAN mRNA 44706 44759 0.309989 + . ID=CGI_10020308; scaffold522 TRF Tandem_Repeat 44706 44759 108 + . . scaffold522 GLEAN mRNA 67825 68005 0.997371 - . ID=CGI_10020310; scaffold522 TRF Tandem_Repeat 67825 68005 190 + . . scaffold522 GLEAN mRNA 67846 68109 0.997371 - . ID=CGI_10020310; scaffold522 TRF Tandem_Repeat 67846 68109 179 + . . scaffold522 GLEAN mRNA 76878 76921 0.997371 - . ID=CGI_10020310; scaffold522 TRF Tandem_Repeat 76878 76921 79 + . . scaffold522 GLEAN mRNA 79980 80009 0.997371 - . ID=CGI_10020310; scaffold522 TRF Tandem_Repeat 79980 80009 60 + . . scaffold522 GLEAN mRNA 84792 84928 0.997371 - . ID=CGI_10020310; scaffold522 TRF Tandem_Repeat 84792 84928 127 + . . scaffold522 GLEAN mRNA 76878 76921 0.999349 + . ID=CGI_10020311; scaffold522 TRF Tandem_Repeat 76878 76921 79 + . . scaffold522 GLEAN mRNA 79980 80009 0.999349 + . ID=CGI_10020311; scaffold522 TRF Tandem_Repeat 79980 80009 60 + . . scaffold522 GLEAN mRNA 158483 158653 0.999866 - . ID=CGI_10020315; scaffold522 TRF Tandem_Repeat 158483 158653 170 + . . scaffold522 GLEAN mRNA 180034 181878 0.99999 + . ID=CGI_10020318; scaffold522 TRF Tandem_Repeat 180034 181878 2308 + . . scaffold522 GLEAN mRNA 193372 193413 0.862649 - . ID=CGI_10020319; scaffold522 TRF Tandem_Repeat 193372 193413 84 + . . scaffold522 GLEAN mRNA 221750 221793 0.999661 + . ID=CGI_10020320; scaffold522 TRF Tandem_Repeat 221750 221793 88 + . . scaffold522 GLEAN mRNA 227791 227868 0.999661 + . ID=CGI_10020320; scaffold522 TRF Tandem_Repeat 227791 227868 156 + . . scaffold522 GLEAN mRNA 227798 227906 0.999661 + . ID=CGI_10020320; scaffold522 TRF Tandem_Repeat 227798 227906 76 + . . scaffold522 GLEAN mRNA 223948 224364 0.999661 + . ID=CGI_10020320; scaffold522 WUBlastX LINE_RTE-X 223948 224364 34 + . . scaffold522 GLEAN mRNA 224017 224388 0.999661 + . ID=CGI_10020320; scaffold522 WUBlastX LINE_RTE-X 224017 224388 68 + . . scaffold522 GLEAN mRNA 224020 224229 0.999661 + . ID=CGI_10020320; scaffold522 WUBlastX LINE_RTE-X 224020 224229 74 + . . scaffold522 GLEAN mRNA 258195 258871 0.866473 + . ID=CGI_10020324; scaffold522 TRF Tandem_Repeat 258195 258871 1175 + . . scaffold522 GLEAN mRNA 258195 259449 0.866473 + . ID=CGI_10020324; scaffold522 TRF Tandem_Repeat 258195 259449 1332 + . . scaffold522 GLEAN mRNA 258873 259449 0.866473 + . ID=CGI_10020324; scaffold522 TRF Tandem_Repeat 258873 259449 1015 + . . scaffold522 GLEAN mRNA 279834 279877 0.988365 - . ID=CGI_10020325; scaffold522 TRF Tandem_Repeat 279834 279877 61 + . . scaffold522 GLEAN mRNA 295574 295628 0.988365 - . ID=CGI_10020325; scaffold522 TRF Tandem_Repeat 295574 295628 101 + . . scaffold522 GLEAN mRNA 299729 300507 0.988365 - . ID=CGI_10020325; scaffold522 TRF Tandem_Repeat 299729 300507 1328 + . . scaffold522 GLEAN mRNA 300516 300559 0.988365 - . ID=CGI_10020325; scaffold522 TRF Tandem_Repeat 300516 300559 61 + . . scaffold522 GLEAN mRNA 294911 294955 0.988365 - . ID=CGI_10020325; scaffold522 TRF Tandem_Repeat 294911 294955 90 + . . scaffold522 GLEAN mRNA 359909 360040 0.999949 - . ID=CGI_10020327; scaffold522 TRF Tandem_Repeat 359909 360040 119 + . . scaffold522 GLEAN mRNA 361607 361684 0.999949 - . ID=CGI_10020327; scaffold522 TRF Tandem_Repeat 361607 361684 52 + . . scaffold522 GLEAN mRNA 393754 393817 0.999405 + . ID=CGI_10020330; scaffold522 TRF Tandem_Repeat 393754 393817 128 + . . scaffold522 GLEAN mRNA 416539 416620 0.890754 - . ID=CGI_10020331; scaffold522 TRF Tandem_Repeat 416539 416620 113 + . . scaffold522 GLEAN mRNA 421207 421306 0.890754 - . ID=CGI_10020331; scaffold522 TRF Tandem_Repeat 421207 421306 56 + . . scaffold522 GLEAN mRNA 421198 421291 0.890754 - . ID=CGI_10020331; scaffold522 TRF Tandem_Repeat 421198 421291 77 + . . scaffold522 GLEAN mRNA 427939 428002 0.890754 - . ID=CGI_10020331; scaffold522 TRF Tandem_Repeat 427939 428002 51 + . . scaffold522 GLEAN mRNA 429072 429106 0.890754 - . ID=CGI_10020331; scaffold522 TRF Tandem_Repeat 429072 429106 63 + . . scaffold522 GLEAN mRNA 429155 429201 0.890754 - . ID=CGI_10020331; scaffold522 TRF Tandem_Repeat 429155 429201 94 + . . scaffold522 GLEAN mRNA 473548 473604 0.761227 + . ID=CGI_10020332; scaffold522 TRF Tandem_Repeat 473548 473604 60 + . . scaffold522 GLEAN mRNA 489656 489821 0.995871 - . ID=CGI_10020333; scaffold522 TRF Tandem_Repeat 489656 489821 98 + . . scaffold522 GLEAN mRNA 489637 489831 0.995871 - . ID=CGI_10020333; scaffold522 TRF Tandem_Repeat 489637 489831 354 + . . scaffold522 GLEAN mRNA 489615 489831 0.995871 - . ID=CGI_10020333; scaffold522 TRF Tandem_Repeat 489615 489831 163 + . . scaffold522 GLEAN mRNA 490866 490997 0.995871 - . ID=CGI_10020333; scaffold522 TRF Tandem_Repeat 490866 490997 93 + . . scaffold522 GLEAN mRNA 490859 491007 0.995871 - . ID=CGI_10020333; scaffold522 TRF Tandem_Repeat 490859 491007 289 + . . scaffold522 GLEAN mRNA 490880 491035 0.995871 - . ID=CGI_10020333; scaffold522 TRF Tandem_Repeat 490880 491035 136 + . . scaffold522 GLEAN mRNA 493979 494015 0.995871 - . ID=CGI_10020333; scaffold522 TRF Tandem_Repeat 493979 494015 65 + . . scaffold522 GLEAN mRNA 496991 497406 0.995871 - . ID=CGI_10020333; scaffold522 TRF Tandem_Repeat 496991 497406 447 + . . scaffold522 GLEAN mRNA 497559 497842 0.995871 - . ID=CGI_10020333; scaffold522 TRF Tandem_Repeat 497559 497842 301 + . . scaffold522 GLEAN mRNA 498736 498797 0.995871 - . ID=CGI_10020333; scaffold522 TRF Tandem_Repeat 498736 498797 124 + . . scaffold522 GLEAN mRNA 556642 556986 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 556642 556986 172 - . . scaffold522 GLEAN mRNA 555724 556293 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 555724 556293 62 - . . scaffold522 GLEAN mRNA 556303 556833 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 556303 556833 194 - . . scaffold522 GLEAN mRNA 556174 556293 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 556174 556293 70 - . . scaffold522 GLEAN mRNA 555939 556103 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 555939 556103 90 - . . scaffold522 GLEAN mRNA 556195 556488 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 556195 556488 119 - . . scaffold522 GLEAN mRNA 555972 556106 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 555972 556106 93 - . . scaffold522 GLEAN mRNA 555972 556139 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 555972 556139 67 - . . scaffold522 GLEAN mRNA 555579 556106 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 555579 556106 45 - . . scaffold522 GLEAN mRNA 557542 557715 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 557542 557715 40 - . . scaffold522 GLEAN mRNA 557135 557476 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 557135 557476 192 - . . scaffold522 GLEAN mRNA 557062 557181 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 557062 557181 44 - . . scaffold522 GLEAN mRNA 556711 557076 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 556711 557076 50 - . . scaffold522 GLEAN mRNA 580147 580183 1 + . ID=CGI_10020340; scaffold522 TRF Tandem_Repeat 580147 580183 74 + . . scaffold522 GLEAN mRNA 595061 595094 0.998058 - . ID=CGI_10020341; scaffold522 TRF Tandem_Repeat 595061 595094 68 + . . scaffold522 GLEAN mRNA 612811 612885 0.558019 - . ID=CGI_10020343; scaffold522 TRF Tandem_Repeat 612811 612885 141 + . . scaffold522 GLEAN mRNA 612811 612885 1 + . ID=CGI_10020344; scaffold522 TRF Tandem_Repeat 612811 612885 141 + . . scaffold522 GLEAN mRNA 615820 615854 1 + . ID=CGI_10020344; scaffold522 TRF Tandem_Repeat 615820 615854 70 + . . scaffold522 GLEAN mRNA 639394 639423 0.721364 + . ID=CGI_10020347; scaffold522 TRF Tandem_Repeat 639394 639423 51 + . . scaffold522 GLEAN mRNA 639927 639970 0.721364 + . ID=CGI_10020347; scaffold522 TRF Tandem_Repeat 639927 639970 88 + . . scaffold1104 GLEAN mRNA 2567 2666 0.63898 - . ID=CGI_10020349; scaffold1104 TRF Tandem_Repeat 2567 2666 96 + . . scaffold1104 GLEAN mRNA 16515 16627 0.534088 + . ID=CGI_10020351; scaffold1104 TRF Tandem_Repeat 16515 16627 130 + . . scaffold1104 GLEAN mRNA 16515 16626 0.534088 + . ID=CGI_10020351; scaffold1104 TRF Tandem_Repeat 16515 16626 163 + . . scaffold1104 GLEAN mRNA 16515 16627 0.534088 + . ID=CGI_10020351; scaffold1104 TRF Tandem_Repeat 16515 16627 122 + . . scaffold1104 GLEAN mRNA 22498 22690 0.534088 + . ID=CGI_10020351; scaffold1104 TRF Tandem_Repeat 22498 22690 242 + . . scaffold1104 GLEAN mRNA 22498 22690 0.534088 + . ID=CGI_10020351; scaffold1104 TRF Tandem_Repeat 22498 22690 271 + . . scaffold1104 GLEAN mRNA 74200 75387 0.999673 + . ID=CGI_10020353; scaffold1104 TRF Tandem_Repeat 74200 75387 1765 + . . scaffold1104 GLEAN mRNA 80158 81195 0.999673 + . ID=CGI_10020353; scaffold1104 WUBlastX DNA_TcMar-Tc1 80158 81195 431 - . . scaffold1104 GLEAN mRNA 98869 98906 0.94941 - . ID=CGI_10020354; scaffold1104 TRF Tandem_Repeat 98869 98906 58 + . . scaffold1104 GLEAN mRNA 125412 125487 0.889923 - . ID=CGI_10020357; scaffold1104 TRF Tandem_Repeat 125412 125487 55 + . . scaffold1104 GLEAN mRNA 135713 135779 0.999675 + . ID=CGI_10020358; scaffold1104 TRF Tandem_Repeat 135713 135779 134 + . . scaffold1104 GLEAN mRNA 164224 164289 0.499418 + . ID=CGI_10020361; scaffold1104 WUBlastX LINE_RTE-BovB 164224 164289 24 + . . scaffold1104 GLEAN mRNA 165952 167313 0.499418 + . ID=CGI_10020361; scaffold1104 WUBlastX LINE_RTE-X 165952 167313 377 + . . scaffold1104 GLEAN mRNA 165090 165974 0.499418 + . ID=CGI_10020361; scaffold1104 WUBlastX LINE_RTE-X 165090 165974 403 + . . scaffold1104 GLEAN mRNA 164239 165129 0.499418 + . ID=CGI_10020361; scaffold1104 WUBlastX LINE_RTE-X 164239 165129 281 + . . scaffold1104 GLEAN mRNA 168249 168659 0.499418 + . ID=CGI_10020361; scaffold1104 WUBlastX DNA_hAT-hATw 168249 168659 85 - . . scaffold1104 GLEAN mRNA 224057 224102 0.915732 + . ID=CGI_10020366; scaffold1104 TRF Tandem_Repeat 224057 224102 92 + . . scaffold1104 GLEAN mRNA 224760 224807 0.915732 + . ID=CGI_10020366; scaffold1104 TRF Tandem_Repeat 224760 224807 96 + . . scaffold1104 GLEAN mRNA 261512 261536 0.565401 - . ID=CGI_10020369; scaffold1104 TRF Tandem_Repeat 261512 261536 50 + . . scaffold1104 GLEAN mRNA 266964 267050 0.565401 - . ID=CGI_10020369; scaffold1104 TRF Tandem_Repeat 266964 267050 113 + . . scaffold1104 GLEAN mRNA 267144 267317 0.565401 - . ID=CGI_10020369; scaffold1104 TRF Tandem_Repeat 267144 267317 154 + . . scaffold1104 GLEAN mRNA 267344 267564 0.565401 - . ID=CGI_10020369; scaffold1104 TRF Tandem_Repeat 267344 267564 228 + . . scaffold1104 GLEAN mRNA 272548 272595 0.999999 + . ID=CGI_10020370; scaffold1104 TRF Tandem_Repeat 272548 272595 96 + . . scaffold1104 GLEAN mRNA 344669 344694 0.789863 + . ID=CGI_10020376; scaffold1104 TRF Tandem_Repeat 344669 344694 52 + . . scaffold1104 GLEAN mRNA 366100 366137 0.999976 + . ID=CGI_10020378; scaffold1104 TRF Tandem_Repeat 366100 366137 76 + . . scaffold1104 GLEAN mRNA 367571 367616 0.999976 + . ID=CGI_10020378; scaffold1104 TRF Tandem_Repeat 367571 367616 85 + . . scaffold1104 GLEAN mRNA 391470 392162 1 - . ID=CGI_10020381; scaffold1104 TRF Tandem_Repeat 391470 392162 1054 + . . scaffold1104 GLEAN mRNA 392162 393043 1 - . ID=CGI_10020381; scaffold1104 TRF Tandem_Repeat 392162 393043 1281 + . . scaffold1104 GLEAN mRNA 406337 406412 0.613506 - . ID=CGI_10020382; scaffold1104 TRF Tandem_Repeat 406337 406412 89 + . . scaffold1104 GLEAN mRNA 420341 420365 0.613506 - . ID=CGI_10020382; scaffold1104 TRF Tandem_Repeat 420341 420365 50 + . . scaffold1104 GLEAN mRNA 420700 420736 0.613506 - . ID=CGI_10020382; scaffold1104 TRF Tandem_Repeat 420700 420736 74 + . . scaffold1104 GLEAN mRNA 427462 427665 0.999372 + . ID=CGI_10020385; scaffold1104 WUBlastX LINE_R2-Hero 427144 427665 105 + . . scaffold1104 GLEAN mRNA 453207 453255 0.998829 + . ID=CGI_10020387; scaffold1104 TRF Tandem_Repeat 453207 453255 98 + . . scaffold1104 GLEAN mRNA 472308 472367 0.999997 - . ID=CGI_10020388; scaffold1104 TRF Tandem_Repeat 472308 472367 120 + . . scaffold1104 GLEAN mRNA 517496 518449 0.99448 - . ID=CGI_10020391; scaffold1104 WUBlastX LINE_CR1 517496 518449 599 + . . scaffold1104 GLEAN mRNA 516130 517539 0.99448 - . ID=CGI_10020391; scaffold1104 WUBlastX LINE_CR1 516130 517539 852 + . . scaffold1104 GLEAN mRNA 526370 526582 0.99448 - . ID=CGI_10020391; scaffold1104 WUBlastX DNA_Kolobok-IS4 526370 526582 71 - . . scaffold1104 GLEAN mRNA 526054 526491 0.99448 - . ID=CGI_10020391; scaffold1104 WUBlastX DNA_IS4EU 526054 526491 94 - . . scaffold1104 GLEAN mRNA 526457 526663 0.99448 - . ID=CGI_10020391; scaffold1104 WUBlastX DNA_IS4EU 526457 526663 70 - . . scaffold1104 GLEAN mRNA 525979 526422 0.99448 - . ID=CGI_10020391; scaffold1104 WUBlastX DNA_IS4EU 525979 526422 182 - . . scaffold1104 GLEAN mRNA 527309 528067 0.99448 - . ID=CGI_10020391; scaffold1104 WUBlastX DNA_Kolobok-IS4 527309 528067 309 + . . scaffold1104 GLEAN mRNA 526370 526582 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_Kolobok-IS4 526370 526582 71 - . . scaffold1104 GLEAN mRNA 526054 526491 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_IS4EU 526054 526491 94 - . . scaffold1104 GLEAN mRNA 526457 526663 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_IS4EU 526457 526663 70 - . . scaffold1104 GLEAN mRNA 525979 526422 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_IS4EU 525979 526422 182 - . . scaffold1104 GLEAN mRNA 529086 529271 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_IS4EU 529086 529271 69 - . . scaffold1104 GLEAN mRNA 527309 528067 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_Kolobok-IS4 527309 528067 309 + . . scaffold1104 GLEAN mRNA 606591 606626 0.999624 + . ID=CGI_10020394; scaffold1104 TRF Tandem_Repeat 606591 606626 72 + . . scaffold1104 GLEAN mRNA 611322 611360 0.999624 + . ID=CGI_10020394; scaffold1104 TRF Tandem_Repeat 611322 611360 69 + . . scaffold1104 GLEAN mRNA 624784 624835 0.7001 + . ID=CGI_10020396; scaffold1104 TRF Tandem_Repeat 624784 624835 77 + . . scaffold315 GLEAN mRNA 30717 31721 0.901071 + . ID=CGI_10020398; scaffold315 WUBlastX DNA_IS4EU 30717 31721 601 + . . scaffold315 GLEAN mRNA 30489 31724 0.901071 + . ID=CGI_10020398; scaffold315 WUBlastX DNA_Kolobok-IS4 30336 31724 346 + . . scaffold315 GLEAN mRNA 38949 39098 0.984467 + . ID=CGI_10020399; scaffold315 TRF Tandem_Repeat 38949 39098 86 + . . scaffold315 GLEAN mRNA 40660 40935 0.984467 + . ID=CGI_10020399; scaffold315 WUBlastX DNA_Kolobok 40660 40935 101 + . . scaffold315 GLEAN mRNA 41562 41783 0.984467 + . ID=CGI_10020399; scaffold315 WUBlastX DNA_Kolobok 41562 41783 61 - . . scaffold315 GLEAN mRNA 41568 41855 0.984467 + . ID=CGI_10020399; scaffold315 WUBlastX DNA_Kolobok 41568 41855 30 - . . scaffold315 GLEAN mRNA 39367 39582 0.984467 + . ID=CGI_10020399; scaffold315 WUBlastX DNA_Kolobok 39367 39582 92 + . . scaffold315 GLEAN mRNA 47411 47445 0.99999 - . ID=CGI_10020400; scaffold315 TRF Tandem_Repeat 47411 47445 52 + . . scaffold315 GLEAN mRNA 66136 66603 0.999323 - . ID=CGI_10020403; scaffold315 TRF Tandem_Repeat 66136 66603 690 + . . scaffold315 GLEAN mRNA 71431 71469 0.999323 - . ID=CGI_10020403; scaffold315 TRF Tandem_Repeat 71431 71469 78 + . . scaffold315 GLEAN mRNA 75725 75786 0.999323 - . ID=CGI_10020403; scaffold315 TRF Tandem_Repeat 75725 75786 108 + . . scaffold315 GLEAN mRNA 75840 75931 0.999323 - . ID=CGI_10020403; scaffold315 TRF Tandem_Repeat 75840 75931 125 + . . scaffold315 GLEAN mRNA 100927 100990 0.966231 + . ID=CGI_10020405; scaffold315 TRF Tandem_Repeat 100927 100990 128 + . . scaffold315 GLEAN mRNA 107716 107758 0.966231 + . ID=CGI_10020405; scaffold315 TRF Tandem_Repeat 107716 107758 68 + . . scaffold315 GLEAN mRNA 123785 123879 0.966231 + . ID=CGI_10020405; scaffold315 TRF Tandem_Repeat 123785 123879 181 + . . scaffold315 GLEAN mRNA 124193 124612 0.966231 + . ID=CGI_10020405; scaffold315 TRF Tandem_Repeat 124193 124612 188 + . . scaffold315 GLEAN mRNA 124115 125142 0.966231 + . ID=CGI_10020405; scaffold315 TRF Tandem_Repeat 124115 125142 941 + . . scaffold315 GLEAN mRNA 124301 125783 0.966231 + . ID=CGI_10020405; scaffold315 TRF Tandem_Repeat 124301 125783 1559 + . . scaffold315 GLEAN mRNA 124614 125783 0.966231 + . ID=CGI_10020405; scaffold315 TRF Tandem_Repeat 124614 125783 552 + . . scaffold315 GLEAN mRNA 124053 125736 0.966231 + . ID=CGI_10020405; scaffold315 TRF Tandem_Repeat 124053 125736 1202 + . . scaffold315 GLEAN mRNA 124301 125827 0.966231 + . ID=CGI_10020405; scaffold315 TRF Tandem_Repeat 124301 125827 1667 + . . scaffold315 GLEAN mRNA 167714 167946 0.921528 + . ID=CGI_10020409; scaffold315 TRF Tandem_Repeat 167714 167946 226 + . . scaffold315 GLEAN mRNA 176242 177041 0.921528 + . ID=CGI_10020409; scaffold315 TRF Tandem_Repeat 176242 177041 681 + . . scaffold315 GLEAN mRNA 178391 178436 0.921528 + . ID=CGI_10020409; scaffold315 TRF Tandem_Repeat 178391 178436 67 + . . scaffold315 GLEAN mRNA 178582 178637 0.921528 + . ID=CGI_10020409; scaffold315 TRF Tandem_Repeat 178582 178637 103 + . . scaffold315 GLEAN mRNA 178914 178951 0.921528 + . ID=CGI_10020409; scaffold315 TRF Tandem_Repeat 178914 178951 51 + . . scaffold315 GLEAN mRNA 183563 185075 0.921528 + . ID=CGI_10020409; scaffold315 TRF Tandem_Repeat 183563 185075 1765 + . . scaffold315 GLEAN mRNA 204209 204892 0.999922 + . ID=CGI_10020410; scaffold315 WUBlastX LTR_Pao 204209 204892 47 - . . scaffold315 GLEAN mRNA 204542 204925 0.999922 + . ID=CGI_10020410; scaffold315 WUBlastX LTR_Pao 204542 204925 101 - . . scaffold315 GLEAN mRNA 204386 204916 0.999922 + . ID=CGI_10020410; scaffold315 WUBlastX LTR_Pao 204386 204916 64 - . . scaffold315 GLEAN mRNA 269550 269576 0.36515 + . ID=CGI_10020413; scaffold315 TRF Tandem_Repeat 269550 269576 54 + . . scaffold315 GLEAN mRNA 274967 275017 0.36515 + . ID=CGI_10020413; scaffold315 TRF Tandem_Repeat 274967 275017 66 + . . scaffold315 GLEAN mRNA 301340 301383 0.935948 + . ID=CGI_10020417; scaffold315 TRF Tandem_Repeat 301340 301383 88 + . . scaffold315 GLEAN mRNA 304850 304948 0.935948 + . ID=CGI_10020417; scaffold315 WUBlastX LINE_RTE-X 304850 304948 43 + . . scaffold315 GLEAN mRNA 305069 305290 0.935948 + . ID=CGI_10020417; scaffold315 WUBlastX LINE_RTE-X 305069 305290 24 + . . scaffold315 GLEAN mRNA 304262 304939 0.935948 + . ID=CGI_10020417; scaffold315 WUBlastX LINE_RTE-BovB 304262 304939 38 + . . scaffold315 GLEAN mRNA 304265 304489 0.935948 + . ID=CGI_10020417; scaffold315 WUBlastX LINE_L2 304265 304489 77 + . . scaffold315 GLEAN mRNA 304970 305173 0.935948 + . ID=CGI_10020417; scaffold315 WUBlastX LINE_RTE-X 304970 305173 24 + . . scaffold315 GLEAN mRNA 305057 305173 0.935948 + . ID=CGI_10020417; scaffold315 WUBlastX LINE_RTE-X 305057 305173 30 + . . scaffold315 GLEAN mRNA 319637 319661 0.935948 + . ID=CGI_10020417; scaffold315 TRF Tandem_Repeat 319637 319661 50 + . . scaffold315 GLEAN mRNA 327128 327197 0.935948 + . ID=CGI_10020417; scaffold315 TRF Tandem_Repeat 327128 327197 140 + . . scaffold315 GLEAN mRNA 318868 318981 0.935948 + . ID=CGI_10020417; scaffold315 WUBlastX LINE_RTE-X 318868 318981 42 + . . scaffold315 GLEAN mRNA 319046 319144 0.935948 + . ID=CGI_10020417; scaffold315 WUBlastX LINE_RTE-X 319046 319144 26 + . . scaffold315 GLEAN mRNA 317905 318000 0.935948 + . ID=CGI_10020417; scaffold315 WUBlastX LINE_RTE-X 317905 318000 21 + . . scaffold315 GLEAN mRNA 339300 339655 0.987517 + . ID=CGI_10020419; scaffold315 TRF Tandem_Repeat 339300 339655 520 + . . scaffold315 GLEAN mRNA 346508 347042 0.987517 + . ID=CGI_10020419; scaffold315 TRF Tandem_Repeat 346508 347042 597 + . . scaffold315 GLEAN mRNA 351580 351616 0.987517 + . ID=CGI_10020419; scaffold315 TRF Tandem_Repeat 351580 351616 74 + . . scaffold315 GLEAN mRNA 346508 347042 0.433545 - . ID=CGI_10020420; scaffold315 TRF Tandem_Repeat 346508 347042 597 + . . scaffold315 GLEAN mRNA 351580 351616 0.433545 - . ID=CGI_10020420; scaffold315 TRF Tandem_Repeat 351580 351616 74 + . . scaffold315 GLEAN mRNA 391510 391770 1 - . ID=CGI_10020424; scaffold315 WUBlastX DNA_hAT 391510 391770 67 - . . scaffold315 GLEAN mRNA 392013 392138 1 - . ID=CGI_10020424; scaffold315 WUBlastX DNA_hAT 392013 392138 38 - . . scaffold315 GLEAN mRNA 392636 392815 1 - . ID=CGI_10020424; scaffold315 WUBlastX DNA_hAT 392636 392815 58 - . . scaffold315 GLEAN mRNA 393576 393671 1 - . ID=CGI_10020424; scaffold315 WUBlastX DNA_hAT 393576 393671 38 - . . scaffold315 GLEAN mRNA 393263 393394 1 - . ID=CGI_10020424; scaffold315 WUBlastX DNA_hAT 393263 393394 26 - . . scaffold315 GLEAN mRNA 395076 395852 1 - . ID=CGI_10020424; scaffold315 WUBlastX DNA_hAT 395076 395864 427 - . . scaffold315 GLEAN mRNA 411584 411753 0.999675 - . ID=CGI_10020425; scaffold315 TRF Tandem_Repeat 411584 411753 340 + . . scaffold315 GLEAN mRNA 413119 413584 0.999675 - . ID=CGI_10020425; scaffold315 TRF Tandem_Repeat 413119 413584 844 + . . scaffold315 GLEAN mRNA 420773 421734 0.999675 - . ID=CGI_10020425; scaffold315 TRF Tandem_Repeat 420773 421734 1538 + . . scaffold315 GLEAN mRNA 421758 421807 0.999675 - . ID=CGI_10020425; scaffold315 TRF Tandem_Repeat 421758 421807 55 + . . scaffold315 GLEAN mRNA 421761 421816 0.999675 - . ID=CGI_10020425; scaffold315 TRF Tandem_Repeat 421761 421816 67 + . . scaffold315 GLEAN mRNA 421758 421816 0.999675 - . ID=CGI_10020425; scaffold315 TRF Tandem_Repeat 421758 421816 82 + . . scaffold315 GLEAN mRNA 421765 421816 0.999675 - . ID=CGI_10020425; scaffold315 TRF Tandem_Repeat 421765 421816 59 + . . scaffold315 GLEAN mRNA 422295 422461 0.999675 - . ID=CGI_10020425; scaffold315 TRF Tandem_Repeat 422295 422461 325 + . . scaffold315 GLEAN mRNA 425094 425166 0.999675 - . ID=CGI_10020425; scaffold315 TRF Tandem_Repeat 425094 425166 69 + . . scaffold315 GLEAN mRNA 427034 427657 0.999057 + . ID=CGI_10020426; scaffold315 WUBlastX DNA_Harbinger 426962 427657 567 + . . scaffold315 GLEAN mRNA 427821 428171 0.999057 + . ID=CGI_10020426; scaffold315 WUBlastX DNA_Harbinger 427821 428171 262 + . . scaffold315 GLEAN mRNA 428180 428236 0.999057 + . ID=CGI_10020426; scaffold315 WUBlastX DNA_Harbinger 428180 428236 24 + . . scaffold315 GLEAN mRNA 427660 427821 0.999057 + . ID=CGI_10020426; scaffold315 WUBlastX DNA_Harbinger 427660 427821 121 + . . scaffold315 GLEAN mRNA 428897 429316 0.999057 + . ID=CGI_10020426; scaffold315 WUBlastX DNA_Harbinger 428897 429316 66 - . . scaffold315 GLEAN mRNA 429650 430009 0.999057 + . ID=CGI_10020426; scaffold315 WUBlastX DNA_Harbinger 429650 430009 40 - . . scaffold315 GLEAN mRNA 444438 444490 0.999057 + . ID=CGI_10020426; scaffold315 TRF Tandem_Repeat 444438 444490 106 + . . scaffold315 GLEAN mRNA 444925 445227 0.999057 + . ID=CGI_10020426; scaffold315 TRF Tandem_Repeat 444925 445227 457 + . . scaffold315 GLEAN mRNA 444925 445324 0.999057 + . ID=CGI_10020426; scaffold315 TRF Tandem_Repeat 444925 445324 510 + . . scaffold315 GLEAN mRNA 444438 444490 0.999027 - . ID=CGI_10020427; scaffold315 TRF Tandem_Repeat 444438 444490 106 + . . scaffold315 GLEAN mRNA 444925 445227 0.999027 - . ID=CGI_10020427; scaffold315 TRF Tandem_Repeat 444925 445227 457 + . . scaffold315 GLEAN mRNA 444925 445324 0.999027 - . ID=CGI_10020427; scaffold315 TRF Tandem_Repeat 444925 445324 510 + . . scaffold315 GLEAN mRNA 490693 490728 1 - . ID=CGI_10020431; scaffold315 TRF Tandem_Repeat 490693 490728 72 + . . scaffold315 GLEAN mRNA 504187 504326 0.999027 + . ID=CGI_10020433; scaffold315 TRF Tandem_Repeat 504187 504326 154 + . . scaffold315 GLEAN mRNA 505095 505387 0.999027 + . ID=CGI_10020433; scaffold315 TRF Tandem_Repeat 505095 505387 289 + . . scaffold315 GLEAN mRNA 505097 505399 0.999027 + . ID=CGI_10020433; scaffold315 TRF Tandem_Repeat 505097 505399 282 + . . scaffold315 GLEAN mRNA 506064 506323 0.999027 + . ID=CGI_10020433; scaffold315 TRF Tandem_Repeat 506064 506323 279 + . . scaffold315 GLEAN mRNA 506064 506323 0.999027 + . ID=CGI_10020433; scaffold315 TRF Tandem_Repeat 506064 506323 333 + . . scaffold315 GLEAN mRNA 506095 506325 0.999027 + . ID=CGI_10020433; scaffold315 TRF Tandem_Repeat 506095 506325 315 + . . scaffold315 GLEAN mRNA 512599 512640 0.999027 + . ID=CGI_10020433; scaffold315 TRF Tandem_Repeat 512599 512640 84 + . . scaffold315 GLEAN mRNA 512842 513004 0.999027 + . ID=CGI_10020433; scaffold315 TRF Tandem_Repeat 512842 513004 242 + . . scaffold315 GLEAN mRNA 508604 509698 0.999027 + . ID=CGI_10020433; scaffold315 WUBlastX LINE_RTE-X 508604 509698 46 - . . scaffold315 GLEAN mRNA 508607 509386 0.999027 + . ID=CGI_10020433; scaffold315 WUBlastX LINE_RTE-X 508607 509386 96 - . . scaffold315 GLEAN mRNA 521258 521295 1 + . ID=CGI_10020435; scaffold315 TRF Tandem_Repeat 521258 521295 76 + . . scaffold315 GLEAN mRNA 528811 528948 0.633695 + . ID=CGI_10020436; scaffold315 TRF Tandem_Repeat 528811 528948 80 + . . scaffold315 GLEAN mRNA 608820 609018 1 - . ID=CGI_10020442; scaffold315 TRF Tandem_Repeat 608820 609018 254 + . . scaffold315 GLEAN mRNA 606127 606544 1 - . ID=CGI_10020442; scaffold315 TRF Tandem_Repeat 606127 606544 455 + . . scaffold315 GLEAN mRNA 606141 606530 1 - . ID=CGI_10020442; scaffold315 TRF Tandem_Repeat 606141 606530 393 + . . scaffold315 GLEAN mRNA 606127 606544 1 - . ID=CGI_10020442; scaffold315 TRF Tandem_Repeat 606127 606544 489 + . . scaffold315 GLEAN mRNA 640212 640249 1 + . ID=CGI_10020446; scaffold315 TRF Tandem_Repeat 640212 640249 76 + . . scaffold315 GLEAN mRNA 642941 642979 1 + . ID=CGI_10020446; scaffold315 TRF Tandem_Repeat 642941 642979 69 + . . scaffold388 GLEAN mRNA 11996 12047 0.55746 - . ID=CGI_10020447; scaffold388 TRF Tandem_Repeat 11996 12047 72 + . . scaffold388 GLEAN mRNA 14744 14774 0.55746 - . ID=CGI_10020447; scaffold388 TRF Tandem_Repeat 14744 14774 53 + . . scaffold388 GLEAN mRNA 73178 73945 1 + . ID=CGI_10020454; scaffold388 TRF Tandem_Repeat 73178 73945 568 + . . scaffold388 GLEAN mRNA 99379 99852 0.99935 - . ID=CGI_10020455; scaffold388 TRF Tandem_Repeat 99379 99852 588 + . . scaffold388 GLEAN mRNA 99414 99847 0.99935 - . ID=CGI_10020455; scaffold388 TRF Tandem_Repeat 99414 99847 155 + . . scaffold388 GLEAN mRNA 99401 99734 0.99935 - . ID=CGI_10020455; scaffold388 TRF Tandem_Repeat 99401 99734 160 + . . scaffold388 GLEAN mRNA 102266 102931 0.99935 - . ID=CGI_10020455; scaffold388 TRF Tandem_Repeat 102266 102931 933 + . . scaffold388 GLEAN mRNA 113921 114720 1 + . ID=CGI_10020457; scaffold388 TRF Tandem_Repeat 113921 114720 1505 + . . scaffold388 GLEAN mRNA 128940 128992 0.99428 + . ID=CGI_10020460; scaffold388 TRF Tandem_Repeat 128940 128992 72 + . . scaffold388 GLEAN mRNA 187906 188435 1 - . ID=CGI_10020463; scaffold388 TRF Tandem_Repeat 187906 188435 627 + . . scaffold388 GLEAN mRNA 187906 188391 1 - . ID=CGI_10020463; scaffold388 TRF Tandem_Repeat 187906 188391 836 + . . scaffold388 GLEAN mRNA 187906 188391 1 - . ID=CGI_10020463; scaffold388 TRF Tandem_Repeat 187906 188391 836 + . . scaffold388 GLEAN mRNA 192747 192806 1 - . ID=CGI_10020463; scaffold388 TRF Tandem_Repeat 192747 192806 95 + . . scaffold388 GLEAN mRNA 205580 205651 0.620634 - . ID=CGI_10020464; scaffold388 TRF Tandem_Repeat 205580 205651 137 + . . scaffold388 GLEAN mRNA 212018 212078 0.996237 + . ID=CGI_10020465; scaffold388 TRF Tandem_Repeat 212018 212078 52 + . . scaffold388 GLEAN mRNA 215537 215584 0.996237 + . ID=CGI_10020465; scaffold388 TRF Tandem_Repeat 215537 215584 51 + . . scaffold388 GLEAN mRNA 221778 221834 0.996237 + . ID=CGI_10020465; scaffold388 TRF Tandem_Repeat 221778 221834 114 + . . scaffold388 GLEAN mRNA 220523 220732 0.996237 + . ID=CGI_10020465; scaffold388 WUBlastX LINE_RTE-X 220523 220732 34 - . . scaffold388 GLEAN mRNA 220613 220750 0.996237 + . ID=CGI_10020465; scaffold388 WUBlastX LINE_RTE-X 220613 220750 53 - . . scaffold388 GLEAN mRNA 220619 220732 0.996237 + . ID=CGI_10020465; scaffold388 WUBlastX LINE_RTE-X 220619 220732 55 - . . scaffold388 GLEAN mRNA 220523 220732 0.662264 - . ID=CGI_10020466; scaffold388 WUBlastX LINE_RTE-X 220523 220732 34 - . . scaffold388 GLEAN mRNA 220613 220750 0.662264 - . ID=CGI_10020466; scaffold388 WUBlastX LINE_RTE-X 220613 220750 53 - . . scaffold388 GLEAN mRNA 220619 220732 0.662264 - . ID=CGI_10020466; scaffold388 WUBlastX LINE_RTE-X 220619 220732 55 - . . scaffold388 GLEAN mRNA 269209 269250 0.999647 + . ID=CGI_10020472; scaffold388 TRF Tandem_Repeat 269209 269250 50 + . . scaffold388 GLEAN mRNA 279080 279139 0.999647 + . ID=CGI_10020472; scaffold388 WUBlastX DNA_Academ 279080 279139 28 + . . scaffold388 GLEAN mRNA 291157 291192 0.126469 - . ID=CGI_10020473; scaffold388 TRF Tandem_Repeat 291157 291192 72 + . . scaffold388 GLEAN mRNA 279080 279139 0.126469 - . ID=CGI_10020473; scaffold388 WUBlastX DNA_Academ 279080 279139 28 + . . scaffold388 GLEAN mRNA 323219 323262 0.126469 - . ID=CGI_10020473; scaffold388 TRF Tandem_Repeat 323219 323262 52 + . . scaffold388 GLEAN mRNA 339001 339070 0.933244 - . ID=CGI_10020474; scaffold388 TRF Tandem_Repeat 339001 339070 140 + . . scaffold388 GLEAN mRNA 339068 339100 0.933244 - . ID=CGI_10020474; scaffold388 TRF Tandem_Repeat 339068 339100 57 + . . scaffold388 GLEAN mRNA 347731 347764 0.933244 - . ID=CGI_10020474; scaffold388 TRF Tandem_Repeat 347731 347764 52 + . . scaffold388 GLEAN mRNA 377646 378543 0.933244 - . ID=CGI_10020474; scaffold388 TRF Tandem_Repeat 377646 378543 818 + . . scaffold388 GLEAN mRNA 378712 378754 0.933244 - . ID=CGI_10020474; scaffold388 TRF Tandem_Repeat 378712 378754 59 + . . scaffold388 GLEAN mRNA 389508 389532 0.933244 - . ID=CGI_10020474; scaffold388 TRF Tandem_Repeat 389508 389532 50 + . . scaffold388 GLEAN mRNA 401201 401251 0.933244 - . ID=CGI_10020474; scaffold388 TRF Tandem_Repeat 401201 401251 50 + . . scaffold388 GLEAN mRNA 401198 401253 0.933244 - . ID=CGI_10020474; scaffold388 TRF Tandem_Repeat 401198 401253 76 + . . scaffold388 GLEAN mRNA 376090 377026 0.933244 - . ID=CGI_10020474; scaffold388 TRF Tandem_Repeat 376090 377026 977 + . . scaffold388 GLEAN mRNA 564112 564175 0.999051 + . ID=CGI_10020479; scaffold388 TRF Tandem_Repeat 564112 564175 83 + . . scaffold388 GLEAN mRNA 564094 564194 0.999051 + . ID=CGI_10020479; scaffold388 TRF Tandem_Repeat 564094 564194 73 + . . scaffold388 GLEAN mRNA 564265 564294 0.999051 + . ID=CGI_10020479; scaffold388 TRF Tandem_Repeat 564265 564294 51 + . . scaffold388 GLEAN mRNA 564314 564343 0.999051 + . ID=CGI_10020479; scaffold388 TRF Tandem_Repeat 564314 564343 53 + . . scaffold388 GLEAN mRNA 566358 566431 0.999051 + . ID=CGI_10020479; scaffold388 TRF Tandem_Repeat 566358 566431 139 + . . scaffold388 GLEAN mRNA 568157 568423 0.999051 + . ID=CGI_10020479; scaffold388 TRF Tandem_Repeat 568157 568423 182 + . . scaffold388 GLEAN mRNA 568296 568553 0.999051 + . ID=CGI_10020479; scaffold388 TRF Tandem_Repeat 568296 568553 135 + . . scaffold580 GLEAN mRNA 58959 59010 0.650731 - . ID=CGI_10020485; scaffold580 TRF Tandem_Repeat 58959 59010 95 + . . scaffold580 GLEAN mRNA 65233 65275 0.650731 - . ID=CGI_10020485; scaffold580 TRF Tandem_Repeat 65233 65275 50 + . . scaffold580 GLEAN mRNA 69221 69276 0.650731 - . ID=CGI_10020485; scaffold580 TRF Tandem_Repeat 69221 69276 76 + . . scaffold580 GLEAN mRNA 69224 69276 0.650731 - . ID=CGI_10020485; scaffold580 TRF Tandem_Repeat 69224 69276 88 + . . scaffold580 GLEAN mRNA 70401 70452 0.650731 - . ID=CGI_10020485; scaffold580 TRF Tandem_Repeat 70401 70452 104 + . . scaffold580 GLEAN mRNA 77394 77455 0.650731 - . ID=CGI_10020485; scaffold580 TRF Tandem_Repeat 77394 77455 115 + . . scaffold580 GLEAN mRNA 85963 85999 0.999994 - . ID=CGI_10020487; scaffold580 TRF Tandem_Repeat 85963 85999 74 + . . scaffold580 GLEAN mRNA 244110 244153 1 + . ID=CGI_10020492; scaffold580 TRF Tandem_Repeat 244110 244153 79 + . . scaffold580 GLEAN mRNA 290946 291149 0.998445 + . ID=CGI_10020496; scaffold580 TRF Tandem_Repeat 290946 291149 273 + . . scaffold580 GLEAN mRNA 292660 292780 0.998445 + . ID=CGI_10020496; scaffold580 TRF Tandem_Repeat 292660 292780 107 + . . scaffold580 GLEAN mRNA 292724 293220 0.998445 + . ID=CGI_10020496; scaffold580 TRF Tandem_Repeat 292724 293220 363 + . . scaffold580 GLEAN mRNA 292724 293194 0.998445 + . ID=CGI_10020496; scaffold580 TRF Tandem_Repeat 292724 293194 371 + . . scaffold580 GLEAN mRNA 299301 299355 0.998445 + . ID=CGI_10020496; scaffold580 TRF Tandem_Repeat 299301 299355 110 + . . scaffold580 GLEAN mRNA 301788 301816 0.998445 + . ID=CGI_10020496; scaffold580 TRF Tandem_Repeat 301788 301816 58 + . . scaffold580 GLEAN mRNA 313611 314613 0.998445 + . ID=CGI_10020496; scaffold580 TRF Tandem_Repeat 313611 314613 1375 + . . scaffold580 GLEAN mRNA 314784 314822 0.998445 + . ID=CGI_10020496; scaffold580 TRF Tandem_Repeat 314784 314822 60 + . . scaffold580 GLEAN mRNA 290946 291149 1 - . ID=CGI_10020497; scaffold580 TRF Tandem_Repeat 290946 291149 273 + . . scaffold580 GLEAN mRNA 292660 292780 1 - . ID=CGI_10020497; scaffold580 TRF Tandem_Repeat 292660 292780 107 + . . scaffold580 GLEAN mRNA 292724 293220 1 - . ID=CGI_10020497; scaffold580 TRF Tandem_Repeat 292724 293220 363 + . . scaffold580 GLEAN mRNA 292724 293194 1 - . ID=CGI_10020497; scaffold580 TRF Tandem_Repeat 292724 293194 371 + . . scaffold580 GLEAN mRNA 319615 319661 0.999103 + . ID=CGI_10020498; scaffold580 TRF Tandem_Repeat 319615 319661 94 + . . scaffold580 GLEAN mRNA 322040 322085 0.999103 + . ID=CGI_10020498; scaffold580 TRF Tandem_Repeat 322040 322085 92 + . . scaffold580 GLEAN mRNA 329888 329949 0.999984 + . ID=CGI_10020499; scaffold580 TRF Tandem_Repeat 329888 329949 124 + . . scaffold580 GLEAN mRNA 339831 339928 0.999415 - . ID=CGI_10020500; scaffold580 TRF Tandem_Repeat 339831 339928 127 + . . scaffold580 GLEAN mRNA 346094 346151 0.999415 - . ID=CGI_10020500; scaffold580 TRF Tandem_Repeat 346094 346151 53 + . . scaffold580 GLEAN mRNA 346095 346163 0.999415 - . ID=CGI_10020500; scaffold580 TRF Tandem_Repeat 346095 346163 54 + . . scaffold580 GLEAN mRNA 346103 346151 0.999415 - . ID=CGI_10020500; scaffold580 TRF Tandem_Repeat 346103 346151 64 + . . scaffold580 GLEAN mRNA 411121 411491 1 - . ID=CGI_10020504; scaffold580 TRF Tandem_Repeat 411121 411491 598 + . . scaffold580 GLEAN mRNA 413518 413774 1 - . ID=CGI_10020504; scaffold580 TRF Tandem_Repeat 413518 413774 250 + . . scaffold580 GLEAN mRNA 416425 416481 1 - . ID=CGI_10020504; scaffold580 TRF Tandem_Repeat 416425 416481 114 + . . scaffold580 GLEAN mRNA 428955 429665 1 - . ID=CGI_10020505; scaffold580 TRF Tandem_Repeat 428955 429665 723 + . . scaffold580 GLEAN mRNA 430904 430977 1 - . ID=CGI_10020505; scaffold580 TRF Tandem_Repeat 430904 430977 141 + . . scaffold580 GLEAN mRNA 433429 433470 1 - . ID=CGI_10020505; scaffold580 TRF Tandem_Repeat 433429 433470 59 + . . scaffold580 GLEAN mRNA 435220 436065 1 - . ID=CGI_10020505; scaffold580 TRF Tandem_Repeat 435220 436065 1131 + . . scaffold580 GLEAN mRNA 494381 494566 0.925199 - . ID=CGI_10020510; scaffold580 TRF Tandem_Repeat 494381 494566 223 + . . scaffold580 GLEAN mRNA 497977 498750 0.925199 - . ID=CGI_10020510; scaffold580 TRF Tandem_Repeat 497977 498750 1047 + . . scaffold580 GLEAN mRNA 499046 499431 0.925199 - . ID=CGI_10020510; scaffold580 TRF Tandem_Repeat 499046 499431 106 + . . scaffold580 GLEAN mRNA 499243 499419 0.925199 - . ID=CGI_10020510; scaffold580 TRF Tandem_Repeat 499243 499419 116 + . . scaffold580 GLEAN mRNA 499294 499367 0.925199 - . ID=CGI_10020510; scaffold580 TRF Tandem_Repeat 499294 499367 60 + . . scaffold580 GLEAN mRNA 499242 499396 0.925199 - . ID=CGI_10020510; scaffold580 TRF Tandem_Repeat 499242 499396 93 + . . scaffold580 GLEAN mRNA 499298 499366 0.925199 - . ID=CGI_10020510; scaffold580 TRF Tandem_Repeat 499298 499366 52 + . . scaffold580 GLEAN mRNA 499285 499433 0.925199 - . ID=CGI_10020510; scaffold580 TRF Tandem_Repeat 499285 499433 89 + . . scaffold580 GLEAN mRNA 494381 494566 1 + . ID=CGI_10020511; scaffold580 TRF Tandem_Repeat 494381 494566 223 + . . scaffold580 GLEAN mRNA 497977 498750 1 + . ID=CGI_10020511; scaffold580 TRF Tandem_Repeat 497977 498750 1047 + . . scaffold580 GLEAN mRNA 499046 499431 1 + . ID=CGI_10020511; scaffold580 TRF Tandem_Repeat 499046 499431 106 + . . scaffold580 GLEAN mRNA 499243 499419 1 + . ID=CGI_10020511; scaffold580 TRF Tandem_Repeat 499243 499419 116 + . . scaffold580 GLEAN mRNA 499294 499367 1 + . ID=CGI_10020511; scaffold580 TRF Tandem_Repeat 499294 499367 60 + . . scaffold580 GLEAN mRNA 499242 499396 1 + . ID=CGI_10020511; scaffold580 TRF Tandem_Repeat 499242 499396 93 + . . scaffold580 GLEAN mRNA 499298 499366 1 + . ID=CGI_10020511; scaffold580 TRF Tandem_Repeat 499298 499366 52 + . . scaffold580 GLEAN mRNA 499285 499433 1 + . ID=CGI_10020511; scaffold580 TRF Tandem_Repeat 499285 499433 89 + . . scaffold580 GLEAN mRNA 536644 536705 0.999377 + . ID=CGI_10020515; scaffold580 TRF Tandem_Repeat 536644 536705 115 + . . scaffold580 GLEAN mRNA 540907 540978 0.999377 + . ID=CGI_10020515; scaffold580 TRF Tandem_Repeat 540907 540978 54 + . . scaffold580 GLEAN mRNA 542997 543254 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Pao 542997 543254 69 - . . scaffold580 GLEAN mRNA 543949 544257 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Pao 543949 544257 53 - . . scaffold580 GLEAN mRNA 543623 543979 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Pao 543623 543979 39 - . . scaffold580 GLEAN mRNA 544096 544257 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Pao 544096 544257 63 - . . scaffold580 GLEAN mRNA 545532 546152 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Gypsy-Troyk 545532 546152 234 + . . scaffold580 GLEAN mRNA 543245 543373 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Pao 543245 543373 59 - . . scaffold580 GLEAN mRNA 542911 543000 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Pao 542911 543000 53 - . . scaffold580 GLEAN mRNA 542997 543143 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Pao 542997 543143 80 - . . scaffold580 GLEAN mRNA 547518 547784 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Gypsy-Troyk 547518 547784 72 + . . scaffold580 GLEAN mRNA 545642 547507 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Gypsy-Troyk 545642 547507 1229 + . . scaffold580 GLEAN mRNA 547530 547856 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Gypsy-Troyk 547530 547856 32 + . . scaffold580 GLEAN mRNA 543245 543409 0.999377 + . ID=CGI_10020515; scaffold580 WUBlastX LTR_Pao 543245 543409 34 - . . scaffold580 GLEAN mRNA 549386 549979 0.999676 + . ID=CGI_10020516; scaffold580 WUBlastX DNA_Harbinger 549386 549979 224 + . . scaffold580 GLEAN mRNA 549245 549868 0.999676 + . ID=CGI_10020516; scaffold580 WUBlastX DNA_Harbinger 549245 549868 58 + . . scaffold580 GLEAN mRNA 580633 580673 0.999676 - . ID=CGI_10020520; scaffold580 TRF Tandem_Repeat 580633 580673 57 + . . scaffold580 GLEAN mRNA 586316 586362 0.999415 - . ID=CGI_10020521; scaffold580 TRF Tandem_Repeat 586316 586362 94 + . . scaffold580 GLEAN mRNA 614757 614805 1 + . ID=CGI_10020524; scaffold580 TRF Tandem_Repeat 614757 614805 98 + . . scaffold580 GLEAN mRNA 623190 623293 0.544852 - . ID=CGI_10020525; scaffold580 TRF Tandem_Repeat 623190 623293 163 + . . scaffold580 GLEAN mRNA 637521 637573 0.999206 - . ID=CGI_10020526; scaffold580 TRF Tandem_Repeat 637521 637573 97 + . . scaffold580 GLEAN mRNA 642207 642254 0.999206 - . ID=CGI_10020526; scaffold580 TRF Tandem_Repeat 642207 642254 96 + . . scaffold580 GLEAN mRNA 646574 646610 0.999206 - . ID=CGI_10020526; scaffold580 TRF Tandem_Repeat 646574 646610 74 + . . scaffold580 GLEAN mRNA 648450 648626 0.999206 - . ID=CGI_10020526; scaffold580 TRF Tandem_Repeat 648450 648626 174 + . . scaffold580 GLEAN mRNA 648654 648817 0.999206 - . ID=CGI_10020526; scaffold580 TRF Tandem_Repeat 648654 648817 193 + . . scaffold580 GLEAN mRNA 648902 648988 0.999206 - . ID=CGI_10020526; scaffold580 TRF Tandem_Repeat 648902 648988 122 + . . scaffold57 GLEAN mRNA 4656 4701 0.810616 + . ID=CGI_10020530; scaffold57 TRF Tandem_Repeat 4656 4701 92 + . . scaffold57 GLEAN mRNA 3861 4088 0.810616 + . ID=CGI_10020530; scaffold57 WUBlastX DNA_En-Spm 3861 4088 68 + . . scaffold57 GLEAN mRNA 4291 4383 0.810616 + . ID=CGI_10020530; scaffold57 WUBlastX DNA_En-Spm 4291 4383 32 + . . scaffold57 GLEAN mRNA 4389 5024 0.810616 + . ID=CGI_10020530; scaffold57 WUBlastX DNA_En-Spm 4389 5024 58 + . . scaffold57 GLEAN mRNA 3801 4085 0.810616 + . ID=CGI_10020530; scaffold57 WUBlastX DNA_En-Spm 3801 4085 20 + . . scaffold57 GLEAN mRNA 4371 4835 0.810616 + . ID=CGI_10020530; scaffold57 WUBlastX DNA_En-Spm 4371 4835 130 + . . scaffold57 GLEAN mRNA 59666 59938 0.999999 - . ID=CGI_10020536; scaffold57 WUBlastX DNA_TcMar-Tc1 59666 59938 71 - . . scaffold57 GLEAN mRNA 59588 59899 0.999999 - . ID=CGI_10020536; scaffold57 WUBlastX DNA_TcMar-Tc1 59588 59899 59 - . . scaffold57 GLEAN mRNA 68470 68499 0.999676 + . ID=CGI_10020537; scaffold57 TRF Tandem_Repeat 68470 68499 60 + . . scaffold57 GLEAN mRNA 74896 75382 0.811123 - . ID=CGI_10020538; scaffold57 TRF Tandem_Repeat 74896 75382 218 + . . scaffold57 GLEAN mRNA 75116 75584 0.811123 - . ID=CGI_10020538; scaffold57 TRF Tandem_Repeat 75116 75584 406 + . . scaffold57 GLEAN mRNA 74895 75584 0.811123 - . ID=CGI_10020538; scaffold57 TRF Tandem_Repeat 74895 75584 465 + . . scaffold57 GLEAN mRNA 75407 75584 0.811123 - . ID=CGI_10020538; scaffold57 TRF Tandem_Repeat 75407 75584 223 + . . scaffold57 GLEAN mRNA 78565 79160 0.811123 - . ID=CGI_10020538; scaffold57 TRF Tandem_Repeat 78565 79160 721 + . . scaffold57 GLEAN mRNA 78565 79335 0.811123 - . ID=CGI_10020538; scaffold57 TRF Tandem_Repeat 78565 79335 735 + . . scaffold57 GLEAN mRNA 110449 112068 0.364313 + . ID=CGI_10020539; scaffold57 TRF Tandem_Repeat 110449 112068 2286 + . . scaffold57 GLEAN mRNA 120987 121081 0.6557 + . ID=CGI_10020540; scaffold57 TRF Tandem_Repeat 120987 121081 66 + . . scaffold57 GLEAN mRNA 123098 123994 0.6557 + . ID=CGI_10020540; scaffold57 TRF Tandem_Repeat 123098 123994 995 + . . scaffold57 GLEAN mRNA 170271 170320 0.998703 - . ID=CGI_10020544; scaffold57 TRF Tandem_Repeat 170271 170320 100 + . . scaffold57 GLEAN mRNA 182026 182578 0.998703 - . ID=CGI_10020544; scaffold57 TRF Tandem_Repeat 182026 182578 681 + . . scaffold57 GLEAN mRNA 182026 182578 0.533671 + . ID=CGI_10020545; scaffold57 TRF Tandem_Repeat 182026 182578 681 + . . scaffold57 GLEAN mRNA 193093 193139 0.533671 + . ID=CGI_10020545; scaffold57 TRF Tandem_Repeat 193093 193139 67 + . . scaffold57 GLEAN mRNA 193093 193146 0.533671 + . ID=CGI_10020545; scaffold57 TRF Tandem_Repeat 193093 193146 63 + . . scaffold57 GLEAN mRNA 192277 192561 0.533671 + . ID=CGI_10020545; scaffold57 WUBlastX LINE_RTE-X 192277 192561 65 - . . scaffold57 GLEAN mRNA 191992 192315 0.533671 + . ID=CGI_10020545; scaffold57 WUBlastX LINE_RTE-X 191992 192315 44 - . . scaffold57 GLEAN mRNA 192124 192510 0.533671 + . ID=CGI_10020545; scaffold57 WUBlastX LINE_RTE-X 192124 192510 142 - . . scaffold57 GLEAN mRNA 209591 210064 0.533671 + . ID=CGI_10020545; scaffold57 WUBlastX LINE_RTE-X 209591 210064 280 - . . scaffold57 GLEAN mRNA 205773 206186 0.533671 + . ID=CGI_10020545; scaffold57 WUBlastX LINE_RTE-X 205773 206186 178 - . . scaffold57 GLEAN mRNA 205860 206249 0.533671 + . ID=CGI_10020545; scaffold57 WUBlastX LINE_RTE-X 205860 206249 128 - . . scaffold57 GLEAN mRNA 209555 210142 0.533671 + . ID=CGI_10020545; scaffold57 WUBlastX LINE_RTE-X 209555 210142 166 - . . scaffold57 GLEAN mRNA 247591 247966 0.991802 - . ID=CGI_10020547; scaffold57 TRF Tandem_Repeat 247591 247966 626 + . . scaffold57 GLEAN mRNA 254477 254532 0.780178 - . ID=CGI_10020548; scaffold57 TRF Tandem_Repeat 254477 254532 103 + . . scaffold57 GLEAN mRNA 258540 258577 0.780178 - . ID=CGI_10020548; scaffold57 TRF Tandem_Repeat 258540 258577 69 + . . scaffold57 GLEAN mRNA 270375 270404 0.780178 - . ID=CGI_10020548; scaffold57 TRF Tandem_Repeat 270375 270404 51 + . . scaffold57 GLEAN mRNA 280614 280673 0.780178 - . ID=CGI_10020548; scaffold57 TRF Tandem_Repeat 280614 280673 120 + . . scaffold57 GLEAN mRNA 280770 280799 0.780178 - . ID=CGI_10020548; scaffold57 TRF Tandem_Repeat 280770 280799 60 + . . scaffold57 GLEAN mRNA 290539 290626 1 - . ID=CGI_10020549; scaffold57 TRF Tandem_Repeat 290539 290626 160 + . . scaffold57 GLEAN mRNA 292959 293018 1 - . ID=CGI_10020549; scaffold57 TRF Tandem_Repeat 292959 293018 111 + . . scaffold57 GLEAN mRNA 293036 293167 1 - . ID=CGI_10020549; scaffold57 WUBlastX DNA_hAT 293036 293167 68 - . . scaffold57 GLEAN mRNA 292608 292799 1 - . ID=CGI_10020549; scaffold57 WUBlastX DNA_hAT 292608 292799 104 - . . scaffold57 GLEAN mRNA 291582 291908 1 - . ID=CGI_10020549; scaffold57 WUBlastX DNA_hAT 291582 291908 120 - . . scaffold57 GLEAN mRNA 292578 292751 1 - . ID=CGI_10020549; scaffold57 WUBlastX DNA_hAT 292578 292751 98 - . . scaffold57 GLEAN mRNA 291531 291824 1 - . ID=CGI_10020549; scaffold57 WUBlastX DNA_hAT 291531 291824 150 - . . scaffold57 GLEAN mRNA 293606 294391 1 - . ID=CGI_10020549; scaffold57 WUBlastX DNA_hAT 293606 294529 499 - . . scaffold57 GLEAN mRNA 293537 293683 1 - . ID=CGI_10020549; scaffold57 WUBlastX DNA_hAT 293537 293683 26 - . . scaffold57 GLEAN mRNA 300076 300142 1 + . ID=CGI_10020550; scaffold57 TRF Tandem_Repeat 300076 300142 134 + . . scaffold57 GLEAN mRNA 300174 300200 1 + . ID=CGI_10020550; scaffold57 TRF Tandem_Repeat 300174 300200 54 + . . scaffold57 GLEAN mRNA 297789 298679 1 + . ID=CGI_10020550; scaffold57 WUBlastX DNA_hAT 297789 298679 436 + . . scaffold57 GLEAN mRNA 299319 299462 1 + . ID=CGI_10020550; scaffold57 WUBlastX DNA_hAT 299319 299462 90 + . . scaffold57 GLEAN mRNA 299872 300048 1 + . ID=CGI_10020550; scaffold57 WUBlastX DNA_hAT 299872 300048 103 + . . scaffold57 GLEAN mRNA 300416 301078 1 + . ID=CGI_10020550; scaffold57 WUBlastX DNA_hAT 300416 301078 127 + . . scaffold57 GLEAN mRNA 300410 300712 1 + . ID=CGI_10020550; scaffold57 WUBlastX DNA_hAT 300410 300712 136 + . . scaffold57 GLEAN mRNA 329387 329718 0.705627 - . ID=CGI_10020551; scaffold57 TRF Tandem_Repeat 329387 329718 587 + . . scaffold57 GLEAN mRNA 331675 331711 0.705627 - . ID=CGI_10020551; scaffold57 TRF Tandem_Repeat 331675 331711 74 + . . scaffold57 GLEAN mRNA 375484 376145 0.943475 + . ID=CGI_10020552; scaffold57 TRF Tandem_Repeat 375484 376145 718 + . . scaffold57 GLEAN mRNA 377038 377103 0.943475 + . ID=CGI_10020552; scaffold57 TRF Tandem_Repeat 377038 377103 107 + . . scaffold57 GLEAN mRNA 377039 377100 0.943475 + . ID=CGI_10020552; scaffold57 TRF Tandem_Repeat 377039 377100 81 + . . scaffold57 GLEAN mRNA 379412 379807 0.943475 + . ID=CGI_10020552; scaffold57 WUBlastX LINE_L2 379412 379807 48 - . . scaffold57 GLEAN mRNA 378097 379374 0.943475 + . ID=CGI_10020552; scaffold57 WUBlastX LINE_RTE-X 378097 379374 475 - . . scaffold57 GLEAN mRNA 379406 379696 0.943475 + . ID=CGI_10020552; scaffold57 WUBlastX LINE_RTE-X 379406 379696 221 - . . scaffold57 GLEAN mRNA 379418 379747 0.943475 + . ID=CGI_10020552; scaffold57 WUBlastX LINE_CR1 379418 379747 55 - . . scaffold57 GLEAN mRNA 375484 376145 0.322076 - . ID=CGI_10020553; scaffold57 TRF Tandem_Repeat 375484 376145 718 + . . scaffold57 GLEAN mRNA 377038 377103 0.322076 - . ID=CGI_10020553; scaffold57 TRF Tandem_Repeat 377038 377103 107 + . . scaffold57 GLEAN mRNA 377039 377100 0.322076 - . ID=CGI_10020553; scaffold57 TRF Tandem_Repeat 377039 377100 81 + . . scaffold57 GLEAN mRNA 383328 383657 0.322076 - . ID=CGI_10020553; scaffold57 TRF Tandem_Repeat 383328 383657 412 + . . scaffold57 GLEAN mRNA 384539 385379 0.322076 - . ID=CGI_10020553; scaffold57 TRF Tandem_Repeat 384539 385379 441 + . . scaffold57 GLEAN mRNA 384539 385378 0.322076 - . ID=CGI_10020553; scaffold57 TRF Tandem_Repeat 384539 385378 667 + . . scaffold57 GLEAN mRNA 384539 385383 0.322076 - . ID=CGI_10020553; scaffold57 TRF Tandem_Repeat 384539 385383 698 + . . scaffold57 GLEAN mRNA 379412 379807 0.322076 - . ID=CGI_10020553; scaffold57 WUBlastX LINE_L2 379412 379807 48 - . . scaffold57 GLEAN mRNA 378097 379374 0.322076 - . ID=CGI_10020553; scaffold57 WUBlastX LINE_RTE-X 378097 379374 475 - . . scaffold57 GLEAN mRNA 379406 379696 0.322076 - . ID=CGI_10020553; scaffold57 WUBlastX LINE_RTE-X 379406 379696 221 - . . scaffold57 GLEAN mRNA 379418 379747 0.322076 - . ID=CGI_10020553; scaffold57 WUBlastX LINE_CR1 379418 379747 55 - . . scaffold57 GLEAN mRNA 422091 422226 0.999221 - . ID=CGI_10020557; scaffold57 TRF Tandem_Repeat 422091 422226 154 + . . scaffold57 GLEAN mRNA 422455 422496 0.999221 - . ID=CGI_10020557; scaffold57 TRF Tandem_Repeat 422455 422496 84 + . . scaffold57 GLEAN mRNA 423085 423122 0.999221 - . ID=CGI_10020557; scaffold57 TRF Tandem_Repeat 423085 423122 76 + . . scaffold57 GLEAN mRNA 423368 423443 0.999221 - . ID=CGI_10020557; scaffold57 TRF Tandem_Repeat 423368 423443 93 + . . scaffold57 GLEAN mRNA 445055 445121 1 + . ID=CGI_10020561; scaffold57 TRF Tandem_Repeat 445055 445121 134 + . . scaffold57 GLEAN mRNA 450682 450707 1 + . ID=CGI_10020561; scaffold57 TRF Tandem_Repeat 450682 450707 52 + . . scaffold57 GLEAN mRNA 446300 446407 1 + . ID=CGI_10020561; scaffold57 WUBlastX LINE_RTE-BovB 446300 446407 56 - . . scaffold57 GLEAN mRNA 445811 445909 1 + . ID=CGI_10020561; scaffold57 WUBlastX LINE_RTE-BovB 445811 445909 45 - . . scaffold57 GLEAN mRNA 446209 446307 1 + . ID=CGI_10020561; scaffold57 WUBlastX LINE_RTE-BovB 446209 446307 45 - . . scaffold57 GLEAN mRNA 445899 446036 1 + . ID=CGI_10020561; scaffold57 WUBlastX LINE_RTE-BovB 445899 446036 47 - . . scaffold57 GLEAN mRNA 445911 446015 1 + . ID=CGI_10020561; scaffold57 WUBlastX LINE_RTE-BovB 445911 446015 54 - . . scaffold57 GLEAN mRNA 460392 460639 0.999222 - . ID=CGI_10020562; scaffold57 TRF Tandem_Repeat 460392 460639 225 + . . scaffold57 GLEAN mRNA 462168 462442 0.999222 - . ID=CGI_10020562; scaffold57 TRF Tandem_Repeat 462168 462442 306 + . . scaffold57 GLEAN mRNA 463299 463610 0.999222 - . ID=CGI_10020562; scaffold57 TRF Tandem_Repeat 463299 463610 282 + . . scaffold57 GLEAN mRNA 463303 463610 0.999222 - . ID=CGI_10020562; scaffold57 TRF Tandem_Repeat 463303 463610 128 + . . scaffold57 GLEAN mRNA 464522 464868 0.999222 - . ID=CGI_10020562; scaffold57 TRF Tandem_Repeat 464522 464868 626 + . . scaffold57 GLEAN mRNA 493522 493578 0.689419 + . ID=CGI_10020563; scaffold57 TRF Tandem_Repeat 493522 493578 71 + . . scaffold57 GLEAN mRNA 493521 493578 0.689419 + . ID=CGI_10020563; scaffold57 TRF Tandem_Repeat 493521 493578 55 + . . scaffold57 GLEAN mRNA 533396 533421 0.990029 + . ID=CGI_10020565; scaffold57 TRF Tandem_Repeat 533396 533421 52 + . . scaffold57 GLEAN mRNA 540021 540058 0.990029 + . ID=CGI_10020565; scaffold57 TRF Tandem_Repeat 540021 540058 76 + . . scaffold160 GLEAN mRNA 72495 72965 0.999937 + . ID=CGI_10020572; scaffold160 TRF Tandem_Repeat 72495 72965 378 + . . scaffold160 GLEAN mRNA 74820 75030 0.999937 + . ID=CGI_10020572; scaffold160 TRF Tandem_Repeat 74820 75030 145 + . . scaffold160 GLEAN mRNA 75254 75558 0.999937 + . ID=CGI_10020572; scaffold160 TRF Tandem_Repeat 75254 75558 243 + . . scaffold160 GLEAN mRNA 183234 183444 0.919015 - . ID=CGI_10020578; scaffold160 TRF Tandem_Repeat 183234 183444 171 + . . scaffold160 GLEAN mRNA 187716 188057 0.919015 - . ID=CGI_10020578; scaffold160 TRF Tandem_Repeat 187716 188057 395 + . . scaffold160 GLEAN mRNA 180788 181768 0.919015 - . ID=CGI_10020578; scaffold160 WUBlastX LINE_RTE-X 180788 181768 214 - . . scaffold160 GLEAN mRNA 180566 181765 0.919015 - . ID=CGI_10020578; scaffold160 WUBlastX LINE_RTE-X 180566 181765 173 - . . scaffold160 GLEAN mRNA 204454 204495 0.919015 - . ID=CGI_10020578; scaffold160 TRF Tandem_Repeat 204454 204495 59 + . . scaffold160 GLEAN mRNA 204454 204496 0.919015 - . ID=CGI_10020578; scaffold160 TRF Tandem_Repeat 204454 204496 63 + . . scaffold160 GLEAN mRNA 211413 211468 0.981726 - . ID=CGI_10020579; scaffold160 TRF Tandem_Repeat 211413 211468 112 + . . scaffold160 GLEAN mRNA 213303 213731 0.981726 - . ID=CGI_10020579; scaffold160 TRF Tandem_Repeat 213303 213731 334 + . . scaffold160 GLEAN mRNA 213303 213731 0.981726 - . ID=CGI_10020579; scaffold160 TRF Tandem_Repeat 213303 213731 347 + . . scaffold160 GLEAN mRNA 215871 215951 0.981726 - . ID=CGI_10020579; scaffold160 TRF Tandem_Repeat 215871 215951 81 + . . scaffold160 GLEAN mRNA 215872 215951 0.981726 - . ID=CGI_10020579; scaffold160 TRF Tandem_Repeat 215872 215951 78 + . . scaffold160 GLEAN mRNA 216012 216078 0.981726 - . ID=CGI_10020579; scaffold160 TRF Tandem_Repeat 216012 216078 134 + . . scaffold160 GLEAN mRNA 220530 220631 0.981726 - . ID=CGI_10020579; scaffold160 TRF Tandem_Repeat 220530 220631 145 + . . scaffold160 GLEAN mRNA 220527 220633 0.981726 - . ID=CGI_10020579; scaffold160 TRF Tandem_Repeat 220527 220633 137 + . . scaffold160 GLEAN mRNA 225051 225914 0.981726 - . ID=CGI_10020579; scaffold160 TRF Tandem_Repeat 225051 225914 186 + . . scaffold160 GLEAN mRNA 225499 225605 0.981726 - . ID=CGI_10020579; scaffold160 TRF Tandem_Repeat 225499 225605 94 + . . scaffold160 GLEAN mRNA 225498 225913 0.981726 - . ID=CGI_10020579; scaffold160 TRF Tandem_Repeat 225498 225913 240 + . . scaffold160 GLEAN mRNA 225405 225915 0.981726 - . ID=CGI_10020579; scaffold160 TRF Tandem_Repeat 225405 225915 306 + . . scaffold160 GLEAN mRNA 226565 226621 0.981726 - . ID=CGI_10020579; scaffold160 TRF Tandem_Repeat 226565 226621 105 + . . scaffold160 GLEAN mRNA 246956 247285 0.993906 - . ID=CGI_10020581; scaffold160 TRF Tandem_Repeat 246956 247285 597 + . . scaffold160 GLEAN mRNA 258020 258196 0.993906 - . ID=CGI_10020581; scaffold160 TRF Tandem_Repeat 258020 258196 336 + . . scaffold160 GLEAN mRNA 258780 258915 0.993906 - . ID=CGI_10020581; scaffold160 TRF Tandem_Repeat 258780 258915 202 + . . scaffold160 GLEAN mRNA 266565 266594 0.998724 + . ID=CGI_10020582; scaffold160 TRF Tandem_Repeat 266565 266594 53 + . . scaffold160 GLEAN mRNA 272407 272445 0.998724 + . ID=CGI_10020582; scaffold160 TRF Tandem_Repeat 272407 272445 60 + . . scaffold160 GLEAN mRNA 273519 273814 0.998724 + . ID=CGI_10020582; scaffold160 TRF Tandem_Repeat 273519 273814 441 + . . scaffold160 GLEAN mRNA 273519 274262 0.998724 + . ID=CGI_10020582; scaffold160 TRF Tandem_Repeat 273519 274262 463 + . . scaffold160 GLEAN mRNA 273736 274844 0.998724 + . ID=CGI_10020582; scaffold160 TRF Tandem_Repeat 273736 274844 1656 + . . scaffold160 GLEAN mRNA 273790 274052 0.998724 + . ID=CGI_10020582; scaffold160 TRF Tandem_Repeat 273790 274052 89 + . . scaffold160 GLEAN mRNA 274028 274262 0.998724 + . ID=CGI_10020582; scaffold160 TRF Tandem_Repeat 274028 274262 389 + . . scaffold160 GLEAN mRNA 274238 274719 0.998724 + . ID=CGI_10020582; scaffold160 TRF Tandem_Repeat 274238 274719 106 + . . scaffold160 GLEAN mRNA 274768 275033 0.998724 + . ID=CGI_10020582; scaffold160 TRF Tandem_Repeat 274768 275033 435 + . . scaffold160 GLEAN mRNA 320231 320659 0.628364 - . ID=CGI_10020588; scaffold160 WUBlastX LTR_Pao 320231 320659 64 - . . scaffold160 GLEAN mRNA 319662 319751 0.628364 - . ID=CGI_10020588; scaffold160 WUBlastX LTR_Pao 319662 319751 20 - . . scaffold160 GLEAN mRNA 320309 320683 0.628364 - . ID=CGI_10020588; scaffold160 WUBlastX LTR_Pao 320309 320683 107 - . . scaffold160 GLEAN mRNA 342125 342184 1 + . ID=CGI_10020592; scaffold160 TRF Tandem_Repeat 342125 342184 120 + . . scaffold160 GLEAN mRNA 343377 343427 1 + . ID=CGI_10020592; scaffold160 TRF Tandem_Repeat 343377 343427 84 + . . scaffold160 GLEAN mRNA 342487 342738 1 + . ID=CGI_10020592; scaffold160 WUBlastX LINE_RTE-X 342487 342738 52 + . . scaffold160 GLEAN mRNA 342532 342738 1 + . ID=CGI_10020592; scaffold160 WUBlastX LINE_RTE-X 342532 342738 66 + . . scaffold160 GLEAN mRNA 343438 344273 1 + . ID=CGI_10020592; scaffold160 TRF Tandem_Repeat 343438 344273 1160 + . . scaffold160 GLEAN mRNA 366776 366984 1 - . ID=CGI_10020595; scaffold160 TRF Tandem_Repeat 366776 366984 168 + . . scaffold160 GLEAN mRNA 447824 447887 0.875344 - . ID=CGI_10020602; scaffold160 TRF Tandem_Repeat 447824 447887 64 + . . scaffold160 GLEAN mRNA 447861 448027 0.875344 - . ID=CGI_10020602; scaffold160 TRF Tandem_Repeat 447861 448027 152 + . . scaffold160 GLEAN mRNA 448922 449123 0.875344 - . ID=CGI_10020602; scaffold160 TRF Tandem_Repeat 448922 449123 165 + . . scaffold160 GLEAN mRNA 500122 500159 0.994424 + . ID=CGI_10020604; scaffold160 WUBlastX DNA_Crypton 500122 500556 53 + . . scaffold160 GLEAN mRNA 499509 500123 0.994424 + . ID=CGI_10020604; scaffold160 WUBlastX DNA_Crypton 499509 500123 150 + . . scaffold160 GLEAN mRNA 523852 523983 0.85871 - . ID=CGI_10020606; scaffold160 WUBlastX DNA_hAT-Tip100 523852 523983 50 - . . scaffold160 GLEAN mRNA 523789 523983 0.85871 - . ID=CGI_10020606; scaffold160 WUBlastX DNA_hAT-Tip100 523789 523983 38 - . . scaffold160 GLEAN mRNA 529164 530129 0.85871 - . ID=CGI_10020606; scaffold160 WUBlastX LINE_L1-Tx1 529164 530129 405 + . . scaffold160 GLEAN mRNA 528035 529153 0.85871 - . ID=CGI_10020606; scaffold160 WUBlastX LINE_L1-Tx1 528035 529153 426 + . . scaffold160 GLEAN mRNA 524212 524298 0.85871 - . ID=CGI_10020606; scaffold160 WUBlastX DNA_hAT-Tip100 524212 524298 24 - . . scaffold410 GLEAN mRNA 81608 81648 0.777738 + . ID=CGI_10020617; scaffold410 TRF Tandem_Repeat 81608 81648 82 + . . scaffold410 GLEAN mRNA 140025 140934 1 + . ID=CGI_10020618; scaffold410 TRF Tandem_Repeat 140025 140934 1397 + . . scaffold410 GLEAN mRNA 158353 158701 0.999812 - . ID=CGI_10020622; scaffold410 TRF Tandem_Repeat 158353 158701 195 + . . scaffold410 GLEAN mRNA 158451 158701 0.999812 - . ID=CGI_10020622; scaffold410 TRF Tandem_Repeat 158451 158701 152 + . . scaffold410 GLEAN mRNA 173766 173803 0.986936 + . ID=CGI_10020624; scaffold410 TRF Tandem_Repeat 173766 173803 76 + . . scaffold410 GLEAN mRNA 226203 226250 0.619231 + . ID=CGI_10020627; scaffold410 TRF Tandem_Repeat 226203 226250 82 + . . scaffold410 GLEAN mRNA 265598 265690 0.399222 + . ID=CGI_10020632; scaffold410 WUBlastX LINE_L1-Tx1 265598 265690 28 + . . scaffold410 GLEAN mRNA 265586 265630 0.399222 + . ID=CGI_10020632; scaffold410 WUBlastX LINE_CR1 265586 265630 22 + . . scaffold410 GLEAN mRNA 265574 265651 0.399222 + . ID=CGI_10020632; scaffold410 WUBlastX LINE_L2 265574 265651 22 + . . scaffold410 GLEAN mRNA 262869 263051 0.399222 + . ID=CGI_10020632; scaffold410 WUBlastX LINE_RTE-BovB 262869 263051 43 + . . scaffold410 GLEAN mRNA 263416 265248 0.399222 + . ID=CGI_10020632; scaffold410 WUBlastX LINE_CR1 263416 265248 1324 + . . scaffold410 GLEAN mRNA 289698 289851 0.989219 - . ID=CGI_10020633; scaffold410 TRF Tandem_Repeat 289698 289851 245 + . . scaffold410 GLEAN mRNA 298754 299068 0.996652 + . ID=CGI_10020635; scaffold410 TRF Tandem_Repeat 298754 299068 400 + . . scaffold410 GLEAN mRNA 306341 306589 0.996652 + . ID=CGI_10020635; scaffold410 TRF Tandem_Repeat 306341 306589 417 + . . scaffold410 GLEAN mRNA 309482 309714 0.996652 + . ID=CGI_10020635; scaffold410 TRF Tandem_Repeat 309482 309714 194 + . . scaffold410 GLEAN mRNA 299546 300592 0.996652 + . ID=CGI_10020635; scaffold410 WUBlastX LTR_DIRS 299546 300592 554 - . . scaffold410 GLEAN mRNA 305593 305913 0.996652 + . ID=CGI_10020635; scaffold410 WUBlastX LTR_DIRS 305593 305913 29 - . . scaffold410 GLEAN mRNA 302394 303392 0.996652 + . ID=CGI_10020635; scaffold410 WUBlastX LTR_DIRS 302394 303392 180 - . . scaffold410 GLEAN mRNA 304348 304536 0.996652 + . ID=CGI_10020635; scaffold410 WUBlastX LINE_RTE-X 304348 304536 65 - . . scaffold410 GLEAN mRNA 300343 302370 0.996652 + . ID=CGI_10020635; scaffold410 WUBlastX LTR_DIRS 300343 302370 1294 - . . scaffold410 GLEAN mRNA 302352 302960 0.996652 + . ID=CGI_10020635; scaffold410 WUBlastX LTR_DIRS 302352 302960 199 - . . scaffold410 GLEAN mRNA 305542 305790 0.996652 + . ID=CGI_10020635; scaffold410 WUBlastX LTR_DIRS 305542 305790 26 - . . scaffold410 GLEAN mRNA 314082 314376 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 314082 314376 278 + . . scaffold410 GLEAN mRNA 315557 315730 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 315557 315730 253 + . . scaffold410 GLEAN mRNA 316835 317386 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 316835 317386 971 + . . scaffold410 GLEAN mRNA 318478 318616 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 318478 318616 111 + . . scaffold410 GLEAN mRNA 320344 320405 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 320344 320405 90 + . . scaffold410 GLEAN mRNA 323388 323439 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 323388 323439 50 + . . scaffold410 GLEAN mRNA 323374 323469 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 323374 323469 147 + . . scaffold410 GLEAN mRNA 332900 332958 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 332900 332958 60 + . . scaffold410 GLEAN mRNA 333530 333585 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 333530 333585 55 + . . scaffold410 GLEAN mRNA 333511 333585 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 333511 333585 61 + . . scaffold410 GLEAN mRNA 333531 333619 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 333531 333619 67 + . . scaffold410 GLEAN mRNA 333920 334039 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 333920 334039 113 + . . scaffold410 GLEAN mRNA 333932 334045 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 333932 334045 111 + . . scaffold410 GLEAN mRNA 334191 334252 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 334191 334252 61 + . . scaffold410 GLEAN mRNA 362700 363508 0.999305 + . ID=CGI_10020637; scaffold410 TRF Tandem_Repeat 362700 363508 1171 + . . scaffold410 GLEAN mRNA 364391 364470 0.999305 + . ID=CGI_10020637; scaffold410 TRF Tandem_Repeat 364391 364470 56 + . . scaffold410 GLEAN mRNA 367731 368071 0.999305 + . ID=CGI_10020637; scaffold410 TRF Tandem_Repeat 367731 368071 547 + . . scaffold410 GLEAN mRNA 368126 368505 0.999305 + . ID=CGI_10020637; scaffold410 TRF Tandem_Repeat 368126 368505 258 + . . scaffold410 GLEAN mRNA 385763 385956 0.99795 - . ID=CGI_10020638; scaffold410 TRF Tandem_Repeat 385763 385956 295 + . . scaffold410 GLEAN mRNA 385914 386173 0.99795 - . ID=CGI_10020638; scaffold410 TRF Tandem_Repeat 385914 386173 412 + . . scaffold410 GLEAN mRNA 386138 386297 0.99795 - . ID=CGI_10020638; scaffold410 TRF Tandem_Repeat 386138 386297 257 + . . scaffold410 GLEAN mRNA 400699 400936 1 + . ID=CGI_10020639; scaffold410 TRF Tandem_Repeat 400699 400936 377 + . . scaffold410 GLEAN mRNA 405021 405676 0.702075 + . ID=CGI_10020640; scaffold410 TRF Tandem_Repeat 405021 405676 756 + . . scaffold410 GLEAN mRNA 415694 415733 0.219556 - . ID=CGI_10020641; scaffold410 TRF Tandem_Repeat 415694 415733 71 + . . scaffold410 GLEAN mRNA 418999 419044 0.219556 - . ID=CGI_10020641; scaffold410 TRF Tandem_Repeat 418999 419044 83 + . . scaffold410 GLEAN mRNA 419594 419721 0.219556 - . ID=CGI_10020641; scaffold410 TRF Tandem_Repeat 419594 419721 229 + . . scaffold410 GLEAN mRNA 427352 427542 0.751908 + . ID=CGI_10020643; scaffold410 TRF Tandem_Repeat 427352 427542 330 + . . scaffold410 GLEAN mRNA 428768 429102 0.751908 + . ID=CGI_10020643; scaffold410 TRF Tandem_Repeat 428768 429102 543 + . . scaffold410 GLEAN mRNA 428768 429102 0.751908 + . ID=CGI_10020643; scaffold410 TRF Tandem_Repeat 428768 429102 547 + . . scaffold410 GLEAN mRNA 434563 435498 0.751908 + . ID=CGI_10020643; scaffold410 TRF Tandem_Repeat 434563 435498 1227 + . . scaffold410 GLEAN mRNA 434563 435503 0.751908 + . ID=CGI_10020643; scaffold410 TRF Tandem_Repeat 434563 435503 1141 + . . scaffold410 GLEAN mRNA 456952 456987 0.751908 + . ID=CGI_10020643; scaffold410 TRF Tandem_Repeat 456952 456987 72 + . . scaffold410 GLEAN mRNA 550630 550672 0.993449 + . ID=CGI_10020647; scaffold410 TRF Tandem_Repeat 550630 550672 70 + . . scaffold410 GLEAN mRNA 550622 550671 0.993449 + . ID=CGI_10020647; scaffold410 TRF Tandem_Repeat 550622 550671 57 + . . scaffold410 GLEAN mRNA 550622 550671 0.993449 + . ID=CGI_10020647; scaffold410 TRF Tandem_Repeat 550622 550671 66 + . . scaffold410 GLEAN mRNA 551124 551161 0.993449 + . ID=CGI_10020647; scaffold410 TRF Tandem_Repeat 551124 551161 69 + . . scaffold410 GLEAN mRNA 559513 559563 0.993449 + . ID=CGI_10020647; scaffold410 TRF Tandem_Repeat 559513 559563 93 + . . scaffold410 GLEAN mRNA 560858 561131 0.993449 + . ID=CGI_10020647; scaffold410 TRF Tandem_Repeat 560858 561131 263 + . . scaffold410 GLEAN mRNA 560858 561128 0.993449 + . ID=CGI_10020647; scaffold410 TRF Tandem_Repeat 560858 561128 298 + . . scaffold410 GLEAN mRNA 561989 562158 0.993449 + . ID=CGI_10020647; scaffold410 TRF Tandem_Repeat 561989 562158 218 + . . scaffold410 GLEAN mRNA 638986 639012 0.983594 + . ID=CGI_10020651; scaffold410 TRF Tandem_Repeat 638986 639012 54 + . . scaffold288 GLEAN mRNA 15326 15670 0.942947 + . ID=CGI_10020653; scaffold288 WUBlastX LTR_Gypsy 15326 15670 75 - . . scaffold288 GLEAN mRNA 16679 16977 0.942947 + . ID=CGI_10020653; scaffold288 TRF Tandem_Repeat 16679 16977 167 + . . scaffold288 GLEAN mRNA 16838 16984 0.942947 + . ID=CGI_10020653; scaffold288 TRF Tandem_Repeat 16838 16984 151 + . . scaffold288 GLEAN mRNA 17535 17625 0.942947 + . ID=CGI_10020653; scaffold288 TRF Tandem_Repeat 17535 17625 132 + . . scaffold288 GLEAN mRNA 32463 32513 0.996603 + . ID=CGI_10020656; scaffold288 TRF Tandem_Repeat 32463 32513 102 + . . scaffold288 GLEAN mRNA 39052 39126 0.651135 + . ID=CGI_10020657; scaffold288 WUBlastX LINE_CR1-L2 39052 39126 28 - . . scaffold288 GLEAN mRNA 39081 39656 0.651135 + . ID=CGI_10020657; scaffold288 WUBlastX LINE_L2 39081 39656 158 - . . scaffold288 GLEAN mRNA 39402 39707 0.651135 + . ID=CGI_10020657; scaffold288 WUBlastX LINE_CR1 39402 39707 61 - . . scaffold288 GLEAN mRNA 120260 120311 0.674065 - . ID=CGI_10020658; scaffold288 TRF Tandem_Repeat 120260 120311 104 + . . scaffold288 GLEAN mRNA 137358 137657 0.674065 - . ID=CGI_10020658; scaffold288 WUBlastX LINE_L1-Tx1 137358 137657 80 - . . scaffold288 GLEAN mRNA 136387 137262 0.674065 - . ID=CGI_10020658; scaffold288 WUBlastX LINE_L1-Tx1 136387 137262 29 - . . scaffold288 GLEAN mRNA 137388 137627 0.674065 - . ID=CGI_10020658; scaffold288 WUBlastX LINE_L1-Tx1 137388 137627 122 - . . scaffold288 GLEAN mRNA 137379 137720 0.674065 - . ID=CGI_10020658; scaffold288 WUBlastX LINE_L1-Tx1 137379 137720 36 - . . scaffold288 GLEAN mRNA 145203 145346 0.948447 + . ID=CGI_10020659; scaffold288 WUBlastX LTR_DIRS 145203 145346 47 - . . scaffold288 GLEAN mRNA 145366 145617 0.948447 + . ID=CGI_10020659; scaffold288 WUBlastX LTR_DIRS 145366 145617 96 - . . scaffold288 GLEAN mRNA 145859 146263 0.948447 + . ID=CGI_10020659; scaffold288 WUBlastX LTR_DIRS 145859 146263 24 - . . scaffold288 GLEAN mRNA 160944 160986 0.948447 + . ID=CGI_10020659; scaffold288 TRF Tandem_Repeat 160944 160986 86 + . . scaffold288 GLEAN mRNA 158671 159126 0.948447 + . ID=CGI_10020659; scaffold288 WUBlastX DNA_TcMar-Tc1 158671 159126 262 - . . scaffold288 GLEAN mRNA 159110 159565 0.948447 + . ID=CGI_10020659; scaffold288 WUBlastX DNA_TcMar-Tc1 159110 159565 195 - . . scaffold288 GLEAN mRNA 159565 159654 0.948447 + . ID=CGI_10020659; scaffold288 WUBlastX DNA_TcMar-Tc1 159565 159654 25 - . . scaffold288 GLEAN mRNA 168714 169016 0.392804 - . ID=CGI_10020660; scaffold288 WUBlastX LTR_Pao 168714 169016 85 + . . scaffold288 GLEAN mRNA 168336 169019 0.392804 - . ID=CGI_10020660; scaffold288 WUBlastX LTR_Pao 168336 169019 68 + . . scaffold288 GLEAN mRNA 180591 180627 0.392804 - . ID=CGI_10020660; scaffold288 TRF Tandem_Repeat 180591 180627 56 + . . scaffold288 GLEAN mRNA 209609 209719 0.392804 - . ID=CGI_10020660; scaffold288 WUBlastX LINE_L1-Tx1 209609 209719 60 - . . scaffold288 GLEAN mRNA 210776 211132 0.392804 - . ID=CGI_10020660; scaffold288 WUBlastX LINE_L1-Tx1 210776 211132 102 - . . scaffold288 GLEAN mRNA 209609 209740 0.392804 - . ID=CGI_10020660; scaffold288 WUBlastX LINE_L1-Tx1 209609 209740 57 - . . scaffold288 GLEAN mRNA 207804 208109 0.392804 - . ID=CGI_10020660; scaffold288 WUBlastX DNA_Harbinger 207804 208109 121 - . . scaffold288 GLEAN mRNA 208911 209609 0.392804 - . ID=CGI_10020660; scaffold288 WUBlastX LINE_RTE-BovB 208911 209609 71 - . . scaffold288 GLEAN mRNA 210555 210725 0.392804 - . ID=CGI_10020660; scaffold288 WUBlastX LINE_L1 210555 210725 91 - . . scaffold288 GLEAN mRNA 209031 209609 0.392804 - . ID=CGI_10020660; scaffold288 WUBlastX LINE_L1-Tx1 209031 209609 375 - . . scaffold288 GLEAN mRNA 207813 208184 0.392804 - . ID=CGI_10020660; scaffold288 WUBlastX DNA_Harbinger 207813 208184 107 - . . scaffold288 GLEAN mRNA 209594 209788 0.392804 - . ID=CGI_10020660; scaffold288 WUBlastX LINE_L1-Tx1 209594 209788 34 - . . scaffold288 GLEAN mRNA 210528 210878 0.392804 - . ID=CGI_10020660; scaffold288 WUBlastX LINE_L1 210528 210878 81 - . . scaffold288 GLEAN mRNA 214577 215886 0.392804 - . ID=CGI_10020660; scaffold288 TRF Tandem_Repeat 214577 215924 1306 + . . scaffold288 GLEAN mRNA 215242 215886 0.392804 - . ID=CGI_10020660; scaffold288 TRF Tandem_Repeat 215242 215907 407 + . . scaffold288 GLEAN mRNA 369175 370180 1 - . ID=CGI_10020666; scaffold288 TRF Tandem_Repeat 369175 370180 1520 + . . scaffold288 GLEAN mRNA 377389 377439 0.791313 - . ID=CGI_10020667; scaffold288 TRF Tandem_Repeat 377389 377439 102 + . . scaffold288 GLEAN mRNA 402265 402292 0.999006 + . ID=CGI_10020669; scaffold288 TRF Tandem_Repeat 402265 402292 56 + . . scaffold288 GLEAN mRNA 404680 405168 0.999006 + . ID=CGI_10020669; scaffold288 TRF Tandem_Repeat 404680 405168 562 + . . scaffold288 GLEAN mRNA 408426 408780 0.999006 + . ID=CGI_10020669; scaffold288 TRF Tandem_Repeat 408426 408780 436 + . . scaffold288 GLEAN mRNA 413223 413286 0.999006 + . ID=CGI_10020669; scaffold288 TRF Tandem_Repeat 413223 413286 92 + . . scaffold288 GLEAN mRNA 430267 430323 1 + . ID=CGI_10020671; scaffold288 TRF Tandem_Repeat 430267 430323 51 + . . scaffold288 GLEAN mRNA 434360 434412 0.992768 - . ID=CGI_10020672; scaffold288 TRF Tandem_Repeat 434360 434412 81 + . . scaffold288 GLEAN mRNA 434373 434412 0.992768 - . ID=CGI_10020672; scaffold288 TRF Tandem_Repeat 434373 434412 53 + . . scaffold288 GLEAN mRNA 465043 465080 0.999287 - . ID=CGI_10020674; scaffold288 TRF Tandem_Repeat 465043 465080 76 + . . scaffold288 GLEAN mRNA 481410 481447 0.524575 + . ID=CGI_10020675; scaffold288 TRF Tandem_Repeat 481410 481447 76 + . . scaffold288 GLEAN mRNA 484394 484464 0.524575 + . ID=CGI_10020675; scaffold288 TRF Tandem_Repeat 484394 484464 133 + . . scaffold288 GLEAN mRNA 501053 501099 0.650682 + . ID=CGI_10020676; scaffold288 TRF Tandem_Repeat 501053 501099 94 + . . scaffold288 GLEAN mRNA 502576 502648 0.650682 + . ID=CGI_10020676; scaffold288 TRF Tandem_Repeat 502576 502648 137 + . . scaffold288 GLEAN mRNA 503532 503567 0.650682 + . ID=CGI_10020676; scaffold288 TRF Tandem_Repeat 503532 503567 72 + . . scaffold288 GLEAN mRNA 508978 509289 0.650682 + . ID=CGI_10020676; scaffold288 TRF Tandem_Repeat 508978 509289 406 + . . scaffold288 GLEAN mRNA 508978 509289 0.650682 + . ID=CGI_10020676; scaffold288 TRF Tandem_Repeat 508978 509289 438 + . . scaffold288 GLEAN mRNA 510540 510583 0.650682 + . ID=CGI_10020676; scaffold288 TRF Tandem_Repeat 510540 510583 70 + . . scaffold288 GLEAN mRNA 511799 511842 0.650682 + . ID=CGI_10020676; scaffold288 TRF Tandem_Repeat 511799 511842 70 + . . scaffold288 GLEAN mRNA 522235 522272 0.877428 + . ID=CGI_10020677; scaffold288 TRF Tandem_Repeat 522235 522272 69 + . . scaffold288 GLEAN mRNA 528627 529382 0.877428 + . ID=CGI_10020677; scaffold288 TRF Tandem_Repeat 528627 529382 1148 + . . scaffold288 GLEAN mRNA 528627 529382 0.751787 - . ID=CGI_10020678; scaffold288 TRF Tandem_Repeat 528627 529382 1148 + . . scaffold288 GLEAN mRNA 556817 556859 0.999999 - . ID=CGI_10020679; scaffold288 TRF Tandem_Repeat 556817 556859 86 + . . scaffold288 GLEAN mRNA 584778 584851 0.983686 + . ID=CGI_10020681; scaffold288 TRF Tandem_Repeat 584778 584851 148 + . . scaffold288 GLEAN mRNA 591087 591149 0.983686 + . ID=CGI_10020681; scaffold288 TRF Tandem_Repeat 591087 591149 119 + . . scaffold288 GLEAN mRNA 597625 597768 0.999238 - . ID=CGI_10020682; scaffold288 WUBlastX LTR_Gypsy 597625 597768 26 - . . scaffold288 GLEAN mRNA 598102 598224 0.999238 - . ID=CGI_10020682; scaffold288 WUBlastX LTR_Gypsy 598102 598224 31 - . . scaffold288 GLEAN mRNA 606018 606053 0.805614 + . ID=CGI_10020684; scaffold288 TRF Tandem_Repeat 606018 606053 72 + . . scaffold288 GLEAN mRNA 612664 612705 1 + . ID=CGI_10020686; scaffold288 TRF Tandem_Repeat 612664 612705 75 + . . scaffold288 GLEAN mRNA 612705 612731 1 + . ID=CGI_10020686; scaffold288 TRF Tandem_Repeat 612705 612731 54 + . . scaffold288 GLEAN mRNA 638510 638579 0.99996 + . ID=CGI_10020688; scaffold288 TRF Tandem_Repeat 638510 638579 133 + . . scaffold85 GLEAN mRNA 20776 20841 0.80239 + . ID=CGI_10020689; scaffold85 TRF Tandem_Repeat 20776 20841 132 + . . scaffold85 GLEAN mRNA 39677 40801 0.662858 + . ID=CGI_10020690; scaffold85 TRF Tandem_Repeat 39677 40801 1525 + . . scaffold85 GLEAN mRNA 41729 41897 0.662858 + . ID=CGI_10020690; scaffold85 TRF Tandem_Repeat 41729 41897 252 + . . scaffold85 GLEAN mRNA 41823 41912 0.662858 + . ID=CGI_10020690; scaffold85 TRF Tandem_Repeat 41823 41912 69 + . . scaffold85 GLEAN mRNA 41898 43246 0.662858 + . ID=CGI_10020690; scaffold85 TRF Tandem_Repeat 41898 43246 1426 + . . scaffold85 GLEAN mRNA 48118 48162 0.999567 - . ID=CGI_10020691; scaffold85 TRF Tandem_Repeat 48118 48162 90 + . . scaffold85 GLEAN mRNA 59299 59344 0.999567 - . ID=CGI_10020691; scaffold85 TRF Tandem_Repeat 59299 59344 56 + . . scaffold85 GLEAN mRNA 61014 61073 0.999567 - . ID=CGI_10020691; scaffold85 TRF Tandem_Repeat 61014 61073 57 + . . scaffold85 GLEAN mRNA 61831 62616 0.999567 - . ID=CGI_10020691; scaffold85 TRF Tandem_Repeat 61831 62616 408 + . . scaffold85 GLEAN mRNA 61871 62623 0.999567 - . ID=CGI_10020691; scaffold85 TRF Tandem_Repeat 61871 62623 772 + . . scaffold85 GLEAN mRNA 61963 62623 0.999567 - . ID=CGI_10020691; scaffold85 TRF Tandem_Repeat 61963 62623 748 + . . scaffold85 GLEAN mRNA 64706 64863 0.999567 - . ID=CGI_10020691; scaffold85 TRF Tandem_Repeat 64706 64863 133 + . . scaffold85 GLEAN mRNA 69600 69696 0.541196 + . ID=CGI_10020692; scaffold85 TRF Tandem_Repeat 69600 69696 104 + . . scaffold85 GLEAN mRNA 91460 91719 0.999481 - . ID=CGI_10020694; scaffold85 TRF Tandem_Repeat 91460 91719 195 + . . scaffold85 GLEAN mRNA 91754 92049 0.999481 - . ID=CGI_10020694; scaffold85 TRF Tandem_Repeat 91754 92049 556 + . . scaffold85 GLEAN mRNA 92023 92141 0.999481 - . ID=CGI_10020694; scaffold85 TRF Tandem_Repeat 92023 92141 118 + . . scaffold85 GLEAN mRNA 94510 94548 0.999481 - . ID=CGI_10020694; scaffold85 TRF Tandem_Repeat 94510 94548 78 + . . scaffold85 GLEAN mRNA 96219 96259 0.999481 - . ID=CGI_10020694; scaffold85 TRF Tandem_Repeat 96219 96259 82 + . . scaffold85 GLEAN mRNA 119626 119658 0.432389 - . ID=CGI_10020695; scaffold85 TRF Tandem_Repeat 119626 119658 57 + . . scaffold85 GLEAN mRNA 142960 143007 0.858896 - . ID=CGI_10020696; scaffold85 TRF Tandem_Repeat 142960 143007 96 + . . scaffold85 GLEAN mRNA 146777 146827 0.858896 - . ID=CGI_10020696; scaffold85 TRF Tandem_Repeat 146777 146827 102 + . . scaffold85 GLEAN mRNA 147427 147457 0.858896 - . ID=CGI_10020696; scaffold85 TRF Tandem_Repeat 147427 147457 62 + . . scaffold85 GLEAN mRNA 215579 215609 0.999554 - . ID=CGI_10020698; scaffold85 TRF Tandem_Repeat 215579 215609 53 + . . scaffold85 GLEAN mRNA 220697 220729 0.999554 - . ID=CGI_10020698; scaffold85 TRF Tandem_Repeat 220697 220729 66 + . . scaffold85 GLEAN mRNA 236396 236448 0.728519 + . ID=CGI_10020700; scaffold85 TRF Tandem_Repeat 236396 236448 106 + . . scaffold85 GLEAN mRNA 236503 236555 0.728519 + . ID=CGI_10020700; scaffold85 TRF Tandem_Repeat 236503 236555 65 + . . scaffold85 GLEAN mRNA 241939 242005 0.728519 + . ID=CGI_10020700; scaffold85 TRF Tandem_Repeat 241939 242005 89 + . . scaffold85 GLEAN mRNA 242496 242529 0.728519 + . ID=CGI_10020700; scaffold85 TRF Tandem_Repeat 242496 242529 68 + . . scaffold85 GLEAN mRNA 242527 242559 0.728519 + . ID=CGI_10020700; scaffold85 TRF Tandem_Repeat 242527 242559 66 + . . scaffold85 GLEAN mRNA 242747 242795 0.728519 + . ID=CGI_10020700; scaffold85 TRF Tandem_Repeat 242747 242795 98 + . . scaffold85 GLEAN mRNA 245184 245250 0.728519 + . ID=CGI_10020700; scaffold85 TRF Tandem_Repeat 245184 245250 80 + . . scaffold85 GLEAN mRNA 264343 264701 0.979744 + . ID=CGI_10020701; scaffold85 TRF Tandem_Repeat 264343 264701 517 + . . scaffold85 GLEAN mRNA 264491 264602 0.979744 + . ID=CGI_10020701; scaffold85 TRF Tandem_Repeat 264491 264602 71 + . . scaffold85 GLEAN mRNA 272805 272961 0.979744 + . ID=CGI_10020701; scaffold85 TRF Tandem_Repeat 272805 272961 99 + . . scaffold85 GLEAN mRNA 353334 354164 0.849566 - . ID=CGI_10020703; scaffold85 WUBlastX LTR_Gypsy-Cigr 353334 354164 646 - . . scaffold85 GLEAN mRNA 351874 353313 0.849566 - . ID=CGI_10020703; scaffold85 WUBlastX LTR_Gypsy-Cigr 351874 353313 809 - . . scaffold85 GLEAN mRNA 353439 354350 0.849566 - . ID=CGI_10020703; scaffold85 WUBlastX LTR_Gypsy 353439 354350 335 - . . scaffold85 GLEAN mRNA 354345 354545 0.849566 - . ID=CGI_10020703; scaffold85 WUBlastX LTR_Gypsy 354345 354545 31 - . . scaffold85 GLEAN mRNA 390273 390677 0.490241 + . ID=CGI_10020705; scaffold85 WUBlastX DNA_Kolobok-Hyd 390273 390677 28 + . . scaffold85 GLEAN mRNA 457966 458051 0.783922 + . ID=CGI_10020708; scaffold85 TRF Tandem_Repeat 457966 458051 57 + . . scaffold85 GLEAN mRNA 460681 460715 0.783922 + . ID=CGI_10020708; scaffold85 TRF Tandem_Repeat 460681 460715 61 + . . scaffold85 GLEAN mRNA 479795 479877 0.999676 - . ID=CGI_10020709; scaffold85 TRF Tandem_Repeat 479795 479877 72 + . . scaffold85 GLEAN mRNA 479796 479881 0.999676 - . ID=CGI_10020709; scaffold85 TRF Tandem_Repeat 479796 479881 52 + . . scaffold85 GLEAN mRNA 479796 479877 0.999676 - . ID=CGI_10020709; scaffold85 TRF Tandem_Repeat 479796 479877 94 + . . scaffold85 GLEAN mRNA 480974 481015 0.999676 - . ID=CGI_10020709; scaffold85 TRF Tandem_Repeat 480974 481015 84 + . . scaffold85 GLEAN mRNA 535337 535434 0.593381 - . ID=CGI_10020711; scaffold85 TRF Tandem_Repeat 535337 535434 124 + . . scaffold85 GLEAN mRNA 543873 543934 0.999735 + . ID=CGI_10020712; scaffold85 TRF Tandem_Repeat 543873 543934 124 + . . scaffold85 GLEAN mRNA 553035 553323 0.612885 - . ID=CGI_10020713; scaffold85 TRF Tandem_Repeat 553035 553323 330 + . . scaffold85 GLEAN mRNA 596436 596627 0.54615 - . ID=CGI_10020717; scaffold85 TRF Tandem_Repeat 596436 596627 186 + . . scaffold85 GLEAN mRNA 619470 619494 1 - . ID=CGI_10020719; scaffold85 TRF Tandem_Repeat 619470 619494 50 + . . scaffold85 GLEAN mRNA 617470 618390 1 - . ID=CGI_10020719; scaffold85 WUBlastX LINE_L2 617470 618390 563 - . . scaffold85 GLEAN mRNA 616593 617498 1 - . ID=CGI_10020719; scaffold85 WUBlastX LINE_L2 616593 617498 397 - . . scaffold85 GLEAN mRNA 623354 623388 1 - . ID=CGI_10020719; scaffold85 TRF Tandem_Repeat 623354 623388 61 + . . scaffold85 GLEAN mRNA 634497 635528 1 - . ID=CGI_10020719; scaffold85 WUBlastX LTR_Gypsy 634497 635528 127 - . . scaffold85 GLEAN mRNA 634689 636224 1 - . ID=CGI_10020719; scaffold85 WUBlastX LTR_Gypsy 634689 636224 51 - . . scaffold85 GLEAN mRNA 635274 635873 1 - . ID=CGI_10020719; scaffold85 WUBlastX LTR_Gypsy-Cigr 635274 635873 194 - . . scaffold85 GLEAN mRNA 635280 635756 1 - . ID=CGI_10020719; scaffold85 WUBlastX LTR_Gypsy-Cigr 635280 635756 197 - . . scaffold85 GLEAN mRNA 634956 635927 1 - . ID=CGI_10020719; scaffold85 WUBlastX LTR_Gypsy 634956 635927 187 - . . scaffold85 GLEAN mRNA 622680 622967 1 - . ID=CGI_10020719; scaffold85 WUBlastX LINE_RTE-X 622680 622967 40 + . . scaffold698 GLEAN mRNA 23658 23690 1 - . ID=CGI_10020722; scaffold698 TRF Tandem_Repeat 23658 23690 57 + . . scaffold698 GLEAN mRNA 39757 39922 0.531037 + . ID=CGI_10020725; scaffold698 TRF Tandem_Repeat 39757 39922 260 + . . scaffold698 GLEAN mRNA 52631 52685 0.800424 + . ID=CGI_10020726; scaffold698 TRF Tandem_Repeat 52631 52685 110 + . . scaffold698 GLEAN mRNA 51247 51423 0.800424 + . ID=CGI_10020726; scaffold698 WUBlastX LINE_RTE-X 51247 51423 67 - . . scaffold698 GLEAN mRNA 51277 51423 0.800424 + . ID=CGI_10020726; scaffold698 WUBlastX LINE_RTE-X 51277 51423 76 - . . scaffold698 GLEAN mRNA 67072 67366 0.800424 + . ID=CGI_10020726; scaffold698 TRF Tandem_Repeat 67072 67366 265 + . . scaffold698 GLEAN mRNA 67758 68069 0.800424 + . ID=CGI_10020726; scaffold698 WUBlastX DNA_Harbinger 67758 68069 104 - . . scaffold698 GLEAN mRNA 82737 84845 0.592995 - . ID=CGI_10020727; scaffold698 WUBlastX LTR_DIRS 82737 84845 354 - . . scaffold698 GLEAN mRNA 82728 84389 0.592995 - . ID=CGI_10020727; scaffold698 WUBlastX LTR_DIRS 82728 84389 1217 - . . scaffold698 GLEAN mRNA 84824 84979 0.592995 - . ID=CGI_10020727; scaffold698 WUBlastX LTR_Gypsy 84824 84979 41 - . . scaffold698 GLEAN mRNA 81946 82725 0.592995 - . ID=CGI_10020727; scaffold698 WUBlastX LTR_DIRS 81946 82725 446 - . . scaffold698 GLEAN mRNA 98899 98928 0.999994 + . ID=CGI_10020728; scaffold698 TRF Tandem_Repeat 98899 98928 51 + . . scaffold698 GLEAN mRNA 111669 111704 0.499068 - . ID=CGI_10020729; scaffold698 TRF Tandem_Repeat 111669 111704 63 + . . scaffold698 GLEAN mRNA 147995 148056 0.599334 - . ID=CGI_10020733; scaffold698 TRF Tandem_Repeat 147995 148056 124 + . . scaffold698 GLEAN mRNA 210115 210168 0.793103 + . ID=CGI_10020735; scaffold698 TRF Tandem_Repeat 210115 210168 108 + . . scaffold698 GLEAN mRNA 218893 218966 0.793097 + . ID=CGI_10020736; scaffold698 TRF Tandem_Repeat 218893 218966 139 + . . scaffold698 GLEAN mRNA 223543 223668 0.793097 + . ID=CGI_10020736; scaffold698 TRF Tandem_Repeat 223543 223668 148 + . . scaffold698 GLEAN mRNA 216571 217209 0.793097 + . ID=CGI_10020736; scaffold698 WUBlastX LINE_L1-Tx1 216571 217209 92 - . . scaffold698 GLEAN mRNA 216274 217083 0.793097 + . ID=CGI_10020736; scaffold698 WUBlastX LINE_L1 216274 217083 54 - . . scaffold698 GLEAN mRNA 216460 217080 0.793097 + . ID=CGI_10020736; scaffold698 WUBlastX LINE_L1-Tx1 216460 217080 260 - . . scaffold698 GLEAN mRNA 217320 217403 0.793097 + . ID=CGI_10020736; scaffold698 WUBlastX LINE_L1 217320 217403 25 - . . scaffold698 GLEAN mRNA 234500 234553 0.790051 - . ID=CGI_10020737; scaffold698 TRF Tandem_Repeat 234500 234553 108 + . . scaffold698 GLEAN mRNA 239481 239582 0.790051 - . ID=CGI_10020737; scaffold698 TRF Tandem_Repeat 239481 239582 172 + . . scaffold698 GLEAN mRNA 246236 246514 0.999676 + . ID=CGI_10020738; scaffold698 WUBlastX LINE_CR1-L2 246236 246514 36 - . . scaffold698 GLEAN mRNA 256279 256337 0.967963 + . ID=CGI_10020739; scaffold698 TRF Tandem_Repeat 256279 256337 118 + . . scaffold698 GLEAN mRNA 332801 333074 0.590443 - . ID=CGI_10020741; scaffold698 TRF Tandem_Repeat 332801 333074 314 + . . scaffold698 GLEAN mRNA 332800 333074 0.590443 - . ID=CGI_10020741; scaffold698 TRF Tandem_Repeat 332800 333074 316 + . . scaffold698 GLEAN mRNA 332801 333074 0.590443 - . ID=CGI_10020741; scaffold698 TRF Tandem_Repeat 332801 333074 393 + . . scaffold698 GLEAN mRNA 333734 334080 0.590443 - . ID=CGI_10020741; scaffold698 TRF Tandem_Repeat 333734 334080 568 + . . scaffold698 GLEAN mRNA 333734 334037 0.590443 - . ID=CGI_10020741; scaffold698 TRF Tandem_Repeat 333734 334037 348 + . . scaffold698 GLEAN mRNA 333734 334081 0.590443 - . ID=CGI_10020741; scaffold698 TRF Tandem_Repeat 333734 334081 318 + . . scaffold698 GLEAN mRNA 337145 337225 0.590443 - . ID=CGI_10020741; scaffold698 TRF Tandem_Repeat 337145 337225 153 + . . scaffold698 GLEAN mRNA 353444 353499 0.863777 - . ID=CGI_10020742; scaffold698 TRF Tandem_Repeat 353444 353499 112 + . . scaffold698 GLEAN mRNA 355193 356046 0.863777 - . ID=CGI_10020742; scaffold698 TRF Tandem_Repeat 355193 356046 1007 + . . scaffold698 GLEAN mRNA 368442 368482 1 - . ID=CGI_10020743; scaffold698 TRF Tandem_Repeat 368442 368482 82 + . . scaffold698 GLEAN mRNA 378864 378920 0.648455 + . ID=CGI_10020745; scaffold698 TRF Tandem_Repeat 378864 378920 114 + . . scaffold698 GLEAN mRNA 422852 422913 0.999408 + . ID=CGI_10020749; scaffold698 TRF Tandem_Repeat 422852 422913 51 + . . scaffold698 GLEAN mRNA 448620 448660 0.694302 - . ID=CGI_10020751; scaffold698 TRF Tandem_Repeat 448620 448660 82 + . . scaffold698 GLEAN mRNA 554683 554786 0.28436 - . ID=CGI_10020754; scaffold698 TRF Tandem_Repeat 554683 554786 178 + . . scaffold698 GLEAN mRNA 557867 558289 0.28436 - . ID=CGI_10020754; scaffold698 TRF Tandem_Repeat 557867 558289 388 + . . scaffold698 GLEAN mRNA 559838 560110 0.28436 - . ID=CGI_10020754; scaffold698 TRF Tandem_Repeat 559838 560110 165 + . . scaffold698 GLEAN mRNA 563144 563190 0.28436 - . ID=CGI_10020754; scaffold698 TRF Tandem_Repeat 563144 563190 94 + . . scaffold698 GLEAN mRNA 567917 567961 0.28436 - . ID=CGI_10020754; scaffold698 TRF Tandem_Repeat 567917 567961 54 + . . scaffold698 GLEAN mRNA 568090 568449 0.28436 - . ID=CGI_10020754; scaffold698 TRF Tandem_Repeat 568090 568449 332 + . . scaffold698 GLEAN mRNA 568233 568449 0.28436 - . ID=CGI_10020754; scaffold698 TRF Tandem_Repeat 568233 568449 380 + . . scaffold698 GLEAN mRNA 570948 570997 0.28436 - . ID=CGI_10020754; scaffold698 TRF Tandem_Repeat 570948 570997 100 + . . scaffold698 GLEAN mRNA 572457 572542 0.28436 - . ID=CGI_10020754; scaffold698 TRF Tandem_Repeat 572457 572542 163 + . . scaffold698 GLEAN mRNA 576283 576617 0.28436 - . ID=CGI_10020754; scaffold698 TRF Tandem_Repeat 576283 576617 162 + . . scaffold698 GLEAN mRNA 573427 574111 0.28436 - . ID=CGI_10020754; scaffold698 TRF Tandem_Repeat 573427 574111 1118 + . . scaffold698 GLEAN mRNA 583855 584229 1 + . ID=CGI_10020755; scaffold698 TRF Tandem_Repeat 583855 584229 732 + . . scaffold698 GLEAN mRNA 587477 587510 1 + . ID=CGI_10020755; scaffold698 TRF Tandem_Repeat 587477 587510 68 + . . scaffold698 GLEAN mRNA 587508 587553 1 + . ID=CGI_10020755; scaffold698 TRF Tandem_Repeat 587508 587553 92 + . . scaffold698 GLEAN mRNA 621961 622530 0.993906 - . ID=CGI_10020757; scaffold698 TRF Tandem_Repeat 621961 622530 420 + . . scaffold698 GLEAN mRNA 626158 627215 0.993906 - . ID=CGI_10020757; scaffold698 TRF Tandem_Repeat 626158 627215 884 + . . scaffold698 GLEAN mRNA 626158 627215 0.993906 - . ID=CGI_10020757; scaffold698 TRF Tandem_Repeat 626158 627215 1118 + . . scaffold698 GLEAN mRNA 626158 627215 0.993906 - . ID=CGI_10020757; scaffold698 TRF Tandem_Repeat 626158 627215 1118 + . . scaffold698 GLEAN mRNA 629301 629426 0.993906 - . ID=CGI_10020757; scaffold698 TRF Tandem_Repeat 629301 629426 64 + . . scaffold698 GLEAN mRNA 629374 629426 0.993906 - . ID=CGI_10020757; scaffold698 TRF Tandem_Repeat 629374 629426 97 + . . scaffold698 GLEAN mRNA 621573 622642 0.993906 - . ID=CGI_10020757; scaffold698 TRF Tandem_Repeat 621573 622642 1125 + . . scaffold698 GLEAN mRNA 656349 656714 0.999594 - . ID=CGI_10020758; scaffold698 TRF Tandem_Repeat 656349 656714 632 + . . scaffold1004 GLEAN mRNA 10605 11345 0.57306 + . ID=CGI_10020759; scaffold1004 WUBlastX DNA_IS4EU 10605 11345 100 + . . scaffold1004 GLEAN mRNA 10803 11345 0.57306 + . ID=CGI_10020759; scaffold1004 WUBlastX DNA_IS4EU 10803 11345 153 + . . scaffold1004 GLEAN mRNA 10461 11345 0.57306 + . ID=CGI_10020759; scaffold1004 WUBlastX DNA_IS4EU 10461 11345 32 + . . scaffold1004 GLEAN mRNA 10605 11345 1 - . ID=CGI_10020760; scaffold1004 WUBlastX DNA_IS4EU 10605 11345 100 + . . scaffold1004 GLEAN mRNA 10803 11345 1 - . ID=CGI_10020760; scaffold1004 WUBlastX DNA_IS4EU 10803 11345 153 + . . scaffold1004 GLEAN mRNA 10461 11345 1 - . ID=CGI_10020760; scaffold1004 WUBlastX DNA_IS4EU 10461 11345 32 + . . scaffold1004 GLEAN mRNA 24633 24682 1 - . ID=CGI_10020760; scaffold1004 TRF Tandem_Repeat 24633 24682 91 + . . scaffold1004 GLEAN mRNA 30755 30809 1 - . ID=CGI_10020760; scaffold1004 TRF Tandem_Repeat 30755 30809 65 + . . scaffold1004 GLEAN mRNA 32350 32379 1 - . ID=CGI_10020760; scaffold1004 TRF Tandem_Repeat 32350 32379 60 + . . scaffold1004 GLEAN mRNA 52379 52419 0.999351 + . ID=CGI_10020761; scaffold1004 TRF Tandem_Repeat 52379 52419 82 + . . scaffold1004 GLEAN mRNA 53966 54014 0.999351 + . ID=CGI_10020761; scaffold1004 TRF Tandem_Repeat 53966 54014 89 + . . scaffold1004 GLEAN mRNA 54013 54054 0.999351 + . ID=CGI_10020761; scaffold1004 TRF Tandem_Repeat 54013 54054 84 + . . scaffold1004 GLEAN mRNA 57014 57072 0.999351 + . ID=CGI_10020761; scaffold1004 TRF Tandem_Repeat 57014 57072 118 + . . scaffold1004 GLEAN mRNA 57141 57165 0.999351 + . ID=CGI_10020761; scaffold1004 TRF Tandem_Repeat 57141 57165 50 + . . scaffold1004 GLEAN mRNA 64797 64829 0.999598 + . ID=CGI_10020762; scaffold1004 TRF Tandem_Repeat 64797 64829 66 + . . scaffold1004 GLEAN mRNA 104661 105360 0.352683 - . ID=CGI_10020763; scaffold1004 TRF Tandem_Repeat 104661 105360 961 + . . scaffold1004 GLEAN mRNA 206084 206156 1 - . ID=CGI_10020764; scaffold1004 TRF Tandem_Repeat 206084 206156 65 + . . scaffold1004 GLEAN mRNA 206063 207261 1 - . ID=CGI_10020764; scaffold1004 TRF Tandem_Repeat 206063 207261 1328 + . . scaffold1004 GLEAN mRNA 206194 207261 1 - . ID=CGI_10020764; scaffold1004 TRF Tandem_Repeat 206194 207261 1298 + . . scaffold1004 GLEAN mRNA 206069 207261 1 - . ID=CGI_10020764; scaffold1004 TRF Tandem_Repeat 206069 207261 1363 + . . scaffold1004 GLEAN mRNA 209301 211476 1 - . ID=CGI_10020764; scaffold1004 TRF Tandem_Repeat 209301 211476 3645 + . . scaffold1004 GLEAN mRNA 209301 211476 1 - . ID=CGI_10020764; scaffold1004 TRF Tandem_Repeat 209301 211476 3617 + . . scaffold1004 GLEAN mRNA 277179 277409 0.682505 - . ID=CGI_10020767; scaffold1004 TRF Tandem_Repeat 277179 277409 255 + . . scaffold1004 GLEAN mRNA 283613 283674 0.682505 - . ID=CGI_10020767; scaffold1004 TRF Tandem_Repeat 283613 283674 117 + . . scaffold1004 GLEAN mRNA 284272 284313 0.682505 - . ID=CGI_10020767; scaffold1004 TRF Tandem_Repeat 284272 284313 84 + . . scaffold1004 GLEAN mRNA 292103 292138 0.682505 - . ID=CGI_10020767; scaffold1004 TRF Tandem_Repeat 292103 292138 72 + . . scaffold1004 GLEAN mRNA 282640 283005 0.682505 - . ID=CGI_10020767; scaffold1004 WUBlastX LINE_Penelope 282640 283005 85 + . . scaffold1004 GLEAN mRNA 281675 282493 0.682505 - . ID=CGI_10020767; scaffold1004 WUBlastX LINE_Penelope 281675 282493 332 + . . scaffold1004 GLEAN mRNA 282628 283137 0.682505 - . ID=CGI_10020767; scaffold1004 WUBlastX LINE_Penelope 282628 283137 68 + . . scaffold1004 GLEAN mRNA 281675 282697 0.682505 - . ID=CGI_10020767; scaffold1004 WUBlastX LINE_Penelope 281675 282697 242 + . . scaffold1004 GLEAN mRNA 310286 310637 0.660675 + . ID=CGI_10020769; scaffold1004 TRF Tandem_Repeat 310286 310637 677 + . . scaffold1004 GLEAN mRNA 311690 311797 0.660675 + . ID=CGI_10020769; scaffold1004 TRF Tandem_Repeat 311690 311797 99 + . . scaffold1004 GLEAN mRNA 331669 331765 0.702335 + . ID=CGI_10020771; scaffold1004 TRF Tandem_Repeat 331669 331765 79 + . . scaffold1004 GLEAN mRNA 399948 400262 0.576977 - . ID=CGI_10020776; scaffold1004 TRF Tandem_Repeat 399948 400262 186 + . . scaffold1004 GLEAN mRNA 431971 431999 0.999986 - . ID=CGI_10020778; scaffold1004 TRF Tandem_Repeat 431971 431999 58 + . . scaffold1004 GLEAN mRNA 450125 450178 0.990978 + . ID=CGI_10020780; scaffold1004 TRF Tandem_Repeat 450125 450178 99 + . . scaffold1004 GLEAN mRNA 450405 450436 0.990978 + . ID=CGI_10020780; scaffold1004 TRF Tandem_Repeat 450405 450436 64 + . . scaffold1004 GLEAN mRNA 463712 464392 0.997732 - . ID=CGI_10020781; scaffold1004 WUBlastX DNA_Kolobok-Hyd 463712 464392 35 - . . scaffold1004 GLEAN mRNA 478482 478526 0.997732 - . ID=CGI_10020781; scaffold1004 TRF Tandem_Repeat 478482 478526 90 + . . scaffold1004 GLEAN mRNA 485316 485362 0.997732 - . ID=CGI_10020781; scaffold1004 TRF Tandem_Repeat 485316 485362 66 + . . scaffold1004 GLEAN mRNA 486212 486268 0.997732 - . ID=CGI_10020781; scaffold1004 WUBlastX LINE_RTE-BovB 486212 486268 25 - . . scaffold1004 GLEAN mRNA 487249 487770 0.997732 - . ID=CGI_10020781; scaffold1004 WUBlastX LINE_RTE-BovB 487249 487770 43 - . . scaffold1004 GLEAN mRNA 485952 486098 0.997732 - . ID=CGI_10020781; scaffold1004 WUBlastX LINE_RTE-RTE 485952 486098 46 - . . scaffold1004 GLEAN mRNA 485553 486074 0.997732 - . ID=CGI_10020781; scaffold1004 WUBlastX LINE_RTE-BovB 485553 486074 99 - . . scaffold1004 GLEAN mRNA 486256 487689 0.997732 - . ID=CGI_10020781; scaffold1004 WUBlastX LINE_RTE-BovB 486256 487689 513 - . . scaffold1004 GLEAN mRNA 501993 502039 0.925076 + . ID=CGI_10020783; scaffold1004 TRF Tandem_Repeat 501993 502039 85 + . . scaffold1004 GLEAN mRNA 503087 503127 0.925076 + . ID=CGI_10020783; scaffold1004 TRF Tandem_Repeat 503087 503127 82 + . . scaffold1004 GLEAN mRNA 524723 525106 0.446372 + . ID=CGI_10020784; scaffold1004 TRF Tandem_Repeat 524723 525106 624 + . . scaffold1004 GLEAN mRNA 549194 549245 0.997363 + . ID=CGI_10020787; scaffold1004 TRF Tandem_Repeat 549194 549245 52 + . . scaffold1004 GLEAN mRNA 549245 549281 0.997363 + . ID=CGI_10020787; scaffold1004 TRF Tandem_Repeat 549245 549281 74 + . . scaffold1004 GLEAN mRNA 552211 552240 0.997363 + . ID=CGI_10020787; scaffold1004 TRF Tandem_Repeat 552211 552240 60 + . . scaffold1004 GLEAN mRNA 552251 552397 0.997363 + . ID=CGI_10020787; scaffold1004 TRF Tandem_Repeat 552251 552397 110 + . . scaffold1004 GLEAN mRNA 552251 552397 0.997363 + . ID=CGI_10020787; scaffold1004 TRF Tandem_Repeat 552251 552397 132 + . . scaffold1004 GLEAN mRNA 552250 552397 0.997363 + . ID=CGI_10020787; scaffold1004 TRF Tandem_Repeat 552250 552397 118 + . . scaffold1004 GLEAN mRNA 549194 549245 0.999676 - . ID=CGI_10020788; scaffold1004 TRF Tandem_Repeat 549194 549245 52 + . . scaffold1004 GLEAN mRNA 549245 549281 0.999676 - . ID=CGI_10020788; scaffold1004 TRF Tandem_Repeat 549245 549281 74 + . . scaffold1004 GLEAN mRNA 593059 593092 0.995376 - . ID=CGI_10020791; scaffold1004 TRF Tandem_Repeat 593059 593092 50 + . . scaffold1004 GLEAN mRNA 634169 634624 0.734368 - . ID=CGI_10020793; scaffold1004 TRF Tandem_Repeat 634169 634624 756 + . . scaffold321 GLEAN mRNA 8512 8548 0.789757 + . ID=CGI_10020795; scaffold321 TRF Tandem_Repeat 8512 8548 56 + . . scaffold321 GLEAN mRNA 32501 32544 0.871874 - . ID=CGI_10020797; scaffold321 TRF Tandem_Repeat 32501 32544 61 + . . scaffold321 GLEAN mRNA 123897 123952 0.702385 - . ID=CGI_10020799; scaffold321 TRF Tandem_Repeat 123897 123952 87 + . . scaffold321 GLEAN mRNA 134946 135119 0.702385 - . ID=CGI_10020799; scaffold321 TRF Tandem_Repeat 134946 135119 136 + . . scaffold321 GLEAN mRNA 135342 135471 0.702385 - . ID=CGI_10020799; scaffold321 TRF Tandem_Repeat 135342 135471 97 + . . scaffold321 GLEAN mRNA 136387 136445 0.702385 - . ID=CGI_10020799; scaffold321 TRF Tandem_Repeat 136387 136445 109 + . . scaffold321 GLEAN mRNA 171429 171881 0.996199 - . ID=CGI_10020800; scaffold321 WUBlastX LINE_L1 171429 172001 77 - . . scaffold321 GLEAN mRNA 171525 171881 0.996199 - . ID=CGI_10020800; scaffold321 WUBlastX LINE_L1 171525 172142 42 - . . scaffold321 GLEAN mRNA 264969 266061 0.544851 + . ID=CGI_10020804; scaffold321 TRF Tandem_Repeat 264969 266061 1600 + . . scaffold321 GLEAN mRNA 266266 266303 0.544851 + . ID=CGI_10020804; scaffold321 TRF Tandem_Repeat 266266 266303 67 + . . scaffold321 GLEAN mRNA 266633 266693 0.544851 + . ID=CGI_10020804; scaffold321 TRF Tandem_Repeat 266633 266693 95 + . . scaffold321 GLEAN mRNA 266630 266693 0.544851 + . ID=CGI_10020804; scaffold321 TRF Tandem_Repeat 266630 266693 101 + . . scaffold321 GLEAN mRNA 281690 281719 0.998685 + . ID=CGI_10020805; scaffold321 TRF Tandem_Repeat 281690 281719 60 + . . scaffold321 GLEAN mRNA 287746 287896 0.998685 + . ID=CGI_10020805; scaffold321 TRF Tandem_Repeat 287746 287896 189 + . . scaffold321 GLEAN mRNA 287761 288564 0.998685 + . ID=CGI_10020805; scaffold321 TRF Tandem_Repeat 287761 288564 932 + . . scaffold321 GLEAN mRNA 287902 288564 0.998685 + . ID=CGI_10020805; scaffold321 TRF Tandem_Repeat 287902 288564 862 + . . scaffold321 GLEAN mRNA 289346 290151 0.998685 + . ID=CGI_10020805; scaffold321 TRF Tandem_Repeat 289346 290151 659 + . . scaffold321 GLEAN mRNA 305405 305501 0.997855 - . ID=CGI_10020806; scaffold321 TRF Tandem_Repeat 305405 305501 79 + . . scaffold321 GLEAN mRNA 313397 313493 0.997855 - . ID=CGI_10020806; scaffold321 TRF Tandem_Repeat 313397 313493 79 + . . scaffold321 GLEAN mRNA 314825 315030 0.997855 - . ID=CGI_10020806; scaffold321 TRF Tandem_Repeat 314825 315030 112 + . . scaffold321 GLEAN mRNA 322269 322300 0.997855 - . ID=CGI_10020806; scaffold321 TRF Tandem_Repeat 322269 322300 64 + . . scaffold321 GLEAN mRNA 326235 326276 0.997855 - . ID=CGI_10020806; scaffold321 TRF Tandem_Repeat 326235 326276 84 + . . scaffold321 GLEAN mRNA 376692 376991 1 - . ID=CGI_10020809; scaffold321 WUBlastX LINE_L2 376692 376991 36 - . . scaffold321 GLEAN mRNA 480450 480503 0.439448 - . ID=CGI_10020812; scaffold321 TRF Tandem_Repeat 480450 480503 65 + . . scaffold321 GLEAN mRNA 480450 480506 0.439448 - . ID=CGI_10020812; scaffold321 TRF Tandem_Repeat 480450 480506 80 + . . scaffold321 GLEAN mRNA 479566 480216 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LTR_Gypsy 479566 480216 176 + . . scaffold321 GLEAN mRNA 476954 477064 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LINE_RTE-X 476954 477064 25 - . . scaffold321 GLEAN mRNA 477640 477825 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LINE_RTE-X 477640 477825 64 - . . scaffold321 GLEAN mRNA 478080 478763 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LTR_Gypsy 478080 478763 172 + . . scaffold321 GLEAN mRNA 477411 477629 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LINE_RTE-X 477411 477629 98 - . . scaffold321 GLEAN mRNA 477360 477623 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LINE_RTE-X 477360 477623 44 - . . scaffold321 GLEAN mRNA 477637 477765 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LINE_RTE-X 477637 477765 79 - . . scaffold321 GLEAN mRNA 478257 478757 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LTR_Gypsy 478257 478757 191 + . . scaffold321 GLEAN mRNA 479049 479135 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LTR_Gypsy 479049 479135 36 + . . scaffold321 GLEAN mRNA 476993 477397 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LINE_RTE-X 476993 477397 42 - . . scaffold321 GLEAN mRNA 478260 479111 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LTR_Gypsy 478260 479111 175 + . . scaffold321 GLEAN mRNA 479129 479572 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LTR_Gypsy 479129 479572 463 + . . scaffold321 GLEAN mRNA 477812 478081 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LTR_Gypsy 477812 478081 190 + . . scaffold1244 GLEAN mRNA 18161 18269 0.999999 + . ID=CGI_10020816; scaffold1244 TRF Tandem_Repeat 18161 18269 109 + . . scaffold1244 GLEAN mRNA 92903 92935 0.299139 + . ID=CGI_10020820; scaffold1244 TRF Tandem_Repeat 92903 92935 66 + . . scaffold1244 GLEAN mRNA 100891 101167 0.299139 + . ID=CGI_10020820; scaffold1244 TRF Tandem_Repeat 100891 101167 527 + . . scaffold1244 GLEAN mRNA 99931 100122 0.299139 + . ID=CGI_10020820; scaffold1244 WUBlastX LINE_L1 99931 100122 61 + . . scaffold1244 GLEAN mRNA 99599 99844 0.299139 + . ID=CGI_10020820; scaffold1244 WUBlastX LINE_L1-Tx1 99599 99844 92 + . . scaffold1244 GLEAN mRNA 99832 100119 0.299139 + . ID=CGI_10020820; scaffold1244 WUBlastX LINE_L1-Tx1 99832 100119 56 + . . scaffold1244 GLEAN mRNA 99539 99787 0.299139 + . ID=CGI_10020820; scaffold1244 WUBlastX LINE_L1-Tx1 99539 99787 56 + . . scaffold1244 GLEAN mRNA 100098 100226 0.299139 + . ID=CGI_10020820; scaffold1244 WUBlastX LINE_L1 100098 100226 24 + . . scaffold1244 GLEAN mRNA 99417 99566 0.299139 + . ID=CGI_10020820; scaffold1244 WUBlastX LINE_L1 99417 99566 21 + . . scaffold1244 GLEAN mRNA 99456 99581 0.299139 + . ID=CGI_10020820; scaffold1244 WUBlastX LINE_L1-Tx1 99456 99581 39 + . . scaffold1244 GLEAN mRNA 99486 99644 0.299139 + . ID=CGI_10020820; scaffold1244 WUBlastX LINE_L1-Tx1 99486 99644 49 + . . scaffold1244 GLEAN mRNA 125343 126143 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 125343 126143 886 - . . scaffold1244 GLEAN mRNA 126997 127155 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 126997 127155 80 - . . scaffold1244 GLEAN mRNA 123312 123701 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 123312 123701 83 - . . scaffold1244 GLEAN mRNA 127697 127909 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 127697 127909 125 - . . scaffold1244 GLEAN mRNA 127405 128175 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 127405 128175 110 - . . scaffold1244 GLEAN mRNA 124432 124518 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_ERV1 124432 124518 28 - . . scaffold1244 GLEAN mRNA 123309 123623 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 123309 123623 95 - . . scaffold1244 GLEAN mRNA 124927 125337 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 124927 125337 376 - . . scaffold1244 GLEAN mRNA 126543 126998 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 126543 126998 162 - . . scaffold1244 GLEAN mRNA 122136 123572 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 122136 123572 500 - . . scaffold1244 GLEAN mRNA 126140 126520 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 126140 126520 231 - . . scaffold1244 GLEAN mRNA 124843 125334 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 124843 125334 140 - . . scaffold1244 GLEAN mRNA 124425 124466 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 124425 124466 20 - . . scaffold1244 GLEAN mRNA 121992 122834 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 121992 122834 46 - . . scaffold1244 GLEAN mRNA 125151 126143 0.646055 + . ID=CGI_10020823; scaffold1244 WUBlastX LTR_Gypsy 125151 126143 520 - . . scaffold1244 GLEAN mRNA 235485 235514 0.557975 + . ID=CGI_10020830; scaffold1244 TRF Tandem_Repeat 235485 235514 60 + . . scaffold1244 GLEAN mRNA 283255 283297 0.999676 + . ID=CGI_10020831; scaffold1244 TRF Tandem_Repeat 283255 283297 70 + . . scaffold1244 GLEAN mRNA 318026 318123 0.446078 + . ID=CGI_10020832; scaffold1244 TRF Tandem_Repeat 318026 318123 56 + . . scaffold1244 GLEAN mRNA 320211 320249 0.446078 + . ID=CGI_10020832; scaffold1244 TRF Tandem_Repeat 320211 320249 78 + . . scaffold1244 GLEAN mRNA 490607 490648 0.737996 + . ID=CGI_10020836; scaffold1244 TRF Tandem_Repeat 490607 490648 59 + . . scaffold1244 GLEAN mRNA 543790 544193 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 543790 544193 538 + . . scaffold1244 GLEAN mRNA 545183 545429 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 545183 545429 359 + . . scaffold1244 GLEAN mRNA 545183 545764 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 545183 545764 606 + . . scaffold1244 GLEAN mRNA 545429 545764 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 545429 545764 384 + . . scaffold1244 GLEAN mRNA 546132 546292 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 546132 546292 227 + . . scaffold1244 GLEAN mRNA 555853 555878 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 555853 555878 52 + . . scaffold1244 GLEAN mRNA 561241 561272 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 561241 561272 57 + . . scaffold1244 GLEAN mRNA 566728 566775 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 566728 566775 87 + . . scaffold1244 GLEAN mRNA 573290 573417 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 573290 573417 91 + . . scaffold1244 GLEAN mRNA 572056 572238 0.0392589 - . ID=CGI_10020838; scaffold1244 WUBlastX LINE_Penelope 572056 572238 39 - . . scaffold1244 GLEAN mRNA 571436 572038 0.0392589 - . ID=CGI_10020838; scaffold1244 WUBlastX LINE_Penelope 571436 572038 272 - . . scaffold1244 GLEAN mRNA 572053 572199 0.0392589 - . ID=CGI_10020838; scaffold1244 WUBlastX LINE_Penelope 572053 572199 43 - . . scaffold1244 GLEAN mRNA 570795 571025 0.0392589 - . ID=CGI_10020838; scaffold1244 WUBlastX LINE_Penelope 570795 571025 87 - . . scaffold1244 GLEAN mRNA 570992 572014 0.0392589 - . ID=CGI_10020838; scaffold1244 WUBlastX LINE_Penelope 570992 572014 163 - . . scaffold1244 GLEAN mRNA 571286 572017 0.0392589 - . ID=CGI_10020838; scaffold1244 WUBlastX LINE_Penelope 571286 572017 166 - . . scaffold1244 GLEAN mRNA 570681 570914 0.0392589 - . ID=CGI_10020838; scaffold1244 WUBlastX LINE_Penelope 570681 570914 30 - . . scaffold1244 GLEAN mRNA 572029 572175 0.0392589 - . ID=CGI_10020838; scaffold1244 WUBlastX LINE_Penelope 572029 572175 76 - . . scaffold1244 GLEAN mRNA 589044 589095 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 589044 589095 86 + . . scaffold1244 GLEAN mRNA 599275 599306 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 599275 599306 64 + . . scaffold1244 GLEAN mRNA 605184 605582 0.0392589 - . ID=CGI_10020838; scaffold1244 WUBlastX DNA_IS4EU 605184 605582 64 + . . scaffold1244 GLEAN mRNA 605998 606171 0.0392589 - . ID=CGI_10020838; scaffold1244 WUBlastX DNA_IS4EU 605998 606171 65 + . . scaffold1244 GLEAN mRNA 605091 605582 0.0392589 - . ID=CGI_10020838; scaffold1244 WUBlastX DNA_Kolobok-IS4 605091 605582 41 + . . scaffold1244 GLEAN mRNA 609369 609395 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 609369 609395 54 + . . scaffold1244 GLEAN mRNA 611268 611935 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 611268 611935 900 + . . scaffold1244 GLEAN mRNA 615851 615900 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 615851 615900 91 + . . scaffold1244 GLEAN mRNA 625367 625409 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 625367 625409 54 + . . scaffold1244 GLEAN mRNA 627382 627453 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 627382 627453 58 + . . scaffold1244 GLEAN mRNA 657063 657095 0.834262 - . ID=CGI_10020840; scaffold1244 TRF Tandem_Repeat 657063 657095 66 + . . scaffold1244 GLEAN mRNA 660145 660665 0.834262 - . ID=CGI_10020840; scaffold1244 TRF Tandem_Repeat 660145 660665 493 + . . scaffold1244 GLEAN mRNA 660133 661092 0.834262 - . ID=CGI_10020840; scaffold1244 TRF Tandem_Repeat 660133 661092 621 + . . scaffold1244 GLEAN mRNA 660124 662002 0.834262 - . ID=CGI_10020840; scaffold1244 TRF Tandem_Repeat 660124 662002 907 + . . scaffold1244 GLEAN mRNA 660727 661083 0.834262 - . ID=CGI_10020840; scaffold1244 TRF Tandem_Repeat 660727 661083 261 + . . scaffold1244 GLEAN mRNA 661627 662005 0.834262 - . ID=CGI_10020840; scaffold1244 TRF Tandem_Repeat 661627 662005 495 + . . scaffold361 GLEAN mRNA 16328 16354 1 - . ID=CGI_10020842; scaffold361 TRF Tandem_Repeat 16328 16354 54 + . . scaffold361 GLEAN mRNA 113284 113328 0.541902 - . ID=CGI_10020845; scaffold361 TRF Tandem_Repeat 113284 113328 90 + . . scaffold361 GLEAN mRNA 128699 128724 0.541902 - . ID=CGI_10020845; scaffold361 TRF Tandem_Repeat 128699 128724 52 + . . scaffold361 GLEAN mRNA 162212 162403 0.998439 - . ID=CGI_10020846; scaffold361 WUBlastX LINE_L1-Tx1 162212 162403 45 + . . scaffold361 GLEAN mRNA 167631 167872 0.80745 + . ID=CGI_10020847; scaffold361 TRF Tandem_Repeat 167631 167872 213 + . . scaffold361 GLEAN mRNA 168098 168254 0.80745 + . ID=CGI_10020847; scaffold361 TRF Tandem_Repeat 168098 168254 107 + . . scaffold361 GLEAN mRNA 172119 172836 0.80745 + . ID=CGI_10020847; scaffold361 TRF Tandem_Repeat 172119 172836 900 + . . scaffold361 GLEAN mRNA 172119 172907 0.80745 + . ID=CGI_10020847; scaffold361 TRF Tandem_Repeat 172119 172907 519 + . . scaffold361 GLEAN mRNA 174391 174974 0.80745 + . ID=CGI_10020847; scaffold361 TRF Tandem_Repeat 174391 174974 719 + . . scaffold361 GLEAN mRNA 177225 177378 0.80745 + . ID=CGI_10020847; scaffold361 TRF Tandem_Repeat 177225 177378 227 + . . scaffold361 GLEAN mRNA 178867 179104 0.80745 + . ID=CGI_10020847; scaffold361 TRF Tandem_Repeat 178867 179104 377 + . . scaffold361 GLEAN mRNA 183523 183764 0.80745 + . ID=CGI_10020847; scaffold361 TRF Tandem_Repeat 183523 183764 358 + . . scaffold361 GLEAN mRNA 179421 180769 0.80745 + . ID=CGI_10020847; scaffold361 TRF Tandem_Repeat 179421 180769 2078 + . . scaffold361 GLEAN mRNA 195056 195970 0.455906 - . ID=CGI_10020848; scaffold361 TRF Tandem_Repeat 195056 195970 572 + . . scaffold361 GLEAN mRNA 195056 195967 0.455906 - . ID=CGI_10020848; scaffold361 TRF Tandem_Repeat 195056 195967 667 + . . scaffold361 GLEAN mRNA 197547 197591 0.455906 - . ID=CGI_10020848; scaffold361 TRF Tandem_Repeat 197547 197591 90 + . . scaffold361 GLEAN mRNA 200634 200825 0.455906 - . ID=CGI_10020848; scaffold361 TRF Tandem_Repeat 200634 200825 278 + . . scaffold361 GLEAN mRNA 207975 208312 0.455906 - . ID=CGI_10020848; scaffold361 TRF Tandem_Repeat 207975 208312 595 + . . scaffold361 GLEAN mRNA 215691 215741 0.455906 - . ID=CGI_10020848; scaffold361 TRF Tandem_Repeat 215691 215741 102 + . . scaffold361 GLEAN mRNA 220216 220263 0.455906 - . ID=CGI_10020848; scaffold361 TRF Tandem_Repeat 220216 220263 87 + . . scaffold361 GLEAN mRNA 221877 222106 0.455906 - . ID=CGI_10020848; scaffold361 TRF Tandem_Repeat 221877 222106 140 + . . scaffold361 GLEAN mRNA 197547 197591 0.848758 + . ID=CGI_10020849; scaffold361 TRF Tandem_Repeat 197547 197591 90 + . . scaffold361 GLEAN mRNA 200634 200825 0.848758 + . ID=CGI_10020849; scaffold361 TRF Tandem_Repeat 200634 200825 278 + . . scaffold361 GLEAN mRNA 207975 208312 0.999676 + . ID=CGI_10020850; scaffold361 TRF Tandem_Repeat 207975 208312 595 + . . scaffold361 GLEAN mRNA 240999 241129 0.85988 - . ID=CGI_10020852; scaffold361 TRF Tandem_Repeat 240999 241129 69 + . . scaffold361 GLEAN mRNA 243577 243775 0.85988 - . ID=CGI_10020852; scaffold361 TRF Tandem_Repeat 243577 243775 308 + . . scaffold361 GLEAN mRNA 245057 245519 0.85988 - . ID=CGI_10020852; scaffold361 TRF Tandem_Repeat 245057 245519 784 + . . scaffold361 GLEAN mRNA 251692 252027 1 + . ID=CGI_10020853; scaffold361 TRF Tandem_Repeat 251692 252027 405 + . . scaffold361 GLEAN mRNA 251752 252937 1 + . ID=CGI_10020853; scaffold361 TRF Tandem_Repeat 251752 252937 1602 + . . scaffold361 GLEAN mRNA 294993 295043 0.400231 + . ID=CGI_10020856; scaffold361 TRF Tandem_Repeat 294993 295043 102 + . . scaffold361 GLEAN mRNA 296484 296954 0.400231 + . ID=CGI_10020856; scaffold361 TRF Tandem_Repeat 296484 296954 557 + . . scaffold361 GLEAN mRNA 308420 308534 0.434065 - . ID=CGI_10020857; scaffold361 TRF Tandem_Repeat 308420 308534 115 + . . scaffold361 GLEAN mRNA 311555 311833 0.434065 - . ID=CGI_10020857; scaffold361 TRF Tandem_Repeat 311555 311833 438 + . . scaffold361 GLEAN mRNA 323101 323147 1 + . ID=CGI_10020858; scaffold361 TRF Tandem_Repeat 323101 323147 87 + . . scaffold361 GLEAN mRNA 325059 325532 1 + . ID=CGI_10020858; scaffold361 TRF Tandem_Repeat 325059 325532 772 + . . scaffold361 GLEAN mRNA 325059 325532 0.80562 - . ID=CGI_10020859; scaffold361 TRF Tandem_Repeat 325059 325532 772 + . . scaffold361 GLEAN mRNA 333925 334642 0.874383 - . ID=CGI_10020861; scaffold361 TRF Tandem_Repeat 333925 334642 1182 + . . scaffold361 GLEAN mRNA 337116 337446 0.874383 - . ID=CGI_10020861; scaffold361 TRF Tandem_Repeat 337116 337446 581 + . . scaffold361 GLEAN mRNA 340738 341005 0.874383 - . ID=CGI_10020861; scaffold361 TRF Tandem_Repeat 340738 341005 410 + . . scaffold361 GLEAN mRNA 342183 342925 0.874383 - . ID=CGI_10020861; scaffold361 TRF Tandem_Repeat 342183 342925 721 + . . scaffold361 GLEAN mRNA 343427 343792 0.874383 - . ID=CGI_10020861; scaffold361 WUBlastX LINE_Penelope 343427 343792 143 - . . scaffold361 GLEAN mRNA 345726 346522 0.874383 - . ID=CGI_10020861; scaffold361 TRF Tandem_Repeat 345726 346522 1427 + . . scaffold361 GLEAN mRNA 350693 350745 0.874383 - . ID=CGI_10020861; scaffold361 TRF Tandem_Repeat 350693 350745 63 + . . scaffold361 GLEAN mRNA 350690 350745 0.874383 - . ID=CGI_10020861; scaffold361 TRF Tandem_Repeat 350690 350745 58 + . . scaffold361 GLEAN mRNA 387816 388655 0.874383 - . ID=CGI_10020861; scaffold361 TRF Tandem_Repeat 387816 388655 1123 + . . scaffold361 GLEAN mRNA 522785 522911 1 + . ID=CGI_10020867; scaffold361 TRF Tandem_Repeat 522785 522911 67 + . . scaffold361 GLEAN mRNA 535763 535817 0.999949 - . ID=CGI_10020869; scaffold361 TRF Tandem_Repeat 535763 535817 101 + . . scaffold361 GLEAN mRNA 560490 560536 0.999234 + . ID=CGI_10020870; scaffold361 TRF Tandem_Repeat 560490 560536 85 + . . scaffold361 GLEAN mRNA 567153 567252 0.999234 + . ID=CGI_10020870; scaffold361 TRF Tandem_Repeat 567153 567252 200 + . . scaffold361 GLEAN mRNA 590025 590111 0.999234 + . ID=CGI_10020870; scaffold361 TRF Tandem_Repeat 590025 590111 95 + . . scaffold361 GLEAN mRNA 591228 591284 0.999234 + . ID=CGI_10020870; scaffold361 TRF Tandem_Repeat 591228 591284 98 + . . scaffold361 GLEAN mRNA 592810 592842 0.999234 + . ID=CGI_10020870; scaffold361 TRF Tandem_Repeat 592810 592842 66 + . . scaffold361 GLEAN mRNA 647819 648611 0.988911 - . ID=CGI_10020874; scaffold361 TRF Tandem_Repeat 647819 648611 1268 + . . scaffold361 GLEAN mRNA 650673 651177 0.988911 - . ID=CGI_10020874; scaffold361 TRF Tandem_Repeat 650673 651177 295 + . . scaffold332 GLEAN mRNA 122077 122120 1 - . ID=CGI_10020878; scaffold332 TRF Tandem_Repeat 122077 122120 88 + . . scaffold332 GLEAN mRNA 140635 140668 1 - . ID=CGI_10020879; scaffold332 TRF Tandem_Repeat 140635 140668 52 + . . scaffold332 GLEAN mRNA 283359 284297 0.40014 - . ID=CGI_10020880; scaffold332 WUBlastX LINE_RTE-X 283359 284297 585 + . . scaffold332 GLEAN mRNA 284345 285211 0.40014 - . ID=CGI_10020880; scaffold332 WUBlastX LINE_RTE-X 284345 285211 344 + . . scaffold332 GLEAN mRNA 283350 284498 0.40014 - . ID=CGI_10020880; scaffold332 WUBlastX LINE_RTE-X 283350 284498 385 + . . scaffold332 GLEAN mRNA 337828 337890 0.557354 - . ID=CGI_10020882; scaffold332 TRF Tandem_Repeat 337828 337890 56 + . . scaffold332 GLEAN mRNA 359802 359911 0.999624 - . ID=CGI_10020883; scaffold332 TRF Tandem_Repeat 359802 359911 87 + . . scaffold332 GLEAN mRNA 368188 368364 1 - . ID=CGI_10020884; scaffold332 WUBlastX DNA_TcMar-Marin 368188 368364 58 - . . scaffold332 GLEAN mRNA 368424 368492 1 - . ID=CGI_10020884; scaffold332 WUBlastX DNA_TcMar-Marin 368424 368492 24 - . . scaffold332 GLEAN mRNA 368182 368427 1 - . ID=CGI_10020884; scaffold332 WUBlastX DNA_TcMar-Marin 368182 368427 34 - . . scaffold332 GLEAN mRNA 368609 368776 1 - . ID=CGI_10020884; scaffold332 WUBlastX DNA_TcMar-Marin 368609 368776 36 - . . scaffold332 GLEAN mRNA 372921 372960 0.999999 + . ID=CGI_10020885; scaffold332 TRF Tandem_Repeat 372921 372960 71 + . . scaffold332 GLEAN mRNA 373058 373111 0.999999 + . ID=CGI_10020885; scaffold332 TRF Tandem_Repeat 373058 373111 108 + . . scaffold332 GLEAN mRNA 393118 393168 0.999999 + . ID=CGI_10020885; scaffold332 TRF Tandem_Repeat 393118 393168 102 + . . scaffold332 GLEAN mRNA 393272 393312 0.999999 + . ID=CGI_10020885; scaffold332 TRF Tandem_Repeat 393272 393312 82 + . . scaffold332 GLEAN mRNA 404655 407564 0.544643 + . ID=CGI_10020886; scaffold332 WUBlastX LINE_L1-Tx1 404655 407564 1091 + . . scaffold332 GLEAN mRNA 408121 408456 0.544643 + . ID=CGI_10020886; scaffold332 WUBlastX LINE_L1-Tx1 408121 408456 20 + . . scaffold332 GLEAN mRNA 404610 404897 0.544643 + . ID=CGI_10020886; scaffold332 WUBlastX LINE_Zorro 404610 404897 24 + . . scaffold332 GLEAN mRNA 411163 411621 0.544643 + . ID=CGI_10020886; scaffold332 WUBlastX LTR_Ngaro 411163 411621 48 - . . scaffold332 GLEAN mRNA 411163 411711 0.544643 + . ID=CGI_10020886; scaffold332 WUBlastX LTR_Ngaro 411163 411711 31 - . . scaffold332 GLEAN mRNA 546554 547100 1 + . ID=CGI_10020890; scaffold332 TRF Tandem_Repeat 546554 547100 639 + . . scaffold332 GLEAN mRNA 547988 548233 1 + . ID=CGI_10020890; scaffold332 TRF Tandem_Repeat 547988 548233 312 + . . scaffold332 GLEAN mRNA 618499 618540 0.999676 - . ID=CGI_10020894; scaffold332 TRF Tandem_Repeat 618499 618540 59 + . . scaffold332 GLEAN mRNA 619019 619044 0.999676 - . ID=CGI_10020894; scaffold332 TRF Tandem_Repeat 619019 619044 52 + . . scaffold332 GLEAN mRNA 656694 656779 0.999989 - . ID=CGI_10020895; scaffold332 TRF Tandem_Repeat 656694 656779 95 + . . scaffold332 GLEAN mRNA 656690 656771 0.999989 - . ID=CGI_10020895; scaffold332 TRF Tandem_Repeat 656690 656771 137 + . . scaffold1897 GLEAN mRNA 117485 117522 1 - . ID=CGI_10020906; scaffold1897 TRF Tandem_Repeat 117485 117522 76 + . . scaffold1897 GLEAN mRNA 194147 194576 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 194147 194576 572 + . . scaffold1897 GLEAN mRNA 198132 198193 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 198132 198193 117 + . . scaffold1897 GLEAN mRNA 202122 202281 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 202122 202281 176 + . . scaffold1897 GLEAN mRNA 203850 203899 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 203850 203899 64 + . . scaffold1897 GLEAN mRNA 210510 210559 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 210510 210559 100 + . . scaffold1897 GLEAN mRNA 200054 200644 0.317357 - . ID=CGI_10020917; scaffold1897 WUBlastX LINE_CR1 200054 200644 104 + . . scaffold1897 GLEAN mRNA 200171 201295 0.317357 - . ID=CGI_10020917; scaffold1897 WUBlastX LINE_RTE-X 200171 201295 333 + . . scaffold1897 GLEAN mRNA 201296 201643 0.317357 - . ID=CGI_10020917; scaffold1897 WUBlastX LINE_RTE-X 201296 201643 69 + . . scaffold1897 GLEAN mRNA 201622 201771 0.317357 - . ID=CGI_10020917; scaffold1897 WUBlastX LINE_RTE-X 201622 201771 50 + . . scaffold1897 GLEAN mRNA 201610 201840 0.317357 - . ID=CGI_10020917; scaffold1897 WUBlastX LINE_RTE-X 201610 201840 41 + . . scaffold1897 GLEAN mRNA 218822 219218 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 218822 219218 370 + . . scaffold1897 GLEAN mRNA 218822 219218 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 218822 219218 286 + . . scaffold1897 GLEAN mRNA 222286 222330 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 222286 222330 54 + . . scaffold1897 GLEAN mRNA 222287 222330 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 222287 222330 61 + . . scaffold1897 GLEAN mRNA 222448 222817 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 222448 222817 287 + . . scaffold1897 GLEAN mRNA 222448 222817 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 222448 222817 357 + . . scaffold1897 GLEAN mRNA 234486 234823 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 234486 234823 388 + . . scaffold1897 GLEAN mRNA 235230 235296 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 235230 235296 107 + . . scaffold1897 GLEAN mRNA 239753 240715 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 239753 240715 1351 + . . scaffold1897 GLEAN mRNA 259225 259294 0.999391 - . ID=CGI_10020918; scaffold1897 TRF Tandem_Repeat 259225 259294 140 + . . scaffold1897 GLEAN mRNA 262547 262624 0.999391 - . ID=CGI_10020918; scaffold1897 TRF Tandem_Repeat 262547 262624 156 + . . scaffold1897 GLEAN mRNA 266929 266999 0.679214 + . ID=CGI_10020919; scaffold1897 TRF Tandem_Repeat 266929 266999 142 + . . scaffold1897 GLEAN mRNA 268985 269056 0.679214 + . ID=CGI_10020919; scaffold1897 TRF Tandem_Repeat 268985 269056 65 + . . scaffold1897 GLEAN mRNA 280886 280936 1 + . ID=CGI_10020920; scaffold1897 TRF Tandem_Repeat 280886 280936 102 + . . scaffold1897 GLEAN mRNA 282606 282683 1 + . ID=CGI_10020920; scaffold1897 TRF Tandem_Repeat 282606 282683 147 + . . scaffold1897 GLEAN mRNA 311433 311591 0.997978 - . ID=CGI_10020922; scaffold1897 TRF Tandem_Repeat 311433 311591 210 + . . scaffold1897 GLEAN mRNA 311617 311804 0.997978 - . ID=CGI_10020922; scaffold1897 TRF Tandem_Repeat 311617 311804 243 + . . scaffold1897 GLEAN mRNA 311617 311806 0.997978 - . ID=CGI_10020922; scaffold1897 TRF Tandem_Repeat 311617 311806 150 + . . scaffold1897 GLEAN mRNA 311884 311970 0.997978 - . ID=CGI_10020922; scaffold1897 TRF Tandem_Repeat 311884 311970 106 + . . scaffold1897 GLEAN mRNA 314618 314776 0.997978 - . ID=CGI_10020922; scaffold1897 TRF Tandem_Repeat 314618 314776 210 + . . scaffold1897 GLEAN mRNA 314802 314989 0.997978 - . ID=CGI_10020922; scaffold1897 TRF Tandem_Repeat 314802 314989 243 + . . scaffold1897 GLEAN mRNA 314802 314991 0.997978 - . ID=CGI_10020922; scaffold1897 TRF Tandem_Repeat 314802 314991 150 + . . scaffold1897 GLEAN mRNA 315069 315155 0.997978 - . ID=CGI_10020922; scaffold1897 TRF Tandem_Repeat 315069 315155 106 + . . scaffold1897 GLEAN mRNA 331383 331430 1 + . ID=CGI_10020924; scaffold1897 TRF Tandem_Repeat 331383 331430 78 + . . scaffold1897 GLEAN mRNA 335296 335337 1 + . ID=CGI_10020925; scaffold1897 TRF Tandem_Repeat 335296 335337 84 + . . scaffold1897 GLEAN mRNA 340697 340722 1 + . ID=CGI_10020925; scaffold1897 TRF Tandem_Repeat 340697 340722 52 + . . scaffold1897 GLEAN mRNA 340722 340770 1 + . ID=CGI_10020925; scaffold1897 TRF Tandem_Repeat 340722 340770 98 + . . scaffold1897 GLEAN mRNA 375340 375377 0.579814 + . ID=CGI_10020927; scaffold1897 TRF Tandem_Repeat 375340 375377 58 + . . scaffold1897 GLEAN mRNA 384676 384746 0.997194 - . ID=CGI_10020928; scaffold1897 TRF Tandem_Repeat 384676 384746 64 + . . scaffold1897 GLEAN mRNA 384692 384829 0.997194 - . ID=CGI_10020928; scaffold1897 TRF Tandem_Repeat 384692 384829 77 + . . scaffold1897 GLEAN mRNA 384676 384746 0.997194 - . ID=CGI_10020928; scaffold1897 TRF Tandem_Repeat 384676 384746 67 + . . scaffold1897 GLEAN mRNA 384674 384756 0.997194 - . ID=CGI_10020928; scaffold1897 TRF Tandem_Repeat 384674 384756 59 + . . scaffold1897 GLEAN mRNA 384613 384760 0.997194 - . ID=CGI_10020928; scaffold1897 TRF Tandem_Repeat 384613 384760 67 + . . scaffold1897 GLEAN mRNA 451017 451065 0.708318 + . ID=CGI_10020932; scaffold1897 TRF Tandem_Repeat 451017 451065 75 + . . scaffold1897 GLEAN mRNA 465061 465104 0.998438 - . ID=CGI_10020933; scaffold1897 TRF Tandem_Repeat 465061 465104 56 + . . scaffold1897 GLEAN mRNA 480290 480372 0.998438 - . ID=CGI_10020933; scaffold1897 TRF Tandem_Repeat 480290 480372 112 + . . scaffold1897 GLEAN mRNA 484899 484976 0.998438 - . ID=CGI_10020933; scaffold1897 TRF Tandem_Repeat 484899 484976 129 + . . scaffold1897 GLEAN mRNA 480290 480372 0.999675 + . ID=CGI_10020934; scaffold1897 TRF Tandem_Repeat 480290 480372 112 + . . scaffold1897 GLEAN mRNA 484899 484976 0.999675 + . ID=CGI_10020934; scaffold1897 TRF Tandem_Repeat 484899 484976 129 + . . scaffold1897 GLEAN mRNA 493697 493737 0.999675 + . ID=CGI_10020934; scaffold1897 TRF Tandem_Repeat 493697 493737 82 + . . scaffold1897 GLEAN mRNA 504244 504269 0.999675 + . ID=CGI_10020934; scaffold1897 TRF Tandem_Repeat 504244 504269 52 + . . scaffold1897 GLEAN mRNA 526000 526482 0.995373 + . ID=CGI_10020936; scaffold1897 WUBlastX DNA_hAT-hATw 526000 526482 25 + . . scaffold1897 GLEAN mRNA 538822 539352 0.528485 - . ID=CGI_10020937; scaffold1897 WUBlastX LINE_L1 538822 539352 24 - . . scaffold1897 GLEAN mRNA 548419 548465 0.810743 - . ID=CGI_10020938; scaffold1897 TRF Tandem_Repeat 548419 548465 85 + . . scaffold1897 GLEAN mRNA 550201 550239 0.810743 - . ID=CGI_10020938; scaffold1897 TRF Tandem_Repeat 550201 550239 78 + . . scaffold1897 GLEAN mRNA 551558 552155 0.810743 - . ID=CGI_10020938; scaffold1897 TRF Tandem_Repeat 551558 552155 780 + . . scaffold1736 GLEAN mRNA 23195 23443 0.947251 + . ID=CGI_10020947; scaffold1736 WUBlastX DNA_hAT-Blackja 23195 23443 66 - . . scaffold1736 GLEAN mRNA 111220 111309 0.540998 - . ID=CGI_10020953; scaffold1736 TRF Tandem_Repeat 111220 111309 146 + . . scaffold1736 GLEAN mRNA 116997 117163 0.540998 - . ID=CGI_10020953; scaffold1736 TRF Tandem_Repeat 116997 117163 180 + . . scaffold1736 GLEAN mRNA 167355 167470 0.835567 - . ID=CGI_10020954; scaffold1736 TRF Tandem_Repeat 167355 167470 214 + . . scaffold1736 GLEAN mRNA 168396 168444 0.835567 - . ID=CGI_10020954; scaffold1736 TRF Tandem_Repeat 168396 168444 98 + . . scaffold1736 GLEAN mRNA 180234 180279 0.835567 - . ID=CGI_10020954; scaffold1736 TRF Tandem_Repeat 180234 180279 92 + . . scaffold1736 GLEAN mRNA 182275 182323 0.835567 - . ID=CGI_10020954; scaffold1736 TRF Tandem_Repeat 182275 182323 98 + . . scaffold1736 GLEAN mRNA 184657 184882 0.835567 - . ID=CGI_10020954; scaffold1736 TRF Tandem_Repeat 184657 184882 153 + . . scaffold1736 GLEAN mRNA 186332 186404 0.835567 - . ID=CGI_10020954; scaffold1736 TRF Tandem_Repeat 186332 186404 146 + . . scaffold1736 GLEAN mRNA 188234 188308 0.835567 - . ID=CGI_10020954; scaffold1736 TRF Tandem_Repeat 188234 188308 132 + . . scaffold1736 GLEAN mRNA 274150 274206 0.999662 + . ID=CGI_10020962; scaffold1736 TRF Tandem_Repeat 274150 274206 107 + . . scaffold1736 GLEAN mRNA 271881 272300 0.999662 + . ID=CGI_10020962; scaffold1736 WUBlastX LINE_L1-Tx1 271881 272300 30 + . . scaffold1736 GLEAN mRNA 272605 272766 0.999662 + . ID=CGI_10020962; scaffold1736 WUBlastX LINE_L1-Tx1 272605 272766 22 + . . scaffold1736 GLEAN mRNA 341945 342006 1 - . ID=CGI_10020965; scaffold1736 TRF Tandem_Repeat 341945 342006 106 + . . scaffold1736 GLEAN mRNA 345236 345304 1 - . ID=CGI_10020965; scaffold1736 TRF Tandem_Repeat 345236 345304 138 + . . scaffold1736 GLEAN mRNA 372583 372963 0.972064 - . ID=CGI_10020967; scaffold1736 WUBlastX LINE_R1 372583 372963 28 - . . scaffold1736 GLEAN mRNA 432024 432096 0.999921 - . ID=CGI_10020973; scaffold1736 TRF Tandem_Repeat 432024 432096 146 + . . scaffold1736 GLEAN mRNA 433096 433139 0.999921 - . ID=CGI_10020973; scaffold1736 TRF Tandem_Repeat 433096 433139 88 + . . scaffold1736 GLEAN mRNA 440670 441958 0.997877 + . ID=CGI_10020974; scaffold1736 TRF Tandem_Repeat 440670 441958 1877 + . . scaffold1736 GLEAN mRNA 452350 452384 0.997877 + . ID=CGI_10020974; scaffold1736 TRF Tandem_Repeat 452350 452384 52 + . . scaffold1736 GLEAN mRNA 452589 453343 0.997877 + . ID=CGI_10020974; scaffold1736 TRF Tandem_Repeat 452589 453343 1032 + . . scaffold1736 GLEAN mRNA 473685 473740 0.999415 + . ID=CGI_10020977; scaffold1736 TRF Tandem_Repeat 473685 473740 112 + . . scaffold1736 GLEAN mRNA 501155 501197 1 + . ID=CGI_10020979; scaffold1736 TRF Tandem_Repeat 501155 501197 86 + . . scaffold1736 GLEAN mRNA 505140 505231 0.999676 + . ID=CGI_10020980; scaffold1736 TRF Tandem_Repeat 505140 505231 107 + . . scaffold1736 GLEAN mRNA 505308 505425 0.999676 + . ID=CGI_10020980; scaffold1736 TRF Tandem_Repeat 505308 505425 105 + . . scaffold1736 GLEAN mRNA 505477 505603 0.999676 + . ID=CGI_10020980; scaffold1736 TRF Tandem_Repeat 505477 505603 121 + . . scaffold1736 GLEAN mRNA 505695 505788 0.999676 + . ID=CGI_10020980; scaffold1736 TRF Tandem_Repeat 505695 505788 91 + . . scaffold1736 GLEAN mRNA 546209 546266 0.999797 + . ID=CGI_10020984; scaffold1736 TRF Tandem_Repeat 546209 546266 116 + . . scaffold1736 GLEAN mRNA 582083 582132 0.511735 + . ID=CGI_10020986; scaffold1736 TRF Tandem_Repeat 582083 582132 100 + . . scaffold1736 GLEAN mRNA 619997 621006 0.537791 - . ID=CGI_10020987; scaffold1736 TRF Tandem_Repeat 619997 621006 742 + . . scaffold1736 GLEAN mRNA 619997 621001 0.537791 - . ID=CGI_10020987; scaffold1736 TRF Tandem_Repeat 619997 621001 742 + . . scaffold1736 GLEAN mRNA 624788 624819 0.537791 - . ID=CGI_10020987; scaffold1736 TRF Tandem_Repeat 624788 624819 64 + . . scaffold1736 GLEAN mRNA 627538 627669 0.537791 - . ID=CGI_10020987; scaffold1736 WUBlastX LINE_RTE-X 627538 627669 46 - . . scaffold1736 GLEAN mRNA 627627 627938 0.537791 - . ID=CGI_10020987; scaffold1736 WUBlastX LINE_RTE-X 627627 627938 26 - . . scaffold1736 GLEAN mRNA 627053 627490 0.537791 - . ID=CGI_10020987; scaffold1736 WUBlastX LINE_RTE-X 627053 627490 56 - . . scaffold1736 GLEAN mRNA 627627 627869 0.537791 - . ID=CGI_10020987; scaffold1736 WUBlastX LINE_RTE-X 627627 627869 67 - . . scaffold1736 GLEAN mRNA 627197 627538 0.537791 - . ID=CGI_10020987; scaffold1736 WUBlastX LINE_RTE-X 627197 627538 64 - . . scaffold1736 GLEAN mRNA 627585 627815 0.537791 - . ID=CGI_10020987; scaffold1736 WUBlastX LINE_RTE-X 627585 627815 82 - . . scaffold546 GLEAN mRNA 25063 25426 0.999351 + . ID=CGI_10020990; scaffold546 TRF Tandem_Repeat 25063 25426 539 + . . scaffold546 GLEAN mRNA 26207 26316 0.999351 + . ID=CGI_10020990; scaffold546 TRF Tandem_Repeat 26207 26316 202 + . . scaffold546 GLEAN mRNA 32800 33181 0.999351 + . ID=CGI_10020990; scaffold546 TRF Tandem_Repeat 32800 33181 366 + . . scaffold546 GLEAN mRNA 37845 38040 0.999351 + . ID=CGI_10020990; scaffold546 TRF Tandem_Repeat 37845 38040 374 + . . scaffold546 GLEAN mRNA 39666 39710 0.999351 + . ID=CGI_10020990; scaffold546 TRF Tandem_Repeat 39666 39710 90 + . . scaffold546 GLEAN mRNA 44816 45160 0.999351 + . ID=CGI_10020990; scaffold546 TRF Tandem_Repeat 44816 45160 484 + . . scaffold546 GLEAN mRNA 47242 47623 0.999351 + . ID=CGI_10020990; scaffold546 TRF Tandem_Repeat 47242 47623 534 + . . scaffold546 GLEAN mRNA 36496 36798 0.999351 + . ID=CGI_10020990; scaffold546 WUBlastX LINE_RTE-X 36496 36798 27 - . . scaffold546 GLEAN mRNA 36454 36750 0.999351 + . ID=CGI_10020990; scaffold546 WUBlastX LINE_RTE-X 36454 36750 89 - . . scaffold546 GLEAN mRNA 36487 36726 0.999351 + . ID=CGI_10020990; scaffold546 WUBlastX LINE_RTE-X 36487 36726 107 - . . scaffold546 GLEAN mRNA 32517 32943 0.999351 + . ID=CGI_10020990; scaffold546 TRF Tandem_Repeat 32517 32943 271 + . . scaffold546 GLEAN mRNA 32517 32941 0.999351 + . ID=CGI_10020990; scaffold546 TRF Tandem_Repeat 32517 32941 292 + . . scaffold546 GLEAN mRNA 32517 32943 0.999351 + . ID=CGI_10020990; scaffold546 TRF Tandem_Repeat 32517 32943 178 + . . scaffold546 GLEAN mRNA 78435 78462 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 78435 78462 56 + . . scaffold546 GLEAN mRNA 79195 79839 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 79195 79839 1125 + . . scaffold546 GLEAN mRNA 87859 87918 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 87859 87918 57 + . . scaffold546 GLEAN mRNA 88104 88481 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 88104 88481 503 + . . scaffold546 GLEAN mRNA 90129 91447 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 90129 91447 2154 + . . scaffold546 GLEAN mRNA 90129 91447 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 90129 91447 2124 + . . scaffold546 GLEAN mRNA 90129 91447 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 90129 91447 2137 + . . scaffold546 GLEAN mRNA 96003 96310 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 96003 96310 221 + . . scaffold546 GLEAN mRNA 96008 96653 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 96008 96653 421 + . . scaffold546 GLEAN mRNA 96064 97149 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 96064 97149 888 + . . scaffold546 GLEAN mRNA 96003 97082 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 96003 97082 266 + . . scaffold546 GLEAN mRNA 101995 102330 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 101995 102330 584 + . . scaffold546 GLEAN mRNA 103460 103798 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 103460 103798 669 + . . scaffold546 GLEAN mRNA 113193 113270 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 113193 113270 52 + . . scaffold546 GLEAN mRNA 115015 115040 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 115015 115040 52 + . . scaffold546 GLEAN mRNA 97898 98861 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 97898 98861 1554 + . . scaffold546 GLEAN mRNA 114137 114898 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 114137 114898 1013 + . . scaffold546 GLEAN mRNA 129607 129658 1 + . ID=CGI_10020994; scaffold546 TRF Tandem_Repeat 129607 129658 104 + . . scaffold546 GLEAN mRNA 130550 131162 1 + . ID=CGI_10020994; scaffold546 TRF Tandem_Repeat 130550 131162 1156 + . . scaffold546 GLEAN mRNA 141672 142264 0.999871 - . ID=CGI_10020995; scaffold546 TRF Tandem_Repeat 141672 142264 872 + . . scaffold546 GLEAN mRNA 142364 142736 0.999871 - . ID=CGI_10020995; scaffold546 TRF Tandem_Repeat 142364 142736 586 + . . scaffold546 GLEAN mRNA 144432 145430 0.999871 - . ID=CGI_10020995; scaffold546 WUBlastX LINE_L2 144432 145430 29 + . . scaffold546 GLEAN mRNA 146713 147087 0.999871 - . ID=CGI_10020995; scaffold546 WUBlastX LINE_L1-Tx1 146713 147087 156 + . . scaffold546 GLEAN mRNA 144591 145736 0.999871 - . ID=CGI_10020995; scaffold546 WUBlastX LINE_L1-Tx1 144591 145736 812 + . . scaffold546 GLEAN mRNA 145730 146524 0.999871 - . ID=CGI_10020995; scaffold546 WUBlastX LINE_L1-Tx1 145730 146524 102 + . . scaffold546 GLEAN mRNA 147078 148313 0.999871 - . ID=CGI_10020995; scaffold546 WUBlastX LINE_L1 147078 148313 186 + . . scaffold546 GLEAN mRNA 201187 201406 0.84036 + . ID=CGI_10020997; scaffold546 TRF Tandem_Repeat 201187 201406 224 + . . scaffold546 GLEAN mRNA 201187 201406 0.84036 + . ID=CGI_10020997; scaffold546 TRF Tandem_Repeat 201187 201406 296 + . . scaffold546 GLEAN mRNA 204159 204682 0.84036 + . ID=CGI_10020997; scaffold546 TRF Tandem_Repeat 204159 204682 724 + . . scaffold546 GLEAN mRNA 249274 251256 0.586602 - . ID=CGI_10020999; scaffold546 WUBlastX LTR_Gypsy 249274 251256 584 - . . scaffold546 GLEAN mRNA 394012 394245 0.945058 - . ID=CGI_10021003; scaffold546 WUBlastX DNA_hAT-Tip100 394012 394245 116 - . . scaffold546 GLEAN mRNA 394018 394299 0.945058 - . ID=CGI_10021003; scaffold546 WUBlastX DNA_hAT-Tip100 394018 394299 41 - . . scaffold546 GLEAN mRNA 431557 431611 1 - . ID=CGI_10021005; scaffold546 TRF Tandem_Repeat 431557 431611 74 + . . scaffold546 GLEAN mRNA 532626 532793 0.372451 + . ID=CGI_10021008; scaffold546 TRF Tandem_Repeat 532626 532793 282 + . . scaffold546 GLEAN mRNA 541934 542118 0.372451 + . ID=CGI_10021008; scaffold546 TRF Tandem_Repeat 541934 542118 316 + . . scaffold546 GLEAN mRNA 542108 542517 0.372451 + . ID=CGI_10021008; scaffold546 TRF Tandem_Repeat 542108 542517 437 + . . scaffold546 GLEAN mRNA 542353 542491 0.372451 + . ID=CGI_10021008; scaffold546 TRF Tandem_Repeat 542353 542491 59 + . . scaffold546 GLEAN mRNA 542365 542479 0.372451 + . ID=CGI_10021008; scaffold546 TRF Tandem_Repeat 542365 542479 82 + . . scaffold546 GLEAN mRNA 542486 542648 0.372451 + . ID=CGI_10021008; scaffold546 TRF Tandem_Repeat 542486 542648 254 + . . scaffold546 GLEAN mRNA 579304 579379 0.999026 + . ID=CGI_10021013; scaffold546 TRF Tandem_Repeat 579304 579379 152 + . . scaffold546 GLEAN mRNA 586446 586503 0.999026 + . ID=CGI_10021013; scaffold546 TRF Tandem_Repeat 586446 586503 116 + . . scaffold546 GLEAN mRNA 579304 579379 0.831479 - . ID=CGI_10021014; scaffold546 TRF Tandem_Repeat 579304 579379 152 + . . scaffold546 GLEAN mRNA 594833 594858 0.990448 - . ID=CGI_10021015; scaffold546 TRF Tandem_Repeat 594833 594858 52 + . . scaffold546 GLEAN mRNA 608254 608297 0.990448 - . ID=CGI_10021015; scaffold546 TRF Tandem_Repeat 608254 608297 88 + . . scaffold546 GLEAN mRNA 613344 614027 0.990448 - . ID=CGI_10021015; scaffold546 TRF Tandem_Repeat 613344 614027 918 + . . scaffold546 GLEAN mRNA 641526 641587 0.56407 + . ID=CGI_10021018; scaffold546 TRF Tandem_Repeat 641526 641587 124 + . . scaffold546 GLEAN mRNA 647635 648216 1 + . ID=CGI_10021019; scaffold546 WUBlastX LINE_L1 647635 648216 25 + . . scaffold546 GLEAN mRNA 662918 662946 0.999395 - . ID=CGI_10021020; scaffold546 TRF Tandem_Repeat 662918 662946 58 + . . scaffold672 GLEAN mRNA 4840 4871 0.927273 - . ID=CGI_10021021; scaffold672 TRF Tandem_Repeat 4840 4871 64 + . . scaffold672 GLEAN mRNA 5936 6004 0.927273 - . ID=CGI_10021021; scaffold672 TRF Tandem_Repeat 5936 6004 138 + . . scaffold672 GLEAN mRNA 15243 15551 0.927273 - . ID=CGI_10021021; scaffold672 WUBlastX LINE_RTE-BovB 15243 15551 189 + . . scaffold672 GLEAN mRNA 15171 15458 0.927273 - . ID=CGI_10021021; scaffold672 WUBlastX LINE_RTE-BovB 15171 15458 88 + . . scaffold672 GLEAN mRNA 9257 9379 0.927273 - . ID=CGI_10021021; scaffold672 WUBlastX DNA_IS4EU 9257 9379 36 + . . scaffold672 GLEAN mRNA 10159 10386 0.927273 - . ID=CGI_10021021; scaffold672 WUBlastX DNA_IS4EU 10159 10386 106 + . . scaffold672 GLEAN mRNA 46309 46347 1 - . ID=CGI_10021022; scaffold672 TRF Tandem_Repeat 46309 46347 78 + . . scaffold672 GLEAN mRNA 129733 130164 0.990434 + . ID=CGI_10021024; scaffold672 WUBlastX LINE_RTE-BovB 129733 130164 48 + . . scaffold672 GLEAN mRNA 130455 132092 0.990434 + . ID=CGI_10021024; scaffold672 WUBlastX DNA_MuDR 130455 132092 665 + . . scaffold672 GLEAN mRNA 186283 186324 1 + . ID=CGI_10021027; scaffold672 TRF Tandem_Repeat 186283 186324 84 + . . scaffold672 GLEAN mRNA 186562 186619 1 + . ID=CGI_10021027; scaffold672 TRF Tandem_Repeat 186562 186619 100 + . . scaffold672 GLEAN mRNA 186882 186924 1 + . ID=CGI_10021027; scaffold672 TRF Tandem_Repeat 186882 186924 86 + . . scaffold672 GLEAN mRNA 192397 192687 1 + . ID=CGI_10021027; scaffold672 WUBlastX LINE_RTE-X 192397 192687 42 - . . scaffold672 GLEAN mRNA 191752 192597 1 + . ID=CGI_10021027; scaffold672 WUBlastX LINE_RTE-X 191752 192597 547 - . . scaffold672 GLEAN mRNA 191632 192630 1 + . ID=CGI_10021027; scaffold672 WUBlastX LINE_RTE-X 191632 192630 178 - . . scaffold672 GLEAN mRNA 231758 231820 0.999407 - . ID=CGI_10021030; scaffold672 TRF Tandem_Repeat 231758 231820 94 + . . scaffold672 GLEAN mRNA 286238 286328 0.887685 - . ID=CGI_10021033; scaffold672 TRF Tandem_Repeat 286238 286328 96 + . . scaffold672 GLEAN mRNA 290024 291416 0.887685 - . ID=CGI_10021033; scaffold672 TRF Tandem_Repeat 290024 291416 1555 + . . scaffold672 GLEAN mRNA 296168 296382 0.887685 - . ID=CGI_10021033; scaffold672 TRF Tandem_Repeat 296168 296382 292 + . . scaffold672 GLEAN mRNA 296168 297217 0.887685 - . ID=CGI_10021033; scaffold672 TRF Tandem_Repeat 296168 297217 840 + . . scaffold672 GLEAN mRNA 296168 297224 0.887685 - . ID=CGI_10021033; scaffold672 TRF Tandem_Repeat 296168 297224 872 + . . scaffold672 GLEAN mRNA 296377 296936 0.887685 - . ID=CGI_10021033; scaffold672 TRF Tandem_Repeat 296377 296936 652 + . . scaffold672 GLEAN mRNA 297078 297224 0.887685 - . ID=CGI_10021033; scaffold672 TRF Tandem_Repeat 297078 297224 213 + . . scaffold672 GLEAN mRNA 336328 336990 0.99935 + . ID=CGI_10021036; scaffold672 TRF Tandem_Repeat 336328 336990 1155 + . . scaffold672 GLEAN mRNA 345387 345432 0.374241 + . ID=CGI_10021037; scaffold672 TRF Tandem_Repeat 345387 345432 83 + . . scaffold672 GLEAN mRNA 345918 345954 0.374241 + . ID=CGI_10021037; scaffold672 TRF Tandem_Repeat 345918 345954 65 + . . scaffold672 GLEAN mRNA 429198 430364 0.999999 - . ID=CGI_10021041; scaffold672 WUBlastX LINE_L2 429198 431732 1382 - . . scaffold672 GLEAN mRNA 429552 430364 0.999999 - . ID=CGI_10021041; scaffold672 WUBlastX LINE_I 429552 432191 68 - . . scaffold672 GLEAN mRNA 451861 451899 0.997217 - . ID=CGI_10021044; scaffold672 TRF Tandem_Repeat 451861 451899 78 + . . scaffold672 GLEAN mRNA 478594 478662 0.94275 - . ID=CGI_10021046; scaffold672 TRF Tandem_Repeat 478594 478662 120 + . . scaffold672 GLEAN mRNA 537465 537499 0.948124 + . ID=CGI_10021050; scaffold672 TRF Tandem_Repeat 537465 537499 70 + . . scaffold672 GLEAN mRNA 575034 575137 0.661903 - . ID=CGI_10021053; scaffold672 TRF Tandem_Repeat 575034 575137 86 + . . scaffold672 GLEAN mRNA 587428 587473 0.661903 - . ID=CGI_10021053; scaffold672 TRF Tandem_Repeat 587428 587473 51 + . . scaffold672 GLEAN mRNA 641471 642130 0.629162 - . ID=CGI_10021055; scaffold672 WUBlastX LINE_RTE-X 641471 642130 29 - . . scaffold203 GLEAN mRNA 6170 6202 0.999998 + . ID=CGI_10021060; scaffold203 TRF Tandem_Repeat 6170 6202 57 + . . scaffold203 GLEAN mRNA 6360 6400 0.999998 + . ID=CGI_10021060; scaffold203 TRF Tandem_Repeat 6360 6400 50 + . . scaffold203 GLEAN mRNA 6398 6447 0.999998 + . ID=CGI_10021060; scaffold203 TRF Tandem_Repeat 6398 6447 100 + . . scaffold203 GLEAN mRNA 12023 12880 0.999039 - . ID=CGI_10021061; scaffold203 WUBlastX DNA_Sola 12023 12880 20 - . . scaffold203 GLEAN mRNA 11909 12502 0.999039 - . ID=CGI_10021061; scaffold203 WUBlastX DNA_Sola 11909 12502 57 - . . scaffold203 GLEAN mRNA 80167 80209 0.651071 + . ID=CGI_10021063; scaffold203 TRF Tandem_Repeat 80167 80209 52 + . . scaffold203 GLEAN mRNA 77203 77532 0.651071 + . ID=CGI_10021063; scaffold203 WUBlastX LINE_RTE-X 77203 77532 64 - . . scaffold203 GLEAN mRNA 86491 87122 0.258685 + . ID=CGI_10021064; scaffold203 TRF Tandem_Repeat 86491 87122 500 + . . scaffold203 GLEAN mRNA 86505 87125 0.258685 + . ID=CGI_10021064; scaffold203 TRF Tandem_Repeat 86505 87125 207 + . . scaffold203 GLEAN mRNA 86491 87122 0.258685 + . ID=CGI_10021064; scaffold203 TRF Tandem_Repeat 86491 87122 403 + . . scaffold203 GLEAN mRNA 86493 87125 0.258685 + . ID=CGI_10021064; scaffold203 TRF Tandem_Repeat 86493 87125 501 + . . scaffold203 GLEAN mRNA 87152 87703 0.258685 + . ID=CGI_10021064; scaffold203 TRF Tandem_Repeat 87152 87703 421 + . . scaffold203 GLEAN mRNA 87152 87672 0.258685 + . ID=CGI_10021064; scaffold203 TRF Tandem_Repeat 87152 87672 277 + . . scaffold203 GLEAN mRNA 92391 92445 0.258685 + . ID=CGI_10021064; scaffold203 TRF Tandem_Repeat 92391 92445 74 + . . scaffold203 GLEAN mRNA 92385 92445 0.258685 + . ID=CGI_10021064; scaffold203 TRF Tandem_Repeat 92385 92445 97 + . . scaffold203 GLEAN mRNA 92615 93976 0.258685 + . ID=CGI_10021064; scaffold203 TRF Tandem_Repeat 92615 93976 2123 + . . scaffold203 GLEAN mRNA 103595 103696 0.258685 + . ID=CGI_10021064; scaffold203 TRF Tandem_Repeat 103595 103696 62 + . . scaffold203 GLEAN mRNA 103595 103696 0.258685 + . ID=CGI_10021064; scaffold203 TRF Tandem_Repeat 103595 103696 114 + . . scaffold203 GLEAN mRNA 111559 111600 0.258685 + . ID=CGI_10021064; scaffold203 WUBlastX DNA_TcMar-Marin 111559 111600 25 - . . scaffold203 GLEAN mRNA 112302 112457 0.258685 + . ID=CGI_10021064; scaffold203 WUBlastX DNA_TcMar-Marin 112302 112457 92 - . . scaffold203 GLEAN mRNA 108682 109695 0.258685 + . ID=CGI_10021064; scaffold203 WUBlastX DNA_Crypton 108682 109695 609 - . . scaffold203 GLEAN mRNA 112486 112896 0.258685 + . ID=CGI_10021064; scaffold203 WUBlastX DNA_TcMar-Marin 112486 112896 68 - . . scaffold203 GLEAN mRNA 111409 111600 0.258685 + . ID=CGI_10021064; scaffold203 WUBlastX DNA_TcMar-Marin 111409 111600 23 - . . scaffold203 GLEAN mRNA 112242 112559 0.258685 + . ID=CGI_10021064; scaffold203 WUBlastX DNA_TcMar-Marin 112242 112559 22 - . . scaffold203 GLEAN mRNA 243467 244262 0.386443 + . ID=CGI_10021067; scaffold203 TRF Tandem_Repeat 243467 244262 1324 + . . scaffold203 GLEAN mRNA 244271 244330 0.386443 + . ID=CGI_10021067; scaffold203 TRF Tandem_Repeat 244271 244330 84 + . . scaffold203 GLEAN mRNA 252076 252105 0.386443 + . ID=CGI_10021067; scaffold203 TRF Tandem_Repeat 252076 252105 51 + . . scaffold203 GLEAN mRNA 256449 256950 0.386443 + . ID=CGI_10021067; scaffold203 TRF Tandem_Repeat 256449 256950 445 + . . scaffold203 GLEAN mRNA 257691 257735 0.386443 + . ID=CGI_10021067; scaffold203 TRF Tandem_Repeat 257691 257735 63 + . . scaffold203 GLEAN mRNA 381464 381490 0.482825 + . ID=CGI_10021070; scaffold203 TRF Tandem_Repeat 381464 381490 54 + . . scaffold203 GLEAN mRNA 396741 396765 0.482825 + . ID=CGI_10021070; scaffold203 TRF Tandem_Repeat 396741 396765 50 + . . scaffold203 GLEAN mRNA 397563 397976 0.482825 + . ID=CGI_10021070; scaffold203 WUBlastX DNA_Sola 397563 397976 92 + . . scaffold203 GLEAN mRNA 397949 398395 0.482825 + . ID=CGI_10021070; scaffold203 WUBlastX DNA_Sola 397949 398395 185 + . . scaffold203 GLEAN mRNA 413003 413030 0.482825 + . ID=CGI_10021070; scaffold203 TRF Tandem_Repeat 413003 413030 56 + . . scaffold203 GLEAN mRNA 381464 381490 0.995245 - . ID=CGI_10021071; scaffold203 TRF Tandem_Repeat 381464 381490 54 + . . scaffold203 GLEAN mRNA 396741 396765 0.995245 - . ID=CGI_10021071; scaffold203 TRF Tandem_Repeat 396741 396765 50 + . . scaffold203 GLEAN mRNA 397563 397976 0.995245 - . ID=CGI_10021071; scaffold203 WUBlastX DNA_Sola 397563 397976 92 + . . scaffold203 GLEAN mRNA 397949 398395 0.995245 - . ID=CGI_10021071; scaffold203 WUBlastX DNA_Sola 397949 398395 185 + . . scaffold203 GLEAN mRNA 425854 426126 0.3597 + . ID=CGI_10021072; scaffold203 WUBlastX LINE_RTE-X 425854 426126 61 - . . scaffold203 GLEAN mRNA 425695 426153 0.3597 + . ID=CGI_10021072; scaffold203 WUBlastX LINE_RTE-X 425695 426153 40 - . . scaffold203 GLEAN mRNA 437063 437257 0.461924 + . ID=CGI_10021073; scaffold203 TRF Tandem_Repeat 437063 437257 327 + . . scaffold203 GLEAN mRNA 446675 446736 0.461924 + . ID=CGI_10021073; scaffold203 TRF Tandem_Repeat 446675 446736 124 + . . scaffold203 GLEAN mRNA 446954 447002 0.461924 + . ID=CGI_10021073; scaffold203 TRF Tandem_Repeat 446954 447002 73 + . . scaffold203 GLEAN mRNA 457180 457788 0.461924 + . ID=CGI_10021073; scaffold203 TRF Tandem_Repeat 457180 457788 634 + . . scaffold203 GLEAN mRNA 457180 457785 0.461924 + . ID=CGI_10021073; scaffold203 TRF Tandem_Repeat 457180 457785 602 + . . scaffold203 GLEAN mRNA 453175 453552 0.461924 + . ID=CGI_10021073; scaffold203 WUBlastX LINE_RTE-X 453175 453552 23 - . . scaffold203 GLEAN mRNA 453340 453591 0.461924 + . ID=CGI_10021073; scaffold203 WUBlastX LINE_RTE-X 453340 453591 52 - . . scaffold203 GLEAN mRNA 534773 534805 0.999964 - . ID=CGI_10021077; scaffold203 TRF Tandem_Repeat 534773 534805 66 + . . scaffold203 GLEAN mRNA 567925 568019 0.999989 + . ID=CGI_10021079; scaffold203 TRF Tandem_Repeat 567925 568019 163 + . . scaffold203 GLEAN mRNA 569819 569894 0.999989 + . ID=CGI_10021079; scaffold203 TRF Tandem_Repeat 569819 569894 127 + . . scaffold203 GLEAN mRNA 573997 574039 0.999992 - . ID=CGI_10021080; scaffold203 TRF Tandem_Repeat 573997 574039 86 + . . scaffold203 GLEAN mRNA 600639 600691 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 600639 600691 106 + . . scaffold203 GLEAN mRNA 603663 603698 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 603663 603698 72 + . . scaffold203 GLEAN mRNA 610781 610955 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 610781 610955 145 + . . scaffold203 GLEAN mRNA 610775 610948 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 610775 610948 161 + . . scaffold203 GLEAN mRNA 615057 615286 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 615057 615286 239 + . . scaffold203 GLEAN mRNA 620192 620298 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 620192 620298 117 + . . scaffold203 GLEAN mRNA 621125 621172 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 621125 621172 87 + . . scaffold203 GLEAN mRNA 624126 624239 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 624126 624239 140 + . . scaffold203 GLEAN mRNA 632245 632333 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 632245 632333 142 + . . scaffold203 GLEAN mRNA 632878 633176 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 632878 633176 264 + . . scaffold203 GLEAN mRNA 635275 635309 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 635275 635309 70 + . . scaffold203 GLEAN mRNA 635672 636200 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 635672 636200 772 + . . scaffold203 GLEAN mRNA 628185 628388 0.810319 + . ID=CGI_10021081; scaffold203 WUBlastX LINE_RTE-X 628185 628388 89 - . . scaffold203 GLEAN mRNA 628610 629374 0.810319 + . ID=CGI_10021081; scaffold203 WUBlastX LINE_RTE-X 628610 629374 103 - . . scaffold203 GLEAN mRNA 628143 628385 0.810319 + . ID=CGI_10021081; scaffold203 WUBlastX LINE_RTE-X 628143 628385 75 - . . scaffold203 GLEAN mRNA 628107 628337 0.810319 + . ID=CGI_10021081; scaffold203 WUBlastX LINE_RTE-X 628107 628337 30 - . . scaffold203 GLEAN mRNA 629373 629537 0.810319 + . ID=CGI_10021081; scaffold203 WUBlastX LINE_RTE-X 629373 629537 71 - . . scaffold203 GLEAN mRNA 628979 629326 0.810319 + . ID=CGI_10021081; scaffold203 WUBlastX LINE_RTE-X 628979 629326 104 - . . scaffold203 GLEAN mRNA 639957 640193 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 639957 640193 134 + . . scaffold203 GLEAN mRNA 639981 640169 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 639981 640169 258 + . . scaffold203 GLEAN mRNA 639981 640880 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 639981 640880 556 + . . scaffold203 GLEAN mRNA 639999 640714 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 639999 640714 549 + . . scaffold203 GLEAN mRNA 640213 640321 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 640213 640321 103 + . . scaffold203 GLEAN mRNA 640366 640714 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 640366 640714 398 + . . scaffold203 GLEAN mRNA 640794 640904 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 640794 640904 120 + . . scaffold203 GLEAN mRNA 642441 642650 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 642441 642650 213 + . . scaffold203 GLEAN mRNA 642441 642649 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 642441 642649 241 + . . scaffold203 GLEAN mRNA 644892 645161 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 644892 645161 382 + . . scaffold203 GLEAN mRNA 645841 645884 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 645841 645884 70 + . . scaffold203 GLEAN mRNA 647702 647901 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 647702 647901 391 + . . scaffold203 GLEAN mRNA 647663 647901 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 647663 647901 327 + . . scaffold610 GLEAN mRNA 19453 19566 0.987056 + . ID=CGI_10021082; scaffold610 WUBlastX DNA_hAT-Ac 19453 19566 100 + . . scaffold610 GLEAN mRNA 103532 104194 0.827114 + . ID=CGI_10021088; scaffold610 TRF Tandem_Repeat 103532 104194 995 + . . scaffold610 GLEAN mRNA 105261 105521 0.827114 + . ID=CGI_10021088; scaffold610 WUBlastX DNA_Kolobok-IS4 105261 105521 56 - . . scaffold610 GLEAN mRNA 106122 106217 0.827114 + . ID=CGI_10021088; scaffold610 WUBlastX DNA_Kolobok-IS4 106122 106217 26 - . . scaffold610 GLEAN mRNA 105701 106018 0.827114 + . ID=CGI_10021088; scaffold610 WUBlastX DNA_IS4EU 105701 106018 94 - . . scaffold610 GLEAN mRNA 105605 105919 0.827114 + . ID=CGI_10021088; scaffold610 WUBlastX DNA_Kolobok-IS4 105605 105919 48 - . . scaffold610 GLEAN mRNA 104503 105033 0.827114 + . ID=CGI_10021088; scaffold610 WUBlastX DNA_IS4EU 104503 105033 310 + . . scaffold610 GLEAN mRNA 105345 105563 0.827114 + . ID=CGI_10021088; scaffold610 WUBlastX DNA_IS4EU 105345 105563 86 - . . scaffold610 GLEAN mRNA 105027 105155 0.827114 + . ID=CGI_10021088; scaffold610 WUBlastX DNA_IS4EU 105027 105155 51 + . . scaffold610 GLEAN mRNA 106610 106813 0.984177 - . ID=CGI_10021089; scaffold610 WUBlastX DNA_Kolobok-IS4 106610 106813 24 - . . scaffold610 GLEAN mRNA 129884 130237 0.728666 + . ID=CGI_10021092; scaffold610 WUBlastX LTR_Gypsy 129884 130237 135 - . . scaffold610 GLEAN mRNA 129884 130540 0.728666 + . ID=CGI_10021092; scaffold610 WUBlastX LTR_Gypsy 129884 130540 69 - . . scaffold610 GLEAN mRNA 129490 129825 0.728666 + . ID=CGI_10021092; scaffold610 WUBlastX LTR_Gypsy-Cigr 129490 129825 99 - . . scaffold610 GLEAN mRNA 129318 129509 0.728666 + . ID=CGI_10021092; scaffold610 WUBlastX LTR_Gypsy 129318 129509 116 - . . scaffold610 GLEAN mRNA 128880 129476 0.728666 + . ID=CGI_10021092; scaffold610 WUBlastX LTR_Gypsy 128880 129476 85 - . . scaffold610 GLEAN mRNA 128988 129476 0.728666 + . ID=CGI_10021092; scaffold610 WUBlastX LTR_Gypsy-Cigr 128988 129476 152 - . . scaffold610 GLEAN mRNA 129944 130372 0.728666 + . ID=CGI_10021092; scaffold610 WUBlastX LTR_Gypsy-Cigr 129944 130372 198 - . . scaffold610 GLEAN mRNA 141520 141552 0.728666 + . ID=CGI_10021092; scaffold610 TRF Tandem_Repeat 141520 141552 50 + . . scaffold610 GLEAN mRNA 200155 200182 1 - . ID=CGI_10021098; scaffold610 TRF Tandem_Repeat 200155 200182 56 + . . scaffold610 GLEAN mRNA 202136 202186 1 - . ID=CGI_10021098; scaffold610 TRF Tandem_Repeat 202136 202186 93 + . . scaffold610 GLEAN mRNA 210674 210723 0.722011 + . ID=CGI_10021099; scaffold610 TRF Tandem_Repeat 210674 210723 100 + . . scaffold610 GLEAN mRNA 239037 239354 1 + . ID=CGI_10021102; scaffold610 WUBlastX LINE_L2 239037 239354 79 - . . scaffold610 GLEAN mRNA 239091 239360 1 + . ID=CGI_10021102; scaffold610 WUBlastX LINE_L2 239091 239360 132 - . . scaffold610 GLEAN mRNA 280583 281212 0.9996 + . ID=CGI_10021107; scaffold610 WUBlastX LTR_Ngaro 280583 281212 73 - . . scaffold610 GLEAN mRNA 280742 281446 0.9996 + . ID=CGI_10021107; scaffold610 WUBlastX LTR_Ngaro 280742 281446 216 - . . scaffold610 GLEAN mRNA 279838 280491 0.9996 + . ID=CGI_10021107; scaffold610 WUBlastX LTR_Ngaro 279838 280491 474 - . . scaffold610 GLEAN mRNA 304483 304784 0.826763 - . ID=CGI_10021109; scaffold610 TRF Tandem_Repeat 304483 304784 363 + . . scaffold610 GLEAN mRNA 305333 305386 0.826763 - . ID=CGI_10021109; scaffold610 TRF Tandem_Repeat 305333 305386 108 + . . scaffold610 GLEAN mRNA 317128 317454 0.826763 - . ID=CGI_10021109; scaffold610 TRF Tandem_Repeat 317128 317454 288 + . . scaffold610 GLEAN mRNA 318364 318399 0.826763 - . ID=CGI_10021109; scaffold610 TRF Tandem_Repeat 318364 318399 63 + . . scaffold610 GLEAN mRNA 335614 335693 0.211385 + . ID=CGI_10021111; scaffold610 TRF Tandem_Repeat 335614 335693 144 + . . scaffold610 GLEAN mRNA 336359 336411 0.211385 + . ID=CGI_10021111; scaffold610 TRF Tandem_Repeat 336359 336411 106 + . . scaffold610 GLEAN mRNA 341935 342119 0.211385 + . ID=CGI_10021111; scaffold610 TRF Tandem_Repeat 341935 342119 129 + . . scaffold610 GLEAN mRNA 341958 342127 0.211385 + . ID=CGI_10021111; scaffold610 TRF Tandem_Repeat 341958 342127 139 + . . scaffold610 GLEAN mRNA 341957 342136 0.211385 + . ID=CGI_10021111; scaffold610 TRF Tandem_Repeat 341957 342136 168 + . . scaffold610 GLEAN mRNA 370137 370182 1 + . ID=CGI_10021116; scaffold610 TRF Tandem_Repeat 370137 370182 92 + . . scaffold610 GLEAN mRNA 483740 483768 1 - . ID=CGI_10021126; scaffold610 TRF Tandem_Repeat 483740 483768 58 + . . scaffold610 GLEAN mRNA 513311 513360 0.496714 + . ID=CGI_10021128; scaffold610 TRF Tandem_Repeat 513311 513360 52 + . . scaffold610 GLEAN mRNA 522208 522351 0.496714 + . ID=CGI_10021128; scaffold610 TRF Tandem_Repeat 522208 522351 83 + . . scaffold610 GLEAN mRNA 522217 522351 0.496714 + . ID=CGI_10021128; scaffold610 TRF Tandem_Repeat 522217 522351 144 + . . scaffold610 GLEAN mRNA 569223 569300 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy 569223 569300 43 + . . scaffold610 GLEAN mRNA 568220 568705 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy-Cigr 568220 568705 39 + . . scaffold610 GLEAN mRNA 568894 569202 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy-Cigr 568894 569202 183 + . . scaffold610 GLEAN mRNA 569350 569517 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy-Cigr 569350 569517 30 + . . scaffold610 GLEAN mRNA 569410 569544 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy 569410 569544 22 + . . scaffold610 GLEAN mRNA 567158 568204 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy-Cigr 567158 568204 570 + . . scaffold610 GLEAN mRNA 569223 569360 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy 569223 569360 40 + . . scaffold610 GLEAN mRNA 568756 569175 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy 568756 569175 125 + . . scaffold610 GLEAN mRNA 568603 569244 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy 568603 569244 105 + . . scaffold610 GLEAN mRNA 564051 564464 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy-Cigr 564051 564464 68 + . . scaffold610 GLEAN mRNA 567206 568390 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy 567206 568390 314 + . . scaffold610 GLEAN mRNA 566828 568198 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy 566828 568198 388 + . . scaffold610 GLEAN mRNA 570976 571021 0.974441 - . ID=CGI_10021131; scaffold610 TRF Tandem_Repeat 570976 571021 83 + . . scaffold610 GLEAN mRNA 572936 573037 0.974441 - . ID=CGI_10021131; scaffold610 TRF Tandem_Repeat 572936 573037 132 + . . scaffold610 GLEAN mRNA 572154 572672 0.974441 - . ID=CGI_10021131; scaffold610 WUBlastX DNA_Merlin 572154 572672 128 + . . scaffold610 GLEAN mRNA 571719 571913 0.974441 - . ID=CGI_10021131; scaffold610 WUBlastX DNA_Merlin 571719 571913 33 + . . scaffold610 GLEAN mRNA 571776 572000 0.974441 - . ID=CGI_10021131; scaffold610 WUBlastX DNA_Merlin 571776 572000 43 + . . scaffold610 GLEAN mRNA 572244 572684 0.974441 - . ID=CGI_10021131; scaffold610 WUBlastX DNA_Merlin 572244 572684 153 + . . scaffold610 GLEAN mRNA 584255 584650 0.974441 - . ID=CGI_10021131; scaffold610 WUBlastX LTR_Gypsy 584255 584650 187 - . . scaffold610 GLEAN mRNA 583437 583982 0.974441 - . ID=CGI_10021131; scaffold610 WUBlastX LTR_Gypsy 583437 583982 52 - . . scaffold610 GLEAN mRNA 583545 583982 0.974441 - . ID=CGI_10021131; scaffold610 WUBlastX LTR_Gypsy 583545 583982 118 - . . scaffold610 GLEAN mRNA 583945 584229 0.974441 - . ID=CGI_10021131; scaffold610 WUBlastX LTR_Gypsy 583945 584229 30 - . . scaffold610 GLEAN mRNA 584086 584319 0.974441 - . ID=CGI_10021131; scaffold610 WUBlastX LTR_Gypsy 584086 584319 49 - . . scaffold610 GLEAN mRNA 598022 598234 0.974441 - . ID=CGI_10021131; scaffold610 WUBlastX LINE_RTE-X 598022 598234 48 - . . scaffold610 GLEAN mRNA 599722 599736 0.974441 - . ID=CGI_10021131; scaffold610 WUBlastX LINE_L1 599722 599850 52 - . . scaffold829 GLEAN mRNA 50507 50651 0.481292 - . ID=CGI_10021136; scaffold829 TRF Tandem_Repeat 50507 50651 119 + . . scaffold829 GLEAN mRNA 50509 50652 0.481292 - . ID=CGI_10021136; scaffold829 TRF Tandem_Repeat 50509 50652 135 + . . scaffold829 GLEAN mRNA 82392 82748 0.9999 - . ID=CGI_10021139; scaffold829 WUBlastX LINE_L2 82392 82772 49 - . . scaffold829 GLEAN mRNA 82431 82748 0.9999 - . ID=CGI_10021139; scaffold829 WUBlastX LINE_L1 82431 82748 52 - . . scaffold829 GLEAN mRNA 99572 99745 0.932887 + . ID=CGI_10021140; scaffold829 WUBlastX DNA_hAT-Tip100 99572 99745 143 - . . scaffold829 GLEAN mRNA 99518 99745 0.932887 + . ID=CGI_10021140; scaffold829 WUBlastX DNA_hAT-Tip100 99518 99745 61 - . . scaffold829 GLEAN mRNA 270786 270826 0.986682 + . ID=CGI_10021143; scaffold829 TRF Tandem_Repeat 270786 270826 73 + . . scaffold829 GLEAN mRNA 301822 301879 0.986682 + . ID=CGI_10021143; scaffold829 TRF Tandem_Repeat 301822 301879 116 + . . scaffold829 GLEAN mRNA 304628 304707 0.986682 + . ID=CGI_10021143; scaffold829 TRF Tandem_Repeat 304628 304707 54 + . . scaffold829 GLEAN mRNA 278404 279325 0.986682 + . ID=CGI_10021143; scaffold829 TRF Tandem_Repeat 278404 279325 1237 + . . scaffold829 GLEAN mRNA 450037 450192 1 - . ID=CGI_10021146; scaffold829 TRF Tandem_Repeat 450037 450192 186 + . . scaffold829 GLEAN mRNA 450080 450394 1 - . ID=CGI_10021146; scaffold829 TRF Tandem_Repeat 450080 450394 364 + . . scaffold829 GLEAN mRNA 450190 450330 1 - . ID=CGI_10021146; scaffold829 TRF Tandem_Repeat 450190 450330 255 + . . scaffold829 GLEAN mRNA 450203 450373 1 - . ID=CGI_10021146; scaffold829 TRF Tandem_Repeat 450203 450373 101 + . . scaffold829 GLEAN mRNA 464786 464846 0.291672 + . ID=CGI_10021147; scaffold829 TRF Tandem_Repeat 464786 464846 122 + . . scaffold829 GLEAN mRNA 468727 468793 0.291672 + . ID=CGI_10021147; scaffold829 TRF Tandem_Repeat 468727 468793 71 + . . scaffold829 GLEAN mRNA 468718 468793 0.291672 + . ID=CGI_10021147; scaffold829 TRF Tandem_Repeat 468718 468793 89 + . . scaffold829 GLEAN mRNA 471024 471057 0.291672 + . ID=CGI_10021147; scaffold829 TRF Tandem_Repeat 471024 471057 59 + . . scaffold829 GLEAN mRNA 471625 471684 0.291672 + . ID=CGI_10021147; scaffold829 TRF Tandem_Repeat 471625 471684 75 + . . scaffold829 GLEAN mRNA 476630 476655 0.291672 + . ID=CGI_10021147; scaffold829 TRF Tandem_Repeat 476630 476655 52 + . . scaffold829 GLEAN mRNA 527337 527392 0.999107 - . ID=CGI_10021149; scaffold829 TRF Tandem_Repeat 527337 527392 103 + . . scaffold829 GLEAN mRNA 527884 528826 0.999107 - . ID=CGI_10021149; scaffold829 TRF Tandem_Repeat 527884 528826 1041 + . . scaffold829 GLEAN mRNA 527898 528929 0.999107 - . ID=CGI_10021149; scaffold829 TRF Tandem_Repeat 527898 528929 917 + . . scaffold829 GLEAN mRNA 527884 528957 0.999107 - . ID=CGI_10021149; scaffold829 TRF Tandem_Repeat 527884 528957 1237 + . . scaffold829 GLEAN mRNA 527907 529007 0.999107 - . ID=CGI_10021149; scaffold829 TRF Tandem_Repeat 527907 529007 813 + . . scaffold829 GLEAN mRNA 530471 530668 0.999107 - . ID=CGI_10021149; scaffold829 WUBlastX LINE_Jockey 530471 530668 25 - . . scaffold829 GLEAN mRNA 555212 555250 0.526421 + . ID=CGI_10021150; scaffold829 TRF Tandem_Repeat 555212 555250 60 + . . scaffold829 GLEAN mRNA 568564 569403 0.817109 + . ID=CGI_10021151; scaffold829 TRF Tandem_Repeat 568564 569403 1290 + . . scaffold829 GLEAN mRNA 579376 579410 0.812815 + . ID=CGI_10021152; scaffold829 TRF Tandem_Repeat 579376 579410 70 + . . scaffold829 GLEAN mRNA 581747 581779 0.812815 + . ID=CGI_10021152; scaffold829 TRF Tandem_Repeat 581747 581779 66 + . . scaffold829 GLEAN mRNA 594573 594602 0.812815 + . ID=CGI_10021152; scaffold829 TRF Tandem_Repeat 594573 594602 60 + . . scaffold829 GLEAN mRNA 592586 592807 0.812815 + . ID=CGI_10021152; scaffold829 WUBlastX DNA_TcMar-Pogo 592586 592807 118 - . . scaffold829 GLEAN mRNA 592873 593073 0.812815 + . ID=CGI_10021152; scaffold829 WUBlastX DNA_TcMar-Pogo 592873 593073 73 - . . scaffold829 GLEAN mRNA 592274 592804 0.812815 + . ID=CGI_10021152; scaffold829 WUBlastX DNA_TcMar-Pogo 592274 592804 112 - . . scaffold829 GLEAN mRNA 592864 593028 0.812815 + . ID=CGI_10021152; scaffold829 WUBlastX DNA_TcMar-Pogo 592864 593028 101 - . . scaffold829 GLEAN mRNA 592598 592846 0.812815 + . ID=CGI_10021152; scaffold829 WUBlastX DNA_TcMar-Pogo 592598 592846 113 - . . scaffold829 GLEAN mRNA 592809 592871 0.812815 + . ID=CGI_10021152; scaffold829 WUBlastX DNA_TcMar-Tigge 592809 592871 35 - . . scaffold829 GLEAN mRNA 605741 605775 0.900297 + . ID=CGI_10021153; scaffold829 TRF Tandem_Repeat 605741 605775 61 + . . scaffold4 GLEAN mRNA 48228 48368 0.999937 + . ID=CGI_10021161; scaffold4 WUBlastX LINE_RTE-X 48228 48368 67 + . . scaffold4 GLEAN mRNA 50383 50425 0.999937 + . ID=CGI_10021161; scaffold4 TRF Tandem_Repeat 50383 50425 86 + . . scaffold4 GLEAN mRNA 53470 53664 0.999937 + . ID=CGI_10021161; scaffold4 WUBlastX LINE_RTE-X 53470 53664 37 - . . scaffold4 GLEAN mRNA 48998 49158 0.999937 + . ID=CGI_10021161; scaffold4 TRF Tandem_Repeat 48998 49158 126 + . . scaffold4 GLEAN mRNA 68360 68503 0.813891 + . ID=CGI_10021163; scaffold4 TRF Tandem_Repeat 68360 68503 130 + . . scaffold4 GLEAN mRNA 68379 68521 0.813891 + . ID=CGI_10021163; scaffold4 TRF Tandem_Repeat 68379 68521 105 + . . scaffold4 GLEAN mRNA 75691 76400 0.813891 + . ID=CGI_10021163; scaffold4 TRF Tandem_Repeat 75691 76400 1197 + . . scaffold4 GLEAN mRNA 76734 76825 0.813891 + . ID=CGI_10021163; scaffold4 TRF Tandem_Repeat 76734 76825 96 + . . scaffold4 GLEAN mRNA 76847 77012 0.813891 + . ID=CGI_10021163; scaffold4 TRF Tandem_Repeat 76847 77012 168 + . . scaffold4 GLEAN mRNA 88167 88218 0.999414 - . ID=CGI_10021164; scaffold4 TRF Tandem_Repeat 88167 88218 104 + . . scaffold4 GLEAN mRNA 138204 138238 0.999296 + . ID=CGI_10021169; scaffold4 TRF Tandem_Repeat 138204 138238 70 + . . scaffold4 GLEAN mRNA 168842 168952 0.836238 - . ID=CGI_10021171; scaffold4 TRF Tandem_Repeat 168842 168952 222 + . . scaffold4 GLEAN mRNA 345488 345531 0.759631 + . ID=CGI_10021174; scaffold4 TRF Tandem_Repeat 345488 345531 56 + . . scaffold4 GLEAN mRNA 346835 347248 0.759631 + . ID=CGI_10021174; scaffold4 WUBlastX LINE_L1-Tx1 346835 347248 24 - . . scaffold4 GLEAN mRNA 347009 347620 0.759631 + . ID=CGI_10021174; scaffold4 WUBlastX LINE_L1-Tx1 347009 347620 68 - . . scaffold4 GLEAN mRNA 347692 349815 0.759631 + . ID=CGI_10021174; scaffold4 WUBlastX LINE_L1-Tx1 347692 349815 809 - . . scaffold4 GLEAN mRNA 378935 379073 1 + . ID=CGI_10021175; scaffold4 TRF Tandem_Repeat 378935 379073 251 + . . scaffold4 GLEAN mRNA 382376 382446 1 + . ID=CGI_10021175; scaffold4 TRF Tandem_Repeat 382376 382446 126 + . . scaffold4 GLEAN mRNA 382376 382446 0.737572 - . ID=CGI_10021176; scaffold4 TRF Tandem_Repeat 382376 382446 126 + . . scaffold4 GLEAN mRNA 386923 386989 0.737572 - . ID=CGI_10021176; scaffold4 TRF Tandem_Repeat 386923 386989 134 + . . scaffold4 GLEAN mRNA 388334 388391 0.737572 - . ID=CGI_10021176; scaffold4 TRF Tandem_Repeat 388334 388391 107 + . . scaffold4 GLEAN mRNA 389119 389200 0.737572 - . ID=CGI_10021176; scaffold4 TRF Tandem_Repeat 389119 389200 164 + . . scaffold4 GLEAN mRNA 400298 400604 0.934022 - . ID=CGI_10021178; scaffold4 TRF Tandem_Repeat 400298 400604 488 + . . scaffold4 GLEAN mRNA 410777 411342 0.934022 - . ID=CGI_10021178; scaffold4 TRF Tandem_Repeat 410777 411342 848 + . . scaffold4 GLEAN mRNA 411848 412130 0.934022 - . ID=CGI_10021178; scaffold4 TRF Tandem_Repeat 411848 412130 487 + . . scaffold4 GLEAN mRNA 412574 412605 0.934022 - . ID=CGI_10021178; scaffold4 TRF Tandem_Repeat 412574 412605 64 + . . scaffold4 GLEAN mRNA 412603 412653 0.934022 - . ID=CGI_10021178; scaffold4 TRF Tandem_Repeat 412603 412653 93 + . . scaffold4 GLEAN mRNA 425754 425787 0.960328 - . ID=CGI_10021179; scaffold4 TRF Tandem_Repeat 425754 425787 59 + . . scaffold4 GLEAN mRNA 435618 435818 0.960328 - . ID=CGI_10021179; scaffold4 WUBlastX LINE_L1-Tx1 435618 435818 52 + . . scaffold4 GLEAN mRNA 435636 435977 0.960328 - . ID=CGI_10021179; scaffold4 WUBlastX LINE_L1 435636 435977 36 + . . scaffold4 GLEAN mRNA 435651 435863 0.960328 - . ID=CGI_10021179; scaffold4 WUBlastX LINE_L1-Tx1 435651 435863 36 + . . scaffold4 GLEAN mRNA 457257 457320 0.960328 - . ID=CGI_10021179; scaffold4 TRF Tandem_Repeat 457257 457320 128 + . . scaffold4 GLEAN mRNA 458306 458347 0.960328 - . ID=CGI_10021179; scaffold4 TRF Tandem_Repeat 458306 458347 84 + . . scaffold4 GLEAN mRNA 459300 459590 0.960328 - . ID=CGI_10021179; scaffold4 WUBlastX LINE_RTE-X 459300 459590 41 + . . scaffold4 GLEAN mRNA 459288 459482 0.960328 - . ID=CGI_10021179; scaffold4 WUBlastX LINE_RTE-X 459288 459482 67 + . . scaffold4 GLEAN mRNA 459234 459476 0.960328 - . ID=CGI_10021179; scaffold4 WUBlastX LINE_RTE-X 459234 459476 25 + . . scaffold4 GLEAN mRNA 464006 464087 0.998731 + . ID=CGI_10021180; scaffold4 TRF Tandem_Repeat 464006 464087 71 + . . scaffold4 GLEAN mRNA 473267 473779 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1-Tx1 473267 473779 111 - . . scaffold4 GLEAN mRNA 474860 475048 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1 474860 475048 40 - . . scaffold4 GLEAN mRNA 474746 475111 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1-Tx1 474746 475111 25 - . . scaffold4 GLEAN mRNA 474620 474676 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1 474620 474676 20 - . . scaffold4 GLEAN mRNA 474827 475012 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1 474827 475012 42 - . . scaffold4 GLEAN mRNA 473498 473944 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_Dong-R4 473498 473944 22 - . . scaffold4 GLEAN mRNA 474878 475099 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1 474878 475099 35 - . . scaffold4 GLEAN mRNA 475206 476429 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1-Tx1 475206 476429 612 - . . scaffold4 GLEAN mRNA 476772 477089 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1-Tx1 476772 477089 147 - . . scaffold4 GLEAN mRNA 476461 476544 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1 476461 476544 42 - . . scaffold4 GLEAN mRNA 476520 477029 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1-Tx1 476520 477029 162 - . . scaffold4 GLEAN mRNA 476431 476541 0.998731 + . ID=CGI_10021180; scaffold4 WUBlastX LINE_L1 476431 476541 29 - . . scaffold4 GLEAN mRNA 536172 536219 1 + . ID=CGI_10021182; scaffold4 WUBlastX LINE_Jockey 535710 536219 21 + . . scaffold4 GLEAN mRNA 597341 598312 0.999949 + . ID=CGI_10021188; scaffold4 TRF Tandem_Repeat 597341 598312 1332 + . . scaffold4 GLEAN mRNA 597341 598315 0.999949 + . ID=CGI_10021188; scaffold4 TRF Tandem_Repeat 597341 598315 1410 + . . scaffold4 GLEAN mRNA 597341 598312 0.999949 + . ID=CGI_10021188; scaffold4 TRF Tandem_Repeat 597341 598312 1314 + . . scaffold4 GLEAN mRNA 600737 601034 0.999949 + . ID=CGI_10021188; scaffold4 TRF Tandem_Repeat 600737 601034 479 + . . scaffold4 GLEAN mRNA 606354 606409 0.999949 + . ID=CGI_10021188; scaffold4 TRF Tandem_Repeat 606354 606409 112 + . . scaffold99 GLEAN mRNA 29750 29797 0.404855 + . ID=CGI_10021189; scaffold99 TRF Tandem_Repeat 29750 29797 96 + . . scaffold99 GLEAN mRNA 31585 32076 0.404855 + . ID=CGI_10021189; scaffold99 WUBlastX LINE_CR1-L2 31585 32076 129 - . . scaffold99 GLEAN mRNA 31558 31722 0.404855 + . ID=CGI_10021189; scaffold99 WUBlastX LINE_R1 31558 31722 27 - . . scaffold99 GLEAN mRNA 32079 32372 0.404855 + . ID=CGI_10021189; scaffold99 WUBlastX LINE_L2 32079 32372 175 - . . scaffold99 GLEAN mRNA 31401 31517 0.404855 + . ID=CGI_10021189; scaffold99 WUBlastX LINE_RTE-X 31401 31517 52 - . . scaffold99 GLEAN mRNA 34990 35155 0.404855 + . ID=CGI_10021189; scaffold99 TRF Tandem_Repeat 34990 35155 185 + . . scaffold99 GLEAN mRNA 35001 35241 0.404855 + . ID=CGI_10021189; scaffold99 TRF Tandem_Repeat 35001 35241 215 + . . scaffold99 GLEAN mRNA 36758 36980 0.404855 + . ID=CGI_10021189; scaffold99 TRF Tandem_Repeat 36758 36980 215 + . . scaffold99 GLEAN mRNA 36758 36980 0.404855 + . ID=CGI_10021189; scaffold99 TRF Tandem_Repeat 36758 36980 161 + . . scaffold99 GLEAN mRNA 37333 37425 0.404855 + . ID=CGI_10021189; scaffold99 TRF Tandem_Repeat 37333 37425 177 + . . scaffold99 GLEAN mRNA 32382 33008 0.404855 + . ID=CGI_10021189; scaffold99 WUBlastX LINE_CR1-L2 32382 33008 233 - . . scaffold99 GLEAN mRNA 32487 33242 0.404855 + . ID=CGI_10021189; scaffold99 WUBlastX LINE_L2 32487 33242 141 - . . scaffold99 GLEAN mRNA 32487 33020 0.404855 + . ID=CGI_10021189; scaffold99 WUBlastX LINE_L2 32487 33020 359 - . . scaffold99 GLEAN mRNA 103778 103933 0.99998 - . ID=CGI_10021190; scaffold99 TRF Tandem_Repeat 103778 103933 109 + . . scaffold99 GLEAN mRNA 103776 104176 0.99998 - . ID=CGI_10021190; scaffold99 TRF Tandem_Repeat 103776 104176 173 + . . scaffold99 GLEAN mRNA 103939 104176 0.99998 - . ID=CGI_10021190; scaffold99 TRF Tandem_Repeat 103939 104176 163 + . . scaffold99 GLEAN mRNA 104398 104574 0.99998 - . ID=CGI_10021190; scaffold99 TRF Tandem_Repeat 104398 104574 124 + . . scaffold99 GLEAN mRNA 108050 108427 0.544851 - . ID=CGI_10021191; scaffold99 WUBlastX DNA_IS4EU 108050 108427 70 + . . scaffold99 GLEAN mRNA 107906 108352 0.544851 - . ID=CGI_10021191; scaffold99 WUBlastX DNA_Kolobok-IS4 107906 108352 83 + . . scaffold99 GLEAN mRNA 107897 108253 0.544851 - . ID=CGI_10021191; scaffold99 WUBlastX DNA_IS4EU 107897 108253 100 + . . scaffold99 GLEAN mRNA 203484 203494 0.578574 - . ID=CGI_10021192; scaffold99 TRF Tandem_Repeat 203073 203494 452 + . . scaffold99 GLEAN mRNA 203484 203494 0.578574 - . ID=CGI_10021192; scaffold99 TRF Tandem_Repeat 203092 203494 430 + . . scaffold99 GLEAN mRNA 232469 232509 0.997456 - . ID=CGI_10021194; scaffold99 TRF Tandem_Repeat 232469 232509 82 + . . scaffold99 GLEAN mRNA 235700 235850 0.649382 + . ID=CGI_10021195; scaffold99 TRF Tandem_Repeat 235700 235850 196 + . . scaffold99 GLEAN mRNA 237245 237301 0.649382 + . ID=CGI_10021195; scaffold99 TRF Tandem_Repeat 237245 237301 114 + . . scaffold99 GLEAN mRNA 240685 240960 0.649382 + . ID=CGI_10021195; scaffold99 WUBlastX DNA_MuDR 240685 240960 26 + . . scaffold99 GLEAN mRNA 241548 241625 0.649382 + . ID=CGI_10021195; scaffold99 WUBlastX DNA_MuDR 241548 241661 34 + . . scaffold99 GLEAN mRNA 240673 240756 0.649382 + . ID=CGI_10021195; scaffold99 WUBlastX DNA_MuDR 240673 240756 31 + . . scaffold99 GLEAN mRNA 241083 241424 0.649382 + . ID=CGI_10021195; scaffold99 WUBlastX DNA_MuDR 241083 241424 75 + . . scaffold99 GLEAN mRNA 241023 241421 0.649382 + . ID=CGI_10021195; scaffold99 WUBlastX DNA_MuDR 241023 241421 62 + . . scaffold99 GLEAN mRNA 243401 243447 1 - . ID=CGI_10021196; scaffold99 TRF Tandem_Repeat 243401 243447 85 + . . scaffold99 GLEAN mRNA 271257 271295 0.990329 - . ID=CGI_10021197; scaffold99 TRF Tandem_Repeat 271257 271295 78 + . . scaffold99 GLEAN mRNA 271768 271830 0.990329 - . ID=CGI_10021197; scaffold99 TRF Tandem_Repeat 271768 271830 117 + . . scaffold99 GLEAN mRNA 272199 272255 0.990329 - . ID=CGI_10021197; scaffold99 TRF Tandem_Repeat 272199 272255 105 + . . scaffold99 GLEAN mRNA 355319 355379 0.999992 + . ID=CGI_10021201; scaffold99 TRF Tandem_Repeat 355319 355379 122 + . . scaffold99 GLEAN mRNA 357388 357966 0.999992 + . ID=CGI_10021201; scaffold99 WUBlastX LINE_CR1 357388 357966 167 + . . scaffold99 GLEAN mRNA 357583 358281 0.999992 + . ID=CGI_10021201; scaffold99 WUBlastX LINE_I 357583 358281 35 + . . scaffold99 GLEAN mRNA 358665 359084 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_L1-Tx1 358665 359084 177 + . . scaffold99 GLEAN mRNA 359682 360329 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_L1-Tx1 359682 360329 314 + . . scaffold99 GLEAN mRNA 358707 360314 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_L1-Tx1 358707 360314 163 + . . scaffold99 GLEAN mRNA 361947 362120 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_L1-Tx1 361947 362120 30 + . . scaffold99 GLEAN mRNA 361959 362267 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_L1-Tx1 361959 362267 28 + . . scaffold99 GLEAN mRNA 360328 361275 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_L1-Tx1 360328 361275 338 + . . scaffold99 GLEAN mRNA 360328 361449 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_L1-Tx1 360328 361449 246 + . . scaffold99 GLEAN mRNA 406444 406521 0.942648 - . ID=CGI_10021206; scaffold99 TRF Tandem_Repeat 406444 406521 138 + . . scaffold99 GLEAN mRNA 420141 420188 0.942648 - . ID=CGI_10021206; scaffold99 TRF Tandem_Repeat 420141 420188 71 + . . scaffold99 GLEAN mRNA 463126 463719 0.928915 - . ID=CGI_10021208; scaffold99 WUBlastX DNA_Kolobok-IS4 463126 463719 90 - . . scaffold99 GLEAN mRNA 463138 463443 0.928915 - . ID=CGI_10021208; scaffold99 WUBlastX DNA_IS4EU 463138 463443 117 - . . scaffold99 GLEAN mRNA 524280 524489 0.618241 + . ID=CGI_10021210; scaffold99 WUBlastX DNA_Harbinger 524274 524489 57 + . . scaffold99 GLEAN mRNA 534847 535816 0.999026 + . ID=CGI_10021211; scaffold99 TRF Tandem_Repeat 534847 535816 1730 + . . scaffold99 GLEAN mRNA 544370 544399 0.999026 + . ID=CGI_10021211; scaffold99 TRF Tandem_Repeat 544370 544399 51 + . . scaffold99 GLEAN mRNA 544569 545383 0.999026 + . ID=CGI_10021211; scaffold99 TRF Tandem_Repeat 544569 545383 1258 + . . scaffold99 GLEAN mRNA 545560 546558 0.999026 + . ID=CGI_10021211; scaffold99 TRF Tandem_Repeat 545560 546558 1414 + . . scaffold99 GLEAN mRNA 603547 604840 0.948988 + . ID=CGI_10021214; scaffold99 TRF Tandem_Repeat 603547 604840 1879 + . . scaffold99 GLEAN mRNA 605415 605510 0.948988 + . ID=CGI_10021214; scaffold99 TRF Tandem_Repeat 605415 605510 176 + . . scaffold99 GLEAN mRNA 609725 609754 0.948988 + . ID=CGI_10021214; scaffold99 TRF Tandem_Repeat 609725 609754 51 + . . scaffold99 GLEAN mRNA 610600 610878 0.948988 + . ID=CGI_10021214; scaffold99 WUBlastX LINE_L2 610600 610878 49 - . . scaffold99 GLEAN mRNA 603547 604840 1 - . ID=CGI_10021215; scaffold99 TRF Tandem_Repeat 603547 604840 1879 + . . scaffold99 GLEAN mRNA 605415 605510 1 - . ID=CGI_10021215; scaffold99 TRF Tandem_Repeat 605415 605510 176 + . . scaffold99 GLEAN mRNA 609725 609754 1 - . ID=CGI_10021215; scaffold99 TRF Tandem_Repeat 609725 609754 51 + . . scaffold99 GLEAN mRNA 610600 610878 1 - . ID=CGI_10021215; scaffold99 WUBlastX LINE_L2 610600 610878 49 - . . scaffold99 GLEAN mRNA 628407 628471 0.999675 + . ID=CGI_10021217; scaffold99 TRF Tandem_Repeat 628407 628471 51 + . . scaffold157 GLEAN mRNA 53983 54808 0.695106 - . ID=CGI_10021223; scaffold157 TRF Tandem_Repeat 53983 54808 857 + . . scaffold157 GLEAN mRNA 76283 76319 0.999938 - . ID=CGI_10021225; scaffold157 TRF Tandem_Repeat 76283 76319 74 + . . scaffold157 GLEAN mRNA 78085 78135 0.999938 - . ID=CGI_10021225; scaffold157 TRF Tandem_Repeat 78085 78135 102 + . . scaffold157 GLEAN mRNA 79456 79489 0.999938 - . ID=CGI_10021225; scaffold157 TRF Tandem_Repeat 79456 79489 68 + . . scaffold157 GLEAN mRNA 76283 76319 1 + . ID=CGI_10021226; scaffold157 TRF Tandem_Repeat 76283 76319 74 + . . scaffold157 GLEAN mRNA 79456 79489 1 + . ID=CGI_10021227; scaffold157 TRF Tandem_Repeat 79456 79489 68 + . . scaffold157 GLEAN mRNA 106344 106536 0.794457 - . ID=CGI_10021230; scaffold157 TRF Tandem_Repeat 106344 106536 242 + . . scaffold157 GLEAN mRNA 120783 120809 0.904988 + . ID=CGI_10021231; scaffold157 TRF Tandem_Repeat 120783 120809 54 + . . scaffold157 GLEAN mRNA 158088 158119 0.584787 + . ID=CGI_10021233; scaffold157 TRF Tandem_Repeat 158088 158119 64 + . . scaffold157 GLEAN mRNA 170735 171530 0.584787 + . ID=CGI_10021233; scaffold157 TRF Tandem_Repeat 170735 171530 1234 + . . scaffold157 GLEAN mRNA 198743 199071 0.584787 + . ID=CGI_10021233; scaffold157 TRF Tandem_Repeat 198743 199071 371 + . . scaffold157 GLEAN mRNA 223235 223273 0.998184 - . ID=CGI_10021235; scaffold157 TRF Tandem_Repeat 223235 223273 51 + . . scaffold157 GLEAN mRNA 233477 233520 0.639751 + . ID=CGI_10021237; scaffold157 TRF Tandem_Repeat 233477 233520 88 + . . scaffold157 GLEAN mRNA 243745 243881 0.999881 - . ID=CGI_10021238; scaffold157 TRF Tandem_Repeat 243745 243881 220 + . . scaffold157 GLEAN mRNA 247337 247505 0.799049 + . ID=CGI_10021239; scaffold157 TRF Tandem_Repeat 247337 247505 293 + . . scaffold157 GLEAN mRNA 248531 248572 0.799049 + . ID=CGI_10021239; scaffold157 TRF Tandem_Repeat 248531 248572 84 + . . scaffold157 GLEAN mRNA 273082 273119 0.999986 + . ID=CGI_10021241; scaffold157 TRF Tandem_Repeat 273082 273119 76 + . . scaffold157 GLEAN mRNA 377617 377876 0.999999 + . ID=CGI_10021249; scaffold157 TRF Tandem_Repeat 377617 377876 259 + . . scaffold157 GLEAN mRNA 377669 377878 0.999999 + . ID=CGI_10021249; scaffold157 TRF Tandem_Repeat 377669 377878 226 + . . scaffold157 GLEAN mRNA 381623 381756 0.999999 + . ID=CGI_10021249; scaffold157 TRF Tandem_Repeat 381623 381756 74 + . . scaffold157 GLEAN mRNA 381837 381941 0.999999 + . ID=CGI_10021249; scaffold157 TRF Tandem_Repeat 381837 381941 70 + . . scaffold157 GLEAN mRNA 392657 392710 0.999926 + . ID=CGI_10021252; scaffold157 TRF Tandem_Repeat 392657 392710 108 + . . scaffold157 GLEAN mRNA 405004 405061 0.999676 - . ID=CGI_10021254; scaffold157 TRF Tandem_Repeat 405004 405061 57 + . . scaffold157 GLEAN mRNA 405004 405061 0.999676 - . ID=CGI_10021254; scaffold157 TRF Tandem_Repeat 405004 405061 66 + . . scaffold157 GLEAN mRNA 420524 420587 0.987713 - . ID=CGI_10021256; scaffold157 TRF Tandem_Repeat 420524 420587 128 + . . scaffold157 GLEAN mRNA 439644 439792 0.974046 - . ID=CGI_10021257; scaffold157 TRF Tandem_Repeat 439644 439792 178 + . . scaffold157 GLEAN mRNA 531390 532946 1 + . ID=CGI_10021265; scaffold157 TRF Tandem_Repeat 531390 532946 2247 + . . scaffold157 GLEAN mRNA 534372 534402 1 + . ID=CGI_10021265; scaffold157 TRF Tandem_Repeat 534372 534402 62 + . . scaffold157 GLEAN mRNA 553447 553747 0.777767 + . ID=CGI_10021268; scaffold157 TRF Tandem_Repeat 553447 553747 503 + . . scaffold157 GLEAN mRNA 583486 583543 0.99996 + . ID=CGI_10021271; scaffold157 TRF Tandem_Repeat 583486 583543 50 + . . scaffold157 GLEAN mRNA 598408 598460 0.999675 + . ID=CGI_10021273; scaffold157 TRF Tandem_Repeat 598408 598460 106 + . . scaffold157 GLEAN mRNA 599003 599043 0.999675 + . ID=CGI_10021273; scaffold157 TRF Tandem_Repeat 599003 599043 55 + . . scaffold157 GLEAN mRNA 614163 614519 1 - . ID=CGI_10021275; scaffold157 TRF Tandem_Repeat 614163 614519 259 + . . scaffold157 GLEAN mRNA 623439 623514 0.728523 + . ID=CGI_10021276; scaffold157 TRF Tandem_Repeat 623439 623514 152 + . . scaffold113 GLEAN mRNA 52825 52863 0.991235 + . ID=CGI_10021282; scaffold113 WUBlastX LINE_RTE-X 52732 52863 22 + . . scaffold113 GLEAN mRNA 54251 54302 0.859957 + . ID=CGI_10021283; scaffold113 TRF Tandem_Repeat 54251 54302 56 + . . scaffold113 GLEAN mRNA 54355 54564 0.859957 + . ID=CGI_10021283; scaffold113 WUBlastX LINE_RTE-X 54355 54564 50 + . . scaffold113 GLEAN mRNA 54343 54660 0.859957 + . ID=CGI_10021283; scaffold113 WUBlastX LINE_RTE-X 54343 54660 41 + . . scaffold113 GLEAN mRNA 54358 54531 0.859957 + . ID=CGI_10021283; scaffold113 WUBlastX LINE_RTE-X 54358 54531 68 + . . scaffold113 GLEAN mRNA 54662 54838 0.859957 + . ID=CGI_10021283; scaffold113 WUBlastX LINE_RTE-X 54662 54838 82 + . . scaffold113 GLEAN mRNA 115214 115672 0.458528 + . ID=CGI_10021286; scaffold113 WUBlastX LINE_RTE-X 115214 115672 66 + . . scaffold113 GLEAN mRNA 117945 117970 0.458528 + . ID=CGI_10021286; scaffold113 WUBlastX LTR_Ngaro 117945 119357 710 + . . scaffold113 GLEAN mRNA 117182 117922 0.458528 + . ID=CGI_10021286; scaffold113 WUBlastX LTR_Ngaro 117182 117922 59 + . . scaffold113 GLEAN mRNA 116906 117685 0.458528 + . ID=CGI_10021286; scaffold113 WUBlastX LTR_Ngaro 116906 117685 20 + . . scaffold113 GLEAN mRNA 117302 117922 0.458528 + . ID=CGI_10021286; scaffold113 WUBlastX LTR_Ngaro 117302 117922 73 + . . scaffold113 GLEAN mRNA 174459 174616 0.777732 + . ID=CGI_10021288; scaffold113 TRF Tandem_Repeat 174459 174616 183 + . . scaffold113 GLEAN mRNA 174459 174616 0.777732 + . ID=CGI_10021288; scaffold113 TRF Tandem_Repeat 174459 174616 171 + . . scaffold113 GLEAN mRNA 172993 173358 0.777732 + . ID=CGI_10021288; scaffold113 WUBlastX LINE_RTE-X 172993 173358 35 - . . scaffold113 GLEAN mRNA 173083 173190 0.777732 + . ID=CGI_10021288; scaffold113 WUBlastX LINE_RTE-X 173083 173190 51 - . . scaffold113 GLEAN mRNA 247258 247302 1 - . ID=CGI_10021289; scaffold113 TRF Tandem_Repeat 247258 247302 90 + . . scaffold113 GLEAN mRNA 250230 250334 1 - . ID=CGI_10021289; scaffold113 TRF Tandem_Repeat 250230 250334 93 + . . scaffold113 GLEAN mRNA 250533 250642 1 - . ID=CGI_10021289; scaffold113 TRF Tandem_Repeat 250533 250642 78 + . . scaffold113 GLEAN mRNA 250534 250642 1 - . ID=CGI_10021289; scaffold113 TRF Tandem_Repeat 250534 250642 107 + . . scaffold113 GLEAN mRNA 251490 251549 1 - . ID=CGI_10021289; scaffold113 TRF Tandem_Repeat 251490 251549 120 + . . scaffold113 GLEAN mRNA 252586 253209 1 - . ID=CGI_10021289; scaffold113 WUBlastX LINE_L1-Tx1 252586 253209 132 - . . scaffold113 GLEAN mRNA 253217 253645 1 - . ID=CGI_10021289; scaffold113 WUBlastX LINE_L1-Tx1 253217 253645 48 - . . scaffold113 GLEAN mRNA 281905 282003 0.996743 + . ID=CGI_10021291; scaffold113 TRF Tandem_Repeat 281905 282003 51 + . . scaffold113 GLEAN mRNA 281926 282008 0.996743 + . ID=CGI_10021291; scaffold113 TRF Tandem_Repeat 281926 282008 89 + . . scaffold113 GLEAN mRNA 283248 283294 0.996743 + . ID=CGI_10021291; scaffold113 TRF Tandem_Repeat 283248 283294 94 + . . scaffold113 GLEAN mRNA 285803 285908 0.996743 + . ID=CGI_10021291; scaffold113 TRF Tandem_Repeat 285803 285908 83 + . . scaffold113 GLEAN mRNA 285827 285908 0.996743 + . ID=CGI_10021291; scaffold113 TRF Tandem_Repeat 285827 285908 65 + . . scaffold113 GLEAN mRNA 285803 285936 0.996743 + . ID=CGI_10021291; scaffold113 TRF Tandem_Repeat 285803 285936 72 + . . scaffold113 GLEAN mRNA 287078 287183 0.996743 + . ID=CGI_10021291; scaffold113 TRF Tandem_Repeat 287078 287183 83 + . . scaffold113 GLEAN mRNA 287102 287183 0.996743 + . ID=CGI_10021291; scaffold113 TRF Tandem_Repeat 287102 287183 65 + . . scaffold113 GLEAN mRNA 287078 287211 0.996743 + . ID=CGI_10021291; scaffold113 TRF Tandem_Repeat 287078 287211 72 + . . scaffold113 GLEAN mRNA 306458 306514 0.996743 + . ID=CGI_10021291; scaffold113 TRF Tandem_Repeat 306458 306514 96 + . . scaffold113 GLEAN mRNA 322287 322366 0.705361 - . ID=CGI_10021292; scaffold113 TRF Tandem_Repeat 322287 322366 142 + . . scaffold113 GLEAN mRNA 339723 339827 0.705361 - . ID=CGI_10021292; scaffold113 TRF Tandem_Repeat 339723 339827 110 + . . scaffold113 GLEAN mRNA 339727 339826 0.705361 - . ID=CGI_10021292; scaffold113 TRF Tandem_Repeat 339727 339826 119 + . . scaffold113 GLEAN mRNA 342653 342714 0.705361 - . ID=CGI_10021292; scaffold113 TRF Tandem_Repeat 342653 342714 124 + . . scaffold113 GLEAN mRNA 588527 588730 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_MuDR 588527 588730 53 - . . scaffold113 GLEAN mRNA 582164 582379 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_MuDR 582164 582379 30 - . . scaffold113 GLEAN mRNA 589474 589635 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_MuDR 589474 589635 24 - . . scaffold113 GLEAN mRNA 588750 588962 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_MuDR 588750 588962 99 - . . scaffold113 GLEAN mRNA 589504 589641 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_MuDR 589504 589641 56 - . . scaffold113 GLEAN mRNA 582119 582379 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_MuDR 582119 582379 29 - . . scaffold113 GLEAN mRNA 590403 590738 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_hAT-Ac 590403 590738 72 - . . scaffold113 GLEAN mRNA 590382 590807 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_hAT-Tag1 590382 590951 70 - . . scaffold113 GLEAN mRNA 590020 590142 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_MuDR 590020 590142 20 - . . scaffold113 GLEAN mRNA 590418 590606 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_hAT-Ac 590418 590606 73 - . . scaffold113 GLEAN mRNA 590418 590549 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_hAT-Hobo 590418 590549 75 - . . scaffold113 GLEAN mRNA 589623 590009 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_MuDR 589623 590009 104 - . . scaffold113 GLEAN mRNA 589683 590009 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_MuDR 589683 590009 136 - . . scaffold113 GLEAN mRNA 599545 599637 1 - . ID=CGI_10021295; scaffold113 TRF Tandem_Repeat 599545 599637 170 + . . scaffold113 GLEAN mRNA 599532 599636 1 - . ID=CGI_10021295; scaffold113 TRF Tandem_Repeat 599532 599636 131 + . . scaffold113 GLEAN mRNA 600188 600245 1 - . ID=CGI_10021295; scaffold113 TRF Tandem_Repeat 600188 600245 109 + . . scaffold113 GLEAN mRNA 608833 608864 0.993237 + . ID=CGI_10021296; scaffold113 TRF Tandem_Repeat 608833 608864 55 + . . scaffold113 GLEAN mRNA 616962 617630 0.993341 - . ID=CGI_10021297; scaffold113 WUBlastX LINE_CR1 616962 617630 248 - . . scaffold113 GLEAN mRNA 616232 616393 0.993341 - . ID=CGI_10021297; scaffold113 WUBlastX LINE_L2-Hydra 616232 616393 23 - . . scaffold113 GLEAN mRNA 612491 616147 0.993341 - . ID=CGI_10021297; scaffold113 WUBlastX LINE_L1-Tx1 612491 616147 1090 - . . scaffold113 GLEAN mRNA 629940 629975 1 - . ID=CGI_10021299; scaffold113 TRF Tandem_Repeat 629940 629975 72 + . . scaffold113 GLEAN mRNA 653033 653093 0.739248 + . ID=CGI_10021300; scaffold113 TRF Tandem_Repeat 653033 653093 122 + . . scaffold175 GLEAN mRNA 65677 66042 0.999661 + . ID=CGI_10021303; scaffold175 WUBlastX LTR_Gypsy 65677 66042 23 + . . scaffold175 GLEAN mRNA 89134 89208 0.927941 + . ID=CGI_10021306; scaffold175 TRF Tandem_Repeat 89134 89208 118 + . . scaffold175 GLEAN mRNA 112066 112172 0.991212 + . ID=CGI_10021308; scaffold175 TRF Tandem_Repeat 112066 112172 80 + . . scaffold175 GLEAN mRNA 113249 113280 0.991212 + . ID=CGI_10021308; scaffold175 TRF Tandem_Repeat 113249 113280 64 + . . scaffold175 GLEAN mRNA 118292 118336 0.991212 + . ID=CGI_10021308; scaffold175 TRF Tandem_Repeat 118292 118336 72 + . . scaffold175 GLEAN mRNA 121445 121474 0.991212 + . ID=CGI_10021308; scaffold175 TRF Tandem_Repeat 121445 121474 60 + . . scaffold175 GLEAN mRNA 160311 161189 0.999624 + . ID=CGI_10021311; scaffold175 WUBlastX LINE_Penelope 160311 161189 79 + . . scaffold175 GLEAN mRNA 160455 161198 0.999624 + . ID=CGI_10021311; scaffold175 WUBlastX LINE_Penelope 160455 161198 274 + . . scaffold175 GLEAN mRNA 179167 180891 0.68151 + . ID=CGI_10021312; scaffold175 TRF Tandem_Repeat 179167 180891 2114 + . . scaffold175 GLEAN mRNA 195536 195573 0.610235 + . ID=CGI_10021314; scaffold175 TRF Tandem_Repeat 195536 195573 51 + . . scaffold175 GLEAN mRNA 195770 196768 0.610235 + . ID=CGI_10021314; scaffold175 TRF Tandem_Repeat 195770 196768 1261 + . . scaffold175 GLEAN mRNA 244129 245274 0.999907 + . ID=CGI_10021317; scaffold175 WUBlastX LINE_L1 244129 245274 450 + . . scaffold175 GLEAN mRNA 246939 247727 0.999907 + . ID=CGI_10021317; scaffold175 WUBlastX LINE_L1-Tx1 246939 247727 79 + . . scaffold175 GLEAN mRNA 245267 246748 0.999907 + . ID=CGI_10021317; scaffold175 WUBlastX LINE_L1 245267 246748 836 + . . scaffold175 GLEAN mRNA 310880 310950 1 + . ID=CGI_10021318; scaffold175 TRF Tandem_Repeat 310880 310950 115 + . . scaffold175 GLEAN mRNA 309251 309415 1 + . ID=CGI_10021318; scaffold175 WUBlastX LINE_RTE-X 309251 309415 71 + . . scaffold175 GLEAN mRNA 311780 312407 1 + . ID=CGI_10021318; scaffold175 TRF Tandem_Repeat 311780 312407 854 + . . scaffold175 GLEAN mRNA 326270 326391 0.999994 - . ID=CGI_10021321; scaffold175 TRF Tandem_Repeat 326270 326391 208 + . . scaffold175 GLEAN mRNA 329677 330171 0.999994 - . ID=CGI_10021321; scaffold175 WUBlastX LINE_Penelope 329677 330171 94 + . . scaffold175 GLEAN mRNA 368169 368218 1 + . ID=CGI_10021323; scaffold175 TRF Tandem_Repeat 368169 368218 82 + . . scaffold175 GLEAN mRNA 377469 377554 0.937358 + . ID=CGI_10021324; scaffold175 TRF Tandem_Repeat 377469 377554 100 + . . scaffold175 GLEAN mRNA 394435 394470 0.934391 + . ID=CGI_10021326; scaffold175 TRF Tandem_Repeat 394435 394470 63 + . . scaffold175 GLEAN mRNA 396288 396334 0.934391 + . ID=CGI_10021326; scaffold175 TRF Tandem_Repeat 396288 396334 94 + . . scaffold175 GLEAN mRNA 408951 409221 0.647278 + . ID=CGI_10021327; scaffold175 TRF Tandem_Repeat 408951 409221 348 + . . scaffold175 GLEAN mRNA 420572 420633 0.998389 + . ID=CGI_10021328; scaffold175 TRF Tandem_Repeat 420572 420633 124 + . . scaffold175 GLEAN mRNA 433382 434522 0.752622 - . ID=CGI_10021330; scaffold175 TRF Tandem_Repeat 433382 434522 1570 + . . scaffold175 GLEAN mRNA 444495 444783 0.937811 + . ID=CGI_10021331; scaffold175 TRF Tandem_Repeat 444495 444783 353 + . . scaffold175 GLEAN mRNA 444495 444817 0.937811 + . ID=CGI_10021331; scaffold175 TRF Tandem_Repeat 444495 444817 229 + . . scaffold175 GLEAN mRNA 444716 444797 0.937811 + . ID=CGI_10021331; scaffold175 TRF Tandem_Repeat 444716 444797 110 + . . scaffold175 GLEAN mRNA 446046 446722 0.937811 + . ID=CGI_10021331; scaffold175 TRF Tandem_Repeat 446046 446722 1087 + . . scaffold175 GLEAN mRNA 457613 457733 0.999324 + . ID=CGI_10021333; scaffold175 TRF Tandem_Repeat 457613 457733 75 + . . scaffold175 GLEAN mRNA 457621 457838 0.999324 + . ID=CGI_10021333; scaffold175 TRF Tandem_Repeat 457621 457838 235 + . . scaffold175 GLEAN mRNA 457646 457839 0.999324 + . ID=CGI_10021333; scaffold175 TRF Tandem_Repeat 457646 457839 141 + . . scaffold175 GLEAN mRNA 457646 457877 0.999324 + . ID=CGI_10021333; scaffold175 TRF Tandem_Repeat 457646 457877 252 + . . scaffold175 GLEAN mRNA 457682 457877 0.999324 + . ID=CGI_10021333; scaffold175 TRF Tandem_Repeat 457682 457877 150 + . . scaffold175 GLEAN mRNA 463654 463720 0.999324 + . ID=CGI_10021333; scaffold175 TRF Tandem_Repeat 463654 463720 134 + . . scaffold175 GLEAN mRNA 476813 477712 0.998407 - . ID=CGI_10021334; scaffold175 WUBlastX DNA_IS4EU 476813 477712 104 - . . scaffold175 GLEAN mRNA 476804 477397 0.998407 - . ID=CGI_10021334; scaffold175 WUBlastX DNA_IS4EU 476804 477397 175 - . . scaffold175 GLEAN mRNA 537124 537150 0.999676 - . ID=CGI_10021336; scaffold175 TRF Tandem_Repeat 537124 537150 54 + . . scaffold175 GLEAN mRNA 640572 641814 0.863777 - . ID=CGI_10021337; scaffold175 TRF Tandem_Repeat 640572 641814 2053 + . . scaffold175 GLEAN mRNA 641981 642034 0.863777 - . ID=CGI_10021337; scaffold175 TRF Tandem_Repeat 641981 642034 58 + . . scaffold175 GLEAN mRNA 641981 642034 0.863777 - . ID=CGI_10021337; scaffold175 TRF Tandem_Repeat 641981 642034 58 + . . scaffold175 GLEAN mRNA 642520 642593 0.863777 - . ID=CGI_10021337; scaffold175 TRF Tandem_Repeat 642520 642593 148 + . . scaffold175 GLEAN mRNA 648259 649051 0.863777 - . ID=CGI_10021337; scaffold175 TRF Tandem_Repeat 648259 649051 1157 + . . scaffold175 GLEAN mRNA 649220 649258 0.863777 - . ID=CGI_10021337; scaffold175 TRF Tandem_Repeat 649220 649258 60 + . . scaffold43 GLEAN mRNA 66053 66105 0.62185 + . ID=CGI_10021340; scaffold43 TRF Tandem_Repeat 66053 66105 106 + . . scaffold43 GLEAN mRNA 131635 131670 0.799995 - . ID=CGI_10021341; scaffold43 TRF Tandem_Repeat 131635 131670 54 + . . scaffold43 GLEAN mRNA 134557 134838 1 - . ID=CGI_10021342; scaffold43 WUBlastX DNA_Harbinger 134557 134868 106 - . . scaffold43 GLEAN mRNA 183285 183589 0.726083 - . ID=CGI_10021344; scaffold43 TRF Tandem_Repeat 183285 183589 305 + . . scaffold43 GLEAN mRNA 186432 187054 0.726083 - . ID=CGI_10021344; scaffold43 TRF Tandem_Repeat 186432 187054 738 + . . scaffold43 GLEAN mRNA 186432 187047 0.726083 - . ID=CGI_10021344; scaffold43 TRF Tandem_Repeat 186432 187047 846 + . . scaffold43 GLEAN mRNA 188727 189265 0.726083 - . ID=CGI_10021344; scaffold43 TRF Tandem_Repeat 188727 189265 711 + . . scaffold43 GLEAN mRNA 221275 221327 0.511765 + . ID=CGI_10021347; scaffold43 TRF Tandem_Repeat 221275 221327 106 + . . scaffold43 GLEAN mRNA 243454 243515 0.394228 - . ID=CGI_10021348; scaffold43 TRF Tandem_Repeat 243454 243515 81 + . . scaffold43 GLEAN mRNA 261989 262027 0.670567 + . ID=CGI_10021350; scaffold43 TRF Tandem_Repeat 261989 262027 53 + . . scaffold43 GLEAN mRNA 265389 265415 0.670567 + . ID=CGI_10021350; scaffold43 TRF Tandem_Repeat 265389 265415 54 + . . scaffold43 GLEAN mRNA 265467 265513 0.670567 + . ID=CGI_10021350; scaffold43 TRF Tandem_Repeat 265467 265513 87 + . . scaffold43 GLEAN mRNA 266621 266690 0.670567 + . ID=CGI_10021350; scaffold43 TRF Tandem_Repeat 266621 266690 122 + . . scaffold43 GLEAN mRNA 352691 352720 0.140322 - . ID=CGI_10021353; scaffold43 TRF Tandem_Repeat 352691 352720 51 + . . scaffold43 GLEAN mRNA 353048 353103 0.140322 - . ID=CGI_10021353; scaffold43 TRF Tandem_Repeat 353048 353103 85 + . . scaffold43 GLEAN mRNA 353431 353504 0.140322 - . ID=CGI_10021353; scaffold43 TRF Tandem_Repeat 353431 353504 130 + . . scaffold43 GLEAN mRNA 356652 356691 0.140322 - . ID=CGI_10021353; scaffold43 TRF Tandem_Repeat 356652 356691 71 + . . scaffold43 GLEAN mRNA 372991 373090 0.378374 - . ID=CGI_10021354; scaffold43 TRF Tandem_Repeat 372991 373090 191 + . . scaffold43 GLEAN mRNA 374393 374492 0.378374 - . ID=CGI_10021354; scaffold43 TRF Tandem_Repeat 374393 374492 191 + . . scaffold43 GLEAN mRNA 377165 377209 0.378374 - . ID=CGI_10021354; scaffold43 TRF Tandem_Repeat 377165 377209 65 + . . scaffold43 GLEAN mRNA 378907 379056 0.378374 - . ID=CGI_10021354; scaffold43 WUBlastX LTR_Gypsy 378907 379185 32 + . . scaffold43 GLEAN mRNA 386997 387087 0.256408 - . ID=CGI_10021355; scaffold43 TRF Tandem_Repeat 386997 387087 137 + . . scaffold43 GLEAN mRNA 387053 387142 0.256408 - . ID=CGI_10021355; scaffold43 TRF Tandem_Repeat 387053 387142 99 + . . scaffold43 GLEAN mRNA 388595 388701 0.256408 - . ID=CGI_10021355; scaffold43 TRF Tandem_Repeat 388595 388701 133 + . . scaffold43 GLEAN mRNA 390173 390405 0.256408 - . ID=CGI_10021355; scaffold43 TRF Tandem_Repeat 390173 390405 217 + . . scaffold43 GLEAN mRNA 390173 390405 0.256408 - . ID=CGI_10021355; scaffold43 TRF Tandem_Repeat 390173 390405 202 + . . scaffold43 GLEAN mRNA 390151 390364 0.256408 - . ID=CGI_10021355; scaffold43 TRF Tandem_Repeat 390151 390364 105 + . . scaffold43 GLEAN mRNA 396033 396072 0.256408 - . ID=CGI_10021355; scaffold43 TRF Tandem_Repeat 396033 396072 80 + . . scaffold43 GLEAN mRNA 399760 399948 0.256408 - . ID=CGI_10021355; scaffold43 TRF Tandem_Repeat 399760 399948 78 + . . scaffold43 GLEAN mRNA 405883 405922 0.256408 - . ID=CGI_10021355; scaffold43 TRF Tandem_Repeat 405883 405922 71 + . . scaffold43 GLEAN mRNA 393741 394193 0.256408 - . ID=CGI_10021355; scaffold43 WUBlastX LINE_RTE-X 393741 394193 173 - . . scaffold43 GLEAN mRNA 393756 394301 0.256408 - . ID=CGI_10021355; scaffold43 WUBlastX LINE_RTE-X 393756 394301 173 - . . scaffold43 GLEAN mRNA 412639 413640 0.256408 - . ID=CGI_10021355; scaffold43 WUBlastX DNA_TcMar-Tc1 412639 413640 439 + . . scaffold43 GLEAN mRNA 408804 409633 0.256408 - . ID=CGI_10021355; scaffold43 TRF Tandem_Repeat 408804 409633 781 + . . scaffold43 GLEAN mRNA 539334 539567 1 - . ID=CGI_10021358; scaffold43 WUBlastX LINE_L2 539334 539567 21 - . . scaffold43 GLEAN mRNA 547638 547715 0.309072 + . ID=CGI_10021359; scaffold43 TRF Tandem_Repeat 547638 547715 81 + . . scaffold43 GLEAN mRNA 551554 551669 0.167699 - . ID=CGI_10021360; scaffold43 TRF Tandem_Repeat 551554 551669 196 + . . scaffold43 GLEAN mRNA 552184 552299 0.167699 - . ID=CGI_10021360; scaffold43 TRF Tandem_Repeat 552184 552299 196 + . . scaffold43 GLEAN mRNA 553825 553884 0.167699 - . ID=CGI_10021360; scaffold43 TRF Tandem_Repeat 553825 553884 120 + . . scaffold43 GLEAN mRNA 570172 570201 0.807709 - . ID=CGI_10021361; scaffold43 TRF Tandem_Repeat 570172 570201 60 + . . scaffold43 GLEAN mRNA 572988 573041 0.807709 - . ID=CGI_10021361; scaffold43 TRF Tandem_Repeat 572988 573041 108 + . . scaffold43 GLEAN mRNA 577641 577677 0.807709 - . ID=CGI_10021361; scaffold43 TRF Tandem_Repeat 577641 577677 65 + . . scaffold43 GLEAN mRNA 574597 574812 0.807709 - . ID=CGI_10021361; scaffold43 WUBlastX LINE_RTE-X 574597 574812 128 + . . scaffold43 GLEAN mRNA 574468 574809 0.807709 - . ID=CGI_10021361; scaffold43 WUBlastX LINE_L1 574468 574809 74 + . . scaffold43 GLEAN mRNA 574549 574812 0.807709 - . ID=CGI_10021361; scaffold43 WUBlastX LINE_RTE-X 574549 574812 85 + . . scaffold43 GLEAN mRNA 607631 607833 0.998828 - . ID=CGI_10021364; scaffold43 TRF Tandem_Repeat 607631 607833 298 + . . scaffold43 GLEAN mRNA 649549 649596 0.987447 - . ID=CGI_10021365; scaffold43 TRF Tandem_Repeat 649549 649596 96 + . . scaffold43 GLEAN mRNA 652890 652978 0.987447 - . ID=CGI_10021365; scaffold43 TRF Tandem_Repeat 652890 652978 79 + . . scaffold43 GLEAN mRNA 652891 652978 0.987447 - . ID=CGI_10021365; scaffold43 TRF Tandem_Repeat 652891 652978 95 + . . scaffold115 GLEAN mRNA 8144 8191 0.99988 - . ID=CGI_10021369; scaffold115 TRF Tandem_Repeat 8144 8191 87 + . . scaffold115 GLEAN mRNA 8144 8191 1 + . ID=CGI_10021370; scaffold115 TRF Tandem_Repeat 8144 8191 87 + . . scaffold115 GLEAN mRNA 26034 26060 0.612228 - . ID=CGI_10021371; scaffold115 TRF Tandem_Repeat 26034 26060 54 + . . scaffold115 GLEAN mRNA 31843 31875 0.612228 - . ID=CGI_10021371; scaffold115 TRF Tandem_Repeat 31843 31875 50 + . . scaffold115 GLEAN mRNA 41020 41066 0.820164 - . ID=CGI_10021372; scaffold115 TRF Tandem_Repeat 41020 41066 94 + . . scaffold115 GLEAN mRNA 47222 47289 0.966032 - . ID=CGI_10021374; scaffold115 TRF Tandem_Repeat 47222 47289 127 + . . scaffold115 GLEAN mRNA 129499 129840 1 - . ID=CGI_10021378; scaffold115 WUBlastX DNA_hAT-Tip100 129499 129840 94 + . . scaffold115 GLEAN mRNA 129382 129834 1 - . ID=CGI_10021378; scaffold115 WUBlastX DNA_hAT-Tip100 129382 129834 79 + . . scaffold115 GLEAN mRNA 129845 130600 1 - . ID=CGI_10021378; scaffold115 WUBlastX LINE_RTE-X 129845 130600 159 - . . scaffold115 GLEAN mRNA 130720 131259 1 - . ID=CGI_10021378; scaffold115 WUBlastX LINE_L1 130720 131259 224 - . . scaffold115 GLEAN mRNA 130639 131175 1 - . ID=CGI_10021378; scaffold115 WUBlastX LINE_L1 130639 131175 65 - . . scaffold115 GLEAN mRNA 187235 187307 0.994579 + . ID=CGI_10021383; scaffold115 TRF Tandem_Repeat 187235 187307 110 + . . scaffold115 GLEAN mRNA 188060 188087 0.994579 + . ID=CGI_10021383; scaffold115 TRF Tandem_Repeat 188060 188087 56 + . . scaffold115 GLEAN mRNA 187695 187859 0.994579 + . ID=CGI_10021383; scaffold115 WUBlastX LINE_RTE-BovB 187695 187859 133 + . . scaffold115 GLEAN mRNA 437775 437814 0.999947 - . ID=CGI_10021394; scaffold115 TRF Tandem_Repeat 437775 437814 80 + . . scaffold115 GLEAN mRNA 439163 439208 0.999947 - . ID=CGI_10021394; scaffold115 TRF Tandem_Repeat 439163 439208 92 + . . scaffold115 GLEAN mRNA 475048 475089 1 + . ID=CGI_10021398; scaffold115 TRF Tandem_Repeat 475048 475089 84 + . . scaffold115 GLEAN mRNA 479916 480094 1 + . ID=CGI_10021398; scaffold115 TRF Tandem_Repeat 479916 480094 243 + . . scaffold115 GLEAN mRNA 488016 488058 1 - . ID=CGI_10021399; scaffold115 TRF Tandem_Repeat 488016 488058 86 + . . scaffold115 GLEAN mRNA 488517 488562 1 - . ID=CGI_10021399; scaffold115 TRF Tandem_Repeat 488517 488562 92 + . . scaffold115 GLEAN mRNA 490269 490894 0.986378 - . ID=CGI_10021400; scaffold115 TRF Tandem_Repeat 490269 490894 379 + . . scaffold115 GLEAN mRNA 508742 509207 0.992094 - . ID=CGI_10021402; scaffold115 TRF Tandem_Repeat 508742 509207 359 + . . scaffold115 GLEAN mRNA 512636 512683 0.992094 - . ID=CGI_10021402; scaffold115 TRF Tandem_Repeat 512636 512683 78 + . . scaffold115 GLEAN mRNA 513923 514941 0.992094 - . ID=CGI_10021402; scaffold115 TRF Tandem_Repeat 513923 514941 1320 + . . scaffold115 GLEAN mRNA 513900 514941 0.992094 - . ID=CGI_10021402; scaffold115 TRF Tandem_Repeat 513900 514941 1467 + . . scaffold115 GLEAN mRNA 524479 524735 0.992094 - . ID=CGI_10021402; scaffold115 TRF Tandem_Repeat 524479 524735 381 + . . scaffold115 GLEAN mRNA 532089 532132 0.997171 + . ID=CGI_10021403; scaffold115 TRF Tandem_Repeat 532089 532132 88 + . . scaffold115 GLEAN mRNA 535055 535427 0.997171 + . ID=CGI_10021403; scaffold115 TRF Tandem_Repeat 535055 535427 334 + . . scaffold115 GLEAN mRNA 536406 537106 0.997171 + . ID=CGI_10021403; scaffold115 TRF Tandem_Repeat 536406 537106 1103 + . . scaffold115 GLEAN mRNA 555985 556116 1 + . ID=CGI_10021404; scaffold115 TRF Tandem_Repeat 555985 556116 228 + . . scaffold115 GLEAN mRNA 556548 556619 1 + . ID=CGI_10021404; scaffold115 TRF Tandem_Repeat 556548 556619 126 + . . scaffold115 GLEAN mRNA 561113 561145 1 + . ID=CGI_10021404; scaffold115 TRF Tandem_Repeat 561113 561145 50 + . . scaffold115 GLEAN mRNA 561167 561209 1 + . ID=CGI_10021404; scaffold115 TRF Tandem_Repeat 561167 561209 86 + . . scaffold115 GLEAN mRNA 577836 577885 0.845977 + . ID=CGI_10021407; scaffold115 TRF Tandem_Repeat 577836 577885 84 + . . scaffold115 GLEAN mRNA 581054 581323 0.845977 + . ID=CGI_10021407; scaffold115 WUBlastX LINE_CR1-L2 581054 581323 63 + . . scaffold115 GLEAN mRNA 581054 581371 0.845977 + . ID=CGI_10021407; scaffold115 WUBlastX LINE_CR1-L2 581054 581371 58 + . . scaffold115 GLEAN mRNA 580695 581072 0.845977 + . ID=CGI_10021407; scaffold115 WUBlastX LINE_CR1-L2 580695 581072 86 + . . scaffold115 GLEAN mRNA 580266 581072 0.845977 + . ID=CGI_10021407; scaffold115 WUBlastX LINE_L2 580266 581072 72 + . . scaffold115 GLEAN mRNA 621212 621247 0.999676 + . ID=CGI_10021409; scaffold115 TRF Tandem_Repeat 621212 621247 63 + . . scaffold115 GLEAN mRNA 622375 622459 0.999676 + . ID=CGI_10021409; scaffold115 TRF Tandem_Repeat 622375 622459 143 + . . scaffold115 GLEAN mRNA 628530 629052 0.999676 + . ID=CGI_10021409; scaffold115 TRF Tandem_Repeat 628530 629052 455 + . . scaffold115 GLEAN mRNA 625843 626160 0.999676 + . ID=CGI_10021409; scaffold115 WUBlastX DNA_IS4EU 625843 626160 58 - . . scaffold115 GLEAN mRNA 624012 624152 0.999676 + . ID=CGI_10021409; scaffold115 WUBlastX DNA_TcMar-Marin 624012 624152 38 + . . scaffold115 GLEAN mRNA 624054 624170 0.999676 + . ID=CGI_10021409; scaffold115 WUBlastX DNA_TcMar-Marin 624054 624170 36 + . . scaffold115 GLEAN mRNA 624640 624714 0.999676 + . ID=CGI_10021409; scaffold115 WUBlastX DNA_TcMar-Marin 624640 624714 28 + . . scaffold115 GLEAN mRNA 641063 641166 0.999185 - . ID=CGI_10021410; scaffold115 TRF Tandem_Repeat 641063 641166 62 + . . scaffold115 GLEAN mRNA 641063 641166 0.999185 - . ID=CGI_10021410; scaffold115 TRF Tandem_Repeat 641063 641166 58 + . . scaffold115 GLEAN mRNA 642596 643378 0.999185 - . ID=CGI_10021410; scaffold115 TRF Tandem_Repeat 642596 643378 1230 + . . scaffold115 GLEAN mRNA 642596 643378 0.999185 - . ID=CGI_10021410; scaffold115 TRF Tandem_Repeat 642596 643378 1239 + . . scaffold115 GLEAN mRNA 645935 646292 0.999185 - . ID=CGI_10021410; scaffold115 TRF Tandem_Repeat 645935 646292 167 + . . scaffold115 GLEAN mRNA 645997 646328 0.999185 - . ID=CGI_10021410; scaffold115 TRF Tandem_Repeat 645997 646328 558 + . . scaffold115 GLEAN mRNA 649848 649971 0.999185 - . ID=CGI_10021410; scaffold115 TRF Tandem_Repeat 649848 649971 160 + . . scaffold676 GLEAN mRNA 45020 46176 0.378713 + . ID=CGI_10021414; scaffold676 TRF Tandem_Repeat 45020 46176 940 + . . scaffold676 GLEAN mRNA 46692 46737 0.378713 + . ID=CGI_10021414; scaffold676 TRF Tandem_Repeat 46692 46737 92 + . . scaffold676 GLEAN mRNA 121113 121183 0.997946 + . ID=CGI_10021417; scaffold676 TRF Tandem_Repeat 121113 121183 142 + . . scaffold676 GLEAN mRNA 132319 132363 0.996279 - . ID=CGI_10021418; scaffold676 TRF Tandem_Repeat 132319 132363 74 + . . scaffold676 GLEAN mRNA 132317 132367 0.996279 - . ID=CGI_10021418; scaffold676 TRF Tandem_Repeat 132317 132367 81 + . . scaffold676 GLEAN mRNA 139318 139403 0.996279 - . ID=CGI_10021418; scaffold676 TRF Tandem_Repeat 139318 139403 172 + . . scaffold676 GLEAN mRNA 158315 159325 0.999675 - . ID=CGI_10021419; scaffold676 TRF Tandem_Repeat 158315 159325 1473 + . . scaffold676 GLEAN mRNA 164884 164941 0.999675 - . ID=CGI_10021419; scaffold676 TRF Tandem_Repeat 164884 164941 100 + . . scaffold676 GLEAN mRNA 169656 169699 0.999675 - . ID=CGI_10021419; scaffold676 TRF Tandem_Repeat 169656 169699 88 + . . scaffold676 GLEAN mRNA 171084 171129 0.999675 - . ID=CGI_10021419; scaffold676 TRF Tandem_Repeat 171084 171129 92 + . . scaffold676 GLEAN mRNA 176631 176671 0.999307 - . ID=CGI_10021420; scaffold676 TRF Tandem_Repeat 176631 176671 73 + . . scaffold676 GLEAN mRNA 177769 177820 0.999307 - . ID=CGI_10021420; scaffold676 TRF Tandem_Repeat 177769 177820 104 + . . scaffold676 GLEAN mRNA 253846 253891 0.999129 + . ID=CGI_10021424; scaffold676 TRF Tandem_Repeat 253846 253891 92 + . . scaffold676 GLEAN mRNA 427392 427742 0.984027 + . ID=CGI_10021426; scaffold676 WUBlastX RC_Helitron 427392 427742 56 + . . scaffold676 GLEAN mRNA 451088 451147 0.39659 - . ID=CGI_10021428; scaffold676 TRF Tandem_Repeat 451088 451147 78 + . . scaffold676 GLEAN mRNA 490867 491106 0.841203 + . ID=CGI_10021429; scaffold676 TRF Tandem_Repeat 490867 491106 257 + . . scaffold676 GLEAN mRNA 560282 560385 0.378138 + . ID=CGI_10021432; scaffold676 TRF Tandem_Repeat 560282 560385 199 + . . scaffold676 GLEAN mRNA 568457 568719 0.378138 + . ID=CGI_10021432; scaffold676 TRF Tandem_Repeat 568457 568719 229 + . . scaffold676 GLEAN mRNA 576812 577003 0.378138 + . ID=CGI_10021432; scaffold676 WUBlastX LINE_RTE-BovB 576812 577003 91 - . . scaffold676 GLEAN mRNA 577030 577305 0.378138 + . ID=CGI_10021432; scaffold676 WUBlastX LINE_RTE-X 577030 577305 148 - . . scaffold676 GLEAN mRNA 576298 576459 0.378138 + . ID=CGI_10021432; scaffold676 WUBlastX LINE_RTE-X 576298 576459 64 - . . scaffold676 GLEAN mRNA 576298 576432 0.378138 + . ID=CGI_10021432; scaffold676 WUBlastX LINE_RTE-X 576298 576432 69 - . . scaffold676 GLEAN mRNA 576644 576913 0.378138 + . ID=CGI_10021432; scaffold676 WUBlastX LINE_RTE-X 576644 576913 28 - . . scaffold676 GLEAN mRNA 576220 576435 0.378138 + . ID=CGI_10021432; scaffold676 WUBlastX LINE_RTE-X 576220 576435 38 - . . scaffold676 GLEAN mRNA 576773 577015 0.378138 + . ID=CGI_10021432; scaffold676 WUBlastX LINE_RTE-X 576773 577015 75 - . . scaffold676 GLEAN mRNA 576707 577021 0.378138 + . ID=CGI_10021432; scaffold676 WUBlastX LINE_RTE-X 576707 577021 66 - . . scaffold676 GLEAN mRNA 576166 576435 0.378138 + . ID=CGI_10021432; scaffold676 WUBlastX LINE_RTE-X 576166 576435 38 - . . scaffold676 GLEAN mRNA 591714 591806 0.378138 + . ID=CGI_10021432; scaffold676 TRF Tandem_Repeat 591714 591806 105 + . . scaffold676 GLEAN mRNA 594361 594452 0.378138 + . ID=CGI_10021432; scaffold676 TRF Tandem_Repeat 594361 594452 58 + . . scaffold676 GLEAN mRNA 594357 594449 0.378138 + . ID=CGI_10021432; scaffold676 TRF Tandem_Repeat 594357 594449 80 + . . scaffold664 GLEAN mRNA 10712 10749 0.999993 + . ID=CGI_10021433; scaffold664 TRF Tandem_Repeat 10712 10749 58 + . . scaffold664 GLEAN mRNA 56849 56854 0.572692 + . ID=CGI_10021434; scaffold664 TRF Tandem_Repeat 56849 57072 326 + . . scaffold664 GLEAN mRNA 56849 56854 0.572692 + . ID=CGI_10021434; scaffold664 TRF Tandem_Repeat 56849 57072 285 + . . scaffold664 GLEAN mRNA 72888 72916 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 72888 72916 58 + . . scaffold664 GLEAN mRNA 74759 74816 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 74759 74816 62 + . . scaffold664 GLEAN mRNA 94177 94292 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 94177 94292 87 + . . scaffold664 GLEAN mRNA 94160 94480 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 94160 94480 132 + . . scaffold664 GLEAN mRNA 94270 94470 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 94270 94470 179 + . . scaffold664 GLEAN mRNA 94162 94296 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 94162 94296 115 + . . scaffold664 GLEAN mRNA 94378 94468 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 94378 94468 73 + . . scaffold664 GLEAN mRNA 94614 94791 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 94614 94791 286 + . . scaffold664 GLEAN mRNA 94924 95206 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 94924 95206 566 + . . scaffold664 GLEAN mRNA 96962 97083 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 96962 97083 158 + . . scaffold664 GLEAN mRNA 99010 99182 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 99010 99182 175 + . . scaffold664 GLEAN mRNA 102372 102459 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 102372 102459 90 + . . scaffold664 GLEAN mRNA 103527 104189 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 103527 104189 684 + . . scaffold664 GLEAN mRNA 103527 104186 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 103527 104186 697 + . . scaffold664 GLEAN mRNA 103528 104189 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 103528 104189 821 + . . scaffold664 GLEAN mRNA 105589 105700 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 105589 105700 79 + . . scaffold664 GLEAN mRNA 114460 114500 0.84608 - . ID=CGI_10021436; scaffold664 TRF Tandem_Repeat 114460 114500 64 + . . scaffold664 GLEAN mRNA 126946 126977 0.999676 + . ID=CGI_10021437; scaffold664 TRF Tandem_Repeat 126946 126977 64 + . . scaffold664 GLEAN mRNA 137647 137702 0.999676 + . ID=CGI_10021437; scaffold664 TRF Tandem_Repeat 137647 137702 112 + . . scaffold664 GLEAN mRNA 146590 146718 0.999675 - . ID=CGI_10021438; scaffold664 TRF Tandem_Repeat 146590 146718 197 + . . scaffold664 GLEAN mRNA 148591 148672 0.999675 - . ID=CGI_10021438; scaffold664 TRF Tandem_Repeat 148591 148672 121 + . . scaffold664 GLEAN mRNA 148697 148732 0.999675 - . ID=CGI_10021438; scaffold664 TRF Tandem_Repeat 148697 148732 72 + . . scaffold664 GLEAN mRNA 218200 218229 0.897817 + . ID=CGI_10021440; scaffold664 TRF Tandem_Repeat 218200 218229 51 + . . scaffold664 GLEAN mRNA 218200 218250 0.897817 + . ID=CGI_10021440; scaffold664 TRF Tandem_Repeat 218200 218250 66 + . . scaffold664 GLEAN mRNA 218207 218249 0.897817 + . ID=CGI_10021440; scaffold664 TRF Tandem_Repeat 218207 218249 50 + . . scaffold664 GLEAN mRNA 226223 226311 0.897817 + . ID=CGI_10021440; scaffold664 TRF Tandem_Repeat 226223 226311 162 + . . scaffold664 GLEAN mRNA 215463 216107 0.897817 + . ID=CGI_10021440; scaffold664 WUBlastX DNA_Sola 215463 216107 145 + . . scaffold664 GLEAN mRNA 215370 216005 0.897817 + . ID=CGI_10021440; scaffold664 WUBlastX DNA_Sola 215370 216005 172 + . . scaffold664 GLEAN mRNA 213415 215217 0.897817 + . ID=CGI_10021440; scaffold664 WUBlastX DNA_Sola 213358 215217 845 + . . scaffold664 GLEAN mRNA 221013 221303 0.897817 + . ID=CGI_10021440; scaffold664 WUBlastX LINE_CR1 221013 221303 74 - . . scaffold664 GLEAN mRNA 220944 221450 0.897817 + . ID=CGI_10021440; scaffold664 WUBlastX LINE_L1-Tx1 220944 221450 29 - . . scaffold664 GLEAN mRNA 264244 264293 0.999676 + . ID=CGI_10021443; scaffold664 TRF Tandem_Repeat 264244 264293 100 + . . scaffold664 GLEAN mRNA 265686 265833 0.999676 + . ID=CGI_10021443; scaffold664 TRF Tandem_Repeat 265686 265833 122 + . . scaffold664 GLEAN mRNA 265686 265833 0.999676 + . ID=CGI_10021443; scaffold664 TRF Tandem_Repeat 265686 265833 122 + . . scaffold664 GLEAN mRNA 285738 285784 0.999667 + . ID=CGI_10021444; scaffold664 TRF Tandem_Repeat 285738 285784 85 + . . scaffold664 GLEAN mRNA 304429 304548 0.67043 + . ID=CGI_10021446; scaffold664 TRF Tandem_Repeat 304429 304548 163 + . . scaffold664 GLEAN mRNA 305486 305639 0.67043 + . ID=CGI_10021446; scaffold664 TRF Tandem_Repeat 305486 305639 68 + . . scaffold664 GLEAN mRNA 305572 305685 0.67043 + . ID=CGI_10021446; scaffold664 TRF Tandem_Repeat 305572 305685 113 + . . scaffold664 GLEAN mRNA 302359 302604 0.67043 + . ID=CGI_10021446; scaffold664 WUBlastX LTR_Ngaro 302359 302604 139 - . . scaffold664 GLEAN mRNA 377056 377326 0.330346 - . ID=CGI_10021447; scaffold664 TRF Tandem_Repeat 377056 377326 506 + . . scaffold664 GLEAN mRNA 393287 393658 0.330346 - . ID=CGI_10021447; scaffold664 WUBlastX DNA_Harbinger 393287 393658 125 - . . scaffold664 GLEAN mRNA 393919 394272 0.330346 - . ID=CGI_10021447; scaffold664 WUBlastX DNA_TcMar-Tc1 393919 394272 107 - . . scaffold664 GLEAN mRNA 394187 394393 0.330346 - . ID=CGI_10021447; scaffold664 WUBlastX DNA_TcMar-Marin 394187 394393 49 - . . scaffold664 GLEAN mRNA 393946 394209 0.330346 - . ID=CGI_10021447; scaffold664 WUBlastX DNA_TcMar-Tc1 393946 394209 128 - . . scaffold664 GLEAN mRNA 393850 394212 0.330346 - . ID=CGI_10021447; scaffold664 WUBlastX DNA_TcMar-Tc1 393850 394212 83 - . . scaffold664 GLEAN mRNA 392824 393309 0.330346 - . ID=CGI_10021447; scaffold664 WUBlastX DNA_Harbinger 392824 393309 174 - . . scaffold664 GLEAN mRNA 443162 443186 0.936514 - . ID=CGI_10021450; scaffold664 TRF Tandem_Repeat 443162 443186 50 + . . scaffold664 GLEAN mRNA 493594 494001 0.556615 - . ID=CGI_10021452; scaffold664 WUBlastX LTR_Gypsy 493594 494001 49 - . . scaffold664 GLEAN mRNA 503216 503419 0.999344 - . ID=CGI_10021453; scaffold664 WUBlastX LINE_RTE-X 503216 503500 76 - . . scaffold664 GLEAN mRNA 503195 503407 0.999344 - . ID=CGI_10021453; scaffold664 WUBlastX LINE_RTE-X 503195 503407 95 - . . scaffold664 GLEAN mRNA 503138 503419 0.999344 - . ID=CGI_10021453; scaffold664 WUBlastX LINE_RTE-X 503138 503503 52 - . . scaffold664 GLEAN mRNA 543660 543670 0.999372 - . ID=CGI_10021455; scaffold664 WUBlastX LTR_Ngaro 543413 543670 76 - . . scaffold664 GLEAN mRNA 550878 551153 0.239728 + . ID=CGI_10021456; scaffold664 WUBlastX DNA_hAT-Tip100 550878 551153 57 + . . scaffold664 GLEAN mRNA 548045 548482 0.239728 + . ID=CGI_10021456; scaffold664 WUBlastX LTR_Gypsy 548045 548482 56 + . . scaffold664 GLEAN mRNA 564980 565005 0.239728 + . ID=CGI_10021456; scaffold664 TRF Tandem_Repeat 564980 565005 52 + . . scaffold664 GLEAN mRNA 570003 570038 0.239728 + . ID=CGI_10021456; scaffold664 TRF Tandem_Repeat 570003 570038 72 + . . scaffold664 GLEAN mRNA 570037 570082 0.239728 + . ID=CGI_10021456; scaffold664 TRF Tandem_Repeat 570037 570082 92 + . . scaffold664 GLEAN mRNA 570080 570126 0.239728 + . ID=CGI_10021456; scaffold664 TRF Tandem_Repeat 570080 570126 85 + . . scaffold664 GLEAN mRNA 558102 558305 0.239728 + . ID=CGI_10021456; scaffold664 WUBlastX DNA_Kolobok-Hyd 558102 558305 52 + . . scaffold664 GLEAN mRNA 573657 573690 0.239728 + . ID=CGI_10021456; scaffold664 TRF Tandem_Repeat 573657 573690 68 + . . scaffold664 GLEAN mRNA 581417 581442 0.239728 + . ID=CGI_10021456; scaffold664 TRF Tandem_Repeat 581417 581442 52 + . . scaffold664 GLEAN mRNA 584205 584292 0.239728 + . ID=CGI_10021456; scaffold664 TRF Tandem_Repeat 584205 584292 113 + . . scaffold664 GLEAN mRNA 584260 584347 0.239728 + . ID=CGI_10021456; scaffold664 TRF Tandem_Repeat 584260 584347 95 + . . scaffold664 GLEAN mRNA 585845 585951 0.239728 + . ID=CGI_10021456; scaffold664 TRF Tandem_Repeat 585845 585951 117 + . . scaffold664 GLEAN mRNA 587870 587954 0.239728 + . ID=CGI_10021456; scaffold664 TRF Tandem_Repeat 587870 587954 161 + . . scaffold664 GLEAN mRNA 578596 578982 0.239728 + . ID=CGI_10021456; scaffold664 WUBlastX LINE_RTE-X 578596 578982 23 - . . scaffold664 GLEAN mRNA 577896 578225 0.239728 + . ID=CGI_10021456; scaffold664 WUBlastX LTR_Ngaro 577896 578225 66 - . . scaffold664 GLEAN mRNA 577636 577947 0.239728 + . ID=CGI_10021456; scaffold664 WUBlastX LTR_Ngaro 577636 577947 70 - . . scaffold664 GLEAN mRNA 590205 590246 0.239728 + . ID=CGI_10021456; scaffold664 TRF Tandem_Repeat 590205 590246 68 + . . scaffold664 GLEAN mRNA 556961 557128 0.239728 + . ID=CGI_10021456; scaffold664 WUBlastX DNA_Kolobok-Hyd 556961 557128 41 + . . scaffold664 GLEAN mRNA 654777 654822 0.986751 + . ID=CGI_10021458; scaffold664 TRF Tandem_Repeat 654777 654822 65 + . . scaffold664 GLEAN mRNA 649991 651130 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX LTR_Pao 649991 651130 1107 - . . scaffold664 GLEAN mRNA 650761 652842 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX LTR_Pao 650761 652842 1367 + . . scaffold664 GLEAN mRNA 648781 649170 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX LTR_Pao 648781 649170 289 + . . scaffold664 GLEAN mRNA 649137 649508 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX LTR_Pao 649137 649508 190 + . . scaffold664 GLEAN mRNA 656777 656941 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX DNA_TcMar-Marin 656777 656941 22 - . . scaffold664 GLEAN mRNA 655927 656016 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX DNA_TcMar-Marin 655927 656016 45 - . . scaffold664 GLEAN mRNA 656069 656146 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX DNA_TcMar-Marin 656069 656146 58 - . . scaffold664 GLEAN mRNA 656718 656783 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX DNA_TcMar-Marin 656718 656783 36 - . . scaffold664 GLEAN mRNA 655994 656299 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX DNA_TcMar-Marin 655994 656299 43 - . . scaffold664 GLEAN mRNA 655994 656161 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX DNA_TcMar-Marin 655994 656161 52 - . . scaffold664 GLEAN mRNA 656884 657039 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX DNA_TcMar-Marin 656884 657039 64 - . . scaffold664 GLEAN mRNA 656090 656176 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX DNA_TcMar-Marin 656090 656176 51 - . . scaffold664 GLEAN mRNA 660282 660518 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX RC_Helitron 660282 660518 40 - . . scaffold664 GLEAN mRNA 660584 660667 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX RC_Helitron 660584 660667 20 - . . scaffold664 GLEAN mRNA 655894 656010 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX DNA_TcMar-Marin 655894 656010 33 - . . scaffold664 GLEAN mRNA 656703 656783 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX DNA_TcMar-Marin 656703 656783 24 - . . scaffold1750 GLEAN mRNA 18560 19204 0.686268 + . ID=CGI_10021461; scaffold1750 WUBlastX LINE_RTE-X 18560 19204 282 + . . scaffold1750 GLEAN mRNA 17462 17530 0.686268 + . ID=CGI_10021461; scaffold1750 WUBlastX LINE_Jockey 17462 17530 24 + . . scaffold1750 GLEAN mRNA 17716 17748 0.686268 + . ID=CGI_10021461; scaffold1750 WUBlastX LINE_RTE-X 17716 17748 24 + . . scaffold1750 GLEAN mRNA 17911 18588 0.686268 + . ID=CGI_10021461; scaffold1750 WUBlastX LINE_RTE-X 17911 18588 429 + . . scaffold1750 GLEAN mRNA 19603 19773 0.686268 + . ID=CGI_10021461; scaffold1750 WUBlastX LINE_RTE-X 19603 19773 30 + . . scaffold1750 GLEAN mRNA 18575 19537 0.686268 + . ID=CGI_10021461; scaffold1750 WUBlastX LINE_RTE-X 18575 19537 115 + . . scaffold1750 GLEAN mRNA 46948 47988 0.622741 + . ID=CGI_10021464; scaffold1750 TRF Tandem_Repeat 46948 47988 1171 + . . scaffold1750 GLEAN mRNA 47762 47911 0.622741 + . ID=CGI_10021464; scaffold1750 TRF Tandem_Repeat 47762 47911 72 + . . scaffold1750 GLEAN mRNA 47125 48119 0.622741 + . ID=CGI_10021464; scaffold1750 TRF Tandem_Repeat 47125 48119 685 + . . scaffold1750 GLEAN mRNA 51553 51859 0.622741 + . ID=CGI_10021464; scaffold1750 TRF Tandem_Repeat 51553 51859 434 + . . scaffold1750 GLEAN mRNA 73644 73797 0.992486 - . ID=CGI_10021465; scaffold1750 TRF Tandem_Repeat 73644 73797 299 + . . scaffold1750 GLEAN mRNA 78890 78941 0.398816 + . ID=CGI_10021466; scaffold1750 TRF Tandem_Repeat 78890 78941 104 + . . scaffold1750 GLEAN mRNA 80030 80765 0.398816 + . ID=CGI_10021466; scaffold1750 TRF Tandem_Repeat 80030 80765 676 + . . scaffold1750 GLEAN mRNA 109196 109509 0.754188 + . ID=CGI_10021469; scaffold1750 TRF Tandem_Repeat 109196 109509 531 + . . scaffold1750 GLEAN mRNA 104239 104784 0.754188 + . ID=CGI_10021469; scaffold1750 WUBlastX LINE_RTE-BovB 104239 104784 564 - . . scaffold1750 GLEAN mRNA 136588 137173 0.754188 + . ID=CGI_10021469; scaffold1750 TRF Tandem_Repeat 136588 137173 917 + . . scaffold1750 GLEAN mRNA 136803 136904 0.754188 + . ID=CGI_10021469; scaffold1750 TRF Tandem_Repeat 136803 136904 54 + . . scaffold1750 GLEAN mRNA 139784 139828 0.754188 + . ID=CGI_10021469; scaffold1750 TRF Tandem_Repeat 139784 139828 63 + . . scaffold1750 GLEAN mRNA 151418 152042 0.999676 + . ID=CGI_10021471; scaffold1750 TRF Tandem_Repeat 151418 152042 594 + . . scaffold1750 GLEAN mRNA 151438 151544 0.999676 + . ID=CGI_10021471; scaffold1750 TRF Tandem_Repeat 151438 151544 52 + . . scaffold1750 GLEAN mRNA 170482 170520 0.680922 + . ID=CGI_10021472; scaffold1750 TRF Tandem_Repeat 170482 170520 71 + . . scaffold1750 GLEAN mRNA 170745 170781 0.680922 + . ID=CGI_10021472; scaffold1750 TRF Tandem_Repeat 170745 170781 67 + . . scaffold1750 GLEAN mRNA 174999 175295 0.680922 + . ID=CGI_10021472; scaffold1750 TRF Tandem_Repeat 174999 175295 567 + . . scaffold1750 GLEAN mRNA 182009 182945 0.680922 + . ID=CGI_10021472; scaffold1750 TRF Tandem_Repeat 182009 182945 873 + . . scaffold1750 GLEAN mRNA 184877 185080 0.680922 + . ID=CGI_10021472; scaffold1750 TRF Tandem_Repeat 184877 185080 354 + . . scaffold1750 GLEAN mRNA 186455 186711 0.680922 + . ID=CGI_10021472; scaffold1750 TRF Tandem_Repeat 186455 186711 370 + . . scaffold1750 GLEAN mRNA 189232 189316 0.680922 + . ID=CGI_10021472; scaffold1750 TRF Tandem_Repeat 189232 189316 71 + . . scaffold1750 GLEAN mRNA 219710 219754 0.99996 + . ID=CGI_10021474; scaffold1750 TRF Tandem_Repeat 219710 219754 54 + . . scaffold1750 GLEAN mRNA 228727 228799 0.823116 - . ID=CGI_10021475; scaffold1750 TRF Tandem_Repeat 228727 228799 87 + . . scaffold1750 GLEAN mRNA 231233 231285 0.823116 - . ID=CGI_10021475; scaffold1750 TRF Tandem_Repeat 231233 231285 106 + . . scaffold1750 GLEAN mRNA 231704 231898 0.823116 - . ID=CGI_10021475; scaffold1750 WUBlastX DNA_hAT 231704 231898 100 + . . scaffold1750 GLEAN mRNA 232757 232900 0.823116 - . ID=CGI_10021475; scaffold1750 WUBlastX DNA_hAT 232757 232900 26 + . . scaffold1750 GLEAN mRNA 229822 231213 0.823116 - . ID=CGI_10021475; scaffold1750 WUBlastX DNA_hAT 229822 231213 454 + . . scaffold1750 GLEAN mRNA 232273 232422 0.823116 - . ID=CGI_10021475; scaffold1750 WUBlastX DNA_hAT 232273 232422 68 + . . scaffold1750 GLEAN mRNA 231233 231285 1 + . ID=CGI_10021476; scaffold1750 TRF Tandem_Repeat 231233 231285 106 + . . scaffold1750 GLEAN mRNA 231704 231898 1 + . ID=CGI_10021476; scaffold1750 WUBlastX DNA_hAT 231704 231898 100 + . . scaffold1750 GLEAN mRNA 232757 232900 1 + . ID=CGI_10021476; scaffold1750 WUBlastX DNA_hAT 232757 232900 26 + . . scaffold1750 GLEAN mRNA 229822 231213 1 + . ID=CGI_10021476; scaffold1750 WUBlastX DNA_hAT 229822 231213 454 + . . scaffold1750 GLEAN mRNA 232273 232422 1 + . ID=CGI_10021476; scaffold1750 WUBlastX DNA_hAT 232273 232422 68 + . . scaffold1750 GLEAN mRNA 243753 244024 0.764883 - . ID=CGI_10021478; scaffold1750 TRF Tandem_Repeat 243753 244024 355 + . . scaffold1750 GLEAN mRNA 258586 258781 0.811575 + . ID=CGI_10021479; scaffold1750 TRF Tandem_Repeat 258586 258781 338 + . . scaffold1750 GLEAN mRNA 267615 267655 1 - . ID=CGI_10021480; scaffold1750 TRF Tandem_Repeat 267615 267655 82 + . . scaffold1750 GLEAN mRNA 278006 278070 1 - . ID=CGI_10021481; scaffold1750 TRF Tandem_Repeat 278006 278070 121 + . . scaffold1750 GLEAN mRNA 297343 297546 0.999353 - . ID=CGI_10021485; scaffold1750 TRF Tandem_Repeat 297343 297546 374 + . . scaffold1750 GLEAN mRNA 298197 298630 0.999353 - . ID=CGI_10021485; scaffold1750 TRF Tandem_Repeat 298197 298630 748 + . . scaffold1750 GLEAN mRNA 304038 304081 0.999353 - . ID=CGI_10021485; scaffold1750 TRF Tandem_Repeat 304038 304081 88 + . . scaffold1750 GLEAN mRNA 294772 295163 0.999353 - . ID=CGI_10021485; scaffold1750 TRF Tandem_Repeat 294772 295163 398 + . . scaffold1750 GLEAN mRNA 294772 295163 0.999353 - . ID=CGI_10021485; scaffold1750 TRF Tandem_Repeat 294772 295163 452 + . . scaffold1750 GLEAN mRNA 432875 432908 0.999675 + . ID=CGI_10021491; scaffold1750 TRF Tandem_Repeat 432875 432908 68 + . . scaffold1750 GLEAN mRNA 449465 449500 0.999675 + . ID=CGI_10021491; scaffold1750 TRF Tandem_Repeat 449465 449500 72 + . . scaffold1750 GLEAN mRNA 459664 459691 0.999675 + . ID=CGI_10021491; scaffold1750 TRF Tandem_Repeat 459664 459691 56 + . . scaffold1750 GLEAN mRNA 508348 508387 0.984774 - . ID=CGI_10021494; scaffold1750 TRF Tandem_Repeat 508348 508387 71 + . . scaffold1750 GLEAN mRNA 509049 509120 0.984774 - . ID=CGI_10021494; scaffold1750 TRF Tandem_Repeat 509049 509120 69 + . . scaffold1750 GLEAN mRNA 509051 509125 0.984774 - . ID=CGI_10021494; scaffold1750 TRF Tandem_Repeat 509051 509125 66 + . . scaffold1750 GLEAN mRNA 520941 521196 0.89824 - . ID=CGI_10021495; scaffold1750 TRF Tandem_Repeat 520941 521196 494 + . . scaffold1750 GLEAN mRNA 523546 524827 0.89824 - . ID=CGI_10021495; scaffold1750 TRF Tandem_Repeat 523546 524827 1688 + . . scaffold1750 GLEAN mRNA 544990 545051 1 - . ID=CGI_10021497; scaffold1750 TRF Tandem_Repeat 544990 545051 124 + . . scaffold1750 GLEAN mRNA 545049 545083 1 - . ID=CGI_10021497; scaffold1750 TRF Tandem_Repeat 545049 545083 70 + . . scaffold1750 GLEAN mRNA 561472 561603 0.999999 - . ID=CGI_10021498; scaffold1750 WUBlastX LTR_Pao 561472 561603 20 - . . scaffold1750 GLEAN mRNA 560254 560315 0.999999 - . ID=CGI_10021498; scaffold1750 WUBlastX LTR_Gypsy 560103 560315 20 - . . scaffold1750 GLEAN mRNA 621436 621780 0.991783 + . ID=CGI_10021499; scaffold1750 WUBlastX LTR_Pao 621436 621780 318 + . . scaffold1750 GLEAN mRNA 618407 619150 0.991783 + . ID=CGI_10021499; scaffold1750 WUBlastX LTR_Pao 618407 619150 29 + . . scaffold1750 GLEAN mRNA 621779 622255 0.991783 + . ID=CGI_10021499; scaffold1750 WUBlastX LTR_Pao 621779 622255 374 + . . scaffold1750 GLEAN mRNA 618746 621442 0.991783 + . ID=CGI_10021499; scaffold1750 WUBlastX LTR_Pao 618746 621442 965 + . . scaffold1750 GLEAN mRNA 619346 621433 0.991783 + . ID=CGI_10021499; scaffold1750 WUBlastX LTR_Pao 619346 621433 1051 + . . scaffold1750 GLEAN mRNA 621779 622342 0.991783 + . ID=CGI_10021499; scaffold1750 WUBlastX LTR_Pao 621779 622342 310 + . . scaffold1750 GLEAN mRNA 627366 628111 0.991783 + . ID=CGI_10021499; scaffold1750 TRF Tandem_Repeat 627366 628111 1199 + . . scaffold1750 GLEAN mRNA 623235 623312 0.991783 + . ID=CGI_10021499; scaffold1750 WUBlastX LTR_Pao 623235 623312 36 + . . scaffold1750 GLEAN mRNA 623305 625314 0.991783 + . ID=CGI_10021499; scaffold1750 WUBlastX LTR_Pao 623305 625314 1514 + . . scaffold1750 GLEAN mRNA 631031 631135 0.728195 - . ID=CGI_10021500; scaffold1750 TRF Tandem_Repeat 631031 631135 86 + . . scaffold1750 GLEAN mRNA 631039 631134 0.728195 - . ID=CGI_10021500; scaffold1750 TRF Tandem_Repeat 631039 631134 97 + . . scaffold1750 GLEAN mRNA 631039 631122 0.728195 - . ID=CGI_10021500; scaffold1750 TRF Tandem_Repeat 631039 631122 84 + . . scaffold1750 GLEAN mRNA 636768 637001 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 636768 637001 134 + . . scaffold1750 GLEAN mRNA 637025 637318 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 637025 637318 113 + . . scaffold1750 GLEAN mRNA 633565 633705 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 633565 633705 29 + . . scaffold1750 GLEAN mRNA 634133 634309 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 634133 634309 36 + . . scaffold1750 GLEAN mRNA 636496 636777 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 636496 636777 216 + . . scaffold1750 GLEAN mRNA 634133 634423 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 634133 634423 32 + . . scaffold1750 GLEAN mRNA 636768 637082 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 636768 637082 126 + . . scaffold1750 GLEAN mRNA 637338 637748 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 637338 637748 254 + . . scaffold1750 GLEAN mRNA 634464 635846 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 634464 635846 528 + . . scaffold1750 GLEAN mRNA 635858 636439 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 635858 636439 359 + . . scaffold1750 GLEAN mRNA 637254 637748 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 637254 637748 219 + . . scaffold1750 GLEAN mRNA 636442 636777 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 636442 636777 150 + . . scaffold1750 GLEAN mRNA 637807 638106 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 637807 638106 87 + . . scaffold1750 GLEAN mRNA 637807 638235 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 637807 638235 61 + . . scaffold1750 GLEAN mRNA 633604 633843 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 633604 633843 27 + . . scaffold1750 GLEAN mRNA 637314 637829 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LTR_Pao 637314 637829 174 + . . scaffold1750 GLEAN mRNA 641947 642063 0.728195 - . ID=CGI_10021500; scaffold1750 TRF Tandem_Repeat 641947 642063 100 + . . scaffold1750 GLEAN mRNA 681366 681491 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX DNA_Harbinger 681366 681491 43 + . . scaffold1750 GLEAN mRNA 681127 681345 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX DNA_Harbinger 681127 681345 59 + . . scaffold1750 GLEAN mRNA 681387 681512 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX DNA_Harbinger 681387 681512 61 + . . scaffold1750 GLEAN mRNA 681648 681761 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX DNA_Harbinger 681648 681761 54 + . . scaffold1750 GLEAN mRNA 680097 680465 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX DNA_Harbinger 680097 680465 160 + . . scaffold1750 GLEAN mRNA 681127 681240 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX DNA_Harbinger 681127 681240 116 + . . scaffold1750 GLEAN mRNA 682032 682157 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX DNA_Harbinger 682032 682157 83 + . . scaffold1750 GLEAN mRNA 686277 686450 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX DNA_Harbinger 686277 686450 48 - . . scaffold1750 GLEAN mRNA 679453 679779 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX LTR_Gypsy-Troyk 679096 679779 235 - . . scaffold1750 GLEAN mRNA 680067 680525 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX DNA_Harbinger 680067 680525 101 + . . scaffold1750 GLEAN mRNA 689959 690118 0.700377 - . ID=CGI_10021502; scaffold1750 TRF Tandem_Repeat 689959 690118 135 + . . scaffold1750 GLEAN mRNA 688402 689337 0.700377 - . ID=CGI_10021502; scaffold1750 WUBlastX LTR_Gypsy 688234 689337 406 - . . scaffold1750 GLEAN mRNA 688423 689343 0.700377 - . ID=CGI_10021502; scaffold1750 WUBlastX LTR_Gypsy-Troyk 688423 689343 547 - . . scaffold1750 GLEAN mRNA 688402 688629 0.700377 - . ID=CGI_10021502; scaffold1750 WUBlastX LTR_Gypsy-Troyk 688084 688629 297 - . . scaffold128 GLEAN mRNA 35968 35998 0.999548 - . ID=CGI_10021503; scaffold128 TRF Tandem_Repeat 35968 35998 53 + . . scaffold128 GLEAN mRNA 37057 37082 0.999548 - . ID=CGI_10021503; scaffold128 TRF Tandem_Repeat 37057 37082 52 + . . scaffold128 GLEAN mRNA 62917 62954 0.993133 - . ID=CGI_10021504; scaffold128 TRF Tandem_Repeat 62917 62954 76 + . . scaffold128 GLEAN mRNA 57217 58290 0.993133 - . ID=CGI_10021504; scaffold128 WUBlastX DNA_Kolobok-IS4 57217 58290 133 + . . scaffold128 GLEAN mRNA 60752 60892 0.993133 - . ID=CGI_10021504; scaffold128 WUBlastX DNA_IS4EU 60752 60892 58 - . . scaffold128 GLEAN mRNA 58710 59600 0.993133 - . ID=CGI_10021504; scaffold128 WUBlastX DNA_Kolobok-IS4 58710 59600 447 - . . scaffold128 GLEAN mRNA 60626 60973 0.993133 - . ID=CGI_10021504; scaffold128 WUBlastX DNA_IS4EU 60626 60973 57 - . . scaffold128 GLEAN mRNA 57415 58302 0.993133 - . ID=CGI_10021504; scaffold128 WUBlastX DNA_IS4EU 57415 58302 203 + . . scaffold128 GLEAN mRNA 56494 56793 0.993133 - . ID=CGI_10021504; scaffold128 WUBlastX DNA_IS4EU 56494 56793 44 + . . scaffold128 GLEAN mRNA 78273 78363 0.41081 + . ID=CGI_10021506; scaffold128 TRF Tandem_Repeat 78273 78363 80 + . . scaffold128 GLEAN mRNA 78886 79008 0.41081 + . ID=CGI_10021506; scaffold128 TRF Tandem_Repeat 78886 79008 97 + . . scaffold128 GLEAN mRNA 78886 79000 0.41081 + . ID=CGI_10021506; scaffold128 TRF Tandem_Repeat 78886 79000 123 + . . scaffold128 GLEAN mRNA 93295 93429 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX LINE_Penelope 93295 93429 44 - . . scaffold128 GLEAN mRNA 87149 87376 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX DNA_TcMar-Tc1 87149 87376 87 + . . scaffold128 GLEAN mRNA 87399 87713 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX DNA_TcMar-Tc1 87399 87713 61 + . . scaffold128 GLEAN mRNA 97373 97579 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX DNA_Crypton 97373 97579 79 - . . scaffold128 GLEAN mRNA 87026 87388 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX DNA_TcMar-Tc1 87026 87388 74 + . . scaffold128 GLEAN mRNA 87402 87593 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX DNA_TcMar-Tc1 87402 87593 113 + . . scaffold128 GLEAN mRNA 91097 92038 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX LINE_CR1-L2 91097 92038 56 + . . scaffold128 GLEAN mRNA 87402 87644 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX DNA_TcMar-Tc1 87402 87644 100 + . . scaffold128 GLEAN mRNA 93477 93617 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX LINE_Penelope 93477 93617 41 - . . scaffold128 GLEAN mRNA 93337 93471 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX LINE_Penelope 93337 93471 57 - . . scaffold128 GLEAN mRNA 93477 93545 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX LINE_Penelope 93477 93545 47 - . . scaffold128 GLEAN mRNA 94223 94699 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX LINE_Penelope 94223 94699 185 - . . scaffold128 GLEAN mRNA 96736 96900 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX LINE_Penelope 96736 96900 72 - . . scaffold128 GLEAN mRNA 91094 91849 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX LINE_L2 91094 91849 313 + . . scaffold128 GLEAN mRNA 96760 96885 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX LINE_Penelope 96760 96885 81 - . . scaffold128 GLEAN mRNA 94121 94699 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX LINE_Penelope 94121 94699 34 - . . scaffold128 GLEAN mRNA 122299 122802 0.290216 - . ID=CGI_10021509; scaffold128 WUBlastX LINE_RTE-X 122299 122802 112 + . . scaffold128 GLEAN mRNA 122186 122311 0.290216 - . ID=CGI_10021509; scaffold128 WUBlastX LINE_RTE-X 122186 122311 82 + . . scaffold128 GLEAN mRNA 122015 122290 0.290216 - . ID=CGI_10021509; scaffold128 WUBlastX LINE_RTE-X 122015 122290 43 + . . scaffold128 GLEAN mRNA 174785 175021 0.999999 + . ID=CGI_10021511; scaffold128 TRF Tandem_Repeat 174785 175021 183 + . . scaffold128 GLEAN mRNA 176511 176549 0.999999 + . ID=CGI_10021511; scaffold128 TRF Tandem_Repeat 176511 176549 51 + . . scaffold128 GLEAN mRNA 275169 275198 0.999372 + . ID=CGI_10021515; scaffold128 WUBlastX LTR_Gypsy 274884 275198 95 + . . scaffold128 GLEAN mRNA 283541 283651 0.516047 - . ID=CGI_10021516; scaffold128 WUBlastX LTR_Copia 283541 283651 21 + . . scaffold128 GLEAN mRNA 318112 318159 0.851957 + . ID=CGI_10021517; scaffold128 TRF Tandem_Repeat 318112 318159 96 + . . scaffold128 GLEAN mRNA 375948 375999 0.614041 - . ID=CGI_10021518; scaffold128 TRF Tandem_Repeat 375948 375999 86 + . . scaffold128 GLEAN mRNA 375953 376002 0.614041 - . ID=CGI_10021518; scaffold128 TRF Tandem_Repeat 375953 376002 73 + . . scaffold128 GLEAN mRNA 375961 376002 0.614041 - . ID=CGI_10021518; scaffold128 TRF Tandem_Repeat 375961 376002 57 + . . scaffold128 GLEAN mRNA 400208 400254 0.774499 + . ID=CGI_10021520; scaffold128 TRF Tandem_Repeat 400208 400254 51 + . . scaffold128 GLEAN mRNA 412143 412633 1 + . ID=CGI_10021521; scaffold128 TRF Tandem_Repeat 412143 412633 470 + . . scaffold128 GLEAN mRNA 412143 412781 1 + . ID=CGI_10021521; scaffold128 TRF Tandem_Repeat 412143 412781 481 + . . scaffold128 GLEAN mRNA 412162 412773 1 + . ID=CGI_10021521; scaffold128 TRF Tandem_Repeat 412162 412773 470 + . . scaffold128 GLEAN mRNA 412640 412770 1 + . ID=CGI_10021521; scaffold128 TRF Tandem_Repeat 412640 412770 108 + . . scaffold128 GLEAN mRNA 454831 454888 1 + . ID=CGI_10021524; scaffold128 TRF Tandem_Repeat 454831 454888 116 + . . scaffold128 GLEAN mRNA 464745 464909 1 + . ID=CGI_10021524; scaffold128 TRF Tandem_Repeat 464745 464909 134 + . . scaffold128 GLEAN mRNA 464744 464903 1 + . ID=CGI_10021524; scaffold128 TRF Tandem_Repeat 464744 464903 193 + . . scaffold128 GLEAN mRNA 464744 465215 1 + . ID=CGI_10021524; scaffold128 TRF Tandem_Repeat 464744 465215 303 + . . scaffold128 GLEAN mRNA 464971 465071 1 + . ID=CGI_10021524; scaffold128 TRF Tandem_Repeat 464971 465071 148 + . . scaffold128 GLEAN mRNA 464994 465242 1 + . ID=CGI_10021524; scaffold128 TRF Tandem_Repeat 464994 465242 293 + . . scaffold128 GLEAN mRNA 464994 465242 1 + . ID=CGI_10021524; scaffold128 TRF Tandem_Repeat 464994 465242 336 + . . scaffold128 GLEAN mRNA 553707 553758 0.978795 - . ID=CGI_10021531; scaffold128 TRF Tandem_Repeat 553707 553758 59 + . . scaffold128 GLEAN mRNA 553725 553758 0.978795 - . ID=CGI_10021531; scaffold128 TRF Tandem_Repeat 553725 553758 68 + . . scaffold128 GLEAN mRNA 651020 651685 0.836156 - . ID=CGI_10021536; scaffold128 TRF Tandem_Repeat 651020 651685 670 + . . scaffold128 GLEAN mRNA 652412 654253 0.836156 - . ID=CGI_10021536; scaffold128 WUBlastX LINE_RTE-X 652412 654253 770 + . . scaffold128 GLEAN mRNA 651959 652027 0.836156 - . ID=CGI_10021536; scaffold128 WUBlastX LINE_R1 651959 652027 21 + . . scaffold128 GLEAN mRNA 652220 653419 0.836156 - . ID=CGI_10021536; scaffold128 WUBlastX LINE_L2 652220 653419 213 + . . scaffold973 GLEAN mRNA 3244 3302 1 + . ID=CGI_10021541; scaffold973 TRF Tandem_Repeat 3244 3302 70 + . . scaffold973 GLEAN mRNA 3240 3302 1 + . ID=CGI_10021541; scaffold973 TRF Tandem_Repeat 3240 3302 85 + . . scaffold973 GLEAN mRNA 3240 3302 1 + . ID=CGI_10021541; scaffold973 TRF Tandem_Repeat 3240 3302 60 + . . scaffold973 GLEAN mRNA 3240 3302 1 + . ID=CGI_10021541; scaffold973 TRF Tandem_Repeat 3240 3302 73 + . . scaffold973 GLEAN mRNA 4105 4378 1 + . ID=CGI_10021541; scaffold973 TRF Tandem_Repeat 4105 4378 341 + . . scaffold973 GLEAN mRNA 17867 17898 1 + . ID=CGI_10021542; scaffold973 TRF Tandem_Repeat 17867 17898 55 + . . scaffold973 GLEAN mRNA 45373 45434 1 + . ID=CGI_10021543; scaffold973 TRF Tandem_Repeat 45373 45434 124 + . . scaffold973 GLEAN mRNA 46424 46473 1 + . ID=CGI_10021543; scaffold973 TRF Tandem_Repeat 46424 46473 100 + . . scaffold973 GLEAN mRNA 53825 53867 1 + . ID=CGI_10021544; scaffold973 TRF Tandem_Repeat 53825 53867 86 + . . scaffold973 GLEAN mRNA 54856 54901 1 + . ID=CGI_10021544; scaffold973 TRF Tandem_Repeat 54856 54901 92 + . . scaffold973 GLEAN mRNA 63318 63347 0.99033 + . ID=CGI_10021545; scaffold973 TRF Tandem_Repeat 63318 63347 60 + . . scaffold973 GLEAN mRNA 64669 64712 0.99033 + . ID=CGI_10021545; scaffold973 TRF Tandem_Repeat 64669 64712 88 + . . scaffold973 GLEAN mRNA 76814 76843 0.999527 + . ID=CGI_10021546; scaffold973 TRF Tandem_Repeat 76814 76843 60 + . . scaffold973 GLEAN mRNA 78165 78212 0.999527 + . ID=CGI_10021546; scaffold973 TRF Tandem_Repeat 78165 78212 96 + . . scaffold973 GLEAN mRNA 119489 119539 1 - . ID=CGI_10021548; scaffold973 TRF Tandem_Repeat 119489 119539 102 + . . scaffold973 GLEAN mRNA 124069 124118 1 - . ID=CGI_10021548; scaffold973 TRF Tandem_Repeat 124069 124118 100 + . . scaffold973 GLEAN mRNA 134904 135152 0.516856 - . ID=CGI_10021549; scaffold973 TRF Tandem_Repeat 134904 135152 257 + . . scaffold973 GLEAN mRNA 138471 138504 0.516856 - . ID=CGI_10021549; scaffold973 TRF Tandem_Repeat 138471 138504 68 + . . scaffold973 GLEAN mRNA 168660 168700 0.888925 + . ID=CGI_10021551; scaffold973 TRF Tandem_Repeat 168660 168700 82 + . . scaffold973 GLEAN mRNA 364234 364400 0.648316 - . ID=CGI_10021552; scaffold973 TRF Tandem_Repeat 364234 364400 271 + . . scaffold973 GLEAN mRNA 364270 364423 0.648316 - . ID=CGI_10021552; scaffold973 TRF Tandem_Repeat 364270 364423 159 + . . scaffold973 GLEAN mRNA 368568 368615 0.648316 - . ID=CGI_10021552; scaffold973 TRF Tandem_Repeat 368568 368615 78 + . . scaffold973 GLEAN mRNA 372350 372782 1 - . ID=CGI_10021553; scaffold973 TRF Tandem_Repeat 372350 372782 496 + . . scaffold973 GLEAN mRNA 416618 416881 0.999985 - . ID=CGI_10021554; scaffold973 TRF Tandem_Repeat 416618 416881 428 + . . scaffold973 GLEAN mRNA 460858 461240 0.606957 - . ID=CGI_10021557; scaffold973 TRF Tandem_Repeat 460858 461240 568 + . . scaffold973 GLEAN mRNA 467816 468224 0.606957 - . ID=CGI_10021557; scaffold973 TRF Tandem_Repeat 467816 468224 287 + . . scaffold973 GLEAN mRNA 467842 468274 0.606957 - . ID=CGI_10021557; scaffold973 TRF Tandem_Repeat 467842 468274 166 + . . scaffold973 GLEAN mRNA 471653 472565 0.606957 - . ID=CGI_10021557; scaffold973 TRF Tandem_Repeat 471653 472565 1419 + . . scaffold973 GLEAN mRNA 472735 472776 0.606957 - . ID=CGI_10021557; scaffold973 TRF Tandem_Repeat 472735 472776 68 + . . scaffold973 GLEAN mRNA 472739 472781 0.606957 - . ID=CGI_10021557; scaffold973 TRF Tandem_Repeat 472739 472781 54 + . . scaffold973 GLEAN mRNA 480001 480165 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 480001 480165 118 + . . scaffold973 GLEAN mRNA 482321 482617 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 482321 482617 207 + . . scaffold973 GLEAN mRNA 484446 484655 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 484446 484655 26 - . . scaffold973 GLEAN mRNA 480774 480944 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_P 480774 480944 34 + . . scaffold973 GLEAN mRNA 482976 483332 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 482976 483332 163 - . . scaffold973 GLEAN mRNA 483756 484178 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 483756 484178 114 - . . scaffold973 GLEAN mRNA 484449 484619 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 484449 484619 76 - . . scaffold973 GLEAN mRNA 484809 484901 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 484809 484901 56 - . . scaffold973 GLEAN mRNA 485240 485359 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_IS4EU 485240 485359 29 - . . scaffold973 GLEAN mRNA 481620 482351 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_Kolobok-IS4 481620 482351 426 + . . scaffold973 GLEAN mRNA 480774 480989 0.606957 - . ID=CGI_10021557; scaffold973 WUBlastX DNA_P 480774 480989 24 + . . scaffold973 GLEAN mRNA 560780 560869 0.441011 - . ID=CGI_10021562; scaffold973 TRF Tandem_Repeat 560780 560869 65 + . . scaffold973 GLEAN mRNA 562975 563061 0.441011 - . ID=CGI_10021562; scaffold973 TRF Tandem_Repeat 562975 563061 104 + . . scaffold973 GLEAN mRNA 567976 568269 0.441011 - . ID=CGI_10021562; scaffold973 TRF Tandem_Repeat 567976 568269 241 + . . scaffold973 GLEAN mRNA 568274 568883 0.441011 - . ID=CGI_10021562; scaffold973 TRF Tandem_Repeat 568274 568883 438 + . . scaffold973 GLEAN mRNA 590269 591087 0.441011 - . ID=CGI_10021562; scaffold973 TRF Tandem_Repeat 590269 591087 1088 + . . scaffold973 GLEAN mRNA 593440 593781 0.441011 - . ID=CGI_10021562; scaffold973 TRF Tandem_Repeat 593440 593781 157 + . . scaffold973 GLEAN mRNA 598649 598695 0.441011 - . ID=CGI_10021562; scaffold973 TRF Tandem_Repeat 598649 598695 85 + . . scaffold973 GLEAN mRNA 602501 602711 0.441011 - . ID=CGI_10021562; scaffold973 TRF Tandem_Repeat 602501 602711 377 + . . scaffold973 GLEAN mRNA 602945 603072 0.441011 - . ID=CGI_10021562; scaffold973 TRF Tandem_Repeat 602945 603072 84 + . . scaffold973 GLEAN mRNA 603362 603614 0.441011 - . ID=CGI_10021562; scaffold973 TRF Tandem_Repeat 603362 603614 427 + . . scaffold973 GLEAN mRNA 622522 622569 0.909698 - . ID=CGI_10021563; scaffold973 TRF Tandem_Repeat 622522 622569 51 + . . scaffold973 GLEAN mRNA 622525 622569 0.909698 - . ID=CGI_10021563; scaffold973 TRF Tandem_Repeat 622525 622569 72 + . . scaffold973 GLEAN mRNA 623269 623315 0.909698 - . ID=CGI_10021563; scaffold973 TRF Tandem_Repeat 623269 623315 94 + . . scaffold973 GLEAN mRNA 633657 633718 0.909698 - . ID=CGI_10021563; scaffold973 TRF Tandem_Repeat 633657 633718 115 + . . scaffold973 GLEAN mRNA 640222 640881 0.909698 - . ID=CGI_10021563; scaffold973 TRF Tandem_Repeat 640222 640881 938 + . . scaffold237 GLEAN mRNA 97045 97078 0.288871 - . ID=CGI_10021566; scaffold237 TRF Tandem_Repeat 97045 97078 68 + . . scaffold237 GLEAN mRNA 125878 126134 1 - . ID=CGI_10021567; scaffold237 TRF Tandem_Repeat 125878 126134 424 + . . scaffold237 GLEAN mRNA 126693 126932 1 - . ID=CGI_10021567; scaffold237 TRF Tandem_Repeat 126693 126932 167 + . . scaffold237 GLEAN mRNA 126693 126932 1 - . ID=CGI_10021567; scaffold237 TRF Tandem_Repeat 126693 126932 180 + . . scaffold237 GLEAN mRNA 156620 156753 0.999347 - . ID=CGI_10021568; scaffold237 TRF Tandem_Repeat 156620 156753 169 + . . scaffold237 GLEAN mRNA 159238 159440 0.999347 - . ID=CGI_10021568; scaffold237 TRF Tandem_Repeat 159238 159440 244 + . . scaffold237 GLEAN mRNA 164492 164754 0.999347 - . ID=CGI_10021568; scaffold237 TRF Tandem_Repeat 164492 164754 436 + . . scaffold237 GLEAN mRNA 167987 168202 0.999347 - . ID=CGI_10021568; scaffold237 TRF Tandem_Repeat 167987 168202 233 + . . scaffold237 GLEAN mRNA 170166 170363 0.999347 - . ID=CGI_10021568; scaffold237 TRF Tandem_Repeat 170166 170363 360 + . . scaffold237 GLEAN mRNA 162507 163867 0.999347 - . ID=CGI_10021568; scaffold237 TRF Tandem_Repeat 162507 163867 2454 + . . scaffold237 GLEAN mRNA 162507 163867 0.999347 - . ID=CGI_10021568; scaffold237 TRF Tandem_Repeat 162507 163867 2415 + . . scaffold237 GLEAN mRNA 183728 183842 0.377455 - . ID=CGI_10021569; scaffold237 TRF Tandem_Repeat 183728 183842 169 + . . scaffold237 GLEAN mRNA 183728 183880 0.377455 - . ID=CGI_10021569; scaffold237 TRF Tandem_Repeat 183728 183880 146 + . . scaffold237 GLEAN mRNA 183756 183899 0.377455 - . ID=CGI_10021569; scaffold237 TRF Tandem_Repeat 183756 183899 60 + . . scaffold237 GLEAN mRNA 189741 190429 0.377455 - . ID=CGI_10021569; scaffold237 TRF Tandem_Repeat 189741 190429 946 + . . scaffold237 GLEAN mRNA 190179 190323 0.377455 - . ID=CGI_10021569; scaffold237 TRF Tandem_Repeat 190179 190323 87 + . . scaffold237 GLEAN mRNA 190631 190915 0.377455 - . ID=CGI_10021569; scaffold237 TRF Tandem_Repeat 190631 190915 419 + . . scaffold237 GLEAN mRNA 190717 190862 0.377455 - . ID=CGI_10021569; scaffold237 TRF Tandem_Repeat 190717 190862 83 + . . scaffold237 GLEAN mRNA 189736 190898 0.377455 - . ID=CGI_10021569; scaffold237 TRF Tandem_Repeat 189736 190898 964 + . . scaffold237 GLEAN mRNA 206356 207401 0.988255 - . ID=CGI_10021572; scaffold237 TRF Tandem_Repeat 206356 207401 1385 + . . scaffold237 GLEAN mRNA 206356 207401 0.988255 - . ID=CGI_10021572; scaffold237 TRF Tandem_Repeat 206356 207401 1289 + . . scaffold237 GLEAN mRNA 210494 210770 0.988255 - . ID=CGI_10021572; scaffold237 TRF Tandem_Repeat 210494 210770 518 + . . scaffold237 GLEAN mRNA 210772 211366 0.988255 - . ID=CGI_10021572; scaffold237 TRF Tandem_Repeat 210772 211366 994 + . . scaffold237 GLEAN mRNA 210772 211934 0.988255 - . ID=CGI_10021572; scaffold237 TRF Tandem_Repeat 210772 211934 1710 + . . scaffold237 GLEAN mRNA 211365 211934 0.988255 - . ID=CGI_10021572; scaffold237 TRF Tandem_Repeat 211365 211934 802 + . . scaffold237 GLEAN mRNA 214141 214467 0.988255 - . ID=CGI_10021572; scaffold237 TRF Tandem_Repeat 214141 214467 494 + . . scaffold237 GLEAN mRNA 222411 223461 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 222411 223461 1029 + . . scaffold237 GLEAN mRNA 224480 225404 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 224480 225404 1129 + . . scaffold237 GLEAN mRNA 226326 227249 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 226326 227249 1695 + . . scaffold237 GLEAN mRNA 227729 227841 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 227729 227841 113 + . . scaffold237 GLEAN mRNA 229892 230649 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 229892 230649 972 + . . scaffold237 GLEAN mRNA 233470 233811 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 233470 233811 517 + . . scaffold237 GLEAN mRNA 234176 234498 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 234176 234498 341 + . . scaffold237 GLEAN mRNA 234176 234497 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 234176 234497 300 + . . scaffold237 GLEAN mRNA 237752 237855 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 237752 237855 163 + . . scaffold237 GLEAN mRNA 238549 238984 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 238549 238984 662 + . . scaffold237 GLEAN mRNA 245197 245343 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 245197 245343 159 + . . scaffold237 GLEAN mRNA 245197 245343 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 245197 245343 177 + . . scaffold237 GLEAN mRNA 245540 245646 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 245540 245646 111 + . . scaffold237 GLEAN mRNA 249930 249979 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 249930 249979 55 + . . scaffold237 GLEAN mRNA 250697 250811 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 250697 250811 94 + . . scaffold237 GLEAN mRNA 250753 250917 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 250753 250917 65 + . . scaffold237 GLEAN mRNA 250727 250947 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 250727 250947 180 + . . scaffold237 GLEAN mRNA 250753 250917 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 250753 250917 77 + . . scaffold237 GLEAN mRNA 253138 253175 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 253138 253175 76 + . . scaffold237 GLEAN mRNA 253345 253392 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 253345 253392 96 + . . scaffold237 GLEAN mRNA 254205 254317 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 254205 254317 65 + . . scaffold237 GLEAN mRNA 254205 254401 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 254205 254401 193 + . . scaffold237 GLEAN mRNA 254247 254432 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 254247 254432 182 + . . scaffold237 GLEAN mRNA 246181 246354 0.776496 + . ID=CGI_10021574; scaffold237 WUBlastX DNA_Zator 246181 246354 48 + . . scaffold237 GLEAN mRNA 246617 246670 0.776496 + . ID=CGI_10021574; scaffold237 WUBlastX DNA_Zator 246617 246670 29 + . . scaffold237 GLEAN mRNA 282000 282484 0.584757 + . ID=CGI_10021577; scaffold237 TRF Tandem_Repeat 282000 282484 818 + . . scaffold237 GLEAN mRNA 284423 285535 0.584757 + . ID=CGI_10021577; scaffold237 TRF Tandem_Repeat 284423 285535 1336 + . . scaffold237 GLEAN mRNA 284423 285961 0.584757 + . ID=CGI_10021577; scaffold237 TRF Tandem_Repeat 284423 285961 1491 + . . scaffold237 GLEAN mRNA 285172 285244 0.584757 + . ID=CGI_10021577; scaffold237 TRF Tandem_Repeat 285172 285244 71 + . . scaffold237 GLEAN mRNA 285743 285961 0.584757 + . ID=CGI_10021577; scaffold237 TRF Tandem_Repeat 285743 285961 261 + . . scaffold237 GLEAN mRNA 306400 306598 1 + . ID=CGI_10021580; scaffold237 TRF Tandem_Repeat 306400 306598 398 + . . scaffold237 GLEAN mRNA 308793 309015 1 + . ID=CGI_10021580; scaffold237 TRF Tandem_Repeat 308793 309015 437 + . . scaffold237 GLEAN mRNA 309813 309921 1 + . ID=CGI_10021580; scaffold237 TRF Tandem_Repeat 309813 309921 155 + . . scaffold237 GLEAN mRNA 320685 320744 0.999786 + . ID=CGI_10021581; scaffold237 TRF Tandem_Repeat 320685 320744 57 + . . scaffold237 GLEAN mRNA 319245 320036 0.999786 + . ID=CGI_10021581; scaffold237 WUBlastX LINE_RTE-X 319245 320036 185 - . . scaffold237 GLEAN mRNA 319359 320393 0.999786 + . ID=CGI_10021581; scaffold237 WUBlastX LINE_RTE-X 319359 320393 182 - . . scaffold237 GLEAN mRNA 320258 320656 0.999786 + . ID=CGI_10021581; scaffold237 WUBlastX LINE_RTE-X 320258 320656 102 + . . scaffold237 GLEAN mRNA 360938 360964 0.784002 + . ID=CGI_10021582; scaffold237 TRF Tandem_Repeat 360938 360964 54 + . . scaffold237 GLEAN mRNA 564158 564269 0.971216 - . ID=CGI_10021586; scaffold237 TRF Tandem_Repeat 564158 564269 82 + . . scaffold237 GLEAN mRNA 590432 590509 0.776648 + . ID=CGI_10021587; scaffold237 WUBlastX LINE_R2 590432 590509 25 + . . scaffold237 GLEAN mRNA 590227 590355 0.776648 + . ID=CGI_10021587; scaffold237 WUBlastX LINE_RTE-RTE 590227 590355 22 + . . scaffold237 GLEAN mRNA 590598 590598 0.776648 + . ID=CGI_10021587; scaffold237 WUBlastX LINE_RTE-X 590598 590990 202 + . . scaffold237 GLEAN mRNA 616919 617571 0.98889 + . ID=CGI_10021588; scaffold237 TRF Tandem_Repeat 616919 617571 968 + . . scaffold237 GLEAN mRNA 643013 643069 0.612426 + . ID=CGI_10021589; scaffold237 TRF Tandem_Repeat 643013 643069 114 + . . scaffold237 GLEAN mRNA 646142 646625 0.612426 + . ID=CGI_10021589; scaffold237 TRF Tandem_Repeat 646142 646625 346 + . . scaffold237 GLEAN mRNA 646153 646625 0.612426 + . ID=CGI_10021589; scaffold237 TRF Tandem_Repeat 646153 646625 409 + . . scaffold237 GLEAN mRNA 647180 648300 0.612426 + . ID=CGI_10021589; scaffold237 TRF Tandem_Repeat 647180 648300 2143 + . . scaffold237 GLEAN mRNA 649399 649432 0.612426 + . ID=CGI_10021589; scaffold237 TRF Tandem_Repeat 649399 649432 68 + . . scaffold237 GLEAN mRNA 650149 650183 0.612426 + . ID=CGI_10021589; scaffold237 TRF Tandem_Repeat 650149 650183 70 + . . scaffold237 GLEAN mRNA 650387 650575 0.612426 + . ID=CGI_10021589; scaffold237 TRF Tandem_Repeat 650387 650575 360 + . . scaffold237 GLEAN mRNA 652379 652492 0.612426 + . ID=CGI_10021589; scaffold237 TRF Tandem_Repeat 652379 652492 72 + . . scaffold237 GLEAN mRNA 652439 652492 0.612426 + . ID=CGI_10021589; scaffold237 TRF Tandem_Repeat 652439 652492 90 + . . scaffold237 GLEAN mRNA 666254 666657 0.991699 + . ID=CGI_10021590; scaffold237 TRF Tandem_Repeat 666254 666657 628 + . . scaffold1315 GLEAN mRNA 28230 28406 0.999612 + . ID=CGI_10021591; scaffold1315 WUBlastX LINE_L1 28230 28406 28 + . . scaffold1315 GLEAN mRNA 28179 28421 0.999612 + . ID=CGI_10021591; scaffold1315 WUBlastX LINE_L1-Tx1 28179 28421 23 + . . scaffold1315 GLEAN mRNA 30522 30689 0.999612 + . ID=CGI_10021591; scaffold1315 WUBlastX DNA_Sola 30522 30689 81 + . . scaffold1315 GLEAN mRNA 26974 27405 0.999612 + . ID=CGI_10021591; scaffold1315 WUBlastX LINE_L1-Tx1 26974 27405 49 + . . scaffold1315 GLEAN mRNA 28433 28840 0.999612 + . ID=CGI_10021591; scaffold1315 WUBlastX LINE_L1-Tx1 28433 28840 34 + . . scaffold1315 GLEAN mRNA 28275 28415 0.999612 + . ID=CGI_10021591; scaffold1315 WUBlastX LINE_L1 28275 28415 33 + . . scaffold1315 GLEAN mRNA 28430 28687 0.999612 + . ID=CGI_10021591; scaffold1315 WUBlastX LINE_L1-Tx1 28430 28687 65 + . . scaffold1315 GLEAN mRNA 34483 34528 0.972425 - . ID=CGI_10021592; scaffold1315 TRF Tandem_Repeat 34483 34528 92 + . . scaffold1315 GLEAN mRNA 111203 111670 0.999824 + . ID=CGI_10021597; scaffold1315 TRF Tandem_Repeat 111203 111670 268 + . . scaffold1315 GLEAN mRNA 197136 197400 0.985772 + . ID=CGI_10021607; scaffold1315 TRF Tandem_Repeat 197136 197400 458 + . . scaffold1315 GLEAN mRNA 197136 197400 0.998573 - . ID=CGI_10021608; scaffold1315 TRF Tandem_Repeat 197136 197400 458 + . . scaffold1315 GLEAN mRNA 352647 352707 0.999675 - . ID=CGI_10021618; scaffold1315 TRF Tandem_Repeat 352647 352707 104 + . . scaffold1315 GLEAN mRNA 448539 448586 0.998149 - . ID=CGI_10021620; scaffold1315 TRF Tandem_Repeat 448539 448586 96 + . . scaffold1315 GLEAN mRNA 471642 471694 0.408651 + . ID=CGI_10021621; scaffold1315 TRF Tandem_Repeat 471642 471694 106 + . . scaffold1315 GLEAN mRNA 525705 526049 0.9886 + . ID=CGI_10021623; scaffold1315 WUBlastX LINE_RTE-X 525705 526049 86 + . . scaffold1315 GLEAN mRNA 549408 549446 0.989641 - . ID=CGI_10021624; scaffold1315 TRF Tandem_Repeat 549408 549446 51 + . . scaffold1315 GLEAN mRNA 693238 693501 0.999948 - . ID=CGI_10021627; scaffold1315 TRF Tandem_Repeat 693238 693501 168 + . . scaffold1315 GLEAN mRNA 689035 689535 0.999948 - . ID=CGI_10021627; scaffold1315 WUBlastX LINE_Penelope 689035 689535 21 - . . scaffold1315 GLEAN mRNA 688683 689276 0.999948 - . ID=CGI_10021627; scaffold1315 WUBlastX LINE_Penelope 688683 689276 61 - . . scaffold1315 GLEAN mRNA 689371 689628 0.999948 - . ID=CGI_10021627; scaffold1315 WUBlastX LINE_Penelope 689371 689628 51 - . . scaffold1315 GLEAN mRNA 688722 689033 0.999948 - . ID=CGI_10021627; scaffold1315 WUBlastX LINE_Penelope 688722 689033 63 - . . scaffold101 GLEAN mRNA 12976 13141 0.999042 - . ID=CGI_10021631; scaffold101 TRF Tandem_Repeat 12976 13141 159 + . . scaffold101 GLEAN mRNA 33666 34166 0.999952 - . ID=CGI_10021632; scaffold101 WUBlastX DNA_Sola 33666 34166 41 - . . scaffold101 GLEAN mRNA 122605 122631 0.979854 + . ID=CGI_10021634; scaffold101 TRF Tandem_Repeat 122605 122631 54 + . . scaffold101 GLEAN mRNA 150143 151467 0.934661 + . ID=CGI_10021636; scaffold101 TRF Tandem_Repeat 150143 151467 1591 + . . scaffold101 GLEAN mRNA 157185 157229 0.716445 - . ID=CGI_10021637; scaffold101 TRF Tandem_Repeat 157185 157229 90 + . . scaffold101 GLEAN mRNA 170381 170434 0.813712 - . ID=CGI_10021638; scaffold101 TRF Tandem_Repeat 170381 170434 58 + . . scaffold101 GLEAN mRNA 175102 176801 0.813712 - . ID=CGI_10021638; scaffold101 TRF Tandem_Repeat 175102 176801 2517 + . . scaffold101 GLEAN mRNA 175102 176801 0.813712 - . ID=CGI_10021638; scaffold101 TRF Tandem_Repeat 175102 176801 2551 + . . scaffold101 GLEAN mRNA 176966 177012 0.813712 - . ID=CGI_10021638; scaffold101 TRF Tandem_Repeat 176966 177012 51 + . . scaffold101 GLEAN mRNA 177362 177400 0.813712 - . ID=CGI_10021638; scaffold101 TRF Tandem_Repeat 177362 177400 60 + . . scaffold101 GLEAN mRNA 177361 177420 0.813712 - . ID=CGI_10021638; scaffold101 TRF Tandem_Repeat 177361 177420 66 + . . scaffold101 GLEAN mRNA 177370 177420 0.813712 - . ID=CGI_10021638; scaffold101 TRF Tandem_Repeat 177370 177420 75 + . . scaffold101 GLEAN mRNA 177386 177424 0.813712 - . ID=CGI_10021638; scaffold101 TRF Tandem_Repeat 177386 177424 69 + . . scaffold101 GLEAN mRNA 261653 261692 1 + . ID=CGI_10021643; scaffold101 TRF Tandem_Repeat 261653 261692 80 + . . scaffold101 GLEAN mRNA 283773 283858 0.957882 + . ID=CGI_10021644; scaffold101 TRF Tandem_Repeat 283773 283858 109 + . . scaffold101 GLEAN mRNA 290891 290935 0.957882 + . ID=CGI_10021644; scaffold101 TRF Tandem_Repeat 290891 290935 90 + . . scaffold101 GLEAN mRNA 317105 317138 0.999351 + . ID=CGI_10021645; scaffold101 TRF Tandem_Repeat 317105 317138 59 + . . scaffold101 GLEAN mRNA 319962 319988 0.999351 + . ID=CGI_10021645; scaffold101 TRF Tandem_Repeat 319962 319988 54 + . . scaffold101 GLEAN mRNA 322332 322724 0.999351 + . ID=CGI_10021645; scaffold101 WUBlastX DNA_MuDR 322332 322724 90 + . . scaffold101 GLEAN mRNA 312712 312933 0.999351 + . ID=CGI_10021645; scaffold101 WUBlastX LINE_RTE-X 312712 312933 69 + . . scaffold101 GLEAN mRNA 321873 322181 0.999351 + . ID=CGI_10021645; scaffold101 WUBlastX DNA_MuDR 321873 322181 97 + . . scaffold101 GLEAN mRNA 328629 328638 0.999351 + . ID=CGI_10021645; scaffold101 WUBlastX LINE_RTE-X 328629 328691 25 + . . scaffold101 GLEAN mRNA 317105 317138 0.843729 - . ID=CGI_10021646; scaffold101 TRF Tandem_Repeat 317105 317138 59 + . . scaffold101 GLEAN mRNA 319962 319988 0.843729 - . ID=CGI_10021646; scaffold101 TRF Tandem_Repeat 319962 319988 54 + . . scaffold101 GLEAN mRNA 322332 322724 0.843729 - . ID=CGI_10021646; scaffold101 WUBlastX DNA_MuDR 322332 322724 90 + . . scaffold101 GLEAN mRNA 312712 312933 0.843729 - . ID=CGI_10021646; scaffold101 WUBlastX LINE_RTE-X 312712 312933 69 + . . scaffold101 GLEAN mRNA 321873 322181 0.843729 - . ID=CGI_10021646; scaffold101 WUBlastX DNA_MuDR 321873 322181 97 + . . scaffold101 GLEAN mRNA 380463 381101 0.551916 - . ID=CGI_10021649; scaffold101 WUBlastX LTR_Gypsy 380463 381101 109 - . . scaffold101 GLEAN mRNA 380508 381383 0.551916 - . ID=CGI_10021649; scaffold101 WUBlastX LTR_Gypsy 380508 381383 42 - . . scaffold101 GLEAN mRNA 679262 679315 0.888019 - . ID=CGI_10021653; scaffold101 TRF Tandem_Repeat 679262 679315 90 + . . scaffold101 GLEAN mRNA 678020 678220 0.888019 - . ID=CGI_10021653; scaffold101 WUBlastX DNA_MuDR 678020 678220 68 + . . scaffold101 GLEAN mRNA 676539 676628 0.888019 - . ID=CGI_10021653; scaffold101 WUBlastX DNA_TcMar-Tc1 676377 676628 23 - . . scaffold101 GLEAN mRNA 677102 677353 0.888019 - . ID=CGI_10021653; scaffold101 WUBlastX DNA_MuDR 677102 677353 31 + . . scaffold101 GLEAN mRNA 677388 677987 0.888019 - . ID=CGI_10021653; scaffold101 WUBlastX DNA_MuDR 677388 677987 191 + . . scaffold101 GLEAN mRNA 677993 678166 0.888019 - . ID=CGI_10021653; scaffold101 WUBlastX DNA_MuDR 677993 678166 21 + . . scaffold101 GLEAN mRNA 694897 694934 0.888019 - . ID=CGI_10021653; scaffold101 TRF Tandem_Repeat 694897 694934 76 + . . scaffold1032 GLEAN mRNA 5238 5452 1 + . ID=CGI_10021654; scaffold1032 TRF Tandem_Repeat 5238 5452 342 + . . scaffold1032 GLEAN mRNA 22807 22980 0.840259 + . ID=CGI_10021656; scaffold1032 WUBlastX DNA_Sola 22807 22980 26 + . . scaffold1032 GLEAN mRNA 23311 23418 0.840259 + . ID=CGI_10021656; scaffold1032 WUBlastX DNA_Sola 23311 23418 21 + . . scaffold1032 GLEAN mRNA 23494 23949 0.840259 + . ID=CGI_10021656; scaffold1032 WUBlastX DNA_Sola 23494 23949 103 + . . scaffold1032 GLEAN mRNA 22045 22872 0.840259 + . ID=CGI_10021656; scaffold1032 WUBlastX DNA_Sola 22045 22872 66 + . . scaffold1032 GLEAN mRNA 28152 28184 1 - . ID=CGI_10021657; scaffold1032 TRF Tandem_Repeat 28152 28184 57 + . . scaffold1032 GLEAN mRNA 28152 28184 0.937761 + . ID=CGI_10021658; scaffold1032 TRF Tandem_Repeat 28152 28184 57 + . . scaffold1032 GLEAN mRNA 34312 34345 0.937761 + . ID=CGI_10021658; scaffold1032 TRF Tandem_Repeat 34312 34345 68 + . . scaffold1032 GLEAN mRNA 39778 39820 0.937761 + . ID=CGI_10021658; scaffold1032 TRF Tandem_Repeat 39778 39820 77 + . . scaffold1032 GLEAN mRNA 46202 46322 0.937761 + . ID=CGI_10021658; scaffold1032 TRF Tandem_Repeat 46202 46322 188 + . . scaffold1032 GLEAN mRNA 46187 46332 0.937761 + . ID=CGI_10021658; scaffold1032 TRF Tandem_Repeat 46187 46332 163 + . . scaffold1032 GLEAN mRNA 49293 49323 0.937761 + . ID=CGI_10021658; scaffold1032 TRF Tandem_Repeat 49293 49323 53 + . . scaffold1032 GLEAN mRNA 49529 50787 0.937761 + . ID=CGI_10021658; scaffold1032 TRF Tandem_Repeat 49529 50787 1839 + . . scaffold1032 GLEAN mRNA 158711 158772 0.98911 - . ID=CGI_10021662; scaffold1032 TRF Tandem_Repeat 158711 158772 108 + . . scaffold1032 GLEAN mRNA 197263 197393 1 - . ID=CGI_10021666; scaffold1032 TRF Tandem_Repeat 197263 197393 239 + . . scaffold1032 GLEAN mRNA 231603 232510 0.999675 - . ID=CGI_10021671; scaffold1032 TRF Tandem_Repeat 231603 232510 1496 + . . scaffold1032 GLEAN mRNA 240931 240979 0.999675 - . ID=CGI_10021671; scaffold1032 TRF Tandem_Repeat 240931 240979 98 + . . scaffold1032 GLEAN mRNA 242407 243686 0.999675 - . ID=CGI_10021671; scaffold1032 TRF Tandem_Repeat 242407 243686 1469 + . . scaffold1032 GLEAN mRNA 243857 243888 0.999675 - . ID=CGI_10021671; scaffold1032 TRF Tandem_Repeat 243857 243888 55 + . . scaffold1032 GLEAN mRNA 298542 298592 0.999686 - . ID=CGI_10021677; scaffold1032 TRF Tandem_Repeat 298542 298592 102 + . . scaffold1032 GLEAN mRNA 302311 302368 0.999686 - . ID=CGI_10021677; scaffold1032 TRF Tandem_Repeat 302311 302368 82 + . . scaffold1032 GLEAN mRNA 302628 302697 0.999686 - . ID=CGI_10021677; scaffold1032 TRF Tandem_Repeat 302628 302697 133 + . . scaffold1032 GLEAN mRNA 325034 325358 0.796863 - . ID=CGI_10021678; scaffold1032 TRF Tandem_Repeat 325034 325358 484 + . . scaffold1032 GLEAN mRNA 326427 326475 0.796863 - . ID=CGI_10021678; scaffold1032 TRF Tandem_Repeat 326427 326475 62 + . . scaffold1032 GLEAN mRNA 326424 326476 0.796863 - . ID=CGI_10021678; scaffold1032 TRF Tandem_Repeat 326424 326476 56 + . . scaffold1032 GLEAN mRNA 334333 334385 0.796863 - . ID=CGI_10021678; scaffold1032 TRF Tandem_Repeat 334333 334385 106 + . . scaffold1032 GLEAN mRNA 351784 351820 0.589733 + . ID=CGI_10021679; scaffold1032 TRF Tandem_Repeat 351784 351820 56 + . . scaffold1032 GLEAN mRNA 382988 383125 0.589733 + . ID=CGI_10021679; scaffold1032 TRF Tandem_Repeat 382988 383125 232 + . . scaffold1032 GLEAN mRNA 383394 383669 0.589733 + . ID=CGI_10021679; scaffold1032 TRF Tandem_Repeat 383394 383669 411 + . . scaffold1032 GLEAN mRNA 409492 409887 0.589733 + . ID=CGI_10021679; scaffold1032 TRF Tandem_Repeat 409492 409887 257 + . . scaffold1032 GLEAN mRNA 409492 409887 0.589733 + . ID=CGI_10021679; scaffold1032 TRF Tandem_Repeat 409492 409887 255 + . . scaffold1032 GLEAN mRNA 421655 421717 0.910714 - . ID=CGI_10021682; scaffold1032 TRF Tandem_Repeat 421655 421717 117 + . . scaffold1032 GLEAN mRNA 511843 512678 0.990014 - . ID=CGI_10021688; scaffold1032 TRF Tandem_Repeat 511843 512678 1408 + . . scaffold1032 GLEAN mRNA 517219 517256 0.990014 - . ID=CGI_10021688; scaffold1032 TRF Tandem_Repeat 517219 517256 67 + . . scaffold1032 GLEAN mRNA 524542 524851 1 + . ID=CGI_10021690; scaffold1032 TRF Tandem_Repeat 524542 524851 512 + . . scaffold1032 GLEAN mRNA 551571 551957 0.969277 - . ID=CGI_10021693; scaffold1032 WUBlastX DNA_TcMar-Marin 551571 551957 230 - . . scaffold1032 GLEAN mRNA 552447 552824 0.969277 - . ID=CGI_10021693; scaffold1032 WUBlastX DNA_TcMar-Marin 552447 552824 136 - . . scaffold1032 GLEAN mRNA 552166 552453 0.969277 - . ID=CGI_10021693; scaffold1032 WUBlastX DNA_TcMar-Marin 552166 552453 191 - . . scaffold1032 GLEAN mRNA 552157 552513 0.969277 - . ID=CGI_10021693; scaffold1032 WUBlastX DNA_TcMar-Marin 552157 552513 168 - . . scaffold1032 GLEAN mRNA 565176 565206 0.969277 - . ID=CGI_10021693; scaffold1032 TRF Tandem_Repeat 565176 565206 62 + . . scaffold1032 GLEAN mRNA 567893 568222 0.969277 - . ID=CGI_10021693; scaffold1032 WUBlastX LINE_RTE-X 567893 568222 121 - . . scaffold1032 GLEAN mRNA 568213 568431 0.969277 - . ID=CGI_10021693; scaffold1032 WUBlastX LINE_RTE-X 568213 568431 42 - . . scaffold1032 GLEAN mRNA 565176 565206 0.932371 + . ID=CGI_10021694; scaffold1032 TRF Tandem_Repeat 565176 565206 62 + . . scaffold1032 GLEAN mRNA 567893 568222 0.932371 + . ID=CGI_10021694; scaffold1032 WUBlastX LINE_RTE-X 567893 568222 121 - . . scaffold1032 GLEAN mRNA 568213 568431 0.932371 + . ID=CGI_10021694; scaffold1032 WUBlastX LINE_RTE-X 568213 568431 42 - . . scaffold1032 GLEAN mRNA 638411 638857 0.998703 - . ID=CGI_10021698; scaffold1032 TRF Tandem_Repeat 638411 638857 515 + . . scaffold1032 GLEAN mRNA 638431 638507 0.998703 - . ID=CGI_10021698; scaffold1032 TRF Tandem_Repeat 638431 638507 72 + . . scaffold1032 GLEAN mRNA 641920 642818 0.998703 - . ID=CGI_10021698; scaffold1032 TRF Tandem_Repeat 641920 642818 711 + . . scaffold1032 GLEAN mRNA 641920 642818 0.419711 + . ID=CGI_10021699; scaffold1032 TRF Tandem_Repeat 641920 642818 711 + . . scaffold1032 GLEAN mRNA 648420 648454 0.419711 + . ID=CGI_10021699; scaffold1032 TRF Tandem_Repeat 648420 648454 70 + . . scaffold1032 GLEAN mRNA 648824 648865 0.419711 + . ID=CGI_10021699; scaffold1032 TRF Tandem_Repeat 648824 648865 84 + . . scaffold1032 GLEAN mRNA 654324 655078 0.419711 + . ID=CGI_10021699; scaffold1032 TRF Tandem_Repeat 654324 655078 933 + . . scaffold1032 GLEAN mRNA 667393 667417 0.419711 + . ID=CGI_10021699; scaffold1032 TRF Tandem_Repeat 667393 667417 50 + . . scaffold1032 GLEAN mRNA 668707 669024 0.419711 + . ID=CGI_10021699; scaffold1032 TRF Tandem_Repeat 668707 669024 283 + . . scaffold1032 GLEAN mRNA 668707 669024 0.419711 + . ID=CGI_10021699; scaffold1032 TRF Tandem_Repeat 668707 669024 349 + . . scaffold1032 GLEAN mRNA 668707 669024 0.419711 + . ID=CGI_10021699; scaffold1032 TRF Tandem_Repeat 668707 669024 363 + . . scaffold1032 GLEAN mRNA 689078 689196 0.556412 - . ID=CGI_10021702; scaffold1032 TRF Tandem_Repeat 689078 689196 89 + . . scaffold1032 GLEAN mRNA 689262 689474 0.556412 - . ID=CGI_10021702; scaffold1032 TRF Tandem_Repeat 689262 689474 150 + . . scaffold1032 GLEAN mRNA 707814 708164 0.590104 - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_RTE-X 707814 708164 157 + . . scaffold1032 GLEAN mRNA 708134 708838 0.590104 - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_RTE-X 708134 708838 84 + . . scaffold1032 GLEAN mRNA 707889 708191 0.590104 - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_RTE-X 707889 708191 232 + . . scaffold1032 GLEAN mRNA 708203 708715 0.590104 - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_RTE-X 708203 708715 285 + . . scaffold1032 GLEAN mRNA 709520 710482 0.590104 - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_RTE-X 709520 710482 241 + . . scaffold1032 GLEAN mRNA 707715 708161 0.590104 - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_L2 707715 708161 66 + . . scaffold1032 GLEAN mRNA 707458 707513 0.590104 - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_L1 707391 707513 20 + . . scaffold1032 GLEAN mRNA 708245 708958 0.590104 - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_R2-Hero 708245 708958 27 + . . scaffold599 GLEAN mRNA 32261 32392 0.696781 + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Ngaro 32261 32392 110 - . . scaffold599 GLEAN mRNA 30712 30822 0.696781 + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Pao 30712 30822 20 + . . scaffold599 GLEAN mRNA 30411 30674 0.696781 + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Pao 30411 30674 30 + . . scaffold599 GLEAN mRNA 32397 32705 0.696781 + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Ngaro 32397 32705 199 - . . scaffold599 GLEAN mRNA 31237 31500 0.696781 + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Pao 31237 31500 167 + . . scaffold599 GLEAN mRNA 29982 30164 0.696781 + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Pao 29982 30164 25 + . . scaffold599 GLEAN mRNA 32195 32395 0.696781 + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Ngaro 32195 32395 104 - . . scaffold599 GLEAN mRNA 32976 33368 0.696781 + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Ngaro 32976 33368 100 - . . scaffold599 GLEAN mRNA 32970 33563 0.696781 + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Ngaro 32970 33563 50 - . . scaffold599 GLEAN mRNA 32397 32864 0.696781 + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Ngaro 32397 32864 162 - . . scaffold599 GLEAN mRNA 199042 199085 0.82107 - . ID=CGI_10021711; scaffold599 TRF Tandem_Repeat 199042 199085 74 + . . scaffold599 GLEAN mRNA 252056 252113 0.998754 - . ID=CGI_10021712; scaffold599 TRF Tandem_Repeat 252056 252113 98 + . . scaffold599 GLEAN mRNA 252056 252113 0.999675 + . ID=CGI_10021713; scaffold599 TRF Tandem_Repeat 252056 252113 98 + . . scaffold599 GLEAN mRNA 265862 265888 0.999675 + . ID=CGI_10021713; scaffold599 TRF Tandem_Repeat 265862 265888 54 + . . scaffold599 GLEAN mRNA 266735 266762 0.999675 + . ID=CGI_10021713; scaffold599 TRF Tandem_Repeat 266735 266762 56 + . . scaffold599 GLEAN mRNA 292563 292724 0.424971 - . ID=CGI_10021714; scaffold599 WUBlastX LINE_RTE-X 292563 292724 27 + . . scaffold599 GLEAN mRNA 292662 292724 0.424971 - . ID=CGI_10021714; scaffold599 WUBlastX LINE_RTE-X 292662 292724 37 + . . scaffold599 GLEAN mRNA 293716 293817 0.424971 - . ID=CGI_10021714; scaffold599 WUBlastX LINE_RTE-X 293716 293817 61 + . . scaffold599 GLEAN mRNA 305987 306033 0.424971 - . ID=CGI_10021714; scaffold599 TRF Tandem_Repeat 305987 306033 94 + . . scaffold599 GLEAN mRNA 316787 317248 0.424971 - . ID=CGI_10021714; scaffold599 WUBlastX LINE_L1-Tx1 316787 317248 37 + . . scaffold599 GLEAN mRNA 316976 317296 0.424971 - . ID=CGI_10021714; scaffold599 WUBlastX LINE_L1-Tx1 316976 317296 77 + . . scaffold599 GLEAN mRNA 316976 317398 0.424971 - . ID=CGI_10021714; scaffold599 WUBlastX LINE_L1-Tx1 316976 317398 51 + . . scaffold599 GLEAN mRNA 333128 333154 0.424971 - . ID=CGI_10021714; scaffold599 TRF Tandem_Repeat 333128 333154 54 + . . scaffold599 GLEAN mRNA 340699 340724 0.424971 - . ID=CGI_10021714; scaffold599 WUBlastX DNA_P 340699 341022 42 - . . scaffold599 GLEAN mRNA 345975 346214 0.604259 - . ID=CGI_10021715; scaffold599 TRF Tandem_Repeat 345975 346214 257 + . . scaffold599 GLEAN mRNA 349307 349338 0.604259 - . ID=CGI_10021715; scaffold599 TRF Tandem_Repeat 349307 349338 64 + . . scaffold599 GLEAN mRNA 364631 364657 0.999949 + . ID=CGI_10021716; scaffold599 TRF Tandem_Repeat 364631 364657 54 + . . scaffold599 GLEAN mRNA 375396 375824 0.88989 - . ID=CGI_10021718; scaffold599 WUBlastX LINE_RTE-X 375396 375824 103 - . . scaffold599 GLEAN mRNA 375462 375719 0.88989 - . ID=CGI_10021718; scaffold599 WUBlastX LINE_RTE-X 375462 375719 166 - . . scaffold599 GLEAN mRNA 375339 375722 0.88989 - . ID=CGI_10021718; scaffold599 WUBlastX LINE_RTE-X 375339 375722 128 - . . scaffold599 GLEAN mRNA 384320 384349 0.999675 + . ID=CGI_10021719; scaffold599 TRF Tandem_Repeat 384320 384349 60 + . . scaffold599 GLEAN mRNA 384349 384393 0.999675 + . ID=CGI_10021719; scaffold599 TRF Tandem_Repeat 384349 384393 65 + . . scaffold599 GLEAN mRNA 386185 386233 0.999675 + . ID=CGI_10021719; scaffold599 TRF Tandem_Repeat 386185 386233 98 + . . scaffold599 GLEAN mRNA 389094 389124 0.999675 + . ID=CGI_10021719; scaffold599 TRF Tandem_Repeat 389094 389124 62 + . . scaffold599 GLEAN mRNA 389378 389421 0.999675 + . ID=CGI_10021719; scaffold599 TRF Tandem_Repeat 389378 389421 88 + . . scaffold599 GLEAN mRNA 395167 395218 0.884096 + . ID=CGI_10021720; scaffold599 TRF Tandem_Repeat 395167 395218 104 + . . scaffold599 GLEAN mRNA 397682 397724 0.884096 + . ID=CGI_10021720; scaffold599 TRF Tandem_Repeat 397682 397724 86 + . . scaffold599 GLEAN mRNA 400725 401683 0.884096 + . ID=CGI_10021720; scaffold599 TRF Tandem_Repeat 400725 401683 944 + . . scaffold599 GLEAN mRNA 400728 401683 0.884096 + . ID=CGI_10021720; scaffold599 TRF Tandem_Repeat 400728 401683 1129 + . . scaffold599 GLEAN mRNA 400882 401787 0.884096 + . ID=CGI_10021720; scaffold599 TRF Tandem_Repeat 400882 401787 723 + . . scaffold599 GLEAN mRNA 402012 403851 0.884096 + . ID=CGI_10021720; scaffold599 TRF Tandem_Repeat 402012 403851 2430 + . . scaffold599 GLEAN mRNA 406645 406741 0.884096 + . ID=CGI_10021720; scaffold599 TRF Tandem_Repeat 406645 406741 87 + . . scaffold599 GLEAN mRNA 411329 411376 0.980857 + . ID=CGI_10021721; scaffold599 TRF Tandem_Repeat 411329 411376 96 + . . scaffold599 GLEAN mRNA 439970 440015 1 + . ID=CGI_10021724; scaffold599 TRF Tandem_Repeat 439970 440015 92 + . . scaffold599 GLEAN mRNA 440013 440044 1 + . ID=CGI_10021724; scaffold599 TRF Tandem_Repeat 440013 440044 64 + . . scaffold599 GLEAN mRNA 441200 441241 1 + . ID=CGI_10021724; scaffold599 TRF Tandem_Repeat 441200 441241 75 + . . scaffold599 GLEAN mRNA 441946 441980 1 + . ID=CGI_10021724; scaffold599 TRF Tandem_Repeat 441946 441980 70 + . . scaffold599 GLEAN mRNA 449216 449725 1 + . ID=CGI_10021724; scaffold599 TRF Tandem_Repeat 449216 449725 569 + . . scaffold599 GLEAN mRNA 454162 454204 0.999985 - . ID=CGI_10021725; scaffold599 TRF Tandem_Repeat 454162 454204 86 + . . scaffold599 GLEAN mRNA 462365 462435 0.999985 - . ID=CGI_10021725; scaffold599 TRF Tandem_Repeat 462365 462435 117 + . . scaffold599 GLEAN mRNA 463751 463788 0.999985 - . ID=CGI_10021725; scaffold599 TRF Tandem_Repeat 463751 463788 60 + . . scaffold599 GLEAN mRNA 464556 464714 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 464556 464714 31 + . . scaffold599 GLEAN mRNA 463931 464197 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 463931 464197 64 + . . scaffold599 GLEAN mRNA 468832 469437 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 468832 469437 232 + . . scaffold599 GLEAN mRNA 465379 466440 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 465379 466440 394 - . . scaffold599 GLEAN mRNA 467549 468610 0.999985 - . ID=CGI_10021725; scaffold599 WUBlastX DNA_IS4EU 467549 468610 394 - . . scaffold599 GLEAN mRNA 462365 462435 0.953927 + . ID=CGI_10021726; scaffold599 TRF Tandem_Repeat 462365 462435 117 + . . scaffold599 GLEAN mRNA 463751 463788 0.953927 + . ID=CGI_10021726; scaffold599 TRF Tandem_Repeat 463751 463788 60 + . . scaffold599 GLEAN mRNA 472486 473240 0.953927 + . ID=CGI_10021726; scaffold599 TRF Tandem_Repeat 472486 473240 960 + . . scaffold599 GLEAN mRNA 474201 474325 0.953927 + . ID=CGI_10021726; scaffold599 TRF Tandem_Repeat 474201 474325 74 + . . scaffold599 GLEAN mRNA 464556 464714 0.953927 + . ID=CGI_10021726; scaffold599 WUBlastX DNA_IS4EU 464556 464714 31 + . . scaffold599 GLEAN mRNA 463931 464197 0.953927 + . ID=CGI_10021726; scaffold599 WUBlastX DNA_IS4EU 463931 464197 64 + . . scaffold599 GLEAN mRNA 468832 469437 0.953927 + . ID=CGI_10021726; scaffold599 WUBlastX DNA_IS4EU 468832 469437 232 + . . scaffold599 GLEAN mRNA 465379 466440 0.953927 + . ID=CGI_10021726; scaffold599 WUBlastX DNA_IS4EU 465379 466440 394 - . . scaffold599 GLEAN mRNA 467549 468610 0.953927 + . ID=CGI_10021726; scaffold599 WUBlastX DNA_IS4EU 467549 468610 394 - . . scaffold599 GLEAN mRNA 486782 486840 0.99915 - . ID=CGI_10021727; scaffold599 TRF Tandem_Repeat 486782 486840 118 + . . scaffold599 GLEAN mRNA 487187 487219 0.99915 - . ID=CGI_10021727; scaffold599 TRF Tandem_Repeat 487187 487219 66 + . . scaffold599 GLEAN mRNA 483697 484017 0.99915 - . ID=CGI_10021727; scaffold599 WUBlastX DNA_Kolobok 483697 484017 85 - . . scaffold599 GLEAN mRNA 479931 481550 0.99915 - . ID=CGI_10021727; scaffold599 WUBlastX RC_Helitron 479931 481550 789 - . . scaffold599 GLEAN mRNA 479820 480479 0.99915 - . ID=CGI_10021727; scaffold599 WUBlastX LINE_L2 479820 480479 33 - . . scaffold599 GLEAN mRNA 483697 484017 1 + . ID=CGI_10021728; scaffold599 WUBlastX DNA_Kolobok 483697 484017 85 - . . scaffold599 GLEAN mRNA 492925 492959 1 + . ID=CGI_10021729; scaffold599 TRF Tandem_Repeat 492925 492959 52 + . . scaffold599 GLEAN mRNA 492920 492972 1 + . ID=CGI_10021729; scaffold599 TRF Tandem_Repeat 492920 492972 61 + . . scaffold599 GLEAN mRNA 492937 492972 1 + . ID=CGI_10021729; scaffold599 TRF Tandem_Repeat 492937 492972 54 + . . scaffold599 GLEAN mRNA 493595 493655 1 + . ID=CGI_10021729; scaffold599 TRF Tandem_Repeat 493595 493655 122 + . . scaffold599 GLEAN mRNA 513479 513526 1 - . ID=CGI_10021731; scaffold599 TRF Tandem_Repeat 513479 513526 80 + . . scaffold599 GLEAN mRNA 513479 513526 0.5448 + . ID=CGI_10021732; scaffold599 TRF Tandem_Repeat 513479 513526 80 + . . scaffold599 GLEAN mRNA 515777 515864 0.5448 + . ID=CGI_10021732; scaffold599 TRF Tandem_Repeat 515777 515864 167 + . . scaffold599 GLEAN mRNA 531477 531542 0.593391 - . ID=CGI_10021733; scaffold599 TRF Tandem_Repeat 531477 531542 125 + . . scaffold343 GLEAN mRNA 274248 274295 0.987125 - . ID=CGI_10021745; scaffold343 TRF Tandem_Repeat 274248 274295 60 + . . scaffold343 GLEAN mRNA 274251 274295 0.987125 - . ID=CGI_10021745; scaffold343 TRF Tandem_Repeat 274251 274295 81 + . . scaffold343 GLEAN mRNA 283666 283913 0.987125 - . ID=CGI_10021745; scaffold343 TRF Tandem_Repeat 283666 283913 397 + . . scaffold343 GLEAN mRNA 339211 339765 0.999999 - . ID=CGI_10021750; scaffold343 WUBlastX LINE_RTE-X 339211 339765 45 - . . scaffold343 GLEAN mRNA 339295 340140 0.999999 - . ID=CGI_10021750; scaffold343 WUBlastX LINE_RTE-X 339295 340662 430 - . . scaffold343 GLEAN mRNA 477919 477957 0.753681 - . ID=CGI_10021759; scaffold343 TRF Tandem_Repeat 477919 477957 78 + . . scaffold343 GLEAN mRNA 482506 482622 0.753681 - . ID=CGI_10021759; scaffold343 TRF Tandem_Repeat 482506 482622 116 + . . scaffold343 GLEAN mRNA 482506 482651 0.753681 - . ID=CGI_10021759; scaffold343 TRF Tandem_Repeat 482506 482651 119 + . . scaffold343 GLEAN mRNA 484643 485351 0.753681 - . ID=CGI_10021759; scaffold343 TRF Tandem_Repeat 484643 485351 661 + . . scaffold343 GLEAN mRNA 484643 485348 0.753681 - . ID=CGI_10021759; scaffold343 TRF Tandem_Repeat 484643 485348 840 + . . scaffold343 GLEAN mRNA 487427 487464 0.753681 - . ID=CGI_10021759; scaffold343 TRF Tandem_Repeat 487427 487464 76 + . . scaffold343 GLEAN mRNA 508703 509714 0.841229 + . ID=CGI_10021760; scaffold343 TRF Tandem_Repeat 508703 509714 1542 + . . scaffold343 GLEAN mRNA 508703 509750 0.841229 + . ID=CGI_10021760; scaffold343 TRF Tandem_Repeat 508703 509750 1553 + . . scaffold343 GLEAN mRNA 520442 520486 1 - . ID=CGI_10021761; scaffold343 TRF Tandem_Repeat 520442 520486 90 + . . scaffold343 GLEAN mRNA 522471 522513 1 - . ID=CGI_10021761; scaffold343 TRF Tandem_Repeat 522471 522513 86 + . . scaffold343 GLEAN mRNA 543874 543950 0.526717 - . ID=CGI_10021763; scaffold343 TRF Tandem_Repeat 543874 543950 56 + . . scaffold343 GLEAN mRNA 543879 543927 0.526717 - . ID=CGI_10021763; scaffold343 TRF Tandem_Repeat 543879 543927 50 + . . scaffold343 GLEAN mRNA 608523 608551 0.949663 + . ID=CGI_10021767; scaffold343 TRF Tandem_Repeat 608523 608551 58 + . . scaffold343 GLEAN mRNA 611056 611092 0.949663 + . ID=CGI_10021767; scaffold343 TRF Tandem_Repeat 611056 611092 74 + . . scaffold343 GLEAN mRNA 615196 615486 0.949663 + . ID=CGI_10021767; scaffold343 WUBlastX RC_Helitron 615196 615486 39 - . . scaffold343 GLEAN mRNA 612639 613220 0.949663 + . ID=CGI_10021767; scaffold343 WUBlastX RC_Helitron 612639 613220 115 - . . scaffold343 GLEAN mRNA 614260 615435 0.949663 + . ID=CGI_10021767; scaffold343 WUBlastX DNA_Helitron 614260 615435 442 - . . scaffold343 GLEAN mRNA 612651 613325 0.949663 + . ID=CGI_10021767; scaffold343 WUBlastX LINE_L2 612651 613325 63 - . . scaffold343 GLEAN mRNA 619366 621462 0.461317 - . ID=CGI_10021768; scaffold343 WUBlastX DNA_Zator 619366 621462 1225 + . . scaffold343 GLEAN mRNA 632195 632328 0.461317 - . ID=CGI_10021768; scaffold343 TRF Tandem_Repeat 632195 632328 130 + . . scaffold343 GLEAN mRNA 632850 633427 0.461317 - . ID=CGI_10021768; scaffold343 TRF Tandem_Repeat 632850 633427 753 + . . scaffold343 GLEAN mRNA 632850 633427 0.461317 - . ID=CGI_10021768; scaffold343 TRF Tandem_Repeat 632850 633427 845 + . . scaffold343 GLEAN mRNA 624044 624325 0.461317 - . ID=CGI_10021768; scaffold343 WUBlastX DNA_Kolobok 624044 624325 111 - . . scaffold343 GLEAN mRNA 624008 624271 0.461317 - . ID=CGI_10021768; scaffold343 WUBlastX DNA_Kolobok 624008 624271 141 - . . scaffold343 GLEAN mRNA 619366 621462 0.427987 + . ID=CGI_10021769; scaffold343 WUBlastX DNA_Zator 619366 621462 1225 + . . scaffold343 GLEAN mRNA 624044 624325 0.427987 + . ID=CGI_10021769; scaffold343 WUBlastX DNA_Kolobok 624044 624325 111 - . . scaffold343 GLEAN mRNA 624008 624271 0.427987 + . ID=CGI_10021769; scaffold343 WUBlastX DNA_Kolobok 624008 624271 141 - . . scaffold343 GLEAN mRNA 638304 638336 0.437505 + . ID=CGI_10021770; scaffold343 TRF Tandem_Repeat 638304 638336 66 + . . scaffold343 GLEAN mRNA 645566 645895 1 - . ID=CGI_10021771; scaffold343 TRF Tandem_Repeat 645566 645895 254 + . . scaffold343 GLEAN mRNA 648143 648177 1 - . ID=CGI_10021771; scaffold343 TRF Tandem_Repeat 648143 648177 70 + . . scaffold343 GLEAN mRNA 646743 646778 1 - . ID=CGI_10021771; scaffold343 WUBlastX LINE_RTE-BovB 646743 646778 22 - . . scaffold343 GLEAN mRNA 643828 643960 1 - . ID=CGI_10021771; scaffold343 WUBlastX DNA_Maverick 643748 643960 79 - . . scaffold343 GLEAN mRNA 646379 646465 1 - . ID=CGI_10021771; scaffold343 WUBlastX LINE_RTE-X 646379 646465 23 - . . scaffold343 GLEAN mRNA 647014 647877 1 - . ID=CGI_10021771; scaffold343 WUBlastX LINE_RTE-BovB 647014 647877 354 - . . scaffold343 GLEAN mRNA 647891 648127 1 - . ID=CGI_10021771; scaffold343 WUBlastX LINE_RTE-BovB 647891 648127 99 - . . scaffold343 GLEAN mRNA 648177 648224 1 - . ID=CGI_10021771; scaffold343 WUBlastX LINE_L2 648177 648224 21 - . . scaffold343 GLEAN mRNA 647870 647947 1 - . ID=CGI_10021771; scaffold343 WUBlastX LINE_L1 647870 647947 39 - . . scaffold343 GLEAN mRNA 643828 643999 1 - . ID=CGI_10021771; scaffold343 WUBlastX DNA_Maverick 643748 643999 45 - . . scaffold343 GLEAN mRNA 662016 662336 1 - . ID=CGI_10021771; scaffold343 WUBlastX DNA_hAT-Blackja 662016 662336 107 + . . scaffold343 GLEAN mRNA 643952 643960 0.514976 + . ID=CGI_10021772; scaffold343 WUBlastX DNA_Maverick 643748 643960 79 - . . scaffold343 GLEAN mRNA 643952 643999 0.514976 + . ID=CGI_10021772; scaffold343 WUBlastX DNA_Maverick 643748 643999 45 - . . scaffold347 GLEAN mRNA 3782 4250 0.544841 + . ID=CGI_10021774; scaffold347 TRF Tandem_Repeat 3782 4250 834 + . . scaffold347 GLEAN mRNA 5725 5814 0.544841 + . ID=CGI_10021774; scaffold347 TRF Tandem_Repeat 5725 5814 90 + . . scaffold347 GLEAN mRNA 13537 13564 0.991473 + . ID=CGI_10021775; scaffold347 TRF Tandem_Repeat 13537 13564 56 + . . scaffold347 GLEAN mRNA 14507 14537 0.991473 + . ID=CGI_10021775; scaffold347 TRF Tandem_Repeat 14507 14537 62 + . . scaffold347 GLEAN mRNA 16477 16529 0.991473 + . ID=CGI_10021775; scaffold347 TRF Tandem_Repeat 16477 16529 90 + . . scaffold347 GLEAN mRNA 20478 20479 0.991473 + . ID=CGI_10021775; scaffold347 TRF Tandem_Repeat 20478 20572 127 + . . scaffold347 GLEAN mRNA 127569 127868 0.556255 - . ID=CGI_10021779; scaffold347 WUBlastX LINE_CR1 127569 127868 123 + . . scaffold347 GLEAN mRNA 129671 130129 0.556255 - . ID=CGI_10021779; scaffold347 WUBlastX LINE_CR1 129671 130129 308 + . . scaffold347 GLEAN mRNA 129498 129683 0.556255 - . ID=CGI_10021779; scaffold347 WUBlastX LINE_CR1 129498 129683 98 + . . scaffold347 GLEAN mRNA 129671 130255 0.556255 - . ID=CGI_10021779; scaffold347 WUBlastX LINE_CR1 129671 130255 257 + . . scaffold347 GLEAN mRNA 129211 129528 0.556255 - . ID=CGI_10021779; scaffold347 WUBlastX LINE_CR1 129211 129528 105 + . . scaffold347 GLEAN mRNA 127494 127868 0.556255 - . ID=CGI_10021779; scaffold347 WUBlastX LINE_CR1 127494 127868 24 + . . scaffold347 GLEAN mRNA 130246 130407 0.556255 - . ID=CGI_10021779; scaffold347 WUBlastX LINE_CR1 130246 130407 105 + . . scaffold347 GLEAN mRNA 129100 129528 0.556255 - . ID=CGI_10021779; scaffold347 WUBlastX LINE_CR1 129100 129528 82 + . . scaffold347 GLEAN mRNA 127873 128097 0.556255 - . ID=CGI_10021779; scaffold347 WUBlastX LINE_CR1 127873 128097 166 + . . scaffold347 GLEAN mRNA 132858 132896 0.556255 - . ID=CGI_10021779; scaffold347 TRF Tandem_Repeat 132858 132896 78 + . . scaffold347 GLEAN mRNA 151337 151634 0.984549 - . ID=CGI_10021780; scaffold347 TRF Tandem_Repeat 151337 151634 249 + . . scaffold347 GLEAN mRNA 151270 151661 0.984549 - . ID=CGI_10021780; scaffold347 TRF Tandem_Repeat 151270 151661 445 + . . scaffold347 GLEAN mRNA 151389 151661 0.984549 - . ID=CGI_10021780; scaffold347 TRF Tandem_Repeat 151389 151661 458 + . . scaffold347 GLEAN mRNA 164878 165198 0.998902 - . ID=CGI_10021782; scaffold347 TRF Tandem_Repeat 164878 165198 498 + . . scaffold347 GLEAN mRNA 203753 204078 0.540242 + . ID=CGI_10021784; scaffold347 TRF Tandem_Repeat 203753 204078 428 + . . scaffold347 GLEAN mRNA 204303 204535 0.540242 + . ID=CGI_10021784; scaffold347 TRF Tandem_Repeat 204303 204535 385 + . . scaffold347 GLEAN mRNA 219386 219494 0.993145 - . ID=CGI_10021786; scaffold347 TRF Tandem_Repeat 219386 219494 89 + . . scaffold347 GLEAN mRNA 233113 233846 0.350161 - . ID=CGI_10021787; scaffold347 TRF Tandem_Repeat 233113 233846 1117 + . . scaffold347 GLEAN mRNA 235028 235221 0.350161 - . ID=CGI_10021787; scaffold347 TRF Tandem_Repeat 235028 235221 248 + . . scaffold347 GLEAN mRNA 235028 235223 0.350161 - . ID=CGI_10021787; scaffold347 TRF Tandem_Repeat 235028 235223 286 + . . scaffold347 GLEAN mRNA 235347 235574 0.350161 - . ID=CGI_10021787; scaffold347 TRF Tandem_Repeat 235347 235574 375 + . . scaffold347 GLEAN mRNA 239236 239651 0.350161 - . ID=CGI_10021787; scaffold347 TRF Tandem_Repeat 239236 239651 760 + . . scaffold347 GLEAN mRNA 244774 245221 0.350161 - . ID=CGI_10021787; scaffold347 TRF Tandem_Repeat 244774 245221 797 + . . scaffold347 GLEAN mRNA 252448 253394 0.350161 - . ID=CGI_10021787; scaffold347 TRF Tandem_Repeat 252448 253394 1262 + . . scaffold347 GLEAN mRNA 252620 253394 0.350161 - . ID=CGI_10021787; scaffold347 TRF Tandem_Repeat 252620 253394 935 + . . scaffold347 GLEAN mRNA 261341 261961 0.350161 - . ID=CGI_10021787; scaffold347 WUBlastX LINE_CR1 261341 261961 40 - . . scaffold347 GLEAN mRNA 261027 261164 0.350161 - . ID=CGI_10021787; scaffold347 WUBlastX LINE_RTE-X 261027 261164 31 - . . scaffold347 GLEAN mRNA 261167 261802 0.350161 - . ID=CGI_10021787; scaffold347 WUBlastX LINE_L1-Tx1 261167 261802 47 - . . scaffold347 GLEAN mRNA 261269 261778 0.350161 - . ID=CGI_10021787; scaffold347 WUBlastX LINE_RTE-X 261269 261778 246 - . . scaffold347 GLEAN mRNA 261533 261850 0.350161 - . ID=CGI_10021787; scaffold347 WUBlastX LINE_I 261533 261850 56 - . . scaffold347 GLEAN mRNA 280449 280486 0.805987 + . ID=CGI_10021789; scaffold347 TRF Tandem_Repeat 280449 280486 76 + . . scaffold347 GLEAN mRNA 287088 287452 0.805987 + . ID=CGI_10021789; scaffold347 TRF Tandem_Repeat 287088 287452 209 + . . scaffold347 GLEAN mRNA 287091 287452 0.805987 + . ID=CGI_10021789; scaffold347 TRF Tandem_Repeat 287091 287452 593 + . . scaffold347 GLEAN mRNA 301273 301343 0.690079 - . ID=CGI_10021792; scaffold347 TRF Tandem_Repeat 301273 301343 142 + . . scaffold347 GLEAN mRNA 302446 302890 0.690079 - . ID=CGI_10021792; scaffold347 TRF Tandem_Repeat 302446 302890 718 + . . scaffold347 GLEAN mRNA 302446 302506 0.690079 - . ID=CGI_10021792; scaffold347 TRF Tandem_Repeat 302446 302506 53 + . . scaffold347 GLEAN mRNA 304278 304444 0.690079 - . ID=CGI_10021792; scaffold347 TRF Tandem_Repeat 304278 304444 298 + . . scaffold347 GLEAN mRNA 305078 305463 0.690079 - . ID=CGI_10021792; scaffold347 TRF Tandem_Repeat 305078 305463 169 + . . scaffold347 GLEAN mRNA 321157 321213 0.761186 + . ID=CGI_10021794; scaffold347 TRF Tandem_Repeat 321157 321213 114 + . . scaffold347 GLEAN mRNA 360629 361471 0.813896 - . ID=CGI_10021795; scaffold347 TRF Tandem_Repeat 360629 361471 1040 + . . scaffold347 GLEAN mRNA 366954 368077 0.813896 - . ID=CGI_10021795; scaffold347 TRF Tandem_Repeat 366954 368077 1644 + . . scaffold347 GLEAN mRNA 481724 481758 0.998498 + . ID=CGI_10021798; scaffold347 TRF Tandem_Repeat 481724 481758 70 + . . scaffold347 GLEAN mRNA 482700 482999 0.998498 + . ID=CGI_10021798; scaffold347 TRF Tandem_Repeat 482700 482999 313 + . . scaffold347 GLEAN mRNA 485085 485626 0.998498 + . ID=CGI_10021798; scaffold347 TRF Tandem_Repeat 485085 485626 671 + . . scaffold347 GLEAN mRNA 485085 485626 0.998498 + . ID=CGI_10021798; scaffold347 TRF Tandem_Repeat 485085 485626 585 + . . scaffold347 GLEAN mRNA 486289 487067 0.998498 + . ID=CGI_10021798; scaffold347 TRF Tandem_Repeat 486289 487067 560 + . . scaffold347 GLEAN mRNA 487237 487275 0.998498 + . ID=CGI_10021798; scaffold347 TRF Tandem_Repeat 487237 487275 69 + . . scaffold347 GLEAN mRNA 491053 491387 0.998498 + . ID=CGI_10021798; scaffold347 TRF Tandem_Repeat 491053 491387 267 + . . scaffold347 GLEAN mRNA 491062 491429 0.998498 + . ID=CGI_10021798; scaffold347 TRF Tandem_Repeat 491062 491429 393 + . . scaffold347 GLEAN mRNA 491075 491429 0.998498 + . ID=CGI_10021798; scaffold347 TRF Tandem_Repeat 491075 491429 335 + . . scaffold347 GLEAN mRNA 491068 491429 0.998498 + . ID=CGI_10021798; scaffold347 TRF Tandem_Repeat 491068 491429 225 + . . scaffold347 GLEAN mRNA 526502 526535 0.997852 + . ID=CGI_10021800; scaffold347 TRF Tandem_Repeat 526502 526535 59 + . . scaffold347 GLEAN mRNA 596347 598155 0.749141 + . ID=CGI_10021803; scaffold347 WUBlastX LTR_Pao 596347 598155 500 - . . scaffold347 GLEAN mRNA 596347 597837 0.749141 + . ID=CGI_10021803; scaffold347 WUBlastX LTR_Pao 596347 597837 545 - . . scaffold347 GLEAN mRNA 643681 643749 0.709903 + . ID=CGI_10021804; scaffold347 TRF Tandem_Repeat 643681 643749 138 + . . scaffold347 GLEAN mRNA 645244 645362 0.709903 + . ID=CGI_10021804; scaffold347 TRF Tandem_Repeat 645244 645362 193 + . . scaffold347 GLEAN mRNA 654810 655823 0.997772 - . ID=CGI_10021805; scaffold347 WUBlastX DNA_TcMar-Tc1 654810 655823 386 - . . scaffold347 GLEAN mRNA 705980 706005 0.201351 + . ID=CGI_10021806; scaffold347 TRF Tandem_Repeat 705980 706005 52 + . . scaffold1094 GLEAN mRNA 46058 46114 0.999676 + . ID=CGI_10021808; scaffold1094 TRF Tandem_Repeat 46058 46114 114 + . . scaffold1094 GLEAN mRNA 49071 49259 0.999676 + . ID=CGI_10021808; scaffold1094 WUBlastX LTR_Ngaro 49071 49259 118 - . . scaffold1094 GLEAN mRNA 62614 62735 0.918332 + . ID=CGI_10021809; scaffold1094 TRF Tandem_Repeat 62614 62735 74 + . . scaffold1094 GLEAN mRNA 62636 62734 0.918332 + . ID=CGI_10021809; scaffold1094 TRF Tandem_Repeat 62636 62734 61 + . . scaffold1094 GLEAN mRNA 155244 155280 0.497592 + . ID=CGI_10021813; scaffold1094 TRF Tandem_Repeat 155244 155280 58 + . . scaffold1094 GLEAN mRNA 164949 164992 0.650859 - . ID=CGI_10021814; scaffold1094 TRF Tandem_Repeat 164949 164992 88 + . . scaffold1094 GLEAN mRNA 166299 166325 0.650859 - . ID=CGI_10021814; scaffold1094 TRF Tandem_Repeat 166299 166325 54 + . . scaffold1094 GLEAN mRNA 219302 219377 0.989752 + . ID=CGI_10021816; scaffold1094 TRF Tandem_Repeat 219302 219377 79 + . . scaffold1094 GLEAN mRNA 221314 221664 0.989752 + . ID=CGI_10021816; scaffold1094 TRF Tandem_Repeat 221314 221664 639 + . . scaffold1094 GLEAN mRNA 234091 234121 0.989752 + . ID=CGI_10021816; scaffold1094 TRF Tandem_Repeat 234091 234121 53 + . . scaffold1094 GLEAN mRNA 230900 231433 0.989752 + . ID=CGI_10021816; scaffold1094 WUBlastX LINE_RTE-X 230900 231433 138 + . . scaffold1094 GLEAN mRNA 230810 231313 0.989752 + . ID=CGI_10021816; scaffold1094 WUBlastX LINE_RTE-X 230810 231313 83 + . . scaffold1094 GLEAN mRNA 276431 276566 0.739331 - . ID=CGI_10021820; scaffold1094 TRF Tandem_Repeat 276431 276566 112 + . . scaffold1094 GLEAN mRNA 436859 436886 0.999586 - . ID=CGI_10021828; scaffold1094 TRF Tandem_Repeat 436859 436886 56 + . . scaffold1094 GLEAN mRNA 446918 447032 0.933825 + . ID=CGI_10021829; scaffold1094 TRF Tandem_Repeat 446918 447032 74 + . . scaffold1094 GLEAN mRNA 509683 509742 0.99982 - . ID=CGI_10021833; scaffold1094 TRF Tandem_Repeat 509683 509742 57 + . . scaffold1094 GLEAN mRNA 509683 509742 0.999351 + . ID=CGI_10021834; scaffold1094 TRF Tandem_Repeat 509683 509742 57 + . . scaffold1094 GLEAN mRNA 522955 524539 0.995846 - . ID=CGI_10021835; scaffold1094 TRF Tandem_Repeat 522955 524539 1749 + . . scaffold1094 GLEAN mRNA 522919 524539 0.995846 - . ID=CGI_10021835; scaffold1094 TRF Tandem_Repeat 522919 524539 1690 + . . scaffold1094 GLEAN mRNA 609707 609757 0.531771 - . ID=CGI_10021838; scaffold1094 TRF Tandem_Repeat 609707 609757 68 + . . scaffold1094 GLEAN mRNA 614488 615276 0.531771 - . ID=CGI_10021838; scaffold1094 TRF Tandem_Repeat 614488 615276 976 + . . scaffold1094 GLEAN mRNA 616875 617555 0.531771 - . ID=CGI_10021838; scaffold1094 TRF Tandem_Repeat 616875 617555 887 + . . scaffold1094 GLEAN mRNA 619884 620004 0.531771 - . ID=CGI_10021838; scaffold1094 TRF Tandem_Repeat 619884 620004 64 + . . scaffold1094 GLEAN mRNA 619913 619989 0.531771 - . ID=CGI_10021838; scaffold1094 TRF Tandem_Repeat 619913 619989 52 + . . scaffold1094 GLEAN mRNA 627319 627368 0.531771 - . ID=CGI_10021838; scaffold1094 TRF Tandem_Repeat 627319 627368 100 + . . scaffold1094 GLEAN mRNA 627874 627917 0.531771 - . ID=CGI_10021838; scaffold1094 TRF Tandem_Repeat 627874 627917 63 + . . scaffold1094 GLEAN mRNA 627948 628747 0.531771 - . ID=CGI_10021838; scaffold1094 TRF Tandem_Repeat 627948 628747 1013 + . . scaffold1094 GLEAN mRNA 627948 628744 0.531771 - . ID=CGI_10021838; scaffold1094 TRF Tandem_Repeat 627948 628744 998 + . . scaffold1094 GLEAN mRNA 630562 631674 0.531771 - . ID=CGI_10021838; scaffold1094 WUBlastX LINE_L1-Tx1 630562 631674 87 + . . scaffold1094 GLEAN mRNA 624720 625223 0.531771 - . ID=CGI_10021838; scaffold1094 WUBlastX LINE_L1-Tx1 624720 625223 140 + . . scaffold1094 GLEAN mRNA 625243 625359 0.531771 - . ID=CGI_10021838; scaffold1094 WUBlastX LINE_L1-Tx1 625243 625359 64 + . . scaffold1094 GLEAN mRNA 631673 631807 0.531771 - . ID=CGI_10021838; scaffold1094 WUBlastX LINE_L1 631673 631807 39 + . . scaffold1094 GLEAN mRNA 629640 629921 0.531771 - . ID=CGI_10021838; scaffold1094 WUBlastX LINE_L1 629640 629921 40 + . . scaffold1094 GLEAN mRNA 631673 631864 0.531771 - . ID=CGI_10021838; scaffold1094 WUBlastX LINE_L1-Tx1 631673 631864 34 + . . scaffold1094 GLEAN mRNA 638093 638497 0.531771 - . ID=CGI_10021838; scaffold1094 WUBlastX DNA_Kolobok-IS4 638093 638497 72 - . . scaffold1094 GLEAN mRNA 629778 631334 0.531771 - . ID=CGI_10021838; scaffold1094 WUBlastX LINE_L1-Tx1 629778 631334 444 + . . scaffold1094 GLEAN mRNA 639356 639799 0.531771 - . ID=CGI_10021838; scaffold1094 WUBlastX DNA_IS4EU 639356 639799 103 - . . scaffold1094 GLEAN mRNA 639356 639910 0.531771 - . ID=CGI_10021838; scaffold1094 WUBlastX DNA_IS4EU 639356 639910 65 - . . scaffold1094 GLEAN mRNA 638954 639718 0.531771 - . ID=CGI_10021838; scaffold1094 WUBlastX DNA_Kolobok-IS4 638954 639718 68 - . . scaffold1094 GLEAN mRNA 661839 662120 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 661839 662120 124 - . . scaffold1094 GLEAN mRNA 661416 661610 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 661416 661610 171 - . . scaffold1094 GLEAN mRNA 660058 660246 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 660058 660246 229 - . . scaffold1094 GLEAN mRNA 660407 660637 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 660407 660637 257 - . . scaffold1094 GLEAN mRNA 661027 661164 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 661027 661164 151 - . . scaffold1094 GLEAN mRNA 661878 662102 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 661878 662102 273 - . . scaffold1094 GLEAN mRNA 662405 662617 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 662405 662617 299 - . . scaffold1094 GLEAN mRNA 662848 663012 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 662848 663012 170 - . . scaffold1094 GLEAN mRNA 663211 663729 0.999236 + . ID=CGI_10021839; scaffold1094 WUBlastX DNA_hAT 663211 663729 703 - . . scaffold1094 GLEAN mRNA 661839 662120 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 661839 662120 124 - . . scaffold1094 GLEAN mRNA 661416 661610 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 661416 661610 171 - . . scaffold1094 GLEAN mRNA 660058 660246 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 660058 660246 229 - . . scaffold1094 GLEAN mRNA 660407 660637 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 660407 660637 257 - . . scaffold1094 GLEAN mRNA 661027 661164 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 661027 661164 151 - . . scaffold1094 GLEAN mRNA 661878 662102 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 661878 662102 273 - . . scaffold1094 GLEAN mRNA 662405 662617 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 662405 662617 299 - . . scaffold1094 GLEAN mRNA 662848 663012 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 662848 663012 170 - . . scaffold1094 GLEAN mRNA 663211 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 663211 663729 703 - . . scaffold1094 GLEAN mRNA 676418 676939 0.999636 - . ID=CGI_10021842; scaffold1094 TRF Tandem_Repeat 676418 676939 857 + . . scaffold1094 GLEAN mRNA 691404 691439 1 + . ID=CGI_10021843; scaffold1094 TRF Tandem_Repeat 691404 691439 72 + . . scaffold1094 GLEAN mRNA 692251 692295 1 + . ID=CGI_10021843; scaffold1094 TRF Tandem_Repeat 692251 692295 90 + . . scaffold164 GLEAN mRNA 48412 48516 0.99473 - . ID=CGI_10021845; scaffold164 TRF Tandem_Repeat 48412 48516 94 + . . scaffold164 GLEAN mRNA 49593 49698 0.99473 - . ID=CGI_10021845; scaffold164 TRF Tandem_Repeat 49593 49698 107 + . . scaffold164 GLEAN mRNA 52028 52934 0.99473 - . ID=CGI_10021845; scaffold164 TRF Tandem_Repeat 52028 52934 1464 + . . scaffold164 GLEAN mRNA 53447 53656 0.99473 - . ID=CGI_10021845; scaffold164 WUBlastX LTR_Gypsy 53447 53656 93 - . . scaffold164 GLEAN mRNA 53501 53704 0.99473 - . ID=CGI_10021845; scaffold164 WUBlastX LTR_Gypsy 53501 53704 113 - . . scaffold164 GLEAN mRNA 53360 53893 0.99473 - . ID=CGI_10021845; scaffold164 WUBlastX LTR_Gypsy 53360 53893 67 - . . scaffold164 GLEAN mRNA 54523 54720 0.99473 - . ID=CGI_10021845; scaffold164 WUBlastX LTR_Gypsy 54523 54720 50 - . . scaffold164 GLEAN mRNA 54286 54720 0.99473 - . ID=CGI_10021845; scaffold164 WUBlastX LTR_Gypsy 54286 54720 49 - . . scaffold164 GLEAN mRNA 53065 53130 0.99473 - . ID=CGI_10021845; scaffold164 WUBlastX LTR_Gypsy 53065 53130 20 - . . scaffold164 GLEAN mRNA 53501 53899 0.99473 - . ID=CGI_10021845; scaffold164 WUBlastX LTR_Gypsy 53501 53899 108 - . . scaffold164 GLEAN mRNA 53776 53970 0.99473 - . ID=CGI_10021845; scaffold164 WUBlastX LTR_Gypsy 53776 53970 88 - . . scaffold164 GLEAN mRNA 53776 54414 0.99473 - . ID=CGI_10021845; scaffold164 WUBlastX LTR_Gypsy 53776 54414 36 - . . scaffold164 GLEAN mRNA 72886 73006 0.557548 - . ID=CGI_10021847; scaffold164 TRF Tandem_Repeat 72886 73006 57 + . . scaffold164 GLEAN mRNA 74009 74772 0.557548 - . ID=CGI_10021847; scaffold164 TRF Tandem_Repeat 74009 74772 849 + . . scaffold164 GLEAN mRNA 74883 74926 0.557548 - . ID=CGI_10021847; scaffold164 TRF Tandem_Repeat 74883 74926 70 + . . scaffold164 GLEAN mRNA 139367 139414 1 + . ID=CGI_10021848; scaffold164 TRF Tandem_Repeat 139367 139414 96 + . . scaffold164 GLEAN mRNA 150171 150338 1 + . ID=CGI_10021850; scaffold164 TRF Tandem_Repeat 150171 150338 201 + . . scaffold164 GLEAN mRNA 168315 168343 1 - . ID=CGI_10021852; scaffold164 TRF Tandem_Repeat 168315 168343 58 + . . scaffold164 GLEAN mRNA 167302 167973 1 - . ID=CGI_10021852; scaffold164 WUBlastX LINE_RTE-X 167302 167973 149 + . . scaffold164 GLEAN mRNA 167392 167961 1 - . ID=CGI_10021852; scaffold164 WUBlastX LINE_RTE-X 167392 167961 168 + . . scaffold164 GLEAN mRNA 177226 177391 0.999624 + . ID=CGI_10021853; scaffold164 TRF Tandem_Repeat 177226 177391 163 + . . scaffold164 GLEAN mRNA 177462 177875 0.999624 + . ID=CGI_10021853; scaffold164 TRF Tandem_Repeat 177462 177875 250 + . . scaffold164 GLEAN mRNA 177681 177885 0.999624 + . ID=CGI_10021853; scaffold164 TRF Tandem_Repeat 177681 177885 238 + . . scaffold164 GLEAN mRNA 179731 179931 0.999624 + . ID=CGI_10021853; scaffold164 TRF Tandem_Repeat 179731 179931 384 + . . scaffold164 GLEAN mRNA 222333 222668 0.998742 + . ID=CGI_10021856; scaffold164 TRF Tandem_Repeat 222333 222668 381 + . . scaffold164 GLEAN mRNA 236361 236450 1 + . ID=CGI_10021858; scaffold164 TRF Tandem_Repeat 236361 236450 173 + . . scaffold164 GLEAN mRNA 255115 255170 1 - . ID=CGI_10021861; scaffold164 TRF Tandem_Repeat 255115 255170 112 + . . scaffold164 GLEAN mRNA 257088 257332 1 - . ID=CGI_10021861; scaffold164 TRF Tandem_Repeat 257088 257332 157 + . . scaffold164 GLEAN mRNA 257087 257332 1 - . ID=CGI_10021861; scaffold164 TRF Tandem_Repeat 257087 257332 402 + . . scaffold164 GLEAN mRNA 258313 258402 1 - . ID=CGI_10021861; scaffold164 TRF Tandem_Repeat 258313 258402 63 + . . scaffold164 GLEAN mRNA 258312 258421 1 - . ID=CGI_10021861; scaffold164 TRF Tandem_Repeat 258312 258421 202 + . . scaffold164 GLEAN mRNA 298897 300179 1 - . ID=CGI_10021863; scaffold164 TRF Tandem_Repeat 298897 300179 1237 + . . scaffold164 GLEAN mRNA 298897 300179 1 - . ID=CGI_10021863; scaffold164 TRF Tandem_Repeat 298897 300179 1285 + . . scaffold164 GLEAN mRNA 298897 300179 1 - . ID=CGI_10021863; scaffold164 TRF Tandem_Repeat 298897 300179 1348 + . . scaffold164 GLEAN mRNA 300705 301655 1 - . ID=CGI_10021863; scaffold164 TRF Tandem_Repeat 300705 301655 702 + . . scaffold164 GLEAN mRNA 320368 320396 1 + . ID=CGI_10021865; scaffold164 TRF Tandem_Repeat 320368 320396 58 + . . scaffold164 GLEAN mRNA 337378 337808 0.605961 - . ID=CGI_10021867; scaffold164 TRF Tandem_Repeat 337378 337808 718 + . . scaffold164 GLEAN mRNA 338159 338690 0.605961 - . ID=CGI_10021867; scaffold164 TRF Tandem_Repeat 338159 338690 702 + . . scaffold164 GLEAN mRNA 339243 339789 0.605961 - . ID=CGI_10021867; scaffold164 TRF Tandem_Repeat 339243 339789 793 + . . scaffold164 GLEAN mRNA 345094 345450 0.605961 - . ID=CGI_10021867; scaffold164 TRF Tandem_Repeat 345094 345450 506 + . . scaffold164 GLEAN mRNA 346132 346176 0.605961 - . ID=CGI_10021867; scaffold164 TRF Tandem_Repeat 346132 346176 90 + . . scaffold164 GLEAN mRNA 346235 346276 0.605961 - . ID=CGI_10021867; scaffold164 TRF Tandem_Repeat 346235 346276 54 + . . scaffold164 GLEAN mRNA 350570 351124 0.605961 - . ID=CGI_10021867; scaffold164 TRF Tandem_Repeat 350570 351124 652 + . . scaffold164 GLEAN mRNA 352377 352425 0.605961 - . ID=CGI_10021867; scaffold164 TRF Tandem_Repeat 352377 352425 53 + . . scaffold164 GLEAN mRNA 353610 354241 0.605961 - . ID=CGI_10021867; scaffold164 TRF Tandem_Repeat 353610 354241 771 + . . scaffold164 GLEAN mRNA 368778 369365 0.605961 - . ID=CGI_10021867; scaffold164 TRF Tandem_Repeat 368778 369365 915 + . . scaffold164 GLEAN mRNA 368778 369438 0.605961 - . ID=CGI_10021867; scaffold164 TRF Tandem_Repeat 368778 369438 935 + . . scaffold164 GLEAN mRNA 368778 369444 0.605961 - . ID=CGI_10021867; scaffold164 TRF Tandem_Repeat 368778 369444 929 + . . scaffold164 GLEAN mRNA 462885 463965 0.999993 - . ID=CGI_10021871; scaffold164 TRF Tandem_Repeat 462885 463965 1433 + . . scaffold164 GLEAN mRNA 464869 464954 0.999993 - . ID=CGI_10021871; scaffold164 TRF Tandem_Repeat 464869 464954 93 + . . scaffold164 GLEAN mRNA 467453 467974 0.999993 - . ID=CGI_10021871; scaffold164 TRF Tandem_Repeat 467453 467974 733 + . . scaffold164 GLEAN mRNA 468399 469662 0.999993 - . ID=CGI_10021871; scaffold164 TRF Tandem_Repeat 468399 469662 1679 + . . scaffold164 GLEAN mRNA 482195 482249 0.99818 - . ID=CGI_10021873; scaffold164 TRF Tandem_Repeat 482195 482249 110 + . . scaffold164 GLEAN mRNA 488454 488693 1 - . ID=CGI_10021874; scaffold164 TRF Tandem_Repeat 488454 488693 435 + . . scaffold164 GLEAN mRNA 499758 499796 1 - . ID=CGI_10021874; scaffold164 TRF Tandem_Repeat 499758 499796 78 + . . scaffold164 GLEAN mRNA 499758 499796 0.558382 + . ID=CGI_10021875; scaffold164 TRF Tandem_Repeat 499758 499796 78 + . . scaffold164 GLEAN mRNA 512305 512751 0.54485 - . ID=CGI_10021877; scaffold164 TRF Tandem_Repeat 512305 512751 795 + . . scaffold164 GLEAN mRNA 552437 552652 0.99899 - . ID=CGI_10021878; scaffold164 TRF Tandem_Repeat 552437 552652 234 + . . scaffold164 GLEAN mRNA 554824 554984 0.99899 - . ID=CGI_10021878; scaffold164 TRF Tandem_Repeat 554824 554984 187 + . . scaffold164 GLEAN mRNA 557938 558711 0.99899 - . ID=CGI_10021878; scaffold164 TRF Tandem_Repeat 557938 558711 691 + . . scaffold164 GLEAN mRNA 560609 560812 0.99899 - . ID=CGI_10021878; scaffold164 TRF Tandem_Repeat 560609 560812 291 + . . scaffold164 GLEAN mRNA 560904 560982 0.99899 - . ID=CGI_10021878; scaffold164 TRF Tandem_Repeat 560904 560982 122 + . . scaffold164 GLEAN mRNA 563317 563365 0.99899 - . ID=CGI_10021878; scaffold164 TRF Tandem_Repeat 563317 563365 82 + . . scaffold164 GLEAN mRNA 588508 588673 0.583594 - . ID=CGI_10021879; scaffold164 TRF Tandem_Repeat 588508 588673 246 + . . scaffold164 GLEAN mRNA 591153 591183 0.583594 - . ID=CGI_10021879; scaffold164 TRF Tandem_Repeat 591153 591183 53 + . . scaffold164 GLEAN mRNA 679684 680807 0.811014 - . ID=CGI_10021883; scaffold164 TRF Tandem_Repeat 679684 680807 2113 + . . scaffold1862 GLEAN mRNA 1243 1304 0.958579 - . ID=CGI_10021884; scaffold1862 TRF Tandem_Repeat 1243 1304 80 + . . scaffold1862 GLEAN mRNA 1246 1303 0.958579 - . ID=CGI_10021884; scaffold1862 TRF Tandem_Repeat 1246 1303 55 + . . scaffold1862 GLEAN mRNA 18870 18918 0.996037 - . ID=CGI_10021885; scaffold1862 TRF Tandem_Repeat 18870 18918 89 + . . scaffold1862 GLEAN mRNA 126568 127364 0.993836 - . ID=CGI_10021889; scaffold1862 TRF Tandem_Repeat 126568 127364 1148 + . . scaffold1862 GLEAN mRNA 130302 130370 0.993836 - . ID=CGI_10021889; scaffold1862 TRF Tandem_Repeat 130302 130370 129 + . . scaffold1862 GLEAN mRNA 131703 131769 0.993836 - . ID=CGI_10021889; scaffold1862 TRF Tandem_Repeat 131703 131769 57 + . . scaffold1862 GLEAN mRNA 131699 131755 0.993836 - . ID=CGI_10021889; scaffold1862 TRF Tandem_Repeat 131699 131755 55 + . . scaffold1862 GLEAN mRNA 138763 138857 0.648527 + . ID=CGI_10021890; scaffold1862 TRF Tandem_Repeat 138763 138857 172 + . . scaffold1862 GLEAN mRNA 138763 138967 0.648527 + . ID=CGI_10021890; scaffold1862 TRF Tandem_Repeat 138763 138967 299 + . . scaffold1862 GLEAN mRNA 138861 138967 0.648527 + . ID=CGI_10021890; scaffold1862 TRF Tandem_Repeat 138861 138967 205 + . . scaffold1862 GLEAN mRNA 170650 170712 0.953083 - . ID=CGI_10021893; scaffold1862 TRF Tandem_Repeat 170650 170712 126 + . . scaffold1862 GLEAN mRNA 179906 179930 0.953083 - . ID=CGI_10021893; scaffold1862 TRF Tandem_Repeat 179906 179930 50 + . . scaffold1862 GLEAN mRNA 194597 195139 0.953083 - . ID=CGI_10021893; scaffold1862 WUBlastX LINE_L1 194597 195139 97 + . . scaffold1862 GLEAN mRNA 190301 190933 0.953083 - . ID=CGI_10021893; scaffold1862 WUBlastX LINE_L1 190301 190933 177 + . . scaffold1862 GLEAN mRNA 191071 191376 0.953083 - . ID=CGI_10021893; scaffold1862 WUBlastX LINE_L1-Tx1 191071 191376 72 + . . scaffold1862 GLEAN mRNA 190891 191364 0.953083 - . ID=CGI_10021893; scaffold1862 WUBlastX LINE_L1 190891 191364 47 + . . scaffold1862 GLEAN mRNA 189690 190310 0.953083 - . ID=CGI_10021893; scaffold1862 WUBlastX LINE_L1 189690 190310 248 + . . scaffold1862 GLEAN mRNA 190181 190837 0.953083 - . ID=CGI_10021893; scaffold1862 WUBlastX LINE_L1-Tx1 190181 190837 308 + . . scaffold1862 GLEAN mRNA 194792 195166 0.953083 - . ID=CGI_10021893; scaffold1862 WUBlastX LINE_L1-Tx1 194792 195166 243 + . . scaffold1862 GLEAN mRNA 194711 195166 0.953083 - . ID=CGI_10021893; scaffold1862 WUBlastX LINE_L1-Tx1 194711 195166 187 + . . scaffold1862 GLEAN mRNA 189804 190298 0.953083 - . ID=CGI_10021893; scaffold1862 WUBlastX LINE_L1-Tx1 189804 190298 352 + . . scaffold1862 GLEAN mRNA 195171 196733 0.953083 - . ID=CGI_10021893; scaffold1862 WUBlastX LINE_L1-Tx1 195171 196733 335 + . . scaffold1862 GLEAN mRNA 243855 243894 0.593234 - . ID=CGI_10021894; scaffold1862 TRF Tandem_Repeat 243855 243894 73 + . . scaffold1862 GLEAN mRNA 249778 249826 1 + . ID=CGI_10021895; scaffold1862 TRF Tandem_Repeat 249778 249826 89 + . . scaffold1862 GLEAN mRNA 266602 266644 1 + . ID=CGI_10021896; scaffold1862 TRF Tandem_Repeat 266602 266644 86 + . . scaffold1862 GLEAN mRNA 268701 269479 1 + . ID=CGI_10021896; scaffold1862 TRF Tandem_Repeat 268701 269479 1008 + . . scaffold1862 GLEAN mRNA 311306 311653 0.513253 + . ID=CGI_10021898; scaffold1862 TRF Tandem_Repeat 311306 311653 138 + . . scaffold1862 GLEAN mRNA 311445 311609 0.513253 + . ID=CGI_10021898; scaffold1862 TRF Tandem_Repeat 311445 311609 80 + . . scaffold1862 GLEAN mRNA 312895 313216 0.513253 + . ID=CGI_10021898; scaffold1862 TRF Tandem_Repeat 312895 313216 509 + . . scaffold1862 GLEAN mRNA 313712 313750 0.513253 + . ID=CGI_10021898; scaffold1862 TRF Tandem_Repeat 313712 313750 78 + . . scaffold1862 GLEAN mRNA 314153 314423 0.513253 + . ID=CGI_10021898; scaffold1862 TRF Tandem_Repeat 314153 314423 416 + . . scaffold1862 GLEAN mRNA 314919 314987 0.513253 + . ID=CGI_10021898; scaffold1862 TRF Tandem_Repeat 314919 314987 138 + . . scaffold1862 GLEAN mRNA 311031 311687 0.513253 + . ID=CGI_10021898; scaffold1862 TRF Tandem_Repeat 311031 311687 1041 + . . scaffold1862 GLEAN mRNA 311253 311398 0.513253 + . ID=CGI_10021898; scaffold1862 TRF Tandem_Repeat 311253 311398 58 + . . scaffold1862 GLEAN mRNA 311253 311573 0.513253 + . ID=CGI_10021898; scaffold1862 TRF Tandem_Repeat 311253 311573 143 + . . scaffold1862 GLEAN mRNA 357429 357480 0.465666 + . ID=CGI_10021901; scaffold1862 TRF Tandem_Repeat 357429 357480 104 + . . scaffold1862 GLEAN mRNA 361358 361432 0.465666 + . ID=CGI_10021901; scaffold1862 TRF Tandem_Repeat 361358 361432 141 + . . scaffold1862 GLEAN mRNA 361489 361574 0.465666 + . ID=CGI_10021901; scaffold1862 TRF Tandem_Repeat 361489 361574 63 + . . scaffold1862 GLEAN mRNA 361506 361572 0.465666 + . ID=CGI_10021901; scaffold1862 TRF Tandem_Repeat 361506 361572 98 + . . scaffold1862 GLEAN mRNA 368081 368108 0.465666 + . ID=CGI_10021901; scaffold1862 TRF Tandem_Repeat 368081 368108 56 + . . scaffold1862 GLEAN mRNA 368108 368138 0.465666 + . ID=CGI_10021901; scaffold1862 TRF Tandem_Repeat 368108 368138 62 + . . scaffold1862 GLEAN mRNA 368494 368971 0.465666 + . ID=CGI_10021901; scaffold1862 TRF Tandem_Repeat 368494 368971 609 + . . scaffold1862 GLEAN mRNA 368494 368971 0.465666 + . ID=CGI_10021901; scaffold1862 TRF Tandem_Repeat 368494 368971 594 + . . scaffold1862 GLEAN mRNA 377025 377262 0.465666 + . ID=CGI_10021901; scaffold1862 TRF Tandem_Repeat 377025 377262 253 + . . scaffold1862 GLEAN mRNA 382302 382704 0.721379 + . ID=CGI_10021902; scaffold1862 TRF Tandem_Repeat 382302 382704 653 + . . scaffold1862 GLEAN mRNA 388710 388881 0.999735 + . ID=CGI_10021903; scaffold1862 TRF Tandem_Repeat 388710 388881 179 + . . scaffold1862 GLEAN mRNA 390480 391290 0.999735 + . ID=CGI_10021903; scaffold1862 TRF Tandem_Repeat 390480 391290 580 + . . scaffold1862 GLEAN mRNA 390497 391290 0.999735 + . ID=CGI_10021903; scaffold1862 TRF Tandem_Repeat 390497 391290 933 + . . scaffold1862 GLEAN mRNA 390497 391290 0.999735 + . ID=CGI_10021903; scaffold1862 TRF Tandem_Repeat 390497 391290 1111 + . . scaffold1862 GLEAN mRNA 451601 451626 0.999651 + . ID=CGI_10021908; scaffold1862 TRF Tandem_Repeat 451601 451626 52 + . . scaffold1862 GLEAN mRNA 511841 512009 0.867813 + . ID=CGI_10021914; scaffold1862 TRF Tandem_Repeat 511841 512009 230 + . . scaffold1862 GLEAN mRNA 517765 518006 0.867813 + . ID=CGI_10021914; scaffold1862 TRF Tandem_Repeat 517765 518006 317 + . . scaffold1862 GLEAN mRNA 545497 545528 0.423254 + . ID=CGI_10021916; scaffold1862 TRF Tandem_Repeat 545497 545528 57 + . . scaffold1862 GLEAN mRNA 550526 551618 0.423254 + . ID=CGI_10021916; scaffold1862 TRF Tandem_Repeat 550526 551618 1683 + . . scaffold1862 GLEAN mRNA 553325 553415 0.423254 + . ID=CGI_10021916; scaffold1862 TRF Tandem_Repeat 553325 553415 80 + . . scaffold1862 GLEAN mRNA 545497 545528 0.761184 - . ID=CGI_10021917; scaffold1862 TRF Tandem_Repeat 545497 545528 57 + . . scaffold1862 GLEAN mRNA 550526 551618 0.761184 - . ID=CGI_10021917; scaffold1862 TRF Tandem_Repeat 550526 551618 1683 + . . scaffold1862 GLEAN mRNA 553325 553415 0.761184 - . ID=CGI_10021917; scaffold1862 TRF Tandem_Repeat 553325 553415 80 + . . scaffold1862 GLEAN mRNA 619466 619654 0.999817 + . ID=CGI_10021919; scaffold1862 TRF Tandem_Repeat 619466 619654 155 + . . scaffold1862 GLEAN mRNA 622759 622891 0.990947 + . ID=CGI_10021920; scaffold1862 TRF Tandem_Repeat 622759 622891 162 + . . scaffold1862 GLEAN mRNA 623067 623670 0.990947 + . ID=CGI_10021920; scaffold1862 TRF Tandem_Repeat 623067 623670 652 + . . scaffold1862 GLEAN mRNA 623067 623670 0.990947 + . ID=CGI_10021920; scaffold1862 TRF Tandem_Repeat 623067 623670 746 + . . scaffold1862 GLEAN mRNA 628445 628727 0.990947 + . ID=CGI_10021920; scaffold1862 TRF Tandem_Repeat 628445 628727 129 + . . scaffold1862 GLEAN mRNA 628472 628656 0.990947 + . ID=CGI_10021920; scaffold1862 TRF Tandem_Repeat 628472 628656 96 + . . scaffold1862 GLEAN mRNA 628522 628728 0.990947 + . ID=CGI_10021920; scaffold1862 TRF Tandem_Repeat 628522 628728 164 + . . scaffold1862 GLEAN mRNA 632116 632390 0.990947 + . ID=CGI_10021920; scaffold1862 TRF Tandem_Repeat 632116 632390 336 + . . scaffold1862 GLEAN mRNA 650661 650774 0.999988 - . ID=CGI_10021921; scaffold1862 TRF Tandem_Repeat 650661 650774 108 + . . scaffold1862 GLEAN mRNA 652387 652804 0.999988 - . ID=CGI_10021921; scaffold1862 TRF Tandem_Repeat 652387 652804 434 + . . scaffold1862 GLEAN mRNA 652394 652795 0.999988 - . ID=CGI_10021921; scaffold1862 TRF Tandem_Repeat 652394 652795 553 + . . scaffold1862 GLEAN mRNA 656081 656861 1 - . ID=CGI_10021923; scaffold1862 TRF Tandem_Repeat 656081 656861 553 + . . scaffold1862 GLEAN mRNA 656181 656941 1 - . ID=CGI_10021923; scaffold1862 TRF Tandem_Repeat 656181 656941 1218 + . . scaffold1862 GLEAN mRNA 657028 657073 1 - . ID=CGI_10021923; scaffold1862 TRF Tandem_Repeat 657028 657073 60 + . . scaffold1862 GLEAN mRNA 657641 658153 1 - . ID=CGI_10021923; scaffold1862 WUBlastX DNA_Kolobok-IS4 657641 658153 51 + . . scaffold1862 GLEAN mRNA 657803 658153 1 - . ID=CGI_10021923; scaffold1862 WUBlastX DNA_IS4EU 657803 658153 56 + . . scaffold1862 GLEAN mRNA 659197 659583 1 - . ID=CGI_10021923; scaffold1862 WUBlastX DNA_IS4EU 659197 659583 187 + . . scaffold1862 GLEAN mRNA 659029 659691 1 - . ID=CGI_10021923; scaffold1862 WUBlastX DNA_Kolobok-IS4 659029 659691 173 + . . scaffold1862 GLEAN mRNA 658552 658866 1 - . ID=CGI_10021923; scaffold1862 WUBlastX DNA_IS4EU 658552 658866 51 + . . scaffold1862 GLEAN mRNA 658717 659691 1 - . ID=CGI_10021923; scaffold1862 WUBlastX DNA_IS4EU 658717 659691 141 + . . scaffold1862 GLEAN mRNA 660073 661257 1 - . ID=CGI_10021923; scaffold1862 WUBlastX DNA_IS4EU 660073 661257 557 - . . scaffold1862 GLEAN mRNA 682254 682294 0.615282 - . ID=CGI_10021924; scaffold1862 TRF Tandem_Repeat 682254 682294 82 + . . scaffold1086 GLEAN mRNA 78726 78781 0.15447 + . ID=CGI_10021931; scaffold1086 TRF Tandem_Repeat 78726 78781 112 + . . scaffold1086 GLEAN mRNA 81099 81142 0.15447 + . ID=CGI_10021931; scaffold1086 TRF Tandem_Repeat 81099 81142 88 + . . scaffold1086 GLEAN mRNA 91548 91590 0.15447 + . ID=CGI_10021931; scaffold1086 TRF Tandem_Repeat 91548 91590 77 + . . scaffold1086 GLEAN mRNA 103665 103714 0.15447 + . ID=CGI_10021931; scaffold1086 TRF Tandem_Repeat 103665 103714 91 + . . scaffold1086 GLEAN mRNA 103923 103978 0.15447 + . ID=CGI_10021931; scaffold1086 TRF Tandem_Repeat 103923 103978 112 + . . scaffold1086 GLEAN mRNA 101911 102408 0.15447 + . ID=CGI_10021931; scaffold1086 WUBlastX LINE_CR1 101911 102408 107 - . . scaffold1086 GLEAN mRNA 102133 102612 0.15447 + . ID=CGI_10021931; scaffold1086 WUBlastX LINE_Jockey 102133 102612 104 - . . scaffold1086 GLEAN mRNA 102103 102522 0.15447 + . ID=CGI_10021931; scaffold1086 WUBlastX LINE_RTE-X 102103 102522 206 - . . scaffold1086 GLEAN mRNA 170001 170070 0.996426 - . ID=CGI_10021934; scaffold1086 TRF Tandem_Repeat 170001 170070 113 + . . scaffold1086 GLEAN mRNA 173942 174006 0.817565 + . ID=CGI_10021936; scaffold1086 TRF Tandem_Repeat 173942 174006 109 + . . scaffold1086 GLEAN mRNA 274786 275076 0.974826 + . ID=CGI_10021939; scaffold1086 TRF Tandem_Repeat 274786 275076 401 + . . scaffold1086 GLEAN mRNA 279268 279312 0.974826 + . ID=CGI_10021939; scaffold1086 TRF Tandem_Repeat 279268 279312 90 + . . scaffold1086 GLEAN mRNA 284593 284659 0.974826 + . ID=CGI_10021939; scaffold1086 TRF Tandem_Repeat 284593 284659 134 + . . scaffold1086 GLEAN mRNA 310484 310536 0.999981 - . ID=CGI_10021942; scaffold1086 TRF Tandem_Repeat 310484 310536 106 + . . scaffold1086 GLEAN mRNA 321339 321404 0.999981 - . ID=CGI_10021942; scaffold1086 TRF Tandem_Repeat 321339 321404 125 + . . scaffold1086 GLEAN mRNA 339141 339189 0.999942 - . ID=CGI_10021943; scaffold1086 TRF Tandem_Repeat 339141 339189 98 + . . scaffold1086 GLEAN mRNA 342140 342170 0.999942 - . ID=CGI_10021943; scaffold1086 TRF Tandem_Repeat 342140 342170 53 + . . scaffold1086 GLEAN mRNA 370157 370330 0.990448 - . ID=CGI_10021944; scaffold1086 TRF Tandem_Repeat 370157 370330 144 + . . scaffold1086 GLEAN mRNA 404401 405210 0.769305 - . ID=CGI_10021945; scaffold1086 TRF Tandem_Repeat 404401 405210 1210 + . . scaffold1086 GLEAN mRNA 404401 405210 0.769305 - . ID=CGI_10021945; scaffold1086 TRF Tandem_Repeat 404401 405210 1270 + . . scaffold1086 GLEAN mRNA 432353 432416 0.816846 + . ID=CGI_10021946; scaffold1086 TRF Tandem_Repeat 432353 432416 128 + . . scaffold1086 GLEAN mRNA 434097 434887 0.816846 + . ID=CGI_10021946; scaffold1086 TRF Tandem_Repeat 434097 434887 956 + . . scaffold1086 GLEAN mRNA 434097 434887 0.816846 + . ID=CGI_10021946; scaffold1086 TRF Tandem_Repeat 434097 434887 980 + . . scaffold1086 GLEAN mRNA 435541 435714 0.816846 + . ID=CGI_10021946; scaffold1086 TRF Tandem_Repeat 435541 435714 294 + . . scaffold1086 GLEAN mRNA 459170 459199 0.555551 - . ID=CGI_10021947; scaffold1086 TRF Tandem_Repeat 459170 459199 60 + . . scaffold1086 GLEAN mRNA 519522 519568 0.999998 + . ID=CGI_10021950; scaffold1086 TRF Tandem_Repeat 519522 519568 62 + . . scaffold1086 GLEAN mRNA 519520 519570 0.999998 + . ID=CGI_10021950; scaffold1086 TRF Tandem_Repeat 519520 519570 75 + . . scaffold1086 GLEAN mRNA 520249 520317 0.999998 + . ID=CGI_10021950; scaffold1086 TRF Tandem_Repeat 520249 520317 72 + . . scaffold1086 GLEAN mRNA 521616 521652 0.999998 + . ID=CGI_10021950; scaffold1086 TRF Tandem_Repeat 521616 521652 65 + . . scaffold1086 GLEAN mRNA 521652 521688 0.999998 + . ID=CGI_10021950; scaffold1086 TRF Tandem_Repeat 521652 521688 74 + . . scaffold1108 GLEAN mRNA 18803 19450 1 + . ID=CGI_10021955; scaffold1108 TRF Tandem_Repeat 18803 19450 810 + . . scaffold1108 GLEAN mRNA 20638 21342 1 + . ID=CGI_10021955; scaffold1108 TRF Tandem_Repeat 20638 21342 821 + . . scaffold1108 GLEAN mRNA 28906 29207 0.999088 - . ID=CGI_10021956; scaffold1108 TRF Tandem_Repeat 28906 29207 532 + . . scaffold1108 GLEAN mRNA 47076 47121 0.798675 + . ID=CGI_10021957; scaffold1108 TRF Tandem_Repeat 47076 47121 65 + . . scaffold1108 GLEAN mRNA 63562 64854 0.999999 - . ID=CGI_10021958; scaffold1108 WUBlastX DNA_En-Spm 63562 65844 1258 - . . scaffold1108 GLEAN mRNA 144375 145071 0.981604 + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 144375 145071 1020 + . . scaffold1108 GLEAN mRNA 145746 146296 0.981604 + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 145746 146296 753 + . . scaffold1108 GLEAN mRNA 147073 147261 0.981604 + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 147073 147261 306 + . . scaffold1108 GLEAN mRNA 150231 150422 0.981604 + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 150231 150422 330 + . . scaffold1108 GLEAN mRNA 150231 150521 0.981604 + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 150231 150521 451 + . . scaffold1108 GLEAN mRNA 150231 150521 0.981604 + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 150231 150521 451 + . . scaffold1108 GLEAN mRNA 150425 150521 0.981604 + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 150425 150521 194 + . . scaffold1108 GLEAN mRNA 157007 159226 0.981604 + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 157007 159226 797 + . . scaffold1108 GLEAN mRNA 157007 159236 0.981604 + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 157007 159236 2340 + . . scaffold1108 GLEAN mRNA 158240 158378 0.981604 + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 158240 158378 63 + . . scaffold1108 GLEAN mRNA 157071 158337 0.981604 + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 157071 158337 1354 + . . scaffold1108 GLEAN mRNA 158333 159236 0.981604 + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 158333 159236 1074 + . . scaffold1108 GLEAN mRNA 173078 173632 0.999387 + . ID=CGI_10021964; scaffold1108 TRF Tandem_Repeat 173078 173632 957 + . . scaffold1108 GLEAN mRNA 195008 195070 0.995798 + . ID=CGI_10021966; scaffold1108 TRF Tandem_Repeat 195008 195070 126 + . . scaffold1108 GLEAN mRNA 195165 195415 0.995798 + . ID=CGI_10021966; scaffold1108 TRF Tandem_Repeat 195165 195415 330 + . . scaffold1108 GLEAN mRNA 195675 195813 0.995798 + . ID=CGI_10021966; scaffold1108 TRF Tandem_Repeat 195675 195813 253 + . . scaffold1108 GLEAN mRNA 210354 210487 0.999635 - . ID=CGI_10021967; scaffold1108 TRF Tandem_Repeat 210354 210487 175 + . . scaffold1108 GLEAN mRNA 238569 238686 0.999792 - . ID=CGI_10021968; scaffold1108 TRF Tandem_Repeat 238569 238686 65 + . . scaffold1108 GLEAN mRNA 238543 238690 0.999792 - . ID=CGI_10021968; scaffold1108 TRF Tandem_Repeat 238543 238690 260 + . . scaffold1108 GLEAN mRNA 252437 252737 0.999752 - . ID=CGI_10021969; scaffold1108 TRF Tandem_Repeat 252437 252737 469 + . . scaffold1108 GLEAN mRNA 283596 285109 0.998637 + . ID=CGI_10021970; scaffold1108 TRF Tandem_Repeat 283596 285109 2425 + . . scaffold1108 GLEAN mRNA 301217 301621 0.460093 + . ID=CGI_10021972; scaffold1108 TRF Tandem_Repeat 301217 301621 810 + . . scaffold1108 GLEAN mRNA 305034 305214 0.460093 + . ID=CGI_10021972; scaffold1108 TRF Tandem_Repeat 305034 305214 237 + . . scaffold1108 GLEAN mRNA 326398 326989 1 + . ID=CGI_10021973; scaffold1108 TRF Tandem_Repeat 326398 326989 480 + . . scaffold1108 GLEAN mRNA 329660 330582 1 + . ID=CGI_10021973; scaffold1108 TRF Tandem_Repeat 329660 330582 1336 + . . scaffold1108 GLEAN mRNA 336670 336955 1 + . ID=CGI_10021973; scaffold1108 TRF Tandem_Repeat 336670 336955 331 + . . scaffold1108 GLEAN mRNA 391852 391895 0.988737 - . ID=CGI_10021977; scaffold1108 TRF Tandem_Repeat 391852 391895 54 + . . scaffold1108 GLEAN mRNA 395162 395929 0.988737 - . ID=CGI_10021977; scaffold1108 TRF Tandem_Repeat 395162 395929 1129 + . . scaffold1108 GLEAN mRNA 399620 399677 0.5 + . ID=CGI_10021978; scaffold1108 TRF Tandem_Repeat 399620 399677 72 + . . scaffold1108 GLEAN mRNA 407300 408036 0.992007 + . ID=CGI_10021979; scaffold1108 TRF Tandem_Repeat 407300 408036 1133 + . . scaffold1108 GLEAN mRNA 416799 416847 0.990447 + . ID=CGI_10021980; scaffold1108 TRF Tandem_Repeat 416799 416847 98 + . . scaffold1108 GLEAN mRNA 417065 417160 0.990447 + . ID=CGI_10021980; scaffold1108 TRF Tandem_Repeat 417065 417160 106 + . . scaffold1108 GLEAN mRNA 423818 423959 0.990447 + . ID=CGI_10021980; scaffold1108 TRF Tandem_Repeat 423818 423959 221 + . . scaffold1108 GLEAN mRNA 425531 425643 0.990447 + . ID=CGI_10021980; scaffold1108 TRF Tandem_Repeat 425531 425643 154 + . . scaffold1108 GLEAN mRNA 420219 420347 0.990447 + . ID=CGI_10021980; scaffold1108 WUBlastX LTR_Gypsy 420219 420347 76 - . . scaffold1108 GLEAN mRNA 428553 428586 0.990447 + . ID=CGI_10021980; scaffold1108 TRF Tandem_Repeat 428553 428586 68 + . . scaffold1108 GLEAN mRNA 428968 429597 0.990447 + . ID=CGI_10021980; scaffold1108 TRF Tandem_Repeat 428968 429597 581 + . . scaffold1108 GLEAN mRNA 428968 429597 0.990447 + . ID=CGI_10021980; scaffold1108 TRF Tandem_Repeat 428968 429597 779 + . . scaffold1108 GLEAN mRNA 438359 438798 0.375679 - . ID=CGI_10021982; scaffold1108 TRF Tandem_Repeat 438359 438798 408 + . . scaffold1108 GLEAN mRNA 462161 462192 0.999922 - . ID=CGI_10021983; scaffold1108 TRF Tandem_Repeat 462161 462192 55 + . . scaffold1108 GLEAN mRNA 476302 476421 0.999949 + . ID=CGI_10021984; scaffold1108 TRF Tandem_Repeat 476302 476421 59 + . . scaffold1108 GLEAN mRNA 476310 476444 0.999949 + . ID=CGI_10021984; scaffold1108 TRF Tandem_Repeat 476310 476444 220 + . . scaffold1108 GLEAN mRNA 477010 477975 0.999949 + . ID=CGI_10021984; scaffold1108 TRF Tandem_Repeat 477010 477975 1605 + . . scaffold1108 GLEAN mRNA 490630 490696 0.999992 + . ID=CGI_10021986; scaffold1108 TRF Tandem_Repeat 490630 490696 116 + . . scaffold1108 GLEAN mRNA 546819 546853 0.999978 + . ID=CGI_10021988; scaffold1108 TRF Tandem_Repeat 546819 546853 52 + . . scaffold1108 GLEAN mRNA 641906 642784 0.978727 + . ID=CGI_10021989; scaffold1108 TRF Tandem_Repeat 641906 642784 1271 + . . scaffold1108 GLEAN mRNA 643728 643874 0.978727 + . ID=CGI_10021989; scaffold1108 TRF Tandem_Repeat 643728 643874 73 + . . scaffold1108 GLEAN mRNA 643790 643919 0.978727 + . ID=CGI_10021989; scaffold1108 TRF Tandem_Repeat 643790 643919 93 + . . scaffold1108 GLEAN mRNA 653361 653408 0.863017 + . ID=CGI_10021990; scaffold1108 TRF Tandem_Repeat 653361 653408 96 + . . scaffold1108 GLEAN mRNA 656037 656080 0.863017 + . ID=CGI_10021990; scaffold1108 TRF Tandem_Repeat 656037 656080 88 + . . scaffold1108 GLEAN mRNA 656667 656711 0.863017 + . ID=CGI_10021990; scaffold1108 TRF Tandem_Repeat 656667 656711 90 + . . scaffold1108 GLEAN mRNA 656799 656839 0.863017 + . ID=CGI_10021990; scaffold1108 TRF Tandem_Repeat 656799 656839 73 + . . scaffold721 GLEAN mRNA 79104 79170 0.992034 + . ID=CGI_10021995; scaffold721 TRF Tandem_Repeat 79104 79170 134 + . . scaffold721 GLEAN mRNA 83717 84010 0.992034 + . ID=CGI_10021995; scaffold721 WUBlastX LINE_L2 83717 84010 152 + . . scaffold721 GLEAN mRNA 83194 83847 0.992034 + . ID=CGI_10021995; scaffold721 WUBlastX LINE_L2 83194 83847 324 + . . scaffold721 GLEAN mRNA 84424 84570 0.992034 + . ID=CGI_10021995; scaffold721 WUBlastX LINE_L2 84424 84570 80 + . . scaffold721 GLEAN mRNA 83025 83123 0.992034 + . ID=CGI_10021995; scaffold721 WUBlastX LINE_L2 83025 83123 42 + . . scaffold721 GLEAN mRNA 83197 83709 0.992034 + . ID=CGI_10021995; scaffold721 WUBlastX LINE_L2 83197 83709 328 + . . scaffold721 GLEAN mRNA 84015 84410 0.992034 + . ID=CGI_10021995; scaffold721 WUBlastX LINE_L2 84015 84410 191 + . . scaffold721 GLEAN mRNA 83071 83721 0.992034 + . ID=CGI_10021995; scaffold721 WUBlastX LINE_L2 83071 83721 289 + . . scaffold721 GLEAN mRNA 82922 83014 0.992034 + . ID=CGI_10021995; scaffold721 WUBlastX LINE_L2 82922 83014 42 + . . scaffold721 GLEAN mRNA 82904 83008 0.992034 + . ID=CGI_10021995; scaffold721 WUBlastX LINE_L2 82904 83008 30 + . . scaffold721 GLEAN mRNA 84424 84603 0.992034 + . ID=CGI_10021995; scaffold721 WUBlastX LINE_L2 84424 84603 55 + . . scaffold721 GLEAN mRNA 110257 110292 0.998359 - . ID=CGI_10021996; scaffold721 TRF Tandem_Repeat 110257 110292 54 + . . scaffold721 GLEAN mRNA 139935 139972 0.999321 + . ID=CGI_10021997; scaffold721 TRF Tandem_Repeat 139935 139972 76 + . . scaffold721 GLEAN mRNA 145655 145711 0.999321 + . ID=CGI_10021997; scaffold721 TRF Tandem_Repeat 145655 145711 59 + . . scaffold721 GLEAN mRNA 173689 174420 0.988804 - . ID=CGI_10021998; scaffold721 TRF Tandem_Repeat 173689 174420 1286 + . . scaffold721 GLEAN mRNA 178044 178097 0.988804 - . ID=CGI_10021998; scaffold721 TRF Tandem_Repeat 178044 178097 74 + . . scaffold721 GLEAN mRNA 315120 315186 0.998653 + . ID=CGI_10021999; scaffold721 TRF Tandem_Repeat 315120 315186 134 + . . scaffold721 GLEAN mRNA 323264 323304 0.998653 + . ID=CGI_10021999; scaffold721 TRF Tandem_Repeat 323264 323304 66 + . . scaffold721 GLEAN mRNA 350170 350463 0.412686 + . ID=CGI_10022001; scaffold721 WUBlastX LINE_CR1 350170 350463 59 + . . scaffold721 GLEAN mRNA 376047 376351 0.64159 + . ID=CGI_10022002; scaffold721 TRF Tandem_Repeat 376047 376351 371 + . . scaffold721 GLEAN mRNA 378796 379228 0.64159 + . ID=CGI_10022002; scaffold721 TRF Tandem_Repeat 378796 379228 625 + . . scaffold721 GLEAN mRNA 386994 387169 0.64159 + . ID=CGI_10022002; scaffold721 TRF Tandem_Repeat 386994 387169 83 + . . scaffold721 GLEAN mRNA 395474 395606 0.64159 + . ID=CGI_10022002; scaffold721 TRF Tandem_Repeat 395474 395606 121 + . . scaffold721 GLEAN mRNA 422438 422667 0.689742 + . ID=CGI_10022004; scaffold721 TRF Tandem_Repeat 422438 422667 302 + . . scaffold721 GLEAN mRNA 488928 489150 0.841398 - . ID=CGI_10022007; scaffold721 TRF Tandem_Repeat 488928 489150 246 + . . scaffold721 GLEAN mRNA 488923 489180 0.841398 - . ID=CGI_10022007; scaffold721 TRF Tandem_Repeat 488923 489180 262 + . . scaffold721 GLEAN mRNA 488952 489209 0.841398 - . ID=CGI_10022007; scaffold721 TRF Tandem_Repeat 488952 489209 115 + . . scaffold721 GLEAN mRNA 494277 494929 0.841398 - . ID=CGI_10022007; scaffold721 TRF Tandem_Repeat 494277 494929 965 + . . scaffold721 GLEAN mRNA 494946 494988 0.841398 - . ID=CGI_10022007; scaffold721 TRF Tandem_Repeat 494946 494988 59 + . . scaffold721 GLEAN mRNA 496018 496054 0.841398 - . ID=CGI_10022007; scaffold721 TRF Tandem_Repeat 496018 496054 74 + . . scaffold721 GLEAN mRNA 501870 502345 0.841398 - . ID=CGI_10022007; scaffold721 TRF Tandem_Repeat 501870 502345 740 + . . scaffold721 GLEAN mRNA 526056 526233 0.861698 + . ID=CGI_10022008; scaffold721 TRF Tandem_Repeat 526056 526233 94 + . . scaffold721 GLEAN mRNA 535889 535946 0.432556 - . ID=CGI_10022009; scaffold721 TRF Tandem_Repeat 535889 535946 116 + . . scaffold721 GLEAN mRNA 537888 537923 0.432556 - . ID=CGI_10022009; scaffold721 TRF Tandem_Repeat 537888 537923 72 + . . scaffold721 GLEAN mRNA 540409 540617 0.432556 - . ID=CGI_10022009; scaffold721 TRF Tandem_Repeat 540409 540617 391 + . . scaffold721 GLEAN mRNA 540409 540989 0.432556 - . ID=CGI_10022009; scaffold721 TRF Tandem_Repeat 540409 540989 545 + . . scaffold721 GLEAN mRNA 540409 540989 0.432556 - . ID=CGI_10022009; scaffold721 TRF Tandem_Repeat 540409 540989 545 + . . scaffold721 GLEAN mRNA 540616 540989 0.432556 - . ID=CGI_10022009; scaffold721 TRF Tandem_Repeat 540616 540989 649 + . . scaffold721 GLEAN mRNA 535889 535946 0.999676 + . ID=CGI_10022010; scaffold721 TRF Tandem_Repeat 535889 535946 116 + . . scaffold721 GLEAN mRNA 537888 537923 0.999676 + . ID=CGI_10022010; scaffold721 TRF Tandem_Repeat 537888 537923 72 + . . scaffold721 GLEAN mRNA 540409 540617 0.999676 + . ID=CGI_10022010; scaffold721 TRF Tandem_Repeat 540409 540617 391 + . . scaffold721 GLEAN mRNA 540409 540989 0.999676 + . ID=CGI_10022010; scaffold721 TRF Tandem_Repeat 540409 540989 545 + . . scaffold721 GLEAN mRNA 540409 540989 0.999676 + . ID=CGI_10022010; scaffold721 TRF Tandem_Repeat 540409 540989 545 + . . scaffold721 GLEAN mRNA 540616 540989 0.999676 + . ID=CGI_10022010; scaffold721 TRF Tandem_Repeat 540616 540989 649 + . . scaffold721 GLEAN mRNA 571580 571892 0.999675 - . ID=CGI_10022013; scaffold721 TRF Tandem_Repeat 571580 571892 599 + . . scaffold721 GLEAN mRNA 571868 572108 0.999675 - . ID=CGI_10022013; scaffold721 TRF Tandem_Repeat 571868 572108 178 + . . scaffold721 GLEAN mRNA 571868 572152 0.999675 - . ID=CGI_10022013; scaffold721 TRF Tandem_Repeat 571868 572152 135 + . . scaffold721 GLEAN mRNA 572368 572608 0.999675 - . ID=CGI_10022013; scaffold721 TRF Tandem_Repeat 572368 572608 178 + . . scaffold721 GLEAN mRNA 572368 572652 0.999675 - . ID=CGI_10022013; scaffold721 TRF Tandem_Repeat 572368 572652 135 + . . scaffold721 GLEAN mRNA 603896 604056 0.998859 - . ID=CGI_10022014; scaffold721 TRF Tandem_Repeat 603896 604056 277 + . . scaffold721 GLEAN mRNA 594330 594929 0.998859 - . ID=CGI_10022014; scaffold721 WUBlastX LINE_RTE-X 594330 594929 115 - . . scaffold721 GLEAN mRNA 594228 594896 0.998859 - . ID=CGI_10022014; scaffold721 WUBlastX LINE_RTE-X 594228 594896 86 - . . scaffold721 GLEAN mRNA 624033 624072 1 + . ID=CGI_10022015; scaffold721 TRF Tandem_Repeat 624033 624072 80 + . . scaffold721 GLEAN mRNA 658509 658548 0.510867 + . ID=CGI_10022017; scaffold721 TRF Tandem_Repeat 658509 658548 80 + . . scaffold721 GLEAN mRNA 659139 659181 0.510867 + . ID=CGI_10022017; scaffold721 TRF Tandem_Repeat 659139 659181 86 + . . scaffold721 GLEAN mRNA 662501 662531 0.999999 + . ID=CGI_10022018; scaffold721 TRF Tandem_Repeat 662501 662531 62 + . . scaffold721 GLEAN mRNA 665833 666046 0.999999 + . ID=CGI_10022018; scaffold721 TRF Tandem_Repeat 665833 666046 151 + . . scaffold721 GLEAN mRNA 666072 666257 0.999999 + . ID=CGI_10022018; scaffold721 TRF Tandem_Repeat 666072 666257 113 + . . scaffold106 GLEAN mRNA 93111 93336 1 + . ID=CGI_10022025; scaffold106 TRF Tandem_Repeat 93111 93336 207 + . . scaffold106 GLEAN mRNA 93102 93321 1 + . ID=CGI_10022025; scaffold106 TRF Tandem_Repeat 93102 93321 240 + . . scaffold106 GLEAN mRNA 183607 184868 0.985412 - . ID=CGI_10022028; scaffold106 TRF Tandem_Repeat 183607 184868 2337 + . . scaffold106 GLEAN mRNA 190648 190674 0.985412 - . ID=CGI_10022028; scaffold106 TRF Tandem_Repeat 190648 190674 54 + . . scaffold106 GLEAN mRNA 226478 226711 0.999167 + . ID=CGI_10022031; scaffold106 WUBlastX LTR_ERVK 226478 226711 28 + . . scaffold106 GLEAN mRNA 231138 231172 0.999167 + . ID=CGI_10022031; scaffold106 TRF Tandem_Repeat 231138 231172 70 + . . scaffold106 GLEAN mRNA 233049 233096 0.999167 + . ID=CGI_10022031; scaffold106 TRF Tandem_Repeat 233049 233096 96 + . . scaffold106 GLEAN mRNA 235359 235411 0.999167 + . ID=CGI_10022031; scaffold106 TRF Tandem_Repeat 235359 235411 54 + . . scaffold106 GLEAN mRNA 278824 279560 1 - . ID=CGI_10022035; scaffold106 TRF Tandem_Repeat 278824 279560 990 + . . scaffold106 GLEAN mRNA 302093 302180 0.998359 - . ID=CGI_10022037; scaffold106 TRF Tandem_Repeat 302093 302180 140 + . . scaffold106 GLEAN mRNA 316010 316064 0.702157 - . ID=CGI_10022039; scaffold106 TRF Tandem_Repeat 316010 316064 83 + . . scaffold106 GLEAN mRNA 328666 328883 0.702157 - . ID=CGI_10022039; scaffold106 TRF Tandem_Repeat 328666 328883 252 + . . scaffold106 GLEAN mRNA 329359 329732 0.702157 - . ID=CGI_10022039; scaffold106 TRF Tandem_Repeat 329359 329732 266 + . . scaffold106 GLEAN mRNA 329359 329731 0.702157 - . ID=CGI_10022039; scaffold106 TRF Tandem_Repeat 329359 329731 344 + . . scaffold106 GLEAN mRNA 339365 339415 1 - . ID=CGI_10022040; scaffold106 TRF Tandem_Repeat 339365 339415 102 + . . scaffold106 GLEAN mRNA 362692 362749 0.400764 + . ID=CGI_10022042; scaffold106 TRF Tandem_Repeat 362692 362749 77 + . . scaffold106 GLEAN mRNA 404286 404470 0.999999 - . ID=CGI_10022043; scaffold106 TRF Tandem_Repeat 404286 404470 298 + . . scaffold106 GLEAN mRNA 426046 426091 1 - . ID=CGI_10022045; scaffold106 TRF Tandem_Repeat 426046 426091 92 + . . scaffold106 GLEAN mRNA 502281 502411 0.728135 - . ID=CGI_10022047; scaffold106 TRF Tandem_Repeat 502281 502411 136 + . . scaffold106 GLEAN mRNA 607797 607909 0.863731 + . ID=CGI_10022049; scaffold106 TRF Tandem_Repeat 607797 607909 190 + . . scaffold106 GLEAN mRNA 627347 627378 0.734569 - . ID=CGI_10022050; scaffold106 TRF Tandem_Repeat 627347 627378 55 + . . scaffold106 GLEAN mRNA 653681 653748 0.999129 - . ID=CGI_10022052; scaffold106 TRF Tandem_Repeat 653681 653748 100 + . . scaffold106 GLEAN mRNA 654740 654982 0.999129 - . ID=CGI_10022052; scaffold106 WUBlastX LTR_Gypsy 654740 654982 26 - . . scaffold106 GLEAN mRNA 654779 654970 0.999129 - . ID=CGI_10022052; scaffold106 WUBlastX LTR_Gypsy 654779 654970 28 - . . scaffold106 GLEAN mRNA 653521 653661 0.999129 - . ID=CGI_10022052; scaffold106 WUBlastX LTR_Gypsy 653521 653661 28 - . . scaffold106 GLEAN mRNA 689033 689173 1 + . ID=CGI_10022056; scaffold106 TRF Tandem_Repeat 689033 689173 117 + . . scaffold394 GLEAN mRNA 20607 20728 0.999742 - . ID=CGI_10022058; scaffold394 TRF Tandem_Repeat 20607 20728 113 + . . scaffold394 GLEAN mRNA 21096 21152 0.999742 - . ID=CGI_10022058; scaffold394 TRF Tandem_Repeat 21096 21152 114 + . . scaffold394 GLEAN mRNA 25244 25332 1 + . ID=CGI_10022059; scaffold394 TRF Tandem_Repeat 25244 25332 81 + . . scaffold394 GLEAN mRNA 50927 50974 0.893195 - . ID=CGI_10022062; scaffold394 TRF Tandem_Repeat 50927 50974 96 + . . scaffold394 GLEAN mRNA 60641 60826 0.893195 - . ID=CGI_10022062; scaffold394 TRF Tandem_Repeat 60641 60826 126 + . . scaffold394 GLEAN mRNA 60641 60826 0.840059 + . ID=CGI_10022063; scaffold394 TRF Tandem_Repeat 60641 60826 126 + . . scaffold394 GLEAN mRNA 62700 62836 0.840059 + . ID=CGI_10022063; scaffold394 TRF Tandem_Repeat 62700 62836 78 + . . scaffold394 GLEAN mRNA 172709 173092 0.69554 - . ID=CGI_10022068; scaffold394 TRF Tandem_Repeat 172709 173092 716 + . . scaffold394 GLEAN mRNA 198136 198492 0.999604 - . ID=CGI_10022070; scaffold394 TRF Tandem_Repeat 198136 198492 420 + . . scaffold394 GLEAN mRNA 198106 198492 0.999604 - . ID=CGI_10022070; scaffold394 TRF Tandem_Repeat 198106 198492 480 + . . scaffold394 GLEAN mRNA 201989 202025 0.999604 - . ID=CGI_10022070; scaffold394 TRF Tandem_Repeat 201989 202025 74 + . . scaffold394 GLEAN mRNA 216910 216955 0.999572 - . ID=CGI_10022071; scaffold394 TRF Tandem_Repeat 216910 216955 76 + . . scaffold394 GLEAN mRNA 231300 231380 0.999649 + . ID=CGI_10022073; scaffold394 TRF Tandem_Repeat 231300 231380 162 + . . scaffold394 GLEAN mRNA 243937 244037 0.999649 + . ID=CGI_10022073; scaffold394 TRF Tandem_Repeat 243937 244037 139 + . . scaffold394 GLEAN mRNA 253719 253744 0.999649 + . ID=CGI_10022073; scaffold394 TRF Tandem_Repeat 253719 253744 52 + . . scaffold394 GLEAN mRNA 256944 256986 0.999649 + . ID=CGI_10022073; scaffold394 TRF Tandem_Repeat 256944 256986 86 + . . scaffold394 GLEAN mRNA 281673 281736 0.49564 - . ID=CGI_10022076; scaffold394 TRF Tandem_Repeat 281673 281736 128 + . . scaffold394 GLEAN mRNA 293295 293537 0.296609 + . ID=CGI_10022077; scaffold394 WUBlastX DNA_Kolobok 293295 293537 101 - . . scaffold394 GLEAN mRNA 292104 292223 0.296609 + . ID=CGI_10022077; scaffold394 WUBlastX DNA_Kolobok 292104 292223 20 + . . scaffold394 GLEAN mRNA 292479 292697 0.296609 + . ID=CGI_10022077; scaffold394 WUBlastX DNA_Kolobok 292479 292697 92 + . . scaffold394 GLEAN mRNA 302167 302216 1 + . ID=CGI_10022078; scaffold394 TRF Tandem_Repeat 302167 302216 66 + . . scaffold394 GLEAN mRNA 312939 312984 0.874382 - . ID=CGI_10022079; scaffold394 TRF Tandem_Repeat 312939 312984 92 + . . scaffold394 GLEAN mRNA 321157 321187 0.874382 - . ID=CGI_10022079; scaffold394 TRF Tandem_Repeat 321157 321187 62 + . . scaffold394 GLEAN mRNA 326541 326578 0.874382 - . ID=CGI_10022079; scaffold394 TRF Tandem_Repeat 326541 326578 51 + . . scaffold394 GLEAN mRNA 326716 327618 0.874382 - . ID=CGI_10022079; scaffold394 TRF Tandem_Repeat 326716 327618 1314 + . . scaffold394 GLEAN mRNA 328551 328696 0.874382 - . ID=CGI_10022079; scaffold394 TRF Tandem_Repeat 328551 328696 73 + . . scaffold394 GLEAN mRNA 328613 328760 0.874382 - . ID=CGI_10022079; scaffold394 TRF Tandem_Repeat 328613 328760 102 + . . scaffold394 GLEAN mRNA 338474 338504 0.874382 - . ID=CGI_10022079; scaffold394 TRF Tandem_Repeat 338474 338504 62 + . . scaffold394 GLEAN mRNA 349068 349127 0.874382 - . ID=CGI_10022079; scaffold394 TRF Tandem_Repeat 349068 349127 50 + . . scaffold394 GLEAN mRNA 326541 326578 0.999735 + . ID=CGI_10022080; scaffold394 TRF Tandem_Repeat 326541 326578 51 + . . scaffold394 GLEAN mRNA 326716 327618 0.999735 + . ID=CGI_10022080; scaffold394 TRF Tandem_Repeat 326716 327618 1314 + . . scaffold394 GLEAN mRNA 328551 328696 0.999735 + . ID=CGI_10022080; scaffold394 TRF Tandem_Repeat 328551 328696 73 + . . scaffold394 GLEAN mRNA 328613 328760 0.999735 + . ID=CGI_10022080; scaffold394 TRF Tandem_Repeat 328613 328760 102 + . . scaffold394 GLEAN mRNA 400693 400825 0.69894 - . ID=CGI_10022084; scaffold394 TRF Tandem_Repeat 400693 400825 72 + . . scaffold394 GLEAN mRNA 402821 402864 0.69894 - . ID=CGI_10022084; scaffold394 TRF Tandem_Repeat 402821 402864 88 + . . scaffold394 GLEAN mRNA 408770 408821 0.69894 - . ID=CGI_10022084; scaffold394 TRF Tandem_Repeat 408770 408821 104 + . . scaffold394 GLEAN mRNA 415036 415094 0.69894 - . ID=CGI_10022084; scaffold394 TRF Tandem_Repeat 415036 415094 66 + . . scaffold394 GLEAN mRNA 436623 437234 0.532272 + . ID=CGI_10022085; scaffold394 WUBlastX LTR_DIRS 436623 437234 201 + . . scaffold394 GLEAN mRNA 436776 437234 0.532272 + . ID=CGI_10022085; scaffold394 WUBlastX LTR_DIRS 436776 437234 337 + . . scaffold394 GLEAN mRNA 437007 437276 0.532272 + . ID=CGI_10022085; scaffold394 WUBlastX LTR_Gypsy-Cigr 437007 437276 77 + . . scaffold394 GLEAN mRNA 436485 437216 0.532272 + . ID=CGI_10022085; scaffold394 WUBlastX LTR_Gypsy 436485 437216 20 + . . scaffold394 GLEAN mRNA 449700 449842 0.532272 + . ID=CGI_10022085; scaffold394 TRF Tandem_Repeat 449700 449842 175 + . . scaffold394 GLEAN mRNA 451039 451081 0.998492 - . ID=CGI_10022086; scaffold394 TRF Tandem_Repeat 451039 451081 50 + . . scaffold394 GLEAN mRNA 455091 455122 0.998492 - . ID=CGI_10022086; scaffold394 TRF Tandem_Repeat 455091 455122 64 + . . scaffold394 GLEAN mRNA 492553 492604 0.813951 - . ID=CGI_10022088; scaffold394 TRF Tandem_Repeat 492553 492604 95 + . . scaffold394 GLEAN mRNA 492814 492853 0.813951 - . ID=CGI_10022088; scaffold394 TRF Tandem_Repeat 492814 492853 80 + . . scaffold394 GLEAN mRNA 492981 493127 0.813951 - . ID=CGI_10022088; scaffold394 WUBlastX DNA_Harbinger 492981 493127 62 + . . scaffold394 GLEAN mRNA 493368 493526 0.813951 - . ID=CGI_10022088; scaffold394 WUBlastX DNA_Harbinger 493368 493526 48 + . . scaffold394 GLEAN mRNA 493410 493547 0.813951 - . ID=CGI_10022088; scaffold394 WUBlastX DNA_Harbinger 493410 493547 42 + . . scaffold394 GLEAN mRNA 520139 520172 1 + . ID=CGI_10022089; scaffold394 TRF Tandem_Repeat 520139 520172 50 + . . scaffold394 GLEAN mRNA 537588 537666 0.999192 - . ID=CGI_10022090; scaffold394 TRF Tandem_Repeat 537588 537666 158 + . . scaffold394 GLEAN mRNA 539449 539824 0.999958 - . ID=CGI_10022091; scaffold394 TRF Tandem_Repeat 539449 539824 479 + . . scaffold394 GLEAN mRNA 539449 540381 0.999958 - . ID=CGI_10022091; scaffold394 TRF Tandem_Repeat 539449 540381 796 + . . scaffold394 GLEAN mRNA 540005 540381 0.999958 - . ID=CGI_10022091; scaffold394 TRF Tandem_Repeat 540005 540381 388 + . . scaffold394 GLEAN mRNA 540077 540381 0.999958 - . ID=CGI_10022091; scaffold394 TRF Tandem_Repeat 540077 540381 396 + . . scaffold394 GLEAN mRNA 542961 543018 1 + . ID=CGI_10022092; scaffold394 TRF Tandem_Repeat 542961 543018 98 + . . scaffold394 GLEAN mRNA 554161 554403 0.811205 + . ID=CGI_10022093; scaffold394 WUBlastX LTR_Gypsy 554161 554403 25 + . . scaffold394 GLEAN mRNA 559240 559449 0.811205 + . ID=CGI_10022093; scaffold394 WUBlastX DNA_hAT-hATw 559240 559449 36 + . . scaffold394 GLEAN mRNA 569312 569912 0.999676 + . ID=CGI_10022094; scaffold394 TRF Tandem_Repeat 569312 569912 844 + . . scaffold394 GLEAN mRNA 584406 586130 0.749146 - . ID=CGI_10022095; scaffold394 TRF Tandem_Repeat 584406 586130 2500 + . . scaffold394 GLEAN mRNA 604827 604868 0.999949 - . ID=CGI_10022096; scaffold394 TRF Tandem_Repeat 604827 604868 59 + . . scaffold394 GLEAN mRNA 605647 606449 0.999949 - . ID=CGI_10022096; scaffold394 TRF Tandem_Repeat 605647 606449 896 + . . scaffold394 GLEAN mRNA 695593 695663 0.584925 + . ID=CGI_10022105; scaffold394 TRF Tandem_Repeat 695593 695663 142 + . . scaffold394 GLEAN mRNA 714005 714156 0.988889 - . ID=CGI_10022107; scaffold394 TRF Tandem_Repeat 714005 714156 160 + . . scaffold394 GLEAN mRNA 714751 714997 0.988889 - . ID=CGI_10022107; scaffold394 TRF Tandem_Repeat 714751 714997 404 + . . scaffold109 GLEAN mRNA 150092 150145 0.960125 - . ID=CGI_10022109; scaffold109 TRF Tandem_Repeat 150092 150145 99 + . . scaffold109 GLEAN mRNA 150969 151010 0.960125 - . ID=CGI_10022109; scaffold109 TRF Tandem_Repeat 150969 151010 84 + . . scaffold109 GLEAN mRNA 156994 157129 0.959391 - . ID=CGI_10022110; scaffold109 TRF Tandem_Repeat 156994 157129 218 + . . scaffold109 GLEAN mRNA 158507 158536 0.959391 - . ID=CGI_10022110; scaffold109 TRF Tandem_Repeat 158507 158536 60 + . . scaffold109 GLEAN mRNA 169784 169814 0.959391 - . ID=CGI_10022110; scaffold109 TRF Tandem_Repeat 169784 169814 53 + . . scaffold109 GLEAN mRNA 237408 238073 0.997753 - . ID=CGI_10022112; scaffold109 TRF Tandem_Repeat 237408 238073 710 + . . scaffold109 GLEAN mRNA 239996 240154 0.997753 - . ID=CGI_10022112; scaffold109 WUBlastX DNA_hAT-Ac 239996 240154 59 + . . scaffold109 GLEAN mRNA 252772 253380 0.997753 - . ID=CGI_10022112; scaffold109 WUBlastX DNA_TcMar-Tc1 252772 253380 61 - . . scaffold109 GLEAN mRNA 253261 253410 0.997753 - . ID=CGI_10022112; scaffold109 WUBlastX DNA_TcMar-Tc1 253261 253410 29 - . . scaffold109 GLEAN mRNA 252374 253243 0.997753 - . ID=CGI_10022112; scaffold109 WUBlastX DNA_TcMar-Tc1 252374 253243 185 - . . scaffold109 GLEAN mRNA 273700 275049 0.997753 - . ID=CGI_10022112; scaffold109 WUBlastX DNA_TcMar-Tc2 273700 275049 1088 + . . scaffold109 GLEAN mRNA 290570 291094 0.997753 - . ID=CGI_10022112; scaffold109 TRF Tandem_Repeat 290570 291094 624 + . . scaffold109 GLEAN mRNA 290570 291094 0.997753 - . ID=CGI_10022112; scaffold109 TRF Tandem_Repeat 290570 291094 637 + . . scaffold109 GLEAN mRNA 310813 310865 0.446526 - . ID=CGI_10022113; scaffold109 TRF Tandem_Repeat 310813 310865 56 + . . scaffold109 GLEAN mRNA 314945 315037 0.446526 - . ID=CGI_10022113; scaffold109 TRF Tandem_Repeat 314945 315037 80 + . . scaffold109 GLEAN mRNA 315444 316343 0.446526 - . ID=CGI_10022113; scaffold109 TRF Tandem_Repeat 315444 316343 1615 + . . scaffold109 GLEAN mRNA 343213 343260 0.446526 - . ID=CGI_10022113; scaffold109 TRF Tandem_Repeat 343213 343260 60 + . . scaffold109 GLEAN mRNA 343216 343260 0.446526 - . ID=CGI_10022113; scaffold109 TRF Tandem_Repeat 343216 343260 81 + . . scaffold109 GLEAN mRNA 330266 330589 0.446526 - . ID=CGI_10022113; scaffold109 WUBlastX LINE_RTE-X 330266 330589 74 - . . scaffold109 GLEAN mRNA 330197 330589 0.446526 - . ID=CGI_10022113; scaffold109 WUBlastX LINE_RTE-X 330197 330589 54 - . . scaffold109 GLEAN mRNA 330377 330766 0.446526 - . ID=CGI_10022113; scaffold109 WUBlastX LINE_RTE-X 330377 330766 96 - . . scaffold109 GLEAN mRNA 355395 356084 0.446526 - . ID=CGI_10022113; scaffold109 TRF Tandem_Repeat 355395 356084 1109 + . . scaffold109 GLEAN mRNA 360406 361236 0.446526 - . ID=CGI_10022113; scaffold109 TRF Tandem_Repeat 360406 361236 1117 + . . scaffold109 GLEAN mRNA 389303 389499 0.521451 - . ID=CGI_10022115; scaffold109 TRF Tandem_Repeat 389303 389499 292 + . . scaffold109 GLEAN mRNA 392068 392729 0.521451 - . ID=CGI_10022115; scaffold109 TRF Tandem_Repeat 392068 392729 979 + . . scaffold109 GLEAN mRNA 413583 414404 0.512268 + . ID=CGI_10022116; scaffold109 TRF Tandem_Repeat 413583 414404 929 + . . scaffold109 GLEAN mRNA 415962 416218 0.512268 + . ID=CGI_10022116; scaffold109 TRF Tandem_Repeat 415962 416218 94 + . . scaffold109 GLEAN mRNA 416113 416228 0.512268 + . ID=CGI_10022116; scaffold109 TRF Tandem_Repeat 416113 416228 55 + . . scaffold109 GLEAN mRNA 416077 416253 0.512268 + . ID=CGI_10022116; scaffold109 TRF Tandem_Repeat 416077 416253 116 + . . scaffold109 GLEAN mRNA 419580 419619 0.512268 + . ID=CGI_10022116; scaffold109 TRF Tandem_Repeat 419580 419619 80 + . . scaffold109 GLEAN mRNA 422094 422185 0.512268 + . ID=CGI_10022116; scaffold109 TRF Tandem_Repeat 422094 422185 163 + . . scaffold109 GLEAN mRNA 445957 446002 1 + . ID=CGI_10022118; scaffold109 TRF Tandem_Repeat 445957 446002 92 + . . scaffold109 GLEAN mRNA 446655 446939 1 + . ID=CGI_10022118; scaffold109 TRF Tandem_Repeat 446655 446939 153 + . . scaffold109 GLEAN mRNA 446655 446935 1 + . ID=CGI_10022118; scaffold109 TRF Tandem_Repeat 446655 446935 175 + . . scaffold109 GLEAN mRNA 448512 449295 1 + . ID=CGI_10022118; scaffold109 TRF Tandem_Repeat 448512 449295 383 + . . scaffold109 GLEAN mRNA 486991 487030 0.513442 + . ID=CGI_10022120; scaffold109 TRF Tandem_Repeat 486991 487030 80 + . . scaffold109 GLEAN mRNA 502943 502972 0.513442 + . ID=CGI_10022120; scaffold109 TRF Tandem_Repeat 502943 502972 60 + . . scaffold109 GLEAN mRNA 520103 520149 0.918507 + . ID=CGI_10022121; scaffold109 TRF Tandem_Repeat 520103 520149 85 + . . scaffold109 GLEAN mRNA 523693 523720 0.918507 + . ID=CGI_10022121; scaffold109 TRF Tandem_Repeat 523693 523720 56 + . . scaffold109 GLEAN mRNA 526773 526817 0.918507 + . ID=CGI_10022121; scaffold109 TRF Tandem_Repeat 526773 526817 63 + . . scaffold109 GLEAN mRNA 534284 534325 0.918507 + . ID=CGI_10022121; scaffold109 TRF Tandem_Repeat 534284 534325 84 + . . scaffold109 GLEAN mRNA 544996 545638 0.999999 - . ID=CGI_10022122; scaffold109 TRF Tandem_Repeat 544996 545638 617 + . . scaffold109 GLEAN mRNA 544995 545537 0.999999 - . ID=CGI_10022122; scaffold109 TRF Tandem_Repeat 544995 545537 761 + . . scaffold109 GLEAN mRNA 544995 545638 0.999999 - . ID=CGI_10022122; scaffold109 TRF Tandem_Repeat 544995 545638 750 + . . scaffold109 GLEAN mRNA 569823 569857 0.930391 - . ID=CGI_10022123; scaffold109 TRF Tandem_Repeat 569823 569857 70 + . . scaffold109 GLEAN mRNA 587130 587175 0.930391 - . ID=CGI_10022123; scaffold109 TRF Tandem_Repeat 587130 587175 92 + . . scaffold109 GLEAN mRNA 588123 588157 0.930391 - . ID=CGI_10022123; scaffold109 TRF Tandem_Repeat 588123 588157 52 + . . scaffold109 GLEAN mRNA 599337 599392 0.930391 - . ID=CGI_10022123; scaffold109 TRF Tandem_Repeat 599337 599392 112 + . . scaffold109 GLEAN mRNA 615727 616605 0.966112 + . ID=CGI_10022124; scaffold109 TRF Tandem_Repeat 615727 616605 1286 + . . scaffold109 GLEAN mRNA 617549 617695 0.966112 + . ID=CGI_10022124; scaffold109 TRF Tandem_Repeat 617549 617695 73 + . . scaffold109 GLEAN mRNA 617611 617740 0.966112 + . ID=CGI_10022124; scaffold109 TRF Tandem_Repeat 617611 617740 93 + . . scaffold109 GLEAN mRNA 621474 621523 0.966112 + . ID=CGI_10022124; scaffold109 TRF Tandem_Repeat 621474 621523 100 + . . scaffold109 GLEAN mRNA 627721 627922 0.966112 + . ID=CGI_10022124; scaffold109 TRF Tandem_Repeat 627721 627922 235 + . . scaffold109 GLEAN mRNA 644830 644863 0.271219 + . ID=CGI_10022126; scaffold109 TRF Tandem_Repeat 644830 644863 68 + . . scaffold109 GLEAN mRNA 680600 680625 0.997003 + . ID=CGI_10022132; scaffold109 TRF Tandem_Repeat 680600 680625 52 + . . scaffold109 GLEAN mRNA 684536 684577 0.997003 + . ID=CGI_10022132; scaffold109 TRF Tandem_Repeat 684536 684577 84 + . . scaffold513 GLEAN mRNA 2929 2996 0.917684 + . ID=CGI_10022134; scaffold513 TRF Tandem_Repeat 2929 2996 136 + . . scaffold513 GLEAN mRNA 9573 10559 0.917684 + . ID=CGI_10022134; scaffold513 WUBlastX LTR_Pao 9573 10559 399 + . . scaffold513 GLEAN mRNA 13064 13495 0.917684 + . ID=CGI_10022134; scaffold513 WUBlastX LTR_Pao 13064 13495 316 + . . scaffold513 GLEAN mRNA 10884 11360 0.917684 + . ID=CGI_10022134; scaffold513 WUBlastX LTR_Pao 10884 11360 182 + . . scaffold513 GLEAN mRNA 9180 9332 0.917684 + . ID=CGI_10022134; scaffold513 WUBlastX LTR_Pao 9180 9332 41 + . . scaffold513 GLEAN mRNA 9918 10640 0.917684 + . ID=CGI_10022134; scaffold513 WUBlastX LTR_Pao 9918 10640 418 + . . scaffold513 GLEAN mRNA 11485 12846 0.917684 + . ID=CGI_10022134; scaffold513 WUBlastX LTR_Pao 11485 12846 881 + . . scaffold513 GLEAN mRNA 10699 11019 0.917684 + . ID=CGI_10022134; scaffold513 WUBlastX LTR_Pao 10699 11019 79 + . . scaffold513 GLEAN mRNA 11025 11609 0.917684 + . ID=CGI_10022134; scaffold513 WUBlastX LTR_Pao 11025 11609 220 + . . scaffold513 GLEAN mRNA 12229 12957 0.917684 + . ID=CGI_10022134; scaffold513 WUBlastX LTR_Pao 12229 12957 208 + . . scaffold513 GLEAN mRNA 11019 11354 0.917684 + . ID=CGI_10022134; scaffold513 WUBlastX LTR_Pao 11019 11354 247 + . . scaffold513 GLEAN mRNA 12870 13070 0.917684 + . ID=CGI_10022134; scaffold513 WUBlastX LTR_Pao 12870 13070 178 + . . scaffold513 GLEAN mRNA 10642 11019 0.917684 + . ID=CGI_10022134; scaffold513 WUBlastX LTR_Pao 10642 11019 42 + . . scaffold513 GLEAN mRNA 27663 27760 0.917684 + . ID=CGI_10022134; scaffold513 TRF Tandem_Repeat 27663 27760 187 + . . scaffold513 GLEAN mRNA 33317 33342 0.917684 + . ID=CGI_10022134; scaffold513 TRF Tandem_Repeat 33317 33342 52 + . . scaffold513 GLEAN mRNA 35842 35872 0.917684 + . ID=CGI_10022134; scaffold513 TRF Tandem_Repeat 35842 35872 62 + . . scaffold513 GLEAN mRNA 83542 83581 0.754729 - . ID=CGI_10022137; scaffold513 TRF Tandem_Repeat 83542 83581 53 + . . scaffold513 GLEAN mRNA 86017 86051 0.754729 - . ID=CGI_10022137; scaffold513 TRF Tandem_Repeat 86017 86051 52 + . . scaffold513 GLEAN mRNA 156696 156857 0.819622 - . ID=CGI_10022138; scaffold513 WUBlastX DNA_IS4EU 156696 156875 71 - . . scaffold513 GLEAN mRNA 156684 156857 0.819622 - . ID=CGI_10022138; scaffold513 WUBlastX DNA_IS4EU 156684 156899 46 - . . scaffold513 GLEAN mRNA 155792 156529 0.819622 - . ID=CGI_10022138; scaffold513 WUBlastX DNA_Kolobok-IS4 155792 156529 371 + . . scaffold513 GLEAN mRNA 185101 185141 0.999676 + . ID=CGI_10022139; scaffold513 TRF Tandem_Repeat 185101 185141 82 + . . scaffold513 GLEAN mRNA 188670 188717 0.999676 + . ID=CGI_10022139; scaffold513 TRF Tandem_Repeat 188670 188717 50 + . . scaffold513 GLEAN mRNA 279959 280000 1 - . ID=CGI_10022147; scaffold513 TRF Tandem_Repeat 279959 280000 84 + . . scaffold513 GLEAN mRNA 281236 281357 1 - . ID=CGI_10022147; scaffold513 TRF Tandem_Repeat 281236 281357 136 + . . scaffold513 GLEAN mRNA 292104 292133 0.99956 + . ID=CGI_10022148; scaffold513 TRF Tandem_Repeat 292104 292133 60 + . . scaffold513 GLEAN mRNA 350424 350448 1 + . ID=CGI_10022150; scaffold513 TRF Tandem_Repeat 350424 350448 50 + . . scaffold513 GLEAN mRNA 356184 356534 0.999999 + . ID=CGI_10022151; scaffold513 WUBlastX LINE_L2 356184 356534 35 + . . scaffold513 GLEAN mRNA 356307 356600 0.999999 + . ID=CGI_10022151; scaffold513 WUBlastX LINE_L1 356307 356600 20 + . . scaffold513 GLEAN mRNA 369141 369167 0.79116 + . ID=CGI_10022153; scaffold513 TRF Tandem_Repeat 369141 369167 54 + . . scaffold513 GLEAN mRNA 370578 370682 0.79116 + . ID=CGI_10022153; scaffold513 WUBlastX DNA_Zator 370578 370682 21 + . . scaffold513 GLEAN mRNA 370872 371021 0.79116 + . ID=CGI_10022153; scaffold513 WUBlastX DNA_Zator 370872 371021 28 + . . scaffold513 GLEAN mRNA 387601 387660 0.949324 - . ID=CGI_10022154; scaffold513 TRF Tandem_Repeat 387601 387660 56 + . . scaffold513 GLEAN mRNA 388770 389030 0.949324 - . ID=CGI_10022154; scaffold513 TRF Tandem_Repeat 388770 389030 250 + . . scaffold513 GLEAN mRNA 389072 389455 0.949324 - . ID=CGI_10022154; scaffold513 TRF Tandem_Repeat 389072 389455 137 + . . scaffold513 GLEAN mRNA 389215 389378 0.949324 - . ID=CGI_10022154; scaffold513 TRF Tandem_Repeat 389215 389378 152 + . . scaffold513 GLEAN mRNA 389459 389503 0.949324 - . ID=CGI_10022154; scaffold513 TRF Tandem_Repeat 389459 389503 90 + . . scaffold513 GLEAN mRNA 396075 396253 0.949324 - . ID=CGI_10022154; scaffold513 TRF Tandem_Repeat 396075 396253 313 + . . scaffold513 GLEAN mRNA 396947 397096 0.949324 - . ID=CGI_10022154; scaffold513 TRF Tandem_Repeat 396947 397096 255 + . . scaffold513 GLEAN mRNA 416800 416836 0.99961 - . ID=CGI_10022156; scaffold513 TRF Tandem_Repeat 416800 416836 56 + . . scaffold513 GLEAN mRNA 437201 437371 0.713855 - . ID=CGI_10022159; scaffold513 TRF Tandem_Repeat 437201 437371 164 + . . scaffold513 GLEAN mRNA 437370 437538 0.713855 - . ID=CGI_10022159; scaffold513 TRF Tandem_Repeat 437370 437538 126 + . . scaffold513 GLEAN mRNA 461712 462635 1 + . ID=CGI_10022160; scaffold513 TRF Tandem_Repeat 461712 462635 1254 + . . scaffold513 GLEAN mRNA 463974 464512 1 + . ID=CGI_10022160; scaffold513 TRF Tandem_Repeat 463974 464512 635 + . . scaffold513 GLEAN mRNA 490056 490143 0.986678 + . ID=CGI_10022161; scaffold513 TRF Tandem_Repeat 490056 490143 56 + . . scaffold513 GLEAN mRNA 529982 530018 0.681827 - . ID=CGI_10022162; scaffold513 TRF Tandem_Repeat 529982 530018 74 + . . scaffold513 GLEAN mRNA 552716 552840 0.740208 + . ID=CGI_10022165; scaffold513 TRF Tandem_Repeat 552716 552840 205 + . . scaffold513 GLEAN mRNA 557733 558282 0.998635 - . ID=CGI_10022166; scaffold513 TRF Tandem_Repeat 557733 558282 458 + . . scaffold513 GLEAN mRNA 575386 575413 0.998635 - . ID=CGI_10022166; scaffold513 TRF Tandem_Repeat 575386 575413 56 + . . scaffold513 GLEAN mRNA 615945 615974 0.934393 + . ID=CGI_10022174; scaffold513 TRF Tandem_Repeat 615945 615974 51 + . . scaffold513 GLEAN mRNA 631424 631459 0.934393 + . ID=CGI_10022174; scaffold513 TRF Tandem_Repeat 631424 631459 63 + . . scaffold513 GLEAN mRNA 631738 631782 0.934393 + . ID=CGI_10022174; scaffold513 TRF Tandem_Repeat 631738 631782 54 + . . scaffold880 GLEAN mRNA 12637 12665 0.917507 + . ID=CGI_10022176; scaffold880 TRF Tandem_Repeat 12637 12665 58 + . . scaffold880 GLEAN mRNA 62817 63383 0.999675 + . ID=CGI_10022178; scaffold880 TRF Tandem_Repeat 62817 63383 981 + . . scaffold880 GLEAN mRNA 91701 92423 0.999285 + . ID=CGI_10022181; scaffold880 WUBlastX LINE_Penelope 91701 92423 60 + . . scaffold880 GLEAN mRNA 91701 92102 0.999285 + . ID=CGI_10022181; scaffold880 WUBlastX LINE_Penelope 91701 92102 126 + . . scaffold880 GLEAN mRNA 91634 91684 0.999285 + . ID=CGI_10022181; scaffold880 WUBlastX LINE_Penelope 91634 91684 37 + . . scaffold880 GLEAN mRNA 161912 161946 0.999351 - . ID=CGI_10022184; scaffold880 TRF Tandem_Repeat 161912 161946 70 + . . scaffold880 GLEAN mRNA 163589 163655 0.999351 - . ID=CGI_10022184; scaffold880 TRF Tandem_Repeat 163589 163655 57 + . . scaffold880 GLEAN mRNA 174580 174642 0.999351 - . ID=CGI_10022184; scaffold880 TRF Tandem_Repeat 174580 174642 126 + . . scaffold880 GLEAN mRNA 213162 213201 0.856111 - . ID=CGI_10022185; scaffold880 TRF Tandem_Repeat 213162 213201 80 + . . scaffold880 GLEAN mRNA 214227 214281 0.856111 - . ID=CGI_10022185; scaffold880 TRF Tandem_Repeat 214227 214281 101 + . . scaffold880 GLEAN mRNA 218203 218267 0.856111 - . ID=CGI_10022185; scaffold880 TRF Tandem_Repeat 218203 218267 112 + . . scaffold880 GLEAN mRNA 233595 233763 0.856111 - . ID=CGI_10022185; scaffold880 TRF Tandem_Repeat 233595 233763 92 + . . scaffold880 GLEAN mRNA 233939 234070 0.856111 - . ID=CGI_10022185; scaffold880 TRF Tandem_Repeat 233939 234070 176 + . . scaffold880 GLEAN mRNA 234142 234298 0.856111 - . ID=CGI_10022185; scaffold880 TRF Tandem_Repeat 234142 234298 100 + . . scaffold880 GLEAN mRNA 243510 243536 0.856111 - . ID=CGI_10022185; scaffold880 TRF Tandem_Repeat 243510 243536 54 + . . scaffold880 GLEAN mRNA 245799 245840 0.856111 - . ID=CGI_10022185; scaffold880 TRF Tandem_Repeat 245799 245840 84 + . . scaffold880 GLEAN mRNA 245931 245962 0.856111 - . ID=CGI_10022185; scaffold880 TRF Tandem_Repeat 245931 245962 64 + . . scaffold880 GLEAN mRNA 248387 248537 0.856111 - . ID=CGI_10022185; scaffold880 TRF Tandem_Repeat 248387 248537 275 + . . scaffold880 GLEAN mRNA 304322 304362 0.999986 - . ID=CGI_10022190; scaffold880 TRF Tandem_Repeat 304322 304362 82 + . . scaffold880 GLEAN mRNA 305247 305867 0.999986 - . ID=CGI_10022190; scaffold880 TRF Tandem_Repeat 305247 305867 408 + . . scaffold880 GLEAN mRNA 312432 313120 0.999986 - . ID=CGI_10022191; scaffold880 TRF Tandem_Repeat 312432 313120 606 + . . scaffold880 GLEAN mRNA 312413 313120 0.999986 - . ID=CGI_10022191; scaffold880 TRF Tandem_Repeat 312413 313120 745 + . . scaffold880 GLEAN mRNA 313010 313099 0.999986 - . ID=CGI_10022191; scaffold880 TRF Tandem_Repeat 313010 313099 60 + . . scaffold880 GLEAN mRNA 316030 316121 0.999986 - . ID=CGI_10022191; scaffold880 TRF Tandem_Repeat 316030 316121 175 + . . scaffold880 GLEAN mRNA 317211 317537 0.999986 - . ID=CGI_10022191; scaffold880 TRF Tandem_Repeat 317211 317537 476 + . . scaffold880 GLEAN mRNA 337859 338282 0.665857 + . ID=CGI_10022192; scaffold880 TRF Tandem_Repeat 337859 338282 468 + . . scaffold880 GLEAN mRNA 337868 338286 0.665857 + . ID=CGI_10022192; scaffold880 TRF Tandem_Repeat 337868 338286 533 + . . scaffold880 GLEAN mRNA 337868 338286 0.665857 + . ID=CGI_10022192; scaffold880 TRF Tandem_Repeat 337868 338286 570 + . . scaffold880 GLEAN mRNA 341737 342016 0.665857 + . ID=CGI_10022192; scaffold880 TRF Tandem_Repeat 341737 342016 292 + . . scaffold880 GLEAN mRNA 341737 342016 0.665857 + . ID=CGI_10022192; scaffold880 TRF Tandem_Repeat 341737 342016 327 + . . scaffold880 GLEAN mRNA 410891 412698 0.999675 + . ID=CGI_10022195; scaffold880 TRF Tandem_Repeat 410891 412698 1964 + . . scaffold880 GLEAN mRNA 411651 411713 0.999675 + . ID=CGI_10022195; scaffold880 TRF Tandem_Repeat 411651 411713 90 + . . scaffold880 GLEAN mRNA 411650 411709 0.999675 + . ID=CGI_10022195; scaffold880 TRF Tandem_Repeat 411650 411709 66 + . . scaffold880 GLEAN mRNA 492009 492189 0.998312 - . ID=CGI_10022196; scaffold880 TRF Tandem_Repeat 492009 492189 173 + . . scaffold880 GLEAN mRNA 492217 492327 0.998312 - . ID=CGI_10022196; scaffold880 TRF Tandem_Repeat 492217 492327 105 + . . scaffold880 GLEAN mRNA 511725 512039 0.998312 - . ID=CGI_10022196; scaffold880 WUBlastX LTR_Gypsy 511725 512039 28 + . . scaffold880 GLEAN mRNA 512023 512397 0.998312 - . ID=CGI_10022196; scaffold880 WUBlastX LTR_Gypsy 512023 512397 110 + . . scaffold880 GLEAN mRNA 511785 512042 0.998312 - . ID=CGI_10022196; scaffold880 WUBlastX LTR_Gypsy 511785 512042 45 + . . scaffold880 GLEAN mRNA 512080 512487 0.998312 - . ID=CGI_10022196; scaffold880 WUBlastX LTR_Gypsy 512080 512487 121 + . . scaffold880 GLEAN mRNA 512080 512406 0.998312 - . ID=CGI_10022196; scaffold880 WUBlastX LTR_Gypsy 512080 512406 133 + . . scaffold880 GLEAN mRNA 511860 512039 0.998312 - . ID=CGI_10022196; scaffold880 WUBlastX LTR_Gypsy 511860 512039 77 + . . scaffold880 GLEAN mRNA 511960 512376 0.998312 - . ID=CGI_10022196; scaffold880 WUBlastX LTR_Gypsy 511960 512376 102 + . . scaffold880 GLEAN mRNA 521305 521421 1 - . ID=CGI_10022198; scaffold880 WUBlastX DNA_Harbinger 521305 521421 32 - . . scaffold880 GLEAN mRNA 523883 523972 0.988013 + . ID=CGI_10022199; scaffold880 TRF Tandem_Repeat 523883 523972 144 + . . scaffold880 GLEAN mRNA 529873 529941 0.988013 + . ID=CGI_10022199; scaffold880 WUBlastX DNA_Crypton 529873 530130 96 + . . scaffold880 GLEAN mRNA 529888 529941 0.988013 + . ID=CGI_10022199; scaffold880 WUBlastX DNA_Crypton 529888 530181 84 + . . scaffold880 GLEAN mRNA 533760 533957 0.438976 - . ID=CGI_10022201; scaffold880 WUBlastX LTR_Gypsy 533760 533957 36 - . . scaffold880 GLEAN mRNA 534070 534117 0.438976 - . ID=CGI_10022201; scaffold880 WUBlastX LTR_Gypsy 534070 534117 31 - . . scaffold880 GLEAN mRNA 534128 534214 0.438976 - . ID=CGI_10022201; scaffold880 WUBlastX LTR_Gypsy 534128 534214 31 - . . scaffold880 GLEAN mRNA 533542 533649 0.438976 - . ID=CGI_10022201; scaffold880 WUBlastX LTR_Gypsy 533542 533649 29 - . . scaffold880 GLEAN mRNA 540983 541031 0.438976 - . ID=CGI_10022201; scaffold880 TRF Tandem_Repeat 540983 541031 98 + . . scaffold880 GLEAN mRNA 544099 544439 0.438976 - . ID=CGI_10022201; scaffold880 TRF Tandem_Repeat 544099 544439 542 + . . scaffold880 GLEAN mRNA 544186 544389 0.438976 - . ID=CGI_10022201; scaffold880 TRF Tandem_Repeat 544186 544389 94 + . . scaffold880 GLEAN mRNA 553705 553734 0.438976 - . ID=CGI_10022201; scaffold880 TRF Tandem_Repeat 553705 553734 51 + . . scaffold880 GLEAN mRNA 545471 547003 0.438976 - . ID=CGI_10022201; scaffold880 WUBlastX LTR_Ngaro 545471 547003 977 - . . scaffold880 GLEAN mRNA 544548 545492 0.438976 - . ID=CGI_10022201; scaffold880 WUBlastX LTR_Ngaro 544548 545492 365 - . . scaffold880 GLEAN mRNA 547038 547493 0.438976 - . ID=CGI_10022201; scaffold880 WUBlastX LTR_Ngaro 547038 547493 70 - . . scaffold880 GLEAN mRNA 558175 558208 0.438976 - . ID=CGI_10022201; scaffold880 TRF Tandem_Repeat 558175 558208 68 + . . scaffold880 GLEAN mRNA 617864 617929 0.637182 - . ID=CGI_10022203; scaffold880 TRF Tandem_Repeat 617864 617929 114 + . . scaffold880 GLEAN mRNA 619296 619349 0.637182 - . ID=CGI_10022203; scaffold880 TRF Tandem_Repeat 619296 619349 108 + . . scaffold880 GLEAN mRNA 617251 617385 0.637182 - . ID=CGI_10022203; scaffold880 WUBlastX DNA_Kolobok-Hyd 617128 617385 37 - . . scaffold880 GLEAN mRNA 617251 617352 0.637182 - . ID=CGI_10022203; scaffold880 WUBlastX DNA_Kolobok-Hyd 617014 617352 23 - . . scaffold880 GLEAN mRNA 682719 682772 0.926854 - . ID=CGI_10022204; scaffold880 TRF Tandem_Repeat 682719 682772 108 + . . scaffold880 GLEAN mRNA 682844 684180 0.926854 - . ID=CGI_10022204; scaffold880 TRF Tandem_Repeat 682844 684180 1466 + . . scaffold880 GLEAN mRNA 673937 674137 0.926854 - . ID=CGI_10022204; scaffold880 WUBlastX DNA_Kolobok 673937 674137 46 - . . scaffold880 GLEAN mRNA 674236 674484 0.926854 - . ID=CGI_10022204; scaffold880 WUBlastX DNA_Kolobok 674236 674484 141 - . . scaffold880 GLEAN mRNA 673598 673813 0.926854 - . ID=CGI_10022204; scaffold880 WUBlastX DNA_Kolobok 673598 673813 40 - . . scaffold880 GLEAN mRNA 674000 674146 0.926854 - . ID=CGI_10022204; scaffold880 WUBlastX DNA_Kolobok 674000 674146 59 - . . scaffold880 GLEAN mRNA 674610 674891 0.926854 - . ID=CGI_10022204; scaffold880 WUBlastX DNA_Kolobok 674610 674891 96 - . . scaffold750 GLEAN mRNA 14731 15132 0.971968 + . ID=CGI_10022205; scaffold750 WUBlastX LINE_L2 14731 15132 32 + . . scaffold750 GLEAN mRNA 15815 16009 0.971968 + . ID=CGI_10022205; scaffold750 WUBlastX LINE_L2 15815 16009 31 + . . scaffold750 GLEAN mRNA 15013 15135 0.971968 + . ID=CGI_10022205; scaffold750 WUBlastX LINE_CR1-L2 15013 15135 40 + . . scaffold750 GLEAN mRNA 15681 15878 0.971968 + . ID=CGI_10022205; scaffold750 WUBlastX LINE_L2 15681 15878 50 + . . scaffold750 GLEAN mRNA 15138 15839 0.971968 + . ID=CGI_10022205; scaffold750 WUBlastX LINE_CR1-L2 15138 15839 190 + . . scaffold750 GLEAN mRNA 14908 15126 0.971968 + . ID=CGI_10022205; scaffold750 WUBlastX LINE_CR1 14908 15126 35 + . . scaffold750 GLEAN mRNA 19989 20013 0.971968 + . ID=CGI_10022205; scaffold750 TRF Tandem_Repeat 19989 20013 50 + . . scaffold750 GLEAN mRNA 78242 78348 1 - . ID=CGI_10022209; scaffold750 TRF Tandem_Repeat 78242 78348 214 + . . scaffold750 GLEAN mRNA 97189 97214 0.651358 - . ID=CGI_10022212; scaffold750 TRF Tandem_Repeat 97189 97214 52 + . . scaffold750 GLEAN mRNA 112112 112276 0.651358 - . ID=CGI_10022212; scaffold750 WUBlastX DNA_IS4EU 112112 112276 39 + . . scaffold750 GLEAN mRNA 112284 112466 0.651358 - . ID=CGI_10022212; scaffold750 WUBlastX DNA_IS4EU 112284 112466 65 + . . scaffold750 GLEAN mRNA 110096 110302 0.651358 - . ID=CGI_10022212; scaffold750 WUBlastX DNA_IS4EU 110096 110302 68 + . . scaffold750 GLEAN mRNA 143486 143531 0.981474 - . ID=CGI_10022214; scaffold750 TRF Tandem_Repeat 143486 143531 92 + . . scaffold750 GLEAN mRNA 146722 146959 0.981474 - . ID=CGI_10022214; scaffold750 TRF Tandem_Repeat 146722 146959 198 + . . scaffold750 GLEAN mRNA 146722 146959 0.981474 - . ID=CGI_10022214; scaffold750 TRF Tandem_Repeat 146722 146959 197 + . . scaffold750 GLEAN mRNA 149382 149424 0.981474 - . ID=CGI_10022214; scaffold750 TRF Tandem_Repeat 149382 149424 86 + . . scaffold750 GLEAN mRNA 222550 222643 0.998842 - . ID=CGI_10022216; scaffold750 TRF Tandem_Repeat 222550 222643 65 + . . scaffold750 GLEAN mRNA 270165 270266 0.989328 + . ID=CGI_10022219; scaffold750 TRF Tandem_Repeat 270165 270266 64 + . . scaffold750 GLEAN mRNA 493320 493350 0.999308 - . ID=CGI_10022220; scaffold750 TRF Tandem_Repeat 493320 493350 55 + . . scaffold750 GLEAN mRNA 542950 542997 0.999027 - . ID=CGI_10022222; scaffold750 TRF Tandem_Repeat 542950 542997 96 + . . scaffold750 GLEAN mRNA 573669 573718 0.859031 + . ID=CGI_10022224; scaffold750 TRF Tandem_Repeat 573669 573718 91 + . . scaffold750 GLEAN mRNA 577146 577266 0.859031 + . ID=CGI_10022224; scaffold750 TRF Tandem_Repeat 577146 577266 215 + . . scaffold750 GLEAN mRNA 587782 587855 0.591326 - . ID=CGI_10022225; scaffold750 TRF Tandem_Repeat 587782 587855 123 + . . scaffold750 GLEAN mRNA 587783 587852 0.591326 - . ID=CGI_10022225; scaffold750 TRF Tandem_Repeat 587783 587852 70 + . . scaffold750 GLEAN mRNA 627106 627162 1 + . ID=CGI_10022228; scaffold750 TRF Tandem_Repeat 627106 627162 105 + . . scaffold750 GLEAN mRNA 631699 631747 1 + . ID=CGI_10022229; scaffold750 TRF Tandem_Repeat 631699 631747 98 + . . scaffold750 GLEAN mRNA 637784 637860 1 + . ID=CGI_10022229; scaffold750 TRF Tandem_Repeat 637784 637860 154 + . . scaffold750 GLEAN mRNA 639342 639412 1 + . ID=CGI_10022229; scaffold750 TRF Tandem_Repeat 639342 639412 142 + . . scaffold750 GLEAN mRNA 646504 646729 1 - . ID=CGI_10022230; scaffold750 TRF Tandem_Repeat 646504 646729 280 + . . scaffold854 GLEAN mRNA 33395 33433 0.99989 - . ID=CGI_10022232; scaffold854 TRF Tandem_Repeat 33395 33433 78 + . . scaffold854 GLEAN mRNA 39948 40000 0.415791 - . ID=CGI_10022233; scaffold854 TRF Tandem_Repeat 39948 40000 55 + . . scaffold854 GLEAN mRNA 49175 49306 0.415791 - . ID=CGI_10022233; scaffold854 TRF Tandem_Repeat 49175 49306 115 + . . scaffold854 GLEAN mRNA 53903 53989 1 + . ID=CGI_10022234; scaffold854 TRF Tandem_Repeat 53903 53989 79 + . . scaffold854 GLEAN mRNA 54067 54207 1 + . ID=CGI_10022234; scaffold854 TRF Tandem_Repeat 54067 54207 147 + . . scaffold854 GLEAN mRNA 60684 60787 0.738397 + . ID=CGI_10022235; scaffold854 TRF Tandem_Repeat 60684 60787 120 + . . scaffold854 GLEAN mRNA 60817 60988 0.738397 + . ID=CGI_10022235; scaffold854 TRF Tandem_Repeat 60817 60988 120 + . . scaffold854 GLEAN mRNA 60685 60983 0.738397 + . ID=CGI_10022235; scaffold854 TRF Tandem_Repeat 60685 60983 139 + . . scaffold854 GLEAN mRNA 61366 61430 0.738397 + . ID=CGI_10022235; scaffold854 TRF Tandem_Repeat 61366 61430 62 + . . scaffold854 GLEAN mRNA 93999 94046 0.815047 - . ID=CGI_10022238; scaffold854 TRF Tandem_Repeat 93999 94046 87 + . . scaffold854 GLEAN mRNA 115222 115275 0.99948 + . ID=CGI_10022239; scaffold854 TRF Tandem_Repeat 115222 115275 94 + . . scaffold854 GLEAN mRNA 144054 144107 0.996783 + . ID=CGI_10022240; scaffold854 TRF Tandem_Repeat 144054 144107 54 + . . scaffold854 GLEAN mRNA 197222 197983 0.635503 - . ID=CGI_10022241; scaffold854 WUBlastX LINE_RTE-X 197222 197983 214 - . . scaffold854 GLEAN mRNA 197153 197233 0.635503 - . ID=CGI_10022241; scaffold854 WUBlastX LINE_Jockey 196718 197233 36 - . . scaffold854 GLEAN mRNA 200971 201125 0.458883 - . ID=CGI_10022242; scaffold854 TRF Tandem_Repeat 200971 201125 202 + . . scaffold854 GLEAN mRNA 217142 217195 0.458883 - . ID=CGI_10022242; scaffold854 TRF Tandem_Repeat 217142 217195 90 + . . scaffold854 GLEAN mRNA 222867 223008 0.458883 - . ID=CGI_10022242; scaffold854 TRF Tandem_Repeat 222867 223008 100 + . . scaffold854 GLEAN mRNA 230957 231251 0.458883 - . ID=CGI_10022242; scaffold854 TRF Tandem_Repeat 230957 231251 326 + . . scaffold854 GLEAN mRNA 267915 268606 0.681082 - . ID=CGI_10022245; scaffold854 TRF Tandem_Repeat 267915 268606 1077 + . . scaffold854 GLEAN mRNA 268616 268666 0.681082 - . ID=CGI_10022245; scaffold854 TRF Tandem_Repeat 268616 268666 84 + . . scaffold854 GLEAN mRNA 317995 318048 0.813824 + . ID=CGI_10022247; scaffold854 TRF Tandem_Repeat 317995 318048 92 + . . scaffold854 GLEAN mRNA 333422 333471 1 + . ID=CGI_10022249; scaffold854 TRF Tandem_Repeat 333422 333471 66 + . . scaffold854 GLEAN mRNA 333644 334556 1 + . ID=CGI_10022249; scaffold854 TRF Tandem_Repeat 333644 334556 1506 + . . scaffold854 GLEAN mRNA 355022 355316 0.574859 + . ID=CGI_10022251; scaffold854 TRF Tandem_Repeat 355022 355316 150 + . . scaffold854 GLEAN mRNA 355271 355702 0.574859 + . ID=CGI_10022251; scaffold854 TRF Tandem_Repeat 355271 355702 221 + . . scaffold854 GLEAN mRNA 355289 355733 0.574859 + . ID=CGI_10022251; scaffold854 TRF Tandem_Repeat 355289 355733 276 + . . scaffold854 GLEAN mRNA 355288 355733 0.574859 + . ID=CGI_10022251; scaffold854 TRF Tandem_Repeat 355288 355733 386 + . . scaffold854 GLEAN mRNA 355515 355623 0.574859 + . ID=CGI_10022251; scaffold854 TRF Tandem_Repeat 355515 355623 50 + . . scaffold854 GLEAN mRNA 355424 355727 0.574859 + . ID=CGI_10022251; scaffold854 TRF Tandem_Repeat 355424 355727 229 + . . scaffold854 GLEAN mRNA 367355 367408 0.574859 + . ID=CGI_10022251; scaffold854 TRF Tandem_Repeat 367355 367408 101 + . . scaffold854 GLEAN mRNA 370348 370594 0.574859 + . ID=CGI_10022251; scaffold854 TRF Tandem_Repeat 370348 370594 316 + . . scaffold854 GLEAN mRNA 400046 400083 0.849104 + . ID=CGI_10022252; scaffold854 TRF Tandem_Repeat 400046 400083 76 + . . scaffold854 GLEAN mRNA 411991 412015 0.849104 + . ID=CGI_10022252; scaffold854 TRF Tandem_Repeat 411991 412015 50 + . . scaffold854 GLEAN mRNA 416316 416361 0.849104 + . ID=CGI_10022252; scaffold854 TRF Tandem_Repeat 416316 416361 67 + . . scaffold854 GLEAN mRNA 416311 416364 0.849104 + . ID=CGI_10022252; scaffold854 TRF Tandem_Repeat 416311 416364 67 + . . scaffold854 GLEAN mRNA 416534 417611 0.849104 + . ID=CGI_10022252; scaffold854 TRF Tandem_Repeat 416534 417611 1820 + . . scaffold854 GLEAN mRNA 415651 416214 0.849104 + . ID=CGI_10022252; scaffold854 WUBlastX LINE_L1-Tx1 415651 416214 24 - . . scaffold854 GLEAN mRNA 428371 428598 0.849104 + . ID=CGI_10022252; scaffold854 TRF Tandem_Repeat 428371 428598 240 + . . scaffold854 GLEAN mRNA 428372 428610 0.849104 + . ID=CGI_10022252; scaffold854 TRF Tandem_Repeat 428372 428610 235 + . . scaffold854 GLEAN mRNA 429195 429454 0.849104 + . ID=CGI_10022252; scaffold854 TRF Tandem_Repeat 429195 429454 304 + . . scaffold854 GLEAN mRNA 429195 429454 0.849104 + . ID=CGI_10022252; scaffold854 TRF Tandem_Repeat 429195 429454 322 + . . scaffold854 GLEAN mRNA 429203 429456 0.849104 + . ID=CGI_10022252; scaffold854 TRF Tandem_Repeat 429203 429456 377 + . . scaffold854 GLEAN mRNA 430956 430992 0.849104 + . ID=CGI_10022252; scaffold854 TRF Tandem_Repeat 430956 430992 74 + . . scaffold854 GLEAN mRNA 450423 450836 0.849104 + . ID=CGI_10022252; scaffold854 WUBlastX LINE_RTE-X 450423 450836 119 - . . scaffold854 GLEAN mRNA 450297 450836 0.849104 + . ID=CGI_10022252; scaffold854 WUBlastX LINE_RTE-X 450297 450836 92 - . . scaffold854 GLEAN mRNA 459632 459669 0.999999 - . ID=CGI_10022253; scaffold854 TRF Tandem_Repeat 459632 459669 76 + . . scaffold854 GLEAN mRNA 476441 476490 0.999999 - . ID=CGI_10022253; scaffold854 TRF Tandem_Repeat 476441 476490 100 + . . scaffold854 GLEAN mRNA 498755 498781 0.585125 + . ID=CGI_10022255; scaffold854 TRF Tandem_Repeat 498755 498781 54 + . . scaffold854 GLEAN mRNA 510534 510586 0.999351 - . ID=CGI_10022256; scaffold854 TRF Tandem_Repeat 510534 510586 106 + . . scaffold854 GLEAN mRNA 510534 510586 1 + . ID=CGI_10022257; scaffold854 TRF Tandem_Repeat 510534 510586 106 + . . scaffold854 GLEAN mRNA 570701 570801 0.993533 - . ID=CGI_10022260; scaffold854 TRF Tandem_Repeat 570701 570801 130 + . . scaffold854 GLEAN mRNA 581488 581573 0.993533 - . ID=CGI_10022260; scaffold854 TRF Tandem_Repeat 581488 581573 54 + . . scaffold854 GLEAN mRNA 581497 581574 0.993533 - . ID=CGI_10022260; scaffold854 TRF Tandem_Repeat 581497 581574 81 + . . scaffold854 GLEAN mRNA 581488 581561 0.993533 - . ID=CGI_10022260; scaffold854 TRF Tandem_Repeat 581488 581561 62 + . . scaffold854 GLEAN mRNA 585629 585672 0.993533 - . ID=CGI_10022260; scaffold854 TRF Tandem_Repeat 585629 585672 79 + . . scaffold854 GLEAN mRNA 595470 595577 0.999735 + . ID=CGI_10022261; scaffold854 TRF Tandem_Repeat 595470 595577 153 + . . scaffold854 GLEAN mRNA 597132 597180 0.999735 + . ID=CGI_10022261; scaffold854 TRF Tandem_Repeat 597132 597180 98 + . . scaffold854 GLEAN mRNA 597182 597814 0.999735 + . ID=CGI_10022261; scaffold854 WUBlastX LINE_L1-Tx1 597182 597814 129 + . . scaffold854 GLEAN mRNA 597843 598088 0.999735 + . ID=CGI_10022261; scaffold854 WUBlastX LINE_L1-Tx1 597843 598088 81 + . . scaffold854 GLEAN mRNA 597843 598214 0.999735 + . ID=CGI_10022261; scaffold854 WUBlastX LINE_L1 597843 598214 20 + . . scaffold854 GLEAN mRNA 620128 620912 0.932456 + . ID=CGI_10022262; scaffold854 TRF Tandem_Repeat 620128 620912 1036 + . . scaffold854 GLEAN mRNA 615343 615735 0.932456 + . ID=CGI_10022262; scaffold854 WUBlastX LINE_L1-Tx1 615343 615735 144 + . . scaffold854 GLEAN mRNA 615007 615261 0.932456 + . ID=CGI_10022262; scaffold854 WUBlastX LINE_L1-Tx1 614278 615261 46 + . . scaffold854 GLEAN mRNA 703861 704424 0.21294 + . ID=CGI_10022264; scaffold854 WUBlastX LTR_Pao 703861 704424 173 + . . scaffold854 GLEAN mRNA 703378 704277 0.21294 + . ID=CGI_10022264; scaffold854 WUBlastX LTR_Pao 703378 704277 229 + . . scaffold854 GLEAN mRNA 703027 703824 0.21294 + . ID=CGI_10022264; scaffold854 WUBlastX LTR_Pao 703027 703824 44 + . . scaffold854 GLEAN mRNA 708495 708528 0.21294 + . ID=CGI_10022264; scaffold854 TRF Tandem_Repeat 708495 708528 59 + . . scaffold854 GLEAN mRNA 721675 721728 0.21294 + . ID=CGI_10022264; scaffold854 TRF Tandem_Repeat 721675 721728 108 + . . scaffold854 GLEAN mRNA 728817 728934 0.21294 + . ID=CGI_10022264; scaffold854 TRF Tandem_Repeat 728817 728934 155 + . . scaffold854 GLEAN mRNA 728817 728958 0.21294 + . ID=CGI_10022264; scaffold854 TRF Tandem_Repeat 728817 728958 90 + . . scaffold847 GLEAN mRNA 65237 65305 0.999451 - . ID=CGI_10022265; scaffold847 WUBlastX LTR_Gypsy 65237 65305 25 - . . scaffold847 GLEAN mRNA 65259 65522 0.999451 - . ID=CGI_10022265; scaffold847 WUBlastX LTR_Gypsy 65259 65522 69 - . . scaffold847 GLEAN mRNA 65295 65495 0.999451 - . ID=CGI_10022265; scaffold847 WUBlastX LTR_Gypsy 65295 65495 97 - . . scaffold847 GLEAN mRNA 81965 82043 0.999243 - . ID=CGI_10022267; scaffold847 TRF Tandem_Repeat 81965 82043 158 + . . scaffold847 GLEAN mRNA 239954 239991 0.702157 + . ID=CGI_10022269; scaffold847 TRF Tandem_Repeat 239954 239991 76 + . . scaffold847 GLEAN mRNA 239991 240027 0.702157 + . ID=CGI_10022269; scaffold847 TRF Tandem_Repeat 239991 240027 65 + . . scaffold847 GLEAN mRNA 244126 244164 0.702157 + . ID=CGI_10022269; scaffold847 TRF Tandem_Repeat 244126 244164 78 + . . scaffold847 GLEAN mRNA 249149 249188 0.702157 + . ID=CGI_10022269; scaffold847 TRF Tandem_Repeat 249149 249188 53 + . . scaffold847 GLEAN mRNA 249157 249191 0.702157 + . ID=CGI_10022269; scaffold847 TRF Tandem_Repeat 249157 249191 52 + . . scaffold847 GLEAN mRNA 281236 281631 0.998253 - . ID=CGI_10022270; scaffold847 WUBlastX LINE_RTE-X 281236 281631 161 - . . scaffold847 GLEAN mRNA 281798 282160 0.998253 - . ID=CGI_10022270; scaffold847 WUBlastX LINE_RTE-X 281798 282160 108 - . . scaffold847 GLEAN mRNA 281696 282052 0.998253 - . ID=CGI_10022270; scaffold847 WUBlastX LINE_RTE-X 281696 282052 102 - . . scaffold847 GLEAN mRNA 279310 280368 0.998253 - . ID=CGI_10022270; scaffold847 WUBlastX LTR_Pao 279310 280368 155 - . . scaffold847 GLEAN mRNA 281182 281667 0.998253 - . ID=CGI_10022270; scaffold847 WUBlastX LINE_RTE-X 281182 281667 151 - . . scaffold847 GLEAN mRNA 281693 282259 0.998253 - . ID=CGI_10022270; scaffold847 WUBlastX LINE_RTE-X 281693 282259 67 - . . scaffold847 GLEAN mRNA 282126 282344 0.998253 - . ID=CGI_10022270; scaffold847 WUBlastX LINE_RTE-X 282126 282344 64 - . . scaffold847 GLEAN mRNA 277741 280167 0.998253 - . ID=CGI_10022270; scaffold847 WUBlastX LTR_Pao 277741 280167 1935 - . . scaffold847 GLEAN mRNA 289368 289397 0.612962 - . ID=CGI_10022271; scaffold847 TRF Tandem_Repeat 289368 289397 60 + . . scaffold847 GLEAN mRNA 313010 313069 1 + . ID=CGI_10022272; scaffold847 TRF Tandem_Repeat 313010 313069 93 + . . scaffold847 GLEAN mRNA 349513 349845 0.999286 + . ID=CGI_10022273; scaffold847 TRF Tandem_Repeat 349513 349845 440 + . . scaffold847 GLEAN mRNA 353113 353771 0.999286 + . ID=CGI_10022273; scaffold847 TRF Tandem_Repeat 353113 353771 933 + . . scaffold847 GLEAN mRNA 378079 378131 0.999624 + . ID=CGI_10022274; scaffold847 TRF Tandem_Repeat 378079 378131 106 + . . scaffold847 GLEAN mRNA 409838 410159 0.526432 - . ID=CGI_10022277; scaffold847 TRF Tandem_Repeat 409838 410159 574 + . . scaffold847 GLEAN mRNA 436989 437846 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 436989 437846 97 - . . scaffold847 GLEAN mRNA 438743 439180 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 438743 439180 63 - . . scaffold847 GLEAN mRNA 436670 436882 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 436670 436882 58 - . . scaffold847 GLEAN mRNA 437364 437846 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 437364 437846 168 - . . scaffold847 GLEAN mRNA 439398 439457 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 439398 439457 20 - . . scaffold847 GLEAN mRNA 437219 437503 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 437219 437503 109 - . . scaffold847 GLEAN mRNA 437499 437846 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 437499 437846 210 - . . scaffold847 GLEAN mRNA 437852 438349 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 437852 438349 316 - . . scaffold847 GLEAN mRNA 438355 438774 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 438355 438774 50 - . . scaffold847 GLEAN mRNA 438743 439114 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 438743 439114 118 - . . scaffold847 GLEAN mRNA 438746 438952 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 438746 438952 131 - . . scaffold847 GLEAN mRNA 436649 436933 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 436649 436933 21 - . . scaffold847 GLEAN mRNA 511809 512111 0.74223 - . ID=CGI_10022280; scaffold847 WUBlastX LTR_DIRS 511809 512111 79 - . . scaffold847 GLEAN mRNA 509286 510176 0.74223 - . ID=CGI_10022280; scaffold847 WUBlastX LTR_DIRS 509286 510176 147 - . . scaffold847 GLEAN mRNA 511905 512156 0.74223 - . ID=CGI_10022280; scaffold847 WUBlastX LTR_DIRS 511905 512156 61 - . . scaffold847 GLEAN mRNA 509286 509549 0.74223 - . ID=CGI_10022280; scaffold847 WUBlastX LTR_DIRS 509286 509549 189 - . . scaffold847 GLEAN mRNA 510163 511344 0.74223 - . ID=CGI_10022280; scaffold847 WUBlastX LTR_DIRS 510163 511344 720 - . . scaffold847 GLEAN mRNA 511355 511729 0.74223 - . ID=CGI_10022280; scaffold847 WUBlastX LTR_DIRS 511355 511729 211 - . . scaffold847 GLEAN mRNA 511358 511894 0.74223 - . ID=CGI_10022280; scaffold847 WUBlastX LTR_DIRS 511358 511894 163 - . . scaffold847 GLEAN mRNA 520646 521950 0.999676 + . ID=CGI_10022281; scaffold847 WUBlastX LINE_L2 520646 521950 806 + . . scaffold847 GLEAN mRNA 520355 521947 0.999676 + . ID=CGI_10022281; scaffold847 WUBlastX LINE_L2 520355 521947 247 + . . scaffold847 GLEAN mRNA 554735 554792 0.999147 + . ID=CGI_10022282; scaffold847 TRF Tandem_Repeat 554735 554792 82 + . . scaffold847 GLEAN mRNA 554735 554792 0.999147 + . ID=CGI_10022282; scaffold847 TRF Tandem_Repeat 554735 554792 82 + . . scaffold847 GLEAN mRNA 554747 554792 0.999147 + . ID=CGI_10022282; scaffold847 TRF Tandem_Repeat 554747 554792 56 + . . scaffold847 GLEAN mRNA 598114 598150 0.840326 - . ID=CGI_10022283; scaffold847 TRF Tandem_Repeat 598114 598150 65 + . . scaffold847 GLEAN mRNA 600634 600710 0.840326 - . ID=CGI_10022283; scaffold847 TRF Tandem_Repeat 600634 600710 145 + . . scaffold847 GLEAN mRNA 602938 602973 0.840326 - . ID=CGI_10022283; scaffold847 TRF Tandem_Repeat 602938 602973 63 + . . scaffold847 GLEAN mRNA 597422 598033 0.840326 - . ID=CGI_10022283; scaffold847 WUBlastX LTR_Gypsy 597422 598033 203 - . . scaffold847 GLEAN mRNA 598299 598664 0.840326 - . ID=CGI_10022283; scaffold847 WUBlastX LTR_Gypsy 598299 598664 57 - . . scaffold847 GLEAN mRNA 597366 597509 0.840326 - . ID=CGI_10022283; scaffold847 WUBlastX LTR_Gypsy 597366 597509 41 - . . scaffold847 GLEAN mRNA 598536 598691 0.840326 - . ID=CGI_10022283; scaffold847 WUBlastX LTR_Gypsy 598536 598691 21 - . . scaffold847 GLEAN mRNA 597271 597369 0.840326 - . ID=CGI_10022283; scaffold847 WUBlastX LTR_Gypsy 597271 597369 38 - . . scaffold847 GLEAN mRNA 598031 598108 0.840326 - . ID=CGI_10022283; scaffold847 WUBlastX LTR_Gypsy 598031 598108 28 - . . scaffold847 GLEAN mRNA 597713 598096 0.840326 - . ID=CGI_10022283; scaffold847 WUBlastX LTR_Gypsy 597713 598096 128 - . . scaffold847 GLEAN mRNA 597521 598033 0.840326 - . ID=CGI_10022283; scaffold847 WUBlastX LTR_Gypsy 597521 598033 206 - . . scaffold847 GLEAN mRNA 597710 598033 0.840326 - . ID=CGI_10022283; scaffold847 WUBlastX LTR_Gypsy 597710 598033 266 - . . scaffold847 GLEAN mRNA 617030 617086 0.417471 - . ID=CGI_10022284; scaffold847 TRF Tandem_Repeat 617030 617086 114 + . . scaffold847 GLEAN mRNA 707407 707559 0.916724 - . ID=CGI_10022288; scaffold847 WUBlastX LINE_L1-Tx1 707407 707559 51 - . . scaffold847 GLEAN mRNA 706056 706475 0.916724 - . ID=CGI_10022288; scaffold847 WUBlastX LINE_L1-Tx1 706056 706475 116 - . . scaffold847 GLEAN mRNA 707577 707807 0.916724 - . ID=CGI_10022288; scaffold847 WUBlastX LINE_L1-Tx1 707577 707807 89 - . . scaffold847 GLEAN mRNA 705725 706129 0.916724 - . ID=CGI_10022288; scaffold847 WUBlastX LINE_L1 705725 706129 100 - . . scaffold847 GLEAN mRNA 706496 707272 0.916724 - . ID=CGI_10022288; scaffold847 WUBlastX LINE_L1 706496 707272 78 - . . scaffold847 GLEAN mRNA 705578 706153 0.916724 - . ID=CGI_10022288; scaffold847 WUBlastX LINE_L1-Tx1 705578 706153 30 - . . scaffold847 GLEAN mRNA 706104 706454 0.916724 - . ID=CGI_10022288; scaffold847 WUBlastX LINE_L1 706104 706454 157 - . . scaffold847 GLEAN mRNA 730932 731397 0.983324 + . ID=CGI_10022291; scaffold847 TRF Tandem_Repeat 730932 731397 717 + . . scaffold6 GLEAN mRNA 123654 123704 0.978215 - . ID=CGI_10022297; scaffold6 TRF Tandem_Repeat 123654 123704 102 + . . scaffold6 GLEAN mRNA 126541 127434 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LTR_Pao 126541 127434 482 + . . scaffold6 GLEAN mRNA 128628 128786 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LTR_Pao 128628 128786 47 + . . scaffold6 GLEAN mRNA 129567 130256 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LTR_Pao 129567 130256 241 + . . scaffold6 GLEAN mRNA 126238 127434 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LTR_Pao 126238 127434 474 + . . scaffold6 GLEAN mRNA 121744 122133 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LINE_Penelope 121744 122133 24 + . . scaffold6 GLEAN mRNA 125742 126248 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LTR_Pao 125742 126248 37 + . . scaffold6 GLEAN mRNA 121556 121660 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LINE_Penelope 121556 121660 29 + . . scaffold6 GLEAN mRNA 129547 129606 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LTR_Pao 129547 129606 20 + . . scaffold6 GLEAN mRNA 129672 130253 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LTR_Pao 129672 130253 467 + . . scaffold6 GLEAN mRNA 128783 129556 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LTR_Pao 128783 129556 549 + . . scaffold6 GLEAN mRNA 127458 128726 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LTR_Pao 127458 128726 998 + . . scaffold6 GLEAN mRNA 130255 130353 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LTR_Pao 130255 130353 65 + . . scaffold6 GLEAN mRNA 135458 135504 0.978215 - . ID=CGI_10022297; scaffold6 TRF Tandem_Repeat 135458 135504 94 + . . scaffold6 GLEAN mRNA 139853 139877 0.978215 - . ID=CGI_10022297; scaffold6 TRF Tandem_Repeat 139853 139877 50 + . . scaffold6 GLEAN mRNA 140694 140749 0.978215 - . ID=CGI_10022297; scaffold6 TRF Tandem_Repeat 140694 140749 112 + . . scaffold6 GLEAN mRNA 159779 159914 0.354496 - . ID=CGI_10022298; scaffold6 TRF Tandem_Repeat 159779 159914 103 + . . scaffold6 GLEAN mRNA 160253 160292 0.354496 - . ID=CGI_10022298; scaffold6 TRF Tandem_Repeat 160253 160292 80 + . . scaffold6 GLEAN mRNA 172472 172541 0.9974 - . ID=CGI_10022299; scaffold6 TRF Tandem_Repeat 172472 172541 122 + . . scaffold6 GLEAN mRNA 189905 189940 0.384347 - . ID=CGI_10022300; scaffold6 TRF Tandem_Repeat 189905 189940 72 + . . scaffold6 GLEAN mRNA 194063 194113 0.384347 - . ID=CGI_10022300; scaffold6 TRF Tandem_Repeat 194063 194113 102 + . . scaffold6 GLEAN mRNA 195960 195997 0.384347 - . ID=CGI_10022300; scaffold6 TRF Tandem_Repeat 195960 195997 53 + . . scaffold6 GLEAN mRNA 187315 188343 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1 187315 188343 365 + . . scaffold6 GLEAN mRNA 189389 189721 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 189389 189721 53 + . . scaffold6 GLEAN mRNA 186872 187324 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1 186872 187324 101 + . . scaffold6 GLEAN mRNA 188393 189628 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 188393 189628 134 + . . scaffold6 GLEAN mRNA 187609 188388 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 187609 188388 597 + . . scaffold6 GLEAN mRNA 188411 189070 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 188411 189070 200 + . . scaffold6 GLEAN mRNA 186953 187312 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 186953 187312 189 + . . scaffold6 GLEAN mRNA 199540 200214 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 199540 200214 148 + . . scaffold6 GLEAN mRNA 199292 199483 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 199292 199483 31 + . . scaffold6 GLEAN mRNA 197556 197735 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 197556 197735 66 + . . scaffold6 GLEAN mRNA 197725 198762 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 197725 198762 251 + . . scaffold6 GLEAN mRNA 198954 199322 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 198954 199322 74 + . . scaffold6 GLEAN mRNA 199415 199501 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 199415 199501 23 + . . scaffold6 GLEAN mRNA 198409 198924 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 198409 198924 155 + . . scaffold6 GLEAN mRNA 198936 199016 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 198936 199016 32 + . . scaffold6 GLEAN mRNA 199909 200280 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1-Tx1 199909 200280 21 + . . scaffold6 GLEAN mRNA 217621 217927 0.999944 - . ID=CGI_10022301; scaffold6 TRF Tandem_Repeat 217621 217927 436 + . . scaffold6 GLEAN mRNA 243743 243850 0.993546 - . ID=CGI_10022303; scaffold6 WUBlastX LINE_Jockey 243743 243850 24 - . . scaffold6 GLEAN mRNA 243911 243991 0.993546 - . ID=CGI_10022303; scaffold6 WUBlastX LINE_LOA 243911 243991 25 - . . scaffold6 GLEAN mRNA 244034 244117 0.993546 - . ID=CGI_10022303; scaffold6 WUBlastX LINE_RTE-BovB 244034 244117 23 - . . scaffold6 GLEAN mRNA 285500 286292 1 + . ID=CGI_10022309; scaffold6 TRF Tandem_Repeat 285500 286292 1155 + . . scaffold6 GLEAN mRNA 302131 302651 0.985622 - . ID=CGI_10022310; scaffold6 TRF Tandem_Repeat 302131 302651 641 + . . scaffold6 GLEAN mRNA 314556 314858 0.985622 - . ID=CGI_10022310; scaffold6 TRF Tandem_Repeat 314556 314858 370 + . . scaffold6 GLEAN mRNA 328056 328090 0.999609 - . ID=CGI_10022311; scaffold6 TRF Tandem_Repeat 328056 328090 54 + . . scaffold6 GLEAN mRNA 328068 328101 0.999609 - . ID=CGI_10022311; scaffold6 TRF Tandem_Repeat 328068 328101 50 + . . scaffold6 GLEAN mRNA 335035 335079 0.999609 - . ID=CGI_10022311; scaffold6 TRF Tandem_Repeat 335035 335079 72 + . . scaffold6 GLEAN mRNA 328056 328090 1 + . ID=CGI_10022312; scaffold6 TRF Tandem_Repeat 328056 328090 54 + . . scaffold6 GLEAN mRNA 328068 328101 1 + . ID=CGI_10022312; scaffold6 TRF Tandem_Repeat 328068 328101 50 + . . scaffold6 GLEAN mRNA 376255 376361 1 + . ID=CGI_10022315; scaffold6 TRF Tandem_Repeat 376255 376361 196 + . . scaffold6 GLEAN mRNA 381359 382269 1 + . ID=CGI_10022315; scaffold6 TRF Tandem_Repeat 381359 382269 900 + . . scaffold6 GLEAN mRNA 419363 419858 0.999676 + . ID=CGI_10022318; scaffold6 TRF Tandem_Repeat 419363 419858 574 + . . scaffold6 GLEAN mRNA 419354 419858 0.999676 + . ID=CGI_10022318; scaffold6 TRF Tandem_Repeat 419354 419858 659 + . . scaffold6 GLEAN mRNA 484712 484780 0.662764 + . ID=CGI_10022322; scaffold6 TRF Tandem_Repeat 484712 484780 138 + . . scaffold6 GLEAN mRNA 486028 486518 0.662764 + . ID=CGI_10022322; scaffold6 TRF Tandem_Repeat 486028 486518 712 + . . scaffold6 GLEAN mRNA 486028 487102 0.662764 + . ID=CGI_10022322; scaffold6 TRF Tandem_Repeat 486028 487102 1296 + . . scaffold6 GLEAN mRNA 486530 486888 0.662764 + . ID=CGI_10022322; scaffold6 TRF Tandem_Repeat 486530 486888 531 + . . scaffold6 GLEAN mRNA 493174 493762 0.662764 + . ID=CGI_10022322; scaffold6 TRF Tandem_Repeat 493174 493762 764 + . . scaffold6 GLEAN mRNA 495132 495203 0.662764 + . ID=CGI_10022322; scaffold6 TRF Tandem_Repeat 495132 495203 112 + . . scaffold6 GLEAN mRNA 497500 497530 0.662764 + . ID=CGI_10022322; scaffold6 TRF Tandem_Repeat 497500 497530 62 + . . scaffold6 GLEAN mRNA 503386 503948 0.738188 - . ID=CGI_10022323; scaffold6 TRF Tandem_Repeat 503386 503948 341 + . . scaffold6 GLEAN mRNA 503362 504320 0.738188 - . ID=CGI_10022323; scaffold6 TRF Tandem_Repeat 503362 504320 467 + . . scaffold6 GLEAN mRNA 503962 504239 0.738188 - . ID=CGI_10022323; scaffold6 TRF Tandem_Repeat 503962 504239 142 + . . scaffold6 GLEAN mRNA 510366 510876 0.738188 - . ID=CGI_10022323; scaffold6 TRF Tandem_Repeat 510366 510876 303 + . . scaffold6 GLEAN mRNA 510351 511147 0.738188 - . ID=CGI_10022323; scaffold6 TRF Tandem_Repeat 510351 511147 370 + . . scaffold6 GLEAN mRNA 510365 511132 0.738188 - . ID=CGI_10022323; scaffold6 TRF Tandem_Repeat 510365 511132 535 + . . scaffold6 GLEAN mRNA 510903 511147 0.738188 - . ID=CGI_10022323; scaffold6 TRF Tandem_Repeat 510903 511147 174 + . . scaffold6 GLEAN mRNA 510672 511225 0.738188 - . ID=CGI_10022323; scaffold6 TRF Tandem_Repeat 510672 511225 391 + . . scaffold6 GLEAN mRNA 510960 511225 0.738188 - . ID=CGI_10022323; scaffold6 TRF Tandem_Repeat 510960 511225 132 + . . scaffold6 GLEAN mRNA 529851 529925 0.768138 - . ID=CGI_10022324; scaffold6 TRF Tandem_Repeat 529851 529925 107 + . . scaffold6 GLEAN mRNA 529950 530506 0.768138 - . ID=CGI_10022324; scaffold6 TRF Tandem_Repeat 529950 530506 639 + . . scaffold6 GLEAN mRNA 529950 530537 0.768138 - . ID=CGI_10022324; scaffold6 TRF Tandem_Repeat 529950 530537 826 + . . scaffold6 GLEAN mRNA 529950 530506 0.768138 - . ID=CGI_10022324; scaffold6 TRF Tandem_Repeat 529950 530506 981 + . . scaffold6 GLEAN mRNA 543173 543291 0.768138 - . ID=CGI_10022324; scaffold6 TRF Tandem_Repeat 543173 543291 211 + . . scaffold6 GLEAN mRNA 543428 543499 0.768138 - . ID=CGI_10022324; scaffold6 TRF Tandem_Repeat 543428 543499 117 + . . scaffold6 GLEAN mRNA 582182 582228 0.298144 - . ID=CGI_10022327; scaffold6 TRF Tandem_Repeat 582182 582228 55 + . . scaffold6 GLEAN mRNA 582475 582654 0.298144 - . ID=CGI_10022327; scaffold6 TRF Tandem_Repeat 582475 582654 100 + . . scaffold6 GLEAN mRNA 582503 582690 0.298144 - . ID=CGI_10022327; scaffold6 TRF Tandem_Repeat 582503 582690 156 + . . scaffold6 GLEAN mRNA 605111 606113 0.854712 - . ID=CGI_10022329; scaffold6 TRF Tandem_Repeat 605111 606113 1555 + . . scaffold6 GLEAN mRNA 610558 610582 0.854712 - . ID=CGI_10022329; scaffold6 TRF Tandem_Repeat 610558 610582 50 + . . scaffold6 GLEAN mRNA 611426 611563 0.854712 - . ID=CGI_10022329; scaffold6 WUBlastX DNA_Harbinger 611426 611563 89 - . . scaffold6 GLEAN mRNA 611426 611722 0.854712 - . ID=CGI_10022329; scaffold6 WUBlastX DNA_Harbinger 611426 611722 67 - . . scaffold6 GLEAN mRNA 613618 613668 0.999953 - . ID=CGI_10022330; scaffold6 TRF Tandem_Repeat 613618 613668 77 + . . scaffold6 GLEAN mRNA 613607 613661 0.999953 - . ID=CGI_10022330; scaffold6 TRF Tandem_Repeat 613607 613661 92 + . . scaffold6 GLEAN mRNA 613610 613667 0.999953 - . ID=CGI_10022330; scaffold6 TRF Tandem_Repeat 613610 613667 55 + . . scaffold6 GLEAN mRNA 613670 613783 0.999953 - . ID=CGI_10022330; scaffold6 WUBlastX DNA_Sola 613670 613783 32 - . . scaffold6 GLEAN mRNA 613747 615075 0.999953 - . ID=CGI_10022330; scaffold6 WUBlastX DNA_Sola 613747 615075 614 - . . scaffold6 GLEAN mRNA 618746 618796 0.999953 - . ID=CGI_10022330; scaffold6 WUBlastX DNA_Sola 618746 619159 51 - . . scaffold6 GLEAN mRNA 613721 613783 0.999953 - . ID=CGI_10022330; scaffold6 WUBlastX DNA_Sola 613721 613783 44 - . . scaffold6 GLEAN mRNA 673294 673500 1 + . ID=CGI_10022331; scaffold6 WUBlastX LINE_CR1 673294 673500 72 - . . scaffold6 GLEAN mRNA 673294 673617 1 + . ID=CGI_10022331; scaffold6 WUBlastX LINE_CR1-L2 673294 673617 59 - . . scaffold6 GLEAN mRNA 672558 673292 1 + . ID=CGI_10022331; scaffold6 WUBlastX LINE_L2 672558 673292 535 - . . scaffold6 GLEAN mRNA 673318 673728 1 + . ID=CGI_10022331; scaffold6 WUBlastX LINE_CR1-L2 673318 673728 54 - . . scaffold6 GLEAN mRNA 671555 672604 1 + . ID=CGI_10022331; scaffold6 WUBlastX LINE_L2 671555 672604 463 - . . scaffold6 GLEAN mRNA 695516 695546 0.235103 + . ID=CGI_10022333; scaffold6 TRF Tandem_Repeat 695516 695546 62 + . . scaffold6 GLEAN mRNA 697692 697757 0.235103 + . ID=CGI_10022333; scaffold6 TRF Tandem_Repeat 697692 697757 123 + . . scaffold6 GLEAN mRNA 703263 703299 0.270237 + . ID=CGI_10022334; scaffold6 TRF Tandem_Repeat 703263 703299 74 + . . scaffold6 GLEAN mRNA 703328 703391 0.270237 + . ID=CGI_10022334; scaffold6 TRF Tandem_Repeat 703328 703391 119 + . . scaffold6 GLEAN mRNA 703407 703607 0.270237 + . ID=CGI_10022334; scaffold6 WUBlastX DNA_Harbinger 703407 703607 78 + . . scaffold6 GLEAN mRNA 701998 702150 0.270237 + . ID=CGI_10022334; scaffold6 WUBlastX DNA_Harbinger 701998 702150 51 + . . scaffold6 GLEAN mRNA 706691 706756 0.270237 + . ID=CGI_10022334; scaffold6 TRF Tandem_Repeat 706691 706756 116 + . . scaffold6 GLEAN mRNA 706692 706753 0.270237 + . ID=CGI_10022334; scaffold6 TRF Tandem_Repeat 706692 706753 72 + . . scaffold6 GLEAN mRNA 714849 714950 0.270237 + . ID=CGI_10022334; scaffold6 WUBlastX DNA_IS4EU 714849 714950 58 - . . scaffold6 GLEAN mRNA 714695 714838 0.270237 + . ID=CGI_10022334; scaffold6 WUBlastX DNA_IS4EU 714695 714838 51 - . . scaffold6 GLEAN mRNA 728937 728984 0.270237 + . ID=CGI_10022334; scaffold6 TRF Tandem_Repeat 728937 728984 96 + . . scaffold6 GLEAN mRNA 733727 733783 0.270237 + . ID=CGI_10022334; scaffold6 TRF Tandem_Repeat 733727 733783 114 + . . scaffold6 GLEAN mRNA 723687 723902 0.270237 + . ID=CGI_10022334; scaffold6 WUBlastX DNA_hAT-Tip100 723687 723902 67 + . . scaffold6 GLEAN mRNA 721132 722031 0.270237 + . ID=CGI_10022334; scaffold6 WUBlastX DNA_hAT-Tip100 721132 722031 282 + . . scaffold6 GLEAN mRNA 722186 722314 0.270237 + . ID=CGI_10022334; scaffold6 WUBlastX DNA_hAT-Tip100 722186 722314 57 + . . scaffold6 GLEAN mRNA 723627 723869 0.270237 + . ID=CGI_10022334; scaffold6 WUBlastX DNA_hAT-Tip100 723627 723869 67 + . . scaffold6 GLEAN mRNA 723394 723519 0.270237 + . ID=CGI_10022334; scaffold6 WUBlastX DNA_hAT 723394 723519 58 + . . scaffold6 GLEAN mRNA 720757 721296 0.270237 + . ID=CGI_10022334; scaffold6 WUBlastX DNA_hAT-Tip100 720757 721296 43 + . . scaffold1710 GLEAN mRNA 73914 73959 0.877603 + . ID=CGI_10022336; scaffold1710 TRF Tandem_Repeat 73914 73959 92 + . . scaffold1710 GLEAN mRNA 96011 96066 0.706307 + . ID=CGI_10022338; scaffold1710 TRF Tandem_Repeat 96011 96066 51 + . . scaffold1710 GLEAN mRNA 136229 136336 0.651135 - . ID=CGI_10022342; scaffold1710 WUBlastX LINE_L1-Tx1 136229 136336 24 - . . scaffold1710 GLEAN mRNA 136330 136929 0.651135 - . ID=CGI_10022342; scaffold1710 WUBlastX LINE_L1-Tx1 136330 136929 297 - . . scaffold1710 GLEAN mRNA 142789 143387 1 - . ID=CGI_10022343; scaffold1710 TRF Tandem_Repeat 142789 143387 733 + . . scaffold1710 GLEAN mRNA 145010 145063 1 - . ID=CGI_10022343; scaffold1710 TRF Tandem_Repeat 145010 145063 108 + . . scaffold1710 GLEAN mRNA 145061 145099 1 - . ID=CGI_10022343; scaffold1710 TRF Tandem_Repeat 145061 145099 78 + . . scaffold1710 GLEAN mRNA 145202 145248 1 - . ID=CGI_10022343; scaffold1710 TRF Tandem_Repeat 145202 145248 87 + . . scaffold1710 GLEAN mRNA 145246 145281 1 - . ID=CGI_10022343; scaffold1710 TRF Tandem_Repeat 145246 145281 72 + . . scaffold1710 GLEAN mRNA 149725 149809 1 - . ID=CGI_10022343; scaffold1710 TRF Tandem_Repeat 149725 149809 120 + . . scaffold1710 GLEAN mRNA 158810 158992 0.62941 - . ID=CGI_10022344; scaffold1710 TRF Tandem_Repeat 158810 158992 176 + . . scaffold1710 GLEAN mRNA 161512 161543 0.62941 - . ID=CGI_10022344; scaffold1710 TRF Tandem_Repeat 161512 161543 64 + . . scaffold1710 GLEAN mRNA 216207 216689 1 - . ID=CGI_10022347; scaffold1710 WUBlastX LINE_RTE-X 216207 216689 82 - . . scaffold1710 GLEAN mRNA 216207 216812 1 - . ID=CGI_10022347; scaffold1710 WUBlastX LINE_RTE-X 216207 216812 24 - . . scaffold1710 GLEAN mRNA 227253 227502 0.595987 + . ID=CGI_10022348; scaffold1710 TRF Tandem_Repeat 227253 227502 215 + . . scaffold1710 GLEAN mRNA 229472 229511 0.595987 + . ID=CGI_10022348; scaffold1710 TRF Tandem_Repeat 229472 229511 53 + . . scaffold1710 GLEAN mRNA 229481 229523 0.595987 + . ID=CGI_10022348; scaffold1710 TRF Tandem_Repeat 229481 229523 50 + . . scaffold1710 GLEAN mRNA 233736 233782 0.595987 + . ID=CGI_10022348; scaffold1710 TRF Tandem_Repeat 233736 233782 51 + . . scaffold1710 GLEAN mRNA 239743 242075 0.595987 + . ID=CGI_10022348; scaffold1710 TRF Tandem_Repeat 239743 242075 4016 + . . scaffold1710 GLEAN mRNA 243583 244041 0.595987 + . ID=CGI_10022348; scaffold1710 TRF Tandem_Repeat 243583 244041 792 + . . scaffold1710 GLEAN mRNA 244945 245068 0.595987 + . ID=CGI_10022348; scaffold1710 TRF Tandem_Repeat 244945 245068 194 + . . scaffold1710 GLEAN mRNA 258912 258963 0.999676 + . ID=CGI_10022349; scaffold1710 TRF Tandem_Repeat 258912 258963 86 + . . scaffold1710 GLEAN mRNA 259051 259087 0.999676 + . ID=CGI_10022349; scaffold1710 TRF Tandem_Repeat 259051 259087 60 + . . scaffold1710 GLEAN mRNA 260982 261017 0.999676 + . ID=CGI_10022349; scaffold1710 TRF Tandem_Repeat 260982 261017 63 + . . scaffold1710 GLEAN mRNA 266234 266484 0.999676 + . ID=CGI_10022349; scaffold1710 TRF Tandem_Repeat 266234 266484 261 + . . scaffold1710 GLEAN mRNA 277530 277579 0.933682 - . ID=CGI_10022351; scaffold1710 TRF Tandem_Repeat 277530 277579 100 + . . scaffold1710 GLEAN mRNA 278700 278725 0.933682 - . ID=CGI_10022351; scaffold1710 TRF Tandem_Repeat 278700 278725 52 + . . scaffold1710 GLEAN mRNA 335372 336128 0.996244 + . ID=CGI_10022355; scaffold1710 TRF Tandem_Repeat 335372 336128 1051 + . . scaffold1710 GLEAN mRNA 364984 365028 0.996244 + . ID=CGI_10022355; scaffold1710 TRF Tandem_Repeat 364984 365028 90 + . . scaffold1710 GLEAN mRNA 365128 365241 0.996244 + . ID=CGI_10022355; scaffold1710 TRF Tandem_Repeat 365128 365241 189 + . . scaffold1710 GLEAN mRNA 383472 383512 0.986651 - . ID=CGI_10022361; scaffold1710 TRF Tandem_Repeat 383472 383512 82 + . . scaffold1710 GLEAN mRNA 507045 507090 0.997318 + . ID=CGI_10022368; scaffold1710 TRF Tandem_Repeat 507045 507090 83 + . . scaffold1710 GLEAN mRNA 517638 517685 0.997318 + . ID=CGI_10022368; scaffold1710 TRF Tandem_Repeat 517638 517685 87 + . . scaffold1710 GLEAN mRNA 526533 528114 0.997318 + . ID=CGI_10022368; scaffold1710 TRF Tandem_Repeat 526533 528114 2273 + . . scaffold1710 GLEAN mRNA 529058 529204 0.997318 + . ID=CGI_10022368; scaffold1710 TRF Tandem_Repeat 529058 529204 73 + . . scaffold1710 GLEAN mRNA 529120 529249 0.997318 + . ID=CGI_10022368; scaffold1710 TRF Tandem_Repeat 529120 529249 93 + . . scaffold1710 GLEAN mRNA 611596 611638 0.95382 + . ID=CGI_10022372; scaffold1710 TRF Tandem_Repeat 611596 611638 59 + . . scaffold1710 GLEAN mRNA 625600 625630 0.95382 + . ID=CGI_10022372; scaffold1710 TRF Tandem_Repeat 625600 625630 62 + . . scaffold1710 GLEAN mRNA 647420 647478 0.95382 + . ID=CGI_10022372; scaffold1710 TRF Tandem_Repeat 647420 647478 109 + . . scaffold1710 GLEAN mRNA 649295 649355 0.95382 + . ID=CGI_10022372; scaffold1710 TRF Tandem_Repeat 649295 649355 122 + . . scaffold1710 GLEAN mRNA 695524 695555 0.95382 + . ID=CGI_10022372; scaffold1710 TRF Tandem_Repeat 695524 695555 64 + . . scaffold1710 GLEAN mRNA 716752 716857 0.587067 - . ID=CGI_10022373; scaffold1710 TRF Tandem_Repeat 716752 716857 194 + . . scaffold1710 GLEAN mRNA 716855 716941 0.587067 - . ID=CGI_10022373; scaffold1710 TRF Tandem_Repeat 716855 716941 174 + . . scaffold1710 GLEAN mRNA 719013 719351 0.587067 - . ID=CGI_10022373; scaffold1710 TRF Tandem_Repeat 719013 719351 309 + . . scaffold1710 GLEAN mRNA 719004 719450 0.587067 - . ID=CGI_10022373; scaffold1710 TRF Tandem_Repeat 719004 719450 352 + . . scaffold1710 GLEAN mRNA 719019 719450 0.587067 - . ID=CGI_10022373; scaffold1710 TRF Tandem_Repeat 719019 719450 376 + . . scaffold1710 GLEAN mRNA 719283 719380 0.587067 - . ID=CGI_10022373; scaffold1710 TRF Tandem_Repeat 719283 719380 99 + . . scaffold1710 GLEAN mRNA 719013 719450 0.587067 - . ID=CGI_10022373; scaffold1710 TRF Tandem_Repeat 719013 719450 234 + . . scaffold1710 GLEAN mRNA 719404 719462 0.587067 - . ID=CGI_10022373; scaffold1710 TRF Tandem_Repeat 719404 719462 61 + . . scaffold1710 GLEAN mRNA 723110 723217 0.587067 - . ID=CGI_10022373; scaffold1710 WUBlastX LINE_R2-Hero 723110 723217 72 + . . scaffold1710 GLEAN mRNA 723229 723381 0.587067 - . ID=CGI_10022373; scaffold1710 WUBlastX LINE_R2-Hero 723229 723381 45 + . . scaffold541 GLEAN mRNA 54946 54979 0.650911 - . ID=CGI_10022375; scaffold541 TRF Tandem_Repeat 54946 54979 68 + . . scaffold541 GLEAN mRNA 62079 62138 0.650911 - . ID=CGI_10022375; scaffold541 WUBlastX LTR_Gypsy 62079 62138 21 + . . scaffold541 GLEAN mRNA 62329 62538 0.650911 - . ID=CGI_10022375; scaffold541 WUBlastX LTR_Gypsy 62329 62538 84 + . . scaffold541 GLEAN mRNA 62362 62619 0.650911 - . ID=CGI_10022375; scaffold541 WUBlastX LTR_Gypsy 62362 62619 128 + . . scaffold541 GLEAN mRNA 62287 62532 0.650911 - . ID=CGI_10022375; scaffold541 WUBlastX LTR_Gypsy 62287 62532 69 + . . scaffold541 GLEAN mRNA 62362 62544 0.650911 - . ID=CGI_10022375; scaffold541 WUBlastX LTR_Gypsy-Cigr 62362 62544 179 + . . scaffold541 GLEAN mRNA 62796 62882 0.650911 - . ID=CGI_10022375; scaffold541 WUBlastX LTR_Gypsy 62796 62882 21 + . . scaffold541 GLEAN mRNA 76667 76821 1 - . ID=CGI_10022376; scaffold541 TRF Tandem_Repeat 76667 76821 107 + . . scaffold541 GLEAN mRNA 77330 77419 1 - . ID=CGI_10022376; scaffold541 TRF Tandem_Repeat 77330 77419 108 + . . scaffold541 GLEAN mRNA 77904 77983 1 - . ID=CGI_10022376; scaffold541 TRF Tandem_Repeat 77904 77983 151 + . . scaffold541 GLEAN mRNA 106224 106556 0.777728 + . ID=CGI_10022378; scaffold541 WUBlastX LINE_L2 106224 106556 53 + . . scaffold541 GLEAN mRNA 106191 106679 0.777728 + . ID=CGI_10022378; scaffold541 WUBlastX LINE_L1 106191 106679 49 + . . scaffold541 GLEAN mRNA 106155 106574 0.777728 + . ID=CGI_10022378; scaffold541 WUBlastX LINE_L1 106155 106574 50 + . . scaffold541 GLEAN mRNA 106557 107192 0.777728 + . ID=CGI_10022378; scaffold541 WUBlastX RC_Helitron 106557 107243 41 + . . scaffold541 GLEAN mRNA 106056 106652 0.777728 + . ID=CGI_10022378; scaffold541 WUBlastX LINE_L1 106011 106652 43 + . . scaffold541 GLEAN mRNA 243428 243457 0.99935 - . ID=CGI_10022380; scaffold541 TRF Tandem_Repeat 243428 243457 60 + . . scaffold541 GLEAN mRNA 249145 249302 0.99935 - . ID=CGI_10022380; scaffold541 TRF Tandem_Repeat 249145 249302 253 + . . scaffold541 GLEAN mRNA 252734 252891 0.99935 - . ID=CGI_10022380; scaffold541 TRF Tandem_Repeat 252734 252891 253 + . . scaffold541 GLEAN mRNA 249145 249302 0.609201 + . ID=CGI_10022381; scaffold541 TRF Tandem_Repeat 249145 249302 253 + . . scaffold541 GLEAN mRNA 252734 252891 0.609201 + . ID=CGI_10022381; scaffold541 TRF Tandem_Repeat 252734 252891 253 + . . scaffold541 GLEAN mRNA 259136 259832 0.609201 + . ID=CGI_10022381; scaffold541 TRF Tandem_Repeat 259136 259832 1041 + . . scaffold541 GLEAN mRNA 259136 259832 0.841405 - . ID=CGI_10022382; scaffold541 TRF Tandem_Repeat 259136 259832 1041 + . . scaffold541 GLEAN mRNA 285445 285511 1 + . ID=CGI_10022385; scaffold541 TRF Tandem_Repeat 285445 285511 53 + . . scaffold541 GLEAN mRNA 285915 285974 1 + . ID=CGI_10022385; scaffold541 TRF Tandem_Repeat 285915 285974 120 + . . scaffold541 GLEAN mRNA 311515 311616 0.969372 - . ID=CGI_10022389; scaffold541 TRF Tandem_Repeat 311515 311616 123 + . . scaffold541 GLEAN mRNA 323673 324046 0.937895 + . ID=CGI_10022390; scaffold541 TRF Tandem_Repeat 323673 324046 509 + . . scaffold541 GLEAN mRNA 384707 385629 0.761514 - . ID=CGI_10022391; scaffold541 TRF Tandem_Repeat 384707 385629 1276 + . . scaffold541 GLEAN mRNA 396295 396367 0.544824 + . ID=CGI_10022393; scaffold541 TRF Tandem_Repeat 396295 396367 84 + . . scaffold541 GLEAN mRNA 396302 396351 0.544824 + . ID=CGI_10022393; scaffold541 TRF Tandem_Repeat 396302 396351 54 + . . scaffold541 GLEAN mRNA 471919 471964 0.782383 + . ID=CGI_10022394; scaffold541 TRF Tandem_Repeat 471919 471964 74 + . . scaffold541 GLEAN mRNA 472750 472810 0.782383 + . ID=CGI_10022394; scaffold541 TRF Tandem_Repeat 472750 472810 122 + . . scaffold541 GLEAN mRNA 473561 473627 0.782383 + . ID=CGI_10022394; scaffold541 TRF Tandem_Repeat 473561 473627 134 + . . scaffold541 GLEAN mRNA 473963 474023 0.782383 + . ID=CGI_10022394; scaffold541 TRF Tandem_Repeat 473963 474023 113 + . . scaffold541 GLEAN mRNA 469014 471281 0.782383 + . ID=CGI_10022394; scaffold541 WUBlastX LINE_RTE-X 469014 471281 384 + . . scaffold541 GLEAN mRNA 468414 471029 0.782383 + . ID=CGI_10022394; scaffold541 WUBlastX LINE_Proto2 468414 471029 276 + . . scaffold541 GLEAN mRNA 468134 468199 0.782383 + . ID=CGI_10022394; scaffold541 WUBlastX LINE_CR1 468134 468199 22 + . . scaffold541 GLEAN mRNA 469602 471608 0.782383 + . ID=CGI_10022394; scaffold541 WUBlastX LINE_I 469602 471608 30 + . . scaffold541 GLEAN mRNA 469491 471170 0.782383 + . ID=CGI_10022394; scaffold541 WUBlastX LINE_RTE-X 469491 471170 409 + . . scaffold541 GLEAN mRNA 476042 476086 0.782383 + . ID=CGI_10022394; scaffold541 TRF Tandem_Repeat 476042 476086 72 + . . scaffold541 GLEAN mRNA 476257 476285 0.782383 + . ID=CGI_10022394; scaffold541 TRF Tandem_Repeat 476257 476285 58 + . . scaffold541 GLEAN mRNA 476420 476456 0.782383 + . ID=CGI_10022394; scaffold541 TRF Tandem_Repeat 476420 476456 65 + . . scaffold541 GLEAN mRNA 476574 476636 0.782383 + . ID=CGI_10022394; scaffold541 TRF Tandem_Repeat 476574 476636 90 + . . scaffold541 GLEAN mRNA 476565 476636 0.782383 + . ID=CGI_10022394; scaffold541 TRF Tandem_Repeat 476565 476636 69 + . . scaffold541 GLEAN mRNA 482294 482341 0.999995 + . ID=CGI_10022395; scaffold541 TRF Tandem_Repeat 482294 482341 89 + . . scaffold541 GLEAN mRNA 526212 526309 0.999676 + . ID=CGI_10022396; scaffold541 TRF Tandem_Repeat 526212 526309 124 + . . scaffold541 GLEAN mRNA 527189 527281 0.999676 + . ID=CGI_10022396; scaffold541 TRF Tandem_Repeat 527189 527281 159 + . . scaffold541 GLEAN mRNA 527254 527525 0.999676 + . ID=CGI_10022396; scaffold541 TRF Tandem_Repeat 527254 527525 351 + . . scaffold541 GLEAN mRNA 529046 529113 0.999676 + . ID=CGI_10022396; scaffold541 TRF Tandem_Repeat 529046 529113 136 + . . scaffold541 GLEAN mRNA 530932 531164 0.999676 + . ID=CGI_10022396; scaffold541 TRF Tandem_Repeat 530932 531164 448 + . . scaffold541 GLEAN mRNA 534773 535031 0.489169 - . ID=CGI_10022398; scaffold541 TRF Tandem_Repeat 534773 535031 118 + . . scaffold541 GLEAN mRNA 539370 539576 0.489169 - . ID=CGI_10022398; scaffold541 TRF Tandem_Repeat 539370 539576 207 + . . scaffold541 GLEAN mRNA 539814 540129 0.489169 - . ID=CGI_10022398; scaffold541 TRF Tandem_Repeat 539814 540129 485 + . . scaffold541 GLEAN mRNA 541026 541395 0.489169 - . ID=CGI_10022398; scaffold541 TRF Tandem_Repeat 541026 541395 573 + . . scaffold541 GLEAN mRNA 542146 543786 0.489169 - . ID=CGI_10022398; scaffold541 TRF Tandem_Repeat 542146 543786 3151 + . . scaffold541 GLEAN mRNA 543939 544204 0.489169 - . ID=CGI_10022398; scaffold541 TRF Tandem_Repeat 543939 544204 424 + . . scaffold541 GLEAN mRNA 550681 551556 1 + . ID=CGI_10022399; scaffold541 TRF Tandem_Repeat 550681 551556 605 + . . scaffold541 GLEAN mRNA 552036 552413 1 + . ID=CGI_10022399; scaffold541 TRF Tandem_Repeat 552036 552413 452 + . . scaffold541 GLEAN mRNA 552100 552216 1 + . ID=CGI_10022399; scaffold541 TRF Tandem_Repeat 552100 552216 75 + . . scaffold541 GLEAN mRNA 552051 552209 1 + . ID=CGI_10022399; scaffold541 TRF Tandem_Repeat 552051 552209 72 + . . scaffold541 GLEAN mRNA 553179 554156 1 + . ID=CGI_10022399; scaffold541 TRF Tandem_Repeat 553179 554156 1084 + . . scaffold541 GLEAN mRNA 553500 554257 1 + . ID=CGI_10022399; scaffold541 TRF Tandem_Repeat 553500 554257 482 + . . scaffold541 GLEAN mRNA 567106 567221 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 567106 567221 74 + . . scaffold541 GLEAN mRNA 567314 567740 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 567314 567740 396 + . . scaffold541 GLEAN mRNA 567314 567740 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 567314 567740 446 + . . scaffold541 GLEAN mRNA 567934 568022 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 567934 568022 78 + . . scaffold541 GLEAN mRNA 567896 568100 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 567896 568100 224 + . . scaffold541 GLEAN mRNA 570082 570240 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 570082 570240 272 + . . scaffold541 GLEAN mRNA 571203 571743 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 571203 571743 830 + . . scaffold541 GLEAN mRNA 573504 574271 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 573504 574271 1204 + . . scaffold541 GLEAN mRNA 574778 575268 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 574778 575268 831 + . . scaffold541 GLEAN mRNA 577731 578453 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 577731 578453 540 + . . scaffold541 GLEAN mRNA 577731 578306 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 577731 578306 496 + . . scaffold541 GLEAN mRNA 577738 578313 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 577738 578313 636 + . . scaffold541 GLEAN mRNA 578503 579807 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 578503 579807 1731 + . . scaffold541 GLEAN mRNA 580859 581019 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 580859 581019 286 + . . scaffold541 GLEAN mRNA 583207 583366 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 583207 583366 234 + . . scaffold541 GLEAN mRNA 584527 584660 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 584527 584660 150 + . . scaffold541 GLEAN mRNA 584783 585139 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 584783 585139 522 + . . scaffold541 GLEAN mRNA 584783 585139 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 584783 585139 579 + . . scaffold541 GLEAN mRNA 585702 585747 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 585702 585747 56 + . . scaffold541 GLEAN mRNA 585702 585731 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 585702 585731 51 + . . scaffold541 GLEAN mRNA 589942 590347 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 589942 590347 428 + . . scaffold541 GLEAN mRNA 590573 590717 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 590573 590717 197 + . . scaffold541 GLEAN mRNA 590573 590748 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 590573 590748 273 + . . scaffold541 GLEAN mRNA 590959 591613 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 590959 591613 1143 + . . scaffold541 GLEAN mRNA 592729 593162 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 592729 593162 679 + . . scaffold191 GLEAN mRNA 64873 65004 0.998524 - . ID=CGI_10022409; scaffold191 TRF Tandem_Repeat 64873 65004 129 + . . scaffold191 GLEAN mRNA 64874 64997 0.998524 - . ID=CGI_10022409; scaffold191 TRF Tandem_Repeat 64874 64997 135 + . . scaffold191 GLEAN mRNA 65407 65479 0.998524 - . ID=CGI_10022409; scaffold191 TRF Tandem_Repeat 65407 65479 103 + . . scaffold191 GLEAN mRNA 65015 65248 0.998524 - . ID=CGI_10022409; scaffold191 WUBlastX DNA_NOF? 65015 65248 71 + . . scaffold191 GLEAN mRNA 72425 72685 0.360262 - . ID=CGI_10022410; scaffold191 TRF Tandem_Repeat 72425 72685 283 + . . scaffold191 GLEAN mRNA 72471 72724 0.360262 - . ID=CGI_10022410; scaffold191 TRF Tandem_Repeat 72471 72724 325 + . . scaffold191 GLEAN mRNA 72471 72689 0.360262 - . ID=CGI_10022410; scaffold191 TRF Tandem_Repeat 72471 72689 287 + . . scaffold191 GLEAN mRNA 73540 73758 0.360262 - . ID=CGI_10022410; scaffold191 TRF Tandem_Repeat 73540 73758 222 + . . scaffold191 GLEAN mRNA 74534 74779 0.360262 - . ID=CGI_10022410; scaffold191 TRF Tandem_Repeat 74534 74779 233 + . . scaffold191 GLEAN mRNA 74951 75150 0.360262 - . ID=CGI_10022410; scaffold191 TRF Tandem_Repeat 74951 75150 235 + . . scaffold191 GLEAN mRNA 75721 75906 0.360262 - . ID=CGI_10022410; scaffold191 TRF Tandem_Repeat 75721 75906 188 + . . scaffold191 GLEAN mRNA 174687 174751 0.717223 - . ID=CGI_10022414; scaffold191 TRF Tandem_Repeat 174687 174751 58 + . . scaffold191 GLEAN mRNA 182326 182415 0.717223 - . ID=CGI_10022414; scaffold191 WUBlastX LINE_CR1-L2 182326 182415 21 + . . scaffold191 GLEAN mRNA 181760 182359 0.717223 - . ID=CGI_10022414; scaffold191 WUBlastX LINE_CR1-L2 181760 182359 243 + . . scaffold191 GLEAN mRNA 206071 206409 0.997333 - . ID=CGI_10022416; scaffold191 WUBlastX DNA_Kolobok 206071 206409 74 - . . scaffold191 GLEAN mRNA 206517 206783 0.997333 - . ID=CGI_10022416; scaffold191 WUBlastX DNA_Kolobok 206517 206783 40 - . . scaffold191 GLEAN mRNA 205828 206040 0.997333 - . ID=CGI_10022416; scaffold191 WUBlastX DNA_Kolobok 205828 206040 69 - . . scaffold191 GLEAN mRNA 209176 209322 0.997333 - . ID=CGI_10022416; scaffold191 WUBlastX LINE_R2 209176 209322 21 - . . scaffold191 GLEAN mRNA 209083 209229 0.997333 - . ID=CGI_10022416; scaffold191 WUBlastX LINE_I 209083 209229 21 - . . scaffold191 GLEAN mRNA 206517 206717 0.997333 - . ID=CGI_10022416; scaffold191 WUBlastX DNA_Kolobok 206517 206717 76 - . . scaffold191 GLEAN mRNA 206833 207351 0.997333 - . ID=CGI_10022416; scaffold191 WUBlastX DNA_Kolobok 206833 207351 226 - . . scaffold191 GLEAN mRNA 206131 206391 0.997333 - . ID=CGI_10022416; scaffold191 WUBlastX DNA_Kolobok 206131 206391 93 - . . scaffold191 GLEAN mRNA 221977 222013 0.99515 - . ID=CGI_10022417; scaffold191 TRF Tandem_Repeat 221977 222013 56 + . . scaffold191 GLEAN mRNA 487595 487662 0.999351 - . ID=CGI_10022422; scaffold191 TRF Tandem_Repeat 487595 487662 82 + . . scaffold191 GLEAN mRNA 491427 491510 0.999351 - . ID=CGI_10022422; scaffold191 TRF Tandem_Repeat 491427 491510 114 + . . scaffold191 GLEAN mRNA 494382 494411 0.999351 - . ID=CGI_10022422; scaffold191 TRF Tandem_Repeat 494382 494411 60 + . . scaffold191 GLEAN mRNA 555619 555675 0.666431 - . ID=CGI_10022426; scaffold191 TRF Tandem_Repeat 555619 555675 114 + . . scaffold191 GLEAN mRNA 554405 554479 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_RTE-X 554405 554479 20 - . . scaffold191 GLEAN mRNA 555050 555262 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_RTE-X 555050 555262 123 - . . scaffold191 GLEAN mRNA 553967 554314 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_RTE-X 553967 554314 56 - . . scaffold191 GLEAN mRNA 554529 554972 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_RTE-X 554529 554972 232 - . . scaffold191 GLEAN mRNA 554075 554263 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_RTE-X 554075 554263 57 - . . scaffold191 GLEAN mRNA 552049 552270 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX DNA_MuDR 552049 552270 97 - . . scaffold191 GLEAN mRNA 555804 555926 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_RTE-X 555804 555926 21 - . . scaffold191 GLEAN mRNA 555062 555301 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_Jockey 555062 555301 40 - . . scaffold191 GLEAN mRNA 551857 552282 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX DNA_MuDR 551857 552282 68 - . . scaffold191 GLEAN mRNA 551142 551546 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX DNA_MuDR 551142 551546 93 - . . scaffold191 GLEAN mRNA 553023 553178 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_CR1 553023 553178 40 - . . scaffold191 GLEAN mRNA 554505 555029 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_RTE-X 554505 555029 196 - . . scaffold191 GLEAN mRNA 551181 551624 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX DNA_MuDR 551181 551624 89 - . . scaffold191 GLEAN mRNA 556121 556921 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_L1-Tx1 556121 556921 444 + . . scaffold191 GLEAN mRNA 553026 553154 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_CR1 553026 553154 62 - . . scaffold191 GLEAN mRNA 562074 562135 0.666431 - . ID=CGI_10022426; scaffold191 TRF Tandem_Repeat 562074 562135 106 + . . scaffold191 GLEAN mRNA 563976 564006 0.666431 - . ID=CGI_10022426; scaffold191 TRF Tandem_Repeat 563976 564006 62 + . . scaffold191 GLEAN mRNA 559555 559911 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_L1-Tx1 559555 559911 52 + . . scaffold191 GLEAN mRNA 557581 558756 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_L1-Tx1 557581 558756 691 + . . scaffold191 GLEAN mRNA 558734 559573 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_L1-Tx1 558734 559573 174 + . . scaffold191 GLEAN mRNA 577180 577266 0.666431 - . ID=CGI_10022426; scaffold191 TRF Tandem_Repeat 577180 577266 174 + . . scaffold191 GLEAN mRNA 574473 574643 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX DNA_P 574473 574643 42 - . . scaffold191 GLEAN mRNA 578145 578312 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_Penelope 578145 578312 67 - . . scaffold191 GLEAN mRNA 574428 574643 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX DNA_P 574428 574643 31 - . . scaffold191 GLEAN mRNA 575165 575329 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX DNA_IS4EU 575165 575329 118 - . . scaffold191 GLEAN mRNA 557044 558720 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_L1 557044 558720 308 + . . scaffold191 GLEAN mRNA 556999 557226 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX LINE_L1-Tx1 556999 557226 47 + . . scaffold191 GLEAN mRNA 668916 669710 0.539079 - . ID=CGI_10022428; scaffold191 TRF Tandem_Repeat 668916 669710 1029 + . . scaffold496 GLEAN mRNA 32279 32323 0.999896 + . ID=CGI_10022432; scaffold496 TRF Tandem_Repeat 32279 32323 90 + . . scaffold496 GLEAN mRNA 191997 192044 0.248463 - . ID=CGI_10022448; scaffold496 TRF Tandem_Repeat 191997 192044 96 + . . scaffold496 GLEAN mRNA 192044 192075 0.248463 - . ID=CGI_10022448; scaffold496 TRF Tandem_Repeat 192044 192075 64 + . . scaffold496 GLEAN mRNA 197554 197589 0.248463 - . ID=CGI_10022448; scaffold496 TRF Tandem_Repeat 197554 197589 72 + . . scaffold496 GLEAN mRNA 204551 204589 0.248463 - . ID=CGI_10022448; scaffold496 TRF Tandem_Repeat 204551 204589 78 + . . scaffold496 GLEAN mRNA 260838 260984 0.248463 - . ID=CGI_10022448; scaffold496 TRF Tandem_Repeat 260838 260984 213 + . . scaffold496 GLEAN mRNA 266395 266652 0.248463 - . ID=CGI_10022448; scaffold496 WUBlastX DNA_hAT 266395 266859 73 + . . scaffold496 GLEAN mRNA 260838 260984 0.749037 + . ID=CGI_10022449; scaffold496 TRF Tandem_Repeat 260838 260984 213 + . . scaffold496 GLEAN mRNA 266395 266859 0.749037 + . ID=CGI_10022449; scaffold496 WUBlastX DNA_hAT 266395 266859 73 + . . scaffold496 GLEAN mRNA 276084 276198 0.351349 + . ID=CGI_10022450; scaffold496 TRF Tandem_Repeat 276084 276198 67 + . . scaffold496 GLEAN mRNA 276086 276212 0.351349 + . ID=CGI_10022450; scaffold496 TRF Tandem_Repeat 276086 276212 107 + . . scaffold496 GLEAN mRNA 276102 276217 0.351349 + . ID=CGI_10022450; scaffold496 TRF Tandem_Repeat 276102 276217 223 + . . scaffold496 GLEAN mRNA 279772 279835 0.351349 + . ID=CGI_10022450; scaffold496 TRF Tandem_Repeat 279772 279835 85 + . . scaffold496 GLEAN mRNA 279787 279834 0.351349 + . ID=CGI_10022450; scaffold496 TRF Tandem_Repeat 279787 279834 71 + . . scaffold496 GLEAN mRNA 285454 285987 0.934292 + . ID=CGI_10022451; scaffold496 WUBlastX LTR_Ngaro 285454 285987 60 + . . scaffold496 GLEAN mRNA 285553 286002 0.934292 + . ID=CGI_10022451; scaffold496 WUBlastX LTR_Ngaro 285553 286002 94 + . . scaffold496 GLEAN mRNA 286095 286247 0.934292 + . ID=CGI_10022451; scaffold496 WUBlastX LTR_Ngaro 286095 286247 39 + . . scaffold496 GLEAN mRNA 286253 286963 0.934292 + . ID=CGI_10022451; scaffold496 WUBlastX LTR_Ngaro 286253 286963 173 - . . scaffold496 GLEAN mRNA 285736 285975 0.934292 + . ID=CGI_10022451; scaffold496 WUBlastX LTR_Ngaro 285736 285975 135 + . . scaffold496 GLEAN mRNA 285980 286087 0.934292 + . ID=CGI_10022451; scaffold496 WUBlastX LTR_Ngaro 285980 286087 48 + . . scaffold496 GLEAN mRNA 286119 286403 0.934292 + . ID=CGI_10022451; scaffold496 WUBlastX LTR_Ngaro 286119 286403 73 + . . scaffold496 GLEAN mRNA 292405 292465 1 - . ID=CGI_10022452; scaffold496 TRF Tandem_Repeat 292405 292465 50 + . . scaffold496 GLEAN mRNA 353999 354027 0.384848 + . ID=CGI_10022457; scaffold496 TRF Tandem_Repeat 353999 354027 58 + . . scaffold496 GLEAN mRNA 465013 465969 0.499096 - . ID=CGI_10022459; scaffold496 TRF Tandem_Repeat 465013 465969 1250 + . . scaffold496 GLEAN mRNA 494141 494287 0.360504 + . ID=CGI_10022460; scaffold496 TRF Tandem_Repeat 494141 494287 73 + . . scaffold496 GLEAN mRNA 494203 494332 0.360504 + . ID=CGI_10022460; scaffold496 TRF Tandem_Repeat 494203 494332 93 + . . scaffold496 GLEAN mRNA 509398 509461 0.887965 - . ID=CGI_10022461; scaffold496 TRF Tandem_Repeat 509398 509461 65 + . . scaffold496 GLEAN mRNA 509424 509470 0.887965 - . ID=CGI_10022461; scaffold496 TRF Tandem_Repeat 509424 509470 94 + . . scaffold496 GLEAN mRNA 514173 514229 0.887965 - . ID=CGI_10022461; scaffold496 TRF Tandem_Repeat 514173 514229 105 + . . scaffold496 GLEAN mRNA 652801 652850 0.775655 + . ID=CGI_10022470; scaffold496 TRF Tandem_Repeat 652801 652850 100 + . . scaffold496 GLEAN mRNA 725485 725901 0.615833 - . ID=CGI_10022473; scaffold496 WUBlastX LINE_CR1 725485 725901 77 + . . scaffold496 GLEAN mRNA 725276 725512 0.615833 - . ID=CGI_10022473; scaffold496 WUBlastX LINE_L1-Tx1 725276 725512 69 + . . scaffold1021 GLEAN mRNA 11904 11955 1 + . ID=CGI_10022476; scaffold1021 TRF Tandem_Repeat 11904 11955 59 + . . scaffold1021 GLEAN mRNA 51314 51379 1 - . ID=CGI_10022481; scaffold1021 TRF Tandem_Repeat 51314 51379 123 + . . scaffold1021 GLEAN mRNA 90661 91610 0.972899 - . ID=CGI_10022483; scaffold1021 TRF Tandem_Repeat 90661 91610 1340 + . . scaffold1021 GLEAN mRNA 91622 91664 0.972899 - . ID=CGI_10022483; scaffold1021 TRF Tandem_Repeat 91622 91664 68 + . . scaffold1021 GLEAN mRNA 91615 91666 0.972899 - . ID=CGI_10022483; scaffold1021 TRF Tandem_Repeat 91615 91666 68 + . . scaffold1021 GLEAN mRNA 106073 106117 0.994213 + . ID=CGI_10022484; scaffold1021 TRF Tandem_Repeat 106073 106117 90 + . . scaffold1021 GLEAN mRNA 103677 103769 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 103677 103769 26 + . . scaffold1021 GLEAN mRNA 104739 104852 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 104739 104852 36 + . . scaffold1021 GLEAN mRNA 104843 105007 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 104843 105007 46 + . . scaffold1021 GLEAN mRNA 100986 101150 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 100986 101150 101 + . . scaffold1021 GLEAN mRNA 101520 102215 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 101520 102215 272 + . . scaffold1021 GLEAN mRNA 102301 102486 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 102301 102486 73 + . . scaffold1021 GLEAN mRNA 102524 103147 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 102524 103147 168 + . . scaffold1021 GLEAN mRNA 102220 102507 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 102220 102507 68 + . . scaffold1021 GLEAN mRNA 102932 103225 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 102932 103225 49 + . . scaffold1021 GLEAN mRNA 128945 128988 0.994213 + . ID=CGI_10022484; scaffold1021 TRF Tandem_Repeat 128945 128988 88 + . . scaffold1021 GLEAN mRNA 139101 139150 0.99899 + . ID=CGI_10022485; scaffold1021 TRF Tandem_Repeat 139101 139150 100 + . . scaffold1021 GLEAN mRNA 260119 261034 0.558214 - . ID=CGI_10022488; scaffold1021 TRF Tandem_Repeat 260119 261034 1287 + . . scaffold1021 GLEAN mRNA 262055 262088 0.558214 - . ID=CGI_10022488; scaffold1021 TRF Tandem_Repeat 262055 262088 50 + . . scaffold1021 GLEAN mRNA 261352 261573 0.558214 - . ID=CGI_10022488; scaffold1021 WUBlastX LINE_L1-Tx1 261352 261573 93 + . . scaffold1021 GLEAN mRNA 360361 360408 0.999676 - . ID=CGI_10022491; scaffold1021 TRF Tandem_Repeat 360361 360408 80 + . . scaffold1021 GLEAN mRNA 384839 384887 0.499837 - . ID=CGI_10022494; scaffold1021 TRF Tandem_Repeat 384839 384887 98 + . . scaffold1021 GLEAN mRNA 385572 386252 0.499837 - . ID=CGI_10022494; scaffold1021 TRF Tandem_Repeat 385572 386252 735 + . . scaffold1021 GLEAN mRNA 388465 388503 0.499837 - . ID=CGI_10022494; scaffold1021 TRF Tandem_Repeat 388465 388503 78 + . . scaffold1021 GLEAN mRNA 388960 389340 0.499837 - . ID=CGI_10022494; scaffold1021 TRF Tandem_Repeat 388960 389340 548 + . . scaffold1021 GLEAN mRNA 388948 389340 0.499837 - . ID=CGI_10022494; scaffold1021 TRF Tandem_Repeat 388948 389340 475 + . . scaffold1021 GLEAN mRNA 407941 407995 0.382628 - . ID=CGI_10022496; scaffold1021 TRF Tandem_Repeat 407941 407995 94 + . . scaffold1021 GLEAN mRNA 408744 408918 0.382628 - . ID=CGI_10022496; scaffold1021 TRF Tandem_Repeat 408744 408918 187 + . . scaffold1021 GLEAN mRNA 456375 456431 0.324995 - . ID=CGI_10022500; scaffold1021 TRF Tandem_Repeat 456375 456431 114 + . . scaffold1021 GLEAN mRNA 456487 456513 0.324995 - . ID=CGI_10022500; scaffold1021 TRF Tandem_Repeat 456487 456513 54 + . . scaffold1021 GLEAN mRNA 456581 456639 0.324995 - . ID=CGI_10022500; scaffold1021 TRF Tandem_Repeat 456581 456639 109 + . . scaffold1021 GLEAN mRNA 457634 457808 0.324995 - . ID=CGI_10022500; scaffold1021 TRF Tandem_Repeat 457634 457808 219 + . . scaffold1021 GLEAN mRNA 455368 455853 0.324995 - . ID=CGI_10022500; scaffold1021 WUBlastX LTR_Gypsy 455368 455853 28 - . . scaffold1021 GLEAN mRNA 451946 453664 0.324995 - . ID=CGI_10022500; scaffold1021 WUBlastX LINE_L1-Tx1 451946 453664 633 + . . scaffold1021 GLEAN mRNA 451856 452254 0.324995 - . ID=CGI_10022500; scaffold1021 WUBlastX LINE_CR1 451856 452254 51 + . . scaffold1021 GLEAN mRNA 460686 460780 0.324995 - . ID=CGI_10022500; scaffold1021 TRF Tandem_Repeat 460686 460780 147 + . . scaffold1021 GLEAN mRNA 482224 482266 0.997038 - . ID=CGI_10022501; scaffold1021 TRF Tandem_Repeat 482224 482266 54 + . . scaffold1021 GLEAN mRNA 504586 504699 0.783976 + . ID=CGI_10022502; scaffold1021 TRF Tandem_Repeat 504586 504699 86 + . . scaffold1021 GLEAN mRNA 562631 562760 0.761174 + . ID=CGI_10022503; scaffold1021 TRF Tandem_Repeat 562631 562760 98 + . . scaffold1021 GLEAN mRNA 581251 581544 0.999217 - . ID=CGI_10022504; scaffold1021 WUBlastX LTR_Pao 581251 581544 245 - . . scaffold1021 GLEAN mRNA 586892 587539 0.999217 - . ID=CGI_10022504; scaffold1021 WUBlastX LTR_Pao 586892 587539 20 - . . scaffold1021 GLEAN mRNA 585552 586595 0.999217 - . ID=CGI_10022504; scaffold1021 WUBlastX LTR_Pao 585552 586595 274 - . . scaffold1021 GLEAN mRNA 581544 583004 0.999217 - . ID=CGI_10022504; scaffold1021 WUBlastX LTR_Pao 581544 583004 1070 - . . scaffold1021 GLEAN mRNA 582606 585029 0.999217 - . ID=CGI_10022504; scaffold1021 WUBlastX LTR_Pao 582606 585029 1584 - . . scaffold1021 GLEAN mRNA 586970 587278 0.999217 - . ID=CGI_10022504; scaffold1021 WUBlastX LTR_Pao 586970 587278 24 - . . scaffold1021 GLEAN mRNA 697145 697315 0.992587 + . ID=CGI_10022506; scaffold1021 WUBlastX LINE_CR1 697145 697315 20 + . . scaffold1021 GLEAN mRNA 692550 693317 0.992587 + . ID=CGI_10022506; scaffold1021 WUBlastX RC_Helitron 692550 693317 295 + . . scaffold1021 GLEAN mRNA 695388 695723 0.992587 + . ID=CGI_10022506; scaffold1021 WUBlastX RC_Helitron 695388 695723 208 + . . scaffold1021 GLEAN mRNA 695721 696686 0.992587 + . ID=CGI_10022506; scaffold1021 WUBlastX RC_Helitron 695721 696686 433 + . . scaffold1021 GLEAN mRNA 693370 694071 0.992587 + . ID=CGI_10022506; scaffold1021 WUBlastX RC_Helitron 693370 694071 193 + . . scaffold1021 GLEAN mRNA 694086 695504 0.992587 + . ID=CGI_10022506; scaffold1021 WUBlastX RC_Helitron 694086 695504 553 + . . scaffold1021 GLEAN mRNA 695949 696938 0.992587 + . ID=CGI_10022506; scaffold1021 WUBlastX LINE_L2 695949 696938 70 + . . scaffold1021 GLEAN mRNA 693481 694107 0.992587 + . ID=CGI_10022506; scaffold1021 WUBlastX RC_Helitron 693481 694107 207 + . . scaffold593 GLEAN mRNA 77110 77141 0.5 + . ID=CGI_10022511; scaffold593 TRF Tandem_Repeat 77110 77141 57 + . . scaffold593 GLEAN mRNA 274506 275384 0.999999 - . ID=CGI_10022520; scaffold593 WUBlastX LINE_RTE-X 274506 275561 252 - . . scaffold593 GLEAN mRNA 303303 303336 0.998162 - . ID=CGI_10022523; scaffold593 TRF Tandem_Repeat 303303 303336 50 + . . scaffold593 GLEAN mRNA 436518 436661 0.649515 - . ID=CGI_10022527; scaffold593 TRF Tandem_Repeat 436518 436661 139 + . . scaffold593 GLEAN mRNA 436518 436661 0.522339 + . ID=CGI_10022528; scaffold593 TRF Tandem_Repeat 436518 436661 139 + . . scaffold593 GLEAN mRNA 470574 470869 1 + . ID=CGI_10022530; scaffold593 TRF Tandem_Repeat 470574 470869 379 + . . scaffold593 GLEAN mRNA 470680 470861 1 + . ID=CGI_10022530; scaffold593 TRF Tandem_Repeat 470680 470861 166 + . . scaffold593 GLEAN mRNA 483483 483854 0.997605 + . ID=CGI_10022532; scaffold593 WUBlastX LINE_RTE-BovB 483483 483854 54 - . . scaffold593 GLEAN mRNA 484677 485102 0.997605 + . ID=CGI_10022532; scaffold593 WUBlastX LINE_RTE-BovB 484677 485102 81 - . . scaffold593 GLEAN mRNA 482720 482818 0.997605 + . ID=CGI_10022532; scaffold593 WUBlastX LINE_RTE-BovB 482720 482818 20 - . . scaffold593 GLEAN mRNA 483465 483647 0.997605 + . ID=CGI_10022532; scaffold593 WUBlastX LINE_RTE-BovB 483465 483647 93 - . . scaffold593 GLEAN mRNA 483435 483629 0.997605 + . ID=CGI_10022532; scaffold593 WUBlastX LINE_RTE-BovB 483435 483629 58 - . . scaffold593 GLEAN mRNA 493222 493290 0.997605 + . ID=CGI_10022532; scaffold593 TRF Tandem_Repeat 493222 493290 59 + . . scaffold593 GLEAN mRNA 496253 496319 0.997605 + . ID=CGI_10022532; scaffold593 TRF Tandem_Repeat 496253 496319 80 + . . scaffold593 GLEAN mRNA 496265 496315 0.997605 + . ID=CGI_10022532; scaffold593 TRF Tandem_Repeat 496265 496315 84 + . . scaffold593 GLEAN mRNA 491363 492110 0.997605 + . ID=CGI_10022532; scaffold593 TRF Tandem_Repeat 491363 492110 946 + . . scaffold593 GLEAN mRNA 500902 500948 0.997973 + . ID=CGI_10022533; scaffold593 WUBlastX LTR_Gypsy-Cigr 500517 500948 31 - . . scaffold593 GLEAN mRNA 601597 601687 1 + . ID=CGI_10022535; scaffold593 TRF Tandem_Repeat 601597 601687 83 + . . scaffold593 GLEAN mRNA 675686 675724 0.996552 + . ID=CGI_10022536; scaffold593 TRF Tandem_Repeat 675686 675724 51 + . . scaffold593 GLEAN mRNA 671195 672177 0.996552 + . ID=CGI_10022536; scaffold593 TRF Tandem_Repeat 671195 672177 646 + . . scaffold593 GLEAN mRNA 671195 672184 0.996552 + . ID=CGI_10022536; scaffold593 TRF Tandem_Repeat 671195 672184 809 + . . scaffold593 GLEAN mRNA 726163 726467 0.937779 - . ID=CGI_10022539; scaffold593 WUBlastX LINE_RTE-X 726163 727323 47 - . . scaffold544 GLEAN mRNA 15534 16121 0.999993 + . ID=CGI_10022542; scaffold544 TRF Tandem_Repeat 15534 16121 1023 + . . scaffold544 GLEAN mRNA 21878 21970 0.999238 - . ID=CGI_10022543; scaffold544 TRF Tandem_Repeat 21878 21970 118 + . . scaffold544 GLEAN mRNA 21878 21970 0.999238 - . ID=CGI_10022543; scaffold544 TRF Tandem_Repeat 21878 21970 131 + . . scaffold544 GLEAN mRNA 25011 25207 0.999238 - . ID=CGI_10022543; scaffold544 TRF Tandem_Repeat 25011 25207 214 + . . scaffold544 GLEAN mRNA 25009 25201 0.999238 - . ID=CGI_10022543; scaffold544 TRF Tandem_Repeat 25009 25201 206 + . . scaffold544 GLEAN mRNA 25009 25207 0.999238 - . ID=CGI_10022543; scaffold544 TRF Tandem_Repeat 25009 25207 218 + . . scaffold544 GLEAN mRNA 26248 26696 0.999238 - . ID=CGI_10022543; scaffold544 TRF Tandem_Repeat 26248 26696 772 + . . scaffold544 GLEAN mRNA 29087 30439 0.999238 - . ID=CGI_10022543; scaffold544 TRF Tandem_Repeat 29087 30439 1642 + . . scaffold544 GLEAN mRNA 31033 31123 0.999238 - . ID=CGI_10022543; scaffold544 TRF Tandem_Repeat 31033 31123 85 + . . scaffold544 GLEAN mRNA 31113 31310 0.999238 - . ID=CGI_10022543; scaffold544 TRF Tandem_Repeat 31113 31310 360 + . . scaffold544 GLEAN mRNA 32014 32172 0.999238 - . ID=CGI_10022543; scaffold544 TRF Tandem_Repeat 32014 32172 300 + . . scaffold544 GLEAN mRNA 32429 32475 0.999238 - . ID=CGI_10022543; scaffold544 TRF Tandem_Repeat 32429 32475 94 + . . scaffold544 GLEAN mRNA 38438 38570 1 + . ID=CGI_10022544; scaffold544 TRF Tandem_Repeat 38438 38570 187 + . . scaffold544 GLEAN mRNA 38599 38706 1 + . ID=CGI_10022544; scaffold544 TRF Tandem_Repeat 38599 38706 171 + . . scaffold544 GLEAN mRNA 38192 38419 1 + . ID=CGI_10022544; scaffold544 WUBlastX LINE_RTE-X 38192 38419 71 - . . scaffold544 GLEAN mRNA 38249 38425 1 + . ID=CGI_10022544; scaffold544 WUBlastX LINE_RTE-X 38249 38425 87 - . . scaffold544 GLEAN mRNA 47914 47949 0.999376 - . ID=CGI_10022545; scaffold544 TRF Tandem_Repeat 47914 47949 72 + . . scaffold544 GLEAN mRNA 49050 49101 0.999376 - . ID=CGI_10022545; scaffold544 TRF Tandem_Repeat 49050 49101 104 + . . scaffold544 GLEAN mRNA 49636 50290 0.999376 - . ID=CGI_10022545; scaffold544 TRF Tandem_Repeat 49636 50290 661 + . . scaffold544 GLEAN mRNA 50631 50669 0.999376 - . ID=CGI_10022545; scaffold544 TRF Tandem_Repeat 50631 50669 78 + . . scaffold544 GLEAN mRNA 71028 71952 0.889149 - . ID=CGI_10022548; scaffold544 TRF Tandem_Repeat 71028 71952 1472 + . . scaffold544 GLEAN mRNA 159704 159936 0.999999 - . ID=CGI_10022551; scaffold544 TRF Tandem_Repeat 159704 159936 306 + . . scaffold544 GLEAN mRNA 159704 159936 0.999999 - . ID=CGI_10022551; scaffold544 TRF Tandem_Repeat 159704 159936 270 + . . scaffold544 GLEAN mRNA 154794 155111 0.999999 - . ID=CGI_10022551; scaffold544 WUBlastX LINE_L2 154794 155111 160 + . . scaffold544 GLEAN mRNA 210067 210863 0.999676 + . ID=CGI_10022552; scaffold544 TRF Tandem_Repeat 210067 210863 1162 + . . scaffold544 GLEAN mRNA 209819 210052 0.999676 + . ID=CGI_10022552; scaffold544 WUBlastX LINE_L1 209819 210052 72 - . . scaffold544 GLEAN mRNA 209740 209811 0.999676 + . ID=CGI_10022552; scaffold544 WUBlastX LINE_L1-Tx1 209740 209811 22 - . . scaffold544 GLEAN mRNA 210917 211087 0.999676 + . ID=CGI_10022552; scaffold544 WUBlastX LINE_L1-Tx1 210917 211087 66 - . . scaffold544 GLEAN mRNA 209771 209968 0.999676 + . ID=CGI_10022552; scaffold544 WUBlastX LINE_L1 209771 209968 46 - . . scaffold544 GLEAN mRNA 210878 211090 0.999676 + . ID=CGI_10022552; scaffold544 WUBlastX LINE_L1 210878 211090 45 - . . scaffold544 GLEAN mRNA 209758 209829 0.999676 + . ID=CGI_10022552; scaffold544 WUBlastX LINE_L1 209758 209829 26 - . . scaffold544 GLEAN mRNA 211036 211659 0.999676 + . ID=CGI_10022552; scaffold544 WUBlastX LINE_L1-Tx1 211036 211659 100 - . . scaffold544 GLEAN mRNA 211658 212224 0.999676 + . ID=CGI_10022552; scaffold544 WUBlastX LINE_L1-Tx1 211658 212224 273 - . . scaffold544 GLEAN mRNA 254100 255219 0.519606 - . ID=CGI_10022553; scaffold544 TRF Tandem_Repeat 254100 255219 1468 + . . scaffold544 GLEAN mRNA 251639 252103 0.519606 - . ID=CGI_10022553; scaffold544 WUBlastX DNA_TcMar-Tc1 251639 252103 239 - . . scaffold544 GLEAN mRNA 251639 252619 0.519606 - . ID=CGI_10022553; scaffold544 WUBlastX DNA_TcMar-Tc1 251639 252619 137 - . . scaffold544 GLEAN mRNA 270060 270746 0.519606 - . ID=CGI_10022553; scaffold544 TRF Tandem_Repeat 270060 270746 828 + . . scaffold544 GLEAN mRNA 270060 270745 0.519606 - . ID=CGI_10022553; scaffold544 TRF Tandem_Repeat 270060 270745 880 + . . scaffold544 GLEAN mRNA 272171 272617 0.519606 - . ID=CGI_10022553; scaffold544 TRF Tandem_Repeat 272171 272617 499 + . . scaffold544 GLEAN mRNA 287736 287803 0.519606 - . ID=CGI_10022553; scaffold544 TRF Tandem_Repeat 287736 287803 108 + . . scaffold544 GLEAN mRNA 288522 288563 0.519606 - . ID=CGI_10022553; scaffold544 TRF Tandem_Repeat 288522 288563 84 + . . scaffold544 GLEAN mRNA 289321 289392 0.519606 - . ID=CGI_10022553; scaffold544 TRF Tandem_Repeat 289321 289392 99 + . . scaffold544 GLEAN mRNA 288765 288929 0.519606 - . ID=CGI_10022553; scaffold544 WUBlastX LINE_RTE-BovB 288765 288929 130 - . . scaffold544 GLEAN mRNA 288771 289052 0.519606 - . ID=CGI_10022553; scaffold544 WUBlastX LINE_RTE-BovB 288771 289052 91 - . . scaffold544 GLEAN mRNA 436873 436922 0.999843 - . ID=CGI_10022562; scaffold544 TRF Tandem_Repeat 436873 436922 57 + . . scaffold544 GLEAN mRNA 453843 454374 0.999674 + . ID=CGI_10022563; scaffold544 TRF Tandem_Repeat 453843 454374 861 + . . scaffold544 GLEAN mRNA 456160 456291 0.999674 + . ID=CGI_10022563; scaffold544 TRF Tandem_Repeat 456160 456291 74 + . . scaffold544 GLEAN mRNA 508831 508869 1 + . ID=CGI_10022568; scaffold544 TRF Tandem_Repeat 508831 508869 69 + . . scaffold544 GLEAN mRNA 521991 522055 0.371277 + . ID=CGI_10022569; scaffold544 TRF Tandem_Repeat 521991 522055 69 + . . scaffold544 GLEAN mRNA 564240 564437 0.998045 - . ID=CGI_10022574; scaffold544 WUBlastX LTR_DIRS 564240 564437 71 + . . scaffold544 GLEAN mRNA 563682 564386 0.998045 - . ID=CGI_10022574; scaffold544 WUBlastX LTR_DIRS 563682 564386 95 + . . scaffold544 GLEAN mRNA 563682 564251 0.998045 - . ID=CGI_10022574; scaffold544 WUBlastX LTR_DIRS 563682 564251 106 + . . scaffold544 GLEAN mRNA 563682 564062 0.998045 - . ID=CGI_10022574; scaffold544 WUBlastX LTR_DIRS 563682 564062 156 + . . scaffold544 GLEAN mRNA 562452 562577 0.998045 - . ID=CGI_10022574; scaffold544 WUBlastX LINE_RTE-X 562452 562577 66 - . . scaffold544 GLEAN mRNA 565423 565758 0.998045 - . ID=CGI_10022574; scaffold544 WUBlastX LTR_DIRS 565423 565758 111 + . . scaffold544 GLEAN mRNA 562425 562577 0.998045 - . ID=CGI_10022574; scaffold544 WUBlastX LINE_RTE-X 562425 562577 41 - . . scaffold544 GLEAN mRNA 564449 564691 0.998045 - . ID=CGI_10022574; scaffold544 WUBlastX LTR_DIRS 564449 564691 117 + . . scaffold544 GLEAN mRNA 617626 618090 0.537216 - . ID=CGI_10022576; scaffold544 WUBlastX LINE_CR1-L2 617626 618090 127 + . . scaffold544 GLEAN mRNA 617614 618411 0.537216 - . ID=CGI_10022576; scaffold544 WUBlastX LINE_L2 617614 618411 110 + . . scaffold544 GLEAN mRNA 639583 639627 0.999542 - . ID=CGI_10022577; scaffold544 TRF Tandem_Repeat 639583 639627 90 + . . scaffold544 GLEAN mRNA 657511 657556 0.999675 - . ID=CGI_10022579; scaffold544 TRF Tandem_Repeat 657511 657556 92 + . . scaffold544 GLEAN mRNA 732347 732844 0.982522 - . ID=CGI_10022583; scaffold544 WUBlastX LTR_Gypsy-Cigr 732347 732844 186 - . . scaffold544 GLEAN mRNA 728345 728524 0.982522 - . ID=CGI_10022583; scaffold544 WUBlastX LTR_Copia 728345 728524 59 - . . scaffold544 GLEAN mRNA 729884 731971 0.982522 - . ID=CGI_10022583; scaffold544 WUBlastX LTR_Gypsy-Cigr 729884 731971 1341 - . . scaffold544 GLEAN mRNA 728492 731581 0.982522 - . ID=CGI_10022583; scaffold544 WUBlastX LTR_Gypsy-Cigr 728492 731581 2080 - . . scaffold544 GLEAN mRNA 729011 732565 0.982522 - . ID=CGI_10022583; scaffold544 WUBlastX LTR_Gypsy 729011 732565 579 - . . scaffold544 GLEAN mRNA 728423 728794 0.982522 - . ID=CGI_10022583; scaffold544 WUBlastX LTR_Gypsy 728423 728794 88 - . . scaffold544 GLEAN mRNA 738917 739033 0.982522 - . ID=CGI_10022583; scaffold544 WUBlastX DNA_TcMar-Tigge 738917 739033 35 + . . scaffold544 GLEAN mRNA 739030 739380 0.982522 - . ID=CGI_10022583; scaffold544 WUBlastX DNA_TcMar-Pogo 739030 739380 105 + . . scaffold544 GLEAN mRNA 738935 739033 0.982522 - . ID=CGI_10022583; scaffold544 WUBlastX DNA_TcMar-Pogo 738935 739033 65 + . . scaffold544 GLEAN mRNA 739066 739362 0.982522 - . ID=CGI_10022583; scaffold544 WUBlastX DNA_TcMar-Pogo 739066 739362 144 + . . scaffold544 GLEAN mRNA 739066 739296 0.982522 - . ID=CGI_10022583; scaffold544 WUBlastX DNA_TcMar-Pogo 739066 739296 156 + . . scaffold351 GLEAN mRNA 37010 37043 0.588781 + . ID=CGI_10022588; scaffold351 TRF Tandem_Repeat 37010 37043 50 + . . scaffold351 GLEAN mRNA 88836 89093 0.490582 - . ID=CGI_10022590; scaffold351 WUBlastX LTR_Ngaro 88836 89093 64 - . . scaffold351 GLEAN mRNA 88836 89174 0.490582 - . ID=CGI_10022590; scaffold351 WUBlastX LTR_Ngaro 88836 89174 57 - . . scaffold351 GLEAN mRNA 102671 103180 0.817501 - . ID=CGI_10022591; scaffold351 WUBlastX LINE_Penelope 102671 103180 169 + . . scaffold351 GLEAN mRNA 102689 103408 0.817501 - . ID=CGI_10022591; scaffold351 WUBlastX LINE_Penelope 102689 103408 167 + . . scaffold351 GLEAN mRNA 102286 102585 0.817501 - . ID=CGI_10022591; scaffold351 WUBlastX LINE_Penelope 102286 102585 82 - . . scaffold351 GLEAN mRNA 101852 102289 0.817501 - . ID=CGI_10022591; scaffold351 WUBlastX LINE_Penelope 101852 102289 103 - . . scaffold351 GLEAN mRNA 103402 103536 0.817501 - . ID=CGI_10022591; scaffold351 WUBlastX LINE_Penelope 103402 103536 34 + . . scaffold351 GLEAN mRNA 102582 102638 0.817501 - . ID=CGI_10022591; scaffold351 WUBlastX LINE_Penelope 102582 102638 26 - . . scaffold351 GLEAN mRNA 105322 105430 0.552461 - . ID=CGI_10022592; scaffold351 TRF Tandem_Repeat 105322 105430 191 + . . scaffold351 GLEAN mRNA 109501 109543 0.552461 - . ID=CGI_10022592; scaffold351 TRF Tandem_Repeat 109501 109543 86 + . . scaffold351 GLEAN mRNA 121390 121434 0.462972 - . ID=CGI_10022593; scaffold351 TRF Tandem_Repeat 121390 121434 51 + . . scaffold351 GLEAN mRNA 129817 129863 0.462972 - . ID=CGI_10022593; scaffold351 TRF Tandem_Repeat 129817 129863 58 + . . scaffold351 GLEAN mRNA 184820 184975 0.847521 + . ID=CGI_10022595; scaffold351 WUBlastX LTR_Copia 184820 184975 25 - . . scaffold351 GLEAN mRNA 184943 185146 0.847521 + . ID=CGI_10022595; scaffold351 WUBlastX LTR_ERV1 184943 185146 20 - . . scaffold351 GLEAN mRNA 185051 185131 0.847521 + . ID=CGI_10022595; scaffold351 WUBlastX LTR_Gypsy 185051 185131 25 - . . scaffold351 GLEAN mRNA 185203 185364 0.847521 + . ID=CGI_10022595; scaffold351 WUBlastX LTR_ERVK 185203 185364 34 - . . scaffold351 GLEAN mRNA 302245 302430 0.747441 - . ID=CGI_10022603; scaffold351 WUBlastX LTR_Pao 302245 302430 40 - . . scaffold351 GLEAN mRNA 298997 299506 0.747441 - . ID=CGI_10022603; scaffold351 WUBlastX DNA_Maverick 298997 299506 124 + . . scaffold351 GLEAN mRNA 298878 298973 0.747441 - . ID=CGI_10022603; scaffold351 WUBlastX DNA_Maverick 298878 298973 27 + . . scaffold351 GLEAN mRNA 309746 309825 0.777625 + . ID=CGI_10022605; scaffold351 TRF Tandem_Repeat 309746 309825 151 + . . scaffold351 GLEAN mRNA 306897 307292 0.777625 + . ID=CGI_10022605; scaffold351 WUBlastX DNA_Sola 306897 307292 68 + . . scaffold351 GLEAN mRNA 312738 313628 0.777625 + . ID=CGI_10022605; scaffold351 WUBlastX LINE_L1-Tx1 312738 313628 169 - . . scaffold351 GLEAN mRNA 311679 312191 0.777625 + . ID=CGI_10022605; scaffold351 WUBlastX DNA_Sola 311679 312191 175 + . . scaffold351 GLEAN mRNA 314936 315103 0.777625 + . ID=CGI_10022605; scaffold351 WUBlastX DNA_Sola 314936 315118 78 + . . scaffold351 GLEAN mRNA 313642 314280 0.777625 + . ID=CGI_10022605; scaffold351 WUBlastX DNA_Sola 313642 314280 210 + . . scaffold351 GLEAN mRNA 314933 315085 0.777625 + . ID=CGI_10022605; scaffold351 WUBlastX DNA_Sola 314933 315085 108 + . . scaffold351 GLEAN mRNA 313573 314778 0.777625 + . ID=CGI_10022605; scaffold351 WUBlastX DNA_Sola 313573 314778 108 + . . scaffold351 GLEAN mRNA 369687 369722 0.544498 + . ID=CGI_10022606; scaffold351 TRF Tandem_Repeat 369687 369722 72 + . . scaffold351 GLEAN mRNA 412408 412466 1 + . ID=CGI_10022607; scaffold351 TRF Tandem_Repeat 412408 412466 54 + . . scaffold351 GLEAN mRNA 412584 412620 1 + . ID=CGI_10022607; scaffold351 TRF Tandem_Repeat 412584 412620 74 + . . scaffold351 GLEAN mRNA 414761 414844 1 + . ID=CGI_10022607; scaffold351 TRF Tandem_Repeat 414761 414844 61 + . . scaffold351 GLEAN mRNA 414799 414849 1 + . ID=CGI_10022607; scaffold351 TRF Tandem_Repeat 414799 414849 57 + . . scaffold351 GLEAN mRNA 564332 564730 0.999463 - . ID=CGI_10022611; scaffold351 TRF Tandem_Repeat 564332 564730 461 + . . scaffold351 GLEAN mRNA 564332 564697 0.999463 - . ID=CGI_10022611; scaffold351 TRF Tandem_Repeat 564332 564697 448 + . . scaffold351 GLEAN mRNA 566316 566349 0.999463 - . ID=CGI_10022611; scaffold351 TRF Tandem_Repeat 566316 566349 50 + . . scaffold351 GLEAN mRNA 576130 576173 1 + . ID=CGI_10022612; scaffold351 TRF Tandem_Repeat 576130 576173 88 + . . scaffold351 GLEAN mRNA 576262 576295 1 + . ID=CGI_10022612; scaffold351 TRF Tandem_Repeat 576262 576295 68 + . . scaffold351 GLEAN mRNA 590379 590409 1 - . ID=CGI_10022614; scaffold351 TRF Tandem_Repeat 590379 590409 62 + . . scaffold351 GLEAN mRNA 605368 605449 0.990656 + . ID=CGI_10022615; scaffold351 TRF Tandem_Repeat 605368 605449 92 + . . scaffold351 GLEAN mRNA 610331 610526 0.972747 - . ID=CGI_10022616; scaffold351 TRF Tandem_Repeat 610331 610526 189 + . . scaffold351 GLEAN mRNA 610492 610683 0.972747 - . ID=CGI_10022616; scaffold351 TRF Tandem_Repeat 610492 610683 339 + . . scaffold351 GLEAN mRNA 613480 613641 0.972747 - . ID=CGI_10022616; scaffold351 TRF Tandem_Repeat 613480 613641 139 + . . scaffold351 GLEAN mRNA 626892 626963 0.972747 - . ID=CGI_10022616; scaffold351 TRF Tandem_Repeat 626892 626963 135 + . . scaffold351 GLEAN mRNA 634884 634966 1 + . ID=CGI_10022617; scaffold351 TRF Tandem_Repeat 634884 634966 139 + . . scaffold351 GLEAN mRNA 644813 644862 1 - . ID=CGI_10022618; scaffold351 TRF Tandem_Repeat 644813 644862 100 + . . scaffold351 GLEAN mRNA 665592 665641 1 + . ID=CGI_10022620; scaffold351 TRF Tandem_Repeat 665592 665641 59 + . . scaffold351 GLEAN mRNA 674234 674266 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 674234 674266 57 + . . scaffold351 GLEAN mRNA 681616 681764 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 681616 681764 174 + . . scaffold351 GLEAN mRNA 682783 682931 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 682783 682931 165 + . . scaffold351 GLEAN mRNA 682786 682868 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 682786 682868 51 + . . scaffold351 GLEAN mRNA 682822 682905 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 682822 682905 55 + . . scaffold351 GLEAN mRNA 683948 684096 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 683948 684096 165 + . . scaffold351 GLEAN mRNA 683951 684033 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 683951 684033 51 + . . scaffold351 GLEAN mRNA 683987 684070 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 683987 684070 55 + . . scaffold351 GLEAN mRNA 685147 685291 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 685147 685291 168 + . . scaffold351 GLEAN mRNA 685147 685321 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 685147 685321 147 + . . scaffold351 GLEAN mRNA 690758 690899 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 690758 690899 149 + . . scaffold351 GLEAN mRNA 690908 691145 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 690908 691145 217 + . . scaffold351 GLEAN mRNA 691154 691391 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 691154 691391 217 + . . scaffold351 GLEAN mRNA 691400 691637 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 691400 691637 217 + . . scaffold351 GLEAN mRNA 691646 691883 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 691646 691883 217 + . . scaffold351 GLEAN mRNA 691892 692129 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 691892 692129 217 + . . scaffold351 GLEAN mRNA 692138 692375 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 692138 692375 217 + . . scaffold351 GLEAN mRNA 692384 692621 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 692384 692621 217 + . . scaffold351 GLEAN mRNA 692630 692867 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 692630 692867 217 + . . scaffold351 GLEAN mRNA 692876 693113 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 692876 693113 217 + . . scaffold351 GLEAN mRNA 693122 693359 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 693122 693359 208 + . . scaffold351 GLEAN mRNA 693368 693605 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 693368 693605 226 + . . scaffold351 GLEAN mRNA 693443 693531 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 693443 693531 66 + . . scaffold351 GLEAN mRNA 693183 694212 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 693183 694212 652 + . . scaffold351 GLEAN mRNA 693655 693744 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 693655 693744 50 + . . scaffold351 GLEAN mRNA 693830 694064 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 693830 694064 211 + . . scaffold351 GLEAN mRNA 690797 693741 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 690797 693741 5683 + . . scaffold351 GLEAN mRNA 690767 694218 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 690767 694218 4354 + . . scaffold351 GLEAN mRNA 694073 694219 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 694073 694219 168 + . . scaffold351 GLEAN mRNA 694999 695145 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 694999 695145 168 + . . scaffold351 GLEAN mRNA 698155 698365 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 698155 698365 242 + . . scaffold351 GLEAN mRNA 698374 698537 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 698374 698537 175 + . . scaffold351 GLEAN mRNA 698155 699143 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 698155 699143 1093 + . . scaffold351 GLEAN mRNA 698401 698960 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 698401 698960 289 + . . scaffold351 GLEAN mRNA 698709 698802 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 698709 698802 56 + . . scaffold351 GLEAN mRNA 698815 698978 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 698815 698978 166 + . . scaffold351 GLEAN mRNA 698440 699143 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 698440 699143 519 + . . scaffold351 GLEAN mRNA 699016 699320 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 699016 699320 178 + . . scaffold351 GLEAN mRNA 698369 700598 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 698369 700598 1905 + . . scaffold351 GLEAN mRNA 699190 699353 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 699190 699353 159 + . . scaffold351 GLEAN mRNA 699281 699743 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 699281 699743 374 + . . scaffold351 GLEAN mRNA 699631 699794 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 699631 699794 166 + . . scaffold351 GLEAN mRNA 699658 700217 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 699658 700217 282 + . . scaffold351 GLEAN mRNA 700069 700235 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 700069 700235 181 + . . scaffold351 GLEAN mRNA 700273 700522 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 700273 700522 182 + . . scaffold351 GLEAN mRNA 710404 710630 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 710404 710630 179 + . . scaffold351 GLEAN mRNA 710656 710797 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 710656 710797 140 + . . scaffold351 GLEAN mRNA 715812 715996 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 715812 715996 129 + . . scaffold351 GLEAN mRNA 716019 716157 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 716019 716157 129 + . . scaffold351 GLEAN mRNA 716169 716428 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 716169 716428 195 + . . scaffold351 GLEAN mRNA 716202 716490 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 716202 716490 287 + . . scaffold351 GLEAN mRNA 717534 717572 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 717534 717572 69 + . . scaffold351 GLEAN mRNA 718374 718413 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 718374 718413 71 + . . scaffold351 GLEAN mRNA 724779 725351 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 724779 725351 270 + . . scaffold351 GLEAN mRNA 724810 725537 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 724810 725537 334 + . . scaffold351 GLEAN mRNA 724765 725537 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 724765 725537 1000 + . . scaffold351 GLEAN mRNA 724876 725513 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 724876 725513 260 + . . scaffold351 GLEAN mRNA 734645 734786 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 734645 734786 149 + . . scaffold351 GLEAN mRNA 734909 735047 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 734909 735047 152 + . . scaffold351 GLEAN mRNA 735056 735197 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 735056 735197 142 + . . scaffold351 GLEAN mRNA 737836 737876 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 737836 737876 73 + . . scaffold351 GLEAN mRNA 743867 743941 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 743867 743941 150 + . . scaffold351 GLEAN mRNA 743993 744036 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 743993 744036 88 + . . scaffold351 GLEAN mRNA 758842 758897 0.999672 + . ID=CGI_10022622; scaffold351 TRF Tandem_Repeat 758842 758897 112 + . . scaffold1360 GLEAN mRNA 39707 40006 0.715639 + . ID=CGI_10022624; scaffold1360 WUBlastX LINE_RTE-BovB 39707 40006 163 - . . scaffold1360 GLEAN mRNA 40089 40307 0.715639 + . ID=CGI_10022624; scaffold1360 WUBlastX LINE_RTE-BovB 40089 40307 97 - . . scaffold1360 GLEAN mRNA 40305 40769 0.715639 + . ID=CGI_10022624; scaffold1360 WUBlastX LINE_RTE-BovB 40305 40769 285 - . . scaffold1360 GLEAN mRNA 40822 41097 0.715639 + . ID=CGI_10022624; scaffold1360 WUBlastX LINE_RTE-BovB 40822 41097 104 - . . scaffold1360 GLEAN mRNA 40203 40778 0.715639 + . ID=CGI_10022624; scaffold1360 WUBlastX LINE_RTE-BovB 40203 40778 144 - . . scaffold1360 GLEAN mRNA 39710 40093 0.715639 + . ID=CGI_10022624; scaffold1360 WUBlastX LINE_RTE-BovB 39710 40093 50 - . . scaffold1360 GLEAN mRNA 40846 41184 0.715639 + . ID=CGI_10022624; scaffold1360 WUBlastX LINE_RTE-BovB 40846 41184 44 - . . scaffold1360 GLEAN mRNA 100230 100771 1 + . ID=CGI_10022625; scaffold1360 TRF Tandem_Repeat 100230 100771 604 + . . scaffold1360 GLEAN mRNA 110638 110935 0.913813 + . ID=CGI_10022626; scaffold1360 TRF Tandem_Repeat 110638 110935 501 + . . scaffold1360 GLEAN mRNA 116026 116073 0.913813 + . ID=CGI_10022626; scaffold1360 TRF Tandem_Repeat 116026 116073 78 + . . scaffold1360 GLEAN mRNA 114528 115020 0.913813 + . ID=CGI_10022626; scaffold1360 TRF Tandem_Repeat 114528 115020 842 + . . scaffold1360 GLEAN mRNA 114554 115014 0.913813 + . ID=CGI_10022626; scaffold1360 TRF Tandem_Repeat 114554 115014 276 + . . scaffold1360 GLEAN mRNA 126060 126090 0.814159 - . ID=CGI_10022629; scaffold1360 TRF Tandem_Repeat 126060 126090 53 + . . scaffold1360 GLEAN mRNA 165853 165916 0.999286 - . ID=CGI_10022634; scaffold1360 TRF Tandem_Repeat 165853 165916 128 + . . scaffold1360 GLEAN mRNA 167863 168076 0.999286 - . ID=CGI_10022634; scaffold1360 TRF Tandem_Repeat 167863 168076 295 + . . scaffold1360 GLEAN mRNA 168440 168960 0.999286 - . ID=CGI_10022634; scaffold1360 TRF Tandem_Repeat 168440 168960 272 + . . scaffold1360 GLEAN mRNA 168440 168964 0.999286 - . ID=CGI_10022634; scaffold1360 TRF Tandem_Repeat 168440 168964 316 + . . scaffold1360 GLEAN mRNA 176246 176359 1 - . ID=CGI_10022635; scaffold1360 TRF Tandem_Repeat 176246 176359 102 + . . scaffold1360 GLEAN mRNA 196831 196859 0.801621 + . ID=CGI_10022636; scaffold1360 TRF Tandem_Repeat 196831 196859 58 + . . scaffold1360 GLEAN mRNA 200400 200432 0.801621 + . ID=CGI_10022636; scaffold1360 TRF Tandem_Repeat 200400 200432 66 + . . scaffold1360 GLEAN mRNA 200660 200689 0.801621 + . ID=CGI_10022636; scaffold1360 TRF Tandem_Repeat 200660 200689 60 + . . scaffold1360 GLEAN mRNA 206307 206354 0.801621 + . ID=CGI_10022636; scaffold1360 TRF Tandem_Repeat 206307 206354 87 + . . scaffold1360 GLEAN mRNA 207503 207532 0.801621 + . ID=CGI_10022636; scaffold1360 TRF Tandem_Repeat 207503 207532 60 + . . scaffold1360 GLEAN mRNA 200400 200432 0.701856 - . ID=CGI_10022637; scaffold1360 TRF Tandem_Repeat 200400 200432 66 + . . scaffold1360 GLEAN mRNA 200660 200689 0.701856 - . ID=CGI_10022637; scaffold1360 TRF Tandem_Repeat 200660 200689 60 + . . scaffold1360 GLEAN mRNA 206307 206354 0.701856 - . ID=CGI_10022637; scaffold1360 TRF Tandem_Repeat 206307 206354 87 + . . scaffold1360 GLEAN mRNA 207503 207532 0.701856 - . ID=CGI_10022637; scaffold1360 TRF Tandem_Repeat 207503 207532 60 + . . scaffold1360 GLEAN mRNA 210892 211130 0.701856 - . ID=CGI_10022637; scaffold1360 TRF Tandem_Repeat 210892 211130 359 + . . scaffold1360 GLEAN mRNA 211248 212073 0.701856 - . ID=CGI_10022637; scaffold1360 TRF Tandem_Repeat 211248 212073 716 + . . scaffold1360 GLEAN mRNA 220647 220686 0.701856 - . ID=CGI_10022637; scaffold1360 TRF Tandem_Repeat 220647 220686 53 + . . scaffold1360 GLEAN mRNA 220717 223053 0.701856 - . ID=CGI_10022637; scaffold1360 TRF Tandem_Repeat 220717 223053 2380 + . . scaffold1360 GLEAN mRNA 220717 223014 0.701856 - . ID=CGI_10022637; scaffold1360 TRF Tandem_Repeat 220717 223014 2843 + . . scaffold1360 GLEAN mRNA 221675 221730 0.701856 - . ID=CGI_10022637; scaffold1360 TRF Tandem_Repeat 221675 221730 67 + . . scaffold1360 GLEAN mRNA 224553 225640 0.701856 - . ID=CGI_10022637; scaffold1360 TRF Tandem_Repeat 224553 225640 1675 + . . scaffold1360 GLEAN mRNA 230834 231297 0.701856 - . ID=CGI_10022637; scaffold1360 TRF Tandem_Repeat 230834 231297 811 + . . scaffold1360 GLEAN mRNA 254786 254841 0.999979 - . ID=CGI_10022641; scaffold1360 TRF Tandem_Repeat 254786 254841 67 + . . scaffold1360 GLEAN mRNA 267761 268395 0.478993 + . ID=CGI_10022642; scaffold1360 TRF Tandem_Repeat 267761 268395 792 + . . scaffold1360 GLEAN mRNA 267761 268394 0.478993 + . ID=CGI_10022642; scaffold1360 TRF Tandem_Repeat 267761 268394 877 + . . scaffold1360 GLEAN mRNA 288777 289046 0.999939 + . ID=CGI_10022643; scaffold1360 TRF Tandem_Repeat 288777 289046 330 + . . scaffold1360 GLEAN mRNA 290187 290330 0.999939 + . ID=CGI_10022643; scaffold1360 TRF Tandem_Repeat 290187 290330 85 + . . scaffold1360 GLEAN mRNA 290468 290731 0.999939 + . ID=CGI_10022643; scaffold1360 TRF Tandem_Repeat 290468 290731 492 + . . scaffold1360 GLEAN mRNA 290499 290716 0.999939 + . ID=CGI_10022643; scaffold1360 TRF Tandem_Repeat 290499 290716 190 + . . scaffold1360 GLEAN mRNA 293124 293148 0.999939 + . ID=CGI_10022643; scaffold1360 TRF Tandem_Repeat 293124 293148 50 + . . scaffold1360 GLEAN mRNA 298226 298282 0.999939 + . ID=CGI_10022643; scaffold1360 TRF Tandem_Repeat 298226 298282 114 + . . scaffold1360 GLEAN mRNA 298381 298420 0.999939 + . ID=CGI_10022643; scaffold1360 TRF Tandem_Repeat 298381 298420 80 + . . scaffold1360 GLEAN mRNA 299376 299413 0.999939 + . ID=CGI_10022643; scaffold1360 TRF Tandem_Repeat 299376 299413 51 + . . scaffold1360 GLEAN mRNA 304734 304796 0.999395 - . ID=CGI_10022645; scaffold1360 TRF Tandem_Repeat 304734 304796 119 + . . scaffold1360 GLEAN mRNA 312393 312429 0.531017 - . ID=CGI_10022646; scaffold1360 TRF Tandem_Repeat 312393 312429 74 + . . scaffold1360 GLEAN mRNA 315387 315438 0.531017 - . ID=CGI_10022646; scaffold1360 TRF Tandem_Repeat 315387 315438 104 + . . scaffold1360 GLEAN mRNA 319117 319180 0.531017 - . ID=CGI_10022646; scaffold1360 TRF Tandem_Repeat 319117 319180 128 + . . scaffold1360 GLEAN mRNA 321855 321901 0.531017 - . ID=CGI_10022646; scaffold1360 TRF Tandem_Repeat 321855 321901 94 + . . scaffold1360 GLEAN mRNA 322497 322553 0.531017 - . ID=CGI_10022646; scaffold1360 TRF Tandem_Repeat 322497 322553 114 + . . scaffold1360 GLEAN mRNA 325109 325182 0.531017 - . ID=CGI_10022646; scaffold1360 TRF Tandem_Repeat 325109 325182 139 + . . scaffold1360 GLEAN mRNA 442677 442726 0.939893 + . ID=CGI_10022655; scaffold1360 TRF Tandem_Repeat 442677 442726 66 + . . scaffold1360 GLEAN mRNA 519219 519255 0.465285 - . ID=CGI_10022657; scaffold1360 TRF Tandem_Repeat 519219 519255 74 + . . scaffold1360 GLEAN mRNA 519828 519873 0.465285 - . ID=CGI_10022657; scaffold1360 TRF Tandem_Repeat 519828 519873 58 + . . scaffold1360 GLEAN mRNA 522736 522812 0.465285 - . ID=CGI_10022657; scaffold1360 TRF Tandem_Repeat 522736 522812 70 + . . scaffold1360 GLEAN mRNA 522733 522808 0.465285 - . ID=CGI_10022657; scaffold1360 TRF Tandem_Repeat 522733 522808 62 + . . scaffold1360 GLEAN mRNA 528902 528933 0.465285 - . ID=CGI_10022657; scaffold1360 TRF Tandem_Repeat 528902 528933 55 + . . scaffold1360 GLEAN mRNA 529489 529525 0.465285 - . ID=CGI_10022657; scaffold1360 TRF Tandem_Repeat 529489 529525 65 + . . scaffold1360 GLEAN mRNA 560408 560435 0.990124 + . ID=CGI_10022659; scaffold1360 TRF Tandem_Repeat 560408 560435 56 + . . scaffold1360 GLEAN mRNA 566391 566859 0.990124 + . ID=CGI_10022659; scaffold1360 TRF Tandem_Repeat 566391 566859 613 + . . scaffold1360 GLEAN mRNA 566386 566875 0.990124 + . ID=CGI_10022659; scaffold1360 TRF Tandem_Repeat 566386 566875 467 + . . scaffold1360 GLEAN mRNA 694439 694499 0.999999 - . ID=CGI_10022667; scaffold1360 TRF Tandem_Repeat 694439 694499 113 + . . scaffold1360 GLEAN mRNA 709377 709673 0.999999 - . ID=CGI_10022667; scaffold1360 TRF Tandem_Repeat 709377 709673 168 + . . scaffold1360 GLEAN mRNA 709377 709677 0.999999 - . ID=CGI_10022667; scaffold1360 TRF Tandem_Repeat 709377 709677 498 + . . scaffold1360 GLEAN mRNA 715305 715353 0.999999 - . ID=CGI_10022667; scaffold1360 TRF Tandem_Repeat 715305 715353 82 + . . scaffold1360 GLEAN mRNA 716709 717079 0.999999 - . ID=CGI_10022667; scaffold1360 TRF Tandem_Repeat 716709 717079 343 + . . scaffold1360 GLEAN mRNA 736941 736988 0.95405 + . ID=CGI_10022670; scaffold1360 TRF Tandem_Repeat 736941 736988 87 + . . scaffold1360 GLEAN mRNA 734374 734751 0.95405 + . ID=CGI_10022670; scaffold1360 WUBlastX LINE_RTE-X 734374 734751 144 - . . scaffold1360 GLEAN mRNA 734404 734712 0.95405 + . ID=CGI_10022670; scaffold1360 WUBlastX LINE_RTE-X 734404 734712 176 - . . scaffold1360 GLEAN mRNA 734269 734706 0.95405 + . ID=CGI_10022670; scaffold1360 WUBlastX LINE_RTE-X 734269 734706 141 - . . scaffold1360 GLEAN mRNA 766987 767131 0.99818 + . ID=CGI_10022672; scaffold1360 TRF Tandem_Repeat 766987 767131 121 + . . scaffold1360 GLEAN mRNA 767439 767468 0.99818 + . ID=CGI_10022672; scaffold1360 TRF Tandem_Repeat 767439 767468 60 + . . scaffold364 GLEAN mRNA 19152 19193 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 19152 19193 61 + . . scaffold364 GLEAN mRNA 19286 19325 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 19286 19325 80 + . . scaffold364 GLEAN mRNA 25597 25626 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 25597 25626 60 + . . scaffold364 GLEAN mRNA 33978 34536 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 33978 34536 940 + . . scaffold364 GLEAN mRNA 39806 39848 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 39806 39848 86 + . . scaffold364 GLEAN mRNA 39859 40716 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 39859 40716 1185 + . . scaffold364 GLEAN mRNA 48849 48917 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 48849 48917 57 + . . scaffold364 GLEAN mRNA 51139 51341 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 51139 51341 354 + . . scaffold364 GLEAN mRNA 51361 51391 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 51361 51391 62 + . . scaffold364 GLEAN mRNA 60853 61026 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 60853 61026 240 + . . scaffold364 GLEAN mRNA 61139 61288 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 61139 61288 219 + . . scaffold364 GLEAN mRNA 63515 63675 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 63515 63675 121 + . . scaffold364 GLEAN mRNA 63517 63712 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 63517 63712 137 + . . scaffold364 GLEAN mRNA 63957 64084 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 63957 64084 85 + . . scaffold364 GLEAN mRNA 64442 64574 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 64442 64574 144 + . . scaffold364 GLEAN mRNA 51736 51981 0.812692 + . ID=CGI_10022675; scaffold364 WUBlastX LINE_RTE-X 51736 51981 118 - . . scaffold364 GLEAN mRNA 79654 79684 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 79654 79684 62 + . . scaffold364 GLEAN mRNA 80094 80202 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 80094 80202 209 + . . scaffold364 GLEAN mRNA 99379 99409 1 + . ID=CGI_10022677; scaffold364 TRF Tandem_Repeat 99379 99409 62 + . . scaffold364 GLEAN mRNA 99819 99930 1 + . ID=CGI_10022677; scaffold364 TRF Tandem_Repeat 99819 99930 188 + . . scaffold364 GLEAN mRNA 99819 100041 1 + . ID=CGI_10022677; scaffold364 TRF Tandem_Repeat 99819 100041 302 + . . scaffold364 GLEAN mRNA 99929 100041 1 + . ID=CGI_10022677; scaffold364 TRF Tandem_Repeat 99929 100041 208 + . . scaffold364 GLEAN mRNA 110274 110311 0.530283 + . ID=CGI_10022678; scaffold364 TRF Tandem_Repeat 110274 110311 58 + . . scaffold364 GLEAN mRNA 110516 111437 0.530283 + . ID=CGI_10022678; scaffold364 TRF Tandem_Repeat 110516 111437 1375 + . . scaffold364 GLEAN mRNA 120878 122050 0.999999 + . ID=CGI_10022679; scaffold364 TRF Tandem_Repeat 120878 122050 1730 + . . scaffold364 GLEAN mRNA 127400 127483 0.999971 - . ID=CGI_10022680; scaffold364 TRF Tandem_Repeat 127400 127483 73 + . . scaffold364 GLEAN mRNA 128779 128862 0.999971 - . ID=CGI_10022680; scaffold364 TRF Tandem_Repeat 128779 128862 73 + . . scaffold364 GLEAN mRNA 135759 135813 0.993898 + . ID=CGI_10022681; scaffold364 TRF Tandem_Repeat 135759 135813 74 + . . scaffold364 GLEAN mRNA 135760 135813 0.993898 + . ID=CGI_10022681; scaffold364 TRF Tandem_Repeat 135760 135813 90 + . . scaffold364 GLEAN mRNA 135983 136675 0.993898 + . ID=CGI_10022681; scaffold364 TRF Tandem_Repeat 135983 136675 1052 + . . scaffold364 GLEAN mRNA 183524 183703 0.999994 + . ID=CGI_10022683; scaffold364 WUBlastX LINE_RTE-BovB 183524 183703 89 - . . scaffold364 GLEAN mRNA 272326 272370 0.992105 + . ID=CGI_10022688; scaffold364 TRF Tandem_Repeat 272326 272370 72 + . . scaffold364 GLEAN mRNA 272326 272373 0.992105 + . ID=CGI_10022688; scaffold364 TRF Tandem_Repeat 272326 272373 51 + . . scaffold364 GLEAN mRNA 276152 276194 0.992105 + . ID=CGI_10022688; scaffold364 TRF Tandem_Repeat 276152 276194 86 + . . scaffold364 GLEAN mRNA 308971 309138 0.924605 - . ID=CGI_10022689; scaffold364 WUBlastX DNA_Zator 308971 309138 54 - . . scaffold364 GLEAN mRNA 309609 309788 0.924605 - . ID=CGI_10022689; scaffold364 WUBlastX DNA_Zator 309609 309788 57 - . . scaffold364 GLEAN mRNA 309939 312758 0.924605 - . ID=CGI_10022689; scaffold364 WUBlastX DNA_Zator 309939 312758 1396 - . . scaffold364 GLEAN mRNA 354782 355231 0.333666 + . ID=CGI_10022692; scaffold364 WUBlastX DNA_Crypton 354782 355231 68 + . . scaffold364 GLEAN mRNA 429207 429249 0.999009 - . ID=CGI_10022694; scaffold364 TRF Tandem_Repeat 429207 429249 86 + . . scaffold364 GLEAN mRNA 436652 436899 0.999009 - . ID=CGI_10022694; scaffold364 TRF Tandem_Repeat 436652 436899 460 + . . scaffold364 GLEAN mRNA 443986 444035 0.504908 - . ID=CGI_10022695; scaffold364 TRF Tandem_Repeat 443986 444035 100 + . . scaffold364 GLEAN mRNA 474412 474474 1 + . ID=CGI_10022697; scaffold364 TRF Tandem_Repeat 474412 474474 112 + . . scaffold364 GLEAN mRNA 518654 519262 1 - . ID=CGI_10022701; scaffold364 TRF Tandem_Repeat 518654 519262 789 + . . scaffold364 GLEAN mRNA 546584 546621 0.907038 - . ID=CGI_10022703; scaffold364 TRF Tandem_Repeat 546584 546621 67 + . . scaffold364 GLEAN mRNA 554426 554521 0.907038 - . ID=CGI_10022703; scaffold364 TRF Tandem_Repeat 554426 554521 185 + . . scaffold364 GLEAN mRNA 615049 615098 0.982473 + . ID=CGI_10022705; scaffold364 TRF Tandem_Repeat 615049 615098 73 + . . scaffold364 GLEAN mRNA 649839 650560 1 + . ID=CGI_10022708; scaffold364 TRF Tandem_Repeat 649839 650560 1047 + . . scaffold364 GLEAN mRNA 715375 715635 0.276063 - . ID=CGI_10022710; scaffold364 WUBlastX DNA_Crypton 715258 715635 69 - . . scaffold364 GLEAN mRNA 716389 716417 1 - . ID=CGI_10022711; scaffold364 WUBlastX DNA_Crypton 716190 716417 21 - . . scaffold364 GLEAN mRNA 716410 716484 1 - . ID=CGI_10022711; scaffold364 WUBlastX DNA_Crypton 716410 716484 28 - . . scaffold364 GLEAN mRNA 774048 775084 0.703201 - . ID=CGI_10022712; scaffold364 TRF Tandem_Repeat 774048 775084 1570 + . . scaffold364 GLEAN mRNA 775246 775310 0.703201 - . ID=CGI_10022712; scaffold364 TRF Tandem_Repeat 775246 775310 96 + . . scaffold364 GLEAN mRNA 775249 775311 0.703201 - . ID=CGI_10022712; scaffold364 TRF Tandem_Repeat 775249 775311 74 + . . scaffold364 GLEAN mRNA 778127 778189 0.703201 - . ID=CGI_10022712; scaffold364 TRF Tandem_Repeat 778127 778189 54 + . . scaffold364 GLEAN mRNA 778126 778189 0.703201 - . ID=CGI_10022712; scaffold364 TRF Tandem_Repeat 778126 778189 74 + . . scaffold365 GLEAN mRNA 36354 36419 0.992791 + . ID=CGI_10022713; scaffold365 TRF Tandem_Repeat 36354 36419 71 + . . scaffold365 GLEAN mRNA 36353 36419 0.992791 + . ID=CGI_10022713; scaffold365 TRF Tandem_Repeat 36353 36419 82 + . . scaffold365 GLEAN mRNA 36353 36411 0.992791 + . ID=CGI_10022713; scaffold365 TRF Tandem_Repeat 36353 36411 84 + . . scaffold365 GLEAN mRNA 44378 44432 0.992791 + . ID=CGI_10022713; scaffold365 TRF Tandem_Repeat 44378 44432 110 + . . scaffold365 GLEAN mRNA 52341 52370 0.992791 + . ID=CGI_10022713; scaffold365 TRF Tandem_Repeat 52341 52370 60 + . . scaffold365 GLEAN mRNA 52374 52410 0.992791 + . ID=CGI_10022713; scaffold365 TRF Tandem_Repeat 52374 52410 74 + . . scaffold365 GLEAN mRNA 65168 65217 0.999351 - . ID=CGI_10022715; scaffold365 TRF Tandem_Repeat 65168 65217 100 + . . scaffold365 GLEAN mRNA 80874 81715 0.919357 - . ID=CGI_10022718; scaffold365 TRF Tandem_Repeat 80874 81715 1108 + . . scaffold365 GLEAN mRNA 80320 80490 0.919357 - . ID=CGI_10022718; scaffold365 WUBlastX DNA_Merlin 80320 80490 63 + . . scaffold365 GLEAN mRNA 81897 81941 0.919357 - . ID=CGI_10022718; scaffold365 TRF Tandem_Repeat 81897 81941 54 + . . scaffold365 GLEAN mRNA 91379 91475 0.816232 - . ID=CGI_10022719; scaffold365 TRF Tandem_Repeat 91379 91475 126 + . . scaffold365 GLEAN mRNA 94573 95321 0.399345 - . ID=CGI_10022720; scaffold365 TRF Tandem_Repeat 94573 95321 866 + . . scaffold365 GLEAN mRNA 96778 96811 0.399345 - . ID=CGI_10022720; scaffold365 TRF Tandem_Repeat 96778 96811 59 + . . scaffold365 GLEAN mRNA 100747 101727 0.37257 - . ID=CGI_10022721; scaffold365 TRF Tandem_Repeat 100747 101727 738 + . . scaffold365 GLEAN mRNA 109587 109830 0.37257 - . ID=CGI_10022721; scaffold365 TRF Tandem_Repeat 109587 109830 194 + . . scaffold365 GLEAN mRNA 137135 137205 0.37257 - . ID=CGI_10022721; scaffold365 TRF Tandem_Repeat 137135 137205 61 + . . scaffold365 GLEAN mRNA 140318 140533 0.37257 - . ID=CGI_10022721; scaffold365 TRF Tandem_Repeat 140318 140533 166 + . . scaffold365 GLEAN mRNA 179883 179962 0.996603 - . ID=CGI_10022722; scaffold365 TRF Tandem_Repeat 179883 179962 108 + . . scaffold365 GLEAN mRNA 170013 170150 0.996603 - . ID=CGI_10022722; scaffold365 WUBlastX LINE_RTE-X 170013 170150 31 - . . scaffold365 GLEAN mRNA 186591 187103 0.996603 - . ID=CGI_10022722; scaffold365 WUBlastX LINE_RTE-X 186591 187103 57 - . . scaffold365 GLEAN mRNA 186609 186935 0.996603 - . ID=CGI_10022722; scaffold365 WUBlastX LINE_RTE-X 186609 186935 101 - . . scaffold365 GLEAN mRNA 186678 187031 0.996603 - . ID=CGI_10022722; scaffold365 WUBlastX LINE_RTE-X 186678 187031 94 - . . scaffold365 GLEAN mRNA 195296 195725 1 - . ID=CGI_10022723; scaffold365 TRF Tandem_Repeat 195296 195725 618 + . . scaffold365 GLEAN mRNA 246671 246719 0.709643 + . ID=CGI_10022724; scaffold365 TRF Tandem_Repeat 246671 246719 80 + . . scaffold365 GLEAN mRNA 250956 251787 0.709643 + . ID=CGI_10022724; scaffold365 TRF Tandem_Repeat 250956 251787 680 + . . scaffold365 GLEAN mRNA 252133 253446 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX LTR_Pao 252133 253446 575 + . . scaffold365 GLEAN mRNA 254938 255099 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX LTR_Pao 254938 255099 56 + . . scaffold365 GLEAN mRNA 253669 253857 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX LTR_Pao 253669 253857 29 + . . scaffold365 GLEAN mRNA 253761 253859 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX LTR_Pao 253761 253859 32 + . . scaffold365 GLEAN mRNA 251830 251889 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX LTR_Pao 251830 251889 28 + . . scaffold365 GLEAN mRNA 250496 250693 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX LTR_Pao 250496 250693 118 + . . scaffold365 GLEAN mRNA 248785 250491 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX LTR_Pao 248785 250491 265 + . . scaffold365 GLEAN mRNA 248415 248756 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX LTR_Pao 248415 248756 60 + . . scaffold365 GLEAN mRNA 251995 252378 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX LTR_Pao 251995 252378 29 + . . scaffold365 GLEAN mRNA 253983 254939 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX LTR_Pao 253983 254939 371 + . . scaffold365 GLEAN mRNA 267516 267602 0.709643 + . ID=CGI_10022724; scaffold365 TRF Tandem_Repeat 267516 267602 165 + . . scaffold365 GLEAN mRNA 275497 276594 0.709643 + . ID=CGI_10022724; scaffold365 TRF Tandem_Repeat 275497 276594 1008 + . . scaffold365 GLEAN mRNA 271999 272205 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX RC_Helitron 271999 272205 88 + . . scaffold365 GLEAN mRNA 271259 271690 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX RC_Helitron 271259 271690 73 + . . scaffold365 GLEAN mRNA 285656 285739 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX DNA_Kolobok 285656 285739 32 + . . scaffold365 GLEAN mRNA 284594 284701 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX DNA_Kolobok 284594 284701 36 + . . scaffold365 GLEAN mRNA 286218 286436 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX DNA_Kolobok 286218 286436 90 + . . scaffold365 GLEAN mRNA 285171 285419 0.709643 + . ID=CGI_10022724; scaffold365 WUBlastX DNA_Kolobok 285171 285419 104 + . . scaffold365 GLEAN mRNA 293699 293773 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 293699 293773 36 + . . scaffold365 GLEAN mRNA 294610 294786 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 294610 294786 47 + . . scaffold365 GLEAN mRNA 293350 293604 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 293350 293604 150 + . . scaffold365 GLEAN mRNA 294604 294744 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 294604 294744 48 + . . scaffold365 GLEAN mRNA 293828 294016 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 293828 294016 25 + . . scaffold365 GLEAN mRNA 292970 293254 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 292970 293254 150 + . . scaffold365 GLEAN mRNA 294128 294349 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 294128 294349 67 + . . scaffold365 GLEAN mRNA 295069 295311 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 295069 295311 103 + . . scaffold365 GLEAN mRNA 310900 310941 0.8898 + . ID=CGI_10022728; scaffold365 TRF Tandem_Repeat 310900 310941 84 + . . scaffold365 GLEAN mRNA 362040 362087 0.999572 - . ID=CGI_10022731; scaffold365 TRF Tandem_Repeat 362040 362087 96 + . . scaffold365 GLEAN mRNA 383623 383669 1 - . ID=CGI_10022732; scaffold365 TRF Tandem_Repeat 383623 383669 94 + . . scaffold365 GLEAN mRNA 436167 436219 0.353831 - . ID=CGI_10022735; scaffold365 TRF Tandem_Repeat 436167 436219 54 + . . scaffold365 GLEAN mRNA 446318 446872 1 - . ID=CGI_10022738; scaffold365 WUBlastX LINE_L1 446318 446872 22 - . . scaffold365 GLEAN mRNA 446102 446746 1 - . ID=CGI_10022738; scaffold365 WUBlastX LINE_I 446102 446746 26 - . . scaffold365 GLEAN mRNA 463478 463676 0.998956 - . ID=CGI_10022739; scaffold365 TRF Tandem_Repeat 463478 463676 118 + . . scaffold365 GLEAN mRNA 468104 468149 0.998956 - . ID=CGI_10022739; scaffold365 TRF Tandem_Repeat 468104 468149 83 + . . scaffold365 GLEAN mRNA 479760 480502 0.999676 - . ID=CGI_10022740; scaffold365 TRF Tandem_Repeat 479760 480502 988 + . . scaffold365 GLEAN mRNA 511680 511736 0.998505 + . ID=CGI_10022741; scaffold365 TRF Tandem_Repeat 511680 511736 107 + . . scaffold365 GLEAN mRNA 528982 529027 0.999166 - . ID=CGI_10022742; scaffold365 TRF Tandem_Repeat 528982 529027 92 + . . scaffold365 GLEAN mRNA 560111 560152 0.999166 - . ID=CGI_10022742; scaffold365 TRF Tandem_Repeat 560111 560152 77 + . . scaffold365 GLEAN mRNA 560610 560642 0.999166 - . ID=CGI_10022742; scaffold365 TRF Tandem_Repeat 560610 560642 66 + . . scaffold365 GLEAN mRNA 573585 573674 0.479657 + . ID=CGI_10022743; scaffold365 WUBlastX LTR_Pao 573585 573674 20 + . . scaffold365 GLEAN mRNA 580897 581310 0.479657 + . ID=CGI_10022743; scaffold365 WUBlastX DNA_IS4EU 580897 581310 54 - . . scaffold365 GLEAN mRNA 580621 581292 0.479657 + . ID=CGI_10022743; scaffold365 WUBlastX DNA_Kolobok-Hyd 580621 581292 36 - . . scaffold365 GLEAN mRNA 581478 581558 0.479657 + . ID=CGI_10022743; scaffold365 WUBlastX DNA_Kolobok-Hyd 581478 581558 22 - . . scaffold365 GLEAN mRNA 580897 581310 0.999968 - . ID=CGI_10022744; scaffold365 WUBlastX DNA_IS4EU 580897 581310 54 - . . scaffold365 GLEAN mRNA 580621 581292 0.999968 - . ID=CGI_10022744; scaffold365 WUBlastX DNA_Kolobok-Hyd 580621 581292 36 - . . scaffold365 GLEAN mRNA 621402 621444 0.999999 - . ID=CGI_10022746; scaffold365 TRF Tandem_Repeat 621402 621444 86 + . . scaffold365 GLEAN mRNA 623959 624092 0.999999 - . ID=CGI_10022746; scaffold365 TRF Tandem_Repeat 623959 624092 105 + . . scaffold365 GLEAN mRNA 628275 628316 0.999999 - . ID=CGI_10022746; scaffold365 TRF Tandem_Repeat 628275 628316 52 + . . scaffold365 GLEAN mRNA 665597 665659 0.980063 + . ID=CGI_10022748; scaffold365 TRF Tandem_Repeat 665597 665659 119 + . . scaffold365 GLEAN mRNA 687918 687986 1 + . ID=CGI_10022751; scaffold365 TRF Tandem_Repeat 687918 687986 138 + . . scaffold365 GLEAN mRNA 701196 701246 0.888354 - . ID=CGI_10022752; scaffold365 TRF Tandem_Repeat 701196 701246 102 + . . scaffold365 GLEAN mRNA 698815 699693 0.888354 - . ID=CGI_10022752; scaffold365 WUBlastX DNA_TcMar-Tc1 698815 699693 423 - . . scaffold365 GLEAN mRNA 708181 708245 0.888354 - . ID=CGI_10022752; scaffold365 TRF Tandem_Repeat 708181 708245 58 + . . scaffold365 GLEAN mRNA 709232 709998 0.888354 - . ID=CGI_10022752; scaffold365 TRF Tandem_Repeat 709232 709998 963 + . . scaffold365 GLEAN mRNA 710110 710147 0.888354 - . ID=CGI_10022752; scaffold365 TRF Tandem_Repeat 710110 710147 58 + . . scaffold365 GLEAN mRNA 711826 711855 0.888354 - . ID=CGI_10022752; scaffold365 TRF Tandem_Repeat 711826 711855 60 + . . scaffold365 GLEAN mRNA 701196 701246 0.999999 + . ID=CGI_10022753; scaffold365 TRF Tandem_Repeat 701196 701246 102 + . . scaffold365 GLEAN mRNA 741824 741914 0.999676 - . ID=CGI_10022756; scaffold365 TRF Tandem_Repeat 741824 741914 65 + . . scaffold443 GLEAN mRNA 159961 159985 1 - . ID=CGI_10022763; scaffold443 TRF Tandem_Repeat 159961 159985 50 + . . scaffold443 GLEAN mRNA 228421 228882 1 - . ID=CGI_10022766; scaffold443 TRF Tandem_Repeat 228421 228882 735 + . . scaffold443 GLEAN mRNA 229498 229566 1 - . ID=CGI_10022766; scaffold443 TRF Tandem_Repeat 229498 229566 108 + . . scaffold443 GLEAN mRNA 260971 261025 0.451451 + . ID=CGI_10022768; scaffold443 TRF Tandem_Repeat 260971 261025 85 + . . scaffold443 GLEAN mRNA 312223 312309 0.999259 + . ID=CGI_10022771; scaffold443 TRF Tandem_Repeat 312223 312309 120 + . . scaffold443 GLEAN mRNA 315714 315761 0.999259 + . ID=CGI_10022771; scaffold443 TRF Tandem_Repeat 315714 315761 96 + . . scaffold443 GLEAN mRNA 330618 330651 0.775532 + . ID=CGI_10022773; scaffold443 TRF Tandem_Repeat 330618 330651 50 + . . scaffold443 GLEAN mRNA 331243 332302 0.775532 + . ID=CGI_10022773; scaffold443 TRF Tandem_Repeat 331243 332302 2093 + . . scaffold443 GLEAN mRNA 332859 334181 0.775532 + . ID=CGI_10022773; scaffold443 TRF Tandem_Repeat 332859 334181 1760 + . . scaffold443 GLEAN mRNA 334427 335596 0.775532 + . ID=CGI_10022773; scaffold443 TRF Tandem_Repeat 334427 335596 1701 + . . scaffold443 GLEAN mRNA 336332 336728 0.775532 + . ID=CGI_10022773; scaffold443 TRF Tandem_Repeat 336332 336728 396 + . . scaffold443 GLEAN mRNA 337093 337127 0.775532 + . ID=CGI_10022773; scaffold443 TRF Tandem_Repeat 337093 337127 70 + . . scaffold443 GLEAN mRNA 354099 354239 0.996236 - . ID=CGI_10022774; scaffold443 TRF Tandem_Repeat 354099 354239 221 + . . scaffold443 GLEAN mRNA 354102 354323 0.996236 - . ID=CGI_10022774; scaffold443 TRF Tandem_Repeat 354102 354323 258 + . . scaffold443 GLEAN mRNA 354253 354383 0.996236 - . ID=CGI_10022774; scaffold443 TRF Tandem_Repeat 354253 354383 154 + . . scaffold443 GLEAN mRNA 404803 404834 0.212109 - . ID=CGI_10022775; scaffold443 TRF Tandem_Repeat 404803 404834 55 + . . scaffold443 GLEAN mRNA 408733 409029 0.212109 - . ID=CGI_10022775; scaffold443 WUBlastX LINE_RTE-X 408733 409029 48 - . . scaffold443 GLEAN mRNA 408718 408921 0.212109 - . ID=CGI_10022775; scaffold443 WUBlastX LINE_RTE-X 408718 408921 65 - . . scaffold443 GLEAN mRNA 408757 408933 0.212109 - . ID=CGI_10022775; scaffold443 WUBlastX LINE_RTE-X 408757 408933 72 - . . scaffold443 GLEAN mRNA 418239 418278 0.212109 - . ID=CGI_10022775; scaffold443 TRF Tandem_Repeat 418239 418278 80 + . . scaffold443 GLEAN mRNA 571514 572063 1 - . ID=CGI_10022779; scaffold443 TRF Tandem_Repeat 571514 572063 577 + . . scaffold443 GLEAN mRNA 571514 572063 1 - . ID=CGI_10022779; scaffold443 TRF Tandem_Repeat 571514 572063 554 + . . scaffold443 GLEAN mRNA 599684 600181 1 - . ID=CGI_10022780; scaffold443 WUBlastX DNA_Crypton 599684 600181 24 + . . scaffold443 GLEAN mRNA 674692 674744 0.934337 - . ID=CGI_10022783; scaffold443 TRF Tandem_Repeat 674692 674744 88 + . . scaffold443 GLEAN mRNA 689074 689110 0.184692 + . ID=CGI_10022785; scaffold443 TRF Tandem_Repeat 689074 689110 56 + . . scaffold443 GLEAN mRNA 696301 696853 0.184692 + . ID=CGI_10022785; scaffold443 TRF Tandem_Repeat 696301 696853 314 + . . scaffold443 GLEAN mRNA 696397 696865 0.184692 + . ID=CGI_10022785; scaffold443 TRF Tandem_Repeat 696397 696865 609 + . . scaffold443 GLEAN mRNA 711377 711435 0.889836 - . ID=CGI_10022786; scaffold443 TRF Tandem_Repeat 711377 711435 118 + . . scaffold443 GLEAN mRNA 710054 710524 0.889836 - . ID=CGI_10022786; scaffold443 WUBlastX LTR_Gypsy 710054 710524 50 - . . scaffold443 GLEAN mRNA 719826 720468 0.999929 - . ID=CGI_10022787; scaffold443 TRF Tandem_Repeat 719826 720468 543 + . . scaffold443 GLEAN mRNA 719826 720468 0.999929 - . ID=CGI_10022787; scaffold443 TRF Tandem_Repeat 719826 720468 613 + . . scaffold443 GLEAN mRNA 719826 720468 0.999929 - . ID=CGI_10022787; scaffold443 TRF Tandem_Repeat 719826 720468 387 + . . scaffold443 GLEAN mRNA 742629 742673 1 + . ID=CGI_10022788; scaffold443 TRF Tandem_Repeat 742629 742673 90 + . . scaffold443 GLEAN mRNA 761701 761794 0.457175 + . ID=CGI_10022789; scaffold443 TRF Tandem_Repeat 761701 761794 179 + . . scaffold413 GLEAN mRNA 15197 15388 0.940957 - . ID=CGI_10022791; scaffold413 TRF Tandem_Repeat 15197 15388 119 + . . scaffold413 GLEAN mRNA 15725 16007 0.940957 - . ID=CGI_10022791; scaffold413 TRF Tandem_Repeat 15725 16007 478 + . . scaffold413 GLEAN mRNA 10977 11804 0.940957 - . ID=CGI_10022791; scaffold413 WUBlastX LINE_L1 10977 11804 190 - . . scaffold413 GLEAN mRNA 11824 12150 0.940957 - . ID=CGI_10022791; scaffold413 WUBlastX LINE_L1-Tx1 11824 12150 40 - . . scaffold413 GLEAN mRNA 11815 12069 0.940957 - . ID=CGI_10022791; scaffold413 WUBlastX LINE_L1-Tx1 11815 12069 120 - . . scaffold413 GLEAN mRNA 10697 10900 0.940957 - . ID=CGI_10022791; scaffold413 WUBlastX LINE_L1 10697 10900 22 - . . scaffold413 GLEAN mRNA 10042 10311 0.940957 - . ID=CGI_10022791; scaffold413 WUBlastX LINE_L1-Tx1 10042 10311 22 - . . scaffold413 GLEAN mRNA 16784 17403 0.940957 - . ID=CGI_10022791; scaffold413 TRF Tandem_Repeat 16784 17403 965 + . . scaffold413 GLEAN mRNA 16715 17399 0.940957 - . ID=CGI_10022791; scaffold413 TRF Tandem_Repeat 16715 17399 1020 + . . scaffold413 GLEAN mRNA 20032 20221 0.497504 - . ID=CGI_10022792; scaffold413 TRF Tandem_Repeat 20032 20221 184 + . . scaffold413 GLEAN mRNA 21679 21885 0.497504 - . ID=CGI_10022792; scaffold413 TRF Tandem_Repeat 21679 21885 360 + . . scaffold413 GLEAN mRNA 24998 25198 0.497504 - . ID=CGI_10022792; scaffold413 TRF Tandem_Repeat 24998 25198 267 + . . scaffold413 GLEAN mRNA 24985 25198 0.497504 - . ID=CGI_10022792; scaffold413 TRF Tandem_Repeat 24985 25198 290 + . . scaffold413 GLEAN mRNA 31697 31915 0.497504 - . ID=CGI_10022792; scaffold413 TRF Tandem_Repeat 31697 31915 251 + . . scaffold413 GLEAN mRNA 77703 77736 0.99886 + . ID=CGI_10022793; scaffold413 TRF Tandem_Repeat 77703 77736 68 + . . scaffold413 GLEAN mRNA 138702 138782 0.482983 + . ID=CGI_10022796; scaffold413 TRF Tandem_Repeat 138702 138782 162 + . . scaffold413 GLEAN mRNA 138885 138940 0.482983 + . ID=CGI_10022796; scaffold413 TRF Tandem_Repeat 138885 138940 94 + . . scaffold413 GLEAN mRNA 144660 144982 0.482983 + . ID=CGI_10022796; scaffold413 TRF Tandem_Repeat 144660 144982 170 + . . scaffold413 GLEAN mRNA 144742 144988 0.482983 + . ID=CGI_10022796; scaffold413 TRF Tandem_Repeat 144742 144988 458 + . . scaffold413 GLEAN mRNA 143385 143561 0.482983 + . ID=CGI_10022796; scaffold413 WUBlastX LTR_Ngaro 143385 143561 106 - . . scaffold413 GLEAN mRNA 143638 144108 0.482983 + . ID=CGI_10022796; scaffold413 WUBlastX LTR_Ngaro 143638 144108 128 - . . scaffold413 GLEAN mRNA 143602 143979 0.482983 + . ID=CGI_10022796; scaffold413 WUBlastX LTR_Ngaro 143602 143979 142 - . . scaffold413 GLEAN mRNA 152011 152041 0.482983 + . ID=CGI_10022796; scaffold413 TRF Tandem_Repeat 152011 152041 62 + . . scaffold413 GLEAN mRNA 153576 153619 0.482983 + . ID=CGI_10022796; scaffold413 TRF Tandem_Repeat 153576 153619 88 + . . scaffold413 GLEAN mRNA 205901 205939 0.466271 - . ID=CGI_10022798; scaffold413 TRF Tandem_Repeat 205901 205939 60 + . . scaffold413 GLEAN mRNA 284293 285383 0.751516 - . ID=CGI_10022800; scaffold413 TRF Tandem_Repeat 284293 285383 1761 + . . scaffold413 GLEAN mRNA 291635 291661 0.751516 - . ID=CGI_10022800; scaffold413 TRF Tandem_Repeat 291635 291661 54 + . . scaffold413 GLEAN mRNA 291661 291692 0.751516 - . ID=CGI_10022800; scaffold413 TRF Tandem_Repeat 291661 291692 64 + . . scaffold413 GLEAN mRNA 436783 436877 0.886159 - . ID=CGI_10022803; scaffold413 TRF Tandem_Repeat 436783 436877 120 + . . scaffold413 GLEAN mRNA 437685 437772 0.886159 - . ID=CGI_10022803; scaffold413 TRF Tandem_Repeat 437685 437772 117 + . . scaffold413 GLEAN mRNA 443377 443411 0.886159 - . ID=CGI_10022803; scaffold413 TRF Tandem_Repeat 443377 443411 70 + . . scaffold413 GLEAN mRNA 452751 452814 0.886159 - . ID=CGI_10022803; scaffold413 TRF Tandem_Repeat 452751 452814 128 + . . scaffold413 GLEAN mRNA 470889 471009 0.827983 - . ID=CGI_10022804; scaffold413 TRF Tandem_Repeat 470889 471009 128 + . . scaffold413 GLEAN mRNA 489637 490002 0.995102 - . ID=CGI_10022805; scaffold413 WUBlastX DNA_MuDR 489637 490002 97 - . . scaffold413 GLEAN mRNA 489232 489345 0.995102 - . ID=CGI_10022805; scaffold413 WUBlastX DNA_MuDR 489232 489345 31 - . . scaffold413 GLEAN mRNA 493483 493566 0.999675 + . ID=CGI_10022806; scaffold413 TRF Tandem_Repeat 493483 493566 123 + . . scaffold413 GLEAN mRNA 497005 497168 0.999675 + . ID=CGI_10022806; scaffold413 TRF Tandem_Repeat 497005 497168 73 + . . scaffold413 GLEAN mRNA 497091 497185 0.999675 + . ID=CGI_10022806; scaffold413 TRF Tandem_Repeat 497091 497185 140 + . . scaffold413 GLEAN mRNA 499145 499274 0.999675 + . ID=CGI_10022806; scaffold413 TRF Tandem_Repeat 499145 499274 217 + . . scaffold413 GLEAN mRNA 499299 499876 0.999675 + . ID=CGI_10022806; scaffold413 TRF Tandem_Repeat 499299 499876 511 + . . scaffold413 GLEAN mRNA 500593 500853 0.999675 + . ID=CGI_10022806; scaffold413 TRF Tandem_Repeat 500593 500853 280 + . . scaffold413 GLEAN mRNA 504895 505802 0.999675 + . ID=CGI_10022806; scaffold413 TRF Tandem_Repeat 504895 505802 1160 + . . scaffold413 GLEAN mRNA 505180 505270 0.999675 + . ID=CGI_10022806; scaffold413 TRF Tandem_Repeat 505180 505270 56 + . . scaffold413 GLEAN mRNA 510842 511085 0.999675 + . ID=CGI_10022806; scaffold413 TRF Tandem_Repeat 510842 511085 159 + . . scaffold413 GLEAN mRNA 511121 511239 0.999675 + . ID=CGI_10022806; scaffold413 TRF Tandem_Repeat 511121 511239 120 + . . scaffold413 GLEAN mRNA 511124 511257 0.999675 + . ID=CGI_10022806; scaffold413 TRF Tandem_Repeat 511124 511257 87 + . . scaffold413 GLEAN mRNA 533656 534139 0.546773 - . ID=CGI_10022809; scaffold413 TRF Tandem_Repeat 533656 534139 277 + . . scaffold413 GLEAN mRNA 554487 555197 0.824889 + . ID=CGI_10022810; scaffold413 WUBlastX LTR_Gypsy 554487 555197 84 + . . scaffold413 GLEAN mRNA 553284 553412 0.824889 + . ID=CGI_10022810; scaffold413 WUBlastX LTR_Gypsy 553284 553412 20 + . . scaffold413 GLEAN mRNA 563736 563967 1 - . ID=CGI_10022811; scaffold413 TRF Tandem_Repeat 563736 563967 112 + . . scaffold413 GLEAN mRNA 576047 576080 1 - . ID=CGI_10022813; scaffold413 TRF Tandem_Repeat 576047 576080 68 + . . scaffold413 GLEAN mRNA 604206 604346 0.999671 - . ID=CGI_10022818; scaffold413 TRF Tandem_Repeat 604206 604346 219 + . . scaffold413 GLEAN mRNA 604201 604386 0.999671 - . ID=CGI_10022818; scaffold413 TRF Tandem_Repeat 604201 604386 165 + . . scaffold413 GLEAN mRNA 613585 613641 0.999023 - . ID=CGI_10022819; scaffold413 WUBlastX LTR_Pao 613585 613641 30 + . . scaffold413 GLEAN mRNA 613869 614033 0.999023 - . ID=CGI_10022819; scaffold413 WUBlastX LTR_Pao 613869 614033 146 + . . scaffold413 GLEAN mRNA 613585 613641 1 + . ID=CGI_10022820; scaffold413 WUBlastX LTR_Pao 613585 613641 30 + . . scaffold413 GLEAN mRNA 613869 614033 1 + . ID=CGI_10022820; scaffold413 WUBlastX LTR_Pao 613869 614033 146 + . . scaffold413 GLEAN mRNA 626820 626849 0.909974 - . ID=CGI_10022821; scaffold413 TRF Tandem_Repeat 626820 626849 60 + . . scaffold413 GLEAN mRNA 632733 632770 0.909974 - . ID=CGI_10022821; scaffold413 TRF Tandem_Repeat 632733 632770 76 + . . scaffold413 GLEAN mRNA 634944 635014 0.909974 - . ID=CGI_10022821; scaffold413 TRF Tandem_Repeat 634944 635014 69 + . . scaffold413 GLEAN mRNA 634988 635282 0.909974 - . ID=CGI_10022821; scaffold413 TRF Tandem_Repeat 634988 635282 527 + . . scaffold413 GLEAN mRNA 635257 635329 0.909974 - . ID=CGI_10022821; scaffold413 TRF Tandem_Repeat 635257 635329 53 + . . scaffold413 GLEAN mRNA 635275 635350 0.909974 - . ID=CGI_10022821; scaffold413 TRF Tandem_Repeat 635275 635350 52 + . . scaffold413 GLEAN mRNA 640776 640809 0.909974 - . ID=CGI_10022821; scaffold413 TRF Tandem_Repeat 640776 640809 50 + . . scaffold413 GLEAN mRNA 651485 651525 0.909974 - . ID=CGI_10022821; scaffold413 TRF Tandem_Repeat 651485 651525 82 + . . scaffold413 GLEAN mRNA 654939 654982 0.909974 - . ID=CGI_10022821; scaffold413 TRF Tandem_Repeat 654939 654982 54 + . . scaffold413 GLEAN mRNA 733662 734985 0.897312 - . ID=CGI_10022826; scaffold413 TRF Tandem_Repeat 733662 734985 1139 + . . scaffold413 GLEAN mRNA 733700 733964 0.897312 - . ID=CGI_10022826; scaffold413 TRF Tandem_Repeat 733700 733964 140 + . . scaffold413 GLEAN mRNA 733720 733844 0.897312 - . ID=CGI_10022826; scaffold413 TRF Tandem_Repeat 733720 733844 138 + . . scaffold413 GLEAN mRNA 735698 736549 0.897312 - . ID=CGI_10022826; scaffold413 WUBlastX LINE_L2 735698 736549 31 + . . scaffold413 GLEAN mRNA 736542 736811 0.897312 - . ID=CGI_10022826; scaffold413 WUBlastX LINE_CR1-L2 736542 736811 183 + . . scaffold413 GLEAN mRNA 736088 737068 0.897312 - . ID=CGI_10022826; scaffold413 WUBlastX LINE_CR1-L2 736088 737068 109 + . . scaffold413 GLEAN mRNA 736088 736555 0.897312 - . ID=CGI_10022826; scaffold413 WUBlastX LINE_CR1-L2 736088 736555 186 + . . scaffold413 GLEAN mRNA 736004 736555 0.897312 - . ID=CGI_10022826; scaffold413 WUBlastX LINE_CR1-L2 736004 736555 173 + . . scaffold413 GLEAN mRNA 737068 737349 0.897312 - . ID=CGI_10022826; scaffold413 WUBlastX LINE_L2 737068 737349 101 + . . scaffold896 GLEAN mRNA 45834 45891 0.962391 - . ID=CGI_10022830; scaffold896 TRF Tandem_Repeat 45834 45891 116 + . . scaffold896 GLEAN mRNA 45889 45947 0.962391 - . ID=CGI_10022830; scaffold896 TRF Tandem_Repeat 45889 45947 91 + . . scaffold896 GLEAN mRNA 47541 47795 0.962391 - . ID=CGI_10022830; scaffold896 WUBlastX LINE_L1-Tx1 47541 47795 40 + . . scaffold896 GLEAN mRNA 47842 48237 0.962391 - . ID=CGI_10022830; scaffold896 WUBlastX LINE_L1-Tx1 47842 48237 85 + . . scaffold896 GLEAN mRNA 47812 48321 0.962391 - . ID=CGI_10022830; scaffold896 WUBlastX LINE_L1-Tx1 47812 48321 71 + . . scaffold896 GLEAN mRNA 77604 77664 1 - . ID=CGI_10022831; scaffold896 TRF Tandem_Repeat 77604 77664 122 + . . scaffold896 GLEAN mRNA 91483 91529 0.57033 - . ID=CGI_10022832; scaffold896 TRF Tandem_Repeat 91483 91529 94 + . . scaffold896 GLEAN mRNA 92025 92176 0.57033 - . ID=CGI_10022832; scaffold896 TRF Tandem_Repeat 92025 92176 205 + . . scaffold896 GLEAN mRNA 107971 108327 0.57033 - . ID=CGI_10022832; scaffold896 TRF Tandem_Repeat 107971 108327 417 + . . scaffold896 GLEAN mRNA 107971 108327 0.57033 - . ID=CGI_10022832; scaffold896 TRF Tandem_Repeat 107971 108327 404 + . . scaffold896 GLEAN mRNA 115945 116220 0.57033 - . ID=CGI_10022832; scaffold896 WUBlastX LINE_R2-Hero 115945 116220 42 + . . scaffold896 GLEAN mRNA 115155 115667 0.57033 - . ID=CGI_10022832; scaffold896 WUBlastX LINE_R2-Hero 115155 115667 200 + . . scaffold896 GLEAN mRNA 115673 115981 0.57033 - . ID=CGI_10022832; scaffold896 WUBlastX LINE_R2-Hero 115673 115981 192 + . . scaffold896 GLEAN mRNA 115983 116141 0.57033 - . ID=CGI_10022832; scaffold896 WUBlastX LINE_R2-Hero 115983 116141 48 + . . scaffold896 GLEAN mRNA 115117 115296 0.57033 - . ID=CGI_10022832; scaffold896 WUBlastX LINE_R2-Hero 115117 115296 55 + . . scaffold896 GLEAN mRNA 123486 123629 0.394415 + . ID=CGI_10022834; scaffold896 WUBlastX LINE_RTE-X 123486 123629 46 + . . scaffold896 GLEAN mRNA 123519 123644 0.394415 + . ID=CGI_10022834; scaffold896 WUBlastX LINE_RTE-X 123519 123644 50 + . . scaffold896 GLEAN mRNA 123719 123949 0.394415 + . ID=CGI_10022834; scaffold896 WUBlastX LINE_Proto2 123719 123949 43 + . . scaffold896 GLEAN mRNA 123653 123814 0.394415 + . ID=CGI_10022834; scaffold896 WUBlastX LINE_Jockey 123653 123814 44 + . . scaffold896 GLEAN mRNA 181995 182091 0.839674 + . ID=CGI_10022837; scaffold896 TRF Tandem_Repeat 181995 182091 117 + . . scaffold896 GLEAN mRNA 187652 187699 0.965943 - . ID=CGI_10022838; scaffold896 TRF Tandem_Repeat 187652 187699 96 + . . scaffold896 GLEAN mRNA 200189 200318 0.965943 - . ID=CGI_10022838; scaffold896 TRF Tandem_Repeat 200189 200318 201 + . . scaffold896 GLEAN mRNA 247680 247898 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1-Tx1 247680 247898 42 + . . scaffold896 GLEAN mRNA 247797 247934 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1 247797 247934 36 + . . scaffold896 GLEAN mRNA 247183 247329 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1 247183 247329 42 + . . scaffold896 GLEAN mRNA 247734 247997 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1-Tx1 247734 247997 29 + . . scaffold896 GLEAN mRNA 247207 247377 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1-Tx1 247207 247377 89 + . . scaffold896 GLEAN mRNA 247609 247836 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1-Tx1 247609 247836 75 + . . scaffold896 GLEAN mRNA 248048 248671 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1-Tx1 248048 248671 166 + . . scaffold896 GLEAN mRNA 247207 247746 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1-Tx1 247207 247746 80 + . . scaffold896 GLEAN mRNA 247982 248740 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1 247982 248740 41 + . . scaffold896 GLEAN mRNA 247728 247862 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1-Tx1 247728 247862 51 + . . scaffold896 GLEAN mRNA 301975 302167 0.997833 - . ID=CGI_10022840; scaffold896 TRF Tandem_Repeat 301975 302167 188 + . . scaffold896 GLEAN mRNA 301980 302150 0.997833 - . ID=CGI_10022840; scaffold896 TRF Tandem_Repeat 301980 302150 115 + . . scaffold896 GLEAN mRNA 318967 319144 0.997833 - . ID=CGI_10022840; scaffold896 TRF Tandem_Repeat 318967 319144 82 + . . scaffold896 GLEAN mRNA 320173 320225 0.997833 - . ID=CGI_10022840; scaffold896 TRF Tandem_Repeat 320173 320225 97 + . . scaffold896 GLEAN mRNA 320313 320358 0.997833 - . ID=CGI_10022840; scaffold896 TRF Tandem_Repeat 320313 320358 92 + . . scaffold896 GLEAN mRNA 320554 320620 0.997833 - . ID=CGI_10022840; scaffold896 TRF Tandem_Repeat 320554 320620 134 + . . scaffold896 GLEAN mRNA 320785 320824 0.997833 - . ID=CGI_10022840; scaffold896 TRF Tandem_Repeat 320785 320824 80 + . . scaffold896 GLEAN mRNA 321483 321701 0.997833 - . ID=CGI_10022840; scaffold896 TRF Tandem_Repeat 321483 321701 112 + . . scaffold896 GLEAN mRNA 321483 321697 0.997833 - . ID=CGI_10022840; scaffold896 TRF Tandem_Repeat 321483 321697 165 + . . scaffold896 GLEAN mRNA 321573 321701 0.997833 - . ID=CGI_10022840; scaffold896 TRF Tandem_Repeat 321573 321701 77 + . . scaffold896 GLEAN mRNA 313060 314343 0.997833 - . ID=CGI_10022840; scaffold896 WUBlastX LINE_L1-Tx1 313060 314343 121 - . . scaffold896 GLEAN mRNA 314319 316364 0.997833 - . ID=CGI_10022840; scaffold896 WUBlastX LINE_L1-Tx1 314319 316364 909 - . . scaffold896 GLEAN mRNA 381058 381389 0.585902 - . ID=CGI_10022847; scaffold896 TRF Tandem_Repeat 381058 381389 236 + . . scaffold896 GLEAN mRNA 381136 381349 0.585902 - . ID=CGI_10022847; scaffold896 TRF Tandem_Repeat 381136 381349 110 + . . scaffold896 GLEAN mRNA 381289 381361 0.585902 - . ID=CGI_10022847; scaffold896 TRF Tandem_Repeat 381289 381361 65 + . . scaffold896 GLEAN mRNA 388224 388434 0.585902 - . ID=CGI_10022847; scaffold896 TRF Tandem_Repeat 388224 388434 104 + . . scaffold896 GLEAN mRNA 388159 388434 0.585902 - . ID=CGI_10022847; scaffold896 TRF Tandem_Repeat 388159 388434 239 + . . scaffold896 GLEAN mRNA 388337 388434 0.585902 - . ID=CGI_10022847; scaffold896 TRF Tandem_Repeat 388337 388434 91 + . . scaffold896 GLEAN mRNA 393279 393439 0.585902 - . ID=CGI_10022847; scaffold896 TRF Tandem_Repeat 393279 393439 169 + . . scaffold896 GLEAN mRNA 393468 393527 0.585902 - . ID=CGI_10022847; scaffold896 TRF Tandem_Repeat 393468 393527 72 + . . scaffold896 GLEAN mRNA 422937 422990 0.990759 + . ID=CGI_10022848; scaffold896 TRF Tandem_Repeat 422937 422990 74 + . . scaffold896 GLEAN mRNA 423163 424239 0.990759 + . ID=CGI_10022848; scaffold896 TRF Tandem_Repeat 423163 424239 1777 + . . scaffold896 GLEAN mRNA 432433 432477 0.584747 + . ID=CGI_10022849; scaffold896 TRF Tandem_Repeat 432433 432477 90 + . . scaffold896 GLEAN mRNA 434072 434119 0.584747 + . ID=CGI_10022849; scaffold896 TRF Tandem_Repeat 434072 434119 96 + . . scaffold896 GLEAN mRNA 438049 438420 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 438049 438420 134 - . . scaffold896 GLEAN mRNA 437261 437575 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 437261 437575 80 - . . scaffold896 GLEAN mRNA 437751 438032 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 437751 438032 51 - . . scaffold896 GLEAN mRNA 438052 438321 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 438052 438321 137 - . . scaffold896 GLEAN mRNA 437616 438044 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 437616 438044 37 - . . scaffold896 GLEAN mRNA 438187 438477 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-BovB 438187 438477 31 - . . scaffold896 GLEAN mRNA 437141 437596 0.584747 + . ID=CGI_10022849; scaffold896 WUBlastX LINE_RTE-X 437141 437596 46 - . . scaffold896 GLEAN mRNA 438049 438420 0.551142 - . ID=CGI_10022850; scaffold896 WUBlastX LINE_RTE-X 438049 438420 134 - . . scaffold896 GLEAN mRNA 437261 437575 0.551142 - . ID=CGI_10022850; scaffold896 WUBlastX LINE_RTE-X 437261 437575 80 - . . scaffold896 GLEAN mRNA 437751 438032 0.551142 - . ID=CGI_10022850; scaffold896 WUBlastX LINE_RTE-X 437751 438032 51 - . . scaffold896 GLEAN mRNA 438052 438321 0.551142 - . ID=CGI_10022850; scaffold896 WUBlastX LINE_RTE-X 438052 438321 137 - . . scaffold896 GLEAN mRNA 437616 438044 0.551142 - . ID=CGI_10022850; scaffold896 WUBlastX LINE_RTE-X 437616 438044 37 - . . scaffold896 GLEAN mRNA 438187 438477 0.551142 - . ID=CGI_10022850; scaffold896 WUBlastX LINE_RTE-BovB 438187 438477 31 - . . scaffold896 GLEAN mRNA 437141 437596 0.551142 - . ID=CGI_10022850; scaffold896 WUBlastX LINE_RTE-X 437141 437596 46 - . . scaffold896 GLEAN mRNA 447535 448401 0.551142 - . ID=CGI_10022850; scaffold896 WUBlastX LINE_L1-Tx1 447535 448401 100 - . . scaffold896 GLEAN mRNA 469514 469561 0.883594 + . ID=CGI_10022851; scaffold896 TRF Tandem_Repeat 469514 469561 96 + . . scaffold896 GLEAN mRNA 471254 471296 0.883594 + . ID=CGI_10022851; scaffold896 TRF Tandem_Repeat 471254 471296 86 + . . scaffold896 GLEAN mRNA 472078 472151 0.883594 + . ID=CGI_10022851; scaffold896 TRF Tandem_Repeat 472078 472151 62 + . . scaffold896 GLEAN mRNA 469514 469561 0.999648 - . ID=CGI_10022852; scaffold896 TRF Tandem_Repeat 469514 469561 96 + . . scaffold896 GLEAN mRNA 471254 471296 0.999648 - . ID=CGI_10022852; scaffold896 TRF Tandem_Repeat 471254 471296 86 + . . scaffold896 GLEAN mRNA 507470 508602 0.862017 - . ID=CGI_10022855; scaffold896 TRF Tandem_Repeat 507470 508602 745 + . . scaffold896 GLEAN mRNA 546325 546378 0.989674 + . ID=CGI_10022859; scaffold896 TRF Tandem_Repeat 546325 546378 108 + . . scaffold896 GLEAN mRNA 595240 595286 0.352689 + . ID=CGI_10022861; scaffold896 TRF Tandem_Repeat 595240 595286 94 + . . scaffold896 GLEAN mRNA 651214 651263 0.999027 + . ID=CGI_10022869; scaffold896 TRF Tandem_Repeat 651214 651263 100 + . . scaffold896 GLEAN mRNA 661564 661612 1 - . ID=CGI_10022870; scaffold896 TRF Tandem_Repeat 661564 661612 98 + . . scaffold896 GLEAN mRNA 766663 766716 0.614606 + . ID=CGI_10022873; scaffold896 TRF Tandem_Repeat 766663 766716 90 + . . scaffold896 GLEAN mRNA 768492 768541 0.614606 + . ID=CGI_10022873; scaffold896 TRF Tandem_Repeat 768492 768541 84 + . . scaffold896 GLEAN mRNA 771000 771042 0.614606 + . ID=CGI_10022873; scaffold896 TRF Tandem_Repeat 771000 771042 86 + . . scaffold144 GLEAN mRNA 34436 34524 0.668908 + . ID=CGI_10022877; scaffold144 TRF Tandem_Repeat 34436 34524 151 + . . scaffold144 GLEAN mRNA 44396 44432 0.668908 + . ID=CGI_10022877; scaffold144 TRF Tandem_Repeat 44396 44432 74 + . . scaffold144 GLEAN mRNA 45257 45302 0.668908 + . ID=CGI_10022877; scaffold144 TRF Tandem_Repeat 45257 45302 92 + . . scaffold144 GLEAN mRNA 62892 62953 0.343048 + . ID=CGI_10022878; scaffold144 TRF Tandem_Repeat 62892 62953 124 + . . scaffold144 GLEAN mRNA 63288 63340 0.343048 + . ID=CGI_10022878; scaffold144 TRF Tandem_Repeat 63288 63340 106 + . . scaffold144 GLEAN mRNA 70374 71083 0.343048 + . ID=CGI_10022878; scaffold144 TRF Tandem_Repeat 70374 71083 899 + . . scaffold144 GLEAN mRNA 71090 71128 0.343048 + . ID=CGI_10022878; scaffold144 TRF Tandem_Repeat 71090 71128 60 + . . scaffold144 GLEAN mRNA 73641 73984 0.343048 + . ID=CGI_10022878; scaffold144 TRF Tandem_Repeat 73641 73984 206 + . . scaffold144 GLEAN mRNA 70374 71083 0.987924 - . ID=CGI_10022879; scaffold144 TRF Tandem_Repeat 70374 71083 899 + . . scaffold144 GLEAN mRNA 71090 71128 0.987924 - . ID=CGI_10022879; scaffold144 TRF Tandem_Repeat 71090 71128 60 + . . scaffold144 GLEAN mRNA 87324 87521 0.987917 - . ID=CGI_10022880; scaffold144 TRF Tandem_Repeat 87324 87521 333 + . . scaffold144 GLEAN mRNA 87324 87549 0.987917 - . ID=CGI_10022880; scaffold144 TRF Tandem_Repeat 87324 87549 209 + . . scaffold144 GLEAN mRNA 114965 114999 0.801897 - . ID=CGI_10022882; scaffold144 TRF Tandem_Repeat 114965 114999 70 + . . scaffold144 GLEAN mRNA 124940 125083 0.801897 - . ID=CGI_10022882; scaffold144 TRF Tandem_Repeat 124940 125083 105 + . . scaffold144 GLEAN mRNA 164928 165385 0.999949 + . ID=CGI_10022884; scaffold144 TRF Tandem_Repeat 164928 165385 290 + . . scaffold144 GLEAN mRNA 164968 165385 0.999949 + . ID=CGI_10022884; scaffold144 TRF Tandem_Repeat 164968 165385 354 + . . scaffold144 GLEAN mRNA 164923 165385 0.999949 + . ID=CGI_10022884; scaffold144 TRF Tandem_Repeat 164923 165385 505 + . . scaffold144 GLEAN mRNA 166020 166207 0.999949 + . ID=CGI_10022884; scaffold144 TRF Tandem_Repeat 166020 166207 107 + . . scaffold144 GLEAN mRNA 169359 169415 0.999949 + . ID=CGI_10022884; scaffold144 TRF Tandem_Repeat 169359 169415 51 + . . scaffold144 GLEAN mRNA 171898 172281 0.999949 + . ID=CGI_10022884; scaffold144 TRF Tandem_Repeat 171898 172281 563 + . . scaffold144 GLEAN mRNA 171898 172281 0.999949 + . ID=CGI_10022884; scaffold144 TRF Tandem_Repeat 171898 172281 612 + . . scaffold144 GLEAN mRNA 190139 190207 0.654733 - . ID=CGI_10022886; scaffold144 TRF Tandem_Repeat 190139 190207 104 + . . scaffold144 GLEAN mRNA 270266 270621 0.393792 - . ID=CGI_10022892; scaffold144 TRF Tandem_Repeat 270266 270621 487 + . . scaffold144 GLEAN mRNA 293546 293594 0.676766 - . ID=CGI_10022893; scaffold144 TRF Tandem_Repeat 293546 293594 98 + . . scaffold144 GLEAN mRNA 293839 293927 0.676766 - . ID=CGI_10022893; scaffold144 TRF Tandem_Repeat 293839 293927 97 + . . scaffold144 GLEAN mRNA 344145 344214 1 - . ID=CGI_10022896; scaffold144 TRF Tandem_Repeat 344145 344214 122 + . . scaffold144 GLEAN mRNA 387873 388196 0.64132 - . ID=CGI_10022897; scaffold144 TRF Tandem_Repeat 387873 388196 538 + . . scaffold144 GLEAN mRNA 389156 389206 0.64132 - . ID=CGI_10022897; scaffold144 TRF Tandem_Repeat 389156 389206 102 + . . scaffold144 GLEAN mRNA 405588 405653 0.694226 - . ID=CGI_10022899; scaffold144 TRF Tandem_Repeat 405588 405653 132 + . . scaffold144 GLEAN mRNA 418115 418182 0.694226 - . ID=CGI_10022899; scaffold144 TRF Tandem_Repeat 418115 418182 136 + . . scaffold144 GLEAN mRNA 424663 425108 0.694226 - . ID=CGI_10022899; scaffold144 TRF Tandem_Repeat 424663 425108 240 + . . scaffold144 GLEAN mRNA 484873 484994 0.893641 + . ID=CGI_10022903; scaffold144 TRF Tandem_Repeat 484873 484994 154 + . . scaffold144 GLEAN mRNA 679021 679058 0.458435 + . ID=CGI_10022908; scaffold144 TRF Tandem_Repeat 679021 679058 76 + . . scaffold144 GLEAN mRNA 710101 710161 0.620366 + . ID=CGI_10022910; scaffold144 TRF Tandem_Repeat 710101 710161 115 + . . scaffold144 GLEAN mRNA 711815 711848 0.620366 + . ID=CGI_10022910; scaffold144 TRF Tandem_Repeat 711815 711848 68 + . . scaffold144 GLEAN mRNA 736030 736129 0.999674 + . ID=CGI_10022912; scaffold144 TRF Tandem_Repeat 736030 736129 200 + . . scaffold144 GLEAN mRNA 741516 741545 0.999674 + . ID=CGI_10022912; scaffold144 TRF Tandem_Repeat 741516 741545 60 + . . scaffold144 GLEAN mRNA 741851 741888 0.999674 + . ID=CGI_10022912; scaffold144 TRF Tandem_Repeat 741851 741888 76 + . . scaffold144 GLEAN mRNA 741997 742021 0.999674 + . ID=CGI_10022912; scaffold144 TRF Tandem_Repeat 741997 742021 50 + . . scaffold144 GLEAN mRNA 742916 742945 0.999674 + . ID=CGI_10022912; scaffold144 TRF Tandem_Repeat 742916 742945 60 + . . scaffold144 GLEAN mRNA 743021 743065 0.999674 + . ID=CGI_10022912; scaffold144 TRF Tandem_Repeat 743021 743065 65 + . . scaffold144 GLEAN mRNA 745887 745925 0.999674 + . ID=CGI_10022912; scaffold144 TRF Tandem_Repeat 745887 745925 69 + . . scaffold144 GLEAN mRNA 736030 736129 0.999982 - . ID=CGI_10022913; scaffold144 TRF Tandem_Repeat 736030 736129 200 + . . scaffold144 GLEAN mRNA 741516 741545 0.999597 - . ID=CGI_10022914; scaffold144 TRF Tandem_Repeat 741516 741545 60 + . . scaffold144 GLEAN mRNA 741851 741888 0.999597 - . ID=CGI_10022914; scaffold144 TRF Tandem_Repeat 741851 741888 76 + . . scaffold144 GLEAN mRNA 741997 742021 0.999597 - . ID=CGI_10022914; scaffold144 TRF Tandem_Repeat 741997 742021 50 + . . scaffold144 GLEAN mRNA 742916 742945 0.999597 - . ID=CGI_10022914; scaffold144 TRF Tandem_Repeat 742916 742945 60 + . . scaffold144 GLEAN mRNA 743021 743065 0.999597 - . ID=CGI_10022914; scaffold144 TRF Tandem_Repeat 743021 743065 65 + . . scaffold144 GLEAN mRNA 745887 745925 0.999597 - . ID=CGI_10022914; scaffold144 TRF Tandem_Repeat 745887 745925 69 + . . scaffold144 GLEAN mRNA 779828 779889 0.628464 - . ID=CGI_10022916; scaffold144 TRF Tandem_Repeat 779828 779889 65 + . . scaffold144 GLEAN mRNA 779828 779889 0.628464 - . ID=CGI_10022916; scaffold144 TRF Tandem_Repeat 779828 779889 83 + . . scaffold144 GLEAN mRNA 786799 786902 0.628464 - . ID=CGI_10022916; scaffold144 TRF Tandem_Repeat 786799 786902 190 + . . scaffold144 GLEAN mRNA 794169 794256 0.628464 - . ID=CGI_10022916; scaffold144 TRF Tandem_Repeat 794169 794256 167 + . . scaffold950 GLEAN mRNA 46376 47466 0.326384 + . ID=CGI_10022918; scaffold950 TRF Tandem_Repeat 46376 47466 883 + . . scaffold950 GLEAN mRNA 48809 48913 0.326384 + . ID=CGI_10022918; scaffold950 WUBlastX LINE_Rex-Babar 48809 48913 29 + . . scaffold950 GLEAN mRNA 49178 49303 0.326384 + . ID=CGI_10022918; scaffold950 WUBlastX LINE_CR1 49178 49303 20 + . . scaffold950 GLEAN mRNA 49847 50980 0.326384 + . ID=CGI_10022918; scaffold950 WUBlastX LINE_CR1-L2 49847 50980 501 + . . scaffold950 GLEAN mRNA 97361 97446 1 - . ID=CGI_10022920; scaffold950 TRF Tandem_Repeat 97361 97446 86 + . . scaffold950 GLEAN mRNA 109560 110501 1 - . ID=CGI_10022920; scaffold950 TRF Tandem_Repeat 109560 110501 1275 + . . scaffold950 GLEAN mRNA 107705 108073 1 - . ID=CGI_10022920; scaffold950 WUBlastX DNA_TcMar-Pogo 107705 108073 81 - . . scaffold950 GLEAN mRNA 107609 107998 1 - . ID=CGI_10022920; scaffold950 WUBlastX DNA_TcMar-Tc2 107609 107998 129 - . . scaffold950 GLEAN mRNA 108160 108546 1 - . ID=CGI_10022920; scaffold950 WUBlastX DNA_TcMar-Tc2 108160 108546 146 - . . scaffold950 GLEAN mRNA 101197 101556 1 - . ID=CGI_10022920; scaffold950 WUBlastX LINE_L1-Tx1 101197 101556 151 + . . scaffold950 GLEAN mRNA 108094 108936 1 - . ID=CGI_10022920; scaffold950 WUBlastX DNA_TcMar-Tc2 108094 108936 139 - . . scaffold950 GLEAN mRNA 128561 128649 0.996917 + . ID=CGI_10022921; scaffold950 TRF Tandem_Repeat 128561 128649 63 + . . scaffold950 GLEAN mRNA 130352 130448 0.996917 + . ID=CGI_10022921; scaffold950 TRF Tandem_Repeat 130352 130448 83 + . . scaffold950 GLEAN mRNA 130887 130926 0.996917 + . ID=CGI_10022921; scaffold950 TRF Tandem_Repeat 130887 130926 53 + . . scaffold950 GLEAN mRNA 120966 121109 0.996917 + . ID=CGI_10022921; scaffold950 WUBlastX LTR_DIRS 120966 121109 77 - . . scaffold950 GLEAN mRNA 137402 137434 0.996917 + . ID=CGI_10022921; scaffold950 TRF Tandem_Repeat 137402 137434 66 + . . scaffold950 GLEAN mRNA 142503 142599 0.996917 + . ID=CGI_10022921; scaffold950 TRF Tandem_Repeat 142503 142599 70 + . . scaffold950 GLEAN mRNA 130957 132245 0.996917 + . ID=CGI_10022921; scaffold950 TRF Tandem_Repeat 130957 132245 1887 + . . scaffold950 GLEAN mRNA 159231 159517 0.94663 + . ID=CGI_10022923; scaffold950 WUBlastX DNA_TcMar-Pogo 159203 159517 30 + . . scaffold950 GLEAN mRNA 236379 236447 0.638871 - . ID=CGI_10022925; scaffold950 TRF Tandem_Repeat 236379 236447 79 + . . scaffold950 GLEAN mRNA 243558 243620 0.638871 - . ID=CGI_10022925; scaffold950 TRF Tandem_Repeat 243558 243620 126 + . . scaffold950 GLEAN mRNA 243751 243822 0.638871 - . ID=CGI_10022925; scaffold950 TRF Tandem_Repeat 243751 243822 144 + . . scaffold950 GLEAN mRNA 235298 235408 0.638871 - . ID=CGI_10022925; scaffold950 WUBlastX LINE_L2 235298 235408 43 - . . scaffold950 GLEAN mRNA 235428 235466 0.638871 - . ID=CGI_10022925; scaffold950 WUBlastX LINE_L2 235428 235466 29 - . . scaffold950 GLEAN mRNA 235428 235499 0.638871 - . ID=CGI_10022925; scaffold950 WUBlastX LINE_L2 235428 235499 22 - . . scaffold950 GLEAN mRNA 235216 235308 0.638871 - . ID=CGI_10022925; scaffold950 WUBlastX LINE_L2 235216 235308 39 - . . scaffold950 GLEAN mRNA 355981 356041 0.981503 - . ID=CGI_10022928; scaffold950 TRF Tandem_Repeat 355981 356041 122 + . . scaffold950 GLEAN mRNA 350868 351098 0.981503 - . ID=CGI_10022928; scaffold950 WUBlastX DNA_TcMar-Tc1 350868 351098 92 - . . scaffold950 GLEAN mRNA 350700 351071 0.981503 - . ID=CGI_10022928; scaffold950 WUBlastX DNA_TcMar-Tc1 350700 351071 23 - . . scaffold950 GLEAN mRNA 350395 350673 0.981503 - . ID=CGI_10022928; scaffold950 WUBlastX DNA_TcMar-Tc1 350395 350673 73 - . . scaffold950 GLEAN mRNA 361021 361063 0.981503 - . ID=CGI_10022928; scaffold950 TRF Tandem_Repeat 361021 361063 52 + . . scaffold950 GLEAN mRNA 390733 391149 0.588964 + . ID=CGI_10022929; scaffold950 WUBlastX LINE_L2 390733 391149 196 - . . scaffold950 GLEAN mRNA 390700 391374 0.588964 + . ID=CGI_10022929; scaffold950 WUBlastX LINE_L2 390700 391374 126 - . . scaffold950 GLEAN mRNA 390658 391149 0.588964 + . ID=CGI_10022929; scaffold950 WUBlastX LINE_L2 390658 391149 189 - . . scaffold950 GLEAN mRNA 390058 391149 0.588964 + . ID=CGI_10022929; scaffold950 WUBlastX LINE_L2 390058 391149 141 - . . scaffold950 GLEAN mRNA 390733 391242 0.588964 + . ID=CGI_10022929; scaffold950 WUBlastX LINE_L2 390733 391242 150 - . . scaffold950 GLEAN mRNA 391315 391680 0.588964 + . ID=CGI_10022929; scaffold950 WUBlastX LINE_L2 391315 391680 84 - . . scaffold950 GLEAN mRNA 397123 397221 0.588964 + . ID=CGI_10022929; scaffold950 WUBlastX LTR_DIRS 397123 397221 63 - . . scaffold950 GLEAN mRNA 720320 720371 0.497867 - . ID=CGI_10022935; scaffold950 TRF Tandem_Repeat 720320 720371 104 + . . scaffold169 GLEAN mRNA 31894 32211 0.712323 + . ID=CGI_10022939; scaffold169 WUBlastX LINE_RTE-X 31894 32211 44 + . . scaffold169 GLEAN mRNA 96427 96480 0.999882 - . ID=CGI_10022943; scaffold169 TRF Tandem_Repeat 96427 96480 65 + . . scaffold169 GLEAN mRNA 97625 97737 0.999882 - . ID=CGI_10022943; scaffold169 TRF Tandem_Repeat 97625 97737 129 + . . scaffold169 GLEAN mRNA 103277 103315 0.999428 + . ID=CGI_10022944; scaffold169 TRF Tandem_Repeat 103277 103315 78 + . . scaffold169 GLEAN mRNA 135373 135486 0.999662 - . ID=CGI_10022945; scaffold169 TRF Tandem_Repeat 135373 135486 185 + . . scaffold169 GLEAN mRNA 135488 135542 0.999662 - . ID=CGI_10022945; scaffold169 TRF Tandem_Repeat 135488 135542 110 + . . scaffold169 GLEAN mRNA 137117 137165 0.999662 - . ID=CGI_10022945; scaffold169 TRF Tandem_Repeat 137117 137165 84 + . . scaffold169 GLEAN mRNA 140068 140111 0.999662 - . ID=CGI_10022945; scaffold169 TRF Tandem_Repeat 140068 140111 88 + . . scaffold169 GLEAN mRNA 140769 140848 0.999662 - . ID=CGI_10022945; scaffold169 TRF Tandem_Repeat 140769 140848 160 + . . scaffold169 GLEAN mRNA 145694 145781 0.999662 - . ID=CGI_10022945; scaffold169 TRF Tandem_Repeat 145694 145781 128 + . . scaffold169 GLEAN mRNA 145821 145891 0.999662 - . ID=CGI_10022945; scaffold169 TRF Tandem_Repeat 145821 145891 87 + . . scaffold169 GLEAN mRNA 160246 161323 0.840357 - . ID=CGI_10022946; scaffold169 TRF Tandem_Repeat 160246 161323 1970 + . . scaffold169 GLEAN mRNA 290460 290498 0.839155 + . ID=CGI_10022951; scaffold169 TRF Tandem_Repeat 290460 290498 78 + . . scaffold169 GLEAN mRNA 290629 290726 0.839155 + . ID=CGI_10022951; scaffold169 TRF Tandem_Repeat 290629 290726 106 + . . scaffold169 GLEAN mRNA 292882 292987 0.839155 + . ID=CGI_10022951; scaffold169 TRF Tandem_Repeat 292882 292987 139 + . . scaffold169 GLEAN mRNA 317158 317260 1 - . ID=CGI_10022952; scaffold169 TRF Tandem_Repeat 317158 317260 140 + . . scaffold169 GLEAN mRNA 322300 322357 1 - . ID=CGI_10022952; scaffold169 TRF Tandem_Repeat 322300 322357 116 + . . scaffold169 GLEAN mRNA 424545 424599 0.990496 + . ID=CGI_10022956; scaffold169 TRF Tandem_Repeat 424545 424599 110 + . . scaffold169 GLEAN mRNA 431272 431359 0.990496 + . ID=CGI_10022956; scaffold169 TRF Tandem_Repeat 431272 431359 87 + . . scaffold169 GLEAN mRNA 562612 564417 1 + . ID=CGI_10022958; scaffold169 WUBlastX DNA_Sola 562555 564417 864 + . . scaffold169 GLEAN mRNA 564668 565291 1 + . ID=CGI_10022958; scaffold169 WUBlastX DNA_Sola 564668 565312 170 + . . scaffold169 GLEAN mRNA 613077 613105 0.88882 + . ID=CGI_10022959; scaffold169 TRF Tandem_Repeat 613077 613105 58 + . . scaffold169 GLEAN mRNA 621637 622345 0.88882 + . ID=CGI_10022959; scaffold169 TRF Tandem_Repeat 621637 622345 867 + . . scaffold169 GLEAN mRNA 635126 636838 0.973288 - . ID=CGI_10022960; scaffold169 WUBlastX DNA_Sola 635126 636838 759 - . . scaffold169 GLEAN mRNA 629126 629560 0.973288 - . ID=CGI_10022960; scaffold169 WUBlastX LTR_Gypsy 629126 629560 146 + . . scaffold169 GLEAN mRNA 630806 632353 0.973288 - . ID=CGI_10022960; scaffold169 WUBlastX LTR_Gypsy 630806 632353 889 + . . scaffold169 GLEAN mRNA 632429 632563 0.973288 - . ID=CGI_10022960; scaffold169 WUBlastX LTR_Gypsy 632429 632563 26 + . . scaffold169 GLEAN mRNA 632207 632455 0.973288 - . ID=CGI_10022960; scaffold169 WUBlastX LTR_Copia 632207 632455 21 + . . scaffold169 GLEAN mRNA 630210 630839 0.973288 - . ID=CGI_10022960; scaffold169 WUBlastX LTR_Gypsy 630210 630839 342 + . . scaffold169 GLEAN mRNA 629556 630692 0.973288 - . ID=CGI_10022960; scaffold169 WUBlastX LTR_Gypsy 629556 630692 871 + . . scaffold169 GLEAN mRNA 635513 637102 0.973288 - . ID=CGI_10022960; scaffold169 WUBlastX DNA_Sola 635513 637102 51 - . . scaffold169 GLEAN mRNA 803577 804788 0.636202 + . ID=CGI_10022966; scaffold169 WUBlastX DNA_Sola 803577 804788 67 + . . scaffold169 GLEAN mRNA 804372 804992 0.636202 + . ID=CGI_10022966; scaffold169 WUBlastX DNA_Sola 804372 804992 180 + . . scaffold169 GLEAN mRNA 803790 804809 0.636202 + . ID=CGI_10022966; scaffold169 WUBlastX DNA_Sola 803790 804809 70 + . . scaffold348 GLEAN mRNA 130459 130857 0.749493 + . ID=CGI_10022971; scaffold348 WUBlastX LINE_L2 130459 130857 117 + . . scaffold348 GLEAN mRNA 130235 130462 0.749493 + . ID=CGI_10022971; scaffold348 WUBlastX LINE_L1 130235 130462 24 + . . scaffold348 GLEAN mRNA 162084 162199 0.583298 + . ID=CGI_10022972; scaffold348 TRF Tandem_Repeat 162084 162199 119 + . . scaffold348 GLEAN mRNA 170630 170682 0.583298 + . ID=CGI_10022972; scaffold348 TRF Tandem_Repeat 170630 170682 97 + . . scaffold348 GLEAN mRNA 173954 174005 0.583298 + . ID=CGI_10022972; scaffold348 TRF Tandem_Repeat 173954 174005 104 + . . scaffold348 GLEAN mRNA 176054 176308 0.583298 + . ID=CGI_10022972; scaffold348 WUBlastX LINE_Penelope 176054 176308 65 - . . scaffold348 GLEAN mRNA 165029 165391 0.583298 + . ID=CGI_10022972; scaffold348 WUBlastX LINE_L1-Tx1 165029 165391 66 - . . scaffold348 GLEAN mRNA 181688 181900 0.583298 + . ID=CGI_10022972; scaffold348 WUBlastX LINE_L1-Tx1 181688 181900 26 - . . scaffold348 GLEAN mRNA 180195 180243 0.583298 + . ID=CGI_10022972; scaffold348 TRF Tandem_Repeat 180195 180243 80 + . . scaffold348 GLEAN mRNA 200275 200323 0.999949 + . ID=CGI_10022973; scaffold348 TRF Tandem_Repeat 200275 200323 98 + . . scaffold348 GLEAN mRNA 202364 202485 0.999949 + . ID=CGI_10022973; scaffold348 TRF Tandem_Repeat 202364 202485 208 + . . scaffold348 GLEAN mRNA 211014 211042 0.499798 + . ID=CGI_10022974; scaffold348 TRF Tandem_Repeat 211014 211042 58 + . . scaffold348 GLEAN mRNA 216540 218386 0.499798 + . ID=CGI_10022974; scaffold348 TRF Tandem_Repeat 216540 218857 2610 + . . scaffold348 GLEAN mRNA 216540 218857 1 - . ID=CGI_10022975; scaffold348 TRF Tandem_Repeat 216540 218857 2610 + . . scaffold348 GLEAN mRNA 233382 233772 0.485841 + . ID=CGI_10022976; scaffold348 TRF Tandem_Repeat 233382 233772 269 + . . scaffold348 GLEAN mRNA 237093 237123 0.485841 + . ID=CGI_10022976; scaffold348 TRF Tandem_Repeat 237093 237123 53 + . . scaffold348 GLEAN mRNA 339814 339842 0.5 + . ID=CGI_10022980; scaffold348 TRF Tandem_Repeat 339814 339842 58 + . . scaffold348 GLEAN mRNA 343774 343813 0.5 + . ID=CGI_10022980; scaffold348 TRF Tandem_Repeat 343774 343813 80 + . . scaffold348 GLEAN mRNA 376855 376894 0.760293 - . ID=CGI_10022982; scaffold348 TRF Tandem_Repeat 376855 376894 80 + . . scaffold348 GLEAN mRNA 436771 436830 0.999994 - . ID=CGI_10022984; scaffold348 TRF Tandem_Repeat 436771 436830 120 + . . scaffold348 GLEAN mRNA 446762 446827 0.794457 + . ID=CGI_10022985; scaffold348 TRF Tandem_Repeat 446762 446827 132 + . . scaffold348 GLEAN mRNA 484287 484311 0.999351 + . ID=CGI_10022987; scaffold348 TRF Tandem_Repeat 484287 484311 50 + . . scaffold348 GLEAN mRNA 555050 555577 0.727625 - . ID=CGI_10022990; scaffold348 TRF Tandem_Repeat 555050 555577 428 + . . scaffold348 GLEAN mRNA 555160 555775 0.727625 - . ID=CGI_10022990; scaffold348 TRF Tandem_Repeat 555160 555775 740 + . . scaffold348 GLEAN mRNA 555623 555775 0.727625 - . ID=CGI_10022990; scaffold348 TRF Tandem_Repeat 555623 555775 166 + . . scaffold348 GLEAN mRNA 560091 560378 0.727625 - . ID=CGI_10022990; scaffold348 TRF Tandem_Repeat 560091 560378 375 + . . scaffold348 GLEAN mRNA 568941 569675 0.727625 - . ID=CGI_10022990; scaffold348 TRF Tandem_Repeat 568941 569675 1044 + . . scaffold348 GLEAN mRNA 619125 619190 1 + . ID=CGI_10022991; scaffold348 TRF Tandem_Repeat 619125 619190 123 + . . scaffold348 GLEAN mRNA 639179 640637 0.999375 - . ID=CGI_10022993; scaffold348 TRF Tandem_Repeat 639179 640637 2148 + . . scaffold348 GLEAN mRNA 641012 641047 0.999375 - . ID=CGI_10022993; scaffold348 TRF Tandem_Repeat 641012 641047 72 + . . scaffold348 GLEAN mRNA 642723 642779 0.999375 - . ID=CGI_10022993; scaffold348 TRF Tandem_Repeat 642723 642779 50 + . . scaffold348 GLEAN mRNA 650164 650346 1 + . ID=CGI_10022994; scaffold348 TRF Tandem_Repeat 650164 650346 157 + . . scaffold348 GLEAN mRNA 693973 694116 0.728759 - . ID=CGI_10022997; scaffold348 TRF Tandem_Repeat 693973 694116 87 + . . scaffold348 GLEAN mRNA 693993 694236 0.728759 - . ID=CGI_10022997; scaffold348 TRF Tandem_Repeat 693993 694236 215 + . . scaffold348 GLEAN mRNA 693995 694236 0.728759 - . ID=CGI_10022997; scaffold348 TRF Tandem_Repeat 693995 694236 175 + . . scaffold348 GLEAN mRNA 693978 694236 0.728759 - . ID=CGI_10022997; scaffold348 TRF Tandem_Repeat 693978 694236 202 + . . scaffold348 GLEAN mRNA 716580 716658 0.987905 - . ID=CGI_10023001; scaffold348 TRF Tandem_Repeat 716580 716658 151 + . . scaffold348 GLEAN mRNA 720201 720326 0.987905 - . ID=CGI_10023001; scaffold348 WUBlastX DNA_Kolobok 720201 720326 59 + . . scaffold348 GLEAN mRNA 723420 723457 0.987905 - . ID=CGI_10023001; scaffold348 TRF Tandem_Repeat 723420 723457 76 + . . scaffold348 GLEAN mRNA 724983 725046 0.987905 - . ID=CGI_10023001; scaffold348 TRF Tandem_Repeat 724983 725046 128 + . . scaffold348 GLEAN mRNA 731777 731809 0.987905 - . ID=CGI_10023001; scaffold348 TRF Tandem_Repeat 731777 731809 52 + . . scaffold1101 GLEAN mRNA 41807 41904 0.981404 + . ID=CGI_10023010; scaffold1101 TRF Tandem_Repeat 41807 41904 72 + . . scaffold1101 GLEAN mRNA 146323 146362 0.479315 + . ID=CGI_10023014; scaffold1101 TRF Tandem_Repeat 146323 146362 80 + . . scaffold1101 GLEAN mRNA 146894 146928 0.479315 + . ID=CGI_10023014; scaffold1101 TRF Tandem_Repeat 146894 146928 70 + . . scaffold1101 GLEAN mRNA 152987 153048 0.479315 + . ID=CGI_10023014; scaffold1101 TRF Tandem_Repeat 152987 153048 117 + . . scaffold1101 GLEAN mRNA 153048 153084 0.479315 + . ID=CGI_10023014; scaffold1101 TRF Tandem_Repeat 153048 153084 56 + . . scaffold1101 GLEAN mRNA 149152 149430 0.479315 + . ID=CGI_10023014; scaffold1101 WUBlastX LINE_RTE-X 149152 149430 165 - . . scaffold1101 GLEAN mRNA 148275 148484 0.479315 + . ID=CGI_10023014; scaffold1101 WUBlastX LINE_RTE-X 148275 148484 50 - . . scaffold1101 GLEAN mRNA 149559 151016 0.479315 + . ID=CGI_10023014; scaffold1101 WUBlastX LINE_RTE-X 149559 151016 204 - . . scaffold1101 GLEAN mRNA 151151 151696 0.479315 + . ID=CGI_10023014; scaffold1101 WUBlastX LINE_CR1 151151 151696 43 - . . scaffold1101 GLEAN mRNA 151166 151576 0.479315 + . ID=CGI_10023014; scaffold1101 WUBlastX LINE_RTE-X 151166 151576 122 - . . scaffold1101 GLEAN mRNA 148502 149179 0.479315 + . ID=CGI_10023014; scaffold1101 WUBlastX LINE_RTE-X 148502 149179 223 - . . scaffold1101 GLEAN mRNA 149529 150512 0.479315 + . ID=CGI_10023014; scaffold1101 WUBlastX LINE_RTE-X 149529 150512 257 - . . scaffold1101 GLEAN mRNA 151037 151522 0.479315 + . ID=CGI_10023014; scaffold1101 WUBlastX LINE_L2 151037 151522 27 - . . scaffold1101 GLEAN mRNA 151725 151877 0.479315 + . ID=CGI_10023014; scaffold1101 WUBlastX LINE_L1 151725 151877 64 - . . scaffold1101 GLEAN mRNA 149005 149589 0.479315 + . ID=CGI_10023014; scaffold1101 WUBlastX LINE_RTE-X 149005 149589 139 - . . scaffold1101 GLEAN mRNA 165150 165179 0.74183 + . ID=CGI_10023015; scaffold1101 TRF Tandem_Repeat 165150 165179 60 + . . scaffold1101 GLEAN mRNA 165150 165179 0.711116 - . ID=CGI_10023016; scaffold1101 TRF Tandem_Repeat 165150 165179 60 + . . scaffold1101 GLEAN mRNA 170297 170347 0.711116 - . ID=CGI_10023016; scaffold1101 TRF Tandem_Repeat 170297 170347 102 + . . scaffold1101 GLEAN mRNA 178044 178138 0.711116 - . ID=CGI_10023016; scaffold1101 TRF Tandem_Repeat 178044 178138 181 + . . scaffold1101 GLEAN mRNA 178044 178138 0.999226 + . ID=CGI_10023017; scaffold1101 TRF Tandem_Repeat 178044 178138 181 + . . scaffold1101 GLEAN mRNA 184677 184738 1 + . ID=CGI_10023018; scaffold1101 TRF Tandem_Repeat 184677 184738 124 + . . scaffold1101 GLEAN mRNA 289139 289197 0.355682 + . ID=CGI_10023022; scaffold1101 TRF Tandem_Repeat 289139 289197 84 + . . scaffold1101 GLEAN mRNA 314987 315892 0.355682 + . ID=CGI_10023022; scaffold1101 TRF Tandem_Repeat 314987 315892 1110 + . . scaffold1101 GLEAN mRNA 317224 317574 0.355682 + . ID=CGI_10023022; scaffold1101 TRF Tandem_Repeat 317224 317574 373 + . . scaffold1101 GLEAN mRNA 317224 317574 0.355682 + . ID=CGI_10023022; scaffold1101 TRF Tandem_Repeat 317224 317574 397 + . . scaffold1101 GLEAN mRNA 370711 370899 0.569292 + . ID=CGI_10023023; scaffold1101 WUBlastX LINE_CR1-L2 370711 370899 32 + . . scaffold1101 GLEAN mRNA 370895 371110 0.569292 + . ID=CGI_10023023; scaffold1101 WUBlastX LINE_CR1-L2 370895 371110 42 + . . scaffold1101 GLEAN mRNA 384328 384374 0.569292 + . ID=CGI_10023023; scaffold1101 TRF Tandem_Repeat 384328 384374 94 + . . scaffold1101 GLEAN mRNA 424563 424911 0.794475 - . ID=CGI_10023024; scaffold1101 TRF Tandem_Repeat 424563 424911 479 + . . scaffold1101 GLEAN mRNA 432846 432903 1 + . ID=CGI_10023025; scaffold1101 TRF Tandem_Repeat 432846 432903 109 + . . scaffold1101 GLEAN mRNA 435546 435575 0.636664 + . ID=CGI_10023026; scaffold1101 TRF Tandem_Repeat 435546 435575 60 + . . scaffold1101 GLEAN mRNA 439028 439073 0.636664 + . ID=CGI_10023026; scaffold1101 TRF Tandem_Repeat 439028 439073 92 + . . scaffold1101 GLEAN mRNA 522888 522974 0.859729 + . ID=CGI_10023031; scaffold1101 TRF Tandem_Repeat 522888 522974 174 + . . scaffold1101 GLEAN mRNA 523650 523692 0.859729 + . ID=CGI_10023031; scaffold1101 TRF Tandem_Repeat 523650 523692 70 + . . scaffold1101 GLEAN mRNA 525502 525591 0.859729 + . ID=CGI_10023031; scaffold1101 TRF Tandem_Repeat 525502 525591 180 + . . scaffold1101 GLEAN mRNA 533766 533801 0.859729 + . ID=CGI_10023031; scaffold1101 TRF Tandem_Repeat 533766 533801 72 + . . scaffold1101 GLEAN mRNA 526937 527332 0.859729 + . ID=CGI_10023031; scaffold1101 WUBlastX LINE_RTE-X 526937 527332 234 - . . scaffold1101 GLEAN mRNA 527647 528003 0.859729 + . ID=CGI_10023031; scaffold1101 WUBlastX LINE_RTE-X 527647 528003 89 - . . scaffold1101 GLEAN mRNA 526934 527578 0.859729 + . ID=CGI_10023031; scaffold1101 WUBlastX LINE_RTE-X 526934 527578 178 - . . scaffold1101 GLEAN mRNA 526940 527434 0.859729 + . ID=CGI_10023031; scaffold1101 WUBlastX LINE_RTE-X 526940 527434 199 - . . scaffold1101 GLEAN mRNA 525636 526922 0.859729 + . ID=CGI_10023031; scaffold1101 WUBlastX LINE_RTE-X 525636 526922 236 - . . scaffold1101 GLEAN mRNA 527659 528369 0.859729 + . ID=CGI_10023031; scaffold1101 WUBlastX LINE_RTE-X 527659 528369 61 - . . scaffold1101 GLEAN mRNA 526248 526928 0.859729 + . ID=CGI_10023031; scaffold1101 WUBlastX LINE_RTE-X 526248 526928 238 - . . scaffold1101 GLEAN mRNA 540198 540264 0.997138 + . ID=CGI_10023032; scaffold1101 TRF Tandem_Repeat 540198 540264 125 + . . scaffold1101 GLEAN mRNA 539358 540164 0.997138 + . ID=CGI_10023032; scaffold1101 WUBlastX DNA_IS4EU 539358 540164 57 + . . scaffold1101 GLEAN mRNA 539583 540164 0.997138 + . ID=CGI_10023032; scaffold1101 WUBlastX DNA_Kolobok-IS4 539583 540164 73 + . . scaffold1101 GLEAN mRNA 540354 540479 0.997138 + . ID=CGI_10023032; scaffold1101 WUBlastX DNA_IS4EU 540354 540479 37 + . . scaffold1101 GLEAN mRNA 539772 540164 0.997138 + . ID=CGI_10023032; scaffold1101 WUBlastX DNA_IS4EU 539772 540164 88 + . . scaffold1101 GLEAN mRNA 676508 676533 0.639594 + . ID=CGI_10023033; scaffold1101 TRF Tandem_Repeat 676508 676533 52 + . . scaffold1101 GLEAN mRNA 677610 677634 0.639594 + . ID=CGI_10023033; scaffold1101 TRF Tandem_Repeat 677610 677634 50 + . . scaffold1101 GLEAN mRNA 770931 770962 0.966439 - . ID=CGI_10023034; scaffold1101 TRF Tandem_Repeat 770931 770962 64 + . . scaffold1703 GLEAN mRNA 68688 68732 0.99403 - . ID=CGI_10023038; scaffold1703 TRF Tandem_Repeat 68688 68732 90 + . . scaffold1703 GLEAN mRNA 89095 89149 1 + . ID=CGI_10023040; scaffold1703 TRF Tandem_Repeat 89095 89149 101 + . . scaffold1703 GLEAN mRNA 90919 91095 1 + . ID=CGI_10023040; scaffold1703 WUBlastX DNA_PiggyBac 90919 91095 84 + . . scaffold1703 GLEAN mRNA 92389 93513 1 + . ID=CGI_10023040; scaffold1703 WUBlastX DNA_PiggyBac 92389 93513 516 + . . scaffold1703 GLEAN mRNA 91610 91711 1 + . ID=CGI_10023040; scaffold1703 WUBlastX DNA_PiggyBac 91610 91711 29 + . . scaffold1703 GLEAN mRNA 92278 92952 1 + . ID=CGI_10023040; scaffold1703 WUBlastX DNA_PiggyBac 92278 92952 100 + . . scaffold1703 GLEAN mRNA 91646 91822 1 + . ID=CGI_10023040; scaffold1703 WUBlastX DNA_PiggyBac 91646 91822 61 + . . scaffold1703 GLEAN mRNA 112763 112792 0.591658 - . ID=CGI_10023041; scaffold1703 TRF Tandem_Repeat 112763 112792 51 + . . scaffold1703 GLEAN mRNA 123491 124082 0.591658 - . ID=CGI_10023041; scaffold1703 TRF Tandem_Repeat 123491 124082 1060 + . . scaffold1703 GLEAN mRNA 141955 141988 0.525157 - . ID=CGI_10023043; scaffold1703 TRF Tandem_Repeat 141955 141988 59 + . . scaffold1703 GLEAN mRNA 141962 142012 0.525157 - . ID=CGI_10023043; scaffold1703 TRF Tandem_Repeat 141962 142012 57 + . . scaffold1703 GLEAN mRNA 141958 142008 0.525157 - . ID=CGI_10023043; scaffold1703 TRF Tandem_Repeat 141958 142008 66 + . . scaffold1703 GLEAN mRNA 141955 142004 0.525157 - . ID=CGI_10023043; scaffold1703 TRF Tandem_Repeat 141955 142004 73 + . . scaffold1703 GLEAN mRNA 145793 146590 0.525157 - . ID=CGI_10023043; scaffold1703 TRF Tandem_Repeat 145793 146590 961 + . . scaffold1703 GLEAN mRNA 145793 146589 0.525157 - . ID=CGI_10023043; scaffold1703 TRF Tandem_Repeat 145793 146589 958 + . . scaffold1703 GLEAN mRNA 142539 143264 0.525157 - . ID=CGI_10023043; scaffold1703 WUBlastX LINE_RTE-X 142539 143264 91 + . . scaffold1703 GLEAN mRNA 152695 153045 0.525157 - . ID=CGI_10023043; scaffold1703 WUBlastX DNA_Kolobok-Hyd 152695 153111 31 - . . scaffold1703 GLEAN mRNA 147142 147819 0.525157 - . ID=CGI_10023043; scaffold1703 TRF Tandem_Repeat 147142 147819 811 + . . scaffold1703 GLEAN mRNA 195440 195577 0.999238 + . ID=CGI_10023047; scaffold1703 WUBlastX LINE_L2 195440 195577 38 + . . scaffold1703 GLEAN mRNA 209003 209113 0.77673 - . ID=CGI_10023048; scaffold1703 WUBlastX LTR_Ngaro 208850 209113 61 - . . scaffold1703 GLEAN mRNA 209150 209296 0.77673 - . ID=CGI_10023048; scaffold1703 WUBlastX LTR_Ngaro 209150 209296 70 - . . scaffold1703 GLEAN mRNA 227427 228517 0.309503 + . ID=CGI_10023049; scaffold1703 TRF Tandem_Repeat 227427 228517 1740 + . . scaffold1703 GLEAN mRNA 227427 228517 0.309503 + . ID=CGI_10023049; scaffold1703 TRF Tandem_Repeat 227427 228517 1677 + . . scaffold1703 GLEAN mRNA 229151 229180 0.309503 + . ID=CGI_10023049; scaffold1703 TRF Tandem_Repeat 229151 229180 51 + . . scaffold1703 GLEAN mRNA 221230 221904 0.309503 + . ID=CGI_10023049; scaffold1703 WUBlastX DNA_Maverick 221230 221904 393 - . . scaffold1703 GLEAN mRNA 221083 222003 0.309503 + . ID=CGI_10023049; scaffold1703 WUBlastX DNA_Maverick 221083 222003 273 - . . scaffold1703 GLEAN mRNA 222264 223553 0.309503 + . ID=CGI_10023049; scaffold1703 WUBlastX DNA_Maverick 222264 223553 140 - . . scaffold1703 GLEAN mRNA 220849 221073 0.309503 + . ID=CGI_10023049; scaffold1703 WUBlastX DNA_Maverick 220849 221073 86 - . . scaffold1703 GLEAN mRNA 222114 222893 0.309503 + . ID=CGI_10023049; scaffold1703 WUBlastX DNA_Maverick 222114 222893 59 - . . scaffold1703 GLEAN mRNA 233313 233442 0.309503 + . ID=CGI_10023049; scaffold1703 TRF Tandem_Repeat 233313 233442 176 + . . scaffold1703 GLEAN mRNA 316892 317053 0.865902 - . ID=CGI_10023053; scaffold1703 WUBlastX DNA_Sola 316781 317398 119 - . . scaffold1703 GLEAN mRNA 358670 358712 0.999162 + . ID=CGI_10023054; scaffold1703 TRF Tandem_Repeat 358670 358712 77 + . . scaffold1703 GLEAN mRNA 364232 364371 0.813492 - . ID=CGI_10023055; scaffold1703 TRF Tandem_Repeat 364232 364371 135 + . . scaffold1703 GLEAN mRNA 369413 369641 0.813492 - . ID=CGI_10023055; scaffold1703 TRF Tandem_Repeat 369413 369641 213 + . . scaffold1703 GLEAN mRNA 369524 369635 0.813492 - . ID=CGI_10023055; scaffold1703 TRF Tandem_Repeat 369524 369635 107 + . . scaffold1703 GLEAN mRNA 369417 369639 0.813492 - . ID=CGI_10023055; scaffold1703 TRF Tandem_Repeat 369417 369639 245 + . . scaffold1703 GLEAN mRNA 371817 371904 0.813492 - . ID=CGI_10023055; scaffold1703 TRF Tandem_Repeat 371817 371904 167 + . . scaffold1703 GLEAN mRNA 371995 372166 0.813492 - . ID=CGI_10023055; scaffold1703 TRF Tandem_Repeat 371995 372166 299 + . . scaffold1703 GLEAN mRNA 374232 374584 0.813492 - . ID=CGI_10023055; scaffold1703 TRF Tandem_Repeat 374232 374584 625 + . . scaffold1703 GLEAN mRNA 387969 388097 0.593129 + . ID=CGI_10023056; scaffold1703 TRF Tandem_Repeat 387969 388097 93 + . . scaffold1703 GLEAN mRNA 391391 391472 0.999884 + . ID=CGI_10023057; scaffold1703 TRF Tandem_Repeat 391391 391472 164 + . . scaffold1703 GLEAN mRNA 412340 412425 0.738334 - . ID=CGI_10023058; scaffold1703 TRF Tandem_Repeat 412340 412425 154 + . . scaffold1703 GLEAN mRNA 415346 415566 0.738334 - . ID=CGI_10023058; scaffold1703 TRF Tandem_Repeat 415346 415566 293 + . . scaffold1703 GLEAN mRNA 419399 419611 0.738334 - . ID=CGI_10023058; scaffold1703 WUBlastX LINE_RTE-BovB 419399 419611 68 + . . scaffold1703 GLEAN mRNA 418737 419051 0.738334 - . ID=CGI_10023058; scaffold1703 WUBlastX LINE_RTE-BovB 418737 419051 76 + . . scaffold1703 GLEAN mRNA 466865 467620 0.999324 - . ID=CGI_10023062; scaffold1703 WUBlastX LINE_L1-Tx1 466865 467620 149 + . . scaffold1703 GLEAN mRNA 472323 472892 0.999324 - . ID=CGI_10023062; scaffold1703 WUBlastX LINE_RTE-X 472323 472892 181 + . . scaffold1703 GLEAN mRNA 467592 470261 0.999324 - . ID=CGI_10023062; scaffold1703 WUBlastX LINE_L1-Tx1 467592 470261 878 + . . scaffold1703 GLEAN mRNA 491056 491101 0.999276 + . ID=CGI_10023063; scaffold1703 TRF Tandem_Repeat 491056 491101 92 + . . scaffold1703 GLEAN mRNA 495722 495789 0.999276 + . ID=CGI_10023063; scaffold1703 TRF Tandem_Repeat 495722 495789 109 + . . scaffold1703 GLEAN mRNA 495788 495849 0.999276 + . ID=CGI_10023063; scaffold1703 TRF Tandem_Repeat 495788 495849 124 + . . scaffold1703 GLEAN mRNA 507590 507968 0.836238 - . ID=CGI_10023064; scaffold1703 TRF Tandem_Repeat 507590 507968 501 + . . scaffold1703 GLEAN mRNA 519145 519191 0.999949 + . ID=CGI_10023065; scaffold1703 TRF Tandem_Repeat 519145 519191 94 + . . scaffold1703 GLEAN mRNA 535909 535939 0.728281 - . ID=CGI_10023066; scaffold1703 TRF Tandem_Repeat 535909 535939 62 + . . scaffold1703 GLEAN mRNA 552222 552252 0.728281 - . ID=CGI_10023066; scaffold1703 TRF Tandem_Repeat 552222 552252 53 + . . scaffold1703 GLEAN mRNA 595000 595578 0.584764 + . ID=CGI_10023068; scaffold1703 TRF Tandem_Repeat 595000 595578 838 + . . scaffold1703 GLEAN mRNA 597499 597888 0.584764 + . ID=CGI_10023068; scaffold1703 TRF Tandem_Repeat 597499 597888 352 + . . scaffold1703 GLEAN mRNA 603846 603880 0.584764 + . ID=CGI_10023068; scaffold1703 TRF Tandem_Repeat 603846 603880 52 + . . scaffold1703 GLEAN mRNA 629798 629853 0.52528 + . ID=CGI_10023071; scaffold1703 TRF Tandem_Repeat 629798 629853 112 + . . scaffold1703 GLEAN mRNA 667329 670481 0.998976 - . ID=CGI_10023072; scaffold1703 WUBlastX LTR_Gypsy 667329 670481 2596 + . . scaffold1703 GLEAN mRNA 669372 671030 0.998976 - . ID=CGI_10023072; scaffold1703 WUBlastX LTR_Gypsy 669372 671030 402 + . . scaffold1703 GLEAN mRNA 666972 670733 0.998976 - . ID=CGI_10023072; scaffold1703 WUBlastX LTR_Gypsy 666972 670733 1478 + . . scaffold432 GLEAN mRNA 14221 14368 0.958106 + . ID=CGI_10023076; scaffold432 TRF Tandem_Repeat 14221 14368 111 + . . scaffold432 GLEAN mRNA 14225 14368 0.958106 + . ID=CGI_10023076; scaffold432 TRF Tandem_Repeat 14225 14368 91 + . . scaffold432 GLEAN mRNA 16913 17108 0.958106 + . ID=CGI_10023076; scaffold432 TRF Tandem_Repeat 16913 17108 95 + . . scaffold432 GLEAN mRNA 16905 17146 0.958106 + . ID=CGI_10023076; scaffold432 TRF Tandem_Repeat 16905 17146 466 + . . scaffold432 GLEAN mRNA 16937 17172 0.958106 + . ID=CGI_10023076; scaffold432 TRF Tandem_Repeat 16937 17172 172 + . . scaffold432 GLEAN mRNA 17152 17277 0.958106 + . ID=CGI_10023076; scaffold432 TRF Tandem_Repeat 17152 17277 173 + . . scaffold432 GLEAN mRNA 31704 31761 0.958106 + . ID=CGI_10023076; scaffold432 TRF Tandem_Repeat 31704 31761 61 + . . scaffold432 GLEAN mRNA 31690 31787 0.958106 + . ID=CGI_10023076; scaffold432 TRF Tandem_Repeat 31690 31787 162 + . . scaffold432 GLEAN mRNA 48795 48838 0.980522 - . ID=CGI_10023077; scaffold432 TRF Tandem_Repeat 48795 48838 88 + . . scaffold432 GLEAN mRNA 178983 179309 0.999998 - . ID=CGI_10023085; scaffold432 TRF Tandem_Repeat 178983 179309 146 + . . scaffold432 GLEAN mRNA 178983 179324 0.999998 - . ID=CGI_10023085; scaffold432 TRF Tandem_Repeat 178983 179324 270 + . . scaffold432 GLEAN mRNA 179375 179504 0.999998 - . ID=CGI_10023085; scaffold432 TRF Tandem_Repeat 179375 179504 89 + . . scaffold432 GLEAN mRNA 179565 179766 0.999998 - . ID=CGI_10023085; scaffold432 TRF Tandem_Repeat 179565 179766 296 + . . scaffold432 GLEAN mRNA 183546 184074 0.999998 - . ID=CGI_10023085; scaffold432 TRF Tandem_Repeat 183546 184074 592 + . . scaffold432 GLEAN mRNA 183546 184074 0.999998 - . ID=CGI_10023085; scaffold432 TRF Tandem_Repeat 183546 184074 640 + . . scaffold432 GLEAN mRNA 184141 184296 0.999998 - . ID=CGI_10023085; scaffold432 TRF Tandem_Repeat 184141 184296 303 + . . scaffold432 GLEAN mRNA 186527 187233 0.999998 - . ID=CGI_10023085; scaffold432 TRF Tandem_Repeat 186527 187233 1258 + . . scaffold432 GLEAN mRNA 188956 189450 0.999998 - . ID=CGI_10023085; scaffold432 TRF Tandem_Repeat 188956 189450 740 + . . scaffold432 GLEAN mRNA 194527 194555 1 + . ID=CGI_10023086; scaffold432 TRF Tandem_Repeat 194527 194555 51 + . . scaffold432 GLEAN mRNA 195769 195770 0.999676 - . ID=CGI_10023087; scaffold432 TRF Tandem_Repeat 195731 195770 55 + . . scaffold432 GLEAN mRNA 195769 195770 0.999676 - . ID=CGI_10023087; scaffold432 TRF Tandem_Repeat 195730 195770 55 + . . scaffold432 GLEAN mRNA 215807 215850 0.994814 - . ID=CGI_10023089; scaffold432 TRF Tandem_Repeat 215807 215850 88 + . . scaffold432 GLEAN mRNA 239393 239693 0.999925 + . ID=CGI_10023091; scaffold432 TRF Tandem_Repeat 239393 239693 433 + . . scaffold432 GLEAN mRNA 241430 241664 0.999925 + . ID=CGI_10023091; scaffold432 TRF Tandem_Repeat 241430 241664 328 + . . scaffold432 GLEAN mRNA 244495 245283 0.999925 + . ID=CGI_10023091; scaffold432 WUBlastX LINE_L2 244495 245283 350 - . . scaffold432 GLEAN mRNA 244285 245301 0.999925 + . ID=CGI_10023091; scaffold432 WUBlastX LINE_L2 244285 245301 66 - . . scaffold432 GLEAN mRNA 252921 253064 0.999925 + . ID=CGI_10023091; scaffold432 TRF Tandem_Repeat 252921 253064 139 + . . scaffold432 GLEAN mRNA 254590 254733 0.999925 + . ID=CGI_10023091; scaffold432 TRF Tandem_Repeat 254590 254733 243 + . . scaffold432 GLEAN mRNA 256579 256825 0.999925 + . ID=CGI_10023091; scaffold432 TRF Tandem_Repeat 256579 256825 433 + . . scaffold432 GLEAN mRNA 245315 247345 0.999925 + . ID=CGI_10023091; scaffold432 WUBlastX LINE_L2 245315 247345 784 - . . scaffold432 GLEAN mRNA 308705 308783 0.999922 + . ID=CGI_10023095; scaffold432 TRF Tandem_Repeat 308705 308783 62 + . . scaffold432 GLEAN mRNA 313470 313948 0.468489 + . ID=CGI_10023096; scaffold432 TRF Tandem_Repeat 313470 313948 861 + . . scaffold432 GLEAN mRNA 316661 317044 0.468489 + . ID=CGI_10023096; scaffold432 TRF Tandem_Repeat 316661 317044 176 + . . scaffold432 GLEAN mRNA 316683 317067 0.468489 + . ID=CGI_10023096; scaffold432 TRF Tandem_Repeat 316683 317067 83 + . . scaffold432 GLEAN mRNA 316679 317048 0.468489 + . ID=CGI_10023096; scaffold432 TRF Tandem_Repeat 316679 317048 208 + . . scaffold432 GLEAN mRNA 316661 317046 0.468489 + . ID=CGI_10023096; scaffold432 TRF Tandem_Repeat 316661 317046 301 + . . scaffold432 GLEAN mRNA 316714 317065 0.468489 + . ID=CGI_10023096; scaffold432 TRF Tandem_Repeat 316714 317065 359 + . . scaffold432 GLEAN mRNA 316829 317070 0.468489 + . ID=CGI_10023096; scaffold432 TRF Tandem_Repeat 316829 317070 216 + . . scaffold432 GLEAN mRNA 318575 318681 0.468489 + . ID=CGI_10023096; scaffold432 TRF Tandem_Repeat 318575 318681 133 + . . scaffold432 GLEAN mRNA 321543 322287 0.468489 + . ID=CGI_10023096; scaffold432 TRF Tandem_Repeat 321543 322287 519 + . . scaffold432 GLEAN mRNA 321551 322291 0.468489 + . ID=CGI_10023096; scaffold432 TRF Tandem_Repeat 321551 322291 635 + . . scaffold432 GLEAN mRNA 321543 322312 0.468489 + . ID=CGI_10023096; scaffold432 TRF Tandem_Repeat 321543 322312 649 + . . scaffold432 GLEAN mRNA 358176 358233 1 + . ID=CGI_10023100; scaffold432 TRF Tandem_Repeat 358176 358233 116 + . . scaffold432 GLEAN mRNA 359753 359809 1 + . ID=CGI_10023100; scaffold432 TRF Tandem_Repeat 359753 359809 114 + . . scaffold432 GLEAN mRNA 369414 369463 0.544852 + . ID=CGI_10023101; scaffold432 TRF Tandem_Repeat 369414 369463 66 + . . scaffold432 GLEAN mRNA 369776 370048 0.544852 + . ID=CGI_10023101; scaffold432 WUBlastX DNA_hAT 369776 370048 48 + . . scaffold432 GLEAN mRNA 369788 369895 0.544852 + . ID=CGI_10023101; scaffold432 WUBlastX DNA_hAT 369788 369895 56 + . . scaffold432 GLEAN mRNA 370029 370154 0.544852 + . ID=CGI_10023101; scaffold432 WUBlastX DNA_hAT 370029 370154 28 + . . scaffold432 GLEAN mRNA 443519 443565 0.999226 - . ID=CGI_10023104; scaffold432 TRF Tandem_Repeat 443519 443565 53 + . . scaffold432 GLEAN mRNA 457906 457954 0.82108 - . ID=CGI_10023105; scaffold432 TRF Tandem_Repeat 457906 457954 71 + . . scaffold432 GLEAN mRNA 572633 572689 0.654509 + . ID=CGI_10023108; scaffold432 TRF Tandem_Repeat 572633 572689 114 + . . scaffold432 GLEAN mRNA 585999 586025 0.999895 + . ID=CGI_10023109; scaffold432 TRF Tandem_Repeat 585999 586025 54 + . . scaffold432 GLEAN mRNA 587886 587943 0.999895 + . ID=CGI_10023109; scaffold432 TRF Tandem_Repeat 587886 587943 116 + . . scaffold432 GLEAN mRNA 596125 596168 0.999895 + . ID=CGI_10023109; scaffold432 TRF Tandem_Repeat 596125 596168 88 + . . scaffold432 GLEAN mRNA 612172 612593 0.999676 + . ID=CGI_10023111; scaffold432 TRF Tandem_Repeat 612172 612593 332 + . . scaffold432 GLEAN mRNA 612252 612659 0.999676 + . ID=CGI_10023111; scaffold432 TRF Tandem_Repeat 612252 612659 271 + . . scaffold432 GLEAN mRNA 612384 612593 0.999676 + . ID=CGI_10023111; scaffold432 TRF Tandem_Repeat 612384 612593 271 + . . scaffold432 GLEAN mRNA 612723 612852 0.999676 + . ID=CGI_10023111; scaffold432 TRF Tandem_Repeat 612723 612852 138 + . . scaffold432 GLEAN mRNA 614966 614990 0.999676 + . ID=CGI_10023111; scaffold432 TRF Tandem_Repeat 614966 614990 50 + . . scaffold432 GLEAN mRNA 615105 615146 0.999676 + . ID=CGI_10023111; scaffold432 TRF Tandem_Repeat 615105 615146 84 + . . scaffold432 GLEAN mRNA 629466 629517 0.999676 + . ID=CGI_10023111; scaffold432 TRF Tandem_Repeat 629466 629517 104 + . . scaffold432 GLEAN mRNA 652127 652151 1 - . ID=CGI_10023114; scaffold432 TRF Tandem_Repeat 652127 652151 50 + . . scaffold432 GLEAN mRNA 674406 674493 0.748866 - . ID=CGI_10023117; scaffold432 TRF Tandem_Repeat 674406 674493 77 + . . scaffold432 GLEAN mRNA 692159 692192 1 - . ID=CGI_10023118; scaffold432 TRF Tandem_Repeat 692159 692192 50 + . . scaffold432 GLEAN mRNA 720897 721373 0.996496 - . ID=CGI_10023119; scaffold432 WUBlastX DNA_hAT 720897 721373 34 - . . scaffold432 GLEAN mRNA 724520 725299 0.996496 - . ID=CGI_10023119; scaffold432 WUBlastX DNA_hAT 724520 725299 76 - . . scaffold432 GLEAN mRNA 732447 732950 0.995435 - . ID=CGI_10023120; scaffold432 WUBlastX DNA_Crypton 732447 732950 85 - . . scaffold432 GLEAN mRNA 728706 729104 0.995435 - . ID=CGI_10023120; scaffold432 WUBlastX DNA_Crypton 728706 729104 43 - . . scaffold432 GLEAN mRNA 732124 732453 0.995435 - . ID=CGI_10023120; scaffold432 WUBlastX DNA_Crypton 732124 732453 110 - . . scaffold432 GLEAN mRNA 792919 793454 0.530191 + . ID=CGI_10023124; scaffold432 TRF Tandem_Repeat 792919 793454 549 + . . scaffold432 GLEAN mRNA 792935 793446 0.530191 + . ID=CGI_10023124; scaffold432 TRF Tandem_Repeat 792935 793446 618 + . . scaffold432 GLEAN mRNA 792990 793448 0.530191 + . ID=CGI_10023124; scaffold432 TRF Tandem_Repeat 792990 793448 248 + . . scaffold432 GLEAN mRNA 800330 800354 0.530191 + . ID=CGI_10023124; scaffold432 TRF Tandem_Repeat 800330 800354 50 + . . scaffold432 GLEAN mRNA 801064 801099 0.530191 + . ID=CGI_10023124; scaffold432 TRF Tandem_Repeat 801064 801099 63 + . . scaffold432 GLEAN mRNA 803211 803379 0.530191 + . ID=CGI_10023124; scaffold432 TRF Tandem_Repeat 803211 803379 266 + . . scaffold432 GLEAN mRNA 803358 803512 0.530191 + . ID=CGI_10023124; scaffold432 TRF Tandem_Repeat 803358 803512 135 + . . scaffold432 GLEAN mRNA 820564 820759 0.999676 + . ID=CGI_10023127; scaffold432 TRF Tandem_Repeat 820564 820759 270 + . . scaffold58 GLEAN mRNA 29017 29055 1 - . ID=CGI_10023129; scaffold58 TRF Tandem_Repeat 29017 29055 78 + . . scaffold58 GLEAN mRNA 29577 29630 1 - . ID=CGI_10023129; scaffold58 TRF Tandem_Repeat 29577 29630 108 + . . scaffold58 GLEAN mRNA 29917 29946 1 - . ID=CGI_10023129; scaffold58 TRF Tandem_Repeat 29917 29946 60 + . . scaffold58 GLEAN mRNA 31067 31948 1 - . ID=CGI_10023129; scaffold58 WUBlastX LINE_L2 31067 31948 332 + . . scaffold58 GLEAN mRNA 33958 33992 1 - . ID=CGI_10023129; scaffold58 TRF Tandem_Repeat 33958 33992 52 + . . scaffold58 GLEAN mRNA 34466 34528 1 - . ID=CGI_10023129; scaffold58 TRF Tandem_Repeat 34466 34528 117 + . . scaffold58 GLEAN mRNA 35285 35329 1 - . ID=CGI_10023129; scaffold58 TRF Tandem_Repeat 35285 35329 90 + . . scaffold58 GLEAN mRNA 52358 52435 0.999415 - . ID=CGI_10023130; scaffold58 TRF Tandem_Repeat 52358 52435 140 + . . scaffold58 GLEAN mRNA 162287 162326 0.0334817 + . ID=CGI_10023136; scaffold58 TRF Tandem_Repeat 162287 162326 80 + . . scaffold58 GLEAN mRNA 293190 293508 0.883263 - . ID=CGI_10023139; scaffold58 TRF Tandem_Repeat 293190 293508 329 + . . scaffold58 GLEAN mRNA 296545 296589 0.883263 - . ID=CGI_10023139; scaffold58 TRF Tandem_Repeat 296545 296589 63 + . . scaffold58 GLEAN mRNA 301836 301872 0.883263 - . ID=CGI_10023139; scaffold58 TRF Tandem_Repeat 301836 301872 65 + . . scaffold58 GLEAN mRNA 302436 302579 0.883263 - . ID=CGI_10023139; scaffold58 TRF Tandem_Repeat 302436 302579 209 + . . scaffold58 GLEAN mRNA 302928 303016 0.883263 - . ID=CGI_10023139; scaffold58 TRF Tandem_Repeat 302928 303016 81 + . . scaffold58 GLEAN mRNA 318627 318746 0.993467 - . ID=CGI_10023141; scaffold58 TRF Tandem_Repeat 318627 318746 231 + . . scaffold58 GLEAN mRNA 341643 341727 0.55408 - . ID=CGI_10023142; scaffold58 TRF Tandem_Repeat 341643 341727 143 + . . scaffold58 GLEAN mRNA 341649 341736 0.55408 - . ID=CGI_10023142; scaffold58 TRF Tandem_Repeat 341649 341736 86 + . . scaffold58 GLEAN mRNA 346190 346367 0.55408 - . ID=CGI_10023142; scaffold58 TRF Tandem_Repeat 346190 346367 320 + . . scaffold58 GLEAN mRNA 347178 347240 0.55408 - . ID=CGI_10023142; scaffold58 TRF Tandem_Repeat 347178 347240 126 + . . scaffold58 GLEAN mRNA 350169 350224 0.55408 - . ID=CGI_10023142; scaffold58 TRF Tandem_Repeat 350169 350224 105 + . . scaffold58 GLEAN mRNA 396268 396789 0.999985 - . ID=CGI_10023143; scaffold58 WUBlastX DNA_IS4EU 396268 396789 174 + . . scaffold58 GLEAN mRNA 396918 397139 0.999985 - . ID=CGI_10023143; scaffold58 WUBlastX DNA_IS4EU 396918 397139 139 - . . scaffold58 GLEAN mRNA 397357 398028 0.999985 - . ID=CGI_10023143; scaffold58 WUBlastX DNA_IS4EU 397357 398028 395 - . . scaffold58 GLEAN mRNA 398295 398429 0.999985 - . ID=CGI_10023143; scaffold58 WUBlastX DNA_IS4EU 398295 398429 45 - . . scaffold58 GLEAN mRNA 398241 398468 0.999985 - . ID=CGI_10023143; scaffold58 WUBlastX DNA_Kolobok-IS4 398241 398468 27 - . . scaffold58 GLEAN mRNA 395853 396140 0.999985 - . ID=CGI_10023143; scaffold58 WUBlastX DNA_IS4EU 395853 396140 42 + . . scaffold58 GLEAN mRNA 399112 399423 0.999985 - . ID=CGI_10023143; scaffold58 WUBlastX DNA_IS4EU 399112 399423 51 - . . scaffold58 GLEAN mRNA 457890 458074 0.944736 - . ID=CGI_10023145; scaffold58 TRF Tandem_Repeat 457890 458074 193 + . . scaffold58 GLEAN mRNA 457890 458074 0.944736 - . ID=CGI_10023145; scaffold58 TRF Tandem_Repeat 457890 458074 273 + . . scaffold58 GLEAN mRNA 461639 461708 0.944736 - . ID=CGI_10023145; scaffold58 TRF Tandem_Repeat 461639 461708 70 + . . scaffold58 GLEAN mRNA 462225 462267 0.944736 - . ID=CGI_10023145; scaffold58 TRF Tandem_Repeat 462225 462267 86 + . . scaffold58 GLEAN mRNA 466355 466404 0.944736 - . ID=CGI_10023145; scaffold58 TRF Tandem_Repeat 466355 466404 100 + . . scaffold58 GLEAN mRNA 467450 467495 0.944736 - . ID=CGI_10023145; scaffold58 TRF Tandem_Repeat 467450 467495 58 + . . scaffold58 GLEAN mRNA 468648 468694 0.944736 - . ID=CGI_10023145; scaffold58 TRF Tandem_Repeat 468648 468694 94 + . . scaffold58 GLEAN mRNA 460125 460685 0.944736 - . ID=CGI_10023145; scaffold58 WUBlastX DNA_Crypton 460125 460685 98 - . . scaffold58 GLEAN mRNA 460840 461019 0.944736 - . ID=CGI_10023145; scaffold58 WUBlastX DNA_Crypton 460840 461019 78 - . . scaffold58 GLEAN mRNA 460882 461451 0.944736 - . ID=CGI_10023145; scaffold58 WUBlastX DNA_Crypton 460882 461451 251 - . . scaffold58 GLEAN mRNA 508763 508881 0.999756 + . ID=CGI_10023147; scaffold58 TRF Tandem_Repeat 508763 508881 75 + . . scaffold58 GLEAN mRNA 513293 513707 0.999756 + . ID=CGI_10023147; scaffold58 TRF Tandem_Repeat 513293 513707 310 + . . scaffold58 GLEAN mRNA 513470 513713 0.999756 + . ID=CGI_10023147; scaffold58 TRF Tandem_Repeat 513470 513713 260 + . . scaffold58 GLEAN mRNA 513737 513773 0.999756 + . ID=CGI_10023147; scaffold58 TRF Tandem_Repeat 513737 513773 74 + . . scaffold58 GLEAN mRNA 514832 515127 0.999756 + . ID=CGI_10023147; scaffold58 TRF Tandem_Repeat 514832 515127 269 + . . scaffold58 GLEAN mRNA 514832 515127 0.999756 + . ID=CGI_10023147; scaffold58 TRF Tandem_Repeat 514832 515127 336 + . . scaffold58 GLEAN mRNA 520562 520837 1 - . ID=CGI_10023148; scaffold58 TRF Tandem_Repeat 520562 520837 353 + . . scaffold58 GLEAN mRNA 519936 520130 1 - . ID=CGI_10023148; scaffold58 WUBlastX DNA_hAT-Blackja 519936 520130 58 - . . scaffold58 GLEAN mRNA 553024 553050 0.584001 + . ID=CGI_10023151; scaffold58 TRF Tandem_Repeat 553024 553050 54 + . . scaffold58 GLEAN mRNA 551443 551453 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX DNA_IS4EU 550977 551453 45 - . . scaffold58 GLEAN mRNA 551443 551504 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX DNA_Kolobok-IS4 550932 551504 38 - . . scaffold58 GLEAN mRNA 551836 552198 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX DNA_Sola 551836 552198 55 + . . scaffold58 GLEAN mRNA 558416 559314 0.584001 + . ID=CGI_10023151; scaffold58 TRF Tandem_Repeat 558416 559314 1467 + . . scaffold58 GLEAN mRNA 570806 571636 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX LTR_Gypsy 570806 571636 58 - . . scaffold58 GLEAN mRNA 571010 571918 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX LTR_Gypsy 571010 571918 57 - . . scaffold58 GLEAN mRNA 564756 564896 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX DNA_TcMar-Marin 564756 564896 78 - . . scaffold58 GLEAN mRNA 566947 567576 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX LTR_Gypsy-Cigr 566947 567576 108 - . . scaffold58 GLEAN mRNA 568350 570650 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX LTR_Gypsy 568350 570650 1349 - . . scaffold58 GLEAN mRNA 567671 568333 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX LTR_Gypsy 567671 568333 69 - . . scaffold58 GLEAN mRNA 564723 564866 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX DNA_TcMar-Marin 564723 564866 76 - . . scaffold58 GLEAN mRNA 571115 571660 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX LTR_Gypsy 571115 571660 161 - . . scaffold58 GLEAN mRNA 570333 570746 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX LTR_Gypsy 570333 570746 35 - . . scaffold58 GLEAN mRNA 564678 564866 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX DNA_TcMar-Marin 564678 564866 64 - . . scaffold58 GLEAN mRNA 567173 568219 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX LTR_Gypsy-Cigr 567173 568219 286 - . . scaffold58 GLEAN mRNA 564768 564881 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX DNA_TcMar-Marin 564768 564881 83 - . . scaffold58 GLEAN mRNA 564765 565154 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX DNA_TcMar-Marin 564765 565154 37 - . . scaffold58 GLEAN mRNA 570806 571636 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 570806 571636 58 - . . scaffold58 GLEAN mRNA 571010 571918 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 571010 571918 57 - . . scaffold58 GLEAN mRNA 566947 567576 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy-Cigr 566947 567576 108 - . . scaffold58 GLEAN mRNA 568350 570650 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 568350 570650 1349 - . . scaffold58 GLEAN mRNA 567671 568333 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 567671 568333 69 - . . scaffold58 GLEAN mRNA 571115 571660 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 571115 571660 161 - . . scaffold58 GLEAN mRNA 570333 570746 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy 570333 570746 35 - . . scaffold58 GLEAN mRNA 567173 568219 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy-Cigr 567173 568219 286 - . . scaffold58 GLEAN mRNA 573930 573988 1 - . ID=CGI_10023153; scaffold58 TRF Tandem_Repeat 573930 573988 109 + . . scaffold58 GLEAN mRNA 586208 586296 0.597898 - . ID=CGI_10023154; scaffold58 TRF Tandem_Repeat 586208 586296 142 + . . scaffold58 GLEAN mRNA 586208 586296 0.597898 - . ID=CGI_10023154; scaffold58 TRF Tandem_Repeat 586208 586296 141 + . . scaffold58 GLEAN mRNA 625322 625393 1 - . ID=CGI_10023157; scaffold58 TRF Tandem_Repeat 625322 625393 90 + . . scaffold58 GLEAN mRNA 625339 625390 1 - . ID=CGI_10023157; scaffold58 TRF Tandem_Repeat 625339 625390 77 + . . scaffold58 GLEAN mRNA 652728 653068 0.648545 - . ID=CGI_10023158; scaffold58 TRF Tandem_Repeat 652728 653068 333 + . . scaffold58 GLEAN mRNA 652728 653068 0.648545 - . ID=CGI_10023158; scaffold58 TRF Tandem_Repeat 652728 653068 364 + . . scaffold58 GLEAN mRNA 653078 653600 0.648545 - . ID=CGI_10023158; scaffold58 TRF Tandem_Repeat 653078 653600 514 + . . scaffold58 GLEAN mRNA 653078 653600 0.648545 - . ID=CGI_10023158; scaffold58 TRF Tandem_Repeat 653078 653600 505 + . . scaffold58 GLEAN mRNA 653078 653600 0.648545 - . ID=CGI_10023158; scaffold58 TRF Tandem_Repeat 653078 653600 534 + . . scaffold58 GLEAN mRNA 655790 655839 0.648545 - . ID=CGI_10023158; scaffold58 TRF Tandem_Repeat 655790 655839 100 + . . scaffold58 GLEAN mRNA 656882 657103 0.648545 - . ID=CGI_10023158; scaffold58 TRF Tandem_Repeat 656882 657103 232 + . . scaffold58 GLEAN mRNA 656861 657282 0.648545 - . ID=CGI_10023158; scaffold58 TRF Tandem_Repeat 656861 657282 400 + . . scaffold58 GLEAN mRNA 657708 657957 0.648545 - . ID=CGI_10023158; scaffold58 TRF Tandem_Repeat 657708 657957 198 + . . scaffold58 GLEAN mRNA 672649 672827 1 - . ID=CGI_10023159; scaffold58 TRF Tandem_Repeat 672649 672827 216 + . . scaffold58 GLEAN mRNA 672670 672827 1 - . ID=CGI_10023159; scaffold58 TRF Tandem_Repeat 672670 672827 208 + . . scaffold58 GLEAN mRNA 691988 692732 0.999999 - . ID=CGI_10023160; scaffold58 TRF Tandem_Repeat 691988 692732 971 + . . scaffold58 GLEAN mRNA 697562 698244 0.999999 - . ID=CGI_10023160; scaffold58 TRF Tandem_Repeat 697562 698244 1168 + . . scaffold58 GLEAN mRNA 698510 698773 0.999999 - . ID=CGI_10023160; scaffold58 TRF Tandem_Repeat 698510 698773 259 + . . scaffold58 GLEAN mRNA 749690 749770 0.472398 + . ID=CGI_10023162; scaffold58 TRF Tandem_Repeat 749690 749770 153 + . . scaffold58 GLEAN mRNA 738678 738800 0.472398 + . ID=CGI_10023162; scaffold58 WUBlastX LINE_L1 738678 738800 34 + . . scaffold58 GLEAN mRNA 738720 738788 0.472398 + . ID=CGI_10023162; scaffold58 WUBlastX LINE_L1 738720 738788 38 + . . scaffold58 GLEAN mRNA 738475 738615 0.472398 + . ID=CGI_10023162; scaffold58 WUBlastX LINE_L1-Tx1 738475 738615 69 + . . scaffold58 GLEAN mRNA 738630 738845 0.472398 + . ID=CGI_10023162; scaffold58 WUBlastX LINE_L1-Tx1 738630 738845 31 + . . scaffold58 GLEAN mRNA 738782 738991 0.472398 + . ID=CGI_10023162; scaffold58 WUBlastX LINE_L1-Tx1 738782 738991 22 + . . scaffold58 GLEAN mRNA 738412 738615 0.472398 + . ID=CGI_10023162; scaffold58 WUBlastX LINE_L1-Tx1 738412 738615 31 + . . scaffold58 GLEAN mRNA 755816 757799 0.99883 + . ID=CGI_10023163; scaffold58 TRF Tandem_Repeat 755816 757799 1869 + . . scaffold58 GLEAN mRNA 755800 757799 0.99883 + . ID=CGI_10023163; scaffold58 TRF Tandem_Repeat 755800 757799 1794 + . . scaffold58 GLEAN mRNA 758641 758693 0.99883 + . ID=CGI_10023163; scaffold58 TRF Tandem_Repeat 758641 758693 97 + . . scaffold58 GLEAN mRNA 763665 763745 0.99883 + . ID=CGI_10023163; scaffold58 TRF Tandem_Repeat 763665 763745 162 + . . scaffold58 GLEAN mRNA 764852 764897 0.99883 + . ID=CGI_10023163; scaffold58 TRF Tandem_Repeat 764852 764897 85 + . . scaffold58 GLEAN mRNA 772887 773156 0.99883 + . ID=CGI_10023163; scaffold58 WUBlastX LINE_L2 772887 773156 62 + . . scaffold58 GLEAN mRNA 778454 778639 0.259197 - . ID=CGI_10023164; scaffold58 WUBlastX DNA_P 778454 778639 23 + . . scaffold58 GLEAN mRNA 784855 784916 1 + . ID=CGI_10023165; scaffold58 TRF Tandem_Repeat 784855 784916 70 + . . scaffold58 GLEAN mRNA 789088 789750 0.961454 + . ID=CGI_10023166; scaffold58 TRF Tandem_Repeat 789088 789750 1128 + . . scaffold58 GLEAN mRNA 789757 789791 0.961454 + . ID=CGI_10023166; scaffold58 TRF Tandem_Repeat 789757 789791 52 + . . scaffold58 GLEAN mRNA 794204 794950 0.961454 + . ID=CGI_10023166; scaffold58 TRF Tandem_Repeat 794204 794950 961 + . . scaffold58 GLEAN mRNA 795744 795803 0.961454 + . ID=CGI_10023166; scaffold58 TRF Tandem_Repeat 795744 795803 113 + . . scaffold58 GLEAN mRNA 801121 801267 0.961454 + . ID=CGI_10023166; scaffold58 TRF Tandem_Repeat 801121 801267 258 + . . scaffold58 GLEAN mRNA 795744 795803 1 - . ID=CGI_10023167; scaffold58 TRF Tandem_Repeat 795744 795803 113 + . . scaffold58 GLEAN mRNA 801121 801267 1 - . ID=CGI_10023167; scaffold58 TRF Tandem_Repeat 801121 801267 258 + . . scaffold602 GLEAN mRNA 42082 42128 0.909253 + . ID=CGI_10023171; scaffold602 TRF Tandem_Repeat 42082 42128 67 + . . scaffold602 GLEAN mRNA 43144 43203 0.909253 + . ID=CGI_10023171; scaffold602 TRF Tandem_Repeat 43144 43203 75 + . . scaffold602 GLEAN mRNA 41480 41851 0.909253 + . ID=CGI_10023171; scaffold602 WUBlastX LINE_RTE-X 41480 41851 159 - . . scaffold602 GLEAN mRNA 41600 42073 0.909253 + . ID=CGI_10023171; scaffold602 WUBlastX LINE_RTE-X 41600 42073 202 - . . scaffold602 GLEAN mRNA 109546 110319 0.590147 + . ID=CGI_10023173; scaffold602 WUBlastX LTR_Gypsy 109546 110319 20 + . . scaffold602 GLEAN mRNA 222149 222173 0.999992 - . ID=CGI_10023178; scaffold602 TRF Tandem_Repeat 222149 222173 50 + . . scaffold602 GLEAN mRNA 245747 245785 0.999676 - . ID=CGI_10023179; scaffold602 TRF Tandem_Repeat 245747 245785 78 + . . scaffold602 GLEAN mRNA 257360 257396 0.536175 + . ID=CGI_10023180; scaffold602 TRF Tandem_Repeat 257360 257396 74 + . . scaffold602 GLEAN mRNA 316543 317197 0.718781 - . ID=CGI_10023181; scaffold602 TRF Tandem_Repeat 316543 317197 892 + . . scaffold602 GLEAN mRNA 317204 317262 0.718781 - . ID=CGI_10023181; scaffold602 TRF Tandem_Repeat 317204 317262 55 + . . scaffold602 GLEAN mRNA 317207 317261 0.718781 - . ID=CGI_10023181; scaffold602 TRF Tandem_Repeat 317207 317261 101 + . . scaffold602 GLEAN mRNA 317204 317274 0.718781 - . ID=CGI_10023181; scaffold602 TRF Tandem_Repeat 317204 317274 70 + . . scaffold602 GLEAN mRNA 317204 317275 0.718781 - . ID=CGI_10023181; scaffold602 TRF Tandem_Repeat 317204 317275 54 + . . scaffold602 GLEAN mRNA 317211 317273 0.718781 - . ID=CGI_10023181; scaffold602 TRF Tandem_Repeat 317211 317273 63 + . . scaffold602 GLEAN mRNA 338172 338270 0.979952 + . ID=CGI_10023182; scaffold602 TRF Tandem_Repeat 338172 338270 162 + . . scaffold602 GLEAN mRNA 347222 347500 0.979952 + . ID=CGI_10023182; scaffold602 TRF Tandem_Repeat 347222 347500 356 + . . scaffold602 GLEAN mRNA 352241 352404 0.979952 + . ID=CGI_10023182; scaffold602 TRF Tandem_Repeat 352241 352404 301 + . . scaffold602 GLEAN mRNA 369076 369136 0.979952 + . ID=CGI_10023182; scaffold602 TRF Tandem_Repeat 369076 369136 122 + . . scaffold602 GLEAN mRNA 369604 369646 0.979952 + . ID=CGI_10023182; scaffold602 TRF Tandem_Repeat 369604 369646 77 + . . scaffold602 GLEAN mRNA 373669 374818 1 - . ID=CGI_10023183; scaffold602 TRF Tandem_Repeat 373669 374818 1214 + . . scaffold602 GLEAN mRNA 423057 423959 0.88084 + . ID=CGI_10023186; scaffold602 TRF Tandem_Repeat 423057 423959 1307 + . . scaffold602 GLEAN mRNA 475163 475223 0.469151 + . ID=CGI_10023189; scaffold602 TRF Tandem_Repeat 475163 475223 122 + . . scaffold602 GLEAN mRNA 480669 480708 0.469151 + . ID=CGI_10023189; scaffold602 TRF Tandem_Repeat 480669 480708 53 + . . scaffold602 GLEAN mRNA 491685 491968 0.999948 - . ID=CGI_10023191; scaffold602 TRF Tandem_Repeat 491685 491968 353 + . . scaffold602 GLEAN mRNA 497011 497046 0.999948 - . ID=CGI_10023191; scaffold602 TRF Tandem_Repeat 497011 497046 72 + . . scaffold602 GLEAN mRNA 546369 547770 0.747993 + . ID=CGI_10023194; scaffold602 TRF Tandem_Repeat 546369 547770 2243 + . . scaffold602 GLEAN mRNA 599365 599404 0.1397 + . ID=CGI_10023196; scaffold602 TRF Tandem_Repeat 599365 599404 80 + . . scaffold602 GLEAN mRNA 600857 600921 0.1397 + . ID=CGI_10023196; scaffold602 TRF Tandem_Repeat 600857 600921 112 + . . scaffold602 GLEAN mRNA 613031 613201 0.1397 + . ID=CGI_10023196; scaffold602 WUBlastX DNA_Harbinger 613031 613201 78 + . . scaffold602 GLEAN mRNA 612218 612406 0.1397 + . ID=CGI_10023196; scaffold602 WUBlastX DNA_Harbinger 612218 612406 67 + . . scaffold602 GLEAN mRNA 616312 616449 1 - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616312 616449 51 - . . scaffold602 GLEAN mRNA 616537 616797 1 - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616537 616797 200 - . . scaffold602 GLEAN mRNA 616958 617272 1 - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616958 617296 162 - . . scaffold602 GLEAN mRNA 616333 616449 1 - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616333 616449 60 - . . scaffold602 GLEAN mRNA 616528 616860 1 - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616528 616860 169 - . . scaffold602 GLEAN mRNA 616946 617272 1 - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616946 617347 62 - . . scaffold602 GLEAN mRNA 616231 616449 1 - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616231 616449 43 - . . scaffold602 GLEAN mRNA 674190 674225 0.546522 - . ID=CGI_10023199; scaffold602 TRF Tandem_Repeat 674190 674225 72 + . . scaffold602 GLEAN mRNA 678650 678700 0.546522 - . ID=CGI_10023199; scaffold602 TRF Tandem_Repeat 678650 678700 102 + . . scaffold602 GLEAN mRNA 698048 698118 0.999643 - . ID=CGI_10023200; scaffold602 TRF Tandem_Repeat 698048 698118 81 + . . scaffold602 GLEAN mRNA 698550 699269 0.999643 - . ID=CGI_10023200; scaffold602 TRF Tandem_Repeat 698550 699269 881 + . . scaffold602 GLEAN mRNA 699146 699170 0.999643 - . ID=CGI_10023200; scaffold602 TRF Tandem_Repeat 699146 699170 50 + . . scaffold602 GLEAN mRNA 708480 708520 0.999643 - . ID=CGI_10023200; scaffold602 TRF Tandem_Repeat 708480 708520 55 + . . scaffold602 GLEAN mRNA 734341 734379 0.637612 - . ID=CGI_10023202; scaffold602 TRF Tandem_Repeat 734341 734379 78 + . . scaffold602 GLEAN mRNA 749939 750003 0.637612 - . ID=CGI_10023202; scaffold602 TRF Tandem_Repeat 749939 750003 121 + . . scaffold602 GLEAN mRNA 787660 787694 0.814164 + . ID=CGI_10023204; scaffold602 TRF Tandem_Repeat 787660 787694 56 + . . scaffold602 GLEAN mRNA 794008 794142 0.814164 + . ID=CGI_10023204; scaffold602 WUBlastX LTR_Gypsy 794008 794142 72 + . . scaffold602 GLEAN mRNA 793975 794142 0.814164 + . ID=CGI_10023204; scaffold602 WUBlastX LTR_Gypsy 793975 794142 59 + . . scaffold602 GLEAN mRNA 800998 801295 1 - . ID=CGI_10023205; scaffold602 TRF Tandem_Repeat 800998 801295 587 + . . scaffold602 GLEAN mRNA 804224 804250 1 - . ID=CGI_10023206; scaffold602 TRF Tandem_Repeat 804224 804250 54 + . . scaffold602 GLEAN mRNA 818656 818822 0.650923 - . ID=CGI_10023208; scaffold602 TRF Tandem_Repeat 818656 818822 115 + . . scaffold602 GLEAN mRNA 821613 821639 0.650923 - . ID=CGI_10023208; scaffold602 TRF Tandem_Repeat 821613 821639 54 + . . scaffold602 GLEAN mRNA 824106 824295 0.650923 - . ID=CGI_10023208; scaffold602 TRF Tandem_Repeat 824106 824295 308 + . . scaffold408 GLEAN mRNA 4566 4620 0.832814 - . ID=CGI_10023209; scaffold408 TRF Tandem_Repeat 4566 4620 53 + . . scaffold408 GLEAN mRNA 4725 4759 0.832814 - . ID=CGI_10023209; scaffold408 TRF Tandem_Repeat 4725 4759 70 + . . scaffold408 GLEAN mRNA 5453 5817 0.832814 - . ID=CGI_10023209; scaffold408 TRF Tandem_Repeat 5453 5817 388 + . . scaffold408 GLEAN mRNA 5455 5817 0.832814 - . ID=CGI_10023209; scaffold408 TRF Tandem_Repeat 5455 5817 440 + . . scaffold408 GLEAN mRNA 6640 6774 0.832814 - . ID=CGI_10023209; scaffold408 TRF Tandem_Repeat 6640 6774 162 + . . scaffold408 GLEAN mRNA 9757 9785 0.832814 - . ID=CGI_10023209; scaffold408 TRF Tandem_Repeat 9757 9785 58 + . . scaffold408 GLEAN mRNA 11876 11966 0.832814 - . ID=CGI_10023209; scaffold408 TRF Tandem_Repeat 11876 11966 175 + . . scaffold408 GLEAN mRNA 22500 22545 0.994741 + . ID=CGI_10023211; scaffold408 TRF Tandem_Repeat 22500 22545 92 + . . scaffold408 GLEAN mRNA 144161 144382 0.863771 + . ID=CGI_10023222; scaffold408 TRF Tandem_Repeat 144161 144382 285 + . . scaffold408 GLEAN mRNA 146301 146375 0.863771 + . ID=CGI_10023222; scaffold408 TRF Tandem_Repeat 146301 146375 150 + . . scaffold408 GLEAN mRNA 146301 146375 0.999985 - . ID=CGI_10023223; scaffold408 TRF Tandem_Repeat 146301 146375 150 + . . scaffold408 GLEAN mRNA 153535 153585 0.784086 - . ID=CGI_10023224; scaffold408 TRF Tandem_Repeat 153535 153585 102 + . . scaffold408 GLEAN mRNA 158130 158165 1 + . ID=CGI_10023225; scaffold408 TRF Tandem_Repeat 158130 158165 72 + . . scaffold408 GLEAN mRNA 175720 175763 0.863748 - . ID=CGI_10023226; scaffold408 TRF Tandem_Repeat 175720 175763 88 + . . scaffold408 GLEAN mRNA 180929 180969 0.91332 + . ID=CGI_10023227; scaffold408 TRF Tandem_Repeat 180929 180969 66 + . . scaffold408 GLEAN mRNA 181565 181632 0.91332 + . ID=CGI_10023227; scaffold408 TRF Tandem_Repeat 181565 181632 127 + . . scaffold408 GLEAN mRNA 181670 181725 0.91332 + . ID=CGI_10023227; scaffold408 TRF Tandem_Repeat 181670 181725 55 + . . scaffold408 GLEAN mRNA 209929 211422 1 - . ID=CGI_10023230; scaffold408 TRF Tandem_Repeat 209929 211422 1694 + . . scaffold408 GLEAN mRNA 209929 211422 1 - . ID=CGI_10023230; scaffold408 TRF Tandem_Repeat 209929 211422 1711 + . . scaffold408 GLEAN mRNA 398167 398198 0.999496 - . ID=CGI_10023236; scaffold408 TRF Tandem_Repeat 398167 398198 64 + . . scaffold408 GLEAN mRNA 398880 400191 0.999496 - . ID=CGI_10023236; scaffold408 TRF Tandem_Repeat 398880 400191 2121 + . . scaffold408 GLEAN mRNA 401889 402375 0.999496 - . ID=CGI_10023236; scaffold408 TRF Tandem_Repeat 401889 402375 731 + . . scaffold408 GLEAN mRNA 404736 404880 0.999496 - . ID=CGI_10023236; scaffold408 TRF Tandem_Repeat 404736 404880 98 + . . scaffold408 GLEAN mRNA 408197 409131 0.999496 - . ID=CGI_10023236; scaffold408 TRF Tandem_Repeat 408197 409131 1420 + . . scaffold408 GLEAN mRNA 412184 412215 0.999496 - . ID=CGI_10023236; scaffold408 TRF Tandem_Repeat 412184 412215 55 + . . scaffold408 GLEAN mRNA 408197 409131 0.645696 + . ID=CGI_10023237; scaffold408 TRF Tandem_Repeat 408197 409131 1420 + . . scaffold408 GLEAN mRNA 412184 412215 0.645696 + . ID=CGI_10023237; scaffold408 TRF Tandem_Repeat 412184 412215 55 + . . scaffold408 GLEAN mRNA 417752 418126 0.645696 + . ID=CGI_10023237; scaffold408 TRF Tandem_Repeat 417752 418126 185 + . . scaffold408 GLEAN mRNA 417751 418150 0.645696 + . ID=CGI_10023237; scaffold408 TRF Tandem_Repeat 417751 418150 260 + . . scaffold408 GLEAN mRNA 417752 418168 0.645696 + . ID=CGI_10023237; scaffold408 TRF Tandem_Repeat 417752 418168 336 + . . scaffold408 GLEAN mRNA 418981 419118 0.645696 + . ID=CGI_10023237; scaffold408 TRF Tandem_Repeat 418981 419118 109 + . . scaffold408 GLEAN mRNA 424025 424066 0.840296 - . ID=CGI_10023238; scaffold408 TRF Tandem_Repeat 424025 424066 84 + . . scaffold408 GLEAN mRNA 427627 428235 0.840296 - . ID=CGI_10023238; scaffold408 WUBlastX LINE_RTE-X 427627 428235 222 - . . scaffold408 GLEAN mRNA 428244 428354 0.840296 - . ID=CGI_10023238; scaffold408 WUBlastX LINE_RTE-X 428244 428354 74 - . . scaffold408 GLEAN mRNA 506332 506333 1 + . ID=CGI_10023245; scaffold408 TRF Tandem_Repeat 506332 506380 98 + . . scaffold408 GLEAN mRNA 529390 529945 0.934238 - . ID=CGI_10023247; scaffold408 TRF Tandem_Repeat 529390 529945 312 + . . scaffold408 GLEAN mRNA 529402 529459 0.934238 - . ID=CGI_10023247; scaffold408 TRF Tandem_Repeat 529402 529459 60 + . . scaffold408 GLEAN mRNA 529390 529643 0.934238 - . ID=CGI_10023247; scaffold408 TRF Tandem_Repeat 529390 529643 271 + . . scaffold408 GLEAN mRNA 529405 529665 0.934238 - . ID=CGI_10023247; scaffold408 TRF Tandem_Repeat 529405 529665 170 + . . scaffold408 GLEAN mRNA 529526 529664 0.934238 - . ID=CGI_10023247; scaffold408 TRF Tandem_Repeat 529526 529664 124 + . . scaffold408 GLEAN mRNA 529702 529919 0.934238 - . ID=CGI_10023247; scaffold408 TRF Tandem_Repeat 529702 529919 169 + . . scaffold408 GLEAN mRNA 543372 543646 0.934238 - . ID=CGI_10023247; scaffold408 TRF Tandem_Repeat 543372 543646 363 + . . scaffold408 GLEAN mRNA 543565 543883 0.934238 - . ID=CGI_10023247; scaffold408 TRF Tandem_Repeat 543565 543883 278 + . . scaffold408 GLEAN mRNA 554120 554144 0.499918 - . ID=CGI_10023249; scaffold408 TRF Tandem_Repeat 554120 554144 50 + . . scaffold408 GLEAN mRNA 564387 564455 0.499918 - . ID=CGI_10023249; scaffold408 WUBlastX LTR_DIRS 564387 564455 20 - . . scaffold408 GLEAN mRNA 564461 564772 0.499918 - . ID=CGI_10023249; scaffold408 WUBlastX LTR_DIRS 564461 564772 45 - . . scaffold408 GLEAN mRNA 564491 564697 0.499918 - . ID=CGI_10023249; scaffold408 WUBlastX LTR_DIRS 564491 564697 84 - . . scaffold408 GLEAN mRNA 571347 571376 0.544851 + . ID=CGI_10023250; scaffold408 TRF Tandem_Repeat 571347 571376 60 + . . scaffold408 GLEAN mRNA 572181 572236 0.544851 + . ID=CGI_10023250; scaffold408 TRF Tandem_Repeat 572181 572236 112 + . . scaffold408 GLEAN mRNA 580922 580954 0.544851 + . ID=CGI_10023250; scaffold408 TRF Tandem_Repeat 580922 580954 66 + . . scaffold408 GLEAN mRNA 583117 583143 0.544851 + . ID=CGI_10023250; scaffold408 TRF Tandem_Repeat 583117 583143 54 + . . scaffold408 GLEAN mRNA 611603 611644 0.990126 - . ID=CGI_10023253; scaffold408 TRF Tandem_Repeat 611603 611644 50 + . . scaffold408 GLEAN mRNA 617814 617866 0.999959 + . ID=CGI_10023254; scaffold408 TRF Tandem_Repeat 617814 617866 106 + . . scaffold408 GLEAN mRNA 617866 617909 0.999959 + . ID=CGI_10023254; scaffold408 TRF Tandem_Repeat 617866 617909 81 + . . scaffold408 GLEAN mRNA 619230 619274 0.999959 + . ID=CGI_10023254; scaffold408 TRF Tandem_Repeat 619230 619274 90 + . . scaffold408 GLEAN mRNA 619274 619316 0.999959 + . ID=CGI_10023254; scaffold408 TRF Tandem_Repeat 619274 619316 86 + . . scaffold408 GLEAN mRNA 623660 623717 0.999959 + . ID=CGI_10023254; scaffold408 TRF Tandem_Repeat 623660 623717 116 + . . scaffold408 GLEAN mRNA 629293 630037 0.731449 - . ID=CGI_10023255; scaffold408 TRF Tandem_Repeat 629293 630037 1099 + . . scaffold408 GLEAN mRNA 629365 629470 0.731449 - . ID=CGI_10023255; scaffold408 TRF Tandem_Repeat 629365 629470 70 + . . scaffold408 GLEAN mRNA 629520 629666 0.731449 - . ID=CGI_10023255; scaffold408 TRF Tandem_Repeat 629520 629666 60 + . . scaffold408 GLEAN mRNA 632313 632339 0.731449 - . ID=CGI_10023255; scaffold408 TRF Tandem_Repeat 632313 632339 54 + . . scaffold408 GLEAN mRNA 635838 636035 0.731449 - . ID=CGI_10023255; scaffold408 TRF Tandem_Repeat 635838 636035 143 + . . scaffold408 GLEAN mRNA 636035 636170 0.731449 - . ID=CGI_10023255; scaffold408 TRF Tandem_Repeat 636035 636170 103 + . . scaffold408 GLEAN mRNA 636172 636376 0.731449 - . ID=CGI_10023255; scaffold408 TRF Tandem_Repeat 636172 636376 180 + . . scaffold408 GLEAN mRNA 637725 637767 0.731449 - . ID=CGI_10023255; scaffold408 TRF Tandem_Repeat 637725 637767 86 + . . scaffold408 GLEAN mRNA 651736 652071 1 - . ID=CGI_10023256; scaffold408 TRF Tandem_Repeat 651736 652071 158 + . . scaffold408 GLEAN mRNA 655107 655477 1 - . ID=CGI_10023256; scaffold408 TRF Tandem_Repeat 655107 655477 107 + . . scaffold408 GLEAN mRNA 655112 655453 1 - . ID=CGI_10023256; scaffold408 TRF Tandem_Repeat 655112 655453 117 + . . scaffold408 GLEAN mRNA 655125 655477 1 - . ID=CGI_10023256; scaffold408 TRF Tandem_Repeat 655125 655477 207 + . . scaffold408 GLEAN mRNA 655111 655483 1 - . ID=CGI_10023256; scaffold408 TRF Tandem_Repeat 655111 655483 258 + . . scaffold408 GLEAN mRNA 804751 804781 1 - . ID=CGI_10023265; scaffold408 TRF Tandem_Repeat 804751 804781 53 + . . scaffold695 GLEAN mRNA 6935 7005 0.716645 + . ID=CGI_10023266; scaffold695 TRF Tandem_Repeat 6935 7005 142 + . . scaffold695 GLEAN mRNA 8541 8759 0.716645 + . ID=CGI_10023266; scaffold695 WUBlastX DNA_Harbinger 8541 8759 69 - . . scaffold695 GLEAN mRNA 7118 7453 0.716645 + . ID=CGI_10023266; scaffold695 WUBlastX DNA_Harbinger 7118 7453 178 - . . scaffold695 GLEAN mRNA 82445 83156 0.999218 - . ID=CGI_10023267; scaffold695 TRF Tandem_Repeat 82445 83156 993 + . . scaffold695 GLEAN mRNA 87652 87689 0.999218 - . ID=CGI_10023267; scaffold695 TRF Tandem_Repeat 87652 87689 76 + . . scaffold695 GLEAN mRNA 90801 90854 0.999218 - . ID=CGI_10023267; scaffold695 TRF Tandem_Repeat 90801 90854 64 + . . scaffold695 GLEAN mRNA 90813 90854 0.999218 - . ID=CGI_10023267; scaffold695 TRF Tandem_Repeat 90813 90854 57 + . . scaffold695 GLEAN mRNA 93286 93399 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1 93286 93399 25 - . . scaffold695 GLEAN mRNA 90554 90781 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1 90554 90781 57 - . . scaffold695 GLEAN mRNA 90554 90730 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1 90554 90730 103 - . . scaffold695 GLEAN mRNA 89729 89935 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 89729 89935 56 - . . scaffold695 GLEAN mRNA 90259 90453 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1 90259 90453 26 - . . scaffold695 GLEAN mRNA 89935 90057 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 89935 90057 55 - . . scaffold695 GLEAN mRNA 93396 93689 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 93396 93689 36 - . . scaffold695 GLEAN mRNA 93658 93870 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 93658 93870 56 - . . scaffold695 GLEAN mRNA 89935 90108 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 89935 90108 47 - . . scaffold695 GLEAN mRNA 89553 89888 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 89553 89888 173 - . . scaffold695 GLEAN mRNA 88595 88651 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 88595 88651 20 - . . scaffold695 GLEAN mRNA 90382 90495 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 90382 90495 40 - . . scaffold695 GLEAN mRNA 90325 90444 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1 90325 90444 37 - . . scaffold695 GLEAN mRNA 88604 88663 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 88604 88663 26 - . . scaffold695 GLEAN mRNA 90590 90736 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1 90590 90736 104 - . . scaffold695 GLEAN mRNA 89200 89310 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 89200 89310 29 - . . scaffold695 GLEAN mRNA 89242 89325 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1 89242 89325 28 - . . scaffold695 GLEAN mRNA 90509 90733 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1 90509 90733 78 - . . scaffold695 GLEAN mRNA 93706 93870 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 93706 93870 83 - . . scaffold695 GLEAN mRNA 89331 89879 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 89331 89879 87 - . . scaffold695 GLEAN mRNA 89024 89170 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 89024 89170 31 - . . scaffold695 GLEAN mRNA 88747 88845 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1 88747 88845 22 - . . scaffold695 GLEAN mRNA 88607 88648 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 88607 88648 27 - . . scaffold695 GLEAN mRNA 98923 99558 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1 98923 99558 114 - . . scaffold695 GLEAN mRNA 98441 98563 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 98441 98563 39 - . . scaffold695 GLEAN mRNA 97992 98477 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1 97992 98477 66 - . . scaffold695 GLEAN mRNA 97923 98375 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 97923 98375 120 - . . scaffold695 GLEAN mRNA 97998 98387 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 97998 98387 153 - . . scaffold695 GLEAN mRNA 97836 98411 0.999218 - . ID=CGI_10023267; scaffold695 WUBlastX LINE_L1-Tx1 97836 98411 42 - . . scaffold695 GLEAN mRNA 134490 134551 0.863497 - . ID=CGI_10023268; scaffold695 TRF Tandem_Repeat 134490 134551 65 + . . scaffold695 GLEAN mRNA 142281 142367 0.999882 - . ID=CGI_10023269; scaffold695 TRF Tandem_Repeat 142281 142367 81 + . . scaffold695 GLEAN mRNA 157085 158437 0.999933 - . ID=CGI_10023270; scaffold695 TRF Tandem_Repeat 157085 158437 1422 + . . scaffold695 GLEAN mRNA 157085 158437 0.999933 - . ID=CGI_10023270; scaffold695 TRF Tandem_Repeat 157085 158437 1471 + . . scaffold695 GLEAN mRNA 157085 158437 0.999933 - . ID=CGI_10023270; scaffold695 TRF Tandem_Repeat 157085 158437 1589 + . . scaffold695 GLEAN mRNA 163210 163279 1 - . ID=CGI_10023271; scaffold695 TRF Tandem_Repeat 163210 163279 140 + . . scaffold695 GLEAN mRNA 167888 168769 1 - . ID=CGI_10023271; scaffold695 TRF Tandem_Repeat 167888 168769 978 + . . scaffold695 GLEAN mRNA 171487 171539 1 - . ID=CGI_10023271; scaffold695 TRF Tandem_Repeat 171487 171539 88 + . . scaffold695 GLEAN mRNA 192872 192938 0.999997 - . ID=CGI_10023273; scaffold695 TRF Tandem_Repeat 192872 192938 134 + . . scaffold695 GLEAN mRNA 241837 241880 0.990093 - . ID=CGI_10023276; scaffold695 TRF Tandem_Repeat 241837 241880 88 + . . scaffold695 GLEAN mRNA 240354 240434 0.990093 - . ID=CGI_10023276; scaffold695 WUBlastX DNA_Sola 240288 240434 31 - . . scaffold695 GLEAN mRNA 240416 240517 0.990093 - . ID=CGI_10023276; scaffold695 WUBlastX DNA_Sola 240416 240517 34 - . . scaffold695 GLEAN mRNA 287732 287764 1 - . ID=CGI_10023280; scaffold695 TRF Tandem_Repeat 287732 287764 57 + . . scaffold695 GLEAN mRNA 295700 295737 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 295700 295737 76 + . . scaffold695 GLEAN mRNA 302675 303104 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 302675 303104 743 + . . scaffold695 GLEAN mRNA 309470 309884 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 309470 309884 303 + . . scaffold695 GLEAN mRNA 309470 309884 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 309470 309884 369 + . . scaffold695 GLEAN mRNA 310249 310849 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 310249 310849 587 + . . scaffold695 GLEAN mRNA 310254 310849 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 310254 310849 524 + . . scaffold695 GLEAN mRNA 310249 310917 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 310249 310917 709 + . . scaffold695 GLEAN mRNA 314672 315322 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 314672 315322 144 + . . scaffold695 GLEAN mRNA 314671 315354 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 314671 315354 328 + . . scaffold695 GLEAN mRNA 314668 315327 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 314668 315327 232 + . . scaffold695 GLEAN mRNA 315804 316329 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 315804 316329 270 + . . scaffold695 GLEAN mRNA 317752 317981 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 317752 317981 135 + . . scaffold695 GLEAN mRNA 317785 318323 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 317785 318323 426 + . . scaffold695 GLEAN mRNA 317777 318014 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 317777 318014 190 + . . scaffold695 GLEAN mRNA 318751 318963 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 318751 318963 124 + . . scaffold695 GLEAN mRNA 318991 319328 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 318991 319328 220 + . . scaffold695 GLEAN mRNA 319144 319568 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 319144 319568 284 + . . scaffold695 GLEAN mRNA 327813 327864 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 327813 327864 104 + . . scaffold695 GLEAN mRNA 383367 383421 0.998896 - . ID=CGI_10023285; scaffold695 TRF Tandem_Repeat 383367 383421 110 + . . scaffold695 GLEAN mRNA 432746 432807 0.777738 - . ID=CGI_10023286; scaffold695 TRF Tandem_Repeat 432746 432807 124 + . . scaffold695 GLEAN mRNA 433436 433479 0.777738 - . ID=CGI_10023286; scaffold695 TRF Tandem_Repeat 433436 433479 88 + . . scaffold695 GLEAN mRNA 464045 464302 0.17973 - . ID=CGI_10023290; scaffold695 WUBlastX LTR_Gypsy 464045 464302 30 - . . scaffold695 GLEAN mRNA 484937 484990 0.550762 - . ID=CGI_10023292; scaffold695 TRF Tandem_Repeat 484937 484990 108 + . . scaffold695 GLEAN mRNA 643021 643068 0.97665 + . ID=CGI_10023298; scaffold695 TRF Tandem_Repeat 643021 643068 96 + . . scaffold695 GLEAN mRNA 656777 656831 0.998336 - . ID=CGI_10023300; scaffold695 TRF Tandem_Repeat 656777 656831 110 + . . scaffold695 GLEAN mRNA 664629 664676 0.998336 - . ID=CGI_10023300; scaffold695 TRF Tandem_Repeat 664629 664676 96 + . . scaffold695 GLEAN mRNA 670054 670084 0.998336 - . ID=CGI_10023300; scaffold695 TRF Tandem_Repeat 670054 670084 62 + . . scaffold695 GLEAN mRNA 677284 677355 0.998336 - . ID=CGI_10023300; scaffold695 TRF Tandem_Repeat 677284 677355 144 + . . scaffold695 GLEAN mRNA 680674 680737 0.99962 - . ID=CGI_10023301; scaffold695 TRF Tandem_Repeat 680674 680737 128 + . . scaffold695 GLEAN mRNA 684411 684474 0.99962 - . ID=CGI_10023301; scaffold695 TRF Tandem_Repeat 684411 684474 121 + . . scaffold695 GLEAN mRNA 681463 681798 0.99962 - . ID=CGI_10023301; scaffold695 WUBlastX DNA_Sola 681463 681798 176 + . . scaffold695 GLEAN mRNA 681165 681380 0.99962 - . ID=CGI_10023301; scaffold695 WUBlastX DNA_Sola 681165 681380 39 + . . scaffold695 GLEAN mRNA 688958 689014 1 - . ID=CGI_10023302; scaffold695 TRF Tandem_Repeat 688958 689014 98 + . . scaffold695 GLEAN mRNA 715010 715111 0.988963 - . ID=CGI_10023304; scaffold695 WUBlastX LINE_L1 715010 715111 26 + . . scaffold695 GLEAN mRNA 715568 716821 0.988963 - . ID=CGI_10023304; scaffold695 WUBlastX LINE_RTE-BovB 715568 716821 528 + . . scaffold695 GLEAN mRNA 715568 716179 0.988963 - . ID=CGI_10023304; scaffold695 WUBlastX LINE_RTE-BovB 715568 716179 602 + . . scaffold695 GLEAN mRNA 716797 716871 0.988963 - . ID=CGI_10023304; scaffold695 WUBlastX LINE_RTE-BovB 716797 716871 35 + . . scaffold695 GLEAN mRNA 715568 716314 0.988963 - . ID=CGI_10023304; scaffold695 WUBlastX LINE_RTE-BovB 715568 716314 559 + . . scaffold695 GLEAN mRNA 714861 714908 0.988963 - . ID=CGI_10023304; scaffold695 WUBlastX LINE_CR1 714861 714908 20 + . . scaffold695 GLEAN mRNA 772162 772186 0.995957 + . ID=CGI_10023306; scaffold695 TRF Tandem_Repeat 772162 772186 50 + . . scaffold695 GLEAN mRNA 772162 772186 1 - . ID=CGI_10023307; scaffold695 TRF Tandem_Repeat 772162 772186 50 + . . scaffold1132 GLEAN mRNA 51997 52034 0.303068 - . ID=CGI_10023311; scaffold1132 TRF Tandem_Repeat 51997 52034 60 + . . scaffold1132 GLEAN mRNA 59101 59141 0.303068 - . ID=CGI_10023311; scaffold1132 TRF Tandem_Repeat 59101 59141 82 + . . scaffold1132 GLEAN mRNA 61958 62000 0.303068 - . ID=CGI_10023311; scaffold1132 TRF Tandem_Repeat 61958 62000 86 + . . scaffold1132 GLEAN mRNA 63943 63987 0.303068 - . ID=CGI_10023311; scaffold1132 TRF Tandem_Repeat 63943 63987 90 + . . scaffold1132 GLEAN mRNA 66816 67064 0.303068 - . ID=CGI_10023311; scaffold1132 TRF Tandem_Repeat 66816 67064 172 + . . scaffold1132 GLEAN mRNA 66816 67064 0.303068 - . ID=CGI_10023311; scaffold1132 TRF Tandem_Repeat 66816 67064 172 + . . scaffold1132 GLEAN mRNA 66816 67064 0.303068 - . ID=CGI_10023311; scaffold1132 TRF Tandem_Repeat 66816 67064 172 + . . scaffold1132 GLEAN mRNA 66816 67107 0.303068 - . ID=CGI_10023311; scaffold1132 TRF Tandem_Repeat 66816 67107 172 + . . scaffold1132 GLEAN mRNA 66816 67107 0.303068 - . ID=CGI_10023311; scaffold1132 TRF Tandem_Repeat 66816 67107 159 + . . scaffold1132 GLEAN mRNA 66976 67074 0.303068 - . ID=CGI_10023311; scaffold1132 TRF Tandem_Repeat 66976 67074 70 + . . scaffold1132 GLEAN mRNA 67572 67616 0.303068 - . ID=CGI_10023311; scaffold1132 TRF Tandem_Repeat 67572 67616 90 + . . scaffold1132 GLEAN mRNA 80930 80956 0.303068 - . ID=CGI_10023311; scaffold1132 TRF Tandem_Repeat 80930 80956 54 + . . scaffold1132 GLEAN mRNA 67986 68279 0.303068 - . ID=CGI_10023311; scaffold1132 WUBlastX LINE_RTE-X 67986 68279 50 - . . scaffold1132 GLEAN mRNA 67941 68195 0.303068 - . ID=CGI_10023311; scaffold1132 WUBlastX LINE_RTE-X 67941 68195 28 - . . scaffold1132 GLEAN mRNA 67917 68372 0.303068 - . ID=CGI_10023311; scaffold1132 WUBlastX LINE_RTE-X 67917 68372 21 - . . scaffold1132 GLEAN mRNA 79529 80005 0.303068 - . ID=CGI_10023311; scaffold1132 WUBlastX LINE_L1-Tx1 79529 80005 205 + . . scaffold1132 GLEAN mRNA 79394 79897 0.303068 - . ID=CGI_10023311; scaffold1132 WUBlastX LINE_L1 79394 79897 143 + . . scaffold1132 GLEAN mRNA 106346 106558 0.995556 - . ID=CGI_10023312; scaffold1132 WUBlastX DNA_MuDR 106346 106558 43 - . . scaffold1132 GLEAN mRNA 105785 106069 0.995556 - . ID=CGI_10023312; scaffold1132 WUBlastX LINE_R2 105785 106069 30 - . . scaffold1132 GLEAN mRNA 120781 120842 0.898809 - . ID=CGI_10023313; scaffold1132 TRF Tandem_Repeat 120781 120842 61 + . . scaffold1132 GLEAN mRNA 120781 120847 0.898809 - . ID=CGI_10023313; scaffold1132 TRF Tandem_Repeat 120781 120847 66 + . . scaffold1132 GLEAN mRNA 120798 120847 0.898809 - . ID=CGI_10023313; scaffold1132 TRF Tandem_Repeat 120798 120847 82 + . . scaffold1132 GLEAN mRNA 125523 125566 0.898809 - . ID=CGI_10023313; scaffold1132 TRF Tandem_Repeat 125523 125566 88 + . . scaffold1132 GLEAN mRNA 208489 208536 0.973884 - . ID=CGI_10023314; scaffold1132 TRF Tandem_Repeat 208489 208536 96 + . . scaffold1132 GLEAN mRNA 210084 210320 0.973884 - . ID=CGI_10023314; scaffold1132 WUBlastX DNA_TcMar-Tc1 210084 210320 25 + . . scaffold1132 GLEAN mRNA 210138 210326 0.973884 - . ID=CGI_10023314; scaffold1132 WUBlastX DNA_TcMar-Tc1 210138 210326 27 + . . scaffold1132 GLEAN mRNA 210455 210826 0.973884 - . ID=CGI_10023314; scaffold1132 WUBlastX DNA_TcMar-Tc1 210455 210826 92 + . . scaffold1132 GLEAN mRNA 210524 210898 0.973884 - . ID=CGI_10023314; scaffold1132 WUBlastX DNA_TcMar-Tc1 210524 210898 78 + . . scaffold1132 GLEAN mRNA 210572 210829 0.973884 - . ID=CGI_10023314; scaffold1132 WUBlastX DNA_TcMar-Tc1 210572 210829 99 + . . scaffold1132 GLEAN mRNA 210320 210826 0.973884 - . ID=CGI_10023314; scaffold1132 WUBlastX DNA_TcMar-Tc1 210320 210826 74 + . . scaffold1132 GLEAN mRNA 220229 220276 0.973884 - . ID=CGI_10023314; scaffold1132 TRF Tandem_Repeat 220229 220276 87 + . . scaffold1132 GLEAN mRNA 326313 326629 0.805086 - . ID=CGI_10023315; scaffold1132 TRF Tandem_Repeat 326313 326629 273 + . . scaffold1132 GLEAN mRNA 334511 336553 0.805086 - . ID=CGI_10023315; scaffold1132 WUBlastX LINE_RTE-X 334511 336553 850 + . . scaffold1132 GLEAN mRNA 333766 333813 0.805086 - . ID=CGI_10023315; scaffold1132 WUBlastX LINE_CR1 333766 333813 20 + . . scaffold1132 GLEAN mRNA 411020 411250 0.671769 + . ID=CGI_10023317; scaffold1132 TRF Tandem_Repeat 411020 411250 57 + . . scaffold1132 GLEAN mRNA 411007 411245 0.671769 + . ID=CGI_10023317; scaffold1132 TRF Tandem_Repeat 411007 411245 412 + . . scaffold1132 GLEAN mRNA 416336 416386 0.743295 - . ID=CGI_10023318; scaffold1132 TRF Tandem_Repeat 416336 416386 102 + . . scaffold1132 GLEAN mRNA 424662 424796 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_RTE-X 424662 424796 63 + . . scaffold1132 GLEAN mRNA 421289 421456 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_L2 421289 421456 83 + . . scaffold1132 GLEAN mRNA 422007 423194 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_RTE-X 422007 423194 134 + . . scaffold1132 GLEAN mRNA 423805 423987 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_L1-Tx1 423805 423987 27 + . . scaffold1132 GLEAN mRNA 421649 421987 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_RTE-X 421649 421987 61 + . . scaffold1132 GLEAN mRNA 423175 423465 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_RTE-X 423175 423465 194 + . . scaffold1132 GLEAN mRNA 421706 422011 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_RTE-X 421706 422011 90 + . . scaffold1132 GLEAN mRNA 423205 423516 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_CR1 423205 423516 136 + . . scaffold1132 GLEAN mRNA 424793 424888 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_RTE-X 424793 424888 60 + . . scaffold1132 GLEAN mRNA 424141 424203 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_R1 424141 424203 26 + . . scaffold1132 GLEAN mRNA 424518 424811 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_I 424518 424811 23 + . . scaffold1132 GLEAN mRNA 421271 421528 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_L1-Tx1 421271 421528 82 + . . scaffold1132 GLEAN mRNA 424299 424394 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_R2 424299 424394 25 + . . scaffold1132 GLEAN mRNA 424897 426141 0.743295 - . ID=CGI_10023318; scaffold1132 WUBlastX LINE_RTE-X 424897 426141 601 + . . scaffold1132 GLEAN mRNA 472772 473059 1 + . ID=CGI_10023321; scaffold1132 TRF Tandem_Repeat 472772 473059 558 + . . scaffold1132 GLEAN mRNA 486503 486577 0.881647 - . ID=CGI_10023322; scaffold1132 TRF Tandem_Repeat 486503 486577 150 + . . scaffold1132 GLEAN mRNA 491903 492123 0.881647 - . ID=CGI_10023322; scaffold1132 TRF Tandem_Repeat 491903 492123 370 + . . scaffold1132 GLEAN mRNA 494227 494327 0.881647 - . ID=CGI_10023322; scaffold1132 TRF Tandem_Repeat 494227 494327 73 + . . scaffold1132 GLEAN mRNA 498501 498848 0.881647 - . ID=CGI_10023322; scaffold1132 TRF Tandem_Repeat 498501 498848 561 + . . scaffold1132 GLEAN mRNA 535116 535146 0.997312 - . ID=CGI_10023323; scaffold1132 TRF Tandem_Repeat 535116 535146 62 + . . scaffold1132 GLEAN mRNA 553362 553628 0.760962 + . ID=CGI_10023324; scaffold1132 WUBlastX DNA_TcMar-Marin 553362 553628 65 - . . scaffold1132 GLEAN mRNA 602135 602171 1 - . ID=CGI_10023325; scaffold1132 TRF Tandem_Repeat 602135 602171 74 + . . scaffold1132 GLEAN mRNA 604488 604942 1 - . ID=CGI_10023325; scaffold1132 TRF Tandem_Repeat 604488 604942 757 + . . scaffold1132 GLEAN mRNA 604947 605206 1 - . ID=CGI_10023325; scaffold1132 TRF Tandem_Repeat 604947 605206 337 + . . scaffold1132 GLEAN mRNA 617148 617224 1 - . ID=CGI_10023325; scaffold1132 TRF Tandem_Repeat 617148 617224 120 + . . scaffold1132 GLEAN mRNA 620874 620911 1 - . ID=CGI_10023325; scaffold1132 TRF Tandem_Repeat 620874 620911 76 + . . scaffold1132 GLEAN mRNA 627651 627761 1 - . ID=CGI_10023325; scaffold1132 TRF Tandem_Repeat 627651 627761 132 + . . scaffold1132 GLEAN mRNA 629690 629737 1 - . ID=CGI_10023325; scaffold1132 TRF Tandem_Repeat 629690 629737 96 + . . scaffold1132 GLEAN mRNA 632670 632722 1 - . ID=CGI_10023325; scaffold1132 TRF Tandem_Repeat 632670 632722 106 + . . scaffold1132 GLEAN mRNA 633337 633386 1 - . ID=CGI_10023325; scaffold1132 TRF Tandem_Repeat 633337 633386 100 + . . scaffold1132 GLEAN mRNA 634747 634794 1 - . ID=CGI_10023325; scaffold1132 TRF Tandem_Repeat 634747 634794 96 + . . scaffold1132 GLEAN mRNA 634792 634857 1 - . ID=CGI_10023325; scaffold1132 TRF Tandem_Repeat 634792 634857 73 + . . scaffold1132 GLEAN mRNA 668991 669028 0.999393 - . ID=CGI_10023326; scaffold1132 TRF Tandem_Repeat 668991 669028 51 + . . scaffold1132 GLEAN mRNA 720247 720516 0.813716 - . ID=CGI_10023330; scaffold1132 WUBlastX LTR_Gypsy 720247 720516 81 - . . scaffold1132 GLEAN mRNA 718827 719204 0.813716 - . ID=CGI_10023330; scaffold1132 WUBlastX LTR_Gypsy 718827 719204 95 - . . scaffold1132 GLEAN mRNA 718758 719192 0.813716 - . ID=CGI_10023330; scaffold1132 WUBlastX LTR_Gypsy 718758 719192 45 - . . scaffold1132 GLEAN mRNA 719472 719555 0.813716 - . ID=CGI_10023330; scaffold1132 WUBlastX LTR_Gypsy 719472 719555 20 - . . scaffold1132 GLEAN mRNA 718758 719291 0.813716 - . ID=CGI_10023330; scaffold1132 WUBlastX LTR_Gypsy 718758 719291 28 - . . scaffold1132 GLEAN mRNA 801694 801740 0.996081 + . ID=CGI_10023335; scaffold1132 TRF Tandem_Repeat 801694 801740 94 + . . scaffold1132 GLEAN mRNA 816647 816770 1 - . ID=CGI_10023337; scaffold1132 TRF Tandem_Repeat 816647 816770 62 + . . scaffold1605 GLEAN mRNA 12951 12994 0.727003 - . ID=CGI_10023340; scaffold1605 TRF Tandem_Repeat 12951 12994 88 + . . scaffold1605 GLEAN mRNA 12437 12709 0.727003 - . ID=CGI_10023340; scaffold1605 WUBlastX LINE_L2 12437 12709 33 - . . scaffold1605 GLEAN mRNA 19214 19246 0.997192 - . ID=CGI_10023342; scaffold1605 TRF Tandem_Repeat 19214 19246 66 + . . scaffold1605 GLEAN mRNA 21041 21189 0.997192 - . ID=CGI_10023342; scaffold1605 TRF Tandem_Repeat 21041 21189 79 + . . scaffold1605 GLEAN mRNA 22195 22977 0.997192 - . ID=CGI_10023342; scaffold1605 TRF Tandem_Repeat 22195 22977 693 + . . scaffold1605 GLEAN mRNA 53509 53865 1 - . ID=CGI_10023343; scaffold1605 WUBlastX DNA_hAT 53509 53865 117 - . . scaffold1605 GLEAN mRNA 60865 60903 0.682759 + . ID=CGI_10023345; scaffold1605 TRF Tandem_Repeat 60865 60903 78 + . . scaffold1605 GLEAN mRNA 97058 97381 0.910604 + . ID=CGI_10023348; scaffold1605 WUBlastX LINE_Telomeric 97058 97381 35 + . . scaffold1605 GLEAN mRNA 128892 128920 0.544845 + . ID=CGI_10023350; scaffold1605 TRF Tandem_Repeat 128892 128920 58 + . . scaffold1605 GLEAN mRNA 207184 207220 0.273274 + . ID=CGI_10023352; scaffold1605 TRF Tandem_Repeat 207184 207220 74 + . . scaffold1605 GLEAN mRNA 258917 258965 0.44789 + . ID=CGI_10023353; scaffold1605 TRF Tandem_Repeat 258917 258965 98 + . . scaffold1605 GLEAN mRNA 259922 259958 0.44789 + . ID=CGI_10023353; scaffold1605 TRF Tandem_Repeat 259922 259958 74 + . . scaffold1605 GLEAN mRNA 285343 285372 0.997947 - . ID=CGI_10023356; scaffold1605 TRF Tandem_Repeat 285343 285372 60 + . . scaffold1605 GLEAN mRNA 285681 285738 0.997947 - . ID=CGI_10023356; scaffold1605 TRF Tandem_Repeat 285681 285738 116 + . . scaffold1605 GLEAN mRNA 314679 314728 0.999834 + . ID=CGI_10023358; scaffold1605 TRF Tandem_Repeat 314679 314728 100 + . . scaffold1605 GLEAN mRNA 315804 315837 0.999834 + . ID=CGI_10023358; scaffold1605 TRF Tandem_Repeat 315804 315837 50 + . . scaffold1605 GLEAN mRNA 379923 379961 1 - . ID=CGI_10023361; scaffold1605 TRF Tandem_Repeat 379923 379961 78 + . . scaffold1605 GLEAN mRNA 394434 395084 0.498916 - . ID=CGI_10023362; scaffold1605 TRF Tandem_Repeat 394434 395084 1214 + . . scaffold1605 GLEAN mRNA 420580 421086 0.394042 + . ID=CGI_10023364; scaffold1605 TRF Tandem_Repeat 420580 421086 447 + . . scaffold1605 GLEAN mRNA 420580 421015 0.394042 + . ID=CGI_10023364; scaffold1605 TRF Tandem_Repeat 420580 421015 460 + . . scaffold1605 GLEAN mRNA 428334 428512 0.394042 + . ID=CGI_10023364; scaffold1605 TRF Tandem_Repeat 428334 428512 256 + . . scaffold1605 GLEAN mRNA 420580 421086 1 - . ID=CGI_10023365; scaffold1605 TRF Tandem_Repeat 420580 421086 447 + . . scaffold1605 GLEAN mRNA 420580 421015 1 - . ID=CGI_10023365; scaffold1605 TRF Tandem_Repeat 420580 421015 460 + . . scaffold1605 GLEAN mRNA 469958 470834 0.984678 - . ID=CGI_10023369; scaffold1605 TRF Tandem_Repeat 469958 470834 1368 + . . scaffold1605 GLEAN mRNA 472667 473494 0.984678 - . ID=CGI_10023369; scaffold1605 TRF Tandem_Repeat 472667 473494 1217 + . . scaffold1605 GLEAN mRNA 619794 619986 1 + . ID=CGI_10023380; scaffold1605 TRF Tandem_Repeat 619794 619986 289 + . . scaffold1605 GLEAN mRNA 620387 620421 1 + . ID=CGI_10023380; scaffold1605 TRF Tandem_Repeat 620387 620421 52 + . . scaffold1605 GLEAN mRNA 700116 700402 0.673314 - . ID=CGI_10023387; scaffold1605 TRF Tandem_Repeat 700116 700402 351 + . . scaffold1605 GLEAN mRNA 710103 710171 0.673314 - . ID=CGI_10023387; scaffold1605 TRF Tandem_Repeat 710103 710171 138 + . . scaffold1605 GLEAN mRNA 711804 711851 0.673314 - . ID=CGI_10023387; scaffold1605 TRF Tandem_Repeat 711804 711851 87 + . . scaffold1605 GLEAN mRNA 722212 722298 0.673314 - . ID=CGI_10023387; scaffold1605 TRF Tandem_Repeat 722212 722298 72 + . . scaffold1605 GLEAN mRNA 730861 731008 0.673314 - . ID=CGI_10023387; scaffold1605 TRF Tandem_Repeat 730861 731008 81 + . . scaffold1605 GLEAN mRNA 730965 731033 0.673314 - . ID=CGI_10023387; scaffold1605 TRF Tandem_Repeat 730965 731033 52 + . . scaffold1605 GLEAN mRNA 730935 731046 0.673314 - . ID=CGI_10023387; scaffold1605 TRF Tandem_Repeat 730935 731046 76 + . . scaffold1605 GLEAN mRNA 730935 731095 0.673314 - . ID=CGI_10023387; scaffold1605 TRF Tandem_Repeat 730935 731095 91 + . . scaffold1605 GLEAN mRNA 730964 731037 0.673314 - . ID=CGI_10023387; scaffold1605 TRF Tandem_Repeat 730964 731037 60 + . . scaffold1605 GLEAN mRNA 731702 732067 0.673314 - . ID=CGI_10023387; scaffold1605 WUBlastX DNA_hAT 731702 732067 122 - . . scaffold1605 GLEAN mRNA 737423 737456 0.673314 - . ID=CGI_10023387; scaffold1605 TRF Tandem_Repeat 737423 737456 61 + . . scaffold1605 GLEAN mRNA 737423 737456 0.768707 + . ID=CGI_10023389; scaffold1605 TRF Tandem_Repeat 737423 737456 61 + . . scaffold1605 GLEAN mRNA 796873 796935 0.836191 + . ID=CGI_10023393; scaffold1605 TRF Tandem_Repeat 796873 796935 126 + . . scaffold625 GLEAN mRNA 25208 25234 0.969836 - . ID=CGI_10023394; scaffold625 TRF Tandem_Repeat 25208 25234 54 + . . scaffold625 GLEAN mRNA 27822 27990 0.969836 - . ID=CGI_10023394; scaffold625 TRF Tandem_Repeat 27822 27990 209 + . . scaffold625 GLEAN mRNA 27818 27996 0.969836 - . ID=CGI_10023394; scaffold625 TRF Tandem_Repeat 27818 27996 250 + . . scaffold625 GLEAN mRNA 27908 27985 0.969836 - . ID=CGI_10023394; scaffold625 TRF Tandem_Repeat 27908 27985 54 + . . scaffold625 GLEAN mRNA 31272 31303 0.969836 - . ID=CGI_10023394; scaffold625 TRF Tandem_Repeat 31272 31303 55 + . . scaffold625 GLEAN mRNA 32779 33275 0.969836 - . ID=CGI_10023394; scaffold625 TRF Tandem_Repeat 32779 33275 748 + . . scaffold625 GLEAN mRNA 51315 51469 0.999107 + . ID=CGI_10023395; scaffold625 TRF Tandem_Repeat 51315 51469 283 + . . scaffold625 GLEAN mRNA 56958 56998 0.999107 + . ID=CGI_10023395; scaffold625 TRF Tandem_Repeat 56958 56998 50 + . . scaffold625 GLEAN mRNA 59632 59672 0.999107 + . ID=CGI_10023395; scaffold625 TRF Tandem_Repeat 59632 59672 50 + . . scaffold625 GLEAN mRNA 64831 65205 0.101218 + . ID=CGI_10023396; scaffold625 WUBlastX LTR_Gypsy 64831 65205 83 + . . scaffold625 GLEAN mRNA 77573 77605 0.990769 - . ID=CGI_10023398; scaffold625 TRF Tandem_Repeat 77573 77605 57 + . . scaffold625 GLEAN mRNA 95079 95235 1 + . ID=CGI_10023401; scaffold625 TRF Tandem_Repeat 95079 95235 126 + . . scaffold625 GLEAN mRNA 95241 95473 1 + . ID=CGI_10023401; scaffold625 TRF Tandem_Repeat 95241 95473 164 + . . scaffold625 GLEAN mRNA 95241 95564 1 + . ID=CGI_10023401; scaffold625 TRF Tandem_Repeat 95241 95564 176 + . . scaffold625 GLEAN mRNA 95479 95564 1 + . ID=CGI_10023401; scaffold625 TRF Tandem_Repeat 95479 95564 101 + . . scaffold625 GLEAN mRNA 98945 99953 1 + . ID=CGI_10023401; scaffold625 TRF Tandem_Repeat 98945 99953 1013 + . . scaffold625 GLEAN mRNA 95079 95235 0.920951 - . ID=CGI_10023402; scaffold625 TRF Tandem_Repeat 95079 95235 126 + . . scaffold625 GLEAN mRNA 95241 95473 0.920951 - . ID=CGI_10023402; scaffold625 TRF Tandem_Repeat 95241 95473 164 + . . scaffold625 GLEAN mRNA 95241 95564 0.920951 - . ID=CGI_10023402; scaffold625 TRF Tandem_Repeat 95241 95564 176 + . . scaffold625 GLEAN mRNA 95479 95564 0.920951 - . ID=CGI_10023402; scaffold625 TRF Tandem_Repeat 95479 95564 101 + . . scaffold625 GLEAN mRNA 98945 99953 0.920951 - . ID=CGI_10023402; scaffold625 TRF Tandem_Repeat 98945 99953 1013 + . . scaffold625 GLEAN mRNA 142673 144114 0.204094 + . ID=CGI_10023406; scaffold625 TRF Tandem_Repeat 142673 144114 1521 + . . scaffold625 GLEAN mRNA 143176 143444 0.204094 + . ID=CGI_10023406; scaffold625 TRF Tandem_Repeat 143176 143444 70 + . . scaffold625 GLEAN mRNA 153355 153391 0.983385 + . ID=CGI_10023407; scaffold625 TRF Tandem_Repeat 153355 153391 65 + . . scaffold625 GLEAN mRNA 160269 160492 0.983385 + . ID=CGI_10023407; scaffold625 TRF Tandem_Repeat 160269 161572 2093 + . . scaffold625 GLEAN mRNA 197963 198310 0.941643 + . ID=CGI_10023408; scaffold625 TRF Tandem_Repeat 197963 198310 209 + . . scaffold625 GLEAN mRNA 197971 198228 0.941643 + . ID=CGI_10023408; scaffold625 TRF Tandem_Repeat 197971 198228 241 + . . scaffold625 GLEAN mRNA 198352 198617 0.941643 + . ID=CGI_10023408; scaffold625 TRF Tandem_Repeat 198352 198617 176 + . . scaffold625 GLEAN mRNA 198327 198740 0.941643 + . ID=CGI_10023408; scaffold625 TRF Tandem_Repeat 198327 198740 250 + . . scaffold625 GLEAN mRNA 237158 237195 1 + . ID=CGI_10023410; scaffold625 TRF Tandem_Repeat 237158 237195 69 + . . scaffold625 GLEAN mRNA 240807 240851 1 + . ID=CGI_10023410; scaffold625 TRF Tandem_Repeat 240807 240851 81 + . . scaffold625 GLEAN mRNA 245914 246060 1 + . ID=CGI_10023410; scaffold625 TRF Tandem_Repeat 245914 246060 73 + . . scaffold625 GLEAN mRNA 245976 246124 1 + . ID=CGI_10023410; scaffold625 TRF Tandem_Repeat 245976 246124 97 + . . scaffold625 GLEAN mRNA 247704 247834 1 + . ID=CGI_10023410; scaffold625 TRF Tandem_Repeat 247704 247834 244 + . . scaffold625 GLEAN mRNA 251928 252182 1 + . ID=CGI_10023410; scaffold625 TRF Tandem_Repeat 251928 252919 1334 + . . scaffold625 GLEAN mRNA 251928 252182 1 + . ID=CGI_10023410; scaffold625 TRF Tandem_Repeat 251928 252921 1472 + . . scaffold625 GLEAN mRNA 310209 310245 1 + . ID=CGI_10023412; scaffold625 TRF Tandem_Repeat 310209 310245 56 + . . scaffold625 GLEAN mRNA 317466 317502 0.999996 + . ID=CGI_10023413; scaffold625 TRF Tandem_Repeat 317466 317502 74 + . . scaffold625 GLEAN mRNA 318127 318447 0.999996 + . ID=CGI_10023413; scaffold625 TRF Tandem_Repeat 318127 318447 462 + . . scaffold625 GLEAN mRNA 318127 318447 0.999996 + . ID=CGI_10023413; scaffold625 TRF Tandem_Repeat 318127 318447 545 + . . scaffold625 GLEAN mRNA 318590 318669 0.999996 + . ID=CGI_10023413; scaffold625 TRF Tandem_Repeat 318590 318669 133 + . . scaffold625 GLEAN mRNA 323266 323316 0.999996 + . ID=CGI_10023413; scaffold625 TRF Tandem_Repeat 323266 323316 102 + . . scaffold625 GLEAN mRNA 326827 327824 0.999996 + . ID=CGI_10023413; scaffold625 TRF Tandem_Repeat 326827 327824 1732 + . . scaffold625 GLEAN mRNA 336114 337110 0.993907 - . ID=CGI_10023414; scaffold625 TRF Tandem_Repeat 336114 337110 1895 + . . scaffold625 GLEAN mRNA 338847 339388 0.993907 - . ID=CGI_10023414; scaffold625 TRF Tandem_Repeat 338847 339388 205 + . . scaffold625 GLEAN mRNA 339148 339465 0.993907 - . ID=CGI_10023414; scaffold625 TRF Tandem_Repeat 339148 339465 384 + . . scaffold625 GLEAN mRNA 339606 340438 0.993907 - . ID=CGI_10023414; scaffold625 TRF Tandem_Repeat 339606 340438 1199 + . . scaffold625 GLEAN mRNA 339600 340747 0.993907 - . ID=CGI_10023414; scaffold625 TRF Tandem_Repeat 339600 340747 1046 + . . scaffold625 GLEAN mRNA 340541 340734 0.993907 - . ID=CGI_10023414; scaffold625 TRF Tandem_Repeat 340541 340734 309 + . . scaffold625 GLEAN mRNA 341223 341743 0.993907 - . ID=CGI_10023414; scaffold625 TRF Tandem_Repeat 341223 341743 171 + . . scaffold625 GLEAN mRNA 341866 341923 0.993907 - . ID=CGI_10023414; scaffold625 TRF Tandem_Repeat 341866 341923 116 + . . scaffold625 GLEAN mRNA 341921 341959 0.993907 - . ID=CGI_10023414; scaffold625 TRF Tandem_Repeat 341921 341959 69 + . . scaffold625 GLEAN mRNA 391354 391359 0.772897 - . ID=CGI_10023416; scaffold625 TRF Tandem_Repeat 391227 391359 225 + . . scaffold625 GLEAN mRNA 437743 437987 0.632926 + . ID=CGI_10023417; scaffold625 TRF Tandem_Repeat 437743 437987 287 + . . scaffold625 GLEAN mRNA 441300 441417 0.632926 + . ID=CGI_10023417; scaffold625 TRF Tandem_Repeat 441300 441417 191 + . . scaffold625 GLEAN mRNA 447026 447073 0.632926 + . ID=CGI_10023417; scaffold625 TRF Tandem_Repeat 447026 447073 96 + . . scaffold625 GLEAN mRNA 452796 453040 0.632926 + . ID=CGI_10023417; scaffold625 TRF Tandem_Repeat 452796 453040 355 + . . scaffold625 GLEAN mRNA 466062 466116 0.980546 - . ID=CGI_10023418; scaffold625 TRF Tandem_Repeat 466062 466116 110 + . . scaffold625 GLEAN mRNA 466874 467107 0.980546 - . ID=CGI_10023418; scaffold625 TRF Tandem_Repeat 466874 467107 405 + . . scaffold625 GLEAN mRNA 471436 471462 0.980546 - . ID=CGI_10023418; scaffold625 TRF Tandem_Repeat 471436 471462 54 + . . scaffold625 GLEAN mRNA 472351 472402 0.980546 - . ID=CGI_10023418; scaffold625 TRF Tandem_Repeat 472351 472402 50 + . . scaffold625 GLEAN mRNA 472622 472770 0.980546 - . ID=CGI_10023418; scaffold625 TRF Tandem_Repeat 472622 472770 86 + . . scaffold625 GLEAN mRNA 472686 472817 0.980546 - . ID=CGI_10023418; scaffold625 TRF Tandem_Repeat 472686 472817 61 + . . scaffold625 GLEAN mRNA 473816 474552 0.980546 - . ID=CGI_10023418; scaffold625 TRF Tandem_Repeat 473816 474552 721 + . . scaffold625 GLEAN mRNA 480501 480679 0.980546 - . ID=CGI_10023418; scaffold625 TRF Tandem_Repeat 480501 480679 238 + . . scaffold625 GLEAN mRNA 496300 496509 0.999676 - . ID=CGI_10023420; scaffold625 WUBlastX LINE_RTE-BovB 496300 496509 37 + . . scaffold625 GLEAN mRNA 562066 562102 0.999407 + . ID=CGI_10023424; scaffold625 TRF Tandem_Repeat 562066 562102 74 + . . scaffold625 GLEAN mRNA 593872 594018 0.872449 - . ID=CGI_10023425; scaffold625 TRF Tandem_Repeat 593872 594018 113 + . . scaffold625 GLEAN mRNA 605517 605955 0.872449 - . ID=CGI_10023425; scaffold625 TRF Tandem_Repeat 605517 605955 587 + . . scaffold625 GLEAN mRNA 600761 601024 0.872449 - . ID=CGI_10023425; scaffold625 WUBlastX LINE_CR1-L2 600761 601024 64 - . . scaffold625 GLEAN mRNA 601027 602493 0.872449 - . ID=CGI_10023425; scaffold625 WUBlastX LINE_L2 601027 602493 881 - . . scaffold625 GLEAN mRNA 601375 602718 0.872449 - . ID=CGI_10023425; scaffold625 WUBlastX LINE_Jockey 601375 602718 208 - . . scaffold625 GLEAN mRNA 610485 611267 0.872449 - . ID=CGI_10023425; scaffold625 TRF Tandem_Repeat 610485 611267 846 + . . scaffold625 GLEAN mRNA 610514 611267 0.872449 - . ID=CGI_10023425; scaffold625 TRF Tandem_Repeat 610514 611267 1011 + . . scaffold625 GLEAN mRNA 593872 594018 0.878872 + . ID=CGI_10023426; scaffold625 TRF Tandem_Repeat 593872 594018 113 + . . scaffold625 GLEAN mRNA 605517 605955 0.878872 + . ID=CGI_10023426; scaffold625 TRF Tandem_Repeat 605517 605955 587 + . . scaffold625 GLEAN mRNA 600761 601024 0.878872 + . ID=CGI_10023426; scaffold625 WUBlastX LINE_CR1-L2 600761 601024 64 - . . scaffold625 GLEAN mRNA 601027 602493 0.878872 + . ID=CGI_10023426; scaffold625 WUBlastX LINE_L2 601027 602493 881 - . . scaffold625 GLEAN mRNA 601375 602718 0.878872 + . ID=CGI_10023426; scaffold625 WUBlastX LINE_Jockey 601375 602718 208 - . . scaffold625 GLEAN mRNA 610485 611267 0.878872 + . ID=CGI_10023426; scaffold625 TRF Tandem_Repeat 610485 611267 846 + . . scaffold625 GLEAN mRNA 610514 611267 0.878872 + . ID=CGI_10023426; scaffold625 TRF Tandem_Repeat 610514 611267 1011 + . . scaffold625 GLEAN mRNA 625755 625825 0.878872 + . ID=CGI_10023426; scaffold625 TRF Tandem_Repeat 625755 625825 76 + . . scaffold625 GLEAN mRNA 665218 665302 0.820405 - . ID=CGI_10023430; scaffold625 TRF Tandem_Repeat 665218 665302 116 + . . scaffold625 GLEAN mRNA 669060 669629 0.820405 - . ID=CGI_10023430; scaffold625 WUBlastX LINE_L1-Tx1 669060 669629 48 - . . scaffold625 GLEAN mRNA 669258 669542 0.820405 - . ID=CGI_10023430; scaffold625 WUBlastX LINE_L1 669258 669542 82 - . . scaffold625 GLEAN mRNA 669180 669491 0.820405 - . ID=CGI_10023430; scaffold625 WUBlastX LINE_L1-Tx1 669180 669491 139 - . . scaffold625 GLEAN mRNA 669048 669491 0.820405 - . ID=CGI_10023430; scaffold625 WUBlastX LINE_L1-Tx1 669048 669491 109 - . . scaffold625 GLEAN mRNA 676917 676990 0.999676 + . ID=CGI_10023431; scaffold625 TRF Tandem_Repeat 676917 676990 103 + . . scaffold625 GLEAN mRNA 679685 679732 0.999676 + . ID=CGI_10023431; scaffold625 TRF Tandem_Repeat 679685 679732 78 + . . scaffold625 GLEAN mRNA 680866 681636 0.999676 + . ID=CGI_10023431; scaffold625 TRF Tandem_Repeat 680866 681636 950 + . . scaffold625 GLEAN mRNA 681014 681741 0.999676 + . ID=CGI_10023431; scaffold625 TRF Tandem_Repeat 681014 681741 991 + . . scaffold625 GLEAN mRNA 693355 693689 0.879994 - . ID=CGI_10023433; scaffold625 TRF Tandem_Repeat 693355 693689 438 + . . scaffold625 GLEAN mRNA 701257 701316 0.879994 - . ID=CGI_10023433; scaffold625 TRF Tandem_Repeat 701257 701316 120 + . . scaffold625 GLEAN mRNA 696091 696615 0.879994 - . ID=CGI_10023433; scaffold625 WUBlastX DNA_IS 696091 696615 803 + . . scaffold625 GLEAN mRNA 728962 729013 0.993582 - . ID=CGI_10023435; scaffold625 TRF Tandem_Repeat 728962 729013 104 + . . scaffold625 GLEAN mRNA 733091 733318 0.993582 - . ID=CGI_10023435; scaffold625 TRF Tandem_Repeat 733091 733318 420 + . . scaffold625 GLEAN mRNA 742094 742509 0.999978 - . ID=CGI_10023436; scaffold625 TRF Tandem_Repeat 742094 742509 530 + . . scaffold625 GLEAN mRNA 760829 761002 0.999954 - . ID=CGI_10023437; scaffold625 WUBlastX LTR_Gypsy 760829 761002 48 - . . scaffold625 GLEAN mRNA 762204 762314 0.999954 - . ID=CGI_10023437; scaffold625 WUBlastX LTR_Gypsy 762204 762314 25 - . . scaffold625 GLEAN mRNA 807361 807428 0.999676 + . ID=CGI_10023441; scaffold625 TRF Tandem_Repeat 807361 807428 127 + . . scaffold625 GLEAN mRNA 807969 808297 0.999676 + . ID=CGI_10023441; scaffold625 TRF Tandem_Repeat 807969 808297 394 + . . scaffold625 GLEAN mRNA 807969 808297 0.999676 + . ID=CGI_10023441; scaffold625 TRF Tandem_Repeat 807969 808297 414 + . . scaffold625 GLEAN mRNA 808830 809765 0.999676 + . ID=CGI_10023441; scaffold625 TRF Tandem_Repeat 808830 809765 1366 + . . scaffold1149 GLEAN mRNA 7761 8104 0.981658 - . ID=CGI_10023443; scaffold1149 TRF Tandem_Repeat 7761 8104 566 + . . scaffold1149 GLEAN mRNA 8861 8992 0.981658 - . ID=CGI_10023443; scaffold1149 TRF Tandem_Repeat 8861 8992 228 + . . scaffold1149 GLEAN mRNA 14907 14965 0.99999 + . ID=CGI_10023444; scaffold1149 TRF Tandem_Repeat 14907 14965 118 + . . scaffold1149 GLEAN mRNA 15233 15283 0.99999 + . ID=CGI_10023444; scaffold1149 TRF Tandem_Repeat 15233 15283 102 + . . scaffold1149 GLEAN mRNA 30652 31031 0.725879 - . ID=CGI_10023446; scaffold1149 TRF Tandem_Repeat 30652 31031 598 + . . scaffold1149 GLEAN mRNA 45244 45281 0.42199 + . ID=CGI_10023447; scaffold1149 TRF Tandem_Repeat 45244 45281 58 + . . scaffold1149 GLEAN mRNA 39706 39978 0.42199 + . ID=CGI_10023447; scaffold1149 WUBlastX LINE_Penelope 39706 39978 73 + . . scaffold1149 GLEAN mRNA 39439 39978 0.42199 + . ID=CGI_10023447; scaffold1149 WUBlastX LINE_Penelope 39439 39978 69 + . . scaffold1149 GLEAN mRNA 51953 52572 0.42199 + . ID=CGI_10023447; scaffold1149 TRF Tandem_Repeat 51953 52572 925 + . . scaffold1149 GLEAN mRNA 85514 85774 0.593391 - . ID=CGI_10023450; scaffold1149 WUBlastX LINE_L2 85514 85774 24 - . . scaffold1149 GLEAN mRNA 126480 126605 0.531581 + . ID=CGI_10023452; scaffold1149 WUBlastX LTR_Ngaro 126480 126605 58 + . . scaffold1149 GLEAN mRNA 126626 126865 0.531581 + . ID=CGI_10023452; scaffold1149 WUBlastX LTR_Ngaro 126626 126865 78 + . . scaffold1149 GLEAN mRNA 126659 126955 0.531581 + . ID=CGI_10023452; scaffold1149 WUBlastX LTR_Ngaro 126659 126955 27 + . . scaffold1149 GLEAN mRNA 126468 126659 0.531581 + . ID=CGI_10023452; scaffold1149 WUBlastX LTR_Ngaro 126468 126659 53 + . . scaffold1149 GLEAN mRNA 132281 132354 0.531581 + . ID=CGI_10023452; scaffold1149 TRF Tandem_Repeat 132281 132354 85 + . . scaffold1149 GLEAN mRNA 138389 138577 0.531581 + . ID=CGI_10023452; scaffold1149 WUBlastX DNA_TcMar-Marin 138389 138577 63 + . . scaffold1149 GLEAN mRNA 177280 177412 0.31262 + . ID=CGI_10023454; scaffold1149 TRF Tandem_Repeat 177280 177412 106 + . . scaffold1149 GLEAN mRNA 177280 177527 0.31262 + . ID=CGI_10023454; scaffold1149 TRF Tandem_Repeat 177280 177527 117 + . . scaffold1149 GLEAN mRNA 177436 177531 0.31262 + . ID=CGI_10023454; scaffold1149 TRF Tandem_Repeat 177436 177531 165 + . . scaffold1149 GLEAN mRNA 177436 177693 0.31262 + . ID=CGI_10023454; scaffold1149 TRF Tandem_Repeat 177436 177693 262 + . . scaffold1149 GLEAN mRNA 164943 165398 0.31262 + . ID=CGI_10023454; scaffold1149 WUBlastX LINE_RTE-X 164943 165398 83 + . . scaffold1149 GLEAN mRNA 164412 164639 0.31262 + . ID=CGI_10023454; scaffold1149 WUBlastX LINE_RTE-X 164412 164639 77 + . . scaffold1149 GLEAN mRNA 164650 164793 0.31262 + . ID=CGI_10023454; scaffold1149 WUBlastX LINE_RTE-X 164650 164793 40 + . . scaffold1149 GLEAN mRNA 177280 177412 0.499791 - . ID=CGI_10023457; scaffold1149 TRF Tandem_Repeat 177280 177412 106 + . . scaffold1149 GLEAN mRNA 177280 177527 0.499791 - . ID=CGI_10023457; scaffold1149 TRF Tandem_Repeat 177280 177527 117 + . . scaffold1149 GLEAN mRNA 177436 177531 0.499791 - . ID=CGI_10023457; scaffold1149 TRF Tandem_Repeat 177436 177531 165 + . . scaffold1149 GLEAN mRNA 177436 177693 0.499791 - . ID=CGI_10023457; scaffold1149 TRF Tandem_Repeat 177436 177693 262 + . . scaffold1149 GLEAN mRNA 218381 218659 0.999395 - . ID=CGI_10023460; scaffold1149 WUBlastX LINE_RTE-X 218381 218659 53 + . . scaffold1149 GLEAN mRNA 220052 220396 0.999395 - . ID=CGI_10023460; scaffold1149 WUBlastX DNA_hAT-Ac 220052 220396 48 + . . scaffold1149 GLEAN mRNA 218465 219424 0.999395 - . ID=CGI_10023460; scaffold1149 WUBlastX LINE_RTE-X 218465 219424 354 + . . scaffold1149 GLEAN mRNA 217415 218347 0.999395 - . ID=CGI_10023460; scaffold1149 WUBlastX LINE_RTE-X 217415 218347 352 - . . scaffold1149 GLEAN mRNA 219947 220219 0.999395 - . ID=CGI_10023460; scaffold1149 WUBlastX DNA_hAT-Ac 219947 220219 67 + . . scaffold1149 GLEAN mRNA 220073 220261 0.999395 - . ID=CGI_10023460; scaffold1149 WUBlastX DNA_hAT-Ac 220073 220261 72 + . . scaffold1149 GLEAN mRNA 231476 231510 0.507658 + . ID=CGI_10023462; scaffold1149 TRF Tandem_Repeat 231476 231510 70 + . . scaffold1149 GLEAN mRNA 252573 252602 0.507658 + . ID=CGI_10023462; scaffold1149 TRF Tandem_Repeat 252573 252602 53 + . . scaffold1149 GLEAN mRNA 254856 254937 0.507658 + . ID=CGI_10023462; scaffold1149 TRF Tandem_Repeat 254856 254937 164 + . . scaffold1149 GLEAN mRNA 255446 255476 0.507658 + . ID=CGI_10023462; scaffold1149 TRF Tandem_Repeat 255446 255476 55 + . . scaffold1149 GLEAN mRNA 256086 256130 0.507658 + . ID=CGI_10023462; scaffold1149 TRF Tandem_Repeat 256086 256130 90 + . . scaffold1149 GLEAN mRNA 262654 262727 0.507658 + . ID=CGI_10023462; scaffold1149 TRF Tandem_Repeat 262654 262727 148 + . . scaffold1149 GLEAN mRNA 274255 274292 1 - . ID=CGI_10023463; scaffold1149 TRF Tandem_Repeat 274255 274292 76 + . . scaffold1149 GLEAN mRNA 276725 277539 1 - . ID=CGI_10023463; scaffold1149 TRF Tandem_Repeat 276725 277539 1026 + . . scaffold1149 GLEAN mRNA 277709 277746 1 - . ID=CGI_10023463; scaffold1149 TRF Tandem_Repeat 277709 277746 51 + . . scaffold1149 GLEAN mRNA 278811 278922 1 - . ID=CGI_10023463; scaffold1149 TRF Tandem_Repeat 278811 278922 206 + . . scaffold1149 GLEAN mRNA 281539 281588 1 - . ID=CGI_10023463; scaffold1149 TRF Tandem_Repeat 281539 281588 66 + . . scaffold1149 GLEAN mRNA 281539 281588 1 - . ID=CGI_10023463; scaffold1149 TRF Tandem_Repeat 281539 281588 75 + . . scaffold1149 GLEAN mRNA 371472 371522 0.330357 - . ID=CGI_10023465; scaffold1149 TRF Tandem_Repeat 371472 371522 52 + . . scaffold1149 GLEAN mRNA 374596 374649 0.330357 - . ID=CGI_10023465; scaffold1149 TRF Tandem_Repeat 374596 374649 90 + . . scaffold1149 GLEAN mRNA 379385 379430 0.330357 - . ID=CGI_10023465; scaffold1149 TRF Tandem_Repeat 379385 379430 92 + . . scaffold1149 GLEAN mRNA 381502 381550 0.330357 - . ID=CGI_10023465; scaffold1149 TRF Tandem_Repeat 381502 381550 62 + . . scaffold1149 GLEAN mRNA 381550 381592 0.330357 - . ID=CGI_10023465; scaffold1149 TRF Tandem_Repeat 381550 381592 86 + . . scaffold1149 GLEAN mRNA 395813 395930 0.330357 - . ID=CGI_10023465; scaffold1149 TRF Tandem_Repeat 395813 395930 75 + . . scaffold1149 GLEAN mRNA 395864 395986 0.330357 - . ID=CGI_10023465; scaffold1149 TRF Tandem_Repeat 395864 395986 88 + . . scaffold1149 GLEAN mRNA 436163 436220 0.962679 - . ID=CGI_10023466; scaffold1149 TRF Tandem_Repeat 436163 436220 116 + . . scaffold1149 GLEAN mRNA 436600 436649 0.962679 - . ID=CGI_10023466; scaffold1149 TRF Tandem_Repeat 436600 436649 75 + . . scaffold1149 GLEAN mRNA 509573 509637 0.999675 - . ID=CGI_10023469; scaffold1149 TRF Tandem_Repeat 509573 509637 85 + . . scaffold1149 GLEAN mRNA 522867 524103 1 - . ID=CGI_10023470; scaffold1149 TRF Tandem_Repeat 522867 524103 1557 + . . scaffold1149 GLEAN mRNA 528369 528470 0.98826 - . ID=CGI_10023471; scaffold1149 TRF Tandem_Repeat 528369 528470 131 + . . scaffold1149 GLEAN mRNA 528353 528469 0.98826 - . ID=CGI_10023471; scaffold1149 TRF Tandem_Repeat 528353 528469 101 + . . scaffold1149 GLEAN mRNA 532427 532728 0.98826 - . ID=CGI_10023471; scaffold1149 TRF Tandem_Repeat 532427 532728 186 + . . scaffold1149 GLEAN mRNA 532412 532728 0.98826 - . ID=CGI_10023471; scaffold1149 TRF Tandem_Repeat 532412 532728 203 + . . scaffold1149 GLEAN mRNA 538377 538452 1 - . ID=CGI_10023472; scaffold1149 TRF Tandem_Repeat 538377 538554 76 + . . scaffold1149 GLEAN mRNA 538346 538452 1 - . ID=CGI_10023472; scaffold1149 TRF Tandem_Repeat 538346 538579 362 + . . scaffold1149 GLEAN mRNA 548196 548315 0.999675 - . ID=CGI_10023473; scaffold1149 WUBlastX DNA_Harbinger 548196 548333 47 - . . scaffold1149 GLEAN mRNA 636857 636886 0.552538 + . ID=CGI_10023476; scaffold1149 TRF Tandem_Repeat 636857 636886 51 + . . scaffold1149 GLEAN mRNA 707622 708818 0.605293 + . ID=CGI_10023478; scaffold1149 WUBlastX LINE_RTE-BovB 707622 708818 1036 - . . scaffold1258 GLEAN mRNA 9572 9612 0.958385 + . ID=CGI_10023480; scaffold1258 TRF Tandem_Repeat 9572 9612 82 + . . scaffold1258 GLEAN mRNA 12829 12866 0.958385 + . ID=CGI_10023480; scaffold1258 TRF Tandem_Repeat 12829 12866 76 + . . scaffold1258 GLEAN mRNA 76899 76926 0.999734 - . ID=CGI_10023484; scaffold1258 TRF Tandem_Repeat 76899 76926 56 + . . scaffold1258 GLEAN mRNA 86856 87334 0.999734 - . ID=CGI_10023484; scaffold1258 TRF Tandem_Repeat 86856 87334 374 + . . scaffold1258 GLEAN mRNA 87108 87466 0.999734 - . ID=CGI_10023484; scaffold1258 TRF Tandem_Repeat 87108 87466 384 + . . scaffold1258 GLEAN mRNA 81775 81998 0.999734 - . ID=CGI_10023484; scaffold1258 TRF Tandem_Repeat 81775 81998 182 + . . scaffold1258 GLEAN mRNA 122456 122819 1 - . ID=CGI_10023486; scaffold1258 TRF Tandem_Repeat 122456 122819 283 + . . scaffold1258 GLEAN mRNA 122476 122807 1 - . ID=CGI_10023486; scaffold1258 TRF Tandem_Repeat 122476 122807 213 + . . scaffold1258 GLEAN mRNA 123704 123869 1 - . ID=CGI_10023486; scaffold1258 TRF Tandem_Repeat 123704 123869 207 + . . scaffold1258 GLEAN mRNA 124592 124696 1 - . ID=CGI_10023486; scaffold1258 TRF Tandem_Repeat 124592 124696 147 + . . scaffold1258 GLEAN mRNA 129496 129548 1 - . ID=CGI_10023486; scaffold1258 TRF Tandem_Repeat 129496 129548 106 + . . scaffold1258 GLEAN mRNA 130419 130505 1 - . ID=CGI_10023486; scaffold1258 TRF Tandem_Repeat 130419 130505 84 + . . scaffold1258 GLEAN mRNA 134792 134841 0.774946 - . ID=CGI_10023487; scaffold1258 TRF Tandem_Repeat 134792 134841 100 + . . scaffold1258 GLEAN mRNA 136368 136595 0.774946 - . ID=CGI_10023487; scaffold1258 TRF Tandem_Repeat 136368 136595 375 + . . scaffold1258 GLEAN mRNA 195618 195619 0.999664 - . ID=CGI_10023488; scaffold1258 TRF Tandem_Repeat 195559 195619 122 + . . scaffold1258 GLEAN mRNA 230322 230400 0.991221 + . ID=CGI_10023492; scaffold1258 TRF Tandem_Repeat 230322 230400 63 + . . scaffold1258 GLEAN mRNA 230422 230508 0.991221 + . ID=CGI_10023492; scaffold1258 TRF Tandem_Repeat 230422 230508 59 + . . scaffold1258 GLEAN mRNA 230570 230646 0.991221 + . ID=CGI_10023492; scaffold1258 TRF Tandem_Repeat 230570 230646 57 + . . scaffold1258 GLEAN mRNA 235534 235564 0.991221 + . ID=CGI_10023492; scaffold1258 TRF Tandem_Repeat 235534 235564 53 + . . scaffold1258 GLEAN mRNA 237409 237587 0.991221 + . ID=CGI_10023492; scaffold1258 TRF Tandem_Repeat 237409 237587 224 + . . scaffold1258 GLEAN mRNA 252501 252991 0.606693 + . ID=CGI_10023493; scaffold1258 TRF Tandem_Repeat 252501 252991 662 + . . scaffold1258 GLEAN mRNA 253026 253406 0.606693 + . ID=CGI_10023493; scaffold1258 TRF Tandem_Repeat 253026 253406 470 + . . scaffold1258 GLEAN mRNA 253026 253406 0.606693 + . ID=CGI_10023493; scaffold1258 TRF Tandem_Repeat 253026 253406 473 + . . scaffold1258 GLEAN mRNA 257717 257830 0.606693 + . ID=CGI_10023493; scaffold1258 TRF Tandem_Repeat 257717 257830 129 + . . scaffold1258 GLEAN mRNA 266715 266971 0.606693 + . ID=CGI_10023493; scaffold1258 TRF Tandem_Repeat 266715 266971 205 + . . scaffold1258 GLEAN mRNA 280730 282733 0.651134 + . ID=CGI_10023494; scaffold1258 TRF Tandem_Repeat 280730 282733 3112 + . . scaffold1258 GLEAN mRNA 307922 307959 0.998492 + . ID=CGI_10023496; scaffold1258 TRF Tandem_Repeat 307922 307959 58 + . . scaffold1258 GLEAN mRNA 383533 383571 0.650923 - . ID=CGI_10023497; scaffold1258 TRF Tandem_Repeat 383533 383571 51 + . . scaffold1258 GLEAN mRNA 383535 383569 0.650923 - . ID=CGI_10023497; scaffold1258 TRF Tandem_Repeat 383535 383569 52 + . . scaffold1258 GLEAN mRNA 487723 487774 1 + . ID=CGI_10023500; scaffold1258 TRF Tandem_Repeat 487723 487774 104 + . . scaffold1258 GLEAN mRNA 541185 541222 0.391169 - . ID=CGI_10023505; scaffold1258 TRF Tandem_Repeat 541185 541222 76 + . . scaffold1258 GLEAN mRNA 541221 541245 0.391169 - . ID=CGI_10023505; scaffold1258 TRF Tandem_Repeat 541221 541245 50 + . . scaffold1258 GLEAN mRNA 541962 541994 0.391169 - . ID=CGI_10023505; scaffold1258 TRF Tandem_Repeat 541962 541994 66 + . . scaffold1258 GLEAN mRNA 650399 650547 0.92041 - . ID=CGI_10023509; scaffold1258 TRF Tandem_Repeat 650399 650547 57 + . . scaffold1258 GLEAN mRNA 651505 652249 0.92041 - . ID=CGI_10023509; scaffold1258 TRF Tandem_Repeat 651505 652249 953 + . . scaffold1258 GLEAN mRNA 651499 652341 0.92041 - . ID=CGI_10023509; scaffold1258 TRF Tandem_Repeat 651499 652341 708 + . . scaffold1258 GLEAN mRNA 658385 658492 0.92041 - . ID=CGI_10023509; scaffold1258 TRF Tandem_Repeat 658385 658492 189 + . . scaffold1258 GLEAN mRNA 722691 722991 1 + . ID=CGI_10023510; scaffold1258 TRF Tandem_Repeat 722691 722991 458 + . . scaffold1258 GLEAN mRNA 738066 738113 0.985984 - . ID=CGI_10023511; scaffold1258 TRF Tandem_Repeat 738066 738113 96 + . . scaffold1258 GLEAN mRNA 742328 742375 0.985984 - . ID=CGI_10023511; scaffold1258 TRF Tandem_Repeat 742328 742375 96 + . . scaffold1258 GLEAN mRNA 746800 746853 0.985984 - . ID=CGI_10023511; scaffold1258 TRF Tandem_Repeat 746800 746853 90 + . . scaffold1258 GLEAN mRNA 747198 747270 0.985984 - . ID=CGI_10023511; scaffold1258 TRF Tandem_Repeat 747198 747270 101 + . . scaffold1258 GLEAN mRNA 748175 748422 0.985984 - . ID=CGI_10023511; scaffold1258 TRF Tandem_Repeat 748175 748422 212 + . . scaffold1258 GLEAN mRNA 748186 748395 0.985984 - . ID=CGI_10023511; scaffold1258 TRF Tandem_Repeat 748186 748395 258 + . . scaffold1258 GLEAN mRNA 781638 781738 0.994737 - . ID=CGI_10023512; scaffold1258 TRF Tandem_Repeat 781638 781738 139 + . . scaffold1258 GLEAN mRNA 787688 787715 0.994737 - . ID=CGI_10023512; scaffold1258 TRF Tandem_Repeat 787688 787715 56 + . . scaffold1258 GLEAN mRNA 791217 791407 0.926741 - . ID=CGI_10023513; scaffold1258 TRF Tandem_Repeat 791217 791407 165 + . . scaffold1258 GLEAN mRNA 818230 818274 0.926741 - . ID=CGI_10023513; scaffold1258 TRF Tandem_Repeat 818230 818274 90 + . . scaffold383 GLEAN mRNA 6818 6873 0.331837 - . ID=CGI_10023515; scaffold383 TRF Tandem_Repeat 6818 6873 112 + . . scaffold383 GLEAN mRNA 12233 12281 0.331837 - . ID=CGI_10023515; scaffold383 TRF Tandem_Repeat 12233 12281 98 + . . scaffold383 GLEAN mRNA 18788 18845 0.331837 - . ID=CGI_10023515; scaffold383 TRF Tandem_Repeat 18788 18845 75 + . . scaffold383 GLEAN mRNA 19896 19942 0.331837 - . ID=CGI_10023515; scaffold383 TRF Tandem_Repeat 19896 19942 94 + . . scaffold383 GLEAN mRNA 20869 21171 0.331837 - . ID=CGI_10023515; scaffold383 TRF Tandem_Repeat 20869 21171 563 + . . scaffold383 GLEAN mRNA 84900 84967 0.999585 + . ID=CGI_10023517; scaffold383 TRF Tandem_Repeat 84900 84967 64 + . . scaffold383 GLEAN mRNA 84891 84966 0.999585 + . ID=CGI_10023517; scaffold383 TRF Tandem_Repeat 84891 84966 89 + . . scaffold383 GLEAN mRNA 84892 84967 0.999585 + . ID=CGI_10023517; scaffold383 TRF Tandem_Repeat 84892 84967 98 + . . scaffold383 GLEAN mRNA 94854 95201 0.999938 - . ID=CGI_10023518; scaffold383 TRF Tandem_Repeat 94854 95201 597 + . . scaffold383 GLEAN mRNA 131158 131199 0.999026 + . ID=CGI_10023521; scaffold383 TRF Tandem_Repeat 131158 131199 84 + . . scaffold383 GLEAN mRNA 132847 132878 0.999026 + . ID=CGI_10023521; scaffold383 TRF Tandem_Repeat 132847 132878 64 + . . scaffold383 GLEAN mRNA 160298 160346 0.999391 + . ID=CGI_10023522; scaffold383 TRF Tandem_Repeat 160298 160346 98 + . . scaffold383 GLEAN mRNA 177497 177559 0.990193 + . ID=CGI_10023524; scaffold383 TRF Tandem_Repeat 177497 177559 90 + . . scaffold383 GLEAN mRNA 181543 181613 0.990193 + . ID=CGI_10023524; scaffold383 TRF Tandem_Repeat 181543 181613 56 + . . scaffold383 GLEAN mRNA 182362 182409 0.990193 + . ID=CGI_10023524; scaffold383 TRF Tandem_Repeat 182362 182409 96 + . . scaffold383 GLEAN mRNA 180221 180324 0.990193 + . ID=CGI_10023524; scaffold383 TRF Tandem_Repeat 180221 180324 95 + . . scaffold383 GLEAN mRNA 180222 180326 0.990193 + . ID=CGI_10023524; scaffold383 TRF Tandem_Repeat 180222 180326 120 + . . scaffold383 GLEAN mRNA 296191 296246 0.994673 + . ID=CGI_10023533; scaffold383 TRF Tandem_Repeat 296191 296246 112 + . . scaffold383 GLEAN mRNA 297398 297443 0.994673 + . ID=CGI_10023533; scaffold383 TRF Tandem_Repeat 297398 297443 92 + . . scaffold383 GLEAN mRNA 308447 309223 0.994673 + . ID=CGI_10023533; scaffold383 TRF Tandem_Repeat 308447 309223 1072 + . . scaffold383 GLEAN mRNA 308444 309223 0.994673 + . ID=CGI_10023533; scaffold383 TRF Tandem_Repeat 308444 309223 1104 + . . scaffold383 GLEAN mRNA 321175 321863 1 + . ID=CGI_10023535; scaffold383 TRF Tandem_Repeat 321175 321863 1130 + . . scaffold383 GLEAN mRNA 381016 381059 0.995588 - . ID=CGI_10023538; scaffold383 TRF Tandem_Repeat 381016 381059 88 + . . scaffold383 GLEAN mRNA 511852 512040 0.999797 - . ID=CGI_10023546; scaffold383 TRF Tandem_Repeat 511852 512040 179 + . . scaffold383 GLEAN mRNA 558097 558158 0.499838 + . ID=CGI_10023547; scaffold383 TRF Tandem_Repeat 558097 558158 124 + . . scaffold383 GLEAN mRNA 570215 570287 0.790008 - . ID=CGI_10023548; scaffold383 TRF Tandem_Repeat 570215 570287 137 + . . scaffold383 GLEAN mRNA 575223 575291 0.790008 - . ID=CGI_10023548; scaffold383 TRF Tandem_Repeat 575223 575291 129 + . . scaffold383 GLEAN mRNA 641121 641192 0.42054 + . ID=CGI_10023550; scaffold383 TRF Tandem_Repeat 641121 641192 135 + . . scaffold383 GLEAN mRNA 641449 641519 0.42054 + . ID=CGI_10023550; scaffold383 TRF Tandem_Repeat 641449 641519 133 + . . scaffold383 GLEAN mRNA 701100 701136 0.479698 + . ID=CGI_10023552; scaffold383 TRF Tandem_Repeat 701100 701136 65 + . . scaffold383 GLEAN mRNA 720518 720566 0.479698 + . ID=CGI_10023552; scaffold383 TRF Tandem_Repeat 720518 720566 98 + . . scaffold383 GLEAN mRNA 724734 724776 0.479698 + . ID=CGI_10023552; scaffold383 TRF Tandem_Repeat 724734 724776 86 + . . scaffold383 GLEAN mRNA 728612 728687 0.479698 + . ID=CGI_10023552; scaffold383 TRF Tandem_Repeat 728612 728687 93 + . . scaffold383 GLEAN mRNA 742975 743841 1 + . ID=CGI_10023553; scaffold383 TRF Tandem_Repeat 742975 743841 1043 + . . scaffold383 GLEAN mRNA 756309 756455 1 + . ID=CGI_10023553; scaffold383 TRF Tandem_Repeat 756309 756455 68 + . . scaffold383 GLEAN mRNA 756450 756555 1 + . ID=CGI_10023553; scaffold383 TRF Tandem_Repeat 756450 756555 88 + . . scaffold383 GLEAN mRNA 756314 756555 1 + . ID=CGI_10023553; scaffold383 TRF Tandem_Repeat 756314 756555 177 + . . scaffold383 GLEAN mRNA 756321 756578 1 + . ID=CGI_10023553; scaffold383 TRF Tandem_Repeat 756321 756578 101 + . . scaffold383 GLEAN mRNA 756504 756578 1 + . ID=CGI_10023553; scaffold383 TRF Tandem_Repeat 756504 756578 66 + . . scaffold383 GLEAN mRNA 754683 755807 1 + . ID=CGI_10023553; scaffold383 WUBlastX DNA_Sola 754683 755807 254 + . . scaffold383 GLEAN mRNA 754251 755858 1 + . ID=CGI_10023553; scaffold383 WUBlastX DNA_Sola 754251 755858 232 + . . scaffold383 GLEAN mRNA 754623 756008 1 + . ID=CGI_10023553; scaffold383 WUBlastX DNA_Sola 754623 756008 247 + . . scaffold20 GLEAN mRNA 3972 4976 1 - . ID=CGI_10023555; scaffold20 WUBlastX DNA_TcMar-Fot1 3972 4976 160 - . . scaffold20 GLEAN mRNA 4972 5505 1 - . ID=CGI_10023555; scaffold20 WUBlastX DNA_TcMar-Fot1 4972 5505 144 - . . scaffold20 GLEAN mRNA 4296 4970 1 - . ID=CGI_10023555; scaffold20 WUBlastX DNA_TcMar-Fot1 4296 4970 197 - . . scaffold20 GLEAN mRNA 31413 31640 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX DNA_MuDR 31413 31640 73 + . . scaffold20 GLEAN mRNA 30214 30672 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX LINE_RTE-X 30214 30672 92 + . . scaffold20 GLEAN mRNA 31813 31908 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX DNA_MuDR 31813 31908 41 + . . scaffold20 GLEAN mRNA 30325 30666 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX LINE_RTE-X 30325 30666 169 + . . scaffold20 GLEAN mRNA 30118 30786 0.614933 - . ID=CGI_10023556; scaffold20 WUBlastX LINE_RTE-X 30118 30786 61 + . . scaffold20 GLEAN mRNA 31413 31640 0.880534 + . ID=CGI_10023557; scaffold20 WUBlastX DNA_MuDR 31413 31640 73 + . . scaffold20 GLEAN mRNA 30214 30672 0.880534 + . ID=CGI_10023557; scaffold20 WUBlastX LINE_RTE-X 30214 30672 92 + . . scaffold20 GLEAN mRNA 31813 31908 0.880534 + . ID=CGI_10023557; scaffold20 WUBlastX DNA_MuDR 31813 31908 41 + . . scaffold20 GLEAN mRNA 30325 30666 0.880534 + . ID=CGI_10023557; scaffold20 WUBlastX LINE_RTE-X 30325 30666 169 + . . scaffold20 GLEAN mRNA 30118 30786 0.880534 + . ID=CGI_10023557; scaffold20 WUBlastX LINE_RTE-X 30118 30786 61 + . . scaffold20 GLEAN mRNA 52043 52772 0.673996 - . ID=CGI_10023561; scaffold20 TRF Tandem_Repeat 52043 52772 796 + . . scaffold20 GLEAN mRNA 61394 62290 0.673996 - . ID=CGI_10023561; scaffold20 TRF Tandem_Repeat 61394 62290 1602 + . . scaffold20 GLEAN mRNA 81217 81255 0.673996 - . ID=CGI_10023561; scaffold20 WUBlastX DNA_Harbinger 81217 81447 82 - . . scaffold20 GLEAN mRNA 88626 89547 0.999992 + . ID=CGI_10023562; scaffold20 TRF Tandem_Repeat 88626 89547 1359 + . . scaffold20 GLEAN mRNA 89752 89789 0.999992 + . ID=CGI_10023562; scaffold20 TRF Tandem_Repeat 89752 89789 67 + . . scaffold20 GLEAN mRNA 85970 86059 0.999992 + . ID=CGI_10023562; scaffold20 WUBlastX DNA_TcMar-Pogo 85970 86059 30 - . . scaffold20 GLEAN mRNA 86062 86337 0.999992 + . ID=CGI_10023562; scaffold20 WUBlastX DNA_TcMar-Pogo 86062 86337 45 - . . scaffold20 GLEAN mRNA 111694 112784 0.183716 - . ID=CGI_10023563; scaffold20 TRF Tandem_Repeat 111694 112784 1540 + . . scaffold20 GLEAN mRNA 120572 120617 0.183716 - . ID=CGI_10023563; scaffold20 TRF Tandem_Repeat 120572 120617 51 + . . scaffold20 GLEAN mRNA 127532 127587 0.183716 - . ID=CGI_10023563; scaffold20 TRF Tandem_Repeat 127532 127587 112 + . . scaffold20 GLEAN mRNA 132992 133678 0.183716 - . ID=CGI_10023563; scaffold20 WUBlastX LINE_L2 132992 133678 236 + . . scaffold20 GLEAN mRNA 132898 132942 0.183716 - . ID=CGI_10023563; scaffold20 WUBlastX LINE_Rex-Babar 132898 132942 20 + . . scaffold20 GLEAN mRNA 132992 133678 0.240843 + . ID=CGI_10023564; scaffold20 WUBlastX LINE_L2 132992 133678 236 + . . scaffold20 GLEAN mRNA 132898 132942 0.240843 + . ID=CGI_10023564; scaffold20 WUBlastX LINE_Rex-Babar 132898 132942 20 + . . scaffold20 GLEAN mRNA 168373 168416 0.240843 + . ID=CGI_10023564; scaffold20 TRF Tandem_Repeat 168373 168416 88 + . . scaffold20 GLEAN mRNA 177862 177899 0.240843 + . ID=CGI_10023564; scaffold20 TRF Tandem_Repeat 177862 177899 76 + . . scaffold20 GLEAN mRNA 182326 182409 0.240843 + . ID=CGI_10023564; scaffold20 TRF Tandem_Repeat 182326 182409 64 + . . scaffold20 GLEAN mRNA 182326 182414 0.240843 + . ID=CGI_10023564; scaffold20 TRF Tandem_Repeat 182326 182414 81 + . . scaffold20 GLEAN mRNA 182326 182412 0.240843 + . ID=CGI_10023564; scaffold20 TRF Tandem_Repeat 182326 182412 63 + . . scaffold20 GLEAN mRNA 206630 206668 0.728523 + . ID=CGI_10023565; scaffold20 TRF Tandem_Repeat 206630 206668 78 + . . scaffold20 GLEAN mRNA 210972 211077 0.728523 + . ID=CGI_10023565; scaffold20 TRF Tandem_Repeat 210972 211077 83 + . . scaffold20 GLEAN mRNA 211482 212153 0.728523 + . ID=CGI_10023565; scaffold20 WUBlastX LINE_CR1 211482 212153 196 + . . scaffold20 GLEAN mRNA 248445 249134 0.937847 - . ID=CGI_10023567; scaffold20 TRF Tandem_Repeat 248445 249134 704 + . . scaffold20 GLEAN mRNA 252210 252328 1 + . ID=CGI_10023568; scaffold20 TRF Tandem_Repeat 252210 252328 184 + . . scaffold20 GLEAN mRNA 261222 261255 0.999351 - . ID=CGI_10023569; scaffold20 TRF Tandem_Repeat 261222 261255 59 + . . scaffold20 GLEAN mRNA 293572 293623 1 + . ID=CGI_10023571; scaffold20 TRF Tandem_Repeat 293572 293623 77 + . . scaffold20 GLEAN mRNA 305361 305406 0.999796 - . ID=CGI_10023572; scaffold20 TRF Tandem_Repeat 305361 305406 67 + . . scaffold20 GLEAN mRNA 305601 305921 0.999796 - . ID=CGI_10023572; scaffold20 TRF Tandem_Repeat 305601 305921 579 + . . scaffold20 GLEAN mRNA 388327 389034 0.980067 + . ID=CGI_10023580; scaffold20 TRF Tandem_Repeat 388327 389034 476 + . . scaffold20 GLEAN mRNA 388327 389034 0.980067 + . ID=CGI_10023580; scaffold20 TRF Tandem_Repeat 388327 389034 574 + . . scaffold20 GLEAN mRNA 388351 389034 0.980067 + . ID=CGI_10023580; scaffold20 TRF Tandem_Repeat 388351 389034 567 + . . scaffold20 GLEAN mRNA 394490 394676 0.980067 + . ID=CGI_10023580; scaffold20 TRF Tandem_Repeat 394490 394676 268 + . . scaffold20 GLEAN mRNA 394490 394707 0.980067 + . ID=CGI_10023580; scaffold20 TRF Tandem_Repeat 394490 394707 211 + . . scaffold20 GLEAN mRNA 402112 402377 1 + . ID=CGI_10023582; scaffold20 TRF Tandem_Repeat 402112 402377 532 + . . scaffold20 GLEAN mRNA 407858 407968 0.660674 - . ID=CGI_10023583; scaffold20 TRF Tandem_Repeat 407858 407968 78 + . . scaffold20 GLEAN mRNA 408425 408501 0.660674 - . ID=CGI_10023583; scaffold20 TRF Tandem_Repeat 408425 408501 109 + . . scaffold20 GLEAN mRNA 417763 417978 0.660674 - . ID=CGI_10023583; scaffold20 TRF Tandem_Repeat 417763 417978 279 + . . scaffold20 GLEAN mRNA 418556 418601 0.660674 - . ID=CGI_10023583; scaffold20 TRF Tandem_Repeat 418556 418601 57 + . . scaffold20 GLEAN mRNA 418557 418598 0.660674 - . ID=CGI_10023583; scaffold20 TRF Tandem_Repeat 418557 418598 50 + . . scaffold20 GLEAN mRNA 419820 421069 0.660674 - . ID=CGI_10023583; scaffold20 TRF Tandem_Repeat 419820 421069 1785 + . . scaffold20 GLEAN mRNA 407858 407968 0.386504 + . ID=CGI_10023584; scaffold20 TRF Tandem_Repeat 407858 407968 78 + . . scaffold20 GLEAN mRNA 408425 408501 0.386504 + . ID=CGI_10023584; scaffold20 TRF Tandem_Repeat 408425 408501 109 + . . scaffold20 GLEAN mRNA 417763 417978 0.386504 + . ID=CGI_10023584; scaffold20 TRF Tandem_Repeat 417763 417978 279 + . . scaffold20 GLEAN mRNA 418556 418601 0.386504 + . ID=CGI_10023584; scaffold20 TRF Tandem_Repeat 418556 418601 57 + . . scaffold20 GLEAN mRNA 418557 418598 0.386504 + . ID=CGI_10023584; scaffold20 TRF Tandem_Repeat 418557 418598 50 + . . scaffold20 GLEAN mRNA 419820 421069 0.386504 + . ID=CGI_10023584; scaffold20 TRF Tandem_Repeat 419820 421069 1785 + . . scaffold20 GLEAN mRNA 606406 606463 0.647149 + . ID=CGI_10023592; scaffold20 TRF Tandem_Repeat 606406 606463 116 + . . scaffold20 GLEAN mRNA 607887 607930 0.647149 + . ID=CGI_10023592; scaffold20 TRF Tandem_Repeat 607887 607930 88 + . . scaffold20 GLEAN mRNA 617786 617820 0.647149 + . ID=CGI_10023592; scaffold20 TRF Tandem_Repeat 617786 617820 70 + . . scaffold20 GLEAN mRNA 621620 621663 0.647149 + . ID=CGI_10023592; scaffold20 TRF Tandem_Repeat 621620 621663 88 + . . scaffold20 GLEAN mRNA 635589 635661 1 - . ID=CGI_10023593; scaffold20 TRF Tandem_Repeat 635589 635661 146 + . . scaffold20 GLEAN mRNA 731759 731773 0.999372 - . ID=CGI_10023595; scaffold20 WUBlastX LTR_Ngaro 731759 731854 24 - . . scaffold20 GLEAN mRNA 752667 753041 1 - . ID=CGI_10023596; scaffold20 WUBlastX LTR_Gypsy 752667 753494 84 - . . scaffold20 GLEAN mRNA 752466 753041 1 - . ID=CGI_10023596; scaffold20 WUBlastX LTR_Gypsy 752466 753179 150 - . . scaffold20 GLEAN mRNA 752574 753041 1 - . ID=CGI_10023596; scaffold20 WUBlastX LTR_Gypsy 752574 753161 195 - . . scaffold20 GLEAN mRNA 756872 756929 0.738574 - . ID=CGI_10023597; scaffold20 WUBlastX DNA_Harbinger 756732 756929 28 + . . scaffold20 GLEAN mRNA 839908 839938 0.994281 - . ID=CGI_10023600; scaffold20 TRF Tandem_Repeat 839908 839938 62 + . . scaffold20 GLEAN mRNA 841861 842868 0.994281 - . ID=CGI_10023600; scaffold20 TRF Tandem_Repeat 841861 842868 1483 + . . scaffold20 GLEAN mRNA 853990 854202 1 - . ID=CGI_10023601; scaffold20 TRF Tandem_Repeat 853990 854202 390 + . . scaffold583 GLEAN mRNA 30126 30150 0.538908 + . ID=CGI_10023603; scaffold583 TRF Tandem_Repeat 30126 30150 50 + . . scaffold583 GLEAN mRNA 28713 29648 0.538908 + . ID=CGI_10023603; scaffold583 WUBlastX LINE_L1-Tx1 28713 29648 275 - . . scaffold583 GLEAN mRNA 30245 30553 0.538908 + . ID=CGI_10023603; scaffold583 WUBlastX LTR_Gypsy 30245 30553 129 + . . scaffold583 GLEAN mRNA 30151 30693 0.538908 + . ID=CGI_10023603; scaffold583 WUBlastX LTR_Gypsy 30151 30693 103 + . . scaffold583 GLEAN mRNA 30194 30496 0.538908 + . ID=CGI_10023603; scaffold583 WUBlastX LTR_Gypsy 30194 30496 207 + . . scaffold583 GLEAN mRNA 86063 86109 0.544852 + . ID=CGI_10023604; scaffold583 TRF Tandem_Repeat 86063 86109 94 + . . scaffold583 GLEAN mRNA 137574 137602 0.920355 - . ID=CGI_10023607; scaffold583 TRF Tandem_Repeat 137574 137602 58 + . . scaffold583 GLEAN mRNA 139840 139917 0.920355 - . ID=CGI_10023607; scaffold583 TRF Tandem_Repeat 139840 139917 156 + . . scaffold583 GLEAN mRNA 141551 141607 0.920355 - . ID=CGI_10023607; scaffold583 TRF Tandem_Repeat 141551 141607 62 + . . scaffold583 GLEAN mRNA 150052 150091 0.987433 - . ID=CGI_10023608; scaffold583 TRF Tandem_Repeat 150052 150091 80 + . . scaffold583 GLEAN mRNA 161299 161352 0.429311 - . ID=CGI_10023609; scaffold583 TRF Tandem_Repeat 161299 161352 108 + . . scaffold583 GLEAN mRNA 165274 165310 0.429311 - . ID=CGI_10023609; scaffold583 TRF Tandem_Repeat 165274 165310 51 + . . scaffold583 GLEAN mRNA 165278 165311 0.429311 - . ID=CGI_10023609; scaffold583 TRF Tandem_Repeat 165278 165311 54 + . . scaffold583 GLEAN mRNA 171022 171072 0.429311 - . ID=CGI_10023609; scaffold583 TRF Tandem_Repeat 171022 171072 102 + . . scaffold583 GLEAN mRNA 193166 193209 1 + . ID=CGI_10023610; scaffold583 TRF Tandem_Repeat 193166 193209 88 + . . scaffold583 GLEAN mRNA 202402 202451 0.593389 - . ID=CGI_10023611; scaffold583 TRF Tandem_Repeat 202402 202451 57 + . . scaffold583 GLEAN mRNA 213332 214316 0.992139 + . ID=CGI_10023612; scaffold583 TRF Tandem_Repeat 213332 214316 1551 + . . scaffold583 GLEAN mRNA 218031 218154 0.992139 + . ID=CGI_10023612; scaffold583 TRF Tandem_Repeat 218031 218154 176 + . . scaffold583 GLEAN mRNA 249244 249361 0.99076 + . ID=CGI_10023613; scaffold583 TRF Tandem_Repeat 249244 249361 59 + . . scaffold583 GLEAN mRNA 249224 249430 0.99076 + . ID=CGI_10023613; scaffold583 TRF Tandem_Repeat 249224 249430 79 + . . scaffold583 GLEAN mRNA 249229 249435 0.99076 + . ID=CGI_10023613; scaffold583 TRF Tandem_Repeat 249229 249435 369 + . . scaffold583 GLEAN mRNA 249325 249435 0.99076 + . ID=CGI_10023613; scaffold583 TRF Tandem_Repeat 249325 249435 57 + . . scaffold583 GLEAN mRNA 246097 248010 0.99076 + . ID=CGI_10023613; scaffold583 WUBlastX DNA_En-Spm 246097 248010 1217 + . . scaffold583 GLEAN mRNA 263929 264210 0.540216 - . ID=CGI_10023614; scaffold583 WUBlastX DNA_MuDR 263794 264210 59 - . . scaffold583 GLEAN mRNA 266364 266834 0.53608 - . ID=CGI_10023615; scaffold583 WUBlastX LTR_Gypsy 266364 266852 42 - . . scaffold583 GLEAN mRNA 266361 266834 0.53608 - . ID=CGI_10023615; scaffold583 WUBlastX LTR_Gypsy 266331 266954 26 - . . scaffold583 GLEAN mRNA 279966 280883 0.998382 + . ID=CGI_10023617; scaffold583 WUBlastX LTR_DIRS 279627 280883 233 + . . scaffold583 GLEAN mRNA 279966 280775 0.998382 + . ID=CGI_10023617; scaffold583 WUBlastX LTR_DIRS 279105 280775 184 + . . scaffold583 GLEAN mRNA 316908 316958 1 - . ID=CGI_10023620; scaffold583 TRF Tandem_Repeat 316908 316958 102 + . . scaffold583 GLEAN mRNA 373139 373183 0.692695 - . ID=CGI_10023621; scaffold583 TRF Tandem_Repeat 373139 373183 90 + . . scaffold583 GLEAN mRNA 374997 375038 0.692695 - . ID=CGI_10023621; scaffold583 TRF Tandem_Repeat 374997 375038 57 + . . scaffold583 GLEAN mRNA 377149 377391 0.692695 - . ID=CGI_10023621; scaffold583 TRF Tandem_Repeat 377149 377391 129 + . . scaffold583 GLEAN mRNA 379915 379946 0.692695 - . ID=CGI_10023621; scaffold583 TRF Tandem_Repeat 379915 379946 64 + . . scaffold583 GLEAN mRNA 380322 380367 0.692695 - . ID=CGI_10023621; scaffold583 TRF Tandem_Repeat 380322 380367 92 + . . scaffold583 GLEAN mRNA 388460 388600 0.692695 - . ID=CGI_10023621; scaffold583 WUBlastX LINE_CR1-L2 388460 388600 46 - . . scaffold583 GLEAN mRNA 388212 388433 0.692695 - . ID=CGI_10023621; scaffold583 WUBlastX LINE_CR1-L2 388212 388433 23 - . . scaffold583 GLEAN mRNA 388016 388180 0.692695 - . ID=CGI_10023621; scaffold583 WUBlastX LINE_CR1-L2 388016 388180 59 - . . scaffold583 GLEAN mRNA 388197 388331 0.692695 - . ID=CGI_10023621; scaffold583 WUBlastX LINE_CR1-L2 388197 388331 32 - . . scaffold583 GLEAN mRNA 376712 376951 0.692695 - . ID=CGI_10023621; scaffold583 TRF Tandem_Repeat 376712 376951 178 + . . scaffold583 GLEAN mRNA 376726 377393 0.692695 - . ID=CGI_10023621; scaffold583 TRF Tandem_Repeat 376726 377393 452 + . . scaffold583 GLEAN mRNA 416219 416840 0.995957 - . ID=CGI_10023625; scaffold583 TRF Tandem_Repeat 416219 416840 958 + . . scaffold583 GLEAN mRNA 421855 421899 0.995957 - . ID=CGI_10023625; scaffold583 TRF Tandem_Repeat 421855 421899 67 + . . scaffold583 GLEAN mRNA 426998 427089 0.995957 - . ID=CGI_10023625; scaffold583 TRF Tandem_Repeat 426998 427089 116 + . . scaffold583 GLEAN mRNA 435080 435859 0.995957 - . ID=CGI_10023625; scaffold583 TRF Tandem_Repeat 435080 435859 654 + . . scaffold583 GLEAN mRNA 437587 441390 0.995957 - . ID=CGI_10023625; scaffold583 WUBlastX LINE_L1-Tx1 437587 441390 1955 - . . scaffold583 GLEAN mRNA 444366 444405 0.995957 - . ID=CGI_10023625; scaffold583 TRF Tandem_Repeat 444366 444405 80 + . . scaffold583 GLEAN mRNA 441936 442538 0.995957 - . ID=CGI_10023625; scaffold583 WUBlastX LINE_L1 441936 442538 45 - . . scaffold583 GLEAN mRNA 441747 442409 0.995957 - . ID=CGI_10023625; scaffold583 WUBlastX LINE_L2 441747 442409 123 - . . scaffold583 GLEAN mRNA 473798 474034 0.559717 + . ID=CGI_10023626; scaffold583 WUBlastX DNA_Sola 473798 474034 88 - . . scaffold583 GLEAN mRNA 482688 482839 0.559717 + . ID=CGI_10023626; scaffold583 TRF Tandem_Repeat 482688 482839 209 + . . scaffold583 GLEAN mRNA 483515 483605 0.559717 + . ID=CGI_10023626; scaffold583 TRF Tandem_Repeat 483515 483605 146 + . . scaffold583 GLEAN mRNA 483571 483660 0.559717 + . ID=CGI_10023626; scaffold583 TRF Tandem_Repeat 483571 483660 99 + . . scaffold583 GLEAN mRNA 485135 485241 0.559717 + . ID=CGI_10023626; scaffold583 TRF Tandem_Repeat 485135 485241 142 + . . scaffold583 GLEAN mRNA 492565 492600 0.559717 + . ID=CGI_10023626; scaffold583 TRF Tandem_Repeat 492565 492600 56 + . . scaffold583 GLEAN mRNA 541203 541237 0.996078 + . ID=CGI_10023629; scaffold583 TRF Tandem_Repeat 541203 541237 61 + . . scaffold583 GLEAN mRNA 570770 570801 0.42639 + . ID=CGI_10023631; scaffold583 TRF Tandem_Repeat 570770 570801 57 + . . scaffold583 GLEAN mRNA 572565 572620 0.42639 + . ID=CGI_10023631; scaffold583 TRF Tandem_Repeat 572565 572620 103 + . . scaffold583 GLEAN mRNA 592539 592619 0.557605 - . ID=CGI_10023632; scaffold583 TRF Tandem_Repeat 592539 592619 155 + . . scaffold583 GLEAN mRNA 594616 594657 0.557605 - . ID=CGI_10023632; scaffold583 TRF Tandem_Repeat 594616 594657 84 + . . scaffold583 GLEAN mRNA 652012 652047 0.937847 - . ID=CGI_10023637; scaffold583 TRF Tandem_Repeat 652012 652047 72 + . . scaffold583 GLEAN mRNA 701208 701479 0.989593 + . ID=CGI_10023639; scaffold583 TRF Tandem_Repeat 701208 701479 348 + . . scaffold583 GLEAN mRNA 734363 734704 1 + . ID=CGI_10023642; scaffold583 WUBlastX LINE_L2 734363 734704 71 - . . scaffold583 GLEAN mRNA 745405 746562 0.999674 - . ID=CGI_10023643; scaffold583 WUBlastX LINE_CR1 745405 746562 216 - . . scaffold583 GLEAN mRNA 746558 747331 0.999674 - . ID=CGI_10023643; scaffold583 WUBlastX LINE_CR1 746558 747331 234 - . . scaffold583 GLEAN mRNA 746077 747150 0.999674 - . ID=CGI_10023643; scaffold583 WUBlastX LINE_CR1 746077 747150 319 - . . scaffold583 GLEAN mRNA 746077 746562 0.999674 - . ID=CGI_10023643; scaffold583 WUBlastX LINE_CR1 746077 746562 368 - . . scaffold583 GLEAN mRNA 745405 746562 0.5 + . ID=CGI_10023644; scaffold583 WUBlastX LINE_CR1 745405 746562 216 - . . scaffold583 GLEAN mRNA 746558 747331 0.5 + . ID=CGI_10023644; scaffold583 WUBlastX LINE_CR1 746558 747331 234 - . . scaffold583 GLEAN mRNA 746077 747150 0.5 + . ID=CGI_10023644; scaffold583 WUBlastX LINE_CR1 746077 747150 319 - . . scaffold583 GLEAN mRNA 746077 746562 0.5 + . ID=CGI_10023644; scaffold583 WUBlastX LINE_CR1 746077 746562 368 - . . scaffold583 GLEAN mRNA 758167 759068 0.693691 - . ID=CGI_10023645; scaffold583 TRF Tandem_Repeat 758167 759068 1197 + . . scaffold583 GLEAN mRNA 797927 797960 0.999012 + . ID=CGI_10023648; scaffold583 TRF Tandem_Repeat 797927 797960 68 + . . scaffold583 GLEAN mRNA 812088 813222 1 - . ID=CGI_10023649; scaffold583 TRF Tandem_Repeat 812088 813222 1512 + . . scaffold583 GLEAN mRNA 831793 831846 0.660675 + . ID=CGI_10023650; scaffold583 TRF Tandem_Repeat 831793 831846 94 + . . scaffold583 GLEAN mRNA 857571 857609 0.999676 - . ID=CGI_10023651; scaffold583 TRF Tandem_Repeat 857571 857609 78 + . . scaffold583 GLEAN mRNA 858124 858162 0.999676 - . ID=CGI_10023651; scaffold583 TRF Tandem_Repeat 858124 858162 78 + . . scaffold54 GLEAN mRNA 81217 81615 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy 81217 81615 137 + . . scaffold54 GLEAN mRNA 80470 80832 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy 80470 80832 65 + . . scaffold54 GLEAN mRNA 80614 80853 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy 80614 80853 79 + . . scaffold54 GLEAN mRNA 79935 80495 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy 79935 80495 54 + . . scaffold54 GLEAN mRNA 80867 81151 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy 80867 81151 48 + . . scaffold54 GLEAN mRNA 80695 80889 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy 80695 80889 61 + . . scaffold54 GLEAN mRNA 81199 81288 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy 81199 81288 31 + . . scaffold54 GLEAN mRNA 79803 80291 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy-Cigr 79803 80291 151 + . . scaffold54 GLEAN mRNA 79644 79787 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy 79644 79787 20 + . . scaffold54 GLEAN mRNA 83353 83544 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_ERV1 83353 83544 46 + . . scaffold54 GLEAN mRNA 83356 83460 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy 83356 83460 89 + . . scaffold54 GLEAN mRNA 83087 83428 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy-Cigr 83087 83428 115 + . . scaffold54 GLEAN mRNA 83135 83347 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy-Cigr 83135 83347 136 + . . scaffold54 GLEAN mRNA 83356 83499 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy 83356 83499 71 + . . scaffold54 GLEAN mRNA 81609 83135 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy 81609 83135 946 + . . scaffold54 GLEAN mRNA 89700 90101 1 + . ID=CGI_10023655; scaffold54 WUBlastX LINE_L1-Tx1 89700 90101 32 + . . scaffold54 GLEAN mRNA 89706 89984 1 + . ID=CGI_10023655; scaffold54 WUBlastX LINE_L1-Tx1 89706 89984 38 + . . scaffold54 GLEAN mRNA 101605 101689 0.913971 - . ID=CGI_10023656; scaffold54 TRF Tandem_Repeat 101605 101689 170 + . . scaffold54 GLEAN mRNA 105358 105405 0.913971 - . ID=CGI_10023656; scaffold54 TRF Tandem_Repeat 105358 105405 51 + . . scaffold54 GLEAN mRNA 105358 105405 0.913971 - . ID=CGI_10023656; scaffold54 TRF Tandem_Repeat 105358 105405 59 + . . scaffold54 GLEAN mRNA 120255 120294 1 + . ID=CGI_10023657; scaffold54 TRF Tandem_Repeat 120255 120294 80 + . . scaffold54 GLEAN mRNA 125931 125986 0.957404 - . ID=CGI_10023658; scaffold54 TRF Tandem_Repeat 125931 125986 112 + . . scaffold54 GLEAN mRNA 126756 126802 0.957404 - . ID=CGI_10023658; scaffold54 TRF Tandem_Repeat 126756 126802 94 + . . scaffold54 GLEAN mRNA 138062 138131 0.957404 - . ID=CGI_10023658; scaffold54 TRF Tandem_Repeat 138062 138131 140 + . . scaffold54 GLEAN mRNA 153658 153691 0.996557 + . ID=CGI_10023660; scaffold54 TRF Tandem_Repeat 153658 153691 68 + . . scaffold54 GLEAN mRNA 173159 173237 0.993109 - . ID=CGI_10023661; scaffold54 TRF Tandem_Repeat 173159 173237 113 + . . scaffold54 GLEAN mRNA 209258 209327 0.995373 + . ID=CGI_10023665; scaffold54 TRF Tandem_Repeat 209258 209327 131 + . . scaffold54 GLEAN mRNA 212425 212483 0.995373 + . ID=CGI_10023665; scaffold54 TRF Tandem_Repeat 212425 212483 118 + . . scaffold54 GLEAN mRNA 226655 227008 0.994488 + . ID=CGI_10023667; scaffold54 TRF Tandem_Repeat 226655 227008 528 + . . scaffold54 GLEAN mRNA 227634 227893 0.994488 + . ID=CGI_10023667; scaffold54 TRF Tandem_Repeat 227634 227893 263 + . . scaffold54 GLEAN mRNA 227623 227901 0.994488 + . ID=CGI_10023667; scaffold54 TRF Tandem_Repeat 227623 227901 234 + . . scaffold54 GLEAN mRNA 306009 306093 0.999675 + . ID=CGI_10023674; scaffold54 TRF Tandem_Repeat 306009 306093 170 + . . scaffold54 GLEAN mRNA 370476 370509 0.999414 - . ID=CGI_10023676; scaffold54 TRF Tandem_Repeat 370476 370509 50 + . . scaffold54 GLEAN mRNA 371005 372145 0.999414 - . ID=CGI_10023676; scaffold54 TRF Tandem_Repeat 371005 372145 2066 + . . scaffold54 GLEAN mRNA 372154 372245 0.999414 - . ID=CGI_10023676; scaffold54 TRF Tandem_Repeat 372154 372245 112 + . . scaffold54 GLEAN mRNA 372159 372244 0.999414 - . ID=CGI_10023676; scaffold54 TRF Tandem_Repeat 372159 372244 145 + . . scaffold54 GLEAN mRNA 381434 381460 0.999414 - . ID=CGI_10023676; scaffold54 TRF Tandem_Repeat 381434 381460 54 + . . scaffold54 GLEAN mRNA 391294 391345 0.999993 + . ID=CGI_10023677; scaffold54 TRF Tandem_Repeat 391294 391345 59 + . . scaffold54 GLEAN mRNA 391294 391354 0.999993 + . ID=CGI_10023677; scaffold54 TRF Tandem_Repeat 391294 391354 68 + . . scaffold54 GLEAN mRNA 393669 394076 0.999993 + . ID=CGI_10023677; scaffold54 TRF Tandem_Repeat 393669 394076 627 + . . scaffold54 GLEAN mRNA 393669 394427 0.999993 + . ID=CGI_10023677; scaffold54 TRF Tandem_Repeat 393669 394427 970 + . . scaffold54 GLEAN mRNA 393669 394375 0.999993 + . ID=CGI_10023677; scaffold54 TRF Tandem_Repeat 393669 394375 767 + . . scaffold54 GLEAN mRNA 394094 394427 0.999993 + . ID=CGI_10023677; scaffold54 TRF Tandem_Repeat 394094 394427 402 + . . scaffold54 GLEAN mRNA 394094 394427 0.999993 + . ID=CGI_10023677; scaffold54 TRF Tandem_Repeat 394094 394427 398 + . . scaffold54 GLEAN mRNA 400700 400736 0.999993 + . ID=CGI_10023677; scaffold54 TRF Tandem_Repeat 400700 400736 74 + . . scaffold54 GLEAN mRNA 426659 426832 0.998633 - . ID=CGI_10023678; scaffold54 TRF Tandem_Repeat 426659 426832 181 + . . scaffold54 GLEAN mRNA 446402 446435 0.999785 + . ID=CGI_10023682; scaffold54 TRF Tandem_Repeat 446402 446435 68 + . . scaffold54 GLEAN mRNA 450341 450448 0.999785 + . ID=CGI_10023682; scaffold54 TRF Tandem_Repeat 450341 450448 94 + . . scaffold54 GLEAN mRNA 450513 450853 0.999785 + . ID=CGI_10023682; scaffold54 TRF Tandem_Repeat 450513 450853 486 + . . scaffold54 GLEAN mRNA 450517 450852 0.999785 + . ID=CGI_10023682; scaffold54 TRF Tandem_Repeat 450517 450852 505 + . . scaffold54 GLEAN mRNA 450341 450448 0.999676 - . ID=CGI_10023683; scaffold54 TRF Tandem_Repeat 450341 450448 94 + . . scaffold54 GLEAN mRNA 450513 450853 0.999676 - . ID=CGI_10023683; scaffold54 TRF Tandem_Repeat 450513 450853 486 + . . scaffold54 GLEAN mRNA 450517 450852 0.999676 - . ID=CGI_10023683; scaffold54 TRF Tandem_Repeat 450517 450852 505 + . . scaffold54 GLEAN mRNA 471084 471386 0.373502 - . ID=CGI_10023684; scaffold54 TRF Tandem_Repeat 471084 471386 457 + . . scaffold54 GLEAN mRNA 490026 490077 0.373502 - . ID=CGI_10023684; scaffold54 TRF Tandem_Repeat 490026 490077 88 + . . scaffold54 GLEAN mRNA 491725 492128 0.373502 - . ID=CGI_10023684; scaffold54 TRF Tandem_Repeat 491725 492128 375 + . . scaffold54 GLEAN mRNA 653580 653625 0.813462 + . ID=CGI_10023687; scaffold54 TRF Tandem_Repeat 653580 653625 92 + . . scaffold54 GLEAN mRNA 653643 653674 0.813462 + . ID=CGI_10023687; scaffold54 TRF Tandem_Repeat 653643 653674 57 + . . scaffold54 GLEAN mRNA 655665 655698 0.813462 + . ID=CGI_10023687; scaffold54 TRF Tandem_Repeat 655665 655698 50 + . . scaffold54 GLEAN mRNA 658653 658678 0.813462 + . ID=CGI_10023687; scaffold54 TRF Tandem_Repeat 658653 658678 52 + . . scaffold54 GLEAN mRNA 662008 662144 0.813462 + . ID=CGI_10023687; scaffold54 TRF Tandem_Repeat 662008 662144 197 + . . scaffold54 GLEAN mRNA 666519 666551 0.174144 + . ID=CGI_10023688; scaffold54 TRF Tandem_Repeat 666519 666551 66 + . . scaffold54 GLEAN mRNA 666067 666513 0.174144 + . ID=CGI_10023688; scaffold54 WUBlastX DNA_Crypton 666067 666513 43 + . . scaffold54 GLEAN mRNA 668716 668856 0.174144 + . ID=CGI_10023688; scaffold54 WUBlastX DNA_Sola 668716 668856 33 + . . scaffold54 GLEAN mRNA 669714 669866 0.174144 + . ID=CGI_10023688; scaffold54 WUBlastX DNA_Sola 669714 669866 35 + . . scaffold54 GLEAN mRNA 670780 671223 0.174144 + . ID=CGI_10023688; scaffold54 WUBlastX DNA_Sola 670780 671223 115 + . . scaffold54 GLEAN mRNA 699439 699487 0.651135 + . ID=CGI_10023690; scaffold54 TRF Tandem_Repeat 699439 699487 98 + . . scaffold54 GLEAN mRNA 699498 699818 0.651135 + . ID=CGI_10023690; scaffold54 WUBlastX LINE_RTE-X 699498 699818 79 - . . scaffold54 GLEAN mRNA 704727 704770 0.965492 + . ID=CGI_10023691; scaffold54 TRF Tandem_Repeat 704727 704770 61 + . . scaffold54 GLEAN mRNA 706576 706629 0.965492 + . ID=CGI_10023691; scaffold54 TRF Tandem_Repeat 706576 706629 55 + . . scaffold54 GLEAN mRNA 706577 706618 0.965492 + . ID=CGI_10023691; scaffold54 TRF Tandem_Repeat 706577 706618 50 + . . scaffold54 GLEAN mRNA 713549 713579 0.965492 + . ID=CGI_10023691; scaffold54 TRF Tandem_Repeat 713549 713579 62 + . . scaffold54 GLEAN mRNA 714947 715018 0.965492 + . ID=CGI_10023691; scaffold54 TRF Tandem_Repeat 714947 715018 135 + . . scaffold54 GLEAN mRNA 731933 731987 0.999571 + . ID=CGI_10023692; scaffold54 TRF Tandem_Repeat 731933 731987 96 + . . scaffold54 GLEAN mRNA 740383 740430 0.999571 + . ID=CGI_10023692; scaffold54 TRF Tandem_Repeat 740383 740430 60 + . . scaffold54 GLEAN mRNA 740872 740937 0.999571 + . ID=CGI_10023692; scaffold54 TRF Tandem_Repeat 740872 740937 132 + . . scaffold54 GLEAN mRNA 741203 741247 0.999571 + . ID=CGI_10023692; scaffold54 TRF Tandem_Repeat 741203 741247 81 + . . scaffold54 GLEAN mRNA 751059 751104 1 + . ID=CGI_10023693; scaffold54 TRF Tandem_Repeat 751059 751104 56 + . . scaffold54 GLEAN mRNA 751064 751177 1 + . ID=CGI_10023693; scaffold54 TRF Tandem_Repeat 751064 751177 112 + . . scaffold54 GLEAN mRNA 751064 751189 1 + . ID=CGI_10023693; scaffold54 TRF Tandem_Repeat 751064 751189 108 + . . scaffold54 GLEAN mRNA 751081 751189 1 + . ID=CGI_10023693; scaffold54 TRF Tandem_Repeat 751081 751189 120 + . . scaffold54 GLEAN mRNA 751902 751977 1 + . ID=CGI_10023693; scaffold54 TRF Tandem_Repeat 751902 751977 143 + . . scaffold54 GLEAN mRNA 752407 752449 1 + . ID=CGI_10023693; scaffold54 TRF Tandem_Repeat 752407 752449 86 + . . scaffold54 GLEAN mRNA 763703 763741 0.841033 + . ID=CGI_10023695; scaffold54 TRF Tandem_Repeat 763703 763741 78 + . . scaffold54 GLEAN mRNA 765152 765190 0.841033 + . ID=CGI_10023695; scaffold54 TRF Tandem_Repeat 765152 765190 78 + . . scaffold54 GLEAN mRNA 765809 765855 0.841033 + . ID=CGI_10023695; scaffold54 TRF Tandem_Repeat 765809 765855 58 + . . scaffold54 GLEAN mRNA 765817 765855 0.841033 + . ID=CGI_10023695; scaffold54 TRF Tandem_Repeat 765817 765855 55 + . . scaffold54 GLEAN mRNA 770959 771008 0.841033 + . ID=CGI_10023695; scaffold54 TRF Tandem_Repeat 770959 771008 100 + . . scaffold54 GLEAN mRNA 779620 780155 0.987135 + . ID=CGI_10023696; scaffold54 TRF Tandem_Repeat 779620 780155 910 + . . scaffold54 GLEAN mRNA 780652 780690 0.987135 + . ID=CGI_10023696; scaffold54 TRF Tandem_Repeat 780652 780690 51 + . . scaffold54 GLEAN mRNA 778926 779090 0.987135 + . ID=CGI_10023696; scaffold54 WUBlastX DNA_Harbinger 778926 779090 57 + . . scaffold192 GLEAN mRNA 24567 24782 0.999536 - . ID=CGI_10023697; scaffold192 WUBlastX DNA_Sola 24567 24782 52 - . . scaffold192 GLEAN mRNA 23550 24386 0.999536 - . ID=CGI_10023697; scaffold192 WUBlastX DNA_Sola 23340 24386 348 - . . scaffold192 GLEAN mRNA 24537 24746 0.999536 - . ID=CGI_10023697; scaffold192 WUBlastX DNA_Sola 24537 24746 73 - . . scaffold192 GLEAN mRNA 24964 25251 0.999536 - . ID=CGI_10023697; scaffold192 WUBlastX DNA_Sola 24964 25251 197 - . . scaffold192 GLEAN mRNA 25403 26296 0.999536 - . ID=CGI_10023697; scaffold192 WUBlastX DNA_Sola 25403 26527 486 - . . scaffold192 GLEAN mRNA 24964 25320 0.999536 - . ID=CGI_10023697; scaffold192 WUBlastX DNA_Sola 24964 25320 156 - . . scaffold192 GLEAN mRNA 50454 50600 0.99996 + . ID=CGI_10023698; scaffold192 TRF Tandem_Repeat 50454 50600 73 + . . scaffold192 GLEAN mRNA 50521 50664 0.99996 + . ID=CGI_10023698; scaffold192 TRF Tandem_Repeat 50521 50664 96 + . . scaffold192 GLEAN mRNA 102867 103057 0.813912 - . ID=CGI_10023700; scaffold192 TRF Tandem_Repeat 102867 103057 239 + . . scaffold192 GLEAN mRNA 154204 154241 1 + . ID=CGI_10023704; scaffold192 TRF Tandem_Repeat 154204 154241 76 + . . scaffold192 GLEAN mRNA 166707 166750 1 + . ID=CGI_10023704; scaffold192 TRF Tandem_Repeat 166707 166750 70 + . . scaffold192 GLEAN mRNA 172436 172460 1 + . ID=CGI_10023704; scaffold192 TRF Tandem_Repeat 172436 172460 50 + . . scaffold192 GLEAN mRNA 190899 190948 0.999702 - . ID=CGI_10023705; scaffold192 TRF Tandem_Repeat 190899 190948 100 + . . scaffold192 GLEAN mRNA 209436 209494 0.999702 - . ID=CGI_10023706; scaffold192 TRF Tandem_Repeat 209436 209494 118 + . . scaffold192 GLEAN mRNA 325568 325630 0.999676 + . ID=CGI_10023713; scaffold192 TRF Tandem_Repeat 325568 325630 96 + . . scaffold192 GLEAN mRNA 381610 381665 0.813856 - . ID=CGI_10023716; scaffold192 TRF Tandem_Repeat 381610 381665 112 + . . scaffold192 GLEAN mRNA 384577 384620 0.813856 - . ID=CGI_10023716; scaffold192 TRF Tandem_Repeat 384577 384620 88 + . . scaffold192 GLEAN mRNA 425625 425732 0.998504 - . ID=CGI_10023717; scaffold192 TRF Tandem_Repeat 425625 425732 51 + . . scaffold192 GLEAN mRNA 429702 429751 0.998504 - . ID=CGI_10023717; scaffold192 TRF Tandem_Repeat 429702 429751 57 + . . scaffold192 GLEAN mRNA 445838 445891 0.998504 - . ID=CGI_10023717; scaffold192 TRF Tandem_Repeat 445838 445891 108 + . . scaffold192 GLEAN mRNA 447073 447122 0.998504 - . ID=CGI_10023717; scaffold192 TRF Tandem_Repeat 447073 447122 100 + . . scaffold192 GLEAN mRNA 465477 465630 0.91719 - . ID=CGI_10023718; scaffold192 TRF Tandem_Repeat 465477 465630 272 + . . scaffold192 GLEAN mRNA 505855 506101 1 - . ID=CGI_10023719; scaffold192 TRF Tandem_Repeat 505855 506101 395 + . . scaffold192 GLEAN mRNA 507304 508669 1 - . ID=CGI_10023719; scaffold192 TRF Tandem_Repeat 507304 508669 2669 + . . scaffold192 GLEAN mRNA 522561 522933 0.809416 + . ID=CGI_10023720; scaffold192 TRF Tandem_Repeat 522561 522933 448 + . . scaffold192 GLEAN mRNA 534990 535037 0.543544 + . ID=CGI_10023721; scaffold192 TRF Tandem_Repeat 534990 535037 96 + . . scaffold192 GLEAN mRNA 535341 535396 0.543544 + . ID=CGI_10023721; scaffold192 TRF Tandem_Repeat 535341 535396 112 + . . scaffold192 GLEAN mRNA 536150 536177 0.543544 + . ID=CGI_10023721; scaffold192 TRF Tandem_Repeat 536150 536177 56 + . . scaffold192 GLEAN mRNA 554366 554419 0.543544 + . ID=CGI_10023721; scaffold192 TRF Tandem_Repeat 554366 554419 99 + . . scaffold192 GLEAN mRNA 553608 553700 0.543544 + . ID=CGI_10023721; scaffold192 WUBlastX LTR_Pao 553608 553700 41 - . . scaffold192 GLEAN mRNA 553442 553606 0.543544 + . ID=CGI_10023721; scaffold192 WUBlastX LTR_Pao 553442 553606 81 - . . scaffold192 GLEAN mRNA 617465 617627 0.999922 - . ID=CGI_10023722; scaffold192 TRF Tandem_Repeat 617465 617627 202 + . . scaffold192 GLEAN mRNA 621122 621228 0.999922 - . ID=CGI_10023722; scaffold192 TRF Tandem_Repeat 621122 621228 87 + . . scaffold192 GLEAN mRNA 621339 621657 0.999922 - . ID=CGI_10023722; scaffold192 TRF Tandem_Repeat 621339 621657 259 + . . scaffold192 GLEAN mRNA 656099 656131 0.999922 - . ID=CGI_10023723; scaffold192 TRF Tandem_Repeat 656099 656131 57 + . . scaffold192 GLEAN mRNA 662987 663043 0.999922 - . ID=CGI_10023723; scaffold192 TRF Tandem_Repeat 662987 663043 114 + . . scaffold192 GLEAN mRNA 671479 671675 0.999922 - . ID=CGI_10023723; scaffold192 TRF Tandem_Repeat 671479 671675 295 + . . scaffold192 GLEAN mRNA 665462 665560 0.999922 - . ID=CGI_10023723; scaffold192 WUBlastX LTR_Gypsy-Gmr1 665462 665560 50 + . . scaffold192 GLEAN mRNA 663920 664060 0.999922 - . ID=CGI_10023723; scaffold192 WUBlastX LTR_Gypsy 663920 664060 33 + . . scaffold192 GLEAN mRNA 664238 664354 0.999922 - . ID=CGI_10023723; scaffold192 WUBlastX LTR_Gypsy 664238 664354 31 + . . scaffold192 GLEAN mRNA 664087 664215 0.999922 - . ID=CGI_10023723; scaffold192 WUBlastX LTR_Gypsy 664087 664215 45 + . . scaffold192 GLEAN mRNA 664217 664345 0.999922 - . ID=CGI_10023723; scaffold192 WUBlastX LTR_Gypsy 664217 664345 29 + . . scaffold192 GLEAN mRNA 664845 665129 0.999922 - . ID=CGI_10023723; scaffold192 WUBlastX LTR_Gypsy 664845 665129 60 + . . scaffold192 GLEAN mRNA 665028 665150 0.999922 - . ID=CGI_10023723; scaffold192 WUBlastX LTR_Gypsy 665028 665150 86 + . . scaffold192 GLEAN mRNA 665462 665587 0.999922 - . ID=CGI_10023723; scaffold192 WUBlastX LTR_Gypsy 665462 665587 50 + . . scaffold192 GLEAN mRNA 665028 665255 0.999922 - . ID=CGI_10023723; scaffold192 WUBlastX LTR_Gypsy 665028 665255 72 + . . scaffold192 GLEAN mRNA 665028 665183 0.999922 - . ID=CGI_10023723; scaffold192 WUBlastX LTR_Gypsy 665028 665183 85 + . . scaffold192 GLEAN mRNA 675916 675965 0.999922 - . ID=CGI_10023723; scaffold192 TRF Tandem_Repeat 675916 675965 68 + . . scaffold192 GLEAN mRNA 675992 676027 0.999922 - . ID=CGI_10023723; scaffold192 TRF Tandem_Repeat 675992 676027 65 + . . scaffold192 GLEAN mRNA 673526 674335 0.999922 - . ID=CGI_10023723; scaffold192 WUBlastX DNA_TcMar-Tc1 673526 674335 482 + . . scaffold192 GLEAN mRNA 673365 673523 0.999922 - . ID=CGI_10023723; scaffold192 WUBlastX DNA_TcMar-Tc1 673365 673523 33 + . . scaffold192 GLEAN mRNA 724647 724678 0.997109 + . ID=CGI_10023725; scaffold192 TRF Tandem_Repeat 724647 724678 55 + . . scaffold192 GLEAN mRNA 724795 725537 0.997109 + . ID=CGI_10023725; scaffold192 TRF Tandem_Repeat 724795 725537 1019 + . . scaffold192 GLEAN mRNA 726467 726680 0.997109 + . ID=CGI_10023725; scaffold192 TRF Tandem_Repeat 726467 726680 83 + . . scaffold192 GLEAN mRNA 754143 757044 0.996806 - . ID=CGI_10023727; scaffold192 TRF Tandem_Repeat 754143 757044 1849 + . . scaffold192 GLEAN mRNA 754297 754661 0.996806 - . ID=CGI_10023727; scaffold192 TRF Tandem_Repeat 754297 754661 247 + . . scaffold192 GLEAN mRNA 754146 756954 0.996806 - . ID=CGI_10023727; scaffold192 TRF Tandem_Repeat 754146 756954 588 + . . scaffold192 GLEAN mRNA 754654 754940 0.996806 - . ID=CGI_10023727; scaffold192 TRF Tandem_Repeat 754654 754940 470 + . . scaffold192 GLEAN mRNA 754602 755001 0.996806 - . ID=CGI_10023727; scaffold192 TRF Tandem_Repeat 754602 755001 464 + . . scaffold192 GLEAN mRNA 754154 757044 0.996806 - . ID=CGI_10023727; scaffold192 TRF Tandem_Repeat 754154 757044 1273 + . . scaffold192 GLEAN mRNA 754143 756954 0.996806 - . ID=CGI_10023727; scaffold192 TRF Tandem_Repeat 754143 756954 679 + . . scaffold192 GLEAN mRNA 755465 756952 0.996806 - . ID=CGI_10023727; scaffold192 TRF Tandem_Repeat 755465 756952 476 + . . scaffold192 GLEAN mRNA 776391 776433 0.990769 - . ID=CGI_10023729; scaffold192 TRF Tandem_Repeat 776391 776433 77 + . . scaffold192 GLEAN mRNA 776530 776579 0.990769 - . ID=CGI_10023729; scaffold192 TRF Tandem_Repeat 776530 776579 91 + . . scaffold1307 GLEAN mRNA 9655 10338 0.745308 + . ID=CGI_10023739; scaffold1307 WUBlastX DNA_IS4EU 9655 10338 353 + . . scaffold1307 GLEAN mRNA 10951 11217 0.745308 + . ID=CGI_10023739; scaffold1307 WUBlastX DNA_IS4EU 10951 11217 169 + . . scaffold1307 GLEAN mRNA 11612 11806 0.745308 + . ID=CGI_10023739; scaffold1307 WUBlastX DNA_IS4EU 11612 11806 31 - . . scaffold1307 GLEAN mRNA 11163 11291 0.745308 + . ID=CGI_10023739; scaffold1307 WUBlastX DNA_IS4EU 11163 11291 31 + . . scaffold1307 GLEAN mRNA 9310 10338 0.745308 + . ID=CGI_10023739; scaffold1307 WUBlastX DNA_Kolobok-IS4 9310 10338 250 + . . scaffold1307 GLEAN mRNA 18320 18478 0.745308 + . ID=CGI_10023739; scaffold1307 WUBlastX LINE_RTE-X 18320 18478 23 - . . scaffold1307 GLEAN mRNA 18069 18356 0.745308 + . ID=CGI_10023739; scaffold1307 WUBlastX LINE_RTE-X 18069 18356 93 - . . scaffold1307 GLEAN mRNA 18087 18407 0.745308 + . ID=CGI_10023739; scaffold1307 WUBlastX LINE_RTE-X 18087 18407 49 - . . scaffold1307 GLEAN mRNA 17943 18389 0.745308 + . ID=CGI_10023739; scaffold1307 WUBlastX LINE_RTE-X 17943 18389 28 - . . scaffold1307 GLEAN mRNA 119339 119427 0.57245 + . ID=CGI_10023745; scaffold1307 TRF Tandem_Repeat 119339 119427 178 + . . scaffold1307 GLEAN mRNA 122860 123000 0.57245 + . ID=CGI_10023745; scaffold1307 TRF Tandem_Repeat 122860 123000 99 + . . scaffold1307 GLEAN mRNA 136397 136429 0.801867 - . ID=CGI_10023746; scaffold1307 TRF Tandem_Repeat 136397 136429 50 + . . scaffold1307 GLEAN mRNA 137638 137686 0.801867 - . ID=CGI_10023746; scaffold1307 TRF Tandem_Repeat 137638 137686 71 + . . scaffold1307 GLEAN mRNA 140142 140704 0.801867 - . ID=CGI_10023746; scaffold1307 TRF Tandem_Repeat 140142 140704 955 + . . scaffold1307 GLEAN mRNA 140970 141052 0.801867 - . ID=CGI_10023746; scaffold1307 TRF Tandem_Repeat 140970 141052 123 + . . scaffold1307 GLEAN mRNA 140182 140704 0.5 + . ID=CGI_10023747; scaffold1307 TRF Tandem_Repeat 140142 140704 955 + . . scaffold1307 GLEAN mRNA 162793 163072 0.999637 + . ID=CGI_10023748; scaffold1307 TRF Tandem_Repeat 162793 163072 274 + . . scaffold1307 GLEAN mRNA 162855 162978 0.999637 + . ID=CGI_10023748; scaffold1307 TRF Tandem_Repeat 162855 162978 88 + . . scaffold1307 GLEAN mRNA 163902 163995 0.999637 + . ID=CGI_10023748; scaffold1307 TRF Tandem_Repeat 163902 163995 134 + . . scaffold1307 GLEAN mRNA 165512 165605 0.999637 + . ID=CGI_10023748; scaffold1307 TRF Tandem_Repeat 165512 165605 152 + . . scaffold1307 GLEAN mRNA 331868 332767 0.901731 + . ID=CGI_10023754; scaffold1307 WUBlastX LTR_Gypsy-Cigr 331868 332917 356 + . . scaffold1307 GLEAN mRNA 331469 331624 0.901731 + . ID=CGI_10023754; scaffold1307 WUBlastX LTR_Gypsy 331469 331624 45 + . . scaffold1307 GLEAN mRNA 330696 331520 0.901731 + . ID=CGI_10023754; scaffold1307 WUBlastX LTR_Gypsy 330696 331520 483 + . . scaffold1307 GLEAN mRNA 331562 332701 0.901731 + . ID=CGI_10023754; scaffold1307 WUBlastX LTR_Gypsy 331562 332701 1111 + . . scaffold1307 GLEAN mRNA 406124 406910 0.966019 - . ID=CGI_10023758; scaffold1307 TRF Tandem_Repeat 406124 406910 1259 + . . scaffold1307 GLEAN mRNA 416375 416511 0.966019 - . ID=CGI_10023758; scaffold1307 TRF Tandem_Repeat 416375 416511 118 + . . scaffold1307 GLEAN mRNA 416375 416511 0.966019 - . ID=CGI_10023758; scaffold1307 TRF Tandem_Repeat 416375 416511 97 + . . scaffold1307 GLEAN mRNA 421018 421044 0.966019 - . ID=CGI_10023758; scaffold1307 TRF Tandem_Repeat 421018 421044 54 + . . scaffold1307 GLEAN mRNA 437551 437934 0.999027 + . ID=CGI_10023759; scaffold1307 WUBlastX LINE_RTE-X 437551 437934 77 + . . scaffold1307 GLEAN mRNA 458420 458935 0.999431 - . ID=CGI_10023761; scaffold1307 WUBlastX DNA_TcMar-Tc1 458420 458935 138 - . . scaffold1307 GLEAN mRNA 471697 472312 0.998805 - . ID=CGI_10023763; scaffold1307 TRF Tandem_Repeat 471697 472312 1126 + . . scaffold1307 GLEAN mRNA 493736 493784 0.920529 + . ID=CGI_10023764; scaffold1307 TRF Tandem_Repeat 493736 493784 98 + . . scaffold1307 GLEAN mRNA 495475 495500 0.920529 + . ID=CGI_10023764; scaffold1307 TRF Tandem_Repeat 495475 495500 52 + . . scaffold1307 GLEAN mRNA 511930 511972 0.366202 - . ID=CGI_10023765; scaffold1307 TRF Tandem_Repeat 511930 511972 86 + . . scaffold1307 GLEAN mRNA 519828 519996 0.366202 - . ID=CGI_10023765; scaffold1307 TRF Tandem_Repeat 519828 519996 126 + . . scaffold1307 GLEAN mRNA 524271 524563 0.366202 - . ID=CGI_10023765; scaffold1307 TRF Tandem_Repeat 524271 524563 435 + . . scaffold1307 GLEAN mRNA 532218 532280 0.774608 - . ID=CGI_10023767; scaffold1307 TRF Tandem_Repeat 532218 532280 126 + . . scaffold1307 GLEAN mRNA 549362 550819 0.774608 - . ID=CGI_10023767; scaffold1307 TRF Tandem_Repeat 549362 550819 2281 + . . scaffold1307 GLEAN mRNA 549362 550819 0.774608 - . ID=CGI_10023767; scaffold1307 TRF Tandem_Repeat 549362 550819 2320 + . . scaffold1307 GLEAN mRNA 550850 550909 0.774608 - . ID=CGI_10023767; scaffold1307 TRF Tandem_Repeat 550850 550909 84 + . . scaffold1307 GLEAN mRNA 589121 589158 0.992394 + . ID=CGI_10023769; scaffold1307 TRF Tandem_Repeat 589121 589158 76 + . . scaffold1307 GLEAN mRNA 594544 595954 0.992394 + . ID=CGI_10023769; scaffold1307 TRF Tandem_Repeat 594544 595954 2056 + . . scaffold1307 GLEAN mRNA 596033 596261 0.992394 + . ID=CGI_10023769; scaffold1307 TRF Tandem_Repeat 596033 596261 133 + . . scaffold1307 GLEAN mRNA 592125 592307 0.992394 + . ID=CGI_10023769; scaffold1307 WUBlastX LTR_Gypsy 592125 592307 94 + . . scaffold1307 GLEAN mRNA 592071 592307 0.992394 + . ID=CGI_10023769; scaffold1307 WUBlastX LTR_Gypsy 592071 592307 83 + . . scaffold1307 GLEAN mRNA 592391 592444 0.992394 + . ID=CGI_10023769; scaffold1307 WUBlastX LTR_Gypsy 592391 592444 22 + . . scaffold1307 GLEAN mRNA 592107 592385 0.992394 + . ID=CGI_10023769; scaffold1307 WUBlastX LTR_Gypsy 592107 592385 67 + . . scaffold1307 GLEAN mRNA 600488 600551 0.723884 + . ID=CGI_10023770; scaffold1307 TRF Tandem_Repeat 600488 600551 103 + . . scaffold1307 GLEAN mRNA 601643 601677 0.723884 + . ID=CGI_10023770; scaffold1307 TRF Tandem_Repeat 601643 601677 70 + . . scaffold1307 GLEAN mRNA 602217 602270 0.723884 + . ID=CGI_10023770; scaffold1307 TRF Tandem_Repeat 602217 602270 108 + . . scaffold1307 GLEAN mRNA 621930 622861 1 - . ID=CGI_10023774; scaffold1307 TRF Tandem_Repeat 621930 622861 1047 + . . scaffold1307 GLEAN mRNA 629897 630145 0.991393 - . ID=CGI_10023775; scaffold1307 TRF Tandem_Repeat 629897 630145 471 + . . scaffold1307 GLEAN mRNA 631695 633196 0.991393 - . ID=CGI_10023775; scaffold1307 TRF Tandem_Repeat 631695 633196 2314 + . . scaffold1307 GLEAN mRNA 631695 633196 0.991393 - . ID=CGI_10023775; scaffold1307 TRF Tandem_Repeat 631695 633196 2337 + . . scaffold1307 GLEAN mRNA 634173 634424 0.991393 - . ID=CGI_10023775; scaffold1307 WUBlastX DNA_hAT-Blackja 634173 634424 66 - . . scaffold1307 GLEAN mRNA 639084 639143 0.991393 - . ID=CGI_10023775; scaffold1307 TRF Tandem_Repeat 639084 639143 120 + . . scaffold1307 GLEAN mRNA 639141 639179 0.991393 - . ID=CGI_10023775; scaffold1307 TRF Tandem_Repeat 639141 639179 53 + . . scaffold1307 GLEAN mRNA 639443 639482 0.991393 - . ID=CGI_10023775; scaffold1307 TRF Tandem_Repeat 639443 639482 80 + . . scaffold1307 GLEAN mRNA 639955 640002 0.991393 - . ID=CGI_10023775; scaffold1307 TRF Tandem_Repeat 639955 640002 96 + . . scaffold1307 GLEAN mRNA 647625 647962 0.999676 + . ID=CGI_10023776; scaffold1307 TRF Tandem_Repeat 647625 647962 359 + . . scaffold1307 GLEAN mRNA 652803 653060 0.999676 + . ID=CGI_10023776; scaffold1307 TRF Tandem_Repeat 652803 653060 293 + . . scaffold1307 GLEAN mRNA 678449 678701 1 + . ID=CGI_10023781; scaffold1307 TRF Tandem_Repeat 678449 678701 158 + . . scaffold1307 GLEAN mRNA 678721 678897 1 + . ID=CGI_10023781; scaffold1307 TRF Tandem_Repeat 678721 678897 216 + . . scaffold1189 GLEAN mRNA 42958 42988 1 + . ID=CGI_10023793; scaffold1189 TRF Tandem_Repeat 42958 42988 53 + . . scaffold1189 GLEAN mRNA 37489 37869 1 + . ID=CGI_10023793; scaffold1189 WUBlastX DNA_Zator 37489 37869 52 - . . scaffold1189 GLEAN mRNA 71391 71445 0.98795 + . ID=CGI_10023796; scaffold1189 TRF Tandem_Repeat 71391 71445 110 + . . scaffold1189 GLEAN mRNA 109884 109922 0.673803 - . ID=CGI_10023798; scaffold1189 TRF Tandem_Repeat 109884 109922 60 + . . scaffold1189 GLEAN mRNA 140522 140573 1 + . ID=CGI_10023800; scaffold1189 TRF Tandem_Repeat 140522 140573 104 + . . scaffold1189 GLEAN mRNA 141221 141424 1 + . ID=CGI_10023800; scaffold1189 WUBlastX LINE_L1-Tx1 141221 141424 38 - . . scaffold1189 GLEAN mRNA 154047 154097 1 + . ID=CGI_10023801; scaffold1189 TRF Tandem_Repeat 154047 154097 102 + . . scaffold1189 GLEAN mRNA 154936 154989 1 + . ID=CGI_10023801; scaffold1189 TRF Tandem_Repeat 154936 154989 65 + . . scaffold1189 GLEAN mRNA 157242 157282 0.999922 + . ID=CGI_10023802; scaffold1189 TRF Tandem_Repeat 157242 157282 82 + . . scaffold1189 GLEAN mRNA 225836 226265 0.889914 - . ID=CGI_10023805; scaffold1189 TRF Tandem_Repeat 225836 226265 554 + . . scaffold1189 GLEAN mRNA 248328 248365 0.97837 + . ID=CGI_10023806; scaffold1189 TRF Tandem_Repeat 248328 248365 76 + . . scaffold1189 GLEAN mRNA 248590 248621 0.97837 + . ID=CGI_10023806; scaffold1189 TRF Tandem_Repeat 248590 248621 57 + . . scaffold1189 GLEAN mRNA 250752 250791 0.97837 + . ID=CGI_10023806; scaffold1189 TRF Tandem_Repeat 250752 250791 80 + . . scaffold1189 GLEAN mRNA 288882 288920 0.981511 + . ID=CGI_10023808; scaffold1189 TRF Tandem_Repeat 288882 288920 78 + . . scaffold1189 GLEAN mRNA 304602 304636 0.981511 + . ID=CGI_10023808; scaffold1189 TRF Tandem_Repeat 304602 304636 70 + . . scaffold1189 GLEAN mRNA 314494 314531 0.981511 + . ID=CGI_10023808; scaffold1189 TRF Tandem_Repeat 314494 314531 76 + . . scaffold1189 GLEAN mRNA 316774 316842 0.981511 + . ID=CGI_10023808; scaffold1189 TRF Tandem_Repeat 316774 316842 50 + . . scaffold1189 GLEAN mRNA 316774 316836 0.981511 + . ID=CGI_10023808; scaffold1189 TRF Tandem_Repeat 316774 316836 54 + . . scaffold1189 GLEAN mRNA 316774 316836 0.981511 + . ID=CGI_10023808; scaffold1189 TRF Tandem_Repeat 316774 316836 58 + . . scaffold1189 GLEAN mRNA 330119 331782 1 - . ID=CGI_10023809; scaffold1189 TRF Tandem_Repeat 330119 331782 1875 + . . scaffold1189 GLEAN mRNA 330618 331742 1 - . ID=CGI_10023809; scaffold1189 TRF Tandem_Repeat 330618 331742 990 + . . scaffold1189 GLEAN mRNA 330187 331755 1 - . ID=CGI_10023809; scaffold1189 TRF Tandem_Repeat 330187 331755 1803 + . . scaffold1189 GLEAN mRNA 403277 403307 1 + . ID=CGI_10023812; scaffold1189 TRF Tandem_Repeat 403277 403307 62 + . . scaffold1189 GLEAN mRNA 403305 403348 1 + . ID=CGI_10023812; scaffold1189 TRF Tandem_Repeat 403305 403348 88 + . . scaffold1189 GLEAN mRNA 410774 410893 0.920284 + . ID=CGI_10023813; scaffold1189 TRF Tandem_Repeat 410774 410893 135 + . . scaffold1189 GLEAN mRNA 411495 411758 0.920284 + . ID=CGI_10023813; scaffold1189 TRF Tandem_Repeat 411495 411758 384 + . . scaffold1189 GLEAN mRNA 411495 411795 0.920284 + . ID=CGI_10023813; scaffold1189 TRF Tandem_Repeat 411495 411795 334 + . . scaffold1189 GLEAN mRNA 413226 413317 0.920284 + . ID=CGI_10023813; scaffold1189 TRF Tandem_Repeat 413226 413317 112 + . . scaffold1189 GLEAN mRNA 413228 413317 0.920284 + . ID=CGI_10023813; scaffold1189 TRF Tandem_Repeat 413228 413317 126 + . . scaffold1189 GLEAN mRNA 424245 424364 0.242551 + . ID=CGI_10023814; scaffold1189 TRF Tandem_Repeat 424245 424364 199 + . . scaffold1189 GLEAN mRNA 519282 519364 1 - . ID=CGI_10023820; scaffold1189 TRF Tandem_Repeat 519282 519364 96 + . . scaffold1189 GLEAN mRNA 519288 519376 1 - . ID=CGI_10023820; scaffold1189 TRF Tandem_Repeat 519288 519376 137 + . . scaffold1189 GLEAN mRNA 519298 519389 1 - . ID=CGI_10023820; scaffold1189 TRF Tandem_Repeat 519298 519389 75 + . . scaffold1189 GLEAN mRNA 519439 519489 1 - . ID=CGI_10023820; scaffold1189 TRF Tandem_Repeat 519439 519489 77 + . . scaffold1189 GLEAN mRNA 569189 569248 0.997699 + . ID=CGI_10023823; scaffold1189 TRF Tandem_Repeat 569189 569248 120 + . . scaffold1189 GLEAN mRNA 577114 577407 0.997699 + . ID=CGI_10023823; scaffold1189 WUBlastX LINE_RTE-X 577114 577422 48 - . . scaffold1189 GLEAN mRNA 577183 577407 0.997699 + . ID=CGI_10023823; scaffold1189 WUBlastX LINE_CR1 577183 577689 23 - . . scaffold1189 GLEAN mRNA 582621 582701 0.759763 + . ID=CGI_10023824; scaffold1189 TRF Tandem_Repeat 582621 582701 162 + . . scaffold1189 GLEAN mRNA 636263 636313 1 - . ID=CGI_10023828; scaffold1189 WUBlastX LINE_L1 636263 636313 21 - . . scaffold1189 GLEAN mRNA 635440 635721 1 - . ID=CGI_10023828; scaffold1189 WUBlastX LINE_L1 635440 635721 56 - . . scaffold1189 GLEAN mRNA 633958 634836 1 - . ID=CGI_10023828; scaffold1189 WUBlastX LINE_L1-Tx1 633958 634836 129 - . . scaffold1189 GLEAN mRNA 634946 635554 1 - . ID=CGI_10023828; scaffold1189 WUBlastX LINE_L1-Tx1 634946 635554 344 - . . scaffold1189 GLEAN mRNA 636354 636728 1 - . ID=CGI_10023828; scaffold1189 WUBlastX LINE_L1-Tx1 636354 636728 64 - . . scaffold1189 GLEAN mRNA 634809 635063 1 - . ID=CGI_10023828; scaffold1189 WUBlastX LINE_L1 634809 635063 53 - . . scaffold1189 GLEAN mRNA 635437 635676 1 - . ID=CGI_10023828; scaffold1189 WUBlastX LINE_L1-Tx1 635437 635676 131 - . . scaffold1189 GLEAN mRNA 690002 690061 0.718514 + . ID=CGI_10023829; scaffold1189 TRF Tandem_Repeat 690002 690061 120 + . . scaffold1189 GLEAN mRNA 742686 742726 0.99736 - . ID=CGI_10023830; scaffold1189 TRF Tandem_Repeat 742686 742726 82 + . . scaffold1189 GLEAN mRNA 746367 746438 0.99736 - . ID=CGI_10023830; scaffold1189 TRF Tandem_Repeat 746367 746438 137 + . . scaffold1189 GLEAN mRNA 748011 748039 0.99736 - . ID=CGI_10023830; scaffold1189 TRF Tandem_Repeat 748011 748039 58 + . . scaffold1189 GLEAN mRNA 760301 760353 1 + . ID=CGI_10023831; scaffold1189 TRF Tandem_Repeat 760301 760353 54 + . . scaffold1189 GLEAN mRNA 774153 774281 0.392072 + . ID=CGI_10023832; scaffold1189 WUBlastX LINE_RTE-X 774153 774281 38 - . . scaffold1189 GLEAN mRNA 774029 774130 0.392072 + . ID=CGI_10023832; scaffold1189 WUBlastX LINE_RTE-X 774029 774130 46 - . . scaffold1189 GLEAN mRNA 773366 773863 0.392072 + . ID=CGI_10023832; scaffold1189 WUBlastX LINE_RTE-X 773366 773863 103 - . . scaffold1189 GLEAN mRNA 774029 774160 0.392072 + . ID=CGI_10023832; scaffold1189 WUBlastX LINE_RTE-X 774029 774160 27 - . . scaffold1189 GLEAN mRNA 773453 773947 0.392072 + . ID=CGI_10023832; scaffold1189 WUBlastX LINE_RTE-X 773453 773947 69 - . . scaffold1189 GLEAN mRNA 780785 780817 0.809091 + . ID=CGI_10023833; scaffold1189 TRF Tandem_Repeat 780785 780817 66 + . . scaffold1189 GLEAN mRNA 797137 797336 1 + . ID=CGI_10023835; scaffold1189 TRF Tandem_Repeat 797137 797336 204 + . . scaffold1189 GLEAN mRNA 806741 806864 0.737324 + . ID=CGI_10023836; scaffold1189 TRF Tandem_Repeat 806741 806864 88 + . . scaffold1189 GLEAN mRNA 806741 806842 0.737324 + . ID=CGI_10023836; scaffold1189 TRF Tandem_Repeat 806741 806842 62 + . . scaffold1189 GLEAN mRNA 806836 807000 0.737324 + . ID=CGI_10023836; scaffold1189 TRF Tandem_Repeat 806836 807000 99 + . . scaffold1189 GLEAN mRNA 806965 807053 0.737324 + . ID=CGI_10023836; scaffold1189 TRF Tandem_Repeat 806965 807053 124 + . . scaffold1189 GLEAN mRNA 823622 823652 0.737324 + . ID=CGI_10023836; scaffold1189 TRF Tandem_Repeat 823622 823652 62 + . . scaffold1189 GLEAN mRNA 836049 836182 0.737324 + . ID=CGI_10023836; scaffold1189 TRF Tandem_Repeat 836049 836182 205 + . . scaffold1189 GLEAN mRNA 837482 837597 0.737324 + . ID=CGI_10023836; scaffold1189 TRF Tandem_Repeat 837482 837597 142 + . . scaffold1189 GLEAN mRNA 837773 837870 0.737324 + . ID=CGI_10023836; scaffold1189 TRF Tandem_Repeat 837773 837870 117 + . . scaffold1189 GLEAN mRNA 819138 819218 0.737324 + . ID=CGI_10023836; scaffold1189 TRF Tandem_Repeat 819138 819218 72 + . . scaffold1189 GLEAN mRNA 818996 819222 0.737324 + . ID=CGI_10023836; scaffold1189 TRF Tandem_Repeat 818996 819222 325 + . . scaffold1189 GLEAN mRNA 847842 848069 0.805708 + . ID=CGI_10023837; scaffold1189 WUBlastX LINE_CR1-L2 847842 848069 93 - . . scaffold1189 GLEAN mRNA 847758 848105 0.805708 + . ID=CGI_10023837; scaffold1189 WUBlastX LINE_CR1-L2 847758 848105 64 - . . scaffold1189 GLEAN mRNA 848087 848128 0.805708 + . ID=CGI_10023837; scaffold1189 WUBlastX LINE_CR1-L2 848087 848128 42 - . . scaffold1189 GLEAN mRNA 847815 848105 0.805708 + . ID=CGI_10023837; scaffold1189 WUBlastX LINE_CR1-L2 847815 848105 78 - . . scaffold406 GLEAN mRNA 11652 11745 0.989974 + . ID=CGI_10023838; scaffold406 TRF Tandem_Repeat 11652 11745 118 + . . scaffold406 GLEAN mRNA 12136 12186 0.989974 + . ID=CGI_10023838; scaffold406 TRF Tandem_Repeat 12136 12186 66 + . . scaffold406 GLEAN mRNA 13302 13387 0.989974 + . ID=CGI_10023838; scaffold406 TRF Tandem_Repeat 13302 13387 97 + . . scaffold406 GLEAN mRNA 19400 19431 0.989974 + . ID=CGI_10023838; scaffold406 TRF Tandem_Repeat 19400 19431 64 + . . scaffold406 GLEAN mRNA 30774 30838 0.989974 + . ID=CGI_10023838; scaffold406 TRF Tandem_Repeat 30774 30838 121 + . . scaffold406 GLEAN mRNA 63392 63904 0.760341 - . ID=CGI_10023839; scaffold406 WUBlastX LTR_Gypsy 63392 63904 503 - . . scaffold406 GLEAN mRNA 63900 64070 0.760341 - . ID=CGI_10023839; scaffold406 WUBlastX LTR_Gypsy 63900 64070 58 - . . scaffold406 GLEAN mRNA 64012 64128 0.760341 - . ID=CGI_10023839; scaffold406 WUBlastX LTR_Gypsy 64012 64128 42 - . . scaffold406 GLEAN mRNA 63254 63901 0.760341 - . ID=CGI_10023839; scaffold406 WUBlastX LTR_Gypsy 63254 63901 207 - . . scaffold406 GLEAN mRNA 63946 64110 0.760341 - . ID=CGI_10023839; scaffold406 WUBlastX LTR_Gypsy 63946 64110 49 - . . scaffold406 GLEAN mRNA 63897 64007 0.760341 - . ID=CGI_10023839; scaffold406 WUBlastX LTR_Gypsy-Cigr 63897 64007 76 - . . scaffold406 GLEAN mRNA 64021 64149 0.760341 - . ID=CGI_10023839; scaffold406 WUBlastX LTR_Gypsy 64021 64149 29 - . . scaffold406 GLEAN mRNA 63912 64025 0.760341 - . ID=CGI_10023839; scaffold406 WUBlastX LTR_Gypsy 63912 64025 61 - . . scaffold406 GLEAN mRNA 77367 77470 0.760341 - . ID=CGI_10023839; scaffold406 TRF Tandem_Repeat 77367 77470 154 + . . scaffold406 GLEAN mRNA 69609 69980 0.760341 - . ID=CGI_10023839; scaffold406 WUBlastX LTR_Gypsy 69609 69980 155 - . . scaffold406 GLEAN mRNA 70153 70905 0.760341 - . ID=CGI_10023839; scaffold406 WUBlastX LINE_L1-Tx1 70153 70905 486 + . . scaffold406 GLEAN mRNA 69609 70073 0.760341 - . ID=CGI_10023839; scaffold406 WUBlastX LTR_Gypsy 69609 70073 47 - . . scaffold406 GLEAN mRNA 131866 131961 0.854188 - . ID=CGI_10023840; scaffold406 TRF Tandem_Repeat 131866 131961 111 + . . scaffold406 GLEAN mRNA 144143 144216 0.854188 - . ID=CGI_10023840; scaffold406 TRF Tandem_Repeat 144143 144216 148 + . . scaffold406 GLEAN mRNA 133968 134033 0.854188 - . ID=CGI_10023840; scaffold406 WUBlastX LTR_Gypsy 133968 134033 21 + . . scaffold406 GLEAN mRNA 135876 136718 0.854188 - . ID=CGI_10023840; scaffold406 WUBlastX LTR_Gypsy 135876 136718 266 + . . scaffold406 GLEAN mRNA 134178 134408 0.854188 - . ID=CGI_10023840; scaffold406 WUBlastX LTR_Gypsy-Cigr 134178 134408 104 + . . scaffold406 GLEAN mRNA 136517 137059 0.854188 - . ID=CGI_10023840; scaffold406 WUBlastX LTR_Gypsy-Cigr 136517 137059 187 + . . scaffold406 GLEAN mRNA 134423 135502 0.854188 - . ID=CGI_10023840; scaffold406 WUBlastX LTR_Gypsy-Cigr 134423 135502 508 + . . scaffold406 GLEAN mRNA 133980 134405 0.854188 - . ID=CGI_10023840; scaffold406 WUBlastX LTR_Gypsy 133980 134405 85 + . . scaffold406 GLEAN mRNA 132527 132640 0.854188 - . ID=CGI_10023840; scaffold406 WUBlastX LTR_Gypsy-Cigr 132527 132640 44 + . . scaffold406 GLEAN mRNA 135492 136523 0.854188 - . ID=CGI_10023840; scaffold406 WUBlastX LTR_Gypsy 135492 136523 586 + . . scaffold406 GLEAN mRNA 134378 134572 0.854188 - . ID=CGI_10023840; scaffold406 WUBlastX LTR_Gypsy 134378 134572 120 + . . scaffold406 GLEAN mRNA 132613 133956 0.854188 - . ID=CGI_10023840; scaffold406 WUBlastX LTR_Gypsy-Cigr 132613 133956 104 + . . scaffold406 GLEAN mRNA 136523 137239 0.854188 - . ID=CGI_10023840; scaffold406 WUBlastX LTR_Gypsy 136523 137239 74 + . . scaffold406 GLEAN mRNA 148031 148065 0.854188 - . ID=CGI_10023840; scaffold406 TRF Tandem_Repeat 148031 148065 70 + . . scaffold406 GLEAN mRNA 148063 148093 0.854188 - . ID=CGI_10023840; scaffold406 TRF Tandem_Repeat 148063 148093 62 + . . scaffold406 GLEAN mRNA 376002 376181 0.990609 + . ID=CGI_10023846; scaffold406 WUBlastX DNA_Kolobok 376002 376181 28 + . . scaffold406 GLEAN mRNA 403628 404235 0.999901 + . ID=CGI_10023847; scaffold406 TRF Tandem_Repeat 403628 404235 1180 + . . scaffold406 GLEAN mRNA 406041 406088 0.999901 + . ID=CGI_10023847; scaffold406 TRF Tandem_Repeat 406041 406088 51 + . . scaffold406 GLEAN mRNA 406473 406532 0.999901 + . ID=CGI_10023847; scaffold406 TRF Tandem_Repeat 406473 406532 66 + . . scaffold406 GLEAN mRNA 406480 406538 0.999901 + . ID=CGI_10023847; scaffold406 TRF Tandem_Repeat 406480 406538 64 + . . scaffold406 GLEAN mRNA 409698 409736 0.999901 + . ID=CGI_10023847; scaffold406 TRF Tandem_Repeat 409698 409736 78 + . . scaffold406 GLEAN mRNA 415111 415332 0.999901 + . ID=CGI_10023847; scaffold406 TRF Tandem_Repeat 415111 415332 342 + . . scaffold406 GLEAN mRNA 418511 419830 0.999901 + . ID=CGI_10023847; scaffold406 TRF Tandem_Repeat 418511 419830 1814 + . . scaffold406 GLEAN mRNA 422728 422763 0.999901 + . ID=CGI_10023847; scaffold406 TRF Tandem_Repeat 422728 422763 72 + . . scaffold406 GLEAN mRNA 424555 424590 0.999901 + . ID=CGI_10023847; scaffold406 TRF Tandem_Repeat 424555 424590 72 + . . scaffold406 GLEAN mRNA 413964 415016 0.999901 + . ID=CGI_10023847; scaffold406 WUBlastX DNA_MuDR 413964 415016 190 - . . scaffold406 GLEAN mRNA 413829 414755 0.999901 + . ID=CGI_10023847; scaffold406 WUBlastX DNA_MuDR 413829 414755 307 - . . scaffold406 GLEAN mRNA 421815 422372 0.999901 + . ID=CGI_10023847; scaffold406 WUBlastX LINE_RTE-X 421815 422372 104 + . . scaffold406 GLEAN mRNA 519535 519585 0.999184 + . ID=CGI_10023854; scaffold406 TRF Tandem_Repeat 519535 519585 102 + . . scaffold406 GLEAN mRNA 577524 577583 0.55465 - . ID=CGI_10023859; scaffold406 WUBlastX DNA_hAT-Blackja 577524 577583 29 - . . scaffold406 GLEAN mRNA 641839 642616 1 + . ID=CGI_10023862; scaffold406 TRF Tandem_Repeat 640847 642616 2322 + . . scaffold406 GLEAN mRNA 664369 664629 0.776794 - . ID=CGI_10023865; scaffold406 WUBlastX DNA_TcMar-ISRm1 664369 664932 55 - . . scaffold406 GLEAN mRNA 669220 669267 0.451437 + . ID=CGI_10023866; scaffold406 TRF Tandem_Repeat 669220 669267 96 + . . scaffold406 GLEAN mRNA 690542 690601 0.998232 - . ID=CGI_10023867; scaffold406 TRF Tandem_Repeat 690542 690601 93 + . . scaffold406 GLEAN mRNA 690628 691752 0.998232 - . ID=CGI_10023867; scaffold406 TRF Tandem_Repeat 690628 691752 1575 + . . scaffold406 GLEAN mRNA 750795 754559 0.587095 + . ID=CGI_10023870; scaffold406 WUBlastX LINE_L1-Tx1 750795 754559 1932 + . . scaffold406 GLEAN mRNA 793742 793971 0.499911 - . ID=CGI_10023873; scaffold406 TRF Tandem_Repeat 793742 793971 361 + . . scaffold406 GLEAN mRNA 794586 794834 0.499911 - . ID=CGI_10023873; scaffold406 TRF Tandem_Repeat 794586 794834 363 + . . scaffold406 GLEAN mRNA 793742 793971 0.997622 + . ID=CGI_10023874; scaffold406 TRF Tandem_Repeat 793742 793971 361 + . . scaffold406 GLEAN mRNA 794586 794834 0.997622 + . ID=CGI_10023874; scaffold406 TRF Tandem_Repeat 794586 794834 363 + . . scaffold406 GLEAN mRNA 827033 827375 0.999937 - . ID=CGI_10023876; scaffold406 TRF Tandem_Repeat 827033 827375 418 + . . scaffold406 GLEAN mRNA 828957 829741 0.999937 - . ID=CGI_10023876; scaffold406 TRF Tandem_Repeat 828957 829741 907 + . . scaffold406 GLEAN mRNA 830567 830683 0.999937 - . ID=CGI_10023876; scaffold406 TRF Tandem_Repeat 830567 830683 168 + . . scaffold406 GLEAN mRNA 861624 862712 1 - . ID=CGI_10023878; scaffold406 TRF Tandem_Repeat 861624 862712 952 + . . scaffold406 GLEAN mRNA 861824 862712 1 - . ID=CGI_10023878; scaffold406 TRF Tandem_Repeat 861824 862712 1132 + . . scaffold48 GLEAN mRNA 29956 30036 0.856948 - . ID=CGI_10023879; scaffold48 TRF Tandem_Repeat 29956 30036 153 + . . scaffold48 GLEAN mRNA 30710 30885 0.856948 - . ID=CGI_10023879; scaffold48 TRF Tandem_Repeat 30710 30885 153 + . . scaffold48 GLEAN mRNA 31562 31620 0.856948 - . ID=CGI_10023879; scaffold48 TRF Tandem_Repeat 31562 31620 55 + . . scaffold48 GLEAN mRNA 31573 31619 0.856948 - . ID=CGI_10023879; scaffold48 TRF Tandem_Repeat 31573 31619 67 + . . scaffold48 GLEAN mRNA 31569 31620 0.856948 - . ID=CGI_10023879; scaffold48 TRF Tandem_Repeat 31569 31620 86 + . . scaffold48 GLEAN mRNA 90264 90314 1 + . ID=CGI_10023882; scaffold48 TRF Tandem_Repeat 90264 90314 75 + . . scaffold48 GLEAN mRNA 90264 90310 1 + . ID=CGI_10023882; scaffold48 TRF Tandem_Repeat 90264 90310 58 + . . scaffold48 GLEAN mRNA 107780 107840 0.999676 + . ID=CGI_10023883; scaffold48 TRF Tandem_Repeat 107780 107840 122 + . . scaffold48 GLEAN mRNA 126154 126405 0.924637 + . ID=CGI_10023885; scaffold48 WUBlastX DNA_TcMar-Marin 126154 126405 168 + . . scaffold48 GLEAN mRNA 131436 132336 0.924637 + . ID=CGI_10023885; scaffold48 TRF Tandem_Repeat 131436 132336 1529 + . . scaffold48 GLEAN mRNA 139943 140296 0.924637 + . ID=CGI_10023885; scaffold48 WUBlastX LINE_L1-Tx1 139943 140296 85 - . . scaffold48 GLEAN mRNA 208038 209197 1 + . ID=CGI_10023886; scaffold48 TRF Tandem_Repeat 208038 209197 1241 + . . scaffold48 GLEAN mRNA 275086 275265 0.988048 - . ID=CGI_10023891; scaffold48 TRF Tandem_Repeat 275086 275265 263 + . . scaffold48 GLEAN mRNA 278046 278115 0.988048 - . ID=CGI_10023891; scaffold48 TRF Tandem_Repeat 278046 278115 74 + . . scaffold48 GLEAN mRNA 278045 278115 0.988048 - . ID=CGI_10023891; scaffold48 TRF Tandem_Repeat 278045 278115 72 + . . scaffold48 GLEAN mRNA 269636 269848 0.988048 - . ID=CGI_10023891; scaffold48 WUBlastX DNA_hAT-Tip100 269636 269848 67 - . . scaffold48 GLEAN mRNA 297572 297626 0.508741 + . ID=CGI_10023893; scaffold48 TRF Tandem_Repeat 297572 297626 110 + . . scaffold48 GLEAN mRNA 304955 305085 0.508741 + . ID=CGI_10023893; scaffold48 TRF Tandem_Repeat 304955 305085 182 + . . scaffold48 GLEAN mRNA 308670 308732 0.508741 + . ID=CGI_10023893; scaffold48 TRF Tandem_Repeat 308670 308732 90 + . . scaffold48 GLEAN mRNA 309398 309460 0.508741 + . ID=CGI_10023893; scaffold48 TRF Tandem_Repeat 309398 309460 126 + . . scaffold48 GLEAN mRNA 383923 383977 0.499962 + . ID=CGI_10023895; scaffold48 TRF Tandem_Repeat 383923 383977 94 + . . scaffold48 GLEAN mRNA 383923 383977 0.354904 - . ID=CGI_10023897; scaffold48 TRF Tandem_Repeat 383923 383977 94 + . . scaffold48 GLEAN mRNA 408285 408660 0.354904 - . ID=CGI_10023897; scaffold48 TRF Tandem_Repeat 408285 408660 282 + . . scaffold48 GLEAN mRNA 408809 409300 0.354904 - . ID=CGI_10023897; scaffold48 TRF Tandem_Repeat 408809 409300 358 + . . scaffold48 GLEAN mRNA 411814 411855 0.354904 - . ID=CGI_10023897; scaffold48 TRF Tandem_Repeat 411814 411855 84 + . . scaffold48 GLEAN mRNA 423708 423757 0.559676 - . ID=CGI_10023898; scaffold48 TRF Tandem_Repeat 423708 423757 100 + . . scaffold48 GLEAN mRNA 428606 428662 0.559676 - . ID=CGI_10023898; scaffold48 TRF Tandem_Repeat 428606 428662 114 + . . scaffold48 GLEAN mRNA 433505 433897 0.559676 - . ID=CGI_10023898; scaffold48 TRF Tandem_Repeat 433505 433897 588 + . . scaffold48 GLEAN mRNA 457355 457379 0.934257 + . ID=CGI_10023899; scaffold48 TRF Tandem_Repeat 457355 457379 50 + . . scaffold48 GLEAN mRNA 536877 536957 0.928882 + . ID=CGI_10023906; scaffold48 TRF Tandem_Repeat 536877 536957 85 + . . scaffold48 GLEAN mRNA 538954 539032 0.928882 + . ID=CGI_10023906; scaffold48 TRF Tandem_Repeat 538954 539032 144 + . . scaffold48 GLEAN mRNA 530338 530628 0.928882 + . ID=CGI_10023906; scaffold48 WUBlastX DNA_TcMar-Tc2 530338 530628 187 + . . scaffold48 GLEAN mRNA 530580 531206 0.928882 + . ID=CGI_10023906; scaffold48 WUBlastX DNA_TcMar-Tc2 530580 531206 312 + . . scaffold48 GLEAN mRNA 530655 531173 0.928882 + . ID=CGI_10023906; scaffold48 WUBlastX DNA_TcMar-Tc2 530655 531173 417 + . . scaffold48 GLEAN mRNA 570003 570302 0.999025 + . ID=CGI_10023907; scaffold48 TRF Tandem_Repeat 570003 570302 136 + . . scaffold48 GLEAN mRNA 570003 570280 0.999025 + . ID=CGI_10023907; scaffold48 TRF Tandem_Repeat 570003 570280 209 + . . scaffold48 GLEAN mRNA 570031 570272 0.999025 + . ID=CGI_10023907; scaffold48 TRF Tandem_Repeat 570031 570272 205 + . . scaffold48 GLEAN mRNA 636894 636933 0.397814 + . ID=CGI_10023911; scaffold48 TRF Tandem_Repeat 636894 636933 53 + . . scaffold48 GLEAN mRNA 637507 637600 0.397814 + . ID=CGI_10023911; scaffold48 TRF Tandem_Repeat 637507 637600 82 + . . scaffold48 GLEAN mRNA 644333 645019 0.397814 + . ID=CGI_10023911; scaffold48 TRF Tandem_Repeat 644333 645019 1087 + . . scaffold48 GLEAN mRNA 646500 647163 0.397814 + . ID=CGI_10023911; scaffold48 TRF Tandem_Repeat 646500 647163 830 + . . scaffold48 GLEAN mRNA 665793 665878 0.995709 + . ID=CGI_10023913; scaffold48 TRF Tandem_Repeat 665793 665878 127 + . . scaffold48 GLEAN mRNA 672410 672531 0.648545 - . ID=CGI_10023914; scaffold48 TRF Tandem_Repeat 672410 672531 167 + . . scaffold48 GLEAN mRNA 680741 680777 0.999676 - . ID=CGI_10023915; scaffold48 TRF Tandem_Repeat 680741 680777 74 + . . scaffold48 GLEAN mRNA 778127 778404 0.386498 + . ID=CGI_10023918; scaffold48 TRF Tandem_Repeat 778127 778404 276 + . . scaffold48 GLEAN mRNA 778099 778408 0.386498 + . ID=CGI_10023918; scaffold48 TRF Tandem_Repeat 778099 778408 183 + . . scaffold48 GLEAN mRNA 778099 778408 0.386498 + . ID=CGI_10023918; scaffold48 TRF Tandem_Repeat 778099 778408 171 + . . scaffold48 GLEAN mRNA 778701 778788 0.386498 + . ID=CGI_10023918; scaffold48 TRF Tandem_Repeat 778701 778788 115 + . . scaffold48 GLEAN mRNA 778927 778968 0.386498 + . ID=CGI_10023918; scaffold48 TRF Tandem_Repeat 778927 778968 50 + . . scaffold48 GLEAN mRNA 788115 788588 0.386498 + . ID=CGI_10023918; scaffold48 TRF Tandem_Repeat 788115 788588 687 + . . scaffold48 GLEAN mRNA 788115 788588 0.386498 + . ID=CGI_10023918; scaffold48 TRF Tandem_Repeat 788115 788588 774 + . . scaffold48 GLEAN mRNA 817437 817493 0.999674 + . ID=CGI_10023920; scaffold48 TRF Tandem_Repeat 817437 817493 114 + . . scaffold48 GLEAN mRNA 857540 857600 0.994936 - . ID=CGI_10023922; scaffold48 TRF Tandem_Repeat 857540 857600 122 + . . scaffold48 GLEAN mRNA 871633 871835 0.994936 - . ID=CGI_10023922; scaffold48 TRF Tandem_Repeat 871633 871835 370 + . . scaffold48 GLEAN mRNA 871662 871814 0.994936 - . ID=CGI_10023922; scaffold48 TRF Tandem_Repeat 871662 871814 69 + . . scaffold1362 GLEAN mRNA 1295 1325 0.73822 + . ID=CGI_10023924; scaffold1362 TRF Tandem_Repeat 1295 1325 62 + . . scaffold1362 GLEAN mRNA 3803 3879 0.73822 + . ID=CGI_10023924; scaffold1362 TRF Tandem_Repeat 3803 3879 154 + . . scaffold1362 GLEAN mRNA 17270 17315 0.73822 + . ID=CGI_10023924; scaffold1362 TRF Tandem_Repeat 17270 17315 83 + . . scaffold1362 GLEAN mRNA 61548 61582 1 - . ID=CGI_10023927; scaffold1362 TRF Tandem_Repeat 61548 61582 70 + . . scaffold1362 GLEAN mRNA 77133 77163 0.593391 + . ID=CGI_10023928; scaffold1362 TRF Tandem_Repeat 77133 77163 62 + . . scaffold1362 GLEAN mRNA 77611 77664 0.593391 + . ID=CGI_10023928; scaffold1362 TRF Tandem_Repeat 77611 77664 108 + . . scaffold1362 GLEAN mRNA 78405 78446 0.593391 + . ID=CGI_10023928; scaffold1362 TRF Tandem_Repeat 78405 78446 84 + . . scaffold1362 GLEAN mRNA 82063 82096 0.593391 + . ID=CGI_10023928; scaffold1362 TRF Tandem_Repeat 82063 82096 50 + . . scaffold1362 GLEAN mRNA 122134 122168 1 + . ID=CGI_10023929; scaffold1362 TRF Tandem_Repeat 122134 122168 70 + . . scaffold1362 GLEAN mRNA 125555 125598 1 + . ID=CGI_10023929; scaffold1362 TRF Tandem_Repeat 125555 125598 88 + . . scaffold1362 GLEAN mRNA 160728 160783 0.422024 + . ID=CGI_10023931; scaffold1362 TRF Tandem_Repeat 160728 160783 76 + . . scaffold1362 GLEAN mRNA 177027 177089 1 + . ID=CGI_10023932; scaffold1362 TRF Tandem_Repeat 177027 177089 110 + . . scaffold1362 GLEAN mRNA 198881 202513 0.653945 - . ID=CGI_10023934; scaffold1362 WUBlastX LTR_Gypsy 198881 202513 425 + . . scaffold1362 GLEAN mRNA 200288 202450 0.653945 - . ID=CGI_10023934; scaffold1362 WUBlastX LTR_Gypsy 200288 202450 1167 + . . scaffold1362 GLEAN mRNA 201032 203992 0.653945 - . ID=CGI_10023934; scaffold1362 WUBlastX LTR_Gypsy-Cigr 201032 203992 1285 + . . scaffold1362 GLEAN mRNA 226030 226057 0.653945 - . ID=CGI_10023934; scaffold1362 TRF Tandem_Repeat 226030 226057 56 + . . scaffold1362 GLEAN mRNA 233568 233645 0.653945 - . ID=CGI_10023934; scaffold1362 TRF Tandem_Repeat 233568 233645 138 + . . scaffold1362 GLEAN mRNA 235641 235749 0.653945 - . ID=CGI_10023934; scaffold1362 TRF Tandem_Repeat 235641 235749 119 + . . scaffold1362 GLEAN mRNA 265140 265192 0.581781 + . ID=CGI_10023936; scaffold1362 TRF Tandem_Repeat 265140 265192 106 + . . scaffold1362 GLEAN mRNA 268052 268096 0.581781 + . ID=CGI_10023936; scaffold1362 TRF Tandem_Repeat 268052 268096 90 + . . scaffold1362 GLEAN mRNA 277433 277463 0.99239 + . ID=CGI_10023938; scaffold1362 TRF Tandem_Repeat 277433 277463 62 + . . scaffold1362 GLEAN mRNA 349974 349998 0.222082 + . ID=CGI_10023941; scaffold1362 TRF Tandem_Repeat 349974 349998 50 + . . scaffold1362 GLEAN mRNA 384806 384842 0.993856 + . ID=CGI_10023943; scaffold1362 TRF Tandem_Repeat 384806 384842 74 + . . scaffold1362 GLEAN mRNA 501669 502067 1 - . ID=CGI_10023944; scaffold1362 WUBlastX RC_Helitron 501669 502472 51 - . . scaffold1362 GLEAN mRNA 501855 502067 1 - . ID=CGI_10023944; scaffold1362 WUBlastX RC_Helitron 501855 502433 177 - . . scaffold1362 GLEAN mRNA 572964 573362 0.938876 - . ID=CGI_10023946; scaffold1362 WUBlastX DNA_IS4EU 572964 573362 64 - . . scaffold1362 GLEAN mRNA 572375 572548 0.938876 - . ID=CGI_10023946; scaffold1362 WUBlastX DNA_IS4EU 572375 572548 65 - . . scaffold1362 GLEAN mRNA 572964 573455 0.938876 - . ID=CGI_10023946; scaffold1362 WUBlastX DNA_Kolobok-IS4 572964 573455 41 - . . scaffold1362 GLEAN mRNA 590171 590196 0.592228 - . ID=CGI_10023947; scaffold1362 TRF Tandem_Repeat 590171 590196 52 + . . scaffold1362 GLEAN mRNA 602403 602431 0.544851 + . ID=CGI_10023949; scaffold1362 TRF Tandem_Repeat 602403 602431 58 + . . scaffold1362 GLEAN mRNA 604106 604146 0.544851 + . ID=CGI_10023949; scaffold1362 TRF Tandem_Repeat 604106 604146 82 + . . scaffold1362 GLEAN mRNA 607825 607990 0.544851 + . ID=CGI_10023949; scaffold1362 TRF Tandem_Repeat 607825 607990 113 + . . scaffold1362 GLEAN mRNA 607821 607991 0.544851 + . ID=CGI_10023949; scaffold1362 TRF Tandem_Repeat 607821 607991 193 + . . scaffold1362 GLEAN mRNA 607990 608126 0.544851 + . ID=CGI_10023949; scaffold1362 TRF Tandem_Repeat 607990 608126 103 + . . scaffold1362 GLEAN mRNA 608012 608139 0.544851 + . ID=CGI_10023949; scaffold1362 TRF Tandem_Repeat 608012 608139 85 + . . scaffold1362 GLEAN mRNA 613208 613245 0.544851 + . ID=CGI_10023949; scaffold1362 TRF Tandem_Repeat 613208 613245 58 + . . scaffold1362 GLEAN mRNA 613208 613245 1 - . ID=CGI_10023950; scaffold1362 TRF Tandem_Repeat 613208 613245 58 + . . scaffold1362 GLEAN mRNA 622619 622858 0.999846 - . ID=CGI_10023952; scaffold1362 TRF Tandem_Repeat 622619 622858 408 + . . scaffold1362 GLEAN mRNA 700911 700938 0.999895 - . ID=CGI_10023954; scaffold1362 TRF Tandem_Repeat 700911 700938 56 + . . scaffold1362 GLEAN mRNA 698106 698309 0.999895 - . ID=CGI_10023954; scaffold1362 WUBlastX LINE_RTE-X 698106 698309 75 - . . scaffold1362 GLEAN mRNA 698681 698794 0.999895 - . ID=CGI_10023954; scaffold1362 WUBlastX LINE_RTE-X 698681 698794 33 - . . scaffold1362 GLEAN mRNA 698043 698309 0.999895 - . ID=CGI_10023954; scaffold1362 WUBlastX LINE_RTE-X 698043 698309 24 - . . scaffold1362 GLEAN mRNA 698354 698794 0.999895 - . ID=CGI_10023954; scaffold1362 WUBlastX LINE_RTE-X 698354 698794 22 - . . scaffold1362 GLEAN mRNA 796951 796992 0.933506 + . ID=CGI_10023962; scaffold1362 TRF Tandem_Repeat 796951 796992 84 + . . scaffold1362 GLEAN mRNA 800175 800225 0.933506 + . ID=CGI_10023962; scaffold1362 TRF Tandem_Repeat 800175 800225 102 + . . scaffold1362 GLEAN mRNA 832190 832219 0.615405 + . ID=CGI_10023966; scaffold1362 TRF Tandem_Repeat 832190 832219 60 + . . scaffold1362 GLEAN mRNA 867768 869962 0.335196 + . ID=CGI_10023968; scaffold1362 TRF Tandem_Repeat 867768 869962 3195 + . . scaffold1362 GLEAN mRNA 867768 869962 0.335196 + . ID=CGI_10023968; scaffold1362 TRF Tandem_Repeat 867768 869962 3059 + . . scaffold760 GLEAN mRNA 60815 60848 0.36438 + . ID=CGI_10023972; scaffold760 TRF Tandem_Repeat 60815 60848 61 + . . scaffold760 GLEAN mRNA 120823 120876 0.706686 + . ID=CGI_10023976; scaffold760 TRF Tandem_Repeat 120823 120876 108 + . . scaffold760 GLEAN mRNA 125947 126141 0.706686 + . ID=CGI_10023976; scaffold760 TRF Tandem_Repeat 125947 126141 138 + . . scaffold760 GLEAN mRNA 131022 131063 0.706686 + . ID=CGI_10023976; scaffold760 WUBlastX LINE_L1 131022 131063 22 + . . scaffold760 GLEAN mRNA 127617 128279 0.706686 + . ID=CGI_10023976; scaffold760 WUBlastX LINE_L1-Tx1 127617 128279 67 + . . scaffold760 GLEAN mRNA 127785 130661 0.706686 + . ID=CGI_10023976; scaffold760 WUBlastX LINE_L1-Tx1 127785 130661 1616 + . . scaffold760 GLEAN mRNA 127593 127637 0.706686 + . ID=CGI_10023976; scaffold760 WUBlastX LINE_CR1 127593 127637 20 + . . scaffold760 GLEAN mRNA 130774 130974 0.706686 + . ID=CGI_10023976; scaffold760 WUBlastX LINE_L1-Tx1 130774 130974 75 + . . scaffold760 GLEAN mRNA 130657 130962 0.706686 + . ID=CGI_10023976; scaffold760 WUBlastX LINE_L1-Tx1 130657 130962 57 + . . scaffold760 GLEAN mRNA 138625 139008 0.706686 + . ID=CGI_10023976; scaffold760 TRF Tandem_Repeat 138625 139008 529 + . . scaffold760 GLEAN mRNA 130983 131195 0.706686 + . ID=CGI_10023976; scaffold760 WUBlastX LINE_L1-Tx1 130983 131195 21 + . . scaffold760 GLEAN mRNA 154234 154661 0.999029 - . ID=CGI_10023977; scaffold760 TRF Tandem_Repeat 154234 154661 662 + . . scaffold760 GLEAN mRNA 164722 164747 0.999029 - . ID=CGI_10023977; scaffold760 TRF Tandem_Repeat 164722 164747 52 + . . scaffold760 GLEAN mRNA 256175 257070 0.999676 - . ID=CGI_10023980; scaffold760 TRF Tandem_Repeat 256175 257070 911 + . . scaffold760 GLEAN mRNA 257815 258339 0.999676 - . ID=CGI_10023980; scaffold760 TRF Tandem_Repeat 257815 258339 953 + . . scaffold760 GLEAN mRNA 260024 260243 0.999676 - . ID=CGI_10023980; scaffold760 TRF Tandem_Repeat 260024 260243 115 + . . scaffold760 GLEAN mRNA 260172 260258 0.999676 - . ID=CGI_10023980; scaffold760 TRF Tandem_Repeat 260172 260258 81 + . . scaffold760 GLEAN mRNA 270388 270522 0.980373 + . ID=CGI_10023981; scaffold760 TRF Tandem_Repeat 270388 270522 252 + . . scaffold760 GLEAN mRNA 274029 274080 0.980373 + . ID=CGI_10023981; scaffold760 TRF Tandem_Repeat 274029 274080 104 + . . scaffold760 GLEAN mRNA 303341 303712 0.507041 + . ID=CGI_10023983; scaffold760 TRF Tandem_Repeat 303341 303712 674 + . . scaffold760 GLEAN mRNA 309567 309594 0.507041 + . ID=CGI_10023983; scaffold760 TRF Tandem_Repeat 309567 309594 56 + . . scaffold760 GLEAN mRNA 324973 325003 0.507041 + . ID=CGI_10023983; scaffold760 TRF Tandem_Repeat 324973 325003 62 + . . scaffold760 GLEAN mRNA 326133 326209 0.507041 + . ID=CGI_10023983; scaffold760 TRF Tandem_Repeat 326133 326209 154 + . . scaffold760 GLEAN mRNA 326237 326261 0.507041 + . ID=CGI_10023983; scaffold760 TRF Tandem_Repeat 326237 326261 50 + . . scaffold760 GLEAN mRNA 390159 390205 0.968491 - . ID=CGI_10023987; scaffold760 TRF Tandem_Repeat 390159 390205 94 + . . scaffold760 GLEAN mRNA 396080 396143 0.968491 - . ID=CGI_10023987; scaffold760 TRF Tandem_Repeat 396080 396143 128 + . . scaffold760 GLEAN mRNA 416402 416615 0.593157 + . ID=CGI_10023988; scaffold760 TRF Tandem_Repeat 416402 416615 374 + . . scaffold760 GLEAN mRNA 466020 466067 0.999999 + . ID=CGI_10023990; scaffold760 TRF Tandem_Repeat 466020 466067 60 + . . scaffold760 GLEAN mRNA 476412 476482 0.999999 + . ID=CGI_10023990; scaffold760 TRF Tandem_Repeat 476412 476482 142 + . . scaffold760 GLEAN mRNA 480525 480738 0.999999 + . ID=CGI_10023990; scaffold760 TRF Tandem_Repeat 480525 480738 135 + . . scaffold760 GLEAN mRNA 480580 480813 0.999999 + . ID=CGI_10023990; scaffold760 TRF Tandem_Repeat 480580 480813 255 + . . scaffold760 GLEAN mRNA 481026 481085 0.999999 + . ID=CGI_10023990; scaffold760 TRF Tandem_Repeat 481026 481085 113 + . . scaffold760 GLEAN mRNA 528658 528754 1 + . ID=CGI_10023991; scaffold760 TRF Tandem_Repeat 528658 528754 185 + . . scaffold760 GLEAN mRNA 549503 549547 0.602875 + . ID=CGI_10023993; scaffold760 TRF Tandem_Repeat 549503 549547 90 + . . scaffold760 GLEAN mRNA 553940 553976 0.602875 + . ID=CGI_10023993; scaffold760 TRF Tandem_Repeat 553940 553976 74 + . . scaffold760 GLEAN mRNA 553940 553976 0.999997 - . ID=CGI_10023994; scaffold760 TRF Tandem_Repeat 553940 553976 74 + . . scaffold760 GLEAN mRNA 556400 556507 0.999997 - . ID=CGI_10023994; scaffold760 TRF Tandem_Repeat 556400 556507 162 + . . scaffold760 GLEAN mRNA 556400 556507 1 + . ID=CGI_10023995; scaffold760 TRF Tandem_Repeat 556400 556507 162 + . . scaffold760 GLEAN mRNA 590891 591547 0.770917 + . ID=CGI_10023998; scaffold760 TRF Tandem_Repeat 590891 591547 141 + . . scaffold760 GLEAN mRNA 590997 591500 0.770917 + . ID=CGI_10023998; scaffold760 TRF Tandem_Repeat 590997 591500 600 + . . scaffold760 GLEAN mRNA 591314 591547 0.770917 + . ID=CGI_10023998; scaffold760 TRF Tandem_Repeat 591314 591547 220 + . . scaffold760 GLEAN mRNA 595377 595457 0.770917 + . ID=CGI_10023998; scaffold760 TRF Tandem_Repeat 595377 595457 155 + . . scaffold760 GLEAN mRNA 595699 595739 0.770917 + . ID=CGI_10023998; scaffold760 TRF Tandem_Repeat 595699 595739 73 + . . scaffold760 GLEAN mRNA 650567 650612 0.998149 + . ID=CGI_10024000; scaffold760 TRF Tandem_Repeat 650567 650612 92 + . . scaffold760 GLEAN mRNA 654411 654459 0.998149 + . ID=CGI_10024000; scaffold760 TRF Tandem_Repeat 654411 654459 98 + . . scaffold760 GLEAN mRNA 661294 661318 0.998149 + . ID=CGI_10024000; scaffold760 TRF Tandem_Repeat 661294 661318 50 + . . scaffold760 GLEAN mRNA 675456 675642 0.380305 - . ID=CGI_10024001; scaffold760 TRF Tandem_Repeat 675456 675642 203 + . . scaffold760 GLEAN mRNA 692574 692715 0.452832 - . ID=CGI_10024004; scaffold760 TRF Tandem_Repeat 692574 692715 241 + . . scaffold760 GLEAN mRNA 694379 694421 0.452832 - . ID=CGI_10024004; scaffold760 TRF Tandem_Repeat 694379 694421 86 + . . scaffold760 GLEAN mRNA 698867 698997 0.452832 - . ID=CGI_10024004; scaffold760 TRF Tandem_Repeat 698867 698997 199 + . . scaffold760 GLEAN mRNA 701788 701820 0.452832 - . ID=CGI_10024004; scaffold760 TRF Tandem_Repeat 701788 701820 66 + . . scaffold760 GLEAN mRNA 703520 703553 0.452832 - . ID=CGI_10024004; scaffold760 TRF Tandem_Repeat 703520 703553 68 + . . scaffold760 GLEAN mRNA 706042 706097 0.452832 - . ID=CGI_10024004; scaffold760 TRF Tandem_Repeat 706042 706097 112 + . . scaffold760 GLEAN mRNA 708877 710096 0.452832 - . ID=CGI_10024004; scaffold760 TRF Tandem_Repeat 708877 710096 1803 + . . scaffold760 GLEAN mRNA 719884 719951 0.452832 - . ID=CGI_10024004; scaffold760 TRF Tandem_Repeat 719884 719951 127 + . . scaffold760 GLEAN mRNA 729195 729242 0.200868 + . ID=CGI_10024006; scaffold760 TRF Tandem_Repeat 729195 729242 96 + . . scaffold760 GLEAN mRNA 753779 754693 0.738426 + . ID=CGI_10024008; scaffold760 TRF Tandem_Repeat 753779 754693 1662 + . . scaffold760 GLEAN mRNA 762494 763530 0.814068 + . ID=CGI_10024009; scaffold760 TRF Tandem_Repeat 762494 763530 1462 + . . scaffold760 GLEAN mRNA 772879 772905 0.699516 - . ID=CGI_10024010; scaffold760 TRF Tandem_Repeat 772879 772905 54 + . . scaffold760 GLEAN mRNA 773216 773551 0.699516 - . ID=CGI_10024010; scaffold760 TRF Tandem_Repeat 773216 773551 460 + . . scaffold760 GLEAN mRNA 777204 777527 0.699516 - . ID=CGI_10024010; scaffold760 WUBlastX LTR_Pao 777204 777527 26 - . . scaffold760 GLEAN mRNA 794070 794116 0.985265 + . ID=CGI_10024012; scaffold760 TRF Tandem_Repeat 794070 794116 58 + . . scaffold760 GLEAN mRNA 794793 795287 0.985265 + . ID=CGI_10024012; scaffold760 WUBlastX DNA_hAT 794793 795287 48 + . . scaffold760 GLEAN mRNA 799116 799787 0.999169 - . ID=CGI_10024013; scaffold760 WUBlastX LTR_Gypsy-Cigr 799116 799787 261 - . . scaffold760 GLEAN mRNA 800321 800650 0.999169 - . ID=CGI_10024013; scaffold760 WUBlastX LTR_Gypsy 800321 800650 68 - . . scaffold760 GLEAN mRNA 800252 800416 0.999169 - . ID=CGI_10024013; scaffold760 WUBlastX LTR_Gypsy 800252 800416 58 - . . scaffold760 GLEAN mRNA 801393 801725 0.999169 - . ID=CGI_10024013; scaffold760 WUBlastX LTR_Gypsy 801393 801725 95 - . . scaffold760 GLEAN mRNA 801426 801824 0.999169 - . ID=CGI_10024013; scaffold760 WUBlastX LTR_Gypsy 801426 801824 37 - . . scaffold760 GLEAN mRNA 801348 801743 0.999169 - . ID=CGI_10024013; scaffold760 WUBlastX LTR_Gypsy 801348 801743 93 - . . scaffold760 GLEAN mRNA 800303 800416 0.999169 - . ID=CGI_10024013; scaffold760 WUBlastX LTR_Gypsy 800303 800416 74 - . . scaffold760 GLEAN mRNA 799272 799781 0.999169 - . ID=CGI_10024013; scaffold760 WUBlastX LTR_Gypsy-Cigr 799272 799781 353 - . . scaffold760 GLEAN mRNA 800291 800710 0.999169 - . ID=CGI_10024013; scaffold760 WUBlastX LTR_Gypsy 800291 800710 61 - . . scaffold760 GLEAN mRNA 812593 813084 0.54434 + . ID=CGI_10024016; scaffold760 WUBlastX DNA_hAT 812593 813084 80 + . . scaffold760 GLEAN mRNA 826489 826615 0.999624 - . ID=CGI_10024018; scaffold760 TRF Tandem_Repeat 826489 826615 106 + . . scaffold760 GLEAN mRNA 826501 826641 0.999624 - . ID=CGI_10024018; scaffold760 TRF Tandem_Repeat 826501 826641 153 + . . scaffold760 GLEAN mRNA 826490 826723 0.999624 - . ID=CGI_10024018; scaffold760 TRF Tandem_Repeat 826490 826723 282 + . . scaffold760 GLEAN mRNA 826537 826683 0.999624 - . ID=CGI_10024018; scaffold760 TRF Tandem_Repeat 826537 826683 92 + . . scaffold760 GLEAN mRNA 827499 827529 0.999624 - . ID=CGI_10024018; scaffold760 TRF Tandem_Repeat 827499 827529 62 + . . scaffold760 GLEAN mRNA 829338 829380 0.999624 - . ID=CGI_10024018; scaffold760 TRF Tandem_Repeat 829338 829380 86 + . . scaffold760 GLEAN mRNA 830072 830119 0.999624 - . ID=CGI_10024018; scaffold760 TRF Tandem_Repeat 830072 830119 96 + . . scaffold760 GLEAN mRNA 873079 873294 0.544755 + . ID=CGI_10024019; scaffold760 TRF Tandem_Repeat 873079 873294 405 + . . scaffold760 GLEAN mRNA 872316 872456 0.544755 + . ID=CGI_10024019; scaffold760 WUBlastX DNA_Harbinger 872316 872456 40 + . . scaffold760 GLEAN mRNA 885042 885097 1 - . ID=CGI_10024020; scaffold760 TRF Tandem_Repeat 885042 885097 112 + . . scaffold1741 GLEAN mRNA 109253 110077 0.998974 - . ID=CGI_10024023; scaffold1741 TRF Tandem_Repeat 109253 110077 1089 + . . scaffold1741 GLEAN mRNA 112319 112383 0.998974 - . ID=CGI_10024023; scaffold1741 TRF Tandem_Repeat 112319 112383 62 + . . scaffold1741 GLEAN mRNA 144116 144352 0.999285 + . ID=CGI_10024025; scaffold1741 WUBlastX LTR_Gypsy 144113 144352 107 + . . scaffold1741 GLEAN mRNA 144116 144502 0.999285 + . ID=CGI_10024025; scaffold1741 WUBlastX LTR_Gypsy 144110 144502 78 + . . scaffold1741 GLEAN mRNA 144653 144787 0.999285 + . ID=CGI_10024025; scaffold1741 WUBlastX LTR_Pao 144653 144787 25 + . . scaffold1741 GLEAN mRNA 186465 186546 0.999966 + . ID=CGI_10024026; scaffold1741 TRF Tandem_Repeat 186465 186546 125 + . . scaffold1741 GLEAN mRNA 187212 187332 0.999966 + . ID=CGI_10024026; scaffold1741 TRF Tandem_Repeat 187212 187332 127 + . . scaffold1741 GLEAN mRNA 191340 191373 0.999966 + . ID=CGI_10024026; scaffold1741 TRF Tandem_Repeat 191340 191373 59 + . . scaffold1741 GLEAN mRNA 193811 193915 0.999966 + . ID=CGI_10024026; scaffold1741 TRF Tandem_Repeat 193811 193915 97 + . . scaffold1741 GLEAN mRNA 195233 195267 0.999966 + . ID=CGI_10024026; scaffold1741 TRF Tandem_Repeat 195233 195267 70 + . . scaffold1741 GLEAN mRNA 197349 197421 0.999966 + . ID=CGI_10024026; scaffold1741 TRF Tandem_Repeat 197349 197421 92 + . . scaffold1741 GLEAN mRNA 213943 213990 0.644659 - . ID=CGI_10024028; scaffold1741 TRF Tandem_Repeat 213943 213990 96 + . . scaffold1741 GLEAN mRNA 214863 214907 0.644659 - . ID=CGI_10024028; scaffold1741 TRF Tandem_Repeat 214863 214907 90 + . . scaffold1741 GLEAN mRNA 227427 227478 0.969428 + . ID=CGI_10024029; scaffold1741 TRF Tandem_Repeat 227427 227478 104 + . . scaffold1741 GLEAN mRNA 228994 229032 0.969428 + . ID=CGI_10024029; scaffold1741 TRF Tandem_Repeat 228994 229032 78 + . . scaffold1741 GLEAN mRNA 229415 229476 0.969428 + . ID=CGI_10024029; scaffold1741 TRF Tandem_Repeat 229415 229476 115 + . . scaffold1741 GLEAN mRNA 244642 244736 0.999997 + . ID=CGI_10024031; scaffold1741 TRF Tandem_Repeat 244642 244736 124 + . . scaffold1741 GLEAN mRNA 245852 245917 0.999997 + . ID=CGI_10024031; scaffold1741 TRF Tandem_Repeat 245852 245917 123 + . . scaffold1741 GLEAN mRNA 252844 252887 0.992509 + . ID=CGI_10024032; scaffold1741 TRF Tandem_Repeat 252844 252887 52 + . . scaffold1741 GLEAN mRNA 257408 257486 0.999999 + . ID=CGI_10024033; scaffold1741 TRF Tandem_Repeat 257408 257486 68 + . . scaffold1741 GLEAN mRNA 258890 258981 0.999999 + . ID=CGI_10024033; scaffold1741 TRF Tandem_Repeat 258890 258981 139 + . . scaffold1741 GLEAN mRNA 258985 259023 0.999999 + . ID=CGI_10024033; scaffold1741 TRF Tandem_Repeat 258985 259023 69 + . . scaffold1741 GLEAN mRNA 370644 370716 0.453716 + . ID=CGI_10024036; scaffold1741 TRF Tandem_Repeat 370644 370716 146 + . . scaffold1741 GLEAN mRNA 383668 383720 0.453716 + . ID=CGI_10024036; scaffold1741 TRF Tandem_Repeat 383668 383720 106 + . . scaffold1741 GLEAN mRNA 384453 384508 0.453716 + . ID=CGI_10024036; scaffold1741 TRF Tandem_Repeat 384453 384508 112 + . . scaffold1741 GLEAN mRNA 388730 388773 0.453716 + . ID=CGI_10024036; scaffold1741 TRF Tandem_Repeat 388730 388773 61 + . . scaffold1741 GLEAN mRNA 393651 394890 0.990718 + . ID=CGI_10024037; scaffold1741 TRF Tandem_Repeat 393651 394890 1545 + . . scaffold1741 GLEAN mRNA 401126 401183 0.990718 + . ID=CGI_10024037; scaffold1741 TRF Tandem_Repeat 401126 401183 116 + . . scaffold1741 GLEAN mRNA 407828 407866 0.999351 - . ID=CGI_10024038; scaffold1741 TRF Tandem_Repeat 407828 407866 78 + . . scaffold1741 GLEAN mRNA 455786 457199 1 - . ID=CGI_10024040; scaffold1741 TRF Tandem_Repeat 455786 457199 1264 + . . scaffold1741 GLEAN mRNA 456386 457199 1 - . ID=CGI_10024040; scaffold1741 TRF Tandem_Repeat 456386 457199 754 + . . scaffold1741 GLEAN mRNA 475793 475929 0.400236 - . ID=CGI_10024041; scaffold1741 TRF Tandem_Repeat 475793 475929 184 + . . scaffold1741 GLEAN mRNA 476157 476278 0.400236 - . ID=CGI_10024041; scaffold1741 TRF Tandem_Repeat 476157 476278 118 + . . scaffold1741 GLEAN mRNA 476548 476639 0.400236 - . ID=CGI_10024041; scaffold1741 TRF Tandem_Repeat 476548 476639 103 + . . scaffold1741 GLEAN mRNA 478743 478782 0.400236 - . ID=CGI_10024041; scaffold1741 TRF Tandem_Repeat 478743 478782 80 + . . scaffold1741 GLEAN mRNA 512253 513322 0.999949 - . ID=CGI_10024043; scaffold1741 TRF Tandem_Repeat 512253 513322 1525 + . . scaffold1741 GLEAN mRNA 515194 515241 0.999949 - . ID=CGI_10024043; scaffold1741 TRF Tandem_Repeat 515194 515241 96 + . . scaffold1741 GLEAN mRNA 517241 517322 0.999949 - . ID=CGI_10024043; scaffold1741 TRF Tandem_Repeat 517241 517322 155 + . . scaffold1741 GLEAN mRNA 531534 531770 0.999288 + . ID=CGI_10024044; scaffold1741 TRF Tandem_Repeat 531534 531770 325 + . . scaffold1741 GLEAN mRNA 536404 536543 0.999288 + . ID=CGI_10024044; scaffold1741 TRF Tandem_Repeat 536404 536543 121 + . . scaffold1741 GLEAN mRNA 537021 537112 0.999288 + . ID=CGI_10024044; scaffold1741 TRF Tandem_Repeat 537021 537112 112 + . . scaffold1741 GLEAN mRNA 541034 541289 0.999288 + . ID=CGI_10024044; scaffold1741 TRF Tandem_Repeat 541034 541289 379 + . . scaffold1741 GLEAN mRNA 548762 548788 0.999288 + . ID=CGI_10024044; scaffold1741 TRF Tandem_Repeat 548762 548788 54 + . . scaffold1741 GLEAN mRNA 566205 566244 0.763619 + . ID=CGI_10024045; scaffold1741 TRF Tandem_Repeat 566205 566244 80 + . . scaffold1741 GLEAN mRNA 566714 566877 0.763619 + . ID=CGI_10024045; scaffold1741 TRF Tandem_Repeat 566714 566877 328 + . . scaffold1741 GLEAN mRNA 577247 577343 0.201236 + . ID=CGI_10024047; scaffold1741 TRF Tandem_Repeat 577247 577343 160 + . . scaffold1741 GLEAN mRNA 577247 577341 0.201236 + . ID=CGI_10024047; scaffold1741 TRF Tandem_Repeat 577247 577341 144 + . . scaffold1741 GLEAN mRNA 578072 578229 0.201236 + . ID=CGI_10024047; scaffold1741 TRF Tandem_Repeat 578072 578229 179 + . . scaffold1741 GLEAN mRNA 578070 578229 0.201236 + . ID=CGI_10024047; scaffold1741 TRF Tandem_Repeat 578070 578229 184 + . . scaffold1741 GLEAN mRNA 587713 587763 0.201236 + . ID=CGI_10024047; scaffold1741 WUBlastX RC_Helitron 587713 587763 22 + . . scaffold1741 GLEAN mRNA 605687 605767 0.201236 + . ID=CGI_10024047; scaffold1741 TRF Tandem_Repeat 605687 605767 74 + . . scaffold1741 GLEAN mRNA 605687 605767 0.201236 + . ID=CGI_10024047; scaffold1741 TRF Tandem_Repeat 605687 605767 74 + . . scaffold1741 GLEAN mRNA 609859 610026 0.201236 + . ID=CGI_10024047; scaffold1741 WUBlastX DNA_IS4EU 609859 610026 29 + . . scaffold1741 GLEAN mRNA 788604 788904 0.999672 + . ID=CGI_10024051; scaffold1741 TRF Tandem_Repeat 788604 788904 449 + . . scaffold1741 GLEAN mRNA 795507 795674 0.999672 + . ID=CGI_10024051; scaffold1741 TRF Tandem_Repeat 795507 795674 264 + . . scaffold1741 GLEAN mRNA 805806 805839 1 - . ID=CGI_10024052; scaffold1741 TRF Tandem_Repeat 805806 805839 68 + . . scaffold1741 GLEAN mRNA 809023 809063 1 - . ID=CGI_10024052; scaffold1741 TRF Tandem_Repeat 809023 809063 64 + . . scaffold1741 GLEAN mRNA 809230 809662 1 - . ID=CGI_10024052; scaffold1741 TRF Tandem_Repeat 809230 809662 473 + . . scaffold1741 GLEAN mRNA 809198 809609 1 - . ID=CGI_10024052; scaffold1741 TRF Tandem_Repeat 809198 809609 531 + . . scaffold1741 GLEAN mRNA 817617 817743 1 - . ID=CGI_10024052; scaffold1741 TRF Tandem_Repeat 817617 817743 105 + . . scaffold1741 GLEAN mRNA 817607 817811 1 - . ID=CGI_10024052; scaffold1741 TRF Tandem_Repeat 817607 817811 331 + . . scaffold1741 GLEAN mRNA 818330 818454 1 - . ID=CGI_10024052; scaffold1741 TRF Tandem_Repeat 818330 818454 94 + . . scaffold1741 GLEAN mRNA 818282 818464 1 - . ID=CGI_10024052; scaffold1741 TRF Tandem_Repeat 818282 818464 133 + . . scaffold1741 GLEAN mRNA 813354 813485 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_Kolobok 813354 813485 28 - . . scaffold1741 GLEAN mRNA 813748 814041 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_Kolobok 813748 814041 104 - . . scaffold1741 GLEAN mRNA 814123 814320 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_Kolobok 814123 814320 117 - . . scaffold1741 GLEAN mRNA 814416 815336 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_Kolobok 814416 815336 230 - . . scaffold1741 GLEAN mRNA 813300 813458 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_Kolobok 813300 813458 98 - . . scaffold1741 GLEAN mRNA 815715 815915 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_IS4EU 815715 815915 91 - . . scaffold1741 GLEAN mRNA 813537 813716 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_Kolobok 813537 813716 77 - . . scaffold1741 GLEAN mRNA 814132 814386 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_Kolobok 814132 814386 51 - . . scaffold1741 GLEAN mRNA 815598 815912 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_P 815598 815912 82 - . . scaffold1741 GLEAN mRNA 812731 812898 1 - . ID=CGI_10024052; scaffold1741 WUBlastX DNA_Kolobok 812731 812898 84 + . . scaffold1741 GLEAN mRNA 830109 830198 1 - . ID=CGI_10024054; scaffold1741 TRF Tandem_Repeat 830109 830198 63 + . . scaffold1741 GLEAN mRNA 835690 835740 0.990852 - . ID=CGI_10024056; scaffold1741 TRF Tandem_Repeat 835690 835740 102 + . . scaffold1741 GLEAN mRNA 837396 837553 0.990852 - . ID=CGI_10024056; scaffold1741 TRF Tandem_Repeat 837396 837553 138 + . . scaffold1741 GLEAN mRNA 837379 837553 0.990852 - . ID=CGI_10024056; scaffold1741 TRF Tandem_Repeat 837379 837553 129 + . . scaffold1741 GLEAN mRNA 858332 858382 0.789234 + . ID=CGI_10024057; scaffold1741 TRF Tandem_Repeat 858332 858382 102 + . . scaffold1741 GLEAN mRNA 893501 893813 0.999501 + . ID=CGI_10024058; scaffold1741 TRF Tandem_Repeat 893501 893813 197 + . . scaffold1741 GLEAN mRNA 893501 893810 0.999501 + . ID=CGI_10024058; scaffold1741 TRF Tandem_Repeat 893501 893810 195 + . . scaffold1741 GLEAN mRNA 893501 893813 0.999501 + . ID=CGI_10024058; scaffold1741 TRF Tandem_Repeat 893501 893813 174 + . . scaffold1741 GLEAN mRNA 893949 894069 0.999501 + . ID=CGI_10024058; scaffold1741 TRF Tandem_Repeat 893949 894069 84 + . . scaffold801 GLEAN mRNA 65466 65639 0.793714 + . ID=CGI_10024060; scaffold801 TRF Tandem_Repeat 65466 65639 289 + . . scaffold801 GLEAN mRNA 70774 70800 0.481021 - . ID=CGI_10024061; scaffold801 TRF Tandem_Repeat 70774 70800 54 + . . scaffold801 GLEAN mRNA 75056 75320 0.481021 - . ID=CGI_10024061; scaffold801 TRF Tandem_Repeat 75056 75320 165 + . . scaffold801 GLEAN mRNA 80805 80879 0.400057 - . ID=CGI_10024062; scaffold801 TRF Tandem_Repeat 80805 80879 150 + . . scaffold801 GLEAN mRNA 84094 84137 0.400057 - . ID=CGI_10024062; scaffold801 TRF Tandem_Repeat 84094 84137 88 + . . scaffold801 GLEAN mRNA 84094 84137 0.889853 + . ID=CGI_10024063; scaffold801 TRF Tandem_Repeat 84094 84137 88 + . . scaffold801 GLEAN mRNA 85642 85729 0.889853 + . ID=CGI_10024063; scaffold801 TRF Tandem_Repeat 85642 85729 99 + . . scaffold801 GLEAN mRNA 87356 87670 0.889853 + . ID=CGI_10024063; scaffold801 WUBlastX DNA_hAT 87356 87670 73 + . . scaffold801 GLEAN mRNA 100723 101522 1 + . ID=CGI_10024064; scaffold801 TRF Tandem_Repeat 100723 101522 1124 + . . scaffold801 GLEAN mRNA 103021 103335 1 + . ID=CGI_10024064; scaffold801 WUBlastX DNA_hAT 103021 103335 77 + . . scaffold801 GLEAN mRNA 109206 109261 0.838493 - . ID=CGI_10024065; scaffold801 TRF Tandem_Repeat 109206 109261 112 + . . scaffold801 GLEAN mRNA 116118 116254 1 + . ID=CGI_10024066; scaffold801 TRF Tandem_Repeat 116118 116254 184 + . . scaffold801 GLEAN mRNA 116357 116430 1 + . ID=CGI_10024066; scaffold801 TRF Tandem_Repeat 116357 116430 148 + . . scaffold801 GLEAN mRNA 125602 125703 1 + . ID=CGI_10024066; scaffold801 TRF Tandem_Repeat 125602 125703 116 + . . scaffold801 GLEAN mRNA 185005 185043 0.951612 + . ID=CGI_10024076; scaffold801 TRF Tandem_Repeat 185005 185043 69 + . . scaffold801 GLEAN mRNA 216742 217040 0.998461 + . ID=CGI_10024078; scaffold801 TRF Tandem_Repeat 216742 217040 508 + . . scaffold801 GLEAN mRNA 238834 238933 0.888236 - . ID=CGI_10024080; scaffold801 TRF Tandem_Repeat 238834 238933 100 + . . scaffold801 GLEAN mRNA 241042 241114 0.888236 - . ID=CGI_10024080; scaffold801 TRF Tandem_Repeat 241042 241114 119 + . . scaffold801 GLEAN mRNA 245022 245269 0.888236 - . ID=CGI_10024080; scaffold801 TRF Tandem_Repeat 245022 245269 202 + . . scaffold801 GLEAN mRNA 267953 267986 0.581073 - . ID=CGI_10024082; scaffold801 TRF Tandem_Repeat 267953 267986 68 + . . scaffold801 GLEAN mRNA 273856 274179 0.581073 - . ID=CGI_10024082; scaffold801 WUBlastX LINE_RTE-X 273856 274179 53 - . . scaffold801 GLEAN mRNA 273713 273856 0.581073 - . ID=CGI_10024082; scaffold801 WUBlastX LINE_RTE-X 273713 273856 36 - . . scaffold801 GLEAN mRNA 274170 274622 0.581073 - . ID=CGI_10024082; scaffold801 WUBlastX LINE_RTE-X 274170 274622 262 - . . scaffold801 GLEAN mRNA 273752 273856 0.581073 - . ID=CGI_10024082; scaffold801 WUBlastX LINE_RTE-X 273752 273856 49 - . . scaffold801 GLEAN mRNA 327541 327940 0.981965 - . ID=CGI_10024085; scaffold801 TRF Tandem_Repeat 327541 327940 586 + . . scaffold801 GLEAN mRNA 388073 388132 0.992668 - . ID=CGI_10024088; scaffold801 TRF Tandem_Repeat 388073 388132 120 + . . scaffold801 GLEAN mRNA 633081 633446 0.460193 - . ID=CGI_10024093; scaffold801 WUBlastX DNA_TcMar-Tc1 633081 633446 133 + . . scaffold801 GLEAN mRNA 638252 638563 0.460193 - . ID=CGI_10024093; scaffold801 WUBlastX LINE_RTE-X 638252 638563 82 + . . scaffold801 GLEAN mRNA 633141 633446 0.460193 - . ID=CGI_10024093; scaffold801 WUBlastX DNA_TcMar-Tc1 633141 633446 164 + . . scaffold801 GLEAN mRNA 638252 638470 0.460193 - . ID=CGI_10024093; scaffold801 WUBlastX LINE_RTE-X 638252 638470 98 + . . scaffold801 GLEAN mRNA 638252 638422 0.460193 - . ID=CGI_10024093; scaffold801 WUBlastX LINE_RTE-X 638252 638422 99 + . . scaffold801 GLEAN mRNA 633027 633287 0.460193 - . ID=CGI_10024093; scaffold801 WUBlastX DNA_TcMar-Marin 633027 633287 31 + . . scaffold801 GLEAN mRNA 683749 683796 1 + . ID=CGI_10024095; scaffold801 TRF Tandem_Repeat 683749 683796 53 + . . scaffold801 GLEAN mRNA 749221 749737 0.702383 + . ID=CGI_10024098; scaffold801 TRF Tandem_Repeat 749221 749737 872 + . . scaffold801 GLEAN mRNA 890963 890996 1 + . ID=CGI_10024100; scaffold801 TRF Tandem_Repeat 890963 890996 59 + . . scaffold1589 GLEAN mRNA 15138 15172 0.999351 + . ID=CGI_10024102; scaffold1589 TRF Tandem_Repeat 15138 15172 70 + . . scaffold1589 GLEAN mRNA 15437 15485 0.999351 + . ID=CGI_10024102; scaffold1589 TRF Tandem_Repeat 15437 15485 75 + . . scaffold1589 GLEAN mRNA 35156 35186 0.999675 - . ID=CGI_10024104; scaffold1589 TRF Tandem_Repeat 35156 35186 62 + . . scaffold1589 GLEAN mRNA 86914 87400 0.681403 + . ID=CGI_10024106; scaffold1589 TRF Tandem_Repeat 86914 87400 681 + . . scaffold1589 GLEAN mRNA 89881 90086 0.681403 + . ID=CGI_10024106; scaffold1589 TRF Tandem_Repeat 89881 90086 335 + . . scaffold1589 GLEAN mRNA 95520 96192 0.681403 + . ID=CGI_10024106; scaffold1589 TRF Tandem_Repeat 95520 96192 672 + . . scaffold1589 GLEAN mRNA 95520 96192 0.681403 + . ID=CGI_10024106; scaffold1589 TRF Tandem_Repeat 95520 96192 1024 + . . scaffold1589 GLEAN mRNA 97571 98448 0.681403 + . ID=CGI_10024106; scaffold1589 TRF Tandem_Repeat 97571 98448 1388 + . . scaffold1589 GLEAN mRNA 97571 98448 0.681403 + . ID=CGI_10024106; scaffold1589 TRF Tandem_Repeat 97571 98448 1382 + . . scaffold1589 GLEAN mRNA 112005 112072 0.668529 + . ID=CGI_10024108; scaffold1589 TRF Tandem_Repeat 112005 112072 136 + . . scaffold1589 GLEAN mRNA 117023 117098 0.668529 + . ID=CGI_10024108; scaffold1589 TRF Tandem_Repeat 117023 117098 152 + . . scaffold1589 GLEAN mRNA 124738 125768 0.668529 + . ID=CGI_10024108; scaffold1589 TRF Tandem_Repeat 124738 125768 1540 + . . scaffold1589 GLEAN mRNA 126680 126721 0.668529 + . ID=CGI_10024108; scaffold1589 TRF Tandem_Repeat 126680 126721 84 + . . scaffold1589 GLEAN mRNA 129042 129221 0.668529 + . ID=CGI_10024108; scaffold1589 TRF Tandem_Repeat 129042 129221 216 + . . scaffold1589 GLEAN mRNA 129042 129221 0.668529 + . ID=CGI_10024108; scaffold1589 TRF Tandem_Repeat 129042 129221 148 + . . scaffold1589 GLEAN mRNA 129817 129903 0.668529 + . ID=CGI_10024108; scaffold1589 TRF Tandem_Repeat 129817 129903 113 + . . scaffold1589 GLEAN mRNA 128562 129008 0.668529 + . ID=CGI_10024108; scaffold1589 WUBlastX LINE_Penelope 128562 129008 79 + . . scaffold1589 GLEAN mRNA 128421 129014 0.668529 + . ID=CGI_10024108; scaffold1589 WUBlastX LINE_Penelope 128421 129014 63 + . . scaffold1589 GLEAN mRNA 131896 131997 0.668529 + . ID=CGI_10024108; scaffold1589 TRF Tandem_Repeat 131896 131997 132 + . . scaffold1589 GLEAN mRNA 131894 132055 0.668529 + . ID=CGI_10024108; scaffold1589 TRF Tandem_Repeat 131894 132055 101 + . . scaffold1589 GLEAN mRNA 132057 132222 0.668529 + . ID=CGI_10024108; scaffold1589 TRF Tandem_Repeat 132057 132222 172 + . . scaffold1589 GLEAN mRNA 283592 285142 0.968345 - . ID=CGI_10024110; scaffold1589 WUBlastX LTR_Gypsy 283592 285142 113 - . . scaffold1589 GLEAN mRNA 284669 285253 0.968345 - . ID=CGI_10024110; scaffold1589 WUBlastX LTR_Gypsy-Cigr 284669 285253 139 - . . scaffold1589 GLEAN mRNA 284600 285136 0.968345 - . ID=CGI_10024110; scaffold1589 WUBlastX LTR_Gypsy-Cigr 284600 285136 147 - . . scaffold1589 GLEAN mRNA 280773 282626 0.968345 - . ID=CGI_10024110; scaffold1589 WUBlastX LTR_Gypsy 280773 282626 1075 - . . scaffold1589 GLEAN mRNA 282617 284251 0.968345 - . ID=CGI_10024110; scaffold1589 WUBlastX LTR_Gypsy-Cigr 282617 284251 888 - . . scaffold1589 GLEAN mRNA 280536 282038 0.968345 - . ID=CGI_10024110; scaffold1589 WUBlastX LTR_Gypsy 280536 282038 464 - . . scaffold1589 GLEAN mRNA 280515 280574 0.968345 - . ID=CGI_10024110; scaffold1589 WUBlastX LTR_Copia 280515 280574 28 - . . scaffold1589 GLEAN mRNA 280111 280314 0.968345 - . ID=CGI_10024110; scaffold1589 WUBlastX LTR_Copia 280111 280314 34 - . . scaffold1589 GLEAN mRNA 309301 309325 0.998727 - . ID=CGI_10024111; scaffold1589 TRF Tandem_Repeat 309301 309325 50 + . . scaffold1589 GLEAN mRNA 311917 312066 0.998727 - . ID=CGI_10024111; scaffold1589 TRF Tandem_Repeat 311917 312066 273 + . . scaffold1589 GLEAN mRNA 324874 324904 0.999922 + . ID=CGI_10024112; scaffold1589 TRF Tandem_Repeat 324874 324904 62 + . . scaffold1589 GLEAN mRNA 334870 335025 0.999676 - . ID=CGI_10024113; scaffold1589 TRF Tandem_Repeat 334870 335025 244 + . . scaffold1589 GLEAN mRNA 340840 340888 0.999676 - . ID=CGI_10024113; scaffold1589 TRF Tandem_Repeat 340840 340888 98 + . . scaffold1589 GLEAN mRNA 342778 343028 0.999676 - . ID=CGI_10024113; scaffold1589 TRF Tandem_Repeat 342778 343028 421 + . . scaffold1589 GLEAN mRNA 345975 346046 0.999676 - . ID=CGI_10024113; scaffold1589 TRF Tandem_Repeat 345975 346046 144 + . . scaffold1589 GLEAN mRNA 346647 346709 0.999676 - . ID=CGI_10024113; scaffold1589 TRF Tandem_Repeat 346647 346709 119 + . . scaffold1589 GLEAN mRNA 351541 351581 0.999676 - . ID=CGI_10024113; scaffold1589 TRF Tandem_Repeat 351541 351581 82 + . . scaffold1589 GLEAN mRNA 352114 352165 0.999676 - . ID=CGI_10024113; scaffold1589 TRF Tandem_Repeat 352114 352165 104 + . . scaffold1589 GLEAN mRNA 360363 360448 0.999977 + . ID=CGI_10024114; scaffold1589 TRF Tandem_Repeat 360363 360448 86 + . . scaffold1589 GLEAN mRNA 388808 388875 0.643157 + . ID=CGI_10024115; scaffold1589 TRF Tandem_Repeat 388808 388875 70 + . . scaffold1589 GLEAN mRNA 380772 381461 0.643157 + . ID=CGI_10024115; scaffold1589 WUBlastX LINE_L1 380772 381461 93 + . . scaffold1589 GLEAN mRNA 379966 380031 0.643157 + . ID=CGI_10024115; scaffold1589 WUBlastX LINE_L1-Tx1 379966 380031 21 + . . scaffold1589 GLEAN mRNA 380546 380629 0.643157 + . ID=CGI_10024115; scaffold1589 WUBlastX LINE_L1 380546 380629 25 + . . scaffold1589 GLEAN mRNA 380628 381257 0.643157 + . ID=CGI_10024115; scaffold1589 WUBlastX LINE_L1-Tx1 380628 381257 301 + . . scaffold1589 GLEAN mRNA 381478 381546 0.643157 + . ID=CGI_10024115; scaffold1589 WUBlastX LINE_L1 381478 381546 22 + . . scaffold1589 GLEAN mRNA 380576 380629 0.643157 + . ID=CGI_10024115; scaffold1589 WUBlastX LINE_L1 380576 380629 27 + . . scaffold1589 GLEAN mRNA 397903 398025 0.722572 - . ID=CGI_10024116; scaffold1589 TRF Tandem_Repeat 397903 398025 69 + . . scaffold1589 GLEAN mRNA 397902 398194 0.722572 - . ID=CGI_10024116; scaffold1589 TRF Tandem_Repeat 397902 398194 496 + . . scaffold1589 GLEAN mRNA 398018 398139 0.722572 - . ID=CGI_10024116; scaffold1589 TRF Tandem_Repeat 398018 398139 76 + . . scaffold1589 GLEAN mRNA 491178 491213 0.999998 - . ID=CGI_10024119; scaffold1589 TRF Tandem_Repeat 491178 491213 63 + . . scaffold1589 GLEAN mRNA 556004 556034 0.999995 + . ID=CGI_10024120; scaffold1589 TRF Tandem_Repeat 556004 556034 53 + . . scaffold1589 GLEAN mRNA 556524 556681 0.999995 + . ID=CGI_10024120; scaffold1589 TRF Tandem_Repeat 556524 556681 201 + . . scaffold1589 GLEAN mRNA 556552 556684 0.999995 + . ID=CGI_10024120; scaffold1589 TRF Tandem_Repeat 556552 556684 91 + . . scaffold1589 GLEAN mRNA 556528 556686 0.999995 + . ID=CGI_10024120; scaffold1589 TRF Tandem_Repeat 556528 556686 237 + . . scaffold1589 GLEAN mRNA 556528 556686 0.999995 + . ID=CGI_10024120; scaffold1589 TRF Tandem_Repeat 556528 556686 183 + . . scaffold1589 GLEAN mRNA 559860 559917 0.999995 + . ID=CGI_10024120; scaffold1589 TRF Tandem_Repeat 559860 559917 116 + . . scaffold1589 GLEAN mRNA 566754 566834 0.999995 + . ID=CGI_10024120; scaffold1589 TRF Tandem_Repeat 566754 566834 153 + . . scaffold1589 GLEAN mRNA 568510 569113 0.999995 + . ID=CGI_10024120; scaffold1589 TRF Tandem_Repeat 568510 569113 778 + . . scaffold1589 GLEAN mRNA 570626 570663 0.999995 + . ID=CGI_10024120; scaffold1589 TRF Tandem_Repeat 570626 570663 76 + . . scaffold1589 GLEAN mRNA 594962 595057 0.965132 - . ID=CGI_10024122; scaffold1589 WUBlastX LTR_Gypsy-Cigr 594962 595057 51 + . . scaffold1589 GLEAN mRNA 593825 595015 0.965132 - . ID=CGI_10024122; scaffold1589 WUBlastX LTR_Gypsy 593825 595015 961 + . . scaffold1589 GLEAN mRNA 595315 595395 0.965132 - . ID=CGI_10024122; scaffold1589 WUBlastX LTR_Copia 595315 595395 26 + . . scaffold1589 GLEAN mRNA 594935 595033 0.965132 - . ID=CGI_10024122; scaffold1589 WUBlastX LTR_Gypsy-Cigr 594935 595033 51 + . . scaffold1589 GLEAN mRNA 593760 593903 0.965132 - . ID=CGI_10024122; scaffold1589 WUBlastX LTR_Copia 593760 593903 23 + . . scaffold1589 GLEAN mRNA 615610 615650 0.999607 + . ID=CGI_10024124; scaffold1589 TRF Tandem_Repeat 615610 615650 82 + . . scaffold1589 GLEAN mRNA 633929 633979 0.924857 - . ID=CGI_10024125; scaffold1589 TRF Tandem_Repeat 633929 633979 102 + . . scaffold1589 GLEAN mRNA 771909 772042 0.516431 + . ID=CGI_10024129; scaffold1589 TRF Tandem_Repeat 771909 772042 83 + . . scaffold1589 GLEAN mRNA 773031 773147 0.516431 + . ID=CGI_10024129; scaffold1589 TRF Tandem_Repeat 773031 773147 100 + . . scaffold1589 GLEAN mRNA 778082 778129 0.516431 + . ID=CGI_10024129; scaffold1589 TRF Tandem_Repeat 778082 778129 96 + . . scaffold1589 GLEAN mRNA 780585 780614 0.516431 + . ID=CGI_10024129; scaffold1589 TRF Tandem_Repeat 780585 780614 60 + . . scaffold1589 GLEAN mRNA 780868 780906 0.516431 + . ID=CGI_10024129; scaffold1589 TRF Tandem_Repeat 780868 780906 69 + . . scaffold1589 GLEAN mRNA 781747 781814 0.516431 + . ID=CGI_10024129; scaffold1589 TRF Tandem_Repeat 781747 781814 136 + . . scaffold1589 GLEAN mRNA 782729 782760 0.516431 + . ID=CGI_10024129; scaffold1589 TRF Tandem_Repeat 782729 782760 64 + . . scaffold1589 GLEAN mRNA 882015 882254 0.863209 - . ID=CGI_10024131; scaffold1589 WUBlastX LINE_CR1-L2 882015 882254 32 + . . scaffold485 GLEAN mRNA 579 655 0.650997 - . ID=CGI_10024133; scaffold485 TRF Tandem_Repeat 579 655 57 + . . scaffold485 GLEAN mRNA 581 647 0.650997 - . ID=CGI_10024133; scaffold485 TRF Tandem_Repeat 581 647 66 + . . scaffold485 GLEAN mRNA 583 655 0.650997 - . ID=CGI_10024133; scaffold485 TRF Tandem_Repeat 583 655 56 + . . scaffold485 GLEAN mRNA 4435 4474 0.650997 - . ID=CGI_10024133; scaffold485 TRF Tandem_Repeat 4435 4474 55 + . . scaffold485 GLEAN mRNA 9720 9758 0.650997 - . ID=CGI_10024133; scaffold485 TRF Tandem_Repeat 9720 9758 60 + . . scaffold485 GLEAN mRNA 15806 15847 0.650997 - . ID=CGI_10024133; scaffold485 TRF Tandem_Repeat 15806 15847 70 + . . scaffold485 GLEAN mRNA 36955 36979 0.753552 + . ID=CGI_10024135; scaffold485 TRF Tandem_Repeat 36955 36979 50 + . . scaffold485 GLEAN mRNA 37807 37856 0.753552 + . ID=CGI_10024135; scaffold485 TRF Tandem_Repeat 37807 37856 100 + . . scaffold485 GLEAN mRNA 40269 40323 0.753552 + . ID=CGI_10024135; scaffold485 TRF Tandem_Repeat 40269 40323 110 + . . scaffold485 GLEAN mRNA 62582 63120 1 - . ID=CGI_10024137; scaffold485 TRF Tandem_Repeat 62582 63120 724 + . . scaffold485 GLEAN mRNA 84678 84729 0.481962 + . ID=CGI_10024139; scaffold485 TRF Tandem_Repeat 84678 84729 104 + . . scaffold485 GLEAN mRNA 96029 96056 0.621158 + . ID=CGI_10024142; scaffold485 TRF Tandem_Repeat 96029 96056 56 + . . scaffold485 GLEAN mRNA 96879 96988 0.621158 + . ID=CGI_10024142; scaffold485 TRF Tandem_Repeat 96879 96988 168 + . . scaffold485 GLEAN mRNA 112240 112282 1 - . ID=CGI_10024143; scaffold485 TRF Tandem_Repeat 112240 112282 63 + . . scaffold485 GLEAN mRNA 121678 123159 1 - . ID=CGI_10024145; scaffold485 WUBlastX DNA_hAT 121678 123216 274 - . . scaffold485 GLEAN mRNA 244199 244307 0.660447 + . ID=CGI_10024152; scaffold485 TRF Tandem_Repeat 244199 244307 164 + . . scaffold485 GLEAN mRNA 244199 244337 0.660447 + . ID=CGI_10024152; scaffold485 TRF Tandem_Repeat 244199 244337 194 + . . scaffold485 GLEAN mRNA 244198 244337 0.660447 + . ID=CGI_10024152; scaffold485 TRF Tandem_Repeat 244198 244337 191 + . . scaffold485 GLEAN mRNA 245170 245254 0.660447 + . ID=CGI_10024152; scaffold485 TRF Tandem_Repeat 245170 245254 149 + . . scaffold485 GLEAN mRNA 254276 254302 0.660447 + . ID=CGI_10024152; scaffold485 TRF Tandem_Repeat 254276 254302 54 + . . scaffold485 GLEAN mRNA 286640 286676 0.883286 + . ID=CGI_10024155; scaffold485 TRF Tandem_Repeat 286640 286676 74 + . . scaffold485 GLEAN mRNA 288869 288912 0.883286 + . ID=CGI_10024155; scaffold485 TRF Tandem_Repeat 288869 288912 88 + . . scaffold485 GLEAN mRNA 289292 290146 0.883286 + . ID=CGI_10024155; scaffold485 WUBlastX LINE_L1 289292 290146 24 + . . scaffold485 GLEAN mRNA 289118 289696 0.883286 + . ID=CGI_10024155; scaffold485 WUBlastX LTR_Gypsy 289118 289696 31 + . . scaffold485 GLEAN mRNA 338294 339389 0.841405 + . ID=CGI_10024157; scaffold485 TRF Tandem_Repeat 338294 339389 1626 + . . scaffold485 GLEAN mRNA 358511 358668 1 - . ID=CGI_10024158; scaffold485 TRF Tandem_Repeat 358511 358668 84 + . . scaffold485 GLEAN mRNA 384248 384283 1 + . ID=CGI_10024162; scaffold485 TRF Tandem_Repeat 384248 384283 72 + . . scaffold485 GLEAN mRNA 472428 472458 1 - . ID=CGI_10024167; scaffold485 TRF Tandem_Repeat 472428 472458 62 + . . scaffold485 GLEAN mRNA 480722 480777 1 - . ID=CGI_10024168; scaffold485 TRF Tandem_Repeat 480722 480777 73 + . . scaffold485 GLEAN mRNA 485039 485959 1 + . ID=CGI_10024169; scaffold485 TRF Tandem_Repeat 485039 485959 1276 + . . scaffold485 GLEAN mRNA 487175 487203 1 + . ID=CGI_10024169; scaffold485 TRF Tandem_Repeat 487175 487203 58 + . . scaffold485 GLEAN mRNA 496340 496384 1 + . ID=CGI_10024170; scaffold485 TRF Tandem_Repeat 496340 496384 90 + . . scaffold485 GLEAN mRNA 505381 505756 1 + . ID=CGI_10024170; scaffold485 TRF Tandem_Repeat 505381 505756 689 + . . scaffold485 GLEAN mRNA 519173 519220 1 + . ID=CGI_10024172; scaffold485 TRF Tandem_Repeat 519173 519220 60 + . . scaffold485 GLEAN mRNA 519441 519502 1 + . ID=CGI_10024172; scaffold485 TRF Tandem_Repeat 519441 519502 124 + . . scaffold485 GLEAN mRNA 542895 543083 0.999981 + . ID=CGI_10024175; scaffold485 TRF Tandem_Repeat 542895 543083 344 + . . scaffold485 GLEAN mRNA 554979 555011 0.999644 - . ID=CGI_10024177; scaffold485 TRF Tandem_Repeat 554979 555011 66 + . . scaffold485 GLEAN mRNA 555383 555602 0.999644 - . ID=CGI_10024177; scaffold485 TRF Tandem_Repeat 555383 555602 368 + . . scaffold485 GLEAN mRNA 556367 556526 0.999644 - . ID=CGI_10024177; scaffold485 TRF Tandem_Repeat 556367 556526 67 + . . scaffold485 GLEAN mRNA 560447 560482 0.98933 - . ID=CGI_10024178; scaffold485 TRF Tandem_Repeat 560447 560482 72 + . . scaffold485 GLEAN mRNA 584158 584202 0.949459 - . ID=CGI_10024180; scaffold485 TRF Tandem_Repeat 584158 584202 81 + . . scaffold485 GLEAN mRNA 652542 652894 0.998245 + . ID=CGI_10024186; scaffold485 TRF Tandem_Repeat 652542 652894 499 + . . scaffold485 GLEAN mRNA 667925 667953 0.777485 - . ID=CGI_10024187; scaffold485 TRF Tandem_Repeat 667925 667953 58 + . . scaffold485 GLEAN mRNA 742325 743835 1 - . ID=CGI_10024191; scaffold485 TRF Tandem_Repeat 742325 743835 1651 + . . scaffold485 GLEAN mRNA 738980 739498 1 - . ID=CGI_10024191; scaffold485 WUBlastX LINE_RTE-BovB 738980 739498 227 + . . scaffold485 GLEAN mRNA 738428 739498 1 - . ID=CGI_10024191; scaffold485 WUBlastX LINE_RTE-BovB 738428 739498 122 + . . scaffold485 GLEAN mRNA 738404 738544 1 - . ID=CGI_10024191; scaffold485 WUBlastX LINE_RTE-BovB 738404 738544 50 + . . scaffold485 GLEAN mRNA 742325 743835 0.981296 + . ID=CGI_10024192; scaffold485 TRF Tandem_Repeat 742325 743835 1651 + . . scaffold485 GLEAN mRNA 738980 739498 0.981296 + . ID=CGI_10024192; scaffold485 WUBlastX LINE_RTE-BovB 738980 739498 227 + . . scaffold485 GLEAN mRNA 738428 739498 0.981296 + . ID=CGI_10024192; scaffold485 WUBlastX LINE_RTE-BovB 738428 739498 122 + . . scaffold485 GLEAN mRNA 738404 738544 0.981296 + . ID=CGI_10024192; scaffold485 WUBlastX LINE_RTE-BovB 738404 738544 50 + . . scaffold485 GLEAN mRNA 771238 771286 0.996819 + . ID=CGI_10024194; scaffold485 TRF Tandem_Repeat 771238 771286 98 + . . scaffold485 GLEAN mRNA 826770 826895 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 826770 826895 49 + . . scaffold485 GLEAN mRNA 830084 830266 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 830084 830266 55 - . . scaffold485 GLEAN mRNA 828906 829094 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 828906 829094 94 - . . scaffold485 GLEAN mRNA 829055 829798 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 829055 829798 347 - . . scaffold485 GLEAN mRNA 830177 830446 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 830177 830446 58 - . . scaffold485 GLEAN mRNA 826803 826976 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 826803 826976 94 + . . scaffold485 GLEAN mRNA 825441 825587 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 825441 825587 52 + . . scaffold485 GLEAN mRNA 826121 826444 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 826121 826444 118 + . . scaffold392 GLEAN mRNA 22341 22478 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 22341 22478 93 + . . scaffold392 GLEAN mRNA 22370 22479 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 22370 22479 112 + . . scaffold392 GLEAN mRNA 39125 39186 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 39125 39186 90 + . . scaffold392 GLEAN mRNA 40648 40701 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 40648 40701 99 + . . scaffold392 GLEAN mRNA 45272 45315 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 45272 45315 88 + . . scaffold392 GLEAN mRNA 36173 36241 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy 36173 36241 30 - . . scaffold392 GLEAN mRNA 38338 38520 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy 38338 38520 50 - . . scaffold392 GLEAN mRNA 37918 38169 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy 37918 38169 65 - . . scaffold392 GLEAN mRNA 35306 35866 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy 35306 35866 78 - . . scaffold392 GLEAN mRNA 35878 36018 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy 35878 36018 82 - . . scaffold392 GLEAN mRNA 46393 46623 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX DNA_Kolobok 46393 46623 25 + . . scaffold392 GLEAN mRNA 35561 35860 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy-Cigr 35561 35860 92 - . . scaffold392 GLEAN mRNA 46125 46229 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX DNA_Kolobok 46125 46229 24 + . . scaffold392 GLEAN mRNA 46396 46590 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX DNA_Kolobok 46396 46590 28 + . . scaffold392 GLEAN mRNA 38338 38472 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy 38338 38472 96 - . . scaffold392 GLEAN mRNA 37921 38124 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy-Cigr 37921 38124 83 - . . scaffold392 GLEAN mRNA 38338 38574 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy 38338 38574 24 - . . scaffold392 GLEAN mRNA 36015 36191 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy 36015 36191 64 - . . scaffold392 GLEAN mRNA 37975 38286 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy 37975 38286 22 - . . scaffold392 GLEAN mRNA 36015 36407 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy 36015 36407 21 - . . scaffold392 GLEAN mRNA 36024 36317 0.576401 + . ID=CGI_10024202; scaffold392 WUBlastX LTR_Gypsy 36024 36317 25 - . . scaffold392 GLEAN mRNA 50052 50129 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 50052 50129 156 + . . scaffold392 GLEAN mRNA 53504 53559 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 53504 53559 58 + . . scaffold392 GLEAN mRNA 64413 64473 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 64413 64473 50 + . . scaffold392 GLEAN mRNA 64413 64528 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 64413 64528 53 + . . scaffold392 GLEAN mRNA 65712 65756 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 65712 65756 67 + . . scaffold392 GLEAN mRNA 66663 66703 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 66663 66703 82 + . . scaffold392 GLEAN mRNA 67201 67384 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 67201 67384 98 + . . scaffold392 GLEAN mRNA 67284 67374 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 67284 67374 91 + . . scaffold392 GLEAN mRNA 67360 67420 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 67360 67420 50 + . . scaffold392 GLEAN mRNA 89236 89608 0.733296 - . ID=CGI_10024203; scaffold392 TRF Tandem_Repeat 89236 89608 376 + . . scaffold392 GLEAN mRNA 89617 89760 0.733296 - . ID=CGI_10024203; scaffold392 WUBlastX LTR_Copia 89617 89760 22 - . . scaffold392 GLEAN mRNA 176274 176327 0.999978 + . ID=CGI_10024204; scaffold392 TRF Tandem_Repeat 176274 176327 108 + . . scaffold392 GLEAN mRNA 179196 179241 0.999978 + . ID=CGI_10024204; scaffold392 TRF Tandem_Repeat 179196 179241 83 + . . scaffold392 GLEAN mRNA 179324 179640 0.999978 + . ID=CGI_10024204; scaffold392 TRF Tandem_Repeat 179324 179640 114 + . . scaffold392 GLEAN mRNA 261588 261901 0.607341 + . ID=CGI_10024210; scaffold392 TRF Tandem_Repeat 261588 261901 458 + . . scaffold392 GLEAN mRNA 321292 321352 0.927069 - . ID=CGI_10024211; scaffold392 TRF Tandem_Repeat 321292 321352 122 + . . scaffold392 GLEAN mRNA 341965 342178 0.54474 + . ID=CGI_10024214; scaffold392 WUBlastX LINE_RTE-X 341965 342345 57 - . . scaffold392 GLEAN mRNA 422645 422854 0.701545 + . ID=CGI_10024216; scaffold392 WUBlastX LINE_L2 422645 422854 64 + . . scaffold392 GLEAN mRNA 450453 452798 0.44936 + . ID=CGI_10024218; scaffold392 WUBlastX LINE_RTE-X 450453 452798 669 - . . scaffold392 GLEAN mRNA 444509 445024 0.44936 + . ID=CGI_10024218; scaffold392 WUBlastX LINE_L2 444509 445024 175 + . . scaffold392 GLEAN mRNA 448886 450448 0.44936 + . ID=CGI_10024218; scaffold392 WUBlastX LINE_RTE-BovB 448886 450448 269 - . . scaffold392 GLEAN mRNA 448312 448623 0.44936 + . ID=CGI_10024218; scaffold392 WUBlastX LINE_RTE-X 448312 448623 70 - . . scaffold392 GLEAN mRNA 448189 448626 0.44936 + . ID=CGI_10024218; scaffold392 WUBlastX LINE_RTE-X 448189 448626 45 - . . scaffold392 GLEAN mRNA 448661 450142 0.44936 + . ID=CGI_10024218; scaffold392 WUBlastX LINE_RTE-X 448661 450142 657 - . . scaffold392 GLEAN mRNA 444383 444880 0.44936 + . ID=CGI_10024218; scaffold392 WUBlastX LINE_L1 444383 444880 30 + . . scaffold392 GLEAN mRNA 483510 483546 0.999851 - . ID=CGI_10024220; scaffold392 TRF Tandem_Repeat 483510 483546 56 + . . scaffold392 GLEAN mRNA 485824 485857 0.999851 - . ID=CGI_10024220; scaffold392 TRF Tandem_Repeat 485824 485857 50 + . . scaffold392 GLEAN mRNA 494642 494698 0.999851 - . ID=CGI_10024220; scaffold392 TRF Tandem_Repeat 494642 494698 114 + . . scaffold392 GLEAN mRNA 494890 494953 0.999851 - . ID=CGI_10024220; scaffold392 TRF Tandem_Repeat 494890 494953 65 + . . scaffold392 GLEAN mRNA 509663 510157 0.542609 + . ID=CGI_10024222; scaffold392 WUBlastX LINE_L2 509663 510157 75 - . . scaffold392 GLEAN mRNA 529527 529590 0.542609 + . ID=CGI_10024222; scaffold392 TRF Tandem_Repeat 529527 529590 128 + . . scaffold392 GLEAN mRNA 542458 542529 1 - . ID=CGI_10024223; scaffold392 TRF Tandem_Repeat 542458 542529 71 + . . scaffold392 GLEAN mRNA 548547 548585 1 - . ID=CGI_10024223; scaffold392 TRF Tandem_Repeat 548547 548585 51 + . . scaffold392 GLEAN mRNA 550848 550876 1 - . ID=CGI_10024223; scaffold392 TRF Tandem_Repeat 550848 550876 58 + . . scaffold392 GLEAN mRNA 558869 558913 1 - . ID=CGI_10024223; scaffold392 TRF Tandem_Repeat 558869 558913 90 + . . scaffold392 GLEAN mRNA 560978 561024 1 - . ID=CGI_10024223; scaffold392 TRF Tandem_Repeat 560978 561024 76 + . . scaffold392 GLEAN mRNA 561068 561120 1 - . ID=CGI_10024223; scaffold392 TRF Tandem_Repeat 561068 561120 106 + . . scaffold392 GLEAN mRNA 561164 561208 1 - . ID=CGI_10024223; scaffold392 TRF Tandem_Repeat 561164 561208 90 + . . scaffold392 GLEAN mRNA 561420 561444 1 - . ID=CGI_10024223; scaffold392 TRF Tandem_Repeat 561420 561444 50 + . . scaffold392 GLEAN mRNA 570416 570529 0.974514 - . ID=CGI_10024224; scaffold392 TRF Tandem_Repeat 570416 570529 149 + . . scaffold392 GLEAN mRNA 576664 576703 0.974514 - . ID=CGI_10024224; scaffold392 TRF Tandem_Repeat 576664 576703 71 + . . scaffold392 GLEAN mRNA 577699 577927 0.974514 - . ID=CGI_10024224; scaffold392 TRF Tandem_Repeat 577699 577927 278 + . . scaffold392 GLEAN mRNA 580381 580413 0.974514 - . ID=CGI_10024224; scaffold392 TRF Tandem_Repeat 580381 580413 66 + . . scaffold392 GLEAN mRNA 623982 624034 0.889923 - . ID=CGI_10024226; scaffold392 TRF Tandem_Repeat 623982 624034 52 + . . scaffold392 GLEAN mRNA 658172 658257 0.830987 + . ID=CGI_10024228; scaffold392 TRF Tandem_Repeat 658172 658257 54 + . . scaffold392 GLEAN mRNA 723506 723570 0.651135 - . ID=CGI_10024233; scaffold392 TRF Tandem_Repeat 723506 723570 94 + . . scaffold392 GLEAN mRNA 745081 746081 1 - . ID=CGI_10024235; scaffold392 TRF Tandem_Repeat 745081 746081 1541 + . . scaffold392 GLEAN mRNA 786602 786888 0.791625 - . ID=CGI_10024236; scaffold392 TRF Tandem_Repeat 786602 786888 360 + . . scaffold392 GLEAN mRNA 791044 791138 0.791625 - . ID=CGI_10024236; scaffold392 TRF Tandem_Repeat 791044 791138 95 + . . scaffold392 GLEAN mRNA 791220 791313 0.791625 - . ID=CGI_10024236; scaffold392 TRF Tandem_Repeat 791220 791313 118 + . . scaffold392 GLEAN mRNA 788990 789265 0.791625 - . ID=CGI_10024236; scaffold392 WUBlastX LINE_CR1-L2 788990 789265 67 + . . scaffold392 GLEAN mRNA 789259 789372 0.791625 - . ID=CGI_10024236; scaffold392 WUBlastX LINE_CR1-L2 789259 789372 26 + . . scaffold392 GLEAN mRNA 788996 789214 0.791625 - . ID=CGI_10024236; scaffold392 WUBlastX LINE_CR1-L2 788996 789214 96 + . . scaffold392 GLEAN mRNA 823583 823613 0.925161 - . ID=CGI_10024237; scaffold392 TRF Tandem_Repeat 823583 823613 62 + . . scaffold392 GLEAN mRNA 895732 896061 1 + . ID=CGI_10024238; scaffold392 WUBlastX DNA_Kolobok 895732 896061 94 + . . scaffold392 GLEAN mRNA 895627 896070 1 + . ID=CGI_10024238; scaffold392 WUBlastX DNA_Kolobok 895627 896070 30 + . . scaffold392 GLEAN mRNA 898814 898862 0.782453 - . ID=CGI_10024239; scaffold392 TRF Tandem_Repeat 898814 898862 98 + . . scaffold392 GLEAN mRNA 896393 896731 0.782453 - . ID=CGI_10024239; scaffold392 WUBlastX DNA_Kolobok 896393 896731 87 - . . scaffold392 GLEAN mRNA 896988 897230 0.782453 - . ID=CGI_10024239; scaffold392 WUBlastX DNA_Kolobok 896988 897230 111 - . . scaffold392 GLEAN mRNA 897361 897576 0.782453 - . ID=CGI_10024239; scaffold392 WUBlastX DNA_Kolobok 897361 897576 44 - . . scaffold392 GLEAN mRNA 898023 898208 0.782453 - . ID=CGI_10024239; scaffold392 WUBlastX DNA_Kolobok 898023 898208 46 - . . scaffold392 GLEAN mRNA 898456 898650 0.782453 - . ID=CGI_10024239; scaffold392 WUBlastX DNA_Kolobok 898456 898650 35 - . . scaffold1219 GLEAN mRNA 4966 5589 0.994167 + . ID=CGI_10024240; scaffold1219 TRF Tandem_Repeat 4966 5589 764 + . . scaffold1219 GLEAN mRNA 20329 20577 1 + . ID=CGI_10024241; scaffold1219 TRF Tandem_Repeat 20329 20577 417 + . . scaffold1219 GLEAN mRNA 29160 29283 1 + . ID=CGI_10024242; scaffold1219 TRF Tandem_Repeat 29160 29283 57 + . . scaffold1219 GLEAN mRNA 29174 29315 1 + . ID=CGI_10024242; scaffold1219 TRF Tandem_Repeat 29174 29315 142 + . . scaffold1219 GLEAN mRNA 60036 60080 0.956539 + . ID=CGI_10024245; scaffold1219 TRF Tandem_Repeat 60036 60080 90 + . . scaffold1219 GLEAN mRNA 61147 61188 0.956539 + . ID=CGI_10024245; scaffold1219 TRF Tandem_Repeat 61147 61188 84 + . . scaffold1219 GLEAN mRNA 68030 68376 0.956539 + . ID=CGI_10024245; scaffold1219 TRF Tandem_Repeat 68030 68376 480 + . . scaffold1219 GLEAN mRNA 70953 71745 0.956539 + . ID=CGI_10024245; scaffold1219 TRF Tandem_Repeat 70953 71745 950 + . . scaffold1219 GLEAN mRNA 74181 74214 0.956539 + . ID=CGI_10024245; scaffold1219 TRF Tandem_Repeat 74181 74214 59 + . . scaffold1219 GLEAN mRNA 76224 76435 0.956539 + . ID=CGI_10024245; scaffold1219 TRF Tandem_Repeat 76224 76435 110 + . . scaffold1219 GLEAN mRNA 80496 80983 0.956539 + . ID=CGI_10024245; scaffold1219 TRF Tandem_Repeat 80496 80983 615 + . . scaffold1219 GLEAN mRNA 81110 81218 0.956539 + . ID=CGI_10024245; scaffold1219 TRF Tandem_Repeat 81110 81218 71 + . . scaffold1219 GLEAN mRNA 81110 81200 0.956539 + . ID=CGI_10024245; scaffold1219 TRF Tandem_Repeat 81110 81200 85 + . . scaffold1219 GLEAN mRNA 81111 81205 0.956539 + . ID=CGI_10024245; scaffold1219 TRF Tandem_Repeat 81111 81205 111 + . . scaffold1219 GLEAN mRNA 139431 139655 0.415978 + . ID=CGI_10024248; scaffold1219 TRF Tandem_Repeat 139431 139655 243 + . . scaffold1219 GLEAN mRNA 139429 139639 0.415978 + . ID=CGI_10024248; scaffold1219 TRF Tandem_Repeat 139429 139639 298 + . . scaffold1219 GLEAN mRNA 144096 144223 0.415978 + . ID=CGI_10024248; scaffold1219 TRF Tandem_Repeat 144096 144223 88 + . . scaffold1219 GLEAN mRNA 178543 178982 0.999883 - . ID=CGI_10024253; scaffold1219 TRF Tandem_Repeat 178543 178982 601 + . . scaffold1219 GLEAN mRNA 178518 178984 0.999883 - . ID=CGI_10024253; scaffold1219 TRF Tandem_Repeat 178518 178984 642 + . . scaffold1219 GLEAN mRNA 179919 180135 0.999883 - . ID=CGI_10024253; scaffold1219 TRF Tandem_Repeat 179919 180135 312 + . . scaffold1219 GLEAN mRNA 197219 197533 1 - . ID=CGI_10024255; scaffold1219 TRF Tandem_Repeat 197219 197533 560 + . . scaffold1219 GLEAN mRNA 208063 208211 0.810953 - . ID=CGI_10024257; scaffold1219 TRF Tandem_Repeat 208063 208211 90 + . . scaffold1219 GLEAN mRNA 209625 209656 0.810953 - . ID=CGI_10024257; scaffold1219 TRF Tandem_Repeat 209625 209656 55 + . . scaffold1219 GLEAN mRNA 217867 218218 1 - . ID=CGI_10024258; scaffold1219 TRF Tandem_Repeat 217867 218218 542 + . . scaffold1219 GLEAN mRNA 221283 221689 1 - . ID=CGI_10024258; scaffold1219 TRF Tandem_Repeat 221283 221689 742 + . . scaffold1219 GLEAN mRNA 331969 332320 0.874302 - . ID=CGI_10024264; scaffold1219 TRF Tandem_Repeat 331969 332320 550 + . . scaffold1219 GLEAN mRNA 332883 333106 0.874302 - . ID=CGI_10024264; scaffold1219 TRF Tandem_Repeat 332883 333106 193 + . . scaffold1219 GLEAN mRNA 332691 334114 0.874302 - . ID=CGI_10024264; scaffold1219 TRF Tandem_Repeat 332691 334114 461 + . . scaffold1219 GLEAN mRNA 333307 333396 0.874302 - . ID=CGI_10024264; scaffold1219 TRF Tandem_Repeat 333307 333396 63 + . . scaffold1219 GLEAN mRNA 333762 333898 0.874302 - . ID=CGI_10024264; scaffold1219 TRF Tandem_Repeat 333762 333898 116 + . . scaffold1219 GLEAN mRNA 332428 333918 0.874302 - . ID=CGI_10024264; scaffold1219 TRF Tandem_Repeat 332428 333918 161 + . . scaffold1219 GLEAN mRNA 334002 334127 0.874302 - . ID=CGI_10024264; scaffold1219 TRF Tandem_Repeat 334002 334127 148 + . . scaffold1219 GLEAN mRNA 331969 332320 0.999998 + . ID=CGI_10024265; scaffold1219 TRF Tandem_Repeat 331969 332320 550 + . . scaffold1219 GLEAN mRNA 332883 333106 0.999998 + . ID=CGI_10024265; scaffold1219 TRF Tandem_Repeat 332883 333106 193 + . . scaffold1219 GLEAN mRNA 332691 334114 0.999998 + . ID=CGI_10024265; scaffold1219 TRF Tandem_Repeat 332691 334114 461 + . . scaffold1219 GLEAN mRNA 333307 333396 0.999998 + . ID=CGI_10024265; scaffold1219 TRF Tandem_Repeat 333307 333396 63 + . . scaffold1219 GLEAN mRNA 333762 333898 0.999998 + . ID=CGI_10024265; scaffold1219 TRF Tandem_Repeat 333762 333898 116 + . . scaffold1219 GLEAN mRNA 332428 333918 0.999998 + . ID=CGI_10024265; scaffold1219 TRF Tandem_Repeat 332428 333918 161 + . . scaffold1219 GLEAN mRNA 334002 334127 0.999998 + . ID=CGI_10024265; scaffold1219 TRF Tandem_Repeat 334002 334127 148 + . . scaffold1219 GLEAN mRNA 368914 369129 0.8139 + . ID=CGI_10024267; scaffold1219 TRF Tandem_Repeat 368914 369129 405 + . . scaffold1219 GLEAN mRNA 370195 370992 0.8139 + . ID=CGI_10024267; scaffold1219 TRF Tandem_Repeat 370195 370992 1272 + . . scaffold1219 GLEAN mRNA 371988 372024 0.8139 + . ID=CGI_10024267; scaffold1219 TRF Tandem_Repeat 371988 372024 65 + . . scaffold1219 GLEAN mRNA 373405 373452 0.8139 + . ID=CGI_10024267; scaffold1219 TRF Tandem_Repeat 373405 373452 69 + . . scaffold1219 GLEAN mRNA 438778 438816 1 + . ID=CGI_10024274; scaffold1219 TRF Tandem_Repeat 438778 438816 78 + . . scaffold1219 GLEAN mRNA 462143 469012 0.999675 - . ID=CGI_10024277; scaffold1219 TRF Tandem_Repeat 462143 469012 6281 + . . scaffold1219 GLEAN mRNA 477292 477477 1 + . ID=CGI_10024278; scaffold1219 TRF Tandem_Repeat 477292 477477 192 + . . scaffold1219 GLEAN mRNA 477373 477512 1 + . ID=CGI_10024278; scaffold1219 TRF Tandem_Repeat 477373 477512 95 + . . scaffold1219 GLEAN mRNA 511161 511400 0.457472 + . ID=CGI_10024280; scaffold1219 TRF Tandem_Repeat 511161 511400 128 + . . scaffold1219 GLEAN mRNA 527691 528709 0.527402 - . ID=CGI_10024281; scaffold1219 TRF Tandem_Repeat 527691 528709 1203 + . . scaffold1219 GLEAN mRNA 528882 528949 0.527402 - . ID=CGI_10024281; scaffold1219 TRF Tandem_Repeat 528882 528949 64 + . . scaffold1219 GLEAN mRNA 528879 528957 0.527402 - . ID=CGI_10024281; scaffold1219 TRF Tandem_Repeat 528879 528957 104 + . . scaffold1219 GLEAN mRNA 534227 534296 0.998954 - . ID=CGI_10024282; scaffold1219 TRF Tandem_Repeat 534227 534296 140 + . . scaffold1219 GLEAN mRNA 538347 539787 0.999676 - . ID=CGI_10024283; scaffold1219 TRF Tandem_Repeat 538347 539787 1888 + . . scaffold1219 GLEAN mRNA 575631 575672 0.744896 - . ID=CGI_10024286; scaffold1219 TRF Tandem_Repeat 575631 575672 59 + . . scaffold1219 GLEAN mRNA 581505 581927 0.744896 - . ID=CGI_10024286; scaffold1219 WUBlastX LINE_RTE-X 581505 581927 122 - . . scaffold1219 GLEAN mRNA 581388 581936 0.744896 - . ID=CGI_10024286; scaffold1219 WUBlastX LINE_RTE-X 581388 581936 69 - . . scaffold1219 GLEAN mRNA 599795 599831 0.744896 - . ID=CGI_10024286; scaffold1219 TRF Tandem_Repeat 599795 599831 74 + . . scaffold1219 GLEAN mRNA 602622 602665 0.744896 - . ID=CGI_10024286; scaffold1219 TRF Tandem_Repeat 602622 602665 52 + . . scaffold1219 GLEAN mRNA 607833 607939 0.744896 - . ID=CGI_10024286; scaffold1219 TRF Tandem_Repeat 607833 607939 168 + . . scaffold1219 GLEAN mRNA 609019 609193 0.744896 - . ID=CGI_10024286; scaffold1219 TRF Tandem_Repeat 609019 609193 323 + . . scaffold1219 GLEAN mRNA 618177 618968 0.744896 - . ID=CGI_10024286; scaffold1219 WUBlastX LTR_Gypsy 618177 618968 66 - . . scaffold1219 GLEAN mRNA 615345 616181 0.744896 - . ID=CGI_10024286; scaffold1219 WUBlastX LTR_DIRS 615345 616181 609 - . . scaffold1219 GLEAN mRNA 616154 617539 0.744896 - . ID=CGI_10024286; scaffold1219 WUBlastX LTR_DIRS 616154 617539 1207 - . . scaffold1219 GLEAN mRNA 618342 618959 0.744896 - . ID=CGI_10024286; scaffold1219 WUBlastX LTR_DIRS 618342 618959 513 - . . scaffold1219 GLEAN mRNA 575631 575672 1 + . ID=CGI_10024287; scaffold1219 TRF Tandem_Repeat 575631 575672 59 + . . scaffold1219 GLEAN mRNA 679748 679805 0.995315 - . ID=CGI_10024289; scaffold1219 TRF Tandem_Repeat 679748 679805 100 + . . scaffold1219 GLEAN mRNA 679748 679793 0.995315 - . ID=CGI_10024289; scaffold1219 TRF Tandem_Repeat 679748 679793 56 + . . scaffold1219 GLEAN mRNA 731076 731133 0.999664 + . ID=CGI_10024296; scaffold1219 TRF Tandem_Repeat 731076 731133 109 + . . scaffold1219 GLEAN mRNA 734779 734831 0.999664 + . ID=CGI_10024296; scaffold1219 TRF Tandem_Repeat 734779 734831 97 + . . scaffold1219 GLEAN mRNA 736395 736510 0.999664 + . ID=CGI_10024296; scaffold1219 TRF Tandem_Repeat 736395 736510 173 + . . scaffold1219 GLEAN mRNA 848380 848423 0.999997 - . ID=CGI_10024300; scaffold1219 TRF Tandem_Repeat 848380 848423 88 + . . scaffold1219 GLEAN mRNA 848380 848423 0.997976 + . ID=CGI_10024301; scaffold1219 TRF Tandem_Repeat 848380 848423 88 + . . scaffold1219 GLEAN mRNA 870448 870834 0.999351 + . ID=CGI_10024304; scaffold1219 WUBlastX LINE_L1-Tx1 870448 870834 82 - . . scaffold1219 GLEAN mRNA 870343 870828 0.999351 + . ID=CGI_10024304; scaffold1219 WUBlastX LINE_L1-Tx1 870343 870828 30 - . . scaffold1219 GLEAN mRNA 870451 871062 0.999351 + . ID=CGI_10024304; scaffold1219 WUBlastX LINE_L1-Tx1 870451 871062 46 - . . scaffold1219 GLEAN mRNA 870640 870870 0.999351 + . ID=CGI_10024304; scaffold1219 WUBlastX LINE_Dong-R4 870640 870870 51 - . . scaffold1219 GLEAN mRNA 878178 878223 0.449005 - . ID=CGI_10024306; scaffold1219 TRF Tandem_Repeat 878178 878223 92 + . . scaffold1219 GLEAN mRNA 893192 893245 0.837482 - . ID=CGI_10024307; scaffold1219 TRF Tandem_Repeat 893192 893245 63 + . . scaffold1219 GLEAN mRNA 893192 893239 0.837482 - . ID=CGI_10024307; scaffold1219 TRF Tandem_Repeat 893192 893239 69 + . . scaffold1219 GLEAN mRNA 896885 897184 0.837482 - . ID=CGI_10024307; scaffold1219 WUBlastX DNA_hAT-Blackja 896885 897184 80 - . . scaffold502 GLEAN mRNA 4620 5363 1 + . ID=CGI_10024310; scaffold502 TRF Tandem_Repeat 4620 5363 754 + . . scaffold502 GLEAN mRNA 10455 10516 0.980878 + . ID=CGI_10024311; scaffold502 TRF Tandem_Repeat 10455 10516 63 + . . scaffold502 GLEAN mRNA 19554 19617 0.980878 + . ID=CGI_10024311; scaffold502 TRF Tandem_Repeat 19554 19617 119 + . . scaffold502 GLEAN mRNA 69163 69199 0.642831 + . ID=CGI_10024313; scaffold502 TRF Tandem_Repeat 69163 69199 56 + . . scaffold502 GLEAN mRNA 74765 75895 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1 74765 75895 269 + . . scaffold502 GLEAN mRNA 75879 76517 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1 75879 76517 228 + . . scaffold502 GLEAN mRNA 73534 73836 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1-Tx1 73534 73836 23 - . . scaffold502 GLEAN mRNA 73582 73830 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1-Tx1 73582 73830 62 - . . scaffold502 GLEAN mRNA 73582 73884 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1-Tx1 73582 73884 31 - . . scaffold502 GLEAN mRNA 74373 74756 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1-Tx1 74373 74756 250 + . . scaffold502 GLEAN mRNA 74762 75472 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1-Tx1 74762 75472 340 + . . scaffold502 GLEAN mRNA 75777 76385 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1-Tx1 75777 76385 320 + . . scaffold502 GLEAN mRNA 77315 77977 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1-Tx1 77315 77977 282 + . . scaffold502 GLEAN mRNA 76587 76643 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1 76587 76643 23 + . . scaffold502 GLEAN mRNA 79229 79708 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LTR_Ngaro 79229 79708 258 - . . scaffold502 GLEAN mRNA 77240 78034 0.642831 + . ID=CGI_10024313; scaffold502 WUBlastX LINE_L1 77240 78034 29 + . . scaffold502 GLEAN mRNA 201428 201649 0.612374 - . ID=CGI_10024316; scaffold502 WUBlastX DNA_IS4EU 201428 201649 40 - . . scaffold502 GLEAN mRNA 266983 267091 0.339102 + . ID=CGI_10024318; scaffold502 TRF Tandem_Repeat 266983 267091 74 + . . scaffold502 GLEAN mRNA 285363 285665 0.339102 + . ID=CGI_10024318; scaffold502 TRF Tandem_Repeat 285363 285665 371 + . . scaffold502 GLEAN mRNA 285393 285667 0.339102 + . ID=CGI_10024318; scaffold502 TRF Tandem_Repeat 285393 285667 316 + . . scaffold502 GLEAN mRNA 285361 285665 0.339102 + . ID=CGI_10024318; scaffold502 TRF Tandem_Repeat 285361 285665 369 + . . scaffold502 GLEAN mRNA 291050 291210 0.339102 + . ID=CGI_10024318; scaffold502 TRF Tandem_Repeat 291050 291210 216 + . . scaffold502 GLEAN mRNA 279315 280328 0.339102 + . ID=CGI_10024318; scaffold502 WUBlastX LINE_Penelope 279315 280328 26 - . . scaffold502 GLEAN mRNA 280349 280522 0.339102 + . ID=CGI_10024318; scaffold502 WUBlastX LINE_Penelope 280349 280522 28 - . . scaffold502 GLEAN mRNA 280391 280528 0.339102 + . ID=CGI_10024318; scaffold502 WUBlastX LINE_Penelope 280391 280528 33 - . . scaffold502 GLEAN mRNA 280394 280507 0.339102 + . ID=CGI_10024318; scaffold502 WUBlastX LINE_Penelope 280394 280507 47 - . . scaffold502 GLEAN mRNA 279831 280037 0.339102 + . ID=CGI_10024318; scaffold502 WUBlastX LINE_Penelope 279831 280037 47 - . . scaffold502 GLEAN mRNA 323841 323890 1 + . ID=CGI_10024322; scaffold502 TRF Tandem_Repeat 323841 323890 100 + . . scaffold502 GLEAN mRNA 339435 339502 0.966898 - . ID=CGI_10024324; scaffold502 TRF Tandem_Repeat 339435 339502 136 + . . scaffold502 GLEAN mRNA 342147 342580 0.966898 - . ID=CGI_10024324; scaffold502 TRF Tandem_Repeat 342147 342580 429 + . . scaffold502 GLEAN mRNA 367520 367553 0.998021 - . ID=CGI_10024326; scaffold502 TRF Tandem_Repeat 367520 367553 50 + . . scaffold502 GLEAN mRNA 370883 370921 0.996053 - . ID=CGI_10024327; scaffold502 TRF Tandem_Repeat 370883 370921 53 + . . scaffold502 GLEAN mRNA 373775 373897 0.996053 - . ID=CGI_10024327; scaffold502 TRF Tandem_Repeat 373775 373897 90 + . . scaffold502 GLEAN mRNA 373896 374077 0.996053 - . ID=CGI_10024327; scaffold502 TRF Tandem_Repeat 373896 374077 152 + . . scaffold502 GLEAN mRNA 374699 374743 0.996053 - . ID=CGI_10024327; scaffold502 TRF Tandem_Repeat 374699 374743 81 + . . scaffold502 GLEAN mRNA 514533 514602 0.999994 - . ID=CGI_10024331; scaffold502 TRF Tandem_Repeat 514533 514602 122 + . . scaffold502 GLEAN mRNA 566608 567257 1 - . ID=CGI_10024335; scaffold502 TRF Tandem_Repeat 566608 567257 924 + . . scaffold502 GLEAN mRNA 567955 568225 1 - . ID=CGI_10024335; scaffold502 TRF Tandem_Repeat 567955 568225 431 + . . scaffold502 GLEAN mRNA 574765 574986 1 - . ID=CGI_10024335; scaffold502 WUBlastX LINE_RTE-X 574765 574986 57 + . . scaffold502 GLEAN mRNA 579479 580166 0.544521 + . ID=CGI_10024336; scaffold502 TRF Tandem_Repeat 579479 580166 695 + . . scaffold502 GLEAN mRNA 580658 581107 0.544521 + . ID=CGI_10024336; scaffold502 TRF Tandem_Repeat 580658 581107 657 + . . scaffold502 GLEAN mRNA 583634 583765 0.544521 + . ID=CGI_10024336; scaffold502 TRF Tandem_Repeat 583634 583765 201 + . . scaffold502 GLEAN mRNA 583732 584100 0.544521 + . ID=CGI_10024336; scaffold502 TRF Tandem_Repeat 583732 584100 421 + . . scaffold502 GLEAN mRNA 583636 584077 0.544521 + . ID=CGI_10024336; scaffold502 TRF Tandem_Repeat 583636 584077 501 + . . scaffold502 GLEAN mRNA 587360 588370 0.544521 + . ID=CGI_10024336; scaffold502 TRF Tandem_Repeat 587360 588370 945 + . . scaffold502 GLEAN mRNA 574765 574986 0.544521 + . ID=CGI_10024336; scaffold502 WUBlastX LINE_RTE-X 574765 574986 57 + . . scaffold502 GLEAN mRNA 590355 590554 0.544521 + . ID=CGI_10024336; scaffold502 TRF Tandem_Repeat 590355 590554 391 + . . scaffold502 GLEAN mRNA 617821 617864 0.999597 + . ID=CGI_10024338; scaffold502 TRF Tandem_Repeat 617821 617864 88 + . . scaffold502 GLEAN mRNA 625286 625795 0.999597 + . ID=CGI_10024338; scaffold502 WUBlastX LINE_CR1 625286 625795 124 - . . scaffold502 GLEAN mRNA 624950 625684 0.999597 + . ID=CGI_10024338; scaffold502 WUBlastX LINE_CR1 624950 625684 468 - . . scaffold502 GLEAN mRNA 641213 642681 0.8139 - . ID=CGI_10024339; scaffold502 TRF Tandem_Repeat 641213 642681 1530 + . . scaffold502 GLEAN mRNA 641901 642124 0.8139 - . ID=CGI_10024339; scaffold502 TRF Tandem_Repeat 641901 642124 211 + . . scaffold502 GLEAN mRNA 679452 679496 0.854871 - . ID=CGI_10024340; scaffold502 TRF Tandem_Repeat 679452 679496 90 + . . scaffold502 GLEAN mRNA 694652 694695 0.999676 + . ID=CGI_10024342; scaffold502 TRF Tandem_Repeat 694652 694695 70 + . . scaffold502 GLEAN mRNA 694653 694691 0.999676 + . ID=CGI_10024342; scaffold502 TRF Tandem_Repeat 694653 694691 60 + . . scaffold502 GLEAN mRNA 713575 714573 0.998302 + . ID=CGI_10024345; scaffold502 TRF Tandem_Repeat 713575 714573 1005 + . . scaffold502 GLEAN mRNA 780176 780206 0.91725 + . ID=CGI_10024346; scaffold502 TRF Tandem_Repeat 780176 780206 53 + . . scaffold502 GLEAN mRNA 797610 798503 0.91725 + . ID=CGI_10024346; scaffold502 WUBlastX LTR_Ngaro 797610 798503 202 - . . scaffold502 GLEAN mRNA 790770 791084 0.91725 + . ID=CGI_10024346; scaffold502 WUBlastX LINE_Penelope 790770 791084 52 - . . scaffold502 GLEAN mRNA 824187 824394 0.896224 - . ID=CGI_10024347; scaffold502 TRF Tandem_Repeat 824187 824394 285 + . . scaffold502 GLEAN mRNA 832204 832364 0.896224 - . ID=CGI_10024347; scaffold502 TRF Tandem_Repeat 832204 832364 69 + . . scaffold1785 GLEAN mRNA 22792 23715 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_RTE-X 22792 23715 162 + . . scaffold1785 GLEAN mRNA 22792 23523 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_RTE-X 22792 23523 162 + . . scaffold1785 GLEAN mRNA 22157 22786 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_CR1 22157 22786 103 + . . scaffold1785 GLEAN mRNA 22795 23307 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_RTE-X 22795 23307 164 + . . scaffold1785 GLEAN mRNA 22271 22798 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_L2 22271 22798 152 + . . scaffold1785 GLEAN mRNA 20431 20874 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_L1 20431 20874 151 + . . scaffold1785 GLEAN mRNA 22066 22365 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_RTE-X 22066 22365 87 + . . scaffold1785 GLEAN mRNA 20431 21000 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_L2 20431 21000 110 + . . scaffold1785 GLEAN mRNA 22358 22780 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_RTE-X 22358 22780 168 + . . scaffold1785 GLEAN mRNA 22795 24087 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_RTE-X 22795 24087 108 + . . scaffold1785 GLEAN mRNA 21339 21446 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_I 21339 21446 21 + . . scaffold1785 GLEAN mRNA 20416 21093 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_L1 20416 21093 45 + . . scaffold1785 GLEAN mRNA 35066 37384 0.430327 - . ID=CGI_10024350; scaffold1785 WUBlastX LINE_RTE-X 35066 37384 1064 + . . scaffold1785 GLEAN mRNA 33190 33297 0.430327 - . ID=CGI_10024350; scaffold1785 WUBlastX DNA_IS4EU 33190 33297 23 - . . scaffold1785 GLEAN mRNA 67147 67396 0.990934 - . ID=CGI_10024355; scaffold1785 TRF Tandem_Repeat 67147 67396 437 + . . scaffold1785 GLEAN mRNA 72975 73493 0.990934 - . ID=CGI_10024355; scaffold1785 WUBlastX LINE_I 72975 73493 22 - . . scaffold1785 GLEAN mRNA 94067 94862 0.878427 - . ID=CGI_10024356; scaffold1785 TRF Tandem_Repeat 94067 94862 1251 + . . scaffold1785 GLEAN mRNA 94893 94948 0.878427 - . ID=CGI_10024356; scaffold1785 TRF Tandem_Repeat 94893 94948 67 + . . scaffold1785 GLEAN mRNA 98498 98587 0.878427 - . ID=CGI_10024356; scaffold1785 TRF Tandem_Repeat 98498 98587 57 + . . scaffold1785 GLEAN mRNA 98525 98585 0.878427 - . ID=CGI_10024356; scaffold1785 TRF Tandem_Repeat 98525 98585 52 + . . scaffold1785 GLEAN mRNA 133603 133646 0.990978 + . ID=CGI_10024360; scaffold1785 TRF Tandem_Repeat 133603 133646 52 + . . scaffold1785 GLEAN mRNA 133603 133650 0.990978 + . ID=CGI_10024360; scaffold1785 TRF Tandem_Repeat 133603 133650 69 + . . scaffold1785 GLEAN mRNA 195906 196508 1 + . ID=CGI_10024365; scaffold1785 TRF Tandem_Repeat 195906 196508 623 + . . scaffold1785 GLEAN mRNA 201133 201495 1 + . ID=CGI_10024365; scaffold1785 TRF Tandem_Repeat 201133 201495 572 + . . scaffold1785 GLEAN mRNA 201273 201366 1 + . ID=CGI_10024365; scaffold1785 TRF Tandem_Repeat 201273 201366 60 + . . scaffold1785 GLEAN mRNA 227537 227600 0.997365 - . ID=CGI_10024368; scaffold1785 TRF Tandem_Repeat 227537 227600 101 + . . scaffold1785 GLEAN mRNA 243691 243729 0.526332 + . ID=CGI_10024369; scaffold1785 TRF Tandem_Repeat 243691 243729 51 + . . scaffold1785 GLEAN mRNA 243690 243733 0.526332 + . ID=CGI_10024369; scaffold1785 TRF Tandem_Repeat 243690 243733 61 + . . scaffold1785 GLEAN mRNA 243741 244595 0.526332 + . ID=CGI_10024369; scaffold1785 TRF Tandem_Repeat 243741 244595 1550 + . . scaffold1785 GLEAN mRNA 245293 245546 0.526332 + . ID=CGI_10024369; scaffold1785 TRF Tandem_Repeat 245293 245546 472 + . . scaffold1785 GLEAN mRNA 246068 246096 0.526332 + . ID=CGI_10024369; scaffold1785 TRF Tandem_Repeat 246068 246096 58 + . . scaffold1785 GLEAN mRNA 270418 270458 0.526332 + . ID=CGI_10024369; scaffold1785 TRF Tandem_Repeat 270418 270458 82 + . . scaffold1785 GLEAN mRNA 298921 299047 1 - . ID=CGI_10024376; scaffold1785 TRF Tandem_Repeat 298921 299047 209 + . . scaffold1785 GLEAN mRNA 301030 301100 1 - . ID=CGI_10024376; scaffold1785 TRF Tandem_Repeat 301030 301100 72 + . . scaffold1785 GLEAN mRNA 378113 378458 0.575961 - . ID=CGI_10024382; scaffold1785 TRF Tandem_Repeat 378113 378458 584 + . . scaffold1785 GLEAN mRNA 378522 378691 0.575961 - . ID=CGI_10024382; scaffold1785 TRF Tandem_Repeat 378522 378691 331 + . . scaffold1785 GLEAN mRNA 379506 379647 0.575961 - . ID=CGI_10024382; scaffold1785 TRF Tandem_Repeat 379506 379647 275 + . . scaffold1785 GLEAN mRNA 385092 385123 0.575961 - . ID=CGI_10024382; scaffold1785 TRF Tandem_Repeat 385092 385123 64 + . . scaffold1785 GLEAN mRNA 393827 394069 0.765808 - . ID=CGI_10024383; scaffold1785 TRF Tandem_Repeat 393827 394069 432 + . . scaffold1785 GLEAN mRNA 401993 402053 0.765808 - . ID=CGI_10024383; scaffold1785 TRF Tandem_Repeat 401993 402053 122 + . . scaffold1785 GLEAN mRNA 410733 410792 1 + . ID=CGI_10024384; scaffold1785 TRF Tandem_Repeat 410733 410792 102 + . . scaffold1785 GLEAN mRNA 410997 411750 1 + . ID=CGI_10024384; scaffold1785 TRF Tandem_Repeat 410997 411750 1018 + . . scaffold1785 GLEAN mRNA 415031 415420 1 + . ID=CGI_10024384; scaffold1785 WUBlastX LINE_L1-Tx1 415031 415420 27 + . . scaffold1785 GLEAN mRNA 434331 435020 0.272926 - . ID=CGI_10024386; scaffold1785 TRF Tandem_Repeat 434331 435020 1335 + . . scaffold1785 GLEAN mRNA 435868 436263 0.272926 - . ID=CGI_10024386; scaffold1785 TRF Tandem_Repeat 435868 436263 783 + . . scaffold1785 GLEAN mRNA 439393 439630 0.272926 - . ID=CGI_10024386; scaffold1785 TRF Tandem_Repeat 439393 439630 134 + . . scaffold1785 GLEAN mRNA 440510 440664 0.272926 - . ID=CGI_10024386; scaffold1785 TRF Tandem_Repeat 440510 440664 134 + . . scaffold1785 GLEAN mRNA 465689 465738 0.272926 - . ID=CGI_10024386; scaffold1785 TRF Tandem_Repeat 465689 465738 100 + . . scaffold1785 GLEAN mRNA 532546 532583 0.457905 + . ID=CGI_10024389; scaffold1785 TRF Tandem_Repeat 532546 532583 76 + . . scaffold1785 GLEAN mRNA 533532 533569 0.457905 + . ID=CGI_10024389; scaffold1785 TRF Tandem_Repeat 533532 533569 76 + . . scaffold1785 GLEAN mRNA 544164 544209 0.457905 + . ID=CGI_10024389; scaffold1785 TRF Tandem_Repeat 544164 544209 92 + . . scaffold1785 GLEAN mRNA 547291 548189 0.457905 + . ID=CGI_10024389; scaffold1785 TRF Tandem_Repeat 547291 548189 835 + . . scaffold1785 GLEAN mRNA 544242 544388 0.457905 + . ID=CGI_10024389; scaffold1785 WUBlastX LINE_CR1 544242 544388 64 + . . scaffold1785 GLEAN mRNA 544242 544427 0.457905 + . ID=CGI_10024389; scaffold1785 WUBlastX LINE_CR1 544242 544427 62 + . . scaffold1785 GLEAN mRNA 544486 544764 0.457905 + . ID=CGI_10024389; scaffold1785 WUBlastX LINE_CR1-L2 544486 544764 161 + . . scaffold1785 GLEAN mRNA 544441 544878 0.457905 + . ID=CGI_10024389; scaffold1785 WUBlastX LINE_L2 544441 544878 99 + . . scaffold1785 GLEAN mRNA 544420 544806 0.457905 + . ID=CGI_10024389; scaffold1785 WUBlastX LINE_CR1-L2 544420 544806 139 + . . scaffold1785 GLEAN mRNA 544776 545027 0.457905 + . ID=CGI_10024389; scaffold1785 WUBlastX LINE_L2 544776 545027 37 + . . scaffold1785 GLEAN mRNA 545035 545199 0.457905 + . ID=CGI_10024389; scaffold1785 WUBlastX LINE_L2 545035 545199 36 + . . scaffold1785 GLEAN mRNA 640757 640848 0.539712 - . ID=CGI_10024391; scaffold1785 TRF Tandem_Repeat 640757 640848 184 + . . scaffold1785 GLEAN mRNA 643515 643618 0.539712 - . ID=CGI_10024391; scaffold1785 TRF Tandem_Repeat 643515 643618 79 + . . scaffold1785 GLEAN mRNA 648723 649376 0.539712 - . ID=CGI_10024391; scaffold1785 WUBlastX LTR_Ngaro 648723 649376 62 + . . scaffold1785 GLEAN mRNA 648081 648188 0.539712 - . ID=CGI_10024391; scaffold1785 WUBlastX LTR_Ngaro 648081 648188 32 + . . scaffold1785 GLEAN mRNA 647907 648212 0.539712 - . ID=CGI_10024391; scaffold1785 WUBlastX LTR_Ngaro 647907 648212 24 + . . scaffold1785 GLEAN mRNA 648170 648412 0.539712 - . ID=CGI_10024391; scaffold1785 WUBlastX LTR_Ngaro 648170 648412 24 + . . scaffold1785 GLEAN mRNA 648167 648370 0.539712 - . ID=CGI_10024391; scaffold1785 WUBlastX LTR_Ngaro 648167 648370 82 + . . scaffold1785 GLEAN mRNA 648412 648558 0.539712 - . ID=CGI_10024391; scaffold1785 WUBlastX LTR_Ngaro 648412 648558 26 + . . scaffold1785 GLEAN mRNA 662485 662531 0.999624 + . ID=CGI_10024392; scaffold1785 TRF Tandem_Repeat 662485 662531 94 + . . scaffold1785 GLEAN mRNA 669828 669888 0.283097 + . ID=CGI_10024393; scaffold1785 TRF Tandem_Repeat 669828 669888 122 + . . scaffold1785 GLEAN mRNA 678468 678512 0.283097 + . ID=CGI_10024393; scaffold1785 TRF Tandem_Repeat 678468 678512 90 + . . scaffold1785 GLEAN mRNA 750684 750786 1 - . ID=CGI_10024396; scaffold1785 TRF Tandem_Repeat 750684 750786 147 + . . scaffold1785 GLEAN mRNA 752782 752820 1 - . ID=CGI_10024396; scaffold1785 TRF Tandem_Repeat 752782 752820 78 + . . scaffold1785 GLEAN mRNA 756457 756509 1 - . ID=CGI_10024396; scaffold1785 TRF Tandem_Repeat 756457 756509 99 + . . scaffold1785 GLEAN mRNA 766372 766397 1 + . ID=CGI_10024397; scaffold1785 TRF Tandem_Repeat 766372 766397 52 + . . scaffold1785 GLEAN mRNA 767853 767887 1 + . ID=CGI_10024397; scaffold1785 TRF Tandem_Repeat 767853 767887 70 + . . scaffold1785 GLEAN mRNA 768218 768250 1 + . ID=CGI_10024397; scaffold1785 TRF Tandem_Repeat 768218 768250 66 + . . scaffold1785 GLEAN mRNA 778299 779113 0.6802 - . ID=CGI_10024398; scaffold1785 TRF Tandem_Repeat 778299 779113 785 + . . scaffold1785 GLEAN mRNA 800262 800356 0.994591 - . ID=CGI_10024400; scaffold1785 TRF Tandem_Repeat 800262 800356 84 + . . scaffold1785 GLEAN mRNA 804425 804503 0.994591 - . ID=CGI_10024400; scaffold1785 TRF Tandem_Repeat 804425 804503 86 + . . scaffold1785 GLEAN mRNA 804425 804499 0.994591 - . ID=CGI_10024400; scaffold1785 TRF Tandem_Repeat 804425 804499 96 + . . scaffold1785 GLEAN mRNA 804424 804511 0.994591 - . ID=CGI_10024400; scaffold1785 TRF Tandem_Repeat 804424 804511 59 + . . scaffold1785 GLEAN mRNA 805683 806130 0.994591 - . ID=CGI_10024400; scaffold1785 TRF Tandem_Repeat 805683 806130 671 + . . scaffold1785 GLEAN mRNA 811284 811330 0.994591 - . ID=CGI_10024400; scaffold1785 TRF Tandem_Repeat 811284 811330 94 + . . scaffold1785 GLEAN mRNA 821116 821158 0.994591 - . ID=CGI_10024400; scaffold1785 TRF Tandem_Repeat 821116 821158 86 + . . scaffold1785 GLEAN mRNA 823530 823629 0.994591 - . ID=CGI_10024400; scaffold1785 TRF Tandem_Repeat 823530 823629 173 + . . scaffold1785 GLEAN mRNA 824605 824895 0.994591 - . ID=CGI_10024400; scaffold1785 TRF Tandem_Repeat 824605 824895 275 + . . scaffold1785 GLEAN mRNA 824605 824943 0.994591 - . ID=CGI_10024400; scaffold1785 TRF Tandem_Repeat 824605 824943 269 + . . scaffold1785 GLEAN mRNA 848686 848739 0.197068 - . ID=CGI_10024401; scaffold1785 TRF Tandem_Repeat 848686 848739 99 + . . scaffold1785 GLEAN mRNA 851024 851113 0.197068 - . ID=CGI_10024401; scaffold1785 TRF Tandem_Repeat 851024 851113 155 + . . scaffold1785 GLEAN mRNA 843163 843819 0.197068 - . ID=CGI_10024401; scaffold1785 WUBlastX LINE_L1-Tx1 843163 843819 191 + . . scaffold1785 GLEAN mRNA 843815 844516 0.197068 - . ID=CGI_10024401; scaffold1785 WUBlastX LINE_L1-Tx1 843815 844516 131 + . . scaffold1785 GLEAN mRNA 843055 843504 0.197068 - . ID=CGI_10024401; scaffold1785 WUBlastX LINE_L1 843055 843504 40 + . . scaffold1785 GLEAN mRNA 854189 854220 0.197068 - . ID=CGI_10024401; scaffold1785 TRF Tandem_Repeat 854189 854220 55 + . . scaffold1785 GLEAN mRNA 854530 854567 0.197068 - . ID=CGI_10024401; scaffold1785 TRF Tandem_Repeat 854530 854567 51 + . . scaffold1785 GLEAN mRNA 909983 910016 0.54223 - . ID=CGI_10024406; scaffold1785 TRF Tandem_Repeat 909983 910016 68 + . . scaffold1785 GLEAN mRNA 911957 912028 0.54223 - . ID=CGI_10024406; scaffold1785 TRF Tandem_Repeat 911957 912028 90 + . . scaffold1785 GLEAN mRNA 909599 909844 0.54223 - . ID=CGI_10024406; scaffold1785 WUBlastX DNA_Harbinger 909599 909844 125 - . . scaffold1785 GLEAN mRNA 918475 918522 0.54223 - . ID=CGI_10024406; scaffold1785 TRF Tandem_Repeat 918475 918522 96 + . . scaffold1785 GLEAN mRNA 927511 927662 0.54223 - . ID=CGI_10024406; scaffold1785 WUBlastX DNA_hAT-Ac 927511 927960 67 - . . scaffold1785 GLEAN mRNA 927475 927662 0.54223 - . ID=CGI_10024406; scaffold1785 WUBlastX DNA_hAT-Ac 927475 927816 75 - . . scaffold784 GLEAN mRNA 55983 56117 0.717636 - . ID=CGI_10024410; scaffold784 TRF Tandem_Repeat 55983 56117 180 + . . scaffold784 GLEAN mRNA 59229 59281 0.717636 - . ID=CGI_10024410; scaffold784 TRF Tandem_Repeat 59229 59281 63 + . . scaffold784 GLEAN mRNA 170280 170333 0.816532 + . ID=CGI_10024412; scaffold784 TRF Tandem_Repeat 170280 170333 108 + . . scaffold784 GLEAN mRNA 188269 189006 0.744931 - . ID=CGI_10024415; scaffold784 TRF Tandem_Repeat 188269 189006 923 + . . scaffold784 GLEAN mRNA 188260 189110 0.744931 - . ID=CGI_10024415; scaffold784 TRF Tandem_Repeat 188260 189110 829 + . . scaffold784 GLEAN mRNA 186619 186900 0.744931 - . ID=CGI_10024415; scaffold784 WUBlastX LINE_L1 186619 186900 29 + . . scaffold784 GLEAN mRNA 185848 186534 0.744931 - . ID=CGI_10024415; scaffold784 WUBlastX LINE_L1 185848 186534 65 + . . scaffold784 GLEAN mRNA 186019 186837 0.744931 - . ID=CGI_10024415; scaffold784 WUBlastX LINE_L1-Tx1 186019 186837 225 + . . scaffold784 GLEAN mRNA 251646 251673 0.999564 - . ID=CGI_10024419; scaffold784 TRF Tandem_Repeat 251646 251673 56 + . . scaffold784 GLEAN mRNA 306643 306729 0.999951 - . ID=CGI_10024422; scaffold784 TRF Tandem_Repeat 306643 306729 122 + . . scaffold784 GLEAN mRNA 303497 304150 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 303497 304150 159 + . . scaffold784 GLEAN mRNA 303934 304200 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 303934 304200 63 + . . scaffold784 GLEAN mRNA 303364 303600 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 303364 303600 276 + . . scaffold784 GLEAN mRNA 306915 308897 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LTR_Gypsy 306915 309275 1349 - . . scaffold784 GLEAN mRNA 306501 306614 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LTR_Gypsy 306501 306614 27 - . . scaffold784 GLEAN mRNA 303602 303985 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 303602 303985 493 + . . scaffold784 GLEAN mRNA 304251 304310 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 304251 304310 23 + . . scaffold784 GLEAN mRNA 301210 302145 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 301210 302145 699 + . . scaffold784 GLEAN mRNA 302142 303272 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 302142 303272 544 + . . scaffold784 GLEAN mRNA 303159 303419 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 303159 303419 287 + . . scaffold784 GLEAN mRNA 306410 306478 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LTR_Copia 306410 306478 30 - . . scaffold784 GLEAN mRNA 304153 304299 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_Proto2 304153 304299 26 + . . scaffold784 GLEAN mRNA 326123 326158 0.970454 + . ID=CGI_10024423; scaffold784 TRF Tandem_Repeat 326123 326158 72 + . . scaffold784 GLEAN mRNA 328794 328825 0.970454 + . ID=CGI_10024423; scaffold784 TRF Tandem_Repeat 328794 328825 55 + . . scaffold784 GLEAN mRNA 333436 333477 0.970454 + . ID=CGI_10024423; scaffold784 TRF Tandem_Repeat 333436 333477 84 + . . scaffold784 GLEAN mRNA 336801 336841 0.970454 + . ID=CGI_10024423; scaffold784 TRF Tandem_Repeat 336801 336841 55 + . . scaffold784 GLEAN mRNA 348220 348256 0.971564 + . ID=CGI_10024424; scaffold784 TRF Tandem_Repeat 348220 348256 74 + . . scaffold784 GLEAN mRNA 348285 348322 0.971564 + . ID=CGI_10024424; scaffold784 TRF Tandem_Repeat 348285 348322 76 + . . scaffold784 GLEAN mRNA 348348 348406 0.971564 + . ID=CGI_10024424; scaffold784 TRF Tandem_Repeat 348348 348406 118 + . . scaffold784 GLEAN mRNA 349134 349180 0.971564 + . ID=CGI_10024424; scaffold784 TRF Tandem_Repeat 349134 349180 76 + . . scaffold784 GLEAN mRNA 349228 349252 0.971564 + . ID=CGI_10024424; scaffold784 TRF Tandem_Repeat 349228 349252 50 + . . scaffold784 GLEAN mRNA 357742 357806 0.992181 - . ID=CGI_10024426; scaffold784 TRF Tandem_Repeat 357742 357806 130 + . . scaffold784 GLEAN mRNA 365045 365083 0.996041 - . ID=CGI_10024427; scaffold784 TRF Tandem_Repeat 365045 365083 78 + . . scaffold784 GLEAN mRNA 366673 366703 0.996041 - . ID=CGI_10024427; scaffold784 TRF Tandem_Repeat 366673 366703 62 + . . scaffold784 GLEAN mRNA 368825 368866 0.996041 - . ID=CGI_10024427; scaffold784 TRF Tandem_Repeat 368825 368866 84 + . . scaffold784 GLEAN mRNA 374293 374338 0.996819 + . ID=CGI_10024428; scaffold784 TRF Tandem_Repeat 374293 374338 92 + . . scaffold784 GLEAN mRNA 452721 452846 0.401004 + . ID=CGI_10024430; scaffold784 TRF Tandem_Repeat 452721 452846 227 + . . scaffold784 GLEAN mRNA 453708 453923 0.401004 + . ID=CGI_10024430; scaffold784 WUBlastX LINE_RTE-X 453708 453923 58 + . . scaffold784 GLEAN mRNA 514835 515056 0.46437 + . ID=CGI_10024431; scaffold784 TRF Tandem_Repeat 514835 515056 129 + . . scaffold784 GLEAN mRNA 528873 529130 0.58638 + . ID=CGI_10024432; scaffold784 TRF Tandem_Repeat 528873 529130 435 + . . scaffold784 GLEAN mRNA 543434 543713 0.630658 + . ID=CGI_10024433; scaffold784 TRF Tandem_Repeat 543434 543713 186 + . . scaffold784 GLEAN mRNA 543751 544145 0.630658 + . ID=CGI_10024433; scaffold784 TRF Tandem_Repeat 543751 544145 329 + . . scaffold784 GLEAN mRNA 631080 631175 0.999415 + . ID=CGI_10024437; scaffold784 TRF Tandem_Repeat 631080 631175 104 + . . scaffold784 GLEAN mRNA 631083 631174 0.999415 + . ID=CGI_10024437; scaffold784 TRF Tandem_Repeat 631083 631174 77 + . . scaffold784 GLEAN mRNA 631200 631312 0.999415 + . ID=CGI_10024437; scaffold784 TRF Tandem_Repeat 631200 631312 50 + . . scaffold784 GLEAN mRNA 631189 631271 0.999415 + . ID=CGI_10024437; scaffold784 TRF Tandem_Repeat 631189 631271 71 + . . scaffold784 GLEAN mRNA 631196 631308 0.999415 + . ID=CGI_10024437; scaffold784 TRF Tandem_Repeat 631196 631308 62 + . . scaffold784 GLEAN mRNA 631201 631301 0.999415 + . ID=CGI_10024437; scaffold784 TRF Tandem_Repeat 631201 631301 123 + . . scaffold784 GLEAN mRNA 633831 633881 0.999415 + . ID=CGI_10024437; scaffold784 TRF Tandem_Repeat 633831 633881 102 + . . scaffold784 GLEAN mRNA 624445 624489 0.999415 + . ID=CGI_10024437; scaffold784 WUBlastX LINE_CR1-L2 624397 624489 45 - . . scaffold784 GLEAN mRNA 624445 624507 0.999415 + . ID=CGI_10024437; scaffold784 WUBlastX LINE_L2 624400 624507 32 - . . scaffold784 GLEAN mRNA 624519 624824 0.999415 + . ID=CGI_10024437; scaffold784 WUBlastX LINE_L2 624519 624824 90 - . . scaffold784 GLEAN mRNA 672798 672869 0.999676 + . ID=CGI_10024439; scaffold784 TRF Tandem_Repeat 672798 672869 121 + . . scaffold784 GLEAN mRNA 758106 758162 0.182296 + . ID=CGI_10024441; scaffold784 TRF Tandem_Repeat 758106 758162 114 + . . scaffold784 GLEAN mRNA 758640 759766 0.182296 + . ID=CGI_10024441; scaffold784 TRF Tandem_Repeat 758640 759766 1684 + . . scaffold784 GLEAN mRNA 764105 764145 0.182296 + . ID=CGI_10024441; scaffold784 TRF Tandem_Repeat 764105 764145 82 + . . scaffold784 GLEAN mRNA 765515 765873 0.182296 + . ID=CGI_10024441; scaffold784 TRF Tandem_Repeat 765515 765873 356 + . . scaffold784 GLEAN mRNA 777267 777619 0.836198 - . ID=CGI_10024442; scaffold784 TRF Tandem_Repeat 777267 777619 431 + . . scaffold784 GLEAN mRNA 782988 784060 0.836198 - . ID=CGI_10024442; scaffold784 TRF Tandem_Repeat 782988 784060 1138 + . . scaffold784 GLEAN mRNA 784229 784268 0.836198 - . ID=CGI_10024442; scaffold784 TRF Tandem_Repeat 784229 784268 53 + . . scaffold784 GLEAN mRNA 820177 820226 0.996841 + . ID=CGI_10024443; scaffold784 TRF Tandem_Repeat 820177 820226 100 + . . scaffold784 GLEAN mRNA 821275 821309 0.996841 + . ID=CGI_10024443; scaffold784 TRF Tandem_Repeat 821275 821309 70 + . . scaffold784 GLEAN mRNA 850158 850667 0.990187 - . ID=CGI_10024446; scaffold784 WUBlastX LINE_L2 850158 850667 35 + . . scaffold784 GLEAN mRNA 850353 850625 0.990187 - . ID=CGI_10024446; scaffold784 WUBlastX LINE_RTE-X 850353 850625 94 + . . scaffold784 GLEAN mRNA 850308 850655 0.990187 - . ID=CGI_10024446; scaffold784 WUBlastX LINE_L2 850308 850655 44 + . . scaffold784 GLEAN mRNA 850320 850745 0.990187 - . ID=CGI_10024446; scaffold784 WUBlastX LINE_I 850320 850745 31 + . . scaffold784 GLEAN mRNA 852063 852111 0.990187 - . ID=CGI_10024446; scaffold784 TRF Tandem_Repeat 852063 852111 73 + . . scaffold784 GLEAN mRNA 852063 852117 0.990187 - . ID=CGI_10024446; scaffold784 TRF Tandem_Repeat 852063 852117 71 + . . scaffold784 GLEAN mRNA 858232 858263 0.653409 - . ID=CGI_10024447; scaffold784 TRF Tandem_Repeat 858232 858263 64 + . . scaffold784 GLEAN mRNA 912413 913732 0.999676 + . ID=CGI_10024450; scaffold784 TRF Tandem_Repeat 912413 913732 1714 + . . scaffold784 GLEAN mRNA 908032 908340 0.999676 + . ID=CGI_10024450; scaffold784 WUBlastX DNA_TcMar-Marin 908032 908340 198 - . . scaffold784 GLEAN mRNA 908603 909262 0.999676 + . ID=CGI_10024450; scaffold784 WUBlastX DNA_TcMar-Marin 908603 909262 241 - . . scaffold784 GLEAN mRNA 908143 908385 0.999676 + . ID=CGI_10024450; scaffold784 WUBlastX DNA_TcMar-Tc1 908143 908385 75 - . . scaffold271 GLEAN mRNA 168520 168549 1 - . ID=CGI_10024459; scaffold271 TRF Tandem_Repeat 168520 168549 60 + . . scaffold271 GLEAN mRNA 189203 189841 0.29689 - . ID=CGI_10024460; scaffold271 WUBlastX DNA_Academ 189203 189841 23 - . . scaffold271 GLEAN mRNA 188879 189073 0.29689 - . ID=CGI_10024460; scaffold271 WUBlastX DNA_Academ 188879 189073 22 - . . scaffold271 GLEAN mRNA 189203 189589 0.29689 - . ID=CGI_10024460; scaffold271 WUBlastX DNA_Academ 189203 189589 55 - . . scaffold271 GLEAN mRNA 189770 189880 0.29689 - . ID=CGI_10024460; scaffold271 WUBlastX DNA_Academ 189770 189880 23 - . . scaffold271 GLEAN mRNA 206995 207037 0.29689 - . ID=CGI_10024460; scaffold271 TRF Tandem_Repeat 206995 207037 86 + . . scaffold271 GLEAN mRNA 209205 209238 0.29689 - . ID=CGI_10024460; scaffold271 TRF Tandem_Repeat 209205 209238 68 + . . scaffold271 GLEAN mRNA 212264 212354 0.29689 - . ID=CGI_10024460; scaffold271 TRF Tandem_Repeat 212264 212354 146 + . . scaffold271 GLEAN mRNA 201616 202695 0.29689 - . ID=CGI_10024460; scaffold271 WUBlastX LINE_L2 201616 202695 686 + . . scaffold271 GLEAN mRNA 201391 202701 0.29689 - . ID=CGI_10024460; scaffold271 WUBlastX LINE_L2 201391 202701 89 + . . scaffold271 GLEAN mRNA 274487 274569 1 + . ID=CGI_10024464; scaffold271 TRF Tandem_Repeat 274487 274569 53 + . . scaffold271 GLEAN mRNA 274490 274569 1 + . ID=CGI_10024464; scaffold271 TRF Tandem_Repeat 274490 274569 74 + . . scaffold271 GLEAN mRNA 278923 278974 0.999653 - . ID=CGI_10024465; scaffold271 TRF Tandem_Repeat 278923 278974 79 + . . scaffold271 GLEAN mRNA 278314 278596 0.999653 - . ID=CGI_10024465; scaffold271 TRF Tandem_Repeat 278314 278596 332 + . . scaffold271 GLEAN mRNA 307846 308228 1 - . ID=CGI_10024469; scaffold271 TRF Tandem_Repeat 307846 308228 658 + . . scaffold271 GLEAN mRNA 317605 318419 1 - . ID=CGI_10024469; scaffold271 TRF Tandem_Repeat 317605 318419 638 + . . scaffold271 GLEAN mRNA 317928 318419 1 - . ID=CGI_10024469; scaffold271 TRF Tandem_Repeat 317928 318419 551 + . . scaffold271 GLEAN mRNA 366787 367122 0.33399 + . ID=CGI_10024471; scaffold271 WUBlastX DNA_MuDR 366787 367122 23 + . . scaffold271 GLEAN mRNA 377003 377274 1 - . ID=CGI_10024472; scaffold271 TRF Tandem_Repeat 377003 377274 212 + . . scaffold271 GLEAN mRNA 377003 377274 1 - . ID=CGI_10024472; scaffold271 TRF Tandem_Repeat 377003 377274 256 + . . scaffold271 GLEAN mRNA 386758 387009 1 - . ID=CGI_10024473; scaffold271 TRF Tandem_Repeat 386758 387009 263 + . . scaffold271 GLEAN mRNA 386758 387009 1 - . ID=CGI_10024473; scaffold271 TRF Tandem_Repeat 386758 387009 307 + . . scaffold271 GLEAN mRNA 431254 431331 1 - . ID=CGI_10024477; scaffold271 WUBlastX DNA_IS4EU 431254 431331 51 - . . scaffold271 GLEAN mRNA 442791 443105 0.999347 + . ID=CGI_10024478; scaffold271 TRF Tandem_Repeat 442791 443105 402 + . . scaffold271 GLEAN mRNA 442791 443102 0.999347 + . ID=CGI_10024478; scaffold271 TRF Tandem_Repeat 442791 443102 390 + . . scaffold271 GLEAN mRNA 448417 448742 0.999347 + . ID=CGI_10024478; scaffold271 TRF Tandem_Repeat 448417 448742 492 + . . scaffold271 GLEAN mRNA 473819 473950 0.986559 + . ID=CGI_10024481; scaffold271 TRF Tandem_Repeat 473819 473950 95 + . . scaffold271 GLEAN mRNA 470900 471244 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L1-Tx1 470900 471244 28 - . . scaffold271 GLEAN mRNA 469515 469586 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L1 469515 469586 28 - . . scaffold271 GLEAN mRNA 470542 470874 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L1-Tx1 470542 470874 43 - . . scaffold271 GLEAN mRNA 471244 471480 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L1-Tx1 471244 471480 27 - . . scaffold271 GLEAN mRNA 469276 469476 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L1-Tx1 469276 469476 20 - . . scaffold271 GLEAN mRNA 470981 471250 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L1 470981 471250 29 - . . scaffold271 GLEAN mRNA 470374 470874 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L1 470374 470874 35 - . . scaffold271 GLEAN mRNA 469491 469562 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L1-Tx1 469491 469562 20 - . . scaffold271 GLEAN mRNA 470602 470874 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L1-Tx1 470602 470874 65 - . . scaffold271 GLEAN mRNA 471253 471414 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L1-Tx1 471253 471414 54 - . . scaffold271 GLEAN mRNA 471220 471414 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L1-Tx1 471220 471414 47 - . . scaffold271 GLEAN mRNA 476155 476328 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_CR1-L2 476155 476328 70 + . . scaffold271 GLEAN mRNA 476253 476999 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L2 476253 476999 228 + . . scaffold271 GLEAN mRNA 477537 477842 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_CR1-L2 477537 477842 31 + . . scaffold271 GLEAN mRNA 476421 476987 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_CR1-L2 476421 476987 403 + . . scaffold271 GLEAN mRNA 477516 477794 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_CR1-L2 477516 477794 106 + . . scaffold271 GLEAN mRNA 476956 477714 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_CR1-L2 476956 477714 273 + . . scaffold271 GLEAN mRNA 475704 476147 0.986559 + . ID=CGI_10024481; scaffold271 WUBlastX LINE_L2 475704 476147 70 + . . scaffold271 GLEAN mRNA 553767 553857 0.740081 - . ID=CGI_10024486; scaffold271 TRF Tandem_Repeat 553767 553857 173 + . . scaffold271 GLEAN mRNA 560041 560147 0.740081 - . ID=CGI_10024486; scaffold271 TRF Tandem_Repeat 560041 560147 126 + . . scaffold271 GLEAN mRNA 565935 566672 0.740081 - . ID=CGI_10024486; scaffold271 TRF Tandem_Repeat 565935 566672 1236 + . . scaffold271 GLEAN mRNA 654514 654551 0.530942 - . ID=CGI_10024493; scaffold271 TRF Tandem_Repeat 654514 654551 58 + . . scaffold271 GLEAN mRNA 654506 654560 0.530942 - . ID=CGI_10024493; scaffold271 TRF Tandem_Repeat 654506 654560 76 + . . scaffold271 GLEAN mRNA 680798 680866 0.999368 + . ID=CGI_10024494; scaffold271 TRF Tandem_Repeat 680798 680866 59 + . . scaffold271 GLEAN mRNA 781080 781913 0.988234 - . ID=CGI_10024495; scaffold271 WUBlastX LTR_Gypsy 781080 781913 48 - . . scaffold271 GLEAN mRNA 780894 781784 0.988234 - . ID=CGI_10024495; scaffold271 WUBlastX LTR_Copia 780894 781784 33 - . . scaffold271 GLEAN mRNA 781158 781850 0.988234 - . ID=CGI_10024495; scaffold271 WUBlastX LTR_Gypsy-Cigr 781158 781850 170 - . . scaffold271 GLEAN mRNA 810316 810397 0.997113 - . ID=CGI_10024500; scaffold271 TRF Tandem_Repeat 810316 810397 67 + . . scaffold271 GLEAN mRNA 810360 810421 0.997113 - . ID=CGI_10024500; scaffold271 TRF Tandem_Repeat 810360 810421 88 + . . scaffold271 GLEAN mRNA 811135 811227 0.997113 - . ID=CGI_10024500; scaffold271 TRF Tandem_Repeat 811135 811227 107 + . . scaffold271 GLEAN mRNA 825357 825392 0.997113 - . ID=CGI_10024500; scaffold271 TRF Tandem_Repeat 825357 825392 63 + . . scaffold271 GLEAN mRNA 831686 832177 0.997113 - . ID=CGI_10024500; scaffold271 WUBlastX LINE_RTE-X 831686 832177 183 - . . scaffold271 GLEAN mRNA 830367 830684 0.997113 - . ID=CGI_10024500; scaffold271 WUBlastX DNA_Harbinger 830367 830684 98 - . . scaffold271 GLEAN mRNA 832126 832254 0.997113 - . ID=CGI_10024500; scaffold271 WUBlastX LINE_RTE-X 832126 832254 25 - . . scaffold271 GLEAN mRNA 848105 848226 0.997113 - . ID=CGI_10024500; scaffold271 TRF Tandem_Repeat 848105 848226 70 + . . scaffold271 GLEAN mRNA 842746 842949 0.997113 - . ID=CGI_10024500; scaffold271 WUBlastX DNA_Zator 842746 842949 76 - . . scaffold271 GLEAN mRNA 848105 848226 0.51616 + . ID=CGI_10024501; scaffold271 TRF Tandem_Repeat 848105 848226 70 + . . scaffold271 GLEAN mRNA 842746 842949 0.51616 + . ID=CGI_10024501; scaffold271 WUBlastX DNA_Zator 842746 842949 76 - . . scaffold1097 GLEAN mRNA 231823 231858 0.686153 - . ID=CGI_10024512; scaffold1097 TRF Tandem_Repeat 231823 231858 72 + . . scaffold1097 GLEAN mRNA 232049 232303 0.686153 - . ID=CGI_10024512; scaffold1097 WUBlastX LINE_L1-Tx1 232049 232303 30 - . . scaffold1097 GLEAN mRNA 232022 232330 0.686153 - . ID=CGI_10024512; scaffold1097 WUBlastX LINE_L1-Tx1 232022 232330 24 - . . scaffold1097 GLEAN mRNA 271323 271366 1 + . ID=CGI_10024516; scaffold1097 TRF Tandem_Repeat 271323 271366 88 + . . scaffold1097 GLEAN mRNA 280676 280726 1 + . ID=CGI_10024518; scaffold1097 TRF Tandem_Repeat 280676 280726 63 + . . scaffold1097 GLEAN mRNA 343727 343759 0.869647 + . ID=CGI_10024523; scaffold1097 TRF Tandem_Repeat 343727 343759 57 + . . scaffold1097 GLEAN mRNA 351463 351510 1 - . ID=CGI_10024524; scaffold1097 TRF Tandem_Repeat 351463 351510 96 + . . scaffold1097 GLEAN mRNA 352414 352449 1 - . ID=CGI_10024524; scaffold1097 TRF Tandem_Repeat 352414 352449 72 + . . scaffold1097 GLEAN mRNA 378626 378669 0.996819 + . ID=CGI_10024526; scaffold1097 TRF Tandem_Repeat 378626 378669 52 + . . scaffold1097 GLEAN mRNA 390999 391517 1 + . ID=CGI_10024528; scaffold1097 TRF Tandem_Repeat 390999 391517 921 + . . scaffold1097 GLEAN mRNA 403297 403338 0.739463 - . ID=CGI_10024529; scaffold1097 TRF Tandem_Repeat 403297 403338 50 + . . scaffold1097 GLEAN mRNA 404535 405361 0.739463 - . ID=CGI_10024529; scaffold1097 TRF Tandem_Repeat 404535 405361 1219 + . . scaffold1097 GLEAN mRNA 417061 417765 0.739463 - . ID=CGI_10024529; scaffold1097 WUBlastX LINE_L1 417061 417765 139 - . . scaffold1097 GLEAN mRNA 417022 417900 0.739463 - . ID=CGI_10024529; scaffold1097 WUBlastX LINE_L1 417022 417900 36 - . . scaffold1097 GLEAN mRNA 441829 442594 0.999998 - . ID=CGI_10024531; scaffold1097 TRF Tandem_Repeat 441829 442594 1062 + . . scaffold1097 GLEAN mRNA 582168 582214 0.579339 - . ID=CGI_10024535; scaffold1097 TRF Tandem_Repeat 582168 582214 58 + . . scaffold1097 GLEAN mRNA 577982 578242 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 577982 578242 42 + . . scaffold1097 GLEAN mRNA 578318 578374 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 578318 578374 22 + . . scaffold1097 GLEAN mRNA 576231 576530 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 576231 576530 79 + . . scaffold1097 GLEAN mRNA 576359 577828 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 576359 577828 144 + . . scaffold1097 GLEAN mRNA 577004 577849 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 577004 577849 205 + . . scaffold1097 GLEAN mRNA 577862 578173 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 577862 578173 78 + . . scaffold1097 GLEAN mRNA 575785 576003 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 575785 576003 107 + . . scaffold1097 GLEAN mRNA 586169 586243 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 586169 586243 46 + . . scaffold1097 GLEAN mRNA 586234 586599 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 586234 586599 71 + . . scaffold1097 GLEAN mRNA 586109 586276 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 586109 586276 21 + . . scaffold1097 GLEAN mRNA 575649 575729 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 575649 575729 45 + . . scaffold1097 GLEAN mRNA 578431 578562 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 578431 578562 31 + . . scaffold1097 GLEAN mRNA 590444 590466 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX DNA_TcMar-Tc1 590444 590665 62 - . . scaffold1097 GLEAN mRNA 590390 590466 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX DNA_TcMar-Tc1 590390 590668 56 - . . scaffold1097 GLEAN mRNA 621323 621364 0.745797 - . ID=CGI_10024538; scaffold1097 TRF Tandem_Repeat 621323 621364 84 + . . scaffold1097 GLEAN mRNA 622657 622729 0.745797 - . ID=CGI_10024538; scaffold1097 TRF Tandem_Repeat 622657 622729 137 + . . scaffold1097 GLEAN mRNA 623520 623652 0.745797 - . ID=CGI_10024538; scaffold1097 TRF Tandem_Repeat 623520 623652 221 + . . scaffold1097 GLEAN mRNA 624451 624587 0.745797 - . ID=CGI_10024538; scaffold1097 TRF Tandem_Repeat 624451 624587 152 + . . scaffold1097 GLEAN mRNA 632185 632223 0.745797 - . ID=CGI_10024538; scaffold1097 TRF Tandem_Repeat 632185 632223 69 + . . scaffold1097 GLEAN mRNA 632178 632226 0.745797 - . ID=CGI_10024538; scaffold1097 TRF Tandem_Repeat 632178 632226 73 + . . scaffold1097 GLEAN mRNA 634715 634770 0.745797 - . ID=CGI_10024538; scaffold1097 TRF Tandem_Repeat 634715 634770 112 + . . scaffold1097 GLEAN mRNA 637129 637247 0.745797 - . ID=CGI_10024538; scaffold1097 TRF Tandem_Repeat 637129 637247 154 + . . scaffold1097 GLEAN mRNA 637540 637713 0.745797 - . ID=CGI_10024538; scaffold1097 TRF Tandem_Repeat 637540 637713 348 + . . scaffold1097 GLEAN mRNA 674405 674451 0.811238 + . ID=CGI_10024541; scaffold1097 TRF Tandem_Repeat 674405 674451 94 + . . scaffold1097 GLEAN mRNA 681329 681991 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_RTE-BovB 681329 681991 161 - . . scaffold1097 GLEAN mRNA 682613 682774 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_L1 682613 682774 23 - . . scaffold1097 GLEAN mRNA 683183 683386 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_RTE-BovB 683183 683386 82 - . . scaffold1097 GLEAN mRNA 683153 683311 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_RTE-BovB 683153 683311 88 - . . scaffold1097 GLEAN mRNA 682490 682747 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_RTE-BovB 682490 682747 61 - . . scaffold1097 GLEAN mRNA 683079 683210 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_RTE-BovB 683079 683210 57 - . . scaffold1097 GLEAN mRNA 682203 682691 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_L1 682203 682691 111 - . . scaffold1097 GLEAN mRNA 682176 682595 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_RTE-BovB 682176 682595 349 - . . scaffold1097 GLEAN mRNA 683186 683347 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_RTE-BovB 683186 683347 87 - . . scaffold1097 GLEAN mRNA 682786 683061 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_RTE-BovB 682786 683061 116 - . . scaffold1097 GLEAN mRNA 682060 682173 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_RTE-BovB 682060 682173 60 - . . scaffold1097 GLEAN mRNA 683204 683470 0.811238 + . ID=CGI_10024541; scaffold1097 WUBlastX LINE_RTE-BovB 683204 683470 47 - . . scaffold1097 GLEAN mRNA 707828 707876 0.99504 - . ID=CGI_10024542; scaffold1097 TRF Tandem_Repeat 707828 707876 98 + . . scaffold1097 GLEAN mRNA 707940 708002 0.99504 - . ID=CGI_10024542; scaffold1097 TRF Tandem_Repeat 707940 708002 126 + . . scaffold1097 GLEAN mRNA 715856 715914 0.99504 - . ID=CGI_10024542; scaffold1097 TRF Tandem_Repeat 715856 715914 63 + . . scaffold1097 GLEAN mRNA 715849 715924 0.99504 - . ID=CGI_10024542; scaffold1097 TRF Tandem_Repeat 715849 715924 68 + . . scaffold1097 GLEAN mRNA 715856 715922 0.99504 - . ID=CGI_10024542; scaffold1097 TRF Tandem_Repeat 715856 715922 64 + . . scaffold1097 GLEAN mRNA 715860 715921 0.99504 - . ID=CGI_10024542; scaffold1097 TRF Tandem_Repeat 715860 715921 61 + . . scaffold1097 GLEAN mRNA 712094 712612 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-BovB 712094 712612 318 + . . scaffold1097 GLEAN mRNA 712602 713060 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-BovB 712602 713060 482 + . . scaffold1097 GLEAN mRNA 713066 713845 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-BovB 713066 713845 452 + . . scaffold1097 GLEAN mRNA 713820 714500 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-BovB 713820 714500 673 + . . scaffold1097 GLEAN mRNA 717557 717940 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-X 717557 717940 22 - . . scaffold1097 GLEAN mRNA 717740 718000 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-X 717740 718000 102 - . . scaffold1097 GLEAN mRNA 718009 718314 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-X 718009 718314 105 - . . scaffold1097 GLEAN mRNA 712004 712180 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-BovB 712004 712180 84 + . . scaffold1097 GLEAN mRNA 712031 712192 0.99504 - . ID=CGI_10024542; scaffold1097 WUBlastX LINE_RTE-BovB 712031 712192 114 + . . scaffold1097 GLEAN mRNA 727824 727867 0.540728 + . ID=CGI_10024543; scaffold1097 TRF Tandem_Repeat 727824 727867 88 + . . scaffold1097 GLEAN mRNA 731471 731526 0.540728 + . ID=CGI_10024543; scaffold1097 TRF Tandem_Repeat 731471 731526 112 + . . scaffold1097 GLEAN mRNA 746399 746431 0.99818 - . ID=CGI_10024544; scaffold1097 TRF Tandem_Repeat 746399 746431 57 + . . scaffold1097 GLEAN mRNA 766018 766445 1 - . ID=CGI_10024547; scaffold1097 TRF Tandem_Repeat 766018 766445 678 + . . scaffold1097 GLEAN mRNA 766018 767164 1 - . ID=CGI_10024547; scaffold1097 TRF Tandem_Repeat 766018 767164 1630 + . . scaffold1097 GLEAN mRNA 766018 767164 1 - . ID=CGI_10024547; scaffold1097 TRF Tandem_Repeat 766018 767164 1668 + . . scaffold1097 GLEAN mRNA 766449 767164 1 - . ID=CGI_10024547; scaffold1097 TRF Tandem_Repeat 766449 767164 1101 + . . scaffold1097 GLEAN mRNA 772589 773413 0.777738 + . ID=CGI_10024548; scaffold1097 TRF Tandem_Repeat 772589 773413 1035 + . . scaffold1097 GLEAN mRNA 781811 781877 1 - . ID=CGI_10024549; scaffold1097 TRF Tandem_Repeat 781811 781877 127 + . . scaffold1097 GLEAN mRNA 784459 784548 1 - . ID=CGI_10024549; scaffold1097 TRF Tandem_Repeat 784459 784548 82 + . . scaffold1097 GLEAN mRNA 796685 796759 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 796685 796759 46 + . . scaffold1097 GLEAN mRNA 796801 797208 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 796801 797208 20 + . . scaffold1097 GLEAN mRNA 797746 797946 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 797746 797946 22 + . . scaffold1097 GLEAN mRNA 797312 797470 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 797312 797470 56 + . . scaffold1097 GLEAN mRNA 797549 797707 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 797549 797707 56 + . . scaffold1097 GLEAN mRNA 796658 796750 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 796658 796750 41 + . . scaffold1097 GLEAN mRNA 796960 797088 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 796960 797088 51 + . . scaffold1097 GLEAN mRNA 796933 797088 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 796933 797088 26 + . . scaffold1097 GLEAN mRNA 797282 797473 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 797282 797473 30 + . . scaffold1097 GLEAN mRNA 797519 797710 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 797519 797710 30 + . . scaffold1097 GLEAN mRNA 796960 797379 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 796960 797379 22 + . . scaffold1097 GLEAN mRNA 797746 797889 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 797746 797889 44 + . . scaffold1097 GLEAN mRNA 803175 803354 0.99881 - . ID=CGI_10024551; scaffold1097 TRF Tandem_Repeat 803175 803354 330 + . . scaffold1097 GLEAN mRNA 848317 848356 0.999116 + . ID=CGI_10024555; scaffold1097 TRF Tandem_Repeat 848317 848356 80 + . . scaffold1097 GLEAN mRNA 854901 855441 0.999116 + . ID=CGI_10024555; scaffold1097 TRF Tandem_Repeat 854901 855441 581 + . . scaffold1097 GLEAN mRNA 854901 855442 0.999116 + . ID=CGI_10024555; scaffold1097 TRF Tandem_Repeat 854901 855442 684 + . . scaffold1097 GLEAN mRNA 857652 857831 0.999116 + . ID=CGI_10024555; scaffold1097 TRF Tandem_Repeat 857652 857831 112 + . . scaffold1097 GLEAN mRNA 857631 857835 0.999116 + . ID=CGI_10024555; scaffold1097 TRF Tandem_Repeat 857631 857835 158 + . . scaffold1097 GLEAN mRNA 862480 863040 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy-Cigr 862480 863040 137 + . . scaffold1097 GLEAN mRNA 862480 863232 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 862480 863232 123 + . . scaffold1097 GLEAN mRNA 863298 863597 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 863298 863597 20 + . . scaffold1097 GLEAN mRNA 861518 861784 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 861518 861784 102 + . . scaffold1097 GLEAN mRNA 860173 860310 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 860173 860310 23 + . . scaffold1097 GLEAN mRNA 861771 862169 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 861771 862169 123 + . . scaffold1097 GLEAN mRNA 862264 862935 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 862264 862935 133 + . . scaffold1097 GLEAN mRNA 860522 860620 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 860522 860620 22 + . . scaffold1097 GLEAN mRNA 860531 860614 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 860531 860614 23 + . . scaffold1097 GLEAN mRNA 860831 861721 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 860831 861721 293 + . . scaffold1097 GLEAN mRNA 862489 862953 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 862489 862953 165 + . . scaffold1097 GLEAN mRNA 863337 863507 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 863337 863507 37 + . . scaffold1097 GLEAN mRNA 861771 862253 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 861771 862253 68 + . . scaffold1097 GLEAN mRNA 862384 862938 0.999116 + . ID=CGI_10024555; scaffold1097 WUBlastX LTR_Gypsy 862384 862938 162 + . . scaffold1097 GLEAN mRNA 873907 873948 0.999675 + . ID=CGI_10024556; scaffold1097 TRF Tandem_Repeat 873907 873948 84 + . . scaffold1097 GLEAN mRNA 878456 878523 1 + . ID=CGI_10024557; scaffold1097 TRF Tandem_Repeat 878456 878523 136 + . . scaffold1097 GLEAN mRNA 880371 880517 1 + . ID=CGI_10024557; scaffold1097 TRF Tandem_Repeat 880371 880517 125 + . . scaffold1097 GLEAN mRNA 880808 881508 1 + . ID=CGI_10024557; scaffold1097 TRF Tandem_Repeat 880808 881508 955 + . . scaffold280 GLEAN mRNA 8390 8441 1 - . ID=CGI_10024562; scaffold280 TRF Tandem_Repeat 8390 8441 104 + . . scaffold280 GLEAN mRNA 25025 25086 0.522936 - . ID=CGI_10024564; scaffold280 TRF Tandem_Repeat 25025 25086 124 + . . scaffold280 GLEAN mRNA 27659 27716 0.522936 - . ID=CGI_10024564; scaffold280 TRF Tandem_Repeat 27659 27716 70 + . . scaffold280 GLEAN mRNA 28272 28449 0.522936 - . ID=CGI_10024564; scaffold280 TRF Tandem_Repeat 28272 28449 94 + . . scaffold280 GLEAN mRNA 29357 29466 0.522936 - . ID=CGI_10024564; scaffold280 TRF Tandem_Repeat 29357 29466 98 + . . scaffold280 GLEAN mRNA 32666 32692 0.522936 - . ID=CGI_10024564; scaffold280 TRF Tandem_Repeat 32666 32692 54 + . . scaffold280 GLEAN mRNA 36228 36301 0.522936 - . ID=CGI_10024564; scaffold280 TRF Tandem_Repeat 36228 36301 121 + . . scaffold280 GLEAN mRNA 66509 68119 0.381674 - . ID=CGI_10024566; scaffold280 TRF Tandem_Repeat 66509 68119 2192 + . . scaffold280 GLEAN mRNA 66548 68119 0.381674 - . ID=CGI_10024566; scaffold280 TRF Tandem_Repeat 66548 68119 2206 + . . scaffold280 GLEAN mRNA 68155 68190 0.381674 - . ID=CGI_10024566; scaffold280 TRF Tandem_Repeat 68155 68190 56 + . . scaffold280 GLEAN mRNA 99579 99607 0.734569 - . ID=CGI_10024568; scaffold280 TRF Tandem_Repeat 99579 99607 51 + . . scaffold280 GLEAN mRNA 169995 170195 0.651129 + . ID=CGI_10024573; scaffold280 TRF Tandem_Repeat 169995 170195 185 + . . scaffold280 GLEAN mRNA 244769 244812 1 + . ID=CGI_10024580; scaffold280 TRF Tandem_Repeat 244769 244812 79 + . . scaffold280 GLEAN mRNA 251803 251855 0.999851 + . ID=CGI_10024581; scaffold280 TRF Tandem_Repeat 251803 251855 90 + . . scaffold280 GLEAN mRNA 281538 281576 0.573181 + . ID=CGI_10024583; scaffold280 TRF Tandem_Repeat 281538 281576 78 + . . scaffold280 GLEAN mRNA 285733 285771 0.573181 + . ID=CGI_10024583; scaffold280 TRF Tandem_Repeat 285733 285771 78 + . . scaffold280 GLEAN mRNA 291919 292087 0.573181 + . ID=CGI_10024583; scaffold280 TRF Tandem_Repeat 291919 292087 144 + . . scaffold280 GLEAN mRNA 417094 417139 0.882829 - . ID=CGI_10024589; scaffold280 TRF Tandem_Repeat 417094 417139 92 + . . scaffold280 GLEAN mRNA 427512 427567 0.544833 - . ID=CGI_10024590; scaffold280 TRF Tandem_Repeat 427512 427567 112 + . . scaffold280 GLEAN mRNA 472282 472415 0.999996 - . ID=CGI_10024591; scaffold280 TRF Tandem_Repeat 472282 472415 196 + . . scaffold280 GLEAN mRNA 476484 476528 0.999996 - . ID=CGI_10024591; scaffold280 TRF Tandem_Repeat 476484 476528 90 + . . scaffold280 GLEAN mRNA 477066 477113 0.999996 - . ID=CGI_10024591; scaffold280 TRF Tandem_Repeat 477066 477113 96 + . . scaffold280 GLEAN mRNA 568788 568950 0.999996 - . ID=CGI_10024594; scaffold280 TRF Tandem_Repeat 568788 568950 147 + . . scaffold280 GLEAN mRNA 569947 570192 0.999996 - . ID=CGI_10024594; scaffold280 TRF Tandem_Repeat 569947 570192 420 + . . scaffold280 GLEAN mRNA 588779 588994 0.977964 - . ID=CGI_10024596; scaffold280 WUBlastX LINE_CR1 588779 588994 20 - . . scaffold280 GLEAN mRNA 588936 589466 0.977964 - . ID=CGI_10024596; scaffold280 WUBlastX LINE_L2 588936 589466 229 - . . scaffold280 GLEAN mRNA 581977 584439 0.977964 - . ID=CGI_10024596; scaffold280 WUBlastX LINE_L2 581977 584439 1203 - . . scaffold280 GLEAN mRNA 589113 589568 0.977964 - . ID=CGI_10024596; scaffold280 WUBlastX LINE_CR1-L2 589113 589568 204 - . . scaffold280 GLEAN mRNA 590208 590663 0.977964 - . ID=CGI_10024596; scaffold280 WUBlastX LINE_CR1-L2 590208 590663 247 - . . scaffold280 GLEAN mRNA 590196 590813 0.977964 - . ID=CGI_10024596; scaffold280 WUBlastX LINE_L1 590196 590813 51 - . . scaffold280 GLEAN mRNA 590115 590663 0.977964 - . ID=CGI_10024596; scaffold280 WUBlastX LINE_L1 590115 590663 59 - . . scaffold280 GLEAN mRNA 602022 602049 0.816312 - . ID=CGI_10024598; scaffold280 TRF Tandem_Repeat 602022 602049 56 + . . scaffold280 GLEAN mRNA 605141 605218 0.816312 - . ID=CGI_10024598; scaffold280 TRF Tandem_Repeat 605141 605218 156 + . . scaffold280 GLEAN mRNA 605235 605264 0.816312 - . ID=CGI_10024598; scaffold280 TRF Tandem_Repeat 605235 605264 60 + . . scaffold280 GLEAN mRNA 615017 615134 1 - . ID=CGI_10024599; scaffold280 TRF Tandem_Repeat 615017 615606 824 + . . scaffold280 GLEAN mRNA 615100 615456 1 + . ID=CGI_10024600; scaffold280 TRF Tandem_Repeat 615017 615606 824 + . . scaffold280 GLEAN mRNA 649597 649971 0.996424 - . ID=CGI_10024601; scaffold280 WUBlastX LTR_DIRS 649597 649971 96 + . . scaffold280 GLEAN mRNA 649684 650010 0.996424 - . ID=CGI_10024601; scaffold280 WUBlastX LTR_DIRS 649684 650010 138 + . . scaffold280 GLEAN mRNA 696902 696931 0.731079 - . ID=CGI_10024602; scaffold280 TRF Tandem_Repeat 696902 696931 60 + . . scaffold280 GLEAN mRNA 700371 700423 0.731079 - . ID=CGI_10024602; scaffold280 TRF Tandem_Repeat 700371 700423 106 + . . scaffold280 GLEAN mRNA 700468 700506 0.731079 - . ID=CGI_10024602; scaffold280 TRF Tandem_Repeat 700468 700506 78 + . . scaffold280 GLEAN mRNA 695453 695968 0.731079 - . ID=CGI_10024602; scaffold280 WUBlastX LTR_ERV1 695453 695968 37 - . . scaffold280 GLEAN mRNA 716058 716140 0.731079 - . ID=CGI_10024602; scaffold280 TRF Tandem_Repeat 716058 716140 130 + . . scaffold280 GLEAN mRNA 716851 716890 0.731079 - . ID=CGI_10024602; scaffold280 TRF Tandem_Repeat 716851 716890 53 + . . scaffold280 GLEAN mRNA 716851 716886 0.731079 - . ID=CGI_10024602; scaffold280 TRF Tandem_Repeat 716851 716886 63 + . . scaffold280 GLEAN mRNA 718605 718682 0.731079 - . ID=CGI_10024602; scaffold280 TRF Tandem_Repeat 718605 718682 149 + . . scaffold280 GLEAN mRNA 721097 721136 0.999161 - . ID=CGI_10024604; scaffold280 TRF Tandem_Repeat 721097 721136 80 + . . scaffold280 GLEAN mRNA 721464 721508 0.999161 - . ID=CGI_10024604; scaffold280 TRF Tandem_Repeat 721464 721508 81 + . . scaffold280 GLEAN mRNA 748327 748667 0.948252 + . ID=CGI_10024607; scaffold280 TRF Tandem_Repeat 748327 748667 538 + . . scaffold280 GLEAN mRNA 765733 765806 0.80135 - . ID=CGI_10024609; scaffold280 TRF Tandem_Repeat 765733 765806 130 + . . scaffold280 GLEAN mRNA 934376 934411 0.999996 - . ID=CGI_10024612; scaffold280 TRF Tandem_Repeat 934376 934411 72 + . . scaffold79 GLEAN mRNA 180750 180972 0.994376 + . ID=CGI_10024616; scaffold79 TRF Tandem_Repeat 180750 180972 383 + . . scaffold79 GLEAN mRNA 189612 189743 0.994376 + . ID=CGI_10024616; scaffold79 TRF Tandem_Repeat 189612 189743 112 + . . scaffold79 GLEAN mRNA 189605 189827 0.994376 + . ID=CGI_10024616; scaffold79 TRF Tandem_Repeat 189605 189827 188 + . . scaffold79 GLEAN mRNA 189606 189744 0.994376 + . ID=CGI_10024616; scaffold79 TRF Tandem_Repeat 189606 189744 95 + . . scaffold79 GLEAN mRNA 192152 192201 0.994376 + . ID=CGI_10024616; scaffold79 TRF Tandem_Repeat 192152 192201 91 + . . scaffold79 GLEAN mRNA 209535 209623 0.544852 + . ID=CGI_10024618; scaffold79 TRF Tandem_Repeat 209535 209623 72 + . . scaffold79 GLEAN mRNA 209534 209615 0.544852 + . ID=CGI_10024618; scaffold79 TRF Tandem_Repeat 209534 209615 52 + . . scaffold79 GLEAN mRNA 212710 212859 0.544852 + . ID=CGI_10024618; scaffold79 WUBlastX LINE_RTE-X 212710 212859 26 - . . scaffold79 GLEAN mRNA 259924 259949 0.644901 + . ID=CGI_10024620; scaffold79 TRF Tandem_Repeat 259924 259949 52 + . . scaffold79 GLEAN mRNA 261216 261521 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX DNA_TcMar-Tc1 261216 261521 66 - . . scaffold79 GLEAN mRNA 261611 261952 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX DNA_TcMar-Tc1 261611 261952 67 - . . scaffold79 GLEAN mRNA 257530 257667 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX DNA_Harbinger 257530 257667 33 + . . scaffold79 GLEAN mRNA 257455 257634 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX DNA_Harbinger 257455 257634 84 + . . scaffold79 GLEAN mRNA 257413 257628 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX DNA_Harbinger 257413 257628 20 + . . scaffold79 GLEAN mRNA 257691 258185 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX DNA_Harbinger 257691 258185 179 + . . scaffold79 GLEAN mRNA 261611 262045 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX DNA_TcMar-Tc1 261611 262045 47 - . . scaffold79 GLEAN mRNA 263163 263486 0.644901 + . ID=CGI_10024620; scaffold79 TRF Tandem_Repeat 263163 263486 259 + . . scaffold79 GLEAN mRNA 263163 263274 0.644901 + . ID=CGI_10024620; scaffold79 TRF Tandem_Repeat 263163 263274 145 + . . scaffold79 GLEAN mRNA 263313 263423 0.644901 + . ID=CGI_10024620; scaffold79 TRF Tandem_Repeat 263313 263423 127 + . . scaffold79 GLEAN mRNA 269824 269870 0.644901 + . ID=CGI_10024620; scaffold79 TRF Tandem_Repeat 269824 269870 58 + . . scaffold79 GLEAN mRNA 266082 266357 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX LINE_RTE-X 266082 266357 66 + . . scaffold79 GLEAN mRNA 266070 266399 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX LINE_RTE-X 266070 266399 47 + . . scaffold79 GLEAN mRNA 266088 266270 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX LINE_RTE-X 266088 266270 93 + . . scaffold79 GLEAN mRNA 265873 266067 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX LINE_RTE-X 265873 266067 41 + . . scaffold79 GLEAN mRNA 262141 262328 0.644901 + . ID=CGI_10024620; scaffold79 TRF Tandem_Repeat 262141 262328 190 + . . scaffold79 GLEAN mRNA 316993 317069 0.799666 + . ID=CGI_10024624; scaffold79 TRF Tandem_Repeat 316993 317069 93 + . . scaffold79 GLEAN mRNA 317083 318044 0.799666 + . ID=CGI_10024624; scaffold79 TRF Tandem_Repeat 317083 318044 1456 + . . scaffold79 GLEAN mRNA 324843 324883 0.799666 + . ID=CGI_10024624; scaffold79 TRF Tandem_Repeat 324843 324883 82 + . . scaffold79 GLEAN mRNA 326659 326954 0.799666 + . ID=CGI_10024624; scaffold79 TRF Tandem_Repeat 326659 326954 359 + . . scaffold79 GLEAN mRNA 326652 327147 0.799666 + . ID=CGI_10024624; scaffold79 TRF Tandem_Repeat 326652 327147 256 + . . scaffold79 GLEAN mRNA 385583 385626 0.799666 + . ID=CGI_10024624; scaffold79 TRF Tandem_Repeat 385583 385626 88 + . . scaffold79 GLEAN mRNA 386490 387433 0.799666 + . ID=CGI_10024624; scaffold79 TRF Tandem_Repeat 386490 387433 1816 + . . scaffold79 GLEAN mRNA 408598 408659 1 + . ID=CGI_10024626; scaffold79 TRF Tandem_Repeat 408598 408659 108 + . . scaffold79 GLEAN mRNA 424384 424414 0.615036 + . ID=CGI_10024627; scaffold79 TRF Tandem_Repeat 424384 424414 62 + . . scaffold79 GLEAN mRNA 424354 424440 0.615036 + . ID=CGI_10024627; scaffold79 TRF Tandem_Repeat 424354 424440 79 + . . scaffold79 GLEAN mRNA 424384 424414 1 - . ID=CGI_10024628; scaffold79 TRF Tandem_Repeat 424384 424414 62 + . . scaffold79 GLEAN mRNA 424354 424440 1 - . ID=CGI_10024628; scaffold79 TRF Tandem_Repeat 424354 424440 79 + . . scaffold79 GLEAN mRNA 435558 435584 0.999917 - . ID=CGI_10024629; scaffold79 TRF Tandem_Repeat 435558 435584 54 + . . scaffold79 GLEAN mRNA 438301 438336 0.999917 - . ID=CGI_10024629; scaffold79 TRF Tandem_Repeat 438301 438336 72 + . . scaffold79 GLEAN mRNA 521281 521341 1 - . ID=CGI_10024633; scaffold79 TRF Tandem_Repeat 521281 521341 113 + . . scaffold79 GLEAN mRNA 551177 551223 1 - . ID=CGI_10024635; scaffold79 TRF Tandem_Repeat 551177 551223 67 + . . scaffold79 GLEAN mRNA 582820 582850 0.999064 + . ID=CGI_10024637; scaffold79 TRF Tandem_Repeat 582820 582850 62 + . . scaffold79 GLEAN mRNA 623071 623103 0.995957 + . ID=CGI_10024639; scaffold79 TRF Tandem_Repeat 623071 623103 66 + . . scaffold79 GLEAN mRNA 624935 624983 0.995957 + . ID=CGI_10024639; scaffold79 TRF Tandem_Repeat 624935 624983 98 + . . scaffold79 GLEAN mRNA 677098 677902 0.999999 + . ID=CGI_10024642; scaffold79 TRF Tandem_Repeat 677098 677902 1193 + . . scaffold79 GLEAN mRNA 750658 750722 0.76653 + . ID=CGI_10024644; scaffold79 TRF Tandem_Repeat 750658 750722 121 + . . scaffold79 GLEAN mRNA 761573 761654 0.562597 + . ID=CGI_10024645; scaffold79 TRF Tandem_Repeat 761573 761654 155 + . . scaffold79 GLEAN mRNA 775808 775987 0.85926 - . ID=CGI_10024646; scaffold79 TRF Tandem_Repeat 775808 775987 141 + . . scaffold79 GLEAN mRNA 775839 776054 0.85926 - . ID=CGI_10024646; scaffold79 TRF Tandem_Repeat 775839 776054 190 + . . scaffold79 GLEAN mRNA 781563 781592 0.85926 - . ID=CGI_10024646; scaffold79 TRF Tandem_Repeat 781563 781592 51 + . . scaffold79 GLEAN mRNA 795655 795696 0.85926 - . ID=CGI_10024646; scaffold79 TRF Tandem_Repeat 795655 795696 84 + . . scaffold79 GLEAN mRNA 796376 796411 0.85926 - . ID=CGI_10024646; scaffold79 TRF Tandem_Repeat 796376 796411 72 + . . scaffold79 GLEAN mRNA 807401 807451 0.85926 - . ID=CGI_10024646; scaffold79 TRF Tandem_Repeat 807401 807451 102 + . . scaffold79 GLEAN mRNA 818960 819022 0.85926 - . ID=CGI_10024646; scaffold79 TRF Tandem_Repeat 818960 819022 126 + . . scaffold79 GLEAN mRNA 775808 775987 0.592864 + . ID=CGI_10024647; scaffold79 TRF Tandem_Repeat 775808 775987 141 + . . scaffold79 GLEAN mRNA 775839 776054 0.592864 + . ID=CGI_10024647; scaffold79 TRF Tandem_Repeat 775839 776054 190 + . . scaffold79 GLEAN mRNA 845195 845320 0.999674 - . ID=CGI_10024651; scaffold79 TRF Tandem_Repeat 845195 845320 76 + . . scaffold79 GLEAN mRNA 845319 845489 0.999674 - . ID=CGI_10024651; scaffold79 TRF Tandem_Repeat 845319 845489 171 + . . scaffold79 GLEAN mRNA 846194 846265 0.999674 - . ID=CGI_10024651; scaffold79 TRF Tandem_Repeat 846194 846265 135 + . . scaffold79 GLEAN mRNA 873586 873705 0.999287 - . ID=CGI_10024652; scaffold79 WUBlastX DNA_TcMar-IS885 873586 873705 22 - . . scaffold79 GLEAN mRNA 873281 873499 0.999287 - . ID=CGI_10024652; scaffold79 WUBlastX DNA_TcMar-Tc1 873281 873499 47 - . . scaffold79 GLEAN mRNA 873314 873559 0.999287 - . ID=CGI_10024652; scaffold79 WUBlastX DNA_TcMar-Tc1 873314 873559 25 - . . scaffold79 GLEAN mRNA 872781 873314 0.999287 - . ID=CGI_10024652; scaffold79 WUBlastX DNA_TcMar-Tc1 872781 873314 299 - . . scaffold79 GLEAN mRNA 883829 883890 1 + . ID=CGI_10024653; scaffold79 TRF Tandem_Repeat 883829 883890 72 + . . scaffold79 GLEAN mRNA 883829 883890 1 + . ID=CGI_10024653; scaffold79 TRF Tandem_Repeat 883829 883890 90 + . . scaffold79 GLEAN mRNA 886758 887360 1 + . ID=CGI_10024653; scaffold79 WUBlastX LINE_L1-Tx1 886758 887360 35 - . . scaffold79 GLEAN mRNA 886641 887588 1 + . ID=CGI_10024653; scaffold79 WUBlastX LINE_L1-Tx1 886641 887588 20 - . . scaffold79 GLEAN mRNA 900684 900772 0.999978 + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 900684 900772 56 + . . scaffold79 GLEAN mRNA 900609 900836 0.999978 + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 900609 900836 97 + . . scaffold79 GLEAN mRNA 900950 901048 0.999978 + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 900950 901048 78 + . . scaffold79 GLEAN mRNA 901278 901359 0.999978 + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 901278 901359 78 + . . scaffold79 GLEAN mRNA 901511 901576 0.999978 + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 901511 901576 57 + . . scaffold79 GLEAN mRNA 901623 901710 0.999978 + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 901623 901710 56 + . . scaffold79 GLEAN mRNA 901655 901759 0.999978 + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 901655 901759 56 + . . scaffold79 GLEAN mRNA 901938 901995 0.999978 + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 901938 901995 59 + . . scaffold469 GLEAN mRNA 69927 69980 0.99227 - . ID=CGI_10024665; scaffold469 TRF Tandem_Repeat 69927 69980 101 + . . scaffold469 GLEAN mRNA 99651 99970 0.999046 - . ID=CGI_10024667; scaffold469 TRF Tandem_Repeat 99651 99970 225 + . . scaffold469 GLEAN mRNA 99645 99970 0.999046 - . ID=CGI_10024667; scaffold469 TRF Tandem_Repeat 99645 99970 331 + . . scaffold469 GLEAN mRNA 99651 99960 0.999046 - . ID=CGI_10024667; scaffold469 TRF Tandem_Repeat 99651 99960 294 + . . scaffold469 GLEAN mRNA 104928 105785 1 - . ID=CGI_10024668; scaffold469 TRF Tandem_Repeat 104928 105785 1177 + . . scaffold469 GLEAN mRNA 105792 105827 1 - . ID=CGI_10024668; scaffold469 TRF Tandem_Repeat 105792 105827 54 + . . scaffold469 GLEAN mRNA 105796 105826 1 - . ID=CGI_10024668; scaffold469 TRF Tandem_Repeat 105796 105826 53 + . . scaffold469 GLEAN mRNA 107063 107728 1 - . ID=CGI_10024668; scaffold469 WUBlastX DNA_hAT 107063 107755 131 - . . scaffold469 GLEAN mRNA 151307 152074 0.988922 - . ID=CGI_10024669; scaffold469 WUBlastX LTR_Pao 151307 152074 694 - . . scaffold469 GLEAN mRNA 152073 153203 0.988922 - . ID=CGI_10024669; scaffold469 WUBlastX LTR_Pao 152073 153203 813 - . . scaffold469 GLEAN mRNA 346341 346448 0.967462 - . ID=CGI_10024673; scaffold469 WUBlastX LTR_ERVK 346341 346448 40 - . . scaffold469 GLEAN mRNA 409473 409645 0.842627 - . ID=CGI_10024677; scaffold469 TRF Tandem_Repeat 409473 409645 161 + . . scaffold469 GLEAN mRNA 415907 415942 1 + . ID=CGI_10024679; scaffold469 TRF Tandem_Repeat 415907 415942 72 + . . scaffold469 GLEAN mRNA 602085 602297 1 + . ID=CGI_10024688; scaffold469 WUBlastX DNA_P 602085 602297 28 + . . scaffold469 GLEAN mRNA 613325 613363 1 + . ID=CGI_10024688; scaffold469 TRF Tandem_Repeat 613325 613363 78 + . . scaffold469 GLEAN mRNA 602085 602297 0.999676 - . ID=CGI_10024689; scaffold469 WUBlastX DNA_P 602085 602297 28 + . . scaffold469 GLEAN mRNA 621095 621472 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 621095 621472 317 - . . scaffold469 GLEAN mRNA 621566 622261 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 621566 622261 193 - . . scaffold469 GLEAN mRNA 621467 621871 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 621467 621871 134 - . . scaffold469 GLEAN mRNA 621539 622150 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 621539 622150 345 - . . scaffold469 GLEAN mRNA 620632 621081 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 620632 621081 85 - . . scaffold469 GLEAN mRNA 622239 622523 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 622239 622523 148 - . . scaffold469 GLEAN mRNA 631744 631791 0.99956 + . ID=CGI_10024690; scaffold469 TRF Tandem_Repeat 631744 631791 96 + . . scaffold469 GLEAN mRNA 634624 634670 0.99956 + . ID=CGI_10024690; scaffold469 TRF Tandem_Repeat 634624 634670 53 + . . scaffold469 GLEAN mRNA 624167 624739 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 624167 624739 456 + . . scaffold469 GLEAN mRNA 622979 623332 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 622979 623332 144 + . . scaffold469 GLEAN mRNA 623338 623568 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 623338 623568 126 + . . scaffold469 GLEAN mRNA 623577 624167 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 623577 624167 124 + . . scaffold469 GLEAN mRNA 623550 624077 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 623550 624077 372 + . . scaffold469 GLEAN mRNA 623045 623326 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 623045 623326 154 + . . scaffold469 GLEAN mRNA 624712 625515 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 624712 625515 609 + . . scaffold469 GLEAN mRNA 622545 622973 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 622545 622973 352 + . . scaffold469 GLEAN mRNA 663886 663911 0.999998 + . ID=CGI_10024691; scaffold469 TRF Tandem_Repeat 663886 663911 52 + . . scaffold469 GLEAN mRNA 670219 670244 0.999998 + . ID=CGI_10024691; scaffold469 TRF Tandem_Repeat 670219 670244 52 + . . scaffold469 GLEAN mRNA 684570 684635 0.794331 - . ID=CGI_10024692; scaffold469 TRF Tandem_Repeat 684570 684635 98 + . . scaffold469 GLEAN mRNA 685515 685593 0.794331 - . ID=CGI_10024692; scaffold469 TRF Tandem_Repeat 685515 685593 56 + . . scaffold469 GLEAN mRNA 685620 685680 0.794331 - . ID=CGI_10024692; scaffold469 TRF Tandem_Repeat 685620 685680 59 + . . scaffold469 GLEAN mRNA 686987 688026 0.794331 - . ID=CGI_10024692; scaffold469 TRF Tandem_Repeat 686987 688026 1552 + . . scaffold469 GLEAN mRNA 692239 693073 0.794331 - . ID=CGI_10024692; scaffold469 TRF Tandem_Repeat 692239 693073 1546 + . . scaffold469 GLEAN mRNA 693078 693123 0.794331 - . ID=CGI_10024692; scaffold469 TRF Tandem_Repeat 693078 693123 74 + . . scaffold469 GLEAN mRNA 693078 693136 0.794331 - . ID=CGI_10024692; scaffold469 TRF Tandem_Repeat 693078 693136 64 + . . scaffold469 GLEAN mRNA 695818 696643 0.794331 - . ID=CGI_10024692; scaffold469 TRF Tandem_Repeat 695818 696643 1157 + . . scaffold469 GLEAN mRNA 700006 700057 0.794331 - . ID=CGI_10024692; scaffold469 TRF Tandem_Repeat 700006 700057 104 + . . scaffold469 GLEAN mRNA 695312 695599 0.794331 - . ID=CGI_10024692; scaffold469 WUBlastX LINE_L1-Tx1 695312 695599 44 + . . scaffold469 GLEAN mRNA 695282 695497 0.794331 - . ID=CGI_10024692; scaffold469 WUBlastX LINE_L1-Tx1 695282 695497 59 + . . scaffold469 GLEAN mRNA 825812 825843 1 - . ID=CGI_10024698; scaffold469 TRF Tandem_Repeat 825812 825843 64 + . . scaffold469 GLEAN mRNA 831903 831939 1 - . ID=CGI_10024698; scaffold469 TRF Tandem_Repeat 831903 831939 58 + . . scaffold469 GLEAN mRNA 827262 827612 1 - . ID=CGI_10024698; scaffold469 WUBlastX LINE_L2 827262 827612 30 - . . scaffold469 GLEAN mRNA 827361 827750 1 - . ID=CGI_10024698; scaffold469 WUBlastX LINE_CR1-L2 827361 827750 35 - . . scaffold469 GLEAN mRNA 841847 841880 1 - . ID=CGI_10024698; scaffold469 TRF Tandem_Repeat 841847 841880 68 + . . scaffold469 GLEAN mRNA 843233 843308 1 - . ID=CGI_10024698; scaffold469 TRF Tandem_Repeat 843233 843308 80 + . . scaffold469 GLEAN mRNA 927871 928071 0.564574 + . ID=CGI_10024703; scaffold469 WUBlastX LINE_CR1-L2 927871 928071 23 + . . scaffold469 GLEAN mRNA 928046 928261 0.564574 + . ID=CGI_10024703; scaffold469 WUBlastX LINE_CR1-L2 928046 928261 44 + . . scaffold469 GLEAN mRNA 940775 941043 0.564574 + . ID=CGI_10024703; scaffold469 TRF Tandem_Repeat 940775 941043 283 + . . scaffold469 GLEAN mRNA 936864 937904 0.564574 + . ID=CGI_10024703; scaffold469 WUBlastX LINE_RTE-X 936864 937904 452 - . . scaffold469 GLEAN mRNA 937614 937961 0.564574 + . ID=CGI_10024703; scaffold469 WUBlastX LINE_RTE-X 937614 937961 81 - . . scaffold780 GLEAN mRNA 21280 21328 0.913015 + . ID=CGI_10024708; scaffold780 TRF Tandem_Repeat 21280 21328 98 + . . scaffold780 GLEAN mRNA 38396 38450 0.99886 - . ID=CGI_10024709; scaffold780 TRF Tandem_Repeat 38396 38450 110 + . . scaffold780 GLEAN mRNA 39228 39257 0.99886 - . ID=CGI_10024709; scaffold780 TRF Tandem_Repeat 39228 39257 53 + . . scaffold780 GLEAN mRNA 58909 59010 0.999998 - . ID=CGI_10024711; scaffold780 TRF Tandem_Repeat 58909 59010 73 + . . scaffold780 GLEAN mRNA 59099 59464 0.999998 - . ID=CGI_10024711; scaffold780 TRF Tandem_Repeat 59099 59464 533 + . . scaffold780 GLEAN mRNA 62139 62189 0.999998 - . ID=CGI_10024711; scaffold780 TRF Tandem_Repeat 62139 62189 61 + . . scaffold780 GLEAN mRNA 62121 62189 0.999998 - . ID=CGI_10024711; scaffold780 TRF Tandem_Repeat 62121 62189 66 + . . scaffold780 GLEAN mRNA 62121 62189 0.999998 - . ID=CGI_10024711; scaffold780 TRF Tandem_Repeat 62121 62189 75 + . . scaffold780 GLEAN mRNA 91377 91850 0.414702 + . ID=CGI_10024713; scaffold780 TRF Tandem_Repeat 91377 91850 338 + . . scaffold780 GLEAN mRNA 91377 91822 0.414702 + . ID=CGI_10024713; scaffold780 TRF Tandem_Repeat 91377 91822 370 + . . scaffold780 GLEAN mRNA 95075 95303 0.414702 + . ID=CGI_10024713; scaffold780 TRF Tandem_Repeat 95075 95303 189 + . . scaffold780 GLEAN mRNA 95138 95237 0.414702 + . ID=CGI_10024713; scaffold780 TRF Tandem_Repeat 95138 95237 128 + . . scaffold780 GLEAN mRNA 95075 95303 0.999323 - . ID=CGI_10024714; scaffold780 TRF Tandem_Repeat 95075 95303 189 + . . scaffold780 GLEAN mRNA 95138 95237 0.999323 - . ID=CGI_10024714; scaffold780 TRF Tandem_Repeat 95138 95237 128 + . . scaffold780 GLEAN mRNA 144623 144649 0.986281 + . ID=CGI_10024719; scaffold780 TRF Tandem_Repeat 144623 144649 54 + . . scaffold780 GLEAN mRNA 155918 156110 0.986281 + . ID=CGI_10024719; scaffold780 TRF Tandem_Repeat 155918 156110 126 + . . scaffold780 GLEAN mRNA 155913 156110 0.986281 + . ID=CGI_10024719; scaffold780 TRF Tandem_Repeat 155913 156110 171 + . . scaffold780 GLEAN mRNA 150167 150931 0.986281 + . ID=CGI_10024719; scaffold780 WUBlastX LINE_L2 150167 150931 111 - . . scaffold780 GLEAN mRNA 150164 150481 0.986281 + . ID=CGI_10024719; scaffold780 WUBlastX LINE_L2 150164 150481 151 - . . scaffold780 GLEAN mRNA 149823 150161 0.986281 + . ID=CGI_10024719; scaffold780 WUBlastX LINE_L2 149823 150161 93 - . . scaffold780 GLEAN mRNA 149927 150487 0.986281 + . ID=CGI_10024719; scaffold780 WUBlastX LINE_L2 149927 150487 101 - . . scaffold780 GLEAN mRNA 163937 163963 0.986281 + . ID=CGI_10024719; scaffold780 TRF Tandem_Repeat 163937 163963 54 + . . scaffold780 GLEAN mRNA 166646 166681 0.544739 - . ID=CGI_10024720; scaffold780 TRF Tandem_Repeat 166646 166681 72 + . . scaffold780 GLEAN mRNA 168043 168099 0.544739 - . ID=CGI_10024720; scaffold780 TRF Tandem_Repeat 168043 168099 55 + . . scaffold780 GLEAN mRNA 197511 197693 0.99342 - . ID=CGI_10024722; scaffold780 TRF Tandem_Repeat 197511 197693 262 + . . scaffold780 GLEAN mRNA 208352 208398 0.523885 + . ID=CGI_10024723; scaffold780 TRF Tandem_Repeat 208352 208398 94 + . . scaffold780 GLEAN mRNA 223557 223838 0.523885 + . ID=CGI_10024723; scaffold780 TRF Tandem_Repeat 223557 223838 444 + . . scaffold780 GLEAN mRNA 216345 217037 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_L2 216345 217037 250 + . . scaffold780 GLEAN mRNA 216240 216683 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_L2 216240 216683 34 + . . scaffold780 GLEAN mRNA 232818 232844 0.523885 + . ID=CGI_10024723; scaffold780 TRF Tandem_Repeat 232818 232844 54 + . . scaffold780 GLEAN mRNA 234719 234770 0.523885 + . ID=CGI_10024723; scaffold780 TRF Tandem_Repeat 234719 234770 104 + . . scaffold780 GLEAN mRNA 229556 229837 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 229556 229837 41 + . . scaffold780 GLEAN mRNA 232324 232605 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 232324 232605 41 + . . scaffold780 GLEAN mRNA 229655 229840 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 229655 229840 74 + . . scaffold780 GLEAN mRNA 232423 232608 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 232423 232608 74 + . . scaffold780 GLEAN mRNA 229607 229846 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 229607 229846 50 + . . scaffold780 GLEAN mRNA 232375 232614 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 232375 232614 50 + . . scaffold780 GLEAN mRNA 229487 229879 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 229487 229879 33 + . . scaffold780 GLEAN mRNA 232255 232647 0.523885 + . ID=CGI_10024723; scaffold780 WUBlastX LINE_RTE-X 232255 232647 33 + . . scaffold780 GLEAN mRNA 259141 260463 0.724765 - . ID=CGI_10024726; scaffold780 TRF Tandem_Repeat 259141 260463 1525 + . . scaffold780 GLEAN mRNA 288559 288894 0.660246 + . ID=CGI_10024727; scaffold780 TRF Tandem_Repeat 288559 288894 292 + . . scaffold780 GLEAN mRNA 308815 308879 0.785646 + . ID=CGI_10024728; scaffold780 TRF Tandem_Repeat 308815 308879 130 + . . scaffold780 GLEAN mRNA 310660 310711 0.785646 + . ID=CGI_10024728; scaffold780 TRF Tandem_Repeat 310660 310711 86 + . . scaffold780 GLEAN mRNA 328818 328871 0.999675 + . ID=CGI_10024729; scaffold780 TRF Tandem_Repeat 328818 328871 108 + . . scaffold780 GLEAN mRNA 328871 328906 0.999675 + . ID=CGI_10024729; scaffold780 TRF Tandem_Repeat 328871 328906 72 + . . scaffold780 GLEAN mRNA 343175 343205 0.701893 - . ID=CGI_10024730; scaffold780 TRF Tandem_Repeat 343175 343205 62 + . . scaffold780 GLEAN mRNA 368537 368989 0.651026 - . ID=CGI_10024731; scaffold780 WUBlastX LINE_RTE-BovB 368537 368989 352 + . . scaffold780 GLEAN mRNA 402262 402432 0.999351 - . ID=CGI_10024733; scaffold780 TRF Tandem_Repeat 402262 402432 274 + . . scaffold780 GLEAN mRNA 409485 409580 0.999351 - . ID=CGI_10024733; scaffold780 TRF Tandem_Repeat 409485 409580 104 + . . scaffold780 GLEAN mRNA 409485 409613 0.999351 - . ID=CGI_10024733; scaffold780 TRF Tandem_Repeat 409485 409613 107 + . . scaffold780 GLEAN mRNA 409485 409580 0.650859 + . ID=CGI_10024734; scaffold780 TRF Tandem_Repeat 409485 409580 104 + . . scaffold780 GLEAN mRNA 409485 409613 0.650859 + . ID=CGI_10024734; scaffold780 TRF Tandem_Repeat 409485 409613 107 + . . scaffold780 GLEAN mRNA 425704 425764 0.999675 + . ID=CGI_10024735; scaffold780 TRF Tandem_Repeat 425704 425764 74 + . . scaffold780 GLEAN mRNA 425704 425765 0.999675 + . ID=CGI_10024735; scaffold780 TRF Tandem_Repeat 425704 425765 110 + . . scaffold780 GLEAN mRNA 432439 433640 0.999675 + . ID=CGI_10024735; scaffold780 TRF Tandem_Repeat 432439 433640 1800 + . . scaffold780 GLEAN mRNA 440690 440732 0.921743 + . ID=CGI_10024736; scaffold780 TRF Tandem_Repeat 440690 440732 86 + . . scaffold780 GLEAN mRNA 441527 441586 0.921743 + . ID=CGI_10024736; scaffold780 TRF Tandem_Repeat 441527 441586 120 + . . scaffold780 GLEAN mRNA 440465 440617 0.921743 + . ID=CGI_10024736; scaffold780 WUBlastX DNA_hAT-Hobo 440465 440617 71 - . . scaffold780 GLEAN mRNA 460027 460089 0.999651 - . ID=CGI_10024737; scaffold780 TRF Tandem_Repeat 460027 460089 67 + . . scaffold780 GLEAN mRNA 460027 460089 0.999651 - . ID=CGI_10024737; scaffold780 TRF Tandem_Repeat 460027 460089 58 + . . scaffold780 GLEAN mRNA 460578 460607 0.999651 - . ID=CGI_10024737; scaffold780 TRF Tandem_Repeat 460578 460607 60 + . . scaffold780 GLEAN mRNA 464414 464460 0.999651 - . ID=CGI_10024737; scaffold780 TRF Tandem_Repeat 464414 464460 85 + . . scaffold780 GLEAN mRNA 465103 465387 0.999651 - . ID=CGI_10024737; scaffold780 WUBlastX DNA_Maverick 465103 465387 32 - . . scaffold780 GLEAN mRNA 472872 472898 0.544809 + . ID=CGI_10024738; scaffold780 TRF Tandem_Repeat 472872 472898 54 + . . scaffold780 GLEAN mRNA 662201 662259 1 + . ID=CGI_10024741; scaffold780 TRF Tandem_Repeat 662201 662259 63 + . . scaffold780 GLEAN mRNA 662662 662702 1 + . ID=CGI_10024741; scaffold780 TRF Tandem_Repeat 662662 662702 57 + . . scaffold780 GLEAN mRNA 694121 694250 1 - . ID=CGI_10024742; scaffold780 TRF Tandem_Repeat 694121 694250 93 + . . scaffold780 GLEAN mRNA 694166 694312 1 - . ID=CGI_10024742; scaffold780 TRF Tandem_Repeat 694166 694312 73 + . . scaffold780 GLEAN mRNA 695913 695956 1 - . ID=CGI_10024742; scaffold780 TRF Tandem_Repeat 695913 695956 72 + . . scaffold780 GLEAN mRNA 708502 708739 0.575444 - . ID=CGI_10024744; scaffold780 TRF Tandem_Repeat 708502 708739 442 + . . scaffold780 GLEAN mRNA 708618 708722 0.575444 - . ID=CGI_10024744; scaffold780 TRF Tandem_Repeat 708618 708722 52 + . . scaffold780 GLEAN mRNA 737135 737179 0.999767 + . ID=CGI_10024745; scaffold780 TRF Tandem_Repeat 737135 737179 90 + . . scaffold780 GLEAN mRNA 740928 740978 0.999767 + . ID=CGI_10024745; scaffold780 TRF Tandem_Repeat 740928 740978 102 + . . scaffold780 GLEAN mRNA 742655 742755 0.999767 + . ID=CGI_10024745; scaffold780 TRF Tandem_Repeat 742655 742755 166 + . . scaffold780 GLEAN mRNA 742803 742838 0.999767 + . ID=CGI_10024745; scaffold780 TRF Tandem_Repeat 742803 742838 72 + . . scaffold780 GLEAN mRNA 811300 811351 0.9999 - . ID=CGI_10024747; scaffold780 TRF Tandem_Repeat 811300 811351 104 + . . scaffold780 GLEAN mRNA 811728 811764 0.9999 - . ID=CGI_10024747; scaffold780 TRF Tandem_Repeat 811728 811764 74 + . . scaffold780 GLEAN mRNA 811819 811863 0.9999 - . ID=CGI_10024747; scaffold780 TRF Tandem_Repeat 811819 811863 83 + . . scaffold780 GLEAN mRNA 965804 966241 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 965804 966241 163 + . . scaffold780 GLEAN mRNA 965759 966301 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 965759 966301 125 + . . scaffold780 GLEAN mRNA 965152 965664 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 965152 965664 45 + . . scaffold780 GLEAN mRNA 965113 965403 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 965113 965403 100 + . . scaffold780 GLEAN mRNA 968068 968217 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 968068 968217 95 - . . scaffold780 GLEAN mRNA 966972 967148 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 966972 967148 47 - . . scaffold780 GLEAN mRNA 966954 967268 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 966954 967268 27 - . . scaffold780 GLEAN mRNA 967427 967678 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 967427 967678 83 - . . scaffold780 GLEAN mRNA 967270 967527 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 967270 967527 105 - . . scaffold780 GLEAN mRNA 967704 968060 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 967704 968060 172 - . . scaffold780 GLEAN mRNA 968065 968241 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 968065 968241 60 - . . scaffold780 GLEAN mRNA 966864 966968 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 966864 966968 20 + . . scaffold780 GLEAN mRNA 966317 966928 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 966317 966928 125 - . . scaffold70 GLEAN mRNA 39658 39924 0.99982 + . ID=CGI_10024751; scaffold70 TRF Tandem_Repeat 39658 39924 276 + . . scaffold70 GLEAN mRNA 40982 41422 0.99982 + . ID=CGI_10024751; scaffold70 TRF Tandem_Repeat 40982 41422 428 + . . scaffold70 GLEAN mRNA 43555 43918 0.99982 + . ID=CGI_10024751; scaffold70 TRF Tandem_Repeat 43555 43918 524 + . . scaffold70 GLEAN mRNA 44740 44780 0.99982 + . ID=CGI_10024751; scaffold70 TRF Tandem_Repeat 44740 44780 82 + . . scaffold70 GLEAN mRNA 46581 46891 0.99982 + . ID=CGI_10024751; scaffold70 TRF Tandem_Repeat 46581 46891 370 + . . scaffold70 GLEAN mRNA 50287 50604 0.99982 + . ID=CGI_10024751; scaffold70 TRF Tandem_Repeat 50287 50604 406 + . . scaffold70 GLEAN mRNA 52776 52833 0.99982 + . ID=CGI_10024751; scaffold70 TRF Tandem_Repeat 52776 52833 100 + . . scaffold70 GLEAN mRNA 68807 68854 1 - . ID=CGI_10024753; scaffold70 TRF Tandem_Repeat 68807 68854 75 + . . scaffold70 GLEAN mRNA 70005 70310 1 - . ID=CGI_10024753; scaffold70 TRF Tandem_Repeat 70005 70310 452 + . . scaffold70 GLEAN mRNA 70383 71771 1 - . ID=CGI_10024753; scaffold70 TRF Tandem_Repeat 70383 71771 633 + . . scaffold70 GLEAN mRNA 70383 70834 1 - . ID=CGI_10024753; scaffold70 TRF Tandem_Repeat 70383 70834 534 + . . scaffold70 GLEAN mRNA 70938 71769 1 - . ID=CGI_10024753; scaffold70 TRF Tandem_Repeat 70938 71769 778 + . . scaffold70 GLEAN mRNA 70935 71769 1 - . ID=CGI_10024753; scaffold70 TRF Tandem_Repeat 70935 71769 953 + . . scaffold70 GLEAN mRNA 122718 123173 0.99511 - . ID=CGI_10024754; scaffold70 TRF Tandem_Repeat 122718 123173 756 + . . scaffold70 GLEAN mRNA 126680 126831 0.99511 - . ID=CGI_10024754; scaffold70 TRF Tandem_Repeat 126680 126831 151 + . . scaffold70 GLEAN mRNA 126687 126808 0.99511 - . ID=CGI_10024754; scaffold70 TRF Tandem_Repeat 126687 126808 127 + . . scaffold70 GLEAN mRNA 120005 120889 0.99511 - . ID=CGI_10024754; scaffold70 WUBlastX DNA_TcMar-m44 120005 120889 559 + . . scaffold70 GLEAN mRNA 151951 151978 1 - . ID=CGI_10024758; scaffold70 TRF Tandem_Repeat 151951 151978 56 + . . scaffold70 GLEAN mRNA 166760 166791 1 + . ID=CGI_10024759; scaffold70 TRF Tandem_Repeat 166760 166791 55 + . . scaffold70 GLEAN mRNA 208959 209115 0.995 - . ID=CGI_10024760; scaffold70 TRF Tandem_Repeat 208959 209115 212 + . . scaffold70 GLEAN mRNA 269038 269082 0.371481 + . ID=CGI_10024762; scaffold70 TRF Tandem_Repeat 269038 269082 74 + . . scaffold70 GLEAN mRNA 271864 272186 0.371481 + . ID=CGI_10024762; scaffold70 TRF Tandem_Repeat 271864 272186 329 + . . scaffold70 GLEAN mRNA 368239 368357 0.860497 + . ID=CGI_10024765; scaffold70 TRF Tandem_Repeat 368239 368357 91 + . . scaffold70 GLEAN mRNA 368933 369026 0.860497 + . ID=CGI_10024765; scaffold70 TRF Tandem_Repeat 368933 369026 116 + . . scaffold70 GLEAN mRNA 369075 369173 0.860497 + . ID=CGI_10024765; scaffold70 TRF Tandem_Repeat 369075 369173 182 + . . scaffold70 GLEAN mRNA 371923 371967 0.860497 + . ID=CGI_10024765; scaffold70 TRF Tandem_Repeat 371923 371967 60 + . . scaffold70 GLEAN mRNA 376958 377607 1 - . ID=CGI_10024766; scaffold70 TRF Tandem_Repeat 376958 377607 821 + . . scaffold70 GLEAN mRNA 382884 382908 0.937843 + . ID=CGI_10024767; scaffold70 TRF Tandem_Repeat 382884 382908 50 + . . scaffold70 GLEAN mRNA 383117 383180 0.937843 + . ID=CGI_10024767; scaffold70 TRF Tandem_Repeat 383117 383180 128 + . . scaffold70 GLEAN mRNA 402474 402503 0.997573 + . ID=CGI_10024768; scaffold70 TRF Tandem_Repeat 402474 402503 51 + . . scaffold70 GLEAN mRNA 447747 447798 0.983104 - . ID=CGI_10024769; scaffold70 TRF Tandem_Repeat 447747 447798 104 + . . scaffold70 GLEAN mRNA 452799 453017 0.996819 - . ID=CGI_10024770; scaffold70 WUBlastX LTR_Gypsy 452799 453017 46 - . . scaffold70 GLEAN mRNA 452751 452999 0.996819 - . ID=CGI_10024770; scaffold70 WUBlastX LTR_Gypsy 452751 452999 44 - . . scaffold70 GLEAN mRNA 482968 483020 0.999998 - . ID=CGI_10024772; scaffold70 TRF Tandem_Repeat 482968 483020 88 + . . scaffold70 GLEAN mRNA 487894 487918 0.999998 - . ID=CGI_10024772; scaffold70 TRF Tandem_Repeat 487894 487918 50 + . . scaffold70 GLEAN mRNA 493098 493262 0.999998 - . ID=CGI_10024772; scaffold70 TRF Tandem_Repeat 493098 493262 276 + . . scaffold70 GLEAN mRNA 503839 503880 0.998611 - . ID=CGI_10024774; scaffold70 TRF Tandem_Repeat 503839 503880 84 + . . scaffold70 GLEAN mRNA 515514 515606 0.998611 - . ID=CGI_10024774; scaffold70 WUBlastX LINE_RTE-X 515514 515606 34 - . . scaffold70 GLEAN mRNA 517610 517780 0.998611 - . ID=CGI_10024774; scaffold70 WUBlastX LINE_RTE-X 517610 517780 83 - . . scaffold70 GLEAN mRNA 515356 515493 0.998611 - . ID=CGI_10024774; scaffold70 WUBlastX LINE_RTE-X 515356 515493 29 - . . scaffold70 GLEAN mRNA 515656 515790 0.998611 - . ID=CGI_10024774; scaffold70 WUBlastX LINE_RTE-X 515656 515790 48 - . . scaffold70 GLEAN mRNA 515353 515790 0.998611 - . ID=CGI_10024774; scaffold70 WUBlastX LINE_RTE-X 515353 515790 22 - . . scaffold70 GLEAN mRNA 517972 518127 0.998611 - . ID=CGI_10024774; scaffold70 WUBlastX LINE_CR1-L2 517972 518127 43 + . . scaffold70 GLEAN mRNA 525492 525532 0.998611 - . ID=CGI_10024774; scaffold70 TRF Tandem_Repeat 525492 525532 82 + . . scaffold70 GLEAN mRNA 527825 527906 0.998611 - . ID=CGI_10024774; scaffold70 TRF Tandem_Repeat 527825 527906 92 + . . scaffold70 GLEAN mRNA 527843 527956 0.998611 - . ID=CGI_10024774; scaffold70 TRF Tandem_Repeat 527843 527956 84 + . . scaffold70 GLEAN mRNA 515514 515606 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 515514 515606 34 - . . scaffold70 GLEAN mRNA 517610 517780 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 517610 517780 83 - . . scaffold70 GLEAN mRNA 515356 515493 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 515356 515493 29 - . . scaffold70 GLEAN mRNA 515656 515790 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 515656 515790 48 - . . scaffold70 GLEAN mRNA 515353 515790 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 515353 515790 22 - . . scaffold70 GLEAN mRNA 517972 518127 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_CR1-L2 517972 518127 43 + . . scaffold70 GLEAN mRNA 534157 534197 0.707773 + . ID=CGI_10024776; scaffold70 TRF Tandem_Repeat 534157 534197 73 + . . scaffold70 GLEAN mRNA 543945 543986 0.992507 + . ID=CGI_10024777; scaffold70 TRF Tandem_Repeat 543945 543986 57 + . . scaffold70 GLEAN mRNA 544033 544068 0.992507 + . ID=CGI_10024777; scaffold70 TRF Tandem_Repeat 544033 544068 72 + . . scaffold70 GLEAN mRNA 549036 549284 0.992507 + . ID=CGI_10024777; scaffold70 TRF Tandem_Repeat 549036 549284 295 + . . scaffold70 GLEAN mRNA 549629 550526 0.992507 + . ID=CGI_10024777; scaffold70 TRF Tandem_Repeat 549629 550526 1521 + . . scaffold70 GLEAN mRNA 616988 617037 0.814164 - . ID=CGI_10024778; scaffold70 TRF Tandem_Repeat 616988 617037 84 + . . scaffold70 GLEAN mRNA 617477 617625 0.814164 - . ID=CGI_10024778; scaffold70 TRF Tandem_Repeat 617477 617625 280 + . . scaffold70 GLEAN mRNA 612710 613189 0.814164 - . ID=CGI_10024778; scaffold70 WUBlastX LINE_L2 612710 613189 51 + . . scaffold70 GLEAN mRNA 612794 613168 0.814164 - . ID=CGI_10024778; scaffold70 WUBlastX LINE_RTE-X 612794 613168 80 + . . scaffold70 GLEAN mRNA 612953 613387 0.814164 - . ID=CGI_10024778; scaffold70 WUBlastX LINE_RTE-X 612953 613387 40 + . . scaffold70 GLEAN mRNA 611888 612049 0.814164 - . ID=CGI_10024778; scaffold70 WUBlastX LINE_L2 611888 612049 28 + . . scaffold70 GLEAN mRNA 611424 611684 0.814164 - . ID=CGI_10024778; scaffold70 WUBlastX LINE_RTE-X 611424 611684 41 + . . scaffold70 GLEAN mRNA 612899 613273 0.814164 - . ID=CGI_10024778; scaffold70 WUBlastX LINE_L2 612899 613273 42 + . . scaffold70 GLEAN mRNA 611466 611684 0.814164 - . ID=CGI_10024778; scaffold70 WUBlastX LINE_RTE-X 611466 611684 66 + . . scaffold70 GLEAN mRNA 612920 613168 0.814164 - . ID=CGI_10024778; scaffold70 WUBlastX LINE_L1-Tx1 612920 613168 90 + . . scaffold70 GLEAN mRNA 612685 612807 0.814164 - . ID=CGI_10024778; scaffold70 WUBlastX LINE_L2 612685 612807 25 + . . scaffold70 GLEAN mRNA 610017 610199 0.814164 - . ID=CGI_10024778; scaffold70 WUBlastX LINE_RTE-X 610017 610199 24 + . . scaffold70 GLEAN mRNA 646430 646740 0.908162 + . ID=CGI_10024781; scaffold70 TRF Tandem_Repeat 646430 646740 321 + . . scaffold70 GLEAN mRNA 648394 648459 0.908162 + . ID=CGI_10024781; scaffold70 TRF Tandem_Repeat 648394 649229 1395 + . . scaffold70 GLEAN mRNA 648394 648459 0.908162 + . ID=CGI_10024781; scaffold70 TRF Tandem_Repeat 648394 649229 1377 + . . scaffold70 GLEAN mRNA 663545 664230 1 + . ID=CGI_10024783; scaffold70 TRF Tandem_Repeat 663545 664230 939 + . . scaffold70 GLEAN mRNA 679558 679988 0.804421 + . ID=CGI_10024786; scaffold70 TRF Tandem_Repeat 679558 679988 413 + . . scaffold70 GLEAN mRNA 682396 683049 0.804421 + . ID=CGI_10024786; scaffold70 TRF Tandem_Repeat 682396 683049 635 + . . scaffold70 GLEAN mRNA 697162 697559 0.811083 - . ID=CGI_10024788; scaffold70 TRF Tandem_Repeat 697162 697559 615 + . . scaffold70 GLEAN mRNA 698751 698800 0.811083 - . ID=CGI_10024788; scaffold70 TRF Tandem_Repeat 698751 698800 100 + . . scaffold70 GLEAN mRNA 701726 701935 0.811083 - . ID=CGI_10024788; scaffold70 WUBlastX DNA_TcMar-Tc1 701726 701935 143 - . . scaffold70 GLEAN mRNA 701932 702462 0.811083 - . ID=CGI_10024788; scaffold70 WUBlastX DNA_TcMar-Tc1 701932 702462 223 - . . scaffold70 GLEAN mRNA 701932 702669 0.811083 - . ID=CGI_10024788; scaffold70 WUBlastX DNA_TcMar-Tc1 701932 702669 92 - . . scaffold70 GLEAN mRNA 691818 691952 0.811083 - . ID=CGI_10024788; scaffold70 WUBlastX LINE_RTE-BovB 691818 691952 32 + . . scaffold70 GLEAN mRNA 772498 772529 0.934901 - . ID=CGI_10024790; scaffold70 TRF Tandem_Repeat 772498 772529 55 + . . scaffold70 GLEAN mRNA 781092 781130 0.934901 - . ID=CGI_10024790; scaffold70 TRF Tandem_Repeat 781092 781130 78 + . . scaffold70 GLEAN mRNA 783179 783367 0.934901 - . ID=CGI_10024790; scaffold70 TRF Tandem_Repeat 783179 783367 65 + . . scaffold70 GLEAN mRNA 769461 770904 0.934901 - . ID=CGI_10024790; scaffold70 TRF Tandem_Repeat 769461 770904 2215 + . . scaffold70 GLEAN mRNA 815110 816151 1 + . ID=CGI_10024793; scaffold70 TRF Tandem_Repeat 815110 816151 1252 + . . scaffold70 GLEAN mRNA 815110 816151 1 + . ID=CGI_10024793; scaffold70 TRF Tandem_Repeat 815110 816151 1501 + . . scaffold70 GLEAN mRNA 815110 816151 1 + . ID=CGI_10024793; scaffold70 TRF Tandem_Repeat 815110 816151 1499 + . . scaffold70 GLEAN mRNA 823959 824014 1 - . ID=CGI_10024794; scaffold70 TRF Tandem_Repeat 823959 824014 76 + . . scaffold70 GLEAN mRNA 832059 832655 0.989219 + . ID=CGI_10024795; scaffold70 TRF Tandem_Repeat 832059 832655 482 + . . scaffold70 GLEAN mRNA 832099 832621 0.989219 + . ID=CGI_10024795; scaffold70 TRF Tandem_Repeat 832099 832621 393 + . . scaffold70 GLEAN mRNA 832099 832655 0.989219 + . ID=CGI_10024795; scaffold70 TRF Tandem_Repeat 832099 832655 463 + . . scaffold70 GLEAN mRNA 893509 894475 0.999996 + . ID=CGI_10024801; scaffold70 TRF Tandem_Repeat 893509 894475 804 + . . scaffold70 GLEAN mRNA 893509 894474 0.999996 + . ID=CGI_10024801; scaffold70 TRF Tandem_Repeat 893509 894474 997 + . . scaffold70 GLEAN mRNA 893504 894473 0.999996 + . ID=CGI_10024801; scaffold70 TRF Tandem_Repeat 893504 894473 1021 + . . scaffold70 GLEAN mRNA 894379 894490 0.999996 + . ID=CGI_10024801; scaffold70 TRF Tandem_Repeat 894379 894490 86 + . . scaffold70 GLEAN mRNA 900616 900830 0.999996 + . ID=CGI_10024801; scaffold70 TRF Tandem_Repeat 900616 900830 364 + . . scaffold70 GLEAN mRNA 903008 903778 0.999996 + . ID=CGI_10024801; scaffold70 TRF Tandem_Repeat 903008 903778 1368 + . . scaffold70 GLEAN mRNA 915778 915974 0.714729 + . ID=CGI_10024802; scaffold70 TRF Tandem_Repeat 915778 915974 286 + . . scaffold70 GLEAN mRNA 923131 923715 0.955608 + . ID=CGI_10024803; scaffold70 WUBlastX DNA_hAT 923131 923715 84 + . . scaffold70 GLEAN mRNA 944075 944123 0.982561 + . ID=CGI_10024805; scaffold70 TRF Tandem_Repeat 944075 944123 98 + . . scaffold70 GLEAN mRNA 950675 950713 0.982561 + . ID=CGI_10024805; scaffold70 TRF Tandem_Repeat 950675 950713 51 + . . scaffold492 GLEAN mRNA 113626 113832 0.695642 - . ID=CGI_10024810; scaffold492 WUBlastX LTR_Gypsy-Troyk 113626 115584 1085 - . . scaffold492 GLEAN mRNA 179302 179609 1 - . ID=CGI_10024811; scaffold492 TRF Tandem_Repeat 179302 179609 490 + . . scaffold492 GLEAN mRNA 179837 180724 1 - . ID=CGI_10024811; scaffold492 WUBlastX LINE_L1-Tx1 179837 180724 167 + . . scaffold492 GLEAN mRNA 200615 200658 0.791674 + . ID=CGI_10024813; scaffold492 TRF Tandem_Repeat 200615 200658 52 + . . scaffold492 GLEAN mRNA 207481 207544 0.791674 + . ID=CGI_10024813; scaffold492 TRF Tandem_Repeat 207481 207544 69 + . . scaffold492 GLEAN mRNA 201627 202487 0.791674 + . ID=CGI_10024813; scaffold492 WUBlastX DNA_TcMar-Tc1 201627 202487 261 - . . scaffold492 GLEAN mRNA 268288 269298 0.999027 + . ID=CGI_10024818; scaffold492 WUBlastX LINE_L2 268288 269298 264 - . . scaffold492 GLEAN mRNA 268705 269418 0.999027 + . ID=CGI_10024818; scaffold492 WUBlastX LINE_CR1 268705 269418 33 - . . scaffold492 GLEAN mRNA 397081 397153 0.995709 - . ID=CGI_10024832; scaffold492 TRF Tandem_Repeat 397081 397153 146 + . . scaffold492 GLEAN mRNA 397428 397463 0.995709 - . ID=CGI_10024832; scaffold492 TRF Tandem_Repeat 397428 397463 72 + . . scaffold492 GLEAN mRNA 416254 416309 0.820696 - . ID=CGI_10024834; scaffold492 TRF Tandem_Repeat 416254 416309 112 + . . scaffold492 GLEAN mRNA 415783 415995 0.820696 - . ID=CGI_10024834; scaffold492 WUBlastX LINE_L2 415783 415995 56 + . . scaffold492 GLEAN mRNA 432655 432942 1 - . ID=CGI_10024835; scaffold492 WUBlastX LINE_RTE-X 432655 432942 68 + . . scaffold492 GLEAN mRNA 432760 433065 1 - . ID=CGI_10024835; scaffold492 WUBlastX LINE_RTE-X 432760 433065 67 + . . scaffold492 GLEAN mRNA 432745 432942 1 - . ID=CGI_10024835; scaffold492 WUBlastX LINE_RTE-X 432745 432942 77 + . . scaffold492 GLEAN mRNA 442153 442215 0.878616 + . ID=CGI_10024836; scaffold492 WUBlastX LINE_RTE-X 442153 442215 25 + . . scaffold492 GLEAN mRNA 442211 442327 0.878616 + . ID=CGI_10024836; scaffold492 WUBlastX LINE_RTE-X 442211 442327 27 + . . scaffold492 GLEAN mRNA 470921 470981 0.999676 - . ID=CGI_10024838; scaffold492 TRF Tandem_Repeat 470921 470981 95 + . . scaffold492 GLEAN mRNA 471260 471286 0.999676 - . ID=CGI_10024838; scaffold492 TRF Tandem_Repeat 471260 471286 54 + . . scaffold492 GLEAN mRNA 525295 525380 0.998336 + . ID=CGI_10024842; scaffold492 TRF Tandem_Repeat 525295 525380 59 + . . scaffold492 GLEAN mRNA 539321 539386 0.999949 + . ID=CGI_10024844; scaffold492 TRF Tandem_Repeat 539321 539386 132 + . . scaffold492 GLEAN mRNA 612039 612084 0.667613 - . ID=CGI_10024848; scaffold492 TRF Tandem_Repeat 612039 612084 92 + . . scaffold492 GLEAN mRNA 612461 612510 0.667613 - . ID=CGI_10024848; scaffold492 TRF Tandem_Repeat 612461 612510 100 + . . scaffold492 GLEAN mRNA 614438 614530 0.489668 - . ID=CGI_10024849; scaffold492 WUBlastX LINE_RTE-X 614438 615319 99 - . . scaffold492 GLEAN mRNA 655955 658098 1 - . ID=CGI_10024852; scaffold492 TRF Tandem_Repeat 655955 658098 3185 + . . scaffold492 GLEAN mRNA 655954 658098 1 - . ID=CGI_10024852; scaffold492 TRF Tandem_Repeat 655954 658098 3166 + . . scaffold492 GLEAN mRNA 683665 684061 0.994319 + . ID=CGI_10024854; scaffold492 TRF Tandem_Repeat 683665 684061 749 + . . scaffold492 GLEAN mRNA 783303 783332 0.999992 + . ID=CGI_10024863; scaffold492 TRF Tandem_Repeat 783303 783332 60 + . . scaffold492 GLEAN mRNA 798434 799219 1 - . ID=CGI_10024865; scaffold492 WUBlastX DNA_IS4EU 798434 799444 742 - . . scaffold492 GLEAN mRNA 811710 811757 1 + . ID=CGI_10024866; scaffold492 TRF Tandem_Repeat 811710 811757 96 + . . scaffold492 GLEAN mRNA 819509 819552 0.946709 + . ID=CGI_10024867; scaffold492 TRF Tandem_Repeat 819509 819552 88 + . . scaffold492 GLEAN mRNA 842374 842408 0.999676 + . ID=CGI_10024869; scaffold492 TRF Tandem_Repeat 842374 842408 70 + . . scaffold492 GLEAN mRNA 861476 861650 0.999349 + . ID=CGI_10024870; scaffold492 TRF Tandem_Repeat 861476 861650 136 + . . scaffold492 GLEAN mRNA 865620 865747 0.999349 + . ID=CGI_10024870; scaffold492 TRF Tandem_Repeat 865620 865747 238 + . . scaffold492 GLEAN mRNA 868931 869014 0.999349 + . ID=CGI_10024870; scaffold492 TRF Tandem_Repeat 868931 869014 59 + . . scaffold492 GLEAN mRNA 874649 874948 0.999349 + . ID=CGI_10024870; scaffold492 WUBlastX LINE_RTE-X 874649 874948 48 + . . scaffold492 GLEAN mRNA 884502 884735 0.999998 + . ID=CGI_10024872; scaffold492 WUBlastX LINE_L2 884502 884735 44 - . . scaffold492 GLEAN mRNA 884622 884828 0.999998 + . ID=CGI_10024872; scaffold492 WUBlastX LINE_L2 884622 884828 51 - . . scaffold492 GLEAN mRNA 894926 895020 0.999992 + . ID=CGI_10024873; scaffold492 TRF Tandem_Repeat 894926 895020 190 + . . scaffold492 GLEAN mRNA 895655 895790 0.999992 + . ID=CGI_10024873; scaffold492 TRF Tandem_Repeat 895655 895790 191 + . . scaffold492 GLEAN mRNA 895837 895946 0.999992 + . ID=CGI_10024873; scaffold492 TRF Tandem_Repeat 895837 895967 203 + . . scaffold492 GLEAN mRNA 902009 902324 0.996603 + . ID=CGI_10024874; scaffold492 TRF Tandem_Repeat 902009 902324 400 + . . scaffold492 GLEAN mRNA 902009 902324 0.996603 + . ID=CGI_10024874; scaffold492 TRF Tandem_Repeat 902009 902324 377 + . . scaffold492 GLEAN mRNA 959672 959757 0.999822 + . ID=CGI_10024875; scaffold492 TRF Tandem_Repeat 959672 959757 102 + . . scaffold492 GLEAN mRNA 959680 959754 0.999822 + . ID=CGI_10024875; scaffold492 TRF Tandem_Repeat 959680 959754 114 + . . scaffold492 GLEAN mRNA 959672 959757 0.999822 + . ID=CGI_10024875; scaffold492 TRF Tandem_Repeat 959672 959757 129 + . . scaffold492 GLEAN mRNA 959927 961111 0.999822 + . ID=CGI_10024875; scaffold492 TRF Tandem_Repeat 959927 961111 1654 + . . scaffold492 GLEAN mRNA 973414 973491 0.562435 - . ID=CGI_10024876; scaffold492 TRF Tandem_Repeat 973414 973491 99 + . . scaffold492 GLEAN mRNA 974779 974829 0.562435 - . ID=CGI_10024876; scaffold492 TRF Tandem_Repeat 974779 974829 95 + . . scaffold146 GLEAN mRNA 15977 16372 0.999234 + . ID=CGI_10024878; scaffold146 WUBlastX LINE_CR1-L2 15977 16372 20 + . . scaffold146 GLEAN mRNA 17125 17162 0.999234 + . ID=CGI_10024878; scaffold146 TRF Tandem_Repeat 17125 17162 67 + . . scaffold146 GLEAN mRNA 19081 19130 0.999234 + . ID=CGI_10024878; scaffold146 TRF Tandem_Repeat 19081 19130 100 + . . scaffold146 GLEAN mRNA 19350 19683 0.999234 + . ID=CGI_10024878; scaffold146 TRF Tandem_Repeat 19350 19683 404 + . . scaffold146 GLEAN mRNA 19749 19807 0.999234 + . ID=CGI_10024878; scaffold146 TRF Tandem_Repeat 19749 19807 118 + . . scaffold146 GLEAN mRNA 16040 16423 0.999234 + . ID=CGI_10024878; scaffold146 WUBlastX LINE_L2 16040 16423 97 + . . scaffold146 GLEAN mRNA 41930 41957 0.499837 + . ID=CGI_10024882; scaffold146 TRF Tandem_Repeat 41930 41957 56 + . . scaffold146 GLEAN mRNA 47549 47596 0.499837 + . ID=CGI_10024882; scaffold146 TRF Tandem_Repeat 47549 47596 96 + . . scaffold146 GLEAN mRNA 85067 85979 1 + . ID=CGI_10024885; scaffold146 TRF Tandem_Repeat 85067 85979 1105 + . . scaffold146 GLEAN mRNA 150883 150924 0.958207 + . ID=CGI_10024887; scaffold146 TRF Tandem_Repeat 150883 150924 77 + . . scaffold146 GLEAN mRNA 150923 150956 0.958207 + . ID=CGI_10024887; scaffold146 TRF Tandem_Repeat 150923 150956 68 + . . scaffold146 GLEAN mRNA 178176 178634 0.739802 + . ID=CGI_10024889; scaffold146 TRF Tandem_Repeat 178176 178634 659 + . . scaffold146 GLEAN mRNA 178704 179490 0.739802 + . ID=CGI_10024889; scaffold146 TRF Tandem_Repeat 178704 179490 1028 + . . scaffold146 GLEAN mRNA 178704 179489 0.739802 + . ID=CGI_10024889; scaffold146 TRF Tandem_Repeat 178704 179489 1201 + . . scaffold146 GLEAN mRNA 210206 210248 0.744629 + . ID=CGI_10024892; scaffold146 TRF Tandem_Repeat 210206 210248 86 + . . scaffold146 GLEAN mRNA 219504 219866 0.744629 + . ID=CGI_10024892; scaffold146 TRF Tandem_Repeat 219504 219866 379 + . . scaffold146 GLEAN mRNA 240569 241435 0.744629 + . ID=CGI_10024892; scaffold146 TRF Tandem_Repeat 240569 241435 915 + . . scaffold146 GLEAN mRNA 348651 348761 0.539484 - . ID=CGI_10024897; scaffold146 TRF Tandem_Repeat 348651 348761 152 + . . scaffold146 GLEAN mRNA 350736 350894 0.539484 - . ID=CGI_10024897; scaffold146 TRF Tandem_Repeat 350736 350894 156 + . . scaffold146 GLEAN mRNA 355601 355645 0.539484 - . ID=CGI_10024897; scaffold146 TRF Tandem_Repeat 355601 355645 63 + . . scaffold146 GLEAN mRNA 433327 433354 0.544647 + . ID=CGI_10024905; scaffold146 TRF Tandem_Repeat 433327 433354 56 + . . scaffold146 GLEAN mRNA 434148 434188 0.544647 + . ID=CGI_10024905; scaffold146 TRF Tandem_Repeat 434148 434188 73 + . . scaffold146 GLEAN mRNA 438182 438219 0.544647 + . ID=CGI_10024905; scaffold146 TRF Tandem_Repeat 438182 438219 76 + . . scaffold146 GLEAN mRNA 453061 453348 0.544479 - . ID=CGI_10024906; scaffold146 WUBlastX LINE_RTE-X 453061 453348 118 - . . scaffold146 GLEAN mRNA 453034 453384 0.544479 - . ID=CGI_10024906; scaffold146 WUBlastX LINE_RTE-X 453034 453384 96 - . . scaffold146 GLEAN mRNA 475479 475737 0.999971 + . ID=CGI_10024909; scaffold146 TRF Tandem_Repeat 475479 475737 394 + . . scaffold146 GLEAN mRNA 475479 475781 0.999971 + . ID=CGI_10024909; scaffold146 TRF Tandem_Repeat 475479 475781 392 + . . scaffold146 GLEAN mRNA 588959 589111 0.999984 + . ID=CGI_10024914; scaffold146 WUBlastX LINE_L1 588335 589111 40 + . . scaffold146 GLEAN mRNA 619152 619190 0.912862 - . ID=CGI_10024915; scaffold146 TRF Tandem_Repeat 619152 619190 62 + . . scaffold146 GLEAN mRNA 624937 625695 0.912862 - . ID=CGI_10024915; scaffold146 WUBlastX LINE_L1-Tx1 624937 625695 152 - . . scaffold146 GLEAN mRNA 624787 625665 0.912862 - . ID=CGI_10024915; scaffold146 WUBlastX LINE_L1-Tx1 624787 625665 118 - . . scaffold146 GLEAN mRNA 646532 646571 0.499837 - . ID=CGI_10024916; scaffold146 TRF Tandem_Repeat 646532 646571 71 + . . scaffold146 GLEAN mRNA 641979 642203 0.499837 - . ID=CGI_10024916; scaffold146 WUBlastX LINE_L1-Tx1 641979 642203 45 - . . scaffold146 GLEAN mRNA 643735 643986 0.499837 - . ID=CGI_10024916; scaffold146 WUBlastX LINE_Penelope 643735 643986 46 - . . scaffold146 GLEAN mRNA 643747 644151 0.499837 - . ID=CGI_10024916; scaffold146 WUBlastX LINE_Penelope 643747 644151 23 - . . scaffold146 GLEAN mRNA 643774 644052 0.499837 - . ID=CGI_10024916; scaffold146 WUBlastX LINE_Penelope 643774 644052 60 - . . scaffold146 GLEAN mRNA 675155 675198 0.737513 - . ID=CGI_10024919; scaffold146 TRF Tandem_Repeat 675155 675198 88 + . . scaffold146 GLEAN mRNA 682438 682493 0.737513 - . ID=CGI_10024919; scaffold146 TRF Tandem_Repeat 682438 682493 103 + . . scaffold146 GLEAN mRNA 687974 688017 0.737513 - . ID=CGI_10024919; scaffold146 TRF Tandem_Repeat 687974 688017 88 + . . scaffold146 GLEAN mRNA 699737 699774 0.737513 - . ID=CGI_10024919; scaffold146 TRF Tandem_Repeat 699737 699774 76 + . . scaffold146 GLEAN mRNA 697913 698413 0.737513 - . ID=CGI_10024919; scaffold146 WUBlastX DNA_hAT-hATw 697913 698413 28 - . . scaffold146 GLEAN mRNA 709789 710034 0.737513 - . ID=CGI_10024919; scaffold146 TRF Tandem_Repeat 709789 710034 219 + . . scaffold146 GLEAN mRNA 724033 724083 0.737513 - . ID=CGI_10024919; scaffold146 TRF Tandem_Repeat 724033 724083 102 + . . scaffold146 GLEAN mRNA 735632 735730 0.737513 - . ID=CGI_10024919; scaffold146 TRF Tandem_Repeat 735632 735730 103 + . . scaffold146 GLEAN mRNA 738550 738593 0.737513 - . ID=CGI_10024919; scaffold146 TRF Tandem_Repeat 738550 738593 79 + . . scaffold146 GLEAN mRNA 744529 744579 0.737513 - . ID=CGI_10024919; scaffold146 TRF Tandem_Repeat 744529 744579 75 + . . scaffold146 GLEAN mRNA 793684 793918 0.997836 + . ID=CGI_10024921; scaffold146 TRF Tandem_Repeat 793684 793918 150 + . . scaffold146 GLEAN mRNA 799891 799969 0.997836 + . ID=CGI_10024921; scaffold146 TRF Tandem_Repeat 799891 799969 95 + . . scaffold146 GLEAN mRNA 843790 844147 0.977393 + . ID=CGI_10024922; scaffold146 TRF Tandem_Repeat 843790 844147 475 + . . scaffold146 GLEAN mRNA 842599 842772 0.977393 + . ID=CGI_10024922; scaffold146 WUBlastX LTR_Gypsy 842599 842772 27 + . . scaffold146 GLEAN mRNA 902986 903259 0.805057 - . ID=CGI_10024925; scaffold146 TRF Tandem_Repeat 902986 903259 362 + . . scaffold146 GLEAN mRNA 902962 903259 0.805057 - . ID=CGI_10024925; scaffold146 TRF Tandem_Repeat 902962 903259 377 + . . scaffold146 GLEAN mRNA 980205 980247 0.894216 - . ID=CGI_10024927; scaffold146 TRF Tandem_Repeat 980205 980247 63 + . . scaffold448 GLEAN mRNA 27391 27705 0.727338 + . ID=CGI_10024928; scaffold448 WUBlastX LTR_DIRS? 27391 27705 135 - . . scaffold448 GLEAN mRNA 29473 29712 0.727338 + . ID=CGI_10024928; scaffold448 WUBlastX LTR_DIRS 29473 29712 64 - . . scaffold448 GLEAN mRNA 28731 29282 0.727338 + . ID=CGI_10024928; scaffold448 WUBlastX LTR_DIRS 28731 29282 131 - . . scaffold448 GLEAN mRNA 29356 29727 0.727338 + . ID=CGI_10024928; scaffold448 WUBlastX LTR_DIRS 29356 29727 59 - . . scaffold448 GLEAN mRNA 29861 29962 0.727338 + . ID=CGI_10024928; scaffold448 WUBlastX LTR_DIRS 29861 29962 22 - . . scaffold448 GLEAN mRNA 27625 28212 0.727338 + . ID=CGI_10024928; scaffold448 WUBlastX LTR_DIRS 27625 28212 22 - . . scaffold448 GLEAN mRNA 62175 63006 0.998765 + . ID=CGI_10024929; scaffold448 TRF Tandem_Repeat 62175 63006 1175 + . . scaffold448 GLEAN mRNA 62081 63009 0.998765 + . ID=CGI_10024929; scaffold448 TRF Tandem_Repeat 62081 63009 1043 + . . scaffold448 GLEAN mRNA 64085 64142 0.998765 + . ID=CGI_10024929; scaffold448 TRF Tandem_Repeat 64085 64142 116 + . . scaffold448 GLEAN mRNA 70611 70654 0.998765 + . ID=CGI_10024929; scaffold448 TRF Tandem_Repeat 70611 70654 61 + . . scaffold448 GLEAN mRNA 66214 66546 0.998765 + . ID=CGI_10024929; scaffold448 WUBlastX LINE_L2 66214 66546 59 + . . scaffold448 GLEAN mRNA 66921 67007 0.998765 + . ID=CGI_10024929; scaffold448 WUBlastX LINE_CR1 66921 67007 20 + . . scaffold448 GLEAN mRNA 66612 66758 0.998765 + . ID=CGI_10024929; scaffold448 WUBlastX LINE_CR1-L2 66612 66758 45 + . . scaffold448 GLEAN mRNA 66749 66925 0.998765 + . ID=CGI_10024929; scaffold448 WUBlastX LINE_CR1-L2 66749 66925 21 + . . scaffold448 GLEAN mRNA 83978 84030 0.998765 + . ID=CGI_10024929; scaffold448 TRF Tandem_Repeat 83978 84030 65 + . . scaffold448 GLEAN mRNA 84582 84621 0.998765 + . ID=CGI_10024929; scaffold448 TRF Tandem_Repeat 84582 84621 71 + . . scaffold448 GLEAN mRNA 92449 92474 0.990745 - . ID=CGI_10024930; scaffold448 TRF Tandem_Repeat 92449 92474 52 + . . scaffold448 GLEAN mRNA 141943 141996 1 + . ID=CGI_10024933; scaffold448 TRF Tandem_Repeat 141943 141996 108 + . . scaffold448 GLEAN mRNA 157145 157193 0.957711 + . ID=CGI_10024934; scaffold448 TRF Tandem_Repeat 157145 157193 98 + . . scaffold448 GLEAN mRNA 157872 157979 0.957711 + . ID=CGI_10024934; scaffold448 WUBlastX DNA_Harbinger 157872 157979 43 - . . scaffold448 GLEAN mRNA 157984 158913 0.957711 + . ID=CGI_10024934; scaffold448 WUBlastX DNA_Harbinger 157984 158913 708 - . . scaffold448 GLEAN mRNA 213388 213768 0.999613 + . ID=CGI_10024936; scaffold448 WUBlastX DNA_Kolobok-Hyd 213247 213768 25 + . . scaffold448 GLEAN mRNA 213388 213768 0.999613 + . ID=CGI_10024936; scaffold448 WUBlastX DNA_Kolobok-Hyd 213343 213768 43 + . . scaffold448 GLEAN mRNA 309246 309731 0.48146 + . ID=CGI_10024939; scaffold448 WUBlastX DNA_Sola 308997 309731 205 + . . scaffold448 GLEAN mRNA 402127 402183 0.998615 - . ID=CGI_10024943; scaffold448 TRF Tandem_Repeat 402127 402183 114 + . . scaffold448 GLEAN mRNA 404208 404261 0.998615 - . ID=CGI_10024943; scaffold448 TRF Tandem_Repeat 404208 404261 108 + . . scaffold448 GLEAN mRNA 409461 409494 0.998615 - . ID=CGI_10024943; scaffold448 TRF Tandem_Repeat 409461 409494 68 + . . scaffold448 GLEAN mRNA 420091 420125 0.548785 + . ID=CGI_10024944; scaffold448 TRF Tandem_Repeat 420091 420125 70 + . . scaffold448 GLEAN mRNA 422986 423122 0.548785 + . ID=CGI_10024944; scaffold448 TRF Tandem_Repeat 422986 423122 177 + . . scaffold448 GLEAN mRNA 427230 427265 0.548785 + . ID=CGI_10024944; scaffold448 TRF Tandem_Repeat 427230 427265 72 + . . scaffold448 GLEAN mRNA 439509 439561 0.993907 + . ID=CGI_10024948; scaffold448 TRF Tandem_Repeat 439509 439561 65 + . . scaffold448 GLEAN mRNA 439748 440005 0.993907 + . ID=CGI_10024948; scaffold448 TRF Tandem_Repeat 439748 440005 141 + . . scaffold448 GLEAN mRNA 439681 440194 0.993907 + . ID=CGI_10024948; scaffold448 TRF Tandem_Repeat 439681 440194 913 + . . scaffold448 GLEAN mRNA 498130 498193 0.650991 - . ID=CGI_10024950; scaffold448 TRF Tandem_Repeat 498130 498193 103 + . . scaffold448 GLEAN mRNA 518300 518438 0.333805 + . ID=CGI_10024951; scaffold448 TRF Tandem_Repeat 518300 518438 214 + . . scaffold448 GLEAN mRNA 654807 654843 0.999848 + . ID=CGI_10024954; scaffold448 TRF Tandem_Repeat 654807 654843 74 + . . scaffold448 GLEAN mRNA 663561 663617 0.999415 + . ID=CGI_10024956; scaffold448 TRF Tandem_Repeat 663561 663617 114 + . . scaffold448 GLEAN mRNA 733741 733877 0.999906 + . ID=CGI_10024961; scaffold448 TRF Tandem_Repeat 733741 733877 184 + . . scaffold448 GLEAN mRNA 738051 738095 0.999906 + . ID=CGI_10024961; scaffold448 TRF Tandem_Repeat 738051 738095 65 + . . scaffold448 GLEAN mRNA 746520 746561 0.999906 + . ID=CGI_10024961; scaffold448 TRF Tandem_Repeat 746520 746561 68 + . . scaffold448 GLEAN mRNA 746521 746558 0.999906 + . ID=CGI_10024961; scaffold448 TRF Tandem_Repeat 746521 746558 51 + . . scaffold448 GLEAN mRNA 753598 753628 0.999624 + . ID=CGI_10024962; scaffold448 TRF Tandem_Repeat 753598 753628 62 + . . scaffold448 GLEAN mRNA 761673 761719 0.999624 + . ID=CGI_10024962; scaffold448 TRF Tandem_Repeat 761673 761719 57 + . . scaffold448 GLEAN mRNA 777506 778807 0.999624 + . ID=CGI_10024962; scaffold448 TRF Tandem_Repeat 777506 778807 1559 + . . scaffold448 GLEAN mRNA 778845 779922 0.999624 + . ID=CGI_10024962; scaffold448 TRF Tandem_Repeat 778845 779922 1238 + . . scaffold448 GLEAN mRNA 826180 826386 0.790053 - . ID=CGI_10024963; scaffold448 TRF Tandem_Repeat 826180 826386 224 + . . scaffold448 GLEAN mRNA 826180 826385 0.790053 - . ID=CGI_10024963; scaffold448 TRF Tandem_Repeat 826180 826385 306 + . . scaffold448 GLEAN mRNA 827255 827523 0.790053 - . ID=CGI_10024963; scaffold448 TRF Tandem_Repeat 827255 827523 341 + . . scaffold448 GLEAN mRNA 841164 841205 1 + . ID=CGI_10024964; scaffold448 TRF Tandem_Repeat 841164 841205 84 + . . scaffold448 GLEAN mRNA 870126 870159 0.999949 - . ID=CGI_10024966; scaffold448 TRF Tandem_Repeat 870126 870159 61 + . . scaffold448 GLEAN mRNA 871782 871809 0.999949 - . ID=CGI_10024966; scaffold448 TRF Tandem_Repeat 871782 871809 56 + . . scaffold448 GLEAN mRNA 883699 884043 0.681651 - . ID=CGI_10024967; scaffold448 TRF Tandem_Repeat 883699 884043 344 + . . scaffold448 GLEAN mRNA 883699 884043 0.681651 - . ID=CGI_10024967; scaffold448 TRF Tandem_Repeat 883699 884043 310 + . . scaffold448 GLEAN mRNA 921705 921774 0.986391 - . ID=CGI_10024970; scaffold448 TRF Tandem_Repeat 921705 921774 140 + . . scaffold448 GLEAN mRNA 941743 941860 0.986391 - . ID=CGI_10024970; scaffold448 TRF Tandem_Repeat 941743 941860 92 + . . scaffold448 GLEAN mRNA 941785 941872 0.986391 - . ID=CGI_10024970; scaffold448 TRF Tandem_Repeat 941785 941872 176 + . . scaffold448 GLEAN mRNA 921705 921774 0.988135 + . ID=CGI_10024971; scaffold448 TRF Tandem_Repeat 921705 921774 140 + . . scaffold448 GLEAN mRNA 964607 964688 0.819728 + . ID=CGI_10024972; scaffold448 TRF Tandem_Repeat 964607 964688 157 + . . scaffold448 GLEAN mRNA 983617 983658 1 + . ID=CGI_10024974; scaffold448 TRF Tandem_Repeat 983617 983658 59 + . . scaffold1017 GLEAN mRNA 3128 4381 1 - . ID=CGI_10024977; scaffold1017 WUBlastX LINE_L1-Tx1 3128 4381 357 + . . scaffold1017 GLEAN mRNA 3071 3406 1 - . ID=CGI_10024977; scaffold1017 WUBlastX LINE_L1 3071 3406 28 + . . scaffold1017 GLEAN mRNA 11243 11283 0.999879 - . ID=CGI_10024978; scaffold1017 TRF Tandem_Repeat 11243 11283 55 + . . scaffold1017 GLEAN mRNA 58627 58827 0.999676 - . ID=CGI_10024980; scaffold1017 WUBlastX LINE_RTE-X 58627 58827 85 - . . scaffold1017 GLEAN mRNA 58507 58833 0.999676 - . ID=CGI_10024980; scaffold1017 WUBlastX LINE_RTE-X 58507 58833 34 - . . scaffold1017 GLEAN mRNA 95667 96480 0.662353 + . ID=CGI_10024982; scaffold1017 TRF Tandem_Repeat 95667 96480 1385 + . . scaffold1017 GLEAN mRNA 97225 97929 0.662353 + . ID=CGI_10024982; scaffold1017 TRF Tandem_Repeat 97225 97929 911 + . . scaffold1017 GLEAN mRNA 97221 97929 0.662353 + . ID=CGI_10024982; scaffold1017 TRF Tandem_Repeat 97221 97929 1149 + . . scaffold1017 GLEAN mRNA 106287 106349 0.662353 + . ID=CGI_10024982; scaffold1017 TRF Tandem_Repeat 106287 106349 55 + . . scaffold1017 GLEAN mRNA 111598 111855 0.662353 + . ID=CGI_10024982; scaffold1017 TRF Tandem_Repeat 111598 111855 394 + . . scaffold1017 GLEAN mRNA 114815 114846 0.662353 + . ID=CGI_10024982; scaffold1017 TRF Tandem_Repeat 114815 114846 55 + . . scaffold1017 GLEAN mRNA 121699 121749 0.662353 + . ID=CGI_10024982; scaffold1017 TRF Tandem_Repeat 121699 121749 102 + . . scaffold1017 GLEAN mRNA 123178 123214 0.662353 + . ID=CGI_10024982; scaffold1017 TRF Tandem_Repeat 123178 123214 74 + . . scaffold1017 GLEAN mRNA 129967 131082 0.662353 + . ID=CGI_10024982; scaffold1017 TRF Tandem_Repeat 129967 131082 1739 + . . scaffold1017 GLEAN mRNA 143713 143916 0.847837 - . ID=CGI_10024983; scaffold1017 TRF Tandem_Repeat 143713 143916 345 + . . scaffold1017 GLEAN mRNA 148235 148499 0.847837 - . ID=CGI_10024983; scaffold1017 TRF Tandem_Repeat 148235 148499 291 + . . scaffold1017 GLEAN mRNA 149318 149454 0.847837 - . ID=CGI_10024983; scaffold1017 TRF Tandem_Repeat 149318 149454 172 + . . scaffold1017 GLEAN mRNA 187626 187809 0.999675 + . ID=CGI_10024986; scaffold1017 TRF Tandem_Repeat 187626 187809 282 + . . scaffold1017 GLEAN mRNA 194427 194582 0.999675 + . ID=CGI_10024986; scaffold1017 TRF Tandem_Repeat 194427 194582 145 + . . scaffold1017 GLEAN mRNA 190946 191086 0.999675 + . ID=CGI_10024986; scaffold1017 WUBlastX LTR_Copia 190946 191086 26 + . . scaffold1017 GLEAN mRNA 205582 205709 0.813837 - . ID=CGI_10024987; scaffold1017 TRF Tandem_Repeat 205582 205709 109 + . . scaffold1017 GLEAN mRNA 218189 218933 0.911131 + . ID=CGI_10024989; scaffold1017 TRF Tandem_Repeat 218189 218933 1224 + . . scaffold1017 GLEAN mRNA 241759 241797 0.911131 + . ID=CGI_10024989; scaffold1017 TRF Tandem_Repeat 241759 241797 78 + . . scaffold1017 GLEAN mRNA 245450 245507 0.993907 - . ID=CGI_10024990; scaffold1017 TRF Tandem_Repeat 245450 245507 116 + . . scaffold1017 GLEAN mRNA 274979 275012 0.406733 + . ID=CGI_10024993; scaffold1017 TRF Tandem_Repeat 274979 275012 52 + . . scaffold1017 GLEAN mRNA 279273 279316 1 + . ID=CGI_10024994; scaffold1017 TRF Tandem_Repeat 279273 279316 79 + . . scaffold1017 GLEAN mRNA 285562 285622 1 + . ID=CGI_10024994; scaffold1017 TRF Tandem_Repeat 285562 285622 122 + . . scaffold1017 GLEAN mRNA 289077 289114 1 + . ID=CGI_10024994; scaffold1017 TRF Tandem_Repeat 289077 289114 58 + . . scaffold1017 GLEAN mRNA 289069 289111 1 + . ID=CGI_10024994; scaffold1017 TRF Tandem_Repeat 289069 289111 50 + . . scaffold1017 GLEAN mRNA 357742 357776 0.999855 + . ID=CGI_10025000; scaffold1017 TRF Tandem_Repeat 357742 357776 70 + . . scaffold1017 GLEAN mRNA 360101 360132 0.999855 + . ID=CGI_10025000; scaffold1017 TRF Tandem_Repeat 360101 360132 64 + . . scaffold1017 GLEAN mRNA 390919 391094 1 + . ID=CGI_10025004; scaffold1017 TRF Tandem_Repeat 390919 391094 90 + . . scaffold1017 GLEAN mRNA 403903 404178 0.940982 - . ID=CGI_10025006; scaffold1017 WUBlastX LINE_L2 403903 404178 76 + . . scaffold1017 GLEAN mRNA 417503 417578 0.940982 - . ID=CGI_10025006; scaffold1017 TRF Tandem_Repeat 417503 417578 152 + . . scaffold1017 GLEAN mRNA 427053 427113 0.54139 - . ID=CGI_10025007; scaffold1017 TRF Tandem_Repeat 427053 427113 115 + . . scaffold1017 GLEAN mRNA 433168 433219 0.54139 - . ID=CGI_10025007; scaffold1017 TRF Tandem_Repeat 433168 433219 95 + . . scaffold1017 GLEAN mRNA 453556 454122 0.54139 - . ID=CGI_10025007; scaffold1017 TRF Tandem_Repeat 453556 454122 301 + . . scaffold1017 GLEAN mRNA 453587 454119 0.54139 - . ID=CGI_10025007; scaffold1017 TRF Tandem_Repeat 453587 454119 282 + . . scaffold1017 GLEAN mRNA 453603 453764 0.54139 - . ID=CGI_10025007; scaffold1017 TRF Tandem_Repeat 453603 453764 135 + . . scaffold1017 GLEAN mRNA 453818 454132 0.54139 - . ID=CGI_10025007; scaffold1017 TRF Tandem_Repeat 453818 454132 377 + . . scaffold1017 GLEAN mRNA 454965 456251 0.54139 - . ID=CGI_10025007; scaffold1017 TRF Tandem_Repeat 454965 456251 1188 + . . scaffold1017 GLEAN mRNA 464460 464506 0.54139 - . ID=CGI_10025007; scaffold1017 TRF Tandem_Repeat 464460 464506 51 + . . scaffold1017 GLEAN mRNA 433168 433219 0.999949 + . ID=CGI_10025008; scaffold1017 TRF Tandem_Repeat 433168 433219 95 + . . scaffold1017 GLEAN mRNA 472544 472610 0.618241 + . ID=CGI_10025009; scaffold1017 WUBlastX LINE_L2 472544 472849 62 + . . scaffold1017 GLEAN mRNA 472470 472589 0.618241 + . ID=CGI_10025009; scaffold1017 WUBlastX LINE_L2 472470 472589 22 + . . scaffold1017 GLEAN mRNA 475412 475547 0.986045 - . ID=CGI_10025010; scaffold1017 TRF Tandem_Repeat 475412 475547 139 + . . scaffold1017 GLEAN mRNA 475452 475576 0.986045 - . ID=CGI_10025010; scaffold1017 TRF Tandem_Repeat 475452 475576 128 + . . scaffold1017 GLEAN mRNA 476317 476350 0.986045 - . ID=CGI_10025010; scaffold1017 TRF Tandem_Repeat 476317 476350 50 + . . scaffold1017 GLEAN mRNA 480864 480919 0.986045 - . ID=CGI_10025010; scaffold1017 TRF Tandem_Repeat 480864 480919 53 + . . scaffold1017 GLEAN mRNA 506903 506972 0.653968 + . ID=CGI_10025013; scaffold1017 TRF Tandem_Repeat 506903 506972 131 + . . scaffold1017 GLEAN mRNA 524039 524135 0.777349 - . ID=CGI_10025014; scaffold1017 TRF Tandem_Repeat 524039 524135 56 + . . scaffold1017 GLEAN mRNA 524055 524151 0.777349 - . ID=CGI_10025014; scaffold1017 TRF Tandem_Repeat 524055 524151 81 + . . scaffold1017 GLEAN mRNA 538869 538973 1 + . ID=CGI_10025015; scaffold1017 WUBlastX LTR_Pao 538845 538973 78 + . . scaffold1017 GLEAN mRNA 539864 539989 1 + . ID=CGI_10025015; scaffold1017 WUBlastX LTR_Pao 539864 539989 55 + . . scaffold1017 GLEAN mRNA 550525 550579 0.728754 + . ID=CGI_10025016; scaffold1017 TRF Tandem_Repeat 550525 550579 110 + . . scaffold1017 GLEAN mRNA 591981 592009 0.950882 + . ID=CGI_10025018; scaffold1017 TRF Tandem_Repeat 591981 592009 58 + . . scaffold1017 GLEAN mRNA 616435 616490 0.732035 + . ID=CGI_10025019; scaffold1017 TRF Tandem_Repeat 616435 616490 103 + . . scaffold1017 GLEAN mRNA 651136 651181 0.998291 + . ID=CGI_10025022; scaffold1017 TRF Tandem_Repeat 651136 651181 92 + . . scaffold1017 GLEAN mRNA 651811 651840 0.998291 + . ID=CGI_10025022; scaffold1017 TRF Tandem_Repeat 651811 651840 60 + . . scaffold1017 GLEAN mRNA 756752 757353 1 - . ID=CGI_10025025; scaffold1017 TRF Tandem_Repeat 756752 757353 692 + . . scaffold1017 GLEAN mRNA 756752 757353 1 - . ID=CGI_10025025; scaffold1017 TRF Tandem_Repeat 756752 757353 814 + . . scaffold1017 GLEAN mRNA 763714 763764 1 - . ID=CGI_10025025; scaffold1017 TRF Tandem_Repeat 763714 763764 95 + . . scaffold1017 GLEAN mRNA 781080 781292 0.991247 + . ID=CGI_10025027; scaffold1017 WUBlastX DNA_hAT 781080 781292 57 + . . scaffold1017 GLEAN mRNA 781882 782343 0.991247 + . ID=CGI_10025027; scaffold1017 WUBlastX DNA_hAT 781882 782343 24 + . . scaffold1017 GLEAN mRNA 819284 819430 1 - . ID=CGI_10025030; scaffold1017 TRF Tandem_Repeat 819284 819430 167 + . . scaffold1017 GLEAN mRNA 820248 821043 1 - . ID=CGI_10025030; scaffold1017 TRF Tandem_Repeat 820248 821043 1145 + . . scaffold1017 GLEAN mRNA 820248 821043 1 - . ID=CGI_10025030; scaffold1017 TRF Tandem_Repeat 820248 821043 1152 + . . scaffold1017 GLEAN mRNA 820248 821043 1 - . ID=CGI_10025030; scaffold1017 TRF Tandem_Repeat 820248 821043 1150 + . . scaffold1017 GLEAN mRNA 822424 822599 1 - . ID=CGI_10025030; scaffold1017 TRF Tandem_Repeat 822424 822599 271 + . . scaffold1017 GLEAN mRNA 846489 846815 0.764581 + . ID=CGI_10025032; scaffold1017 TRF Tandem_Repeat 846489 846815 370 + . . scaffold1017 GLEAN mRNA 934009 935092 0.859297 + . ID=CGI_10025034; scaffold1017 TRF Tandem_Repeat 934009 935092 907 + . . scaffold1017 GLEAN mRNA 933966 935070 0.859297 + . ID=CGI_10025034; scaffold1017 TRF Tandem_Repeat 933966 935070 507 + . . scaffold1017 GLEAN mRNA 934303 935092 0.859297 + . ID=CGI_10025034; scaffold1017 TRF Tandem_Repeat 934303 935092 823 + . . scaffold1017 GLEAN mRNA 934073 935092 0.859297 + . ID=CGI_10025034; scaffold1017 TRF Tandem_Repeat 934073 935092 772 + . . scaffold1017 GLEAN mRNA 937515 937547 0.859297 + . ID=CGI_10025034; scaffold1017 TRF Tandem_Repeat 937515 937547 66 + . . scaffold1017 GLEAN mRNA 941875 942138 0.859297 + . ID=CGI_10025034; scaffold1017 TRF Tandem_Repeat 941875 942138 476 + . . scaffold1017 GLEAN mRNA 953721 954326 0.859297 + . ID=CGI_10025034; scaffold1017 TRF Tandem_Repeat 953721 954326 737 + . . scaffold1017 GLEAN mRNA 967391 967446 0.859297 + . ID=CGI_10025034; scaffold1017 TRF Tandem_Repeat 967391 967446 94 + . . scaffold1017 GLEAN mRNA 1001891 1001946 0.999949 + . ID=CGI_10025035; scaffold1017 TRF Tandem_Repeat 1001891 1001946 112 + . . scaffold107 GLEAN mRNA 13903 13945 0.999806 - . ID=CGI_10025039; scaffold107 TRF Tandem_Repeat 13903 13945 77 + . . scaffold107 GLEAN mRNA 47162 47213 0.999806 - . ID=CGI_10025040; scaffold107 TRF Tandem_Repeat 47162 47213 70 + . . scaffold107 GLEAN mRNA 143553 143597 0.896861 - . ID=CGI_10025044; scaffold107 TRF Tandem_Repeat 143553 143597 90 + . . scaffold107 GLEAN mRNA 135482 135763 0.896861 - . ID=CGI_10025044; scaffold107 WUBlastX RC_Helitron 135482 135763 86 - . . scaffold107 GLEAN mRNA 309428 309475 0.570212 + . ID=CGI_10025050; scaffold107 TRF Tandem_Repeat 309428 309475 69 + . . scaffold107 GLEAN mRNA 310526 310621 0.570212 + . ID=CGI_10025050; scaffold107 TRF Tandem_Repeat 310526 310621 183 + . . scaffold107 GLEAN mRNA 315103 315212 0.570212 + . ID=CGI_10025050; scaffold107 TRF Tandem_Repeat 315103 315212 143 + . . scaffold107 GLEAN mRNA 329216 329254 1 + . ID=CGI_10025051; scaffold107 TRF Tandem_Repeat 329216 329254 78 + . . scaffold107 GLEAN mRNA 458504 458533 0.986168 - . ID=CGI_10025055; scaffold107 TRF Tandem_Repeat 458504 458533 51 + . . scaffold107 GLEAN mRNA 460621 460669 0.986168 - . ID=CGI_10025055; scaffold107 TRF Tandem_Repeat 460621 460669 98 + . . scaffold107 GLEAN mRNA 464390 464414 0.986168 - . ID=CGI_10025055; scaffold107 TRF Tandem_Repeat 464390 464414 50 + . . scaffold107 GLEAN mRNA 458823 459569 0.986168 - . ID=CGI_10025055; scaffold107 WUBlastX LINE_RTE-X 458823 459569 233 - . . scaffold107 GLEAN mRNA 458823 459815 0.986168 - . ID=CGI_10025055; scaffold107 WUBlastX LINE_RTE-X 458823 459815 148 - . . scaffold107 GLEAN mRNA 488484 488533 0.436429 + . ID=CGI_10025056; scaffold107 TRF Tandem_Repeat 488484 488533 100 + . . scaffold107 GLEAN mRNA 495681 495842 0.436429 + . ID=CGI_10025056; scaffold107 WUBlastX LINE_RTE-X 495681 495842 33 + . . scaffold107 GLEAN mRNA 495753 495842 0.436429 + . ID=CGI_10025056; scaffold107 WUBlastX LINE_RTE-X 495753 495842 40 + . . scaffold107 GLEAN mRNA 496035 496829 0.436429 + . ID=CGI_10025056; scaffold107 WUBlastX LINE_RTE-X 496035 496829 47 + . . scaffold107 GLEAN mRNA 496849 496880 0.436429 + . ID=CGI_10025056; scaffold107 WUBlastX LINE_RTE-X 496849 496995 29 + . . scaffold107 GLEAN mRNA 513892 513942 0.999676 - . ID=CGI_10025057; scaffold107 TRF Tandem_Repeat 513892 513942 56 + . . scaffold107 GLEAN mRNA 513892 513950 0.999676 - . ID=CGI_10025057; scaffold107 TRF Tandem_Repeat 513892 513950 52 + . . scaffold107 GLEAN mRNA 514791 514843 0.999676 - . ID=CGI_10025057; scaffold107 TRF Tandem_Repeat 514791 514843 52 + . . scaffold107 GLEAN mRNA 517665 517703 1 + . ID=CGI_10025058; scaffold107 TRF Tandem_Repeat 517665 517703 78 + . . scaffold107 GLEAN mRNA 541735 541770 0.990768 - . ID=CGI_10025059; scaffold107 TRF Tandem_Repeat 541735 541770 54 + . . scaffold107 GLEAN mRNA 555649 555696 0.592352 + . ID=CGI_10025060; scaffold107 TRF Tandem_Repeat 555649 555696 60 + . . scaffold107 GLEAN mRNA 551638 551982 0.592352 + . ID=CGI_10025060; scaffold107 WUBlastX LTR_Pao 551638 551982 58 - . . scaffold107 GLEAN mRNA 551668 552039 0.592352 + . ID=CGI_10025060; scaffold107 WUBlastX LTR_Pao 551668 552039 29 - . . scaffold107 GLEAN mRNA 569640 569676 0.792407 + . ID=CGI_10025062; scaffold107 TRF Tandem_Repeat 569640 569676 74 + . . scaffold107 GLEAN mRNA 570890 570935 0.792407 + . ID=CGI_10025062; scaffold107 TRF Tandem_Repeat 570890 570935 92 + . . scaffold107 GLEAN mRNA 571307 571344 0.792407 + . ID=CGI_10025062; scaffold107 TRF Tandem_Repeat 571307 571344 60 + . . scaffold107 GLEAN mRNA 572773 572974 0.792407 + . ID=CGI_10025062; scaffold107 TRF Tandem_Repeat 572773 572974 84 + . . scaffold107 GLEAN mRNA 602989 603048 0.844534 - . ID=CGI_10025066; scaffold107 TRF Tandem_Repeat 602989 603048 120 + . . scaffold107 GLEAN mRNA 603112 603141 0.844534 - . ID=CGI_10025066; scaffold107 TRF Tandem_Repeat 603112 603141 60 + . . scaffold107 GLEAN mRNA 631674 631739 0.458439 - . ID=CGI_10025068; scaffold107 TRF Tandem_Repeat 631674 631739 123 + . . scaffold107 GLEAN mRNA 634153 634188 0.458439 - . ID=CGI_10025068; scaffold107 TRF Tandem_Repeat 634153 634188 63 + . . scaffold107 GLEAN mRNA 693305 693335 0.913521 + . ID=CGI_10025073; scaffold107 TRF Tandem_Repeat 693305 693335 53 + . . scaffold107 GLEAN mRNA 946099 946196 1 + . ID=CGI_10025076; scaffold107 TRF Tandem_Repeat 946099 946196 160 + . . scaffold107 GLEAN mRNA 981127 981830 0.535457 - . ID=CGI_10025077; scaffold107 TRF Tandem_Repeat 981127 981830 855 + . . scaffold107 GLEAN mRNA 983250 983605 0.535457 - . ID=CGI_10025077; scaffold107 TRF Tandem_Repeat 983250 983605 358 + . . scaffold107 GLEAN mRNA 1012629 1012691 0.33291 + . ID=CGI_10025080; scaffold107 TRF Tandem_Repeat 1012629 1012691 60 + . . scaffold107 GLEAN mRNA 1016300 1016349 0.33291 + . ID=CGI_10025080; scaffold107 TRF Tandem_Repeat 1016300 1016349 57 + . . scaffold107 GLEAN mRNA 1016522 1017267 0.33291 + . ID=CGI_10025080; scaffold107 TRF Tandem_Repeat 1016522 1017267 1223 + . . scaffold241 GLEAN mRNA 20313 20411 0.325403 + . ID=CGI_10025082; scaffold241 TRF Tandem_Repeat 20313 20411 81 + . . scaffold241 GLEAN mRNA 51022 51065 0.9976 + . ID=CGI_10025089; scaffold241 TRF Tandem_Repeat 51022 51065 65 + . . scaffold241 GLEAN mRNA 64967 65230 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 64967 65230 28 - . . scaffold241 GLEAN mRNA 63742 63855 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 63742 63855 58 - . . scaffold241 GLEAN mRNA 63855 64793 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 63855 64793 455 - . . scaffold241 GLEAN mRNA 64770 64916 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 64770 64916 39 - . . scaffold241 GLEAN mRNA 64913 65188 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 64913 65188 139 - . . scaffold241 GLEAN mRNA 62770 63066 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 62770 63066 172 - . . scaffold241 GLEAN mRNA 63030 63407 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 63030 63407 181 - . . scaffold241 GLEAN mRNA 63402 63584 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 63402 63584 136 - . . scaffold241 GLEAN mRNA 76018 76099 0.9966 + . ID=CGI_10025090; scaffold241 TRF Tandem_Repeat 76018 76099 148 + . . scaffold241 GLEAN mRNA 65337 65849 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 65337 65849 189 - . . scaffold241 GLEAN mRNA 84611 84973 0.534439 + . ID=CGI_10025091; scaffold241 WUBlastX LTR_Pao 84611 84973 290 + . . scaffold241 GLEAN mRNA 83866 84141 0.534439 + . ID=CGI_10025091; scaffold241 WUBlastX LTR_Pao 83866 84141 194 + . . scaffold241 GLEAN mRNA 82338 83054 0.534439 + . ID=CGI_10025091; scaffold241 WUBlastX LTR_Pao 82338 83054 228 + . . scaffold241 GLEAN mRNA 83174 83869 0.534439 + . ID=CGI_10025091; scaffold241 WUBlastX LTR_Pao 83174 83869 256 + . . scaffold241 GLEAN mRNA 84135 84611 0.534439 + . ID=CGI_10025091; scaffold241 WUBlastX LTR_Pao 84135 84611 321 + . . scaffold241 GLEAN mRNA 82470 83048 0.534439 + . ID=CGI_10025091; scaffold241 WUBlastX LTR_Pao 82470 83048 321 + . . scaffold241 GLEAN mRNA 84952 86841 0.534439 + . ID=CGI_10025091; scaffold241 WUBlastX LTR_Pao 84952 86841 634 + . . scaffold241 GLEAN mRNA 82533 83162 0.534439 + . ID=CGI_10025091; scaffold241 WUBlastX LTR_Pao 82533 83162 309 + . . scaffold241 GLEAN mRNA 99113 99156 0.534439 + . ID=CGI_10025091; scaffold241 TRF Tandem_Repeat 99113 99156 88 + . . scaffold241 GLEAN mRNA 111314 111343 0.55536 + . ID=CGI_10025092; scaffold241 TRF Tandem_Repeat 111314 111343 60 + . . scaffold241 GLEAN mRNA 124731 125060 0.55536 + . ID=CGI_10025092; scaffold241 WUBlastX LINE_L1-Tx1 124731 125060 44 - . . scaffold241 GLEAN mRNA 124806 125078 0.55536 + . ID=CGI_10025092; scaffold241 WUBlastX LINE_L1 124806 125078 46 - . . scaffold241 GLEAN mRNA 125084 125791 0.55536 + . ID=CGI_10025092; scaffold241 WUBlastX LINE_L1-Tx1 125084 125791 59 - . . scaffold241 GLEAN mRNA 126079 127176 0.55536 + . ID=CGI_10025092; scaffold241 WUBlastX LINE_L1-Tx1 126079 127176 92 - . . scaffold241 GLEAN mRNA 125817 126035 0.55536 + . ID=CGI_10025092; scaffold241 WUBlastX LINE_L1 125817 126035 53 - . . scaffold241 GLEAN mRNA 124830 125000 0.55536 + . ID=CGI_10025092; scaffold241 WUBlastX LINE_L1 124830 125000 62 - . . scaffold241 GLEAN mRNA 135435 135482 0.55536 + . ID=CGI_10025092; scaffold241 TRF Tandem_Repeat 135435 135482 78 + . . scaffold241 GLEAN mRNA 178341 178625 0.702385 + . ID=CGI_10025093; scaffold241 TRF Tandem_Repeat 178341 178625 276 + . . scaffold241 GLEAN mRNA 178441 178655 0.702385 + . ID=CGI_10025093; scaffold241 TRF Tandem_Repeat 178441 178655 128 + . . scaffold241 GLEAN mRNA 178497 178656 0.702385 + . ID=CGI_10025093; scaffold241 TRF Tandem_Repeat 178497 178656 212 + . . scaffold241 GLEAN mRNA 182291 182321 0.702385 + . ID=CGI_10025093; scaffold241 TRF Tandem_Repeat 182291 182321 53 + . . scaffold241 GLEAN mRNA 206511 207370 1 - . ID=CGI_10025095; scaffold241 TRF Tandem_Repeat 206511 207370 839 + . . scaffold241 GLEAN mRNA 206517 207370 1 - . ID=CGI_10025095; scaffold241 TRF Tandem_Repeat 206517 207370 848 + . . scaffold241 GLEAN mRNA 207854 208107 1 - . ID=CGI_10025095; scaffold241 TRF Tandem_Repeat 207854 208107 311 + . . scaffold241 GLEAN mRNA 210825 210861 1 - . ID=CGI_10025095; scaffold241 TRF Tandem_Repeat 210825 210861 74 + . . scaffold241 GLEAN mRNA 195547 197082 1 - . ID=CGI_10025095; scaffold241 TRF Tandem_Repeat 195547 197082 2079 + . . scaffold241 GLEAN mRNA 213778 213812 1 + . ID=CGI_10025096; scaffold241 TRF Tandem_Repeat 213778 213812 70 + . . scaffold241 GLEAN mRNA 213919 213955 1 + . ID=CGI_10025096; scaffold241 TRF Tandem_Repeat 213919 213955 65 + . . scaffold241 GLEAN mRNA 226477 226597 0.493032 - . ID=CGI_10025097; scaffold241 TRF Tandem_Repeat 226477 226597 199 + . . scaffold241 GLEAN mRNA 227972 228792 0.493032 - . ID=CGI_10025097; scaffold241 TRF Tandem_Repeat 227972 228792 1036 + . . scaffold241 GLEAN mRNA 230238 230299 0.493032 - . ID=CGI_10025097; scaffold241 TRF Tandem_Repeat 230238 230299 81 + . . scaffold241 GLEAN mRNA 231910 231966 0.493032 - . ID=CGI_10025097; scaffold241 TRF Tandem_Repeat 231910 231966 57 + . . scaffold241 GLEAN mRNA 231896 231975 0.493032 - . ID=CGI_10025097; scaffold241 TRF Tandem_Repeat 231896 231975 51 + . . scaffold241 GLEAN mRNA 288022 288378 0.999802 - . ID=CGI_10025101; scaffold241 WUBlastX DNA_TcMar-Tc2 288022 288378 76 - . . scaffold241 GLEAN mRNA 288181 288459 0.999802 - . ID=CGI_10025101; scaffold241 WUBlastX DNA_TcMar-Fot1 288181 288507 76 - . . scaffold241 GLEAN mRNA 288205 288459 0.999802 - . ID=CGI_10025101; scaffold241 WUBlastX DNA_TcMar-Fot1 288205 288576 52 - . . scaffold241 GLEAN mRNA 392152 392511 0.495388 - . ID=CGI_10025102; scaffold241 WUBlastX DNA_NOF 392152 392511 119 - . . scaffold241 GLEAN mRNA 391957 392625 0.495388 - . ID=CGI_10025102; scaffold241 WUBlastX DNA_NOF 391957 392625 91 - . . scaffold241 GLEAN mRNA 395978 397461 0.495388 - . ID=CGI_10025102; scaffold241 TRF Tandem_Repeat 395978 397461 947 + . . scaffold241 GLEAN mRNA 396053 397461 0.495388 - . ID=CGI_10025102; scaffold241 TRF Tandem_Repeat 396053 397461 626 + . . scaffold241 GLEAN mRNA 395940 397546 0.495388 - . ID=CGI_10025102; scaffold241 TRF Tandem_Repeat 395940 397546 1718 + . . scaffold241 GLEAN mRNA 395940 397461 0.495388 - . ID=CGI_10025102; scaffold241 TRF Tandem_Repeat 395940 397461 1715 + . . scaffold241 GLEAN mRNA 393567 393746 0.495388 - . ID=CGI_10025102; scaffold241 WUBlastX DNA_MuDR 393567 393746 107 - . . scaffold241 GLEAN mRNA 393582 393728 0.495388 - . ID=CGI_10025102; scaffold241 WUBlastX DNA_NOF 393582 393728 107 - . . scaffold241 GLEAN mRNA 394008 394316 0.495388 - . ID=CGI_10025102; scaffold241 WUBlastX DNA_NOF 394008 394316 266 - . . scaffold241 GLEAN mRNA 394664 394849 0.495388 - . ID=CGI_10025102; scaffold241 WUBlastX DNA_NOF 394664 394849 49 - . . scaffold241 GLEAN mRNA 513492 513650 0.999998 + . ID=CGI_10025111; scaffold241 TRF Tandem_Repeat 513492 513650 122 + . . scaffold241 GLEAN mRNA 513553 513665 0.999998 + . ID=CGI_10025111; scaffold241 TRF Tandem_Repeat 513553 513665 93 + . . scaffold241 GLEAN mRNA 554228 554364 1 - . ID=CGI_10025113; scaffold241 TRF Tandem_Repeat 554228 554364 223 + . . scaffold241 GLEAN mRNA 557065 557297 1 - . ID=CGI_10025113; scaffold241 TRF Tandem_Repeat 557065 557297 385 + . . scaffold241 GLEAN mRNA 558740 558779 1 - . ID=CGI_10025113; scaffold241 TRF Tandem_Repeat 558740 558779 80 + . . scaffold241 GLEAN mRNA 570712 571005 1 - . ID=CGI_10025113; scaffold241 TRF Tandem_Repeat 570712 571005 516 + . . scaffold241 GLEAN mRNA 571628 571896 1 - . ID=CGI_10025113; scaffold241 TRF Tandem_Repeat 571628 571896 270 + . . scaffold241 GLEAN mRNA 571628 571896 1 - . ID=CGI_10025113; scaffold241 TRF Tandem_Repeat 571628 571896 346 + . . scaffold241 GLEAN mRNA 588547 588584 0.99935 - . ID=CGI_10025114; scaffold241 TRF Tandem_Repeat 588547 588584 76 + . . scaffold241 GLEAN mRNA 591437 591975 0.99935 - . ID=CGI_10025114; scaffold241 TRF Tandem_Repeat 591437 591975 228 + . . scaffold241 GLEAN mRNA 591498 591979 0.99935 - . ID=CGI_10025114; scaffold241 TRF Tandem_Repeat 591498 591979 340 + . . scaffold241 GLEAN mRNA 601558 601595 0.99935 - . ID=CGI_10025114; scaffold241 TRF Tandem_Repeat 601558 601595 76 + . . scaffold241 GLEAN mRNA 611745 611790 0.99935 - . ID=CGI_10025114; scaffold241 TRF Tandem_Repeat 611745 611790 92 + . . scaffold241 GLEAN mRNA 676136 676263 0.998968 + . ID=CGI_10025116; scaffold241 TRF Tandem_Repeat 676136 676263 141 + . . scaffold241 GLEAN mRNA 679718 679875 0.998968 + . ID=CGI_10025116; scaffold241 TRF Tandem_Repeat 679718 679875 226 + . . scaffold241 GLEAN mRNA 682499 682629 0.998968 + . ID=CGI_10025116; scaffold241 TRF Tandem_Repeat 682499 682629 262 + . . scaffold241 GLEAN mRNA 683272 683340 0.998968 + . ID=CGI_10025116; scaffold241 TRF Tandem_Repeat 683272 683340 58 + . . scaffold241 GLEAN mRNA 694589 694624 0.998968 + . ID=CGI_10025116; scaffold241 TRF Tandem_Repeat 694589 694624 72 + . . scaffold241 GLEAN mRNA 703744 703792 0.618463 + . ID=CGI_10025117; scaffold241 TRF Tandem_Repeat 703744 703792 98 + . . scaffold241 GLEAN mRNA 716695 716720 0.618463 + . ID=CGI_10025117; scaffold241 TRF Tandem_Repeat 716695 716720 52 + . . scaffold241 GLEAN mRNA 799271 799307 0.997621 - . ID=CGI_10025124; scaffold241 TRF Tandem_Repeat 799271 799307 74 + . . scaffold241 GLEAN mRNA 814493 814525 0.999598 - . ID=CGI_10025126; scaffold241 TRF Tandem_Repeat 814493 814525 59 + . . scaffold241 GLEAN mRNA 830298 831044 0.515736 + . ID=CGI_10025128; scaffold241 TRF Tandem_Repeat 830298 831044 937 + . . scaffold241 GLEAN mRNA 885240 885324 0.988213 - . ID=CGI_10025129; scaffold241 TRF Tandem_Repeat 885240 885324 100 + . . scaffold241 GLEAN mRNA 885240 885302 0.988213 - . ID=CGI_10025129; scaffold241 TRF Tandem_Repeat 885240 885302 108 + . . scaffold241 GLEAN mRNA 912656 912683 0.999994 - . ID=CGI_10025130; scaffold241 TRF Tandem_Repeat 912656 912683 56 + . . scaffold241 GLEAN mRNA 936533 936720 0.985705 + . ID=CGI_10025131; scaffold241 TRF Tandem_Repeat 936533 936720 286 + . . scaffold241 GLEAN mRNA 996378 996441 1 - . ID=CGI_10025135; scaffold241 TRF Tandem_Repeat 996378 996441 128 + . . scaffold241 GLEAN mRNA 1029754 1029792 0.999938 - . ID=CGI_10025136; scaffold241 TRF Tandem_Repeat 1029754 1029792 78 + . . scaffold241 GLEAN mRNA 1032581 1032688 0.999938 - . ID=CGI_10025136; scaffold241 TRF Tandem_Repeat 1032581 1032688 126 + . . scaffold241 GLEAN mRNA 1032687 1032897 0.999938 - . ID=CGI_10025136; scaffold241 TRF Tandem_Repeat 1032687 1032897 178 + . . scaffold241 GLEAN mRNA 1032980 1033065 0.999938 - . ID=CGI_10025136; scaffold241 TRF Tandem_Repeat 1032980 1033065 109 + . . scaffold1267 GLEAN mRNA 29647 31034 0.541062 + . ID=CGI_10025137; scaffold1267 TRF Tandem_Repeat 29647 31034 1493 + . . scaffold1267 GLEAN mRNA 51589 51658 0.991325 - . ID=CGI_10025138; scaffold1267 TRF Tandem_Repeat 51589 51658 54 + . . scaffold1267 GLEAN mRNA 51589 51657 0.991325 - . ID=CGI_10025138; scaffold1267 TRF Tandem_Repeat 51589 51657 75 + . . scaffold1267 GLEAN mRNA 79721 79787 0.99991 + . ID=CGI_10025139; scaffold1267 TRF Tandem_Repeat 79721 79787 134 + . . scaffold1267 GLEAN mRNA 81005 81166 0.99991 + . ID=CGI_10025139; scaffold1267 TRF Tandem_Repeat 81005 81166 188 + . . scaffold1267 GLEAN mRNA 109436 109462 1 + . ID=CGI_10025141; scaffold1267 TRF Tandem_Repeat 109436 109462 54 + . . scaffold1267 GLEAN mRNA 165335 165384 1 + . ID=CGI_10025144; scaffold1267 TRF Tandem_Repeat 165335 165384 100 + . . scaffold1267 GLEAN mRNA 414602 414639 0.995186 + . ID=CGI_10025153; scaffold1267 TRF Tandem_Repeat 414602 414639 76 + . . scaffold1267 GLEAN mRNA 522149 522174 0.99935 - . ID=CGI_10025154; scaffold1267 TRF Tandem_Repeat 522149 522174 52 + . . scaffold1267 GLEAN mRNA 522402 522493 0.99935 - . ID=CGI_10025154; scaffold1267 TRF Tandem_Repeat 522402 522493 123 + . . scaffold1267 GLEAN mRNA 530700 530813 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 530700 530813 74 + . . scaffold1267 GLEAN mRNA 530720 530834 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 530720 530834 76 + . . scaffold1267 GLEAN mRNA 532361 532633 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 532361 532633 357 + . . scaffold1267 GLEAN mRNA 538542 538618 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 538542 538618 58 + . . scaffold1267 GLEAN mRNA 538614 538663 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 538614 538663 54 + . . scaffold1267 GLEAN mRNA 538685 538856 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 538685 538856 66 + . . scaffold1267 GLEAN mRNA 538838 538935 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 538838 538935 81 + . . scaffold1267 GLEAN mRNA 538806 538933 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 538806 538933 183 + . . scaffold1267 GLEAN mRNA 538802 538936 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 538802 538936 70 + . . scaffold1267 GLEAN mRNA 543181 543490 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 543181 543490 575 + . . scaffold1267 GLEAN mRNA 544725 545403 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 544725 545403 1061 + . . scaffold1267 GLEAN mRNA 545680 545867 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 545680 545867 367 + . . scaffold1267 GLEAN mRNA 545685 545859 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 545685 545859 53 + . . scaffold1267 GLEAN mRNA 548461 548510 0.724543 + . ID=CGI_10025157; scaffold1267 TRF Tandem_Repeat 548461 548510 100 + . . scaffold1267 GLEAN mRNA 552032 553387 0.724543 + . ID=CGI_10025157; scaffold1267 TRF Tandem_Repeat 552032 553387 1796 + . . scaffold1267 GLEAN mRNA 552032 553387 0.724543 + . ID=CGI_10025157; scaffold1267 TRF Tandem_Repeat 552032 553387 2117 + . . scaffold1267 GLEAN mRNA 552032 553387 0.724543 + . ID=CGI_10025157; scaffold1267 TRF Tandem_Repeat 552032 553387 2118 + . . scaffold1267 GLEAN mRNA 552732 553377 0.724543 + . ID=CGI_10025157; scaffold1267 TRF Tandem_Repeat 552732 553377 880 + . . scaffold1267 GLEAN mRNA 559378 559613 0.724543 + . ID=CGI_10025157; scaffold1267 TRF Tandem_Repeat 559378 559613 141 + . . scaffold1267 GLEAN mRNA 559376 559614 0.724543 + . ID=CGI_10025157; scaffold1267 TRF Tandem_Repeat 559376 559614 205 + . . scaffold1267 GLEAN mRNA 559726 559863 0.724543 + . ID=CGI_10025157; scaffold1267 TRF Tandem_Repeat 559726 559863 154 + . . scaffold1267 GLEAN mRNA 559779 559884 0.724543 + . ID=CGI_10025157; scaffold1267 TRF Tandem_Repeat 559779 559884 129 + . . scaffold1267 GLEAN mRNA 560175 560741 0.724543 + . ID=CGI_10025157; scaffold1267 TRF Tandem_Repeat 560175 560741 819 + . . scaffold1267 GLEAN mRNA 594887 595034 0.980173 + . ID=CGI_10025160; scaffold1267 TRF Tandem_Repeat 594887 595034 82 + . . scaffold1267 GLEAN mRNA 595172 595292 0.980173 + . ID=CGI_10025160; scaffold1267 TRF Tandem_Repeat 595172 595292 95 + . . scaffold1267 GLEAN mRNA 595234 595582 0.980173 + . ID=CGI_10025160; scaffold1267 TRF Tandem_Repeat 595234 595582 511 + . . scaffold1267 GLEAN mRNA 595367 595584 0.980173 + . ID=CGI_10025160; scaffold1267 TRF Tandem_Repeat 595367 595584 99 + . . scaffold1267 GLEAN mRNA 596391 596964 0.980173 + . ID=CGI_10025160; scaffold1267 TRF Tandem_Repeat 596391 596964 755 + . . scaffold1267 GLEAN mRNA 596430 596964 0.980173 + . ID=CGI_10025160; scaffold1267 TRF Tandem_Repeat 596430 596964 878 + . . scaffold1267 GLEAN mRNA 596802 596936 0.980173 + . ID=CGI_10025160; scaffold1267 TRF Tandem_Repeat 596802 596936 74 + . . scaffold1267 GLEAN mRNA 599849 599921 0.980173 + . ID=CGI_10025160; scaffold1267 TRF Tandem_Repeat 599849 599921 146 + . . scaffold1267 GLEAN mRNA 630539 630618 0.811452 + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 630539 630618 114 + . . scaffold1267 GLEAN mRNA 630538 630623 0.811452 + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 630538 630623 108 + . . scaffold1267 GLEAN mRNA 630535 630624 0.811452 + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 630535 630624 80 + . . scaffold1267 GLEAN mRNA 632174 632775 0.811452 + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 632174 632775 723 + . . scaffold1267 GLEAN mRNA 635598 635629 0.811452 + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 635598 635629 50 + . . scaffold1267 GLEAN mRNA 636315 636974 0.811452 + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 636315 636974 947 + . . scaffold1267 GLEAN mRNA 641851 642029 0.811452 + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 641851 642029 243 + . . scaffold1267 GLEAN mRNA 645010 645064 0.811452 + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 645010 645064 62 + . . scaffold1267 GLEAN mRNA 645915 646192 0.811452 + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 645915 646192 259 + . . scaffold1267 GLEAN mRNA 645979 646232 0.811452 + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 645979 646232 234 + . . scaffold1267 GLEAN mRNA 646186 646509 0.811452 + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 646186 646509 212 + . . scaffold1267 GLEAN mRNA 638576 639002 0.811452 + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 638576 639002 597 + . . scaffold1267 GLEAN mRNA 674299 674366 0.96195 + . ID=CGI_10025164; scaffold1267 TRF Tandem_Repeat 674299 674366 136 + . . scaffold1267 GLEAN mRNA 691378 691429 0.795629 + . ID=CGI_10025165; scaffold1267 TRF Tandem_Repeat 691378 691429 104 + . . scaffold1267 GLEAN mRNA 698875 699318 0.795629 + . ID=CGI_10025165; scaffold1267 TRF Tandem_Repeat 698875 699318 715 + . . scaffold1267 GLEAN mRNA 698875 699318 0.795629 + . ID=CGI_10025165; scaffold1267 TRF Tandem_Repeat 698875 699318 703 + . . scaffold1267 GLEAN mRNA 701980 702541 0.795629 + . ID=CGI_10025165; scaffold1267 TRF Tandem_Repeat 701980 702541 822 + . . scaffold1267 GLEAN mRNA 702712 703268 0.795629 + . ID=CGI_10025165; scaffold1267 TRF Tandem_Repeat 702712 703268 690 + . . scaffold1267 GLEAN mRNA 712860 713414 0.949718 - . ID=CGI_10025166; scaffold1267 TRF Tandem_Repeat 712860 713414 433 + . . scaffold1267 GLEAN mRNA 741734 743792 0.992619 - . ID=CGI_10025169; scaffold1267 TRF Tandem_Repeat 741734 743792 2114 + . . scaffold1267 GLEAN mRNA 743987 744201 0.992619 - . ID=CGI_10025169; scaffold1267 TRF Tandem_Repeat 743987 744201 188 + . . scaffold1267 GLEAN mRNA 745630 745831 0.992619 - . ID=CGI_10025169; scaffold1267 TRF Tandem_Repeat 745630 745831 167 + . . scaffold1267 GLEAN mRNA 745925 746913 0.992619 - . ID=CGI_10025169; scaffold1267 TRF Tandem_Repeat 745925 746913 1591 + . . scaffold1267 GLEAN mRNA 747763 750470 0.992619 - . ID=CGI_10025169; scaffold1267 TRF Tandem_Repeat 747763 750470 3324 + . . scaffold1267 GLEAN mRNA 747772 750470 0.992619 - . ID=CGI_10025169; scaffold1267 TRF Tandem_Repeat 747772 750470 4519 + . . scaffold1267 GLEAN mRNA 750307 750560 0.992619 - . ID=CGI_10025169; scaffold1267 TRF Tandem_Repeat 750307 750560 91 + . . scaffold1267 GLEAN mRNA 756991 757169 0.992619 - . ID=CGI_10025169; scaffold1267 TRF Tandem_Repeat 756991 757169 109 + . . scaffold1267 GLEAN mRNA 768870 768916 1 + . ID=CGI_10025170; scaffold1267 TRF Tandem_Repeat 768870 768916 58 + . . scaffold1267 GLEAN mRNA 843170 843520 0.642339 + . ID=CGI_10025173; scaffold1267 TRF Tandem_Repeat 843170 843520 403 + . . scaffold1267 GLEAN mRNA 843170 843512 0.642339 + . ID=CGI_10025173; scaffold1267 TRF Tandem_Repeat 843170 843512 402 + . . scaffold1267 GLEAN mRNA 843170 843520 0.642339 + . ID=CGI_10025173; scaffold1267 TRF Tandem_Repeat 843170 843520 578 + . . scaffold1267 GLEAN mRNA 845694 845728 0.642339 + . ID=CGI_10025173; scaffold1267 TRF Tandem_Repeat 845694 845728 70 + . . scaffold1267 GLEAN mRNA 846764 846866 0.642339 + . ID=CGI_10025173; scaffold1267 TRF Tandem_Repeat 846764 846866 179 + . . scaffold1267 GLEAN mRNA 847937 847983 0.642339 + . ID=CGI_10025173; scaffold1267 TRF Tandem_Repeat 847937 847983 58 + . . scaffold1267 GLEAN mRNA 864862 865194 0.648545 - . ID=CGI_10025174; scaffold1267 TRF Tandem_Repeat 864862 865194 468 + . . scaffold1267 GLEAN mRNA 866693 866732 0.648545 - . ID=CGI_10025174; scaffold1267 TRF Tandem_Repeat 866693 866732 53 + . . scaffold1267 GLEAN mRNA 866696 866732 0.648545 - . ID=CGI_10025174; scaffold1267 TRF Tandem_Repeat 866696 866732 65 + . . scaffold1267 GLEAN mRNA 867818 868102 0.648545 - . ID=CGI_10025174; scaffold1267 TRF Tandem_Repeat 867818 868102 347 + . . scaffold1267 GLEAN mRNA 869209 869424 0.648545 - . ID=CGI_10025174; scaffold1267 TRF Tandem_Repeat 869209 869424 312 + . . scaffold1267 GLEAN mRNA 873129 873485 0.648545 - . ID=CGI_10025174; scaffold1267 WUBlastX DNA_TcMar-Tc2 873129 873485 101 - . . scaffold1267 GLEAN mRNA 925195 925246 0.999674 - . ID=CGI_10025176; scaffold1267 TRF Tandem_Repeat 925195 925246 104 + . . scaffold1267 GLEAN mRNA 932009 932036 0.999674 - . ID=CGI_10025176; scaffold1267 TRF Tandem_Repeat 932009 932036 56 + . . scaffold1267 GLEAN mRNA 980206 980271 0.52004 + . ID=CGI_10025178; scaffold1267 TRF Tandem_Repeat 980206 980271 132 + . . scaffold1267 GLEAN mRNA 1029916 1029977 0.999673 - . ID=CGI_10025180; scaffold1267 TRF Tandem_Repeat 1029916 1029977 90 + . . scaffold1267 GLEAN mRNA 1045611 1046996 0.995555 + . ID=CGI_10025181; scaffold1267 TRF Tandem_Repeat 1045611 1046996 1736 + . . scaffold1267 GLEAN mRNA 1047275 1047311 0.995555 + . ID=CGI_10025181; scaffold1267 TRF Tandem_Repeat 1047275 1047311 65 + . . scaffold1267 GLEAN mRNA 1045200 1045442 0.995555 + . ID=CGI_10025181; scaffold1267 WUBlastX LINE_RTE-X 1045200 1045442 124 + . . scaffold1267 GLEAN mRNA 1044356 1044853 0.995555 + . ID=CGI_10025181; scaffold1267 WUBlastX LINE_RTE-X 1044356 1044853 183 + . . scaffold1267 GLEAN mRNA 1045200 1045529 0.995555 + . ID=CGI_10025181; scaffold1267 WUBlastX LINE_RTE-X 1045200 1045529 71 + . . scaffold1267 GLEAN mRNA 1044637 1045167 0.995555 + . ID=CGI_10025181; scaffold1267 WUBlastX LINE_RTE-X 1044637 1045167 102 + . . scaffold885 GLEAN mRNA 3214 3255 1 - . ID=CGI_10025183; scaffold885 TRF Tandem_Repeat 3214 3255 84 + . . scaffold885 GLEAN mRNA 5517 5602 1 - . ID=CGI_10025183; scaffold885 TRF Tandem_Repeat 5517 5602 86 + . . scaffold885 GLEAN mRNA 8487 8520 1 - . ID=CGI_10025183; scaffold885 TRF Tandem_Repeat 8487 8520 52 + . . scaffold885 GLEAN mRNA 12883 13128 0.352613 - . ID=CGI_10025184; scaffold885 WUBlastX DNA_Kolobok 12883 13128 105 + . . scaffold885 GLEAN mRNA 12557 12691 0.352613 - . ID=CGI_10025184; scaffold885 WUBlastX DNA_Kolobok 12557 12691 23 + . . scaffold885 GLEAN mRNA 12602 12733 0.352613 - . ID=CGI_10025184; scaffold885 WUBlastX DNA_Kolobok 12602 12733 24 + . . scaffold885 GLEAN mRNA 13765 14010 0.352613 - . ID=CGI_10025184; scaffold885 WUBlastX DNA_Kolobok 13765 14010 136 - . . scaffold885 GLEAN mRNA 14164 14334 0.352613 - . ID=CGI_10025184; scaffold885 WUBlastX DNA_Kolobok 14164 14334 58 - . . scaffold885 GLEAN mRNA 12934 13128 1 + . ID=CGI_10025186; scaffold885 WUBlastX DNA_Kolobok 12883 13128 105 + . . scaffold885 GLEAN mRNA 37557 37780 0.500539 - . ID=CGI_10025187; scaffold885 TRF Tandem_Repeat 37557 37780 412 + . . scaffold885 GLEAN mRNA 99817 99848 1 + . ID=CGI_10025191; scaffold885 TRF Tandem_Repeat 99817 99848 64 + . . scaffold885 GLEAN mRNA 310227 310267 1 - . ID=CGI_10025198; scaffold885 TRF Tandem_Repeat 310227 310267 82 + . . scaffold885 GLEAN mRNA 310694 310742 1 - . ID=CGI_10025198; scaffold885 TRF Tandem_Repeat 310694 310742 98 + . . scaffold885 GLEAN mRNA 402352 402402 1 - . ID=CGI_10025202; scaffold885 TRF Tandem_Repeat 402352 402402 102 + . . scaffold885 GLEAN mRNA 417400 417451 0.999997 + . ID=CGI_10025204; scaffold885 TRF Tandem_Repeat 417400 417451 104 + . . scaffold885 GLEAN mRNA 461829 461892 0.538648 - . ID=CGI_10025206; scaffold885 TRF Tandem_Repeat 461829 461892 128 + . . scaffold885 GLEAN mRNA 463068 463128 0.538648 - . ID=CGI_10025206; scaffold885 TRF Tandem_Repeat 463068 463128 99 + . . scaffold885 GLEAN mRNA 463068 463128 0.660889 + . ID=CGI_10025207; scaffold885 TRF Tandem_Repeat 463068 463128 99 + . . scaffold885 GLEAN mRNA 470799 470862 0.660889 + . ID=CGI_10025207; scaffold885 TRF Tandem_Repeat 470799 470862 121 + . . scaffold885 GLEAN mRNA 477224 477274 0.69287 - . ID=CGI_10025208; scaffold885 TRF Tandem_Repeat 477224 477274 77 + . . scaffold885 GLEAN mRNA 487625 487695 0.69287 - . ID=CGI_10025208; scaffold885 TRF Tandem_Repeat 487625 487695 63 + . . scaffold885 GLEAN mRNA 505655 505691 1 + . ID=CGI_10025210; scaffold885 TRF Tandem_Repeat 505655 505691 74 + . . scaffold885 GLEAN mRNA 503297 503725 1 + . ID=CGI_10025210; scaffold885 WUBlastX LINE_RTE-BovB 503297 503725 39 + . . scaffold885 GLEAN mRNA 503573 503725 1 + . ID=CGI_10025210; scaffold885 WUBlastX LINE_RTE-BovB 503573 503725 73 + . . scaffold885 GLEAN mRNA 505041 505181 1 + . ID=CGI_10025210; scaffold885 WUBlastX LINE_RTE-BovB 505041 505181 68 + . . scaffold885 GLEAN mRNA 504954 505181 1 + . ID=CGI_10025210; scaffold885 WUBlastX LINE_RTE-BovB 504954 505181 66 + . . scaffold885 GLEAN mRNA 518670 518715 0.784086 + . ID=CGI_10025211; scaffold885 TRF Tandem_Repeat 518670 518715 83 + . . scaffold885 GLEAN mRNA 518920 519841 0.784086 + . ID=CGI_10025211; scaffold885 TRF Tandem_Repeat 518920 519841 1347 + . . scaffold885 GLEAN mRNA 527549 527601 0.883147 - . ID=CGI_10025212; scaffold885 TRF Tandem_Repeat 527549 527601 106 + . . scaffold885 GLEAN mRNA 529111 529148 0.883147 - . ID=CGI_10025212; scaffold885 TRF Tandem_Repeat 529111 529148 76 + . . scaffold885 GLEAN mRNA 763486 763764 0.889602 + . ID=CGI_10025221; scaffold885 TRF Tandem_Repeat 763486 763764 404 + . . scaffold885 GLEAN mRNA 782115 782149 0.592256 - . ID=CGI_10025222; scaffold885 TRF Tandem_Repeat 782115 782149 70 + . . scaffold885 GLEAN mRNA 976490 976646 0.969214 + . ID=CGI_10025232; scaffold885 TRF Tandem_Repeat 976490 976646 314 + . . scaffold885 GLEAN mRNA 977322 977657 0.969214 + . ID=CGI_10025232; scaffold885 TRF Tandem_Repeat 977322 977657 347 + . . scaffold885 GLEAN mRNA 980142 980200 0.969214 + . ID=CGI_10025232; scaffold885 TRF Tandem_Repeat 980142 980200 118 + . . scaffold885 GLEAN mRNA 980868 981035 0.969214 + . ID=CGI_10025232; scaffold885 WUBlastX LTR_Ngaro 980868 981035 78 - . . scaffold885 GLEAN mRNA 991090 991120 0.998419 + . ID=CGI_10025233; scaffold885 TRF Tandem_Repeat 991090 991120 62 + . . scaffold885 GLEAN mRNA 993609 993755 0.998419 + . ID=CGI_10025233; scaffold885 WUBlastX DNA_Zator 993609 993755 69 - . . scaffold885 GLEAN mRNA 1010670 1011041 0.991835 - . ID=CGI_10025234; scaffold885 WUBlastX LINE_L1-Tx1 1010670 1011041 41 + . . scaffold885 GLEAN mRNA 1010516 1010851 0.991835 - . ID=CGI_10025234; scaffold885 WUBlastX LINE_L1-Tx1 1010516 1010851 198 + . . scaffold885 GLEAN mRNA 1011058 1011726 0.991835 - . ID=CGI_10025234; scaffold885 WUBlastX LINE_L1 1011058 1011726 258 + . . scaffold885 GLEAN mRNA 1011064 1011912 0.991835 - . ID=CGI_10025234; scaffold885 WUBlastX LINE_L1 1011064 1011912 154 + . . scaffold885 GLEAN mRNA 1025348 1026058 0.991835 - . ID=CGI_10025234; scaffold885 TRF Tandem_Repeat 1025348 1026058 1005 + . . scaffold885 GLEAN mRNA 1017665 1018054 0.991835 - . ID=CGI_10025234; scaffold885 WUBlastX LTR_DIRS 1017665 1018054 44 + . . scaffold885 GLEAN mRNA 1017265 1017687 0.991835 - . ID=CGI_10025234; scaffold885 WUBlastX LTR_DIRS 1017265 1017687 44 + . . scaffold885 GLEAN mRNA 1017481 1017660 0.991835 - . ID=CGI_10025234; scaffold885 WUBlastX LTR_DIRS 1017481 1017660 62 + . . scaffold885 GLEAN mRNA 1017484 1017717 0.991835 - . ID=CGI_10025234; scaffold885 WUBlastX LTR_DIRS 1017484 1017717 51 + . . scaffold885 GLEAN mRNA 1017448 1017633 0.991835 - . ID=CGI_10025234; scaffold885 WUBlastX LTR_DIRS 1017448 1017633 55 + . . scaffold885 GLEAN mRNA 1018461 1018628 0.991835 - . ID=CGI_10025234; scaffold885 WUBlastX LTR_DIRS 1018461 1018628 83 + . . scaffold885 GLEAN mRNA 1017665 1018270 0.991835 - . ID=CGI_10025234; scaffold885 WUBlastX LTR_DIRS 1017665 1018270 40 + . . scaffold885 GLEAN mRNA 1018461 1018748 0.991835 - . ID=CGI_10025234; scaffold885 WUBlastX LTR_DIRS 1018461 1018748 54 + . . scaffold885 GLEAN mRNA 1034440 1034481 0.991835 - . ID=CGI_10025234; scaffold885 TRF Tandem_Repeat 1034440 1034481 84 + . . scaffold82 GLEAN mRNA 12374 12587 0.999089 - . ID=CGI_10025237; scaffold82 TRF Tandem_Repeat 12374 12587 320 + . . scaffold82 GLEAN mRNA 13842 13998 0.999089 - . ID=CGI_10025237; scaffold82 TRF Tandem_Repeat 13842 13998 233 + . . scaffold82 GLEAN mRNA 33807 34123 0.985053 - . ID=CGI_10025238; scaffold82 TRF Tandem_Repeat 33807 34123 430 + . . scaffold82 GLEAN mRNA 119526 119586 0.447097 + . ID=CGI_10025240; scaffold82 TRF Tandem_Repeat 119526 119586 122 + . . scaffold82 GLEAN mRNA 121733 121774 0.447097 + . ID=CGI_10025240; scaffold82 TRF Tandem_Repeat 121733 121774 84 + . . scaffold82 GLEAN mRNA 128637 129112 0.447097 + . ID=CGI_10025240; scaffold82 TRF Tandem_Repeat 128637 129112 243 + . . scaffold82 GLEAN mRNA 128652 129172 0.447097 + . ID=CGI_10025240; scaffold82 TRF Tandem_Repeat 128652 129172 726 + . . scaffold82 GLEAN mRNA 183327 183379 1 + . ID=CGI_10025244; scaffold82 TRF Tandem_Repeat 183327 183379 106 + . . scaffold82 GLEAN mRNA 185131 185829 1 + . ID=CGI_10025244; scaffold82 WUBlastX LINE_I-Nimb 185131 185829 80 - . . scaffold82 GLEAN mRNA 184246 184665 1 + . ID=CGI_10025244; scaffold82 WUBlastX LINE_RTE-X 184246 184665 101 - . . scaffold82 GLEAN mRNA 185134 185610 1 + . ID=CGI_10025244; scaffold82 WUBlastX LINE_RTE-X 185134 185610 232 - . . scaffold82 GLEAN mRNA 184363 184626 1 + . ID=CGI_10025244; scaffold82 WUBlastX LINE_RTE-X 184363 184626 122 - . . scaffold82 GLEAN mRNA 185134 185523 1 + . ID=CGI_10025244; scaffold82 WUBlastX LINE_RTE-X 185134 185523 271 - . . scaffold82 GLEAN mRNA 207273 207302 0.761819 - . ID=CGI_10025247; scaffold82 TRF Tandem_Repeat 207273 207302 53 + . . scaffold82 GLEAN mRNA 220284 220347 0.649891 + . ID=CGI_10025248; scaffold82 TRF Tandem_Repeat 220284 220347 121 + . . scaffold82 GLEAN mRNA 214904 215809 0.649891 + . ID=CGI_10025248; scaffold82 WUBlastX LINE_L2 214904 215809 559 - . . scaffold82 GLEAN mRNA 213923 215800 0.649891 + . ID=CGI_10025248; scaffold82 WUBlastX LINE_CR1-L2 213923 215800 370 - . . scaffold82 GLEAN mRNA 272283 272417 0.994575 + . ID=CGI_10025252; scaffold82 TRF Tandem_Repeat 272283 272417 135 + . . scaffold82 GLEAN mRNA 272291 272417 0.994575 + . ID=CGI_10025252; scaffold82 TRF Tandem_Repeat 272291 272417 154 + . . scaffold82 GLEAN mRNA 272495 273016 0.994575 + . ID=CGI_10025252; scaffold82 WUBlastX DNA_Sola 272495 273016 124 + . . scaffold82 GLEAN mRNA 393702 393760 0.992007 - . ID=CGI_10025261; scaffold82 TRF Tandem_Repeat 393702 393760 50 + . . scaffold82 GLEAN mRNA 545322 545687 0.558406 + . ID=CGI_10025264; scaffold82 TRF Tandem_Repeat 545322 545687 268 + . . scaffold82 GLEAN mRNA 556448 557005 1 - . ID=CGI_10025265; scaffold82 WUBlastX LINE_RTE-X 556448 557005 116 - . . scaffold82 GLEAN mRNA 556574 557023 1 - . ID=CGI_10025265; scaffold82 WUBlastX LINE_RTE-X 556574 557023 133 - . . scaffold82 GLEAN mRNA 685173 685199 0.999877 - . ID=CGI_10025267; scaffold82 TRF Tandem_Repeat 685173 685199 54 + . . scaffold82 GLEAN mRNA 687420 687830 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 687420 687830 79 - . . scaffold82 GLEAN mRNA 687055 687429 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1 687055 687429 105 - . . scaffold82 GLEAN mRNA 686689 687372 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 686689 687372 148 - . . scaffold82 GLEAN mRNA 687516 687845 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 687516 687845 169 - . . scaffold82 GLEAN mRNA 688852 688929 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_RTE-BovB 688852 688929 20 - . . scaffold82 GLEAN mRNA 688533 688580 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 688533 688580 38 - . . scaffold82 GLEAN mRNA 688533 688589 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1 688533 688589 36 - . . scaffold82 GLEAN mRNA 688407 688580 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1 688407 688580 23 - . . scaffold82 GLEAN mRNA 688612 688911 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 688612 688911 89 - . . scaffold82 GLEAN mRNA 688929 689171 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 688929 689171 152 - . . scaffold82 GLEAN mRNA 688941 689228 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1 688941 689228 55 - . . scaffold82 GLEAN mRNA 687827 688393 0.999877 - . ID=CGI_10025267; scaffold82 WUBlastX LINE_L1-Tx1 687827 688393 197 - . . scaffold82 GLEAN mRNA 745263 745296 0.569957 - . ID=CGI_10025268; scaffold82 TRF Tandem_Repeat 745263 745296 59 + . . scaffold82 GLEAN mRNA 750693 750724 0.569957 - . ID=CGI_10025268; scaffold82 TRF Tandem_Repeat 750693 750724 55 + . . scaffold82 GLEAN mRNA 753815 753946 0.569957 - . ID=CGI_10025268; scaffold82 WUBlastX DNA_Kolobok 753815 753946 58 + . . scaffold82 GLEAN mRNA 754358 754498 0.569957 - . ID=CGI_10025268; scaffold82 WUBlastX DNA_Kolobok 754358 754498 36 - . . scaffold82 GLEAN mRNA 766215 766249 0.819798 - . ID=CGI_10025269; scaffold82 TRF Tandem_Repeat 766215 766249 70 + . . scaffold82 GLEAN mRNA 766557 766588 0.819798 - . ID=CGI_10025269; scaffold82 TRF Tandem_Repeat 766557 766588 55 + . . scaffold82 GLEAN mRNA 766730 766769 0.819798 - . ID=CGI_10025269; scaffold82 TRF Tandem_Repeat 766730 766769 71 + . . scaffold82 GLEAN mRNA 766860 766902 0.819798 - . ID=CGI_10025269; scaffold82 TRF Tandem_Repeat 766860 766902 86 + . . scaffold82 GLEAN mRNA 791205 791316 0.632952 - . ID=CGI_10025270; scaffold82 TRF Tandem_Repeat 791205 791316 92 + . . scaffold82 GLEAN mRNA 791428 791523 0.632952 - . ID=CGI_10025270; scaffold82 TRF Tandem_Repeat 791428 791523 97 + . . scaffold82 GLEAN mRNA 791346 791523 0.632952 - . ID=CGI_10025270; scaffold82 TRF Tandem_Repeat 791346 791523 138 + . . scaffold82 GLEAN mRNA 835981 836052 0.999719 + . ID=CGI_10025273; scaffold82 TRF Tandem_Repeat 835981 836052 135 + . . scaffold82 GLEAN mRNA 842267 842328 0.999719 + . ID=CGI_10025273; scaffold82 TRF Tandem_Repeat 842267 842328 106 + . . scaffold82 GLEAN mRNA 860314 860355 0.894222 + . ID=CGI_10025274; scaffold82 TRF Tandem_Repeat 860314 860355 84 + . . scaffold82 GLEAN mRNA 860482 860537 0.894222 + . ID=CGI_10025274; scaffold82 TRF Tandem_Repeat 860482 860537 112 + . . scaffold82 GLEAN mRNA 910020 910126 0.853942 - . ID=CGI_10025278; scaffold82 TRF Tandem_Repeat 910020 910126 142 + . . scaffold82 GLEAN mRNA 911614 911759 0.853942 - . ID=CGI_10025278; scaffold82 TRF Tandem_Repeat 911614 911759 112 + . . scaffold82 GLEAN mRNA 911635 911759 0.853942 - . ID=CGI_10025278; scaffold82 TRF Tandem_Repeat 911635 911759 133 + . . scaffold82 GLEAN mRNA 950522 951847 0.999614 + . ID=CGI_10025279; scaffold82 TRF Tandem_Repeat 950522 951847 1740 + . . scaffold82 GLEAN mRNA 950522 951847 0.999614 + . ID=CGI_10025279; scaffold82 TRF Tandem_Repeat 950522 951847 1740 + . . scaffold82 GLEAN mRNA 950522 951516 0.999614 + . ID=CGI_10025279; scaffold82 TRF Tandem_Repeat 950522 951516 1659 + . . scaffold82 GLEAN mRNA 951555 951678 0.999614 + . ID=CGI_10025279; scaffold82 TRF Tandem_Repeat 951555 951678 131 + . . scaffold82 GLEAN mRNA 951684 951861 0.999614 + . ID=CGI_10025279; scaffold82 TRF Tandem_Repeat 951684 951861 137 + . . scaffold82 GLEAN mRNA 968917 968956 0.790112 - . ID=CGI_10025280; scaffold82 TRF Tandem_Repeat 968917 968956 62 + . . scaffold82 GLEAN mRNA 975971 976198 0.790112 - . ID=CGI_10025280; scaffold82 TRF Tandem_Repeat 975971 976198 320 + . . scaffold82 GLEAN mRNA 978536 978585 0.790112 - . ID=CGI_10025280; scaffold82 TRF Tandem_Repeat 978536 978585 75 + . . scaffold82 GLEAN mRNA 980353 980629 0.790112 - . ID=CGI_10025280; scaffold82 TRF Tandem_Repeat 980353 980629 491 + . . scaffold82 GLEAN mRNA 988055 988589 0.790112 - . ID=CGI_10025280; scaffold82 TRF Tandem_Repeat 988055 988589 528 + . . scaffold82 GLEAN mRNA 990940 991632 0.790112 - . ID=CGI_10025280; scaffold82 TRF Tandem_Repeat 990940 991632 1223 + . . scaffold82 GLEAN mRNA 1017496 1017586 0.93066 + . ID=CGI_10025281; scaffold82 TRF Tandem_Repeat 1017496 1017586 59 + . . scaffold82 GLEAN mRNA 1033254 1033288 0.93066 + . ID=CGI_10025281; scaffold82 TRF Tandem_Repeat 1033254 1033288 63 + . . scaffold149 GLEAN mRNA 8185 8215 1 + . ID=CGI_10025282; scaffold149 TRF Tandem_Repeat 8185 8215 62 + . . scaffold149 GLEAN mRNA 31293 31341 0.536029 - . ID=CGI_10025283; scaffold149 TRF Tandem_Repeat 31293 31341 71 + . . scaffold149 GLEAN mRNA 46763 46802 0.425691 - . ID=CGI_10025285; scaffold149 TRF Tandem_Repeat 46763 46802 80 + . . scaffold149 GLEAN mRNA 90086 90137 0.964877 + . ID=CGI_10025289; scaffold149 TRF Tandem_Repeat 90086 90137 104 + . . scaffold149 GLEAN mRNA 85595 85804 0.964877 + . ID=CGI_10025289; scaffold149 WUBlastX LINE_L2 85595 85804 41 - . . scaffold149 GLEAN mRNA 100259 100294 0.964877 + . ID=CGI_10025289; scaffold149 TRF Tandem_Repeat 100259 100294 54 + . . scaffold149 GLEAN mRNA 113132 113196 0.899792 + . ID=CGI_10025290; scaffold149 TRF Tandem_Repeat 113132 113196 130 + . . scaffold149 GLEAN mRNA 113548 113617 0.899792 + . ID=CGI_10025290; scaffold149 TRF Tandem_Repeat 113548 113617 95 + . . scaffold149 GLEAN mRNA 113548 113617 0.899792 + . ID=CGI_10025290; scaffold149 TRF Tandem_Repeat 113548 113617 95 + . . scaffold149 GLEAN mRNA 112798 113088 0.899792 + . ID=CGI_10025290; scaffold149 WUBlastX LTR_Gypsy 112798 113088 25 + . . scaffold149 GLEAN mRNA 128228 128471 0.537204 - . ID=CGI_10025291; scaffold149 TRF Tandem_Repeat 128228 128471 364 + . . scaffold149 GLEAN mRNA 131982 132021 0.537204 - . ID=CGI_10025291; scaffold149 TRF Tandem_Repeat 131982 132021 80 + . . scaffold149 GLEAN mRNA 133933 133976 0.537204 - . ID=CGI_10025291; scaffold149 TRF Tandem_Repeat 133933 133976 63 + . . scaffold149 GLEAN mRNA 161506 162042 0.728287 + . ID=CGI_10025293; scaffold149 TRF Tandem_Repeat 161506 162042 300 + . . scaffold149 GLEAN mRNA 161506 162042 0.728287 + . ID=CGI_10025293; scaffold149 TRF Tandem_Repeat 161506 162042 435 + . . scaffold149 GLEAN mRNA 176516 177865 0.998924 + . ID=CGI_10025294; scaffold149 WUBlastX DNA_hAT 176516 177865 286 + . . scaffold149 GLEAN mRNA 185949 186090 0.990232 - . ID=CGI_10025295; scaffold149 TRF Tandem_Repeat 185949 186090 230 + . . scaffold149 GLEAN mRNA 191758 191988 0.990232 - . ID=CGI_10025295; scaffold149 WUBlastX LINE_L1 191758 191988 21 + . . scaffold149 GLEAN mRNA 192117 192629 0.990232 - . ID=CGI_10025295; scaffold149 WUBlastX LINE_L1-Tx1 192117 192629 114 + . . scaffold149 GLEAN mRNA 191490 191666 0.990232 - . ID=CGI_10025295; scaffold149 WUBlastX LINE_L1-Tx1 191490 191666 34 + . . scaffold149 GLEAN mRNA 192057 192422 0.990232 - . ID=CGI_10025295; scaffold149 WUBlastX LINE_L1-Tx1 192057 192422 42 + . . scaffold149 GLEAN mRNA 233780 233881 0.960172 - . ID=CGI_10025296; scaffold149 WUBlastX LINE_L2 233780 234265 66 - . . scaffold149 GLEAN mRNA 233753 233881 0.960172 - . ID=CGI_10025296; scaffold149 WUBlastX LINE_RTE-BovB 233753 234058 80 - . . scaffold149 GLEAN mRNA 233753 233881 0.960172 - . ID=CGI_10025296; scaffold149 WUBlastX LINE_L2 233753 234508 43 - . . scaffold149 GLEAN mRNA 298526 298568 0.935125 + . ID=CGI_10025297; scaffold149 TRF Tandem_Repeat 298526 298568 86 + . . scaffold149 GLEAN mRNA 298588 298653 0.935125 + . ID=CGI_10025297; scaffold149 TRF Tandem_Repeat 298588 298653 132 + . . scaffold149 GLEAN mRNA 298526 298568 1 - . ID=CGI_10025298; scaffold149 TRF Tandem_Repeat 298526 298568 86 + . . scaffold149 GLEAN mRNA 298588 298653 1 - . ID=CGI_10025298; scaffold149 TRF Tandem_Repeat 298588 298653 132 + . . scaffold149 GLEAN mRNA 346251 346277 0.217101 + . ID=CGI_10025300; scaffold149 TRF Tandem_Repeat 346251 346277 54 + . . scaffold149 GLEAN mRNA 352090 352131 0.217101 + . ID=CGI_10025300; scaffold149 TRF Tandem_Repeat 352090 352131 57 + . . scaffold149 GLEAN mRNA 347825 348085 0.217101 + . ID=CGI_10025300; scaffold149 WUBlastX LINE_L1-Tx1 347825 348085 57 - . . scaffold149 GLEAN mRNA 348067 348189 0.217101 + . ID=CGI_10025300; scaffold149 WUBlastX LINE_L1-Tx1 348067 348189 56 - . . scaffold149 GLEAN mRNA 347409 347561 0.217101 + . ID=CGI_10025300; scaffold149 WUBlastX LINE_L1-Tx1 347409 347561 24 - . . scaffold149 GLEAN mRNA 311285 311330 0.217101 + . ID=CGI_10025300; scaffold149 TRF Tandem_Repeat 311285 311330 83 + . . scaffold149 GLEAN mRNA 420728 420796 1 - . ID=CGI_10025302; scaffold149 TRF Tandem_Repeat 420728 420796 138 + . . scaffold149 GLEAN mRNA 488401 488425 0.67799 - . ID=CGI_10025303; scaffold149 TRF Tandem_Repeat 488401 488425 50 + . . scaffold149 GLEAN mRNA 497551 498174 0.997893 - . ID=CGI_10025304; scaffold149 TRF Tandem_Repeat 497551 498174 489 + . . scaffold149 GLEAN mRNA 497551 498174 0.997893 - . ID=CGI_10025304; scaffold149 TRF Tandem_Repeat 497551 498174 561 + . . scaffold149 GLEAN mRNA 497993 498185 0.997893 - . ID=CGI_10025304; scaffold149 TRF Tandem_Repeat 497993 498185 255 + . . scaffold149 GLEAN mRNA 497551 498174 0.997893 - . ID=CGI_10025304; scaffold149 TRF Tandem_Repeat 497551 498174 519 + . . scaffold149 GLEAN mRNA 502215 502271 0.997893 - . ID=CGI_10025304; scaffold149 TRF Tandem_Repeat 502215 502271 105 + . . scaffold149 GLEAN mRNA 555664 555731 0.999351 - . ID=CGI_10025307; scaffold149 TRF Tandem_Repeat 555664 555731 109 + . . scaffold149 GLEAN mRNA 556101 556223 0.999351 - . ID=CGI_10025307; scaffold149 TRF Tandem_Repeat 556101 556223 173 + . . scaffold149 GLEAN mRNA 587342 587393 0.922469 + . ID=CGI_10025308; scaffold149 TRF Tandem_Repeat 587342 587393 104 + . . scaffold149 GLEAN mRNA 588106 588155 0.922469 + . ID=CGI_10025308; scaffold149 TRF Tandem_Repeat 588106 588155 100 + . . scaffold149 GLEAN mRNA 589564 589653 0.922469 + . ID=CGI_10025308; scaffold149 WUBlastX LTR_Ngaro 589564 589653 30 - . . scaffold149 GLEAN mRNA 589647 589880 0.922469 + . ID=CGI_10025308; scaffold149 WUBlastX LTR_Ngaro 589647 589880 27 - . . scaffold149 GLEAN mRNA 601123 601157 1 - . ID=CGI_10025311; scaffold149 TRF Tandem_Repeat 601123 601157 70 + . . scaffold149 GLEAN mRNA 622657 623472 0.999675 - . ID=CGI_10025312; scaffold149 WUBlastX LINE_L1-Tx1 622657 623472 54 + . . scaffold149 GLEAN mRNA 633715 633858 0.618058 + . ID=CGI_10025313; scaffold149 WUBlastX DNA_Harbinger 633715 633858 58 + . . scaffold149 GLEAN mRNA 633718 633897 0.618058 + . ID=CGI_10025313; scaffold149 WUBlastX DNA_Harbinger 633718 633897 47 + . . scaffold149 GLEAN mRNA 636747 636787 0.999652 + . ID=CGI_10025314; scaffold149 TRF Tandem_Repeat 636747 636787 82 + . . scaffold149 GLEAN mRNA 697031 697265 0.640828 + . ID=CGI_10025315; scaffold149 TRF Tandem_Repeat 697031 697265 327 + . . scaffold149 GLEAN mRNA 700091 700303 0.640828 + . ID=CGI_10025315; scaffold149 TRF Tandem_Repeat 700091 700303 264 + . . scaffold149 GLEAN mRNA 709350 709397 0.936556 - . ID=CGI_10025316; scaffold149 TRF Tandem_Repeat 709350 709397 96 + . . scaffold149 GLEAN mRNA 709920 710253 0.936556 - . ID=CGI_10025316; scaffold149 TRF Tandem_Repeat 709920 710253 487 + . . scaffold149 GLEAN mRNA 711059 711336 0.936556 - . ID=CGI_10025316; scaffold149 TRF Tandem_Repeat 711059 711336 303 + . . scaffold149 GLEAN mRNA 713104 713266 0.936556 - . ID=CGI_10025316; scaffold149 TRF Tandem_Repeat 713104 713266 132 + . . scaffold149 GLEAN mRNA 741807 741880 1 - . ID=CGI_10025317; scaffold149 TRF Tandem_Repeat 741807 741880 148 + . . scaffold149 GLEAN mRNA 747392 747536 0.525247 + . ID=CGI_10025319; scaffold149 TRF Tandem_Repeat 747392 747536 209 + . . scaffold149 GLEAN mRNA 778133 778946 0.999983 - . ID=CGI_10025321; scaffold149 TRF Tandem_Repeat 778133 778946 862 + . . scaffold149 GLEAN mRNA 779128 779389 0.999983 - . ID=CGI_10025321; scaffold149 TRF Tandem_Repeat 779128 779389 463 + . . scaffold149 GLEAN mRNA 800244 800670 0.959834 - . ID=CGI_10025322; scaffold149 TRF Tandem_Repeat 800244 800670 402 + . . scaffold149 GLEAN mRNA 800305 800635 0.959834 - . ID=CGI_10025322; scaffold149 TRF Tandem_Repeat 800305 800635 446 + . . scaffold149 GLEAN mRNA 805539 805605 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 805539 805605 62 + . . scaffold149 GLEAN mRNA 806245 807739 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 806245 807739 1393 + . . scaffold149 GLEAN mRNA 807664 807733 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 807664 807733 55 + . . scaffold149 GLEAN mRNA 809734 809838 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 809734 809838 76 + . . scaffold149 GLEAN mRNA 818429 818689 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 818429 818689 384 + . . scaffold149 GLEAN mRNA 823847 824548 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 823847 824548 567 + . . scaffold149 GLEAN mRNA 823884 824540 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 823884 824540 828 + . . scaffold149 GLEAN mRNA 823884 824547 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 823884 824547 851 + . . scaffold149 GLEAN mRNA 825189 825761 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 825189 825761 722 + . . scaffold149 GLEAN mRNA 827131 828060 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 827131 828060 1518 + . . scaffold149 GLEAN mRNA 827131 828975 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 827131 828975 2358 + . . scaffold149 GLEAN mRNA 827131 828975 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 827131 828975 2358 + . . scaffold149 GLEAN mRNA 827896 828922 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 827896 828922 1080 + . . scaffold149 GLEAN mRNA 828130 828975 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 828130 828975 639 + . . scaffold149 GLEAN mRNA 830496 830996 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 830496 830996 851 + . . scaffold149 GLEAN mRNA 830496 830996 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 830496 830996 860 + . . scaffold149 GLEAN mRNA 831463 831892 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 831463 831892 675 + . . scaffold149 GLEAN mRNA 835798 836459 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 835798 836459 994 + . . scaffold149 GLEAN mRNA 801780 804374 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 801780 804374 3468 + . . scaffold149 GLEAN mRNA 818429 818689 1 + . ID=CGI_10025324; scaffold149 TRF Tandem_Repeat 818429 818689 384 + . . scaffold149 GLEAN mRNA 845719 845754 0.923707 - . ID=CGI_10025325; scaffold149 TRF Tandem_Repeat 845719 845754 56 + . . scaffold149 GLEAN mRNA 846637 847018 0.923707 - . ID=CGI_10025325; scaffold149 TRF Tandem_Repeat 846637 847018 204 + . . scaffold149 GLEAN mRNA 849202 849507 0.923707 - . ID=CGI_10025325; scaffold149 TRF Tandem_Repeat 849202 849507 477 + . . scaffold149 GLEAN mRNA 851255 851312 0.923707 - . ID=CGI_10025325; scaffold149 TRF Tandem_Repeat 851255 851312 109 + . . scaffold149 GLEAN mRNA 851341 851419 0.923707 - . ID=CGI_10025325; scaffold149 TRF Tandem_Repeat 851341 851419 115 + . . scaffold149 GLEAN mRNA 855497 855555 0.923707 - . ID=CGI_10025325; scaffold149 TRF Tandem_Repeat 855497 855555 118 + . . scaffold149 GLEAN mRNA 862547 862583 0.660124 - . ID=CGI_10025328; scaffold149 TRF Tandem_Repeat 862547 862583 74 + . . scaffold149 GLEAN mRNA 866766 867079 0.660124 - . ID=CGI_10025328; scaffold149 TRF Tandem_Repeat 866766 867079 83 + . . scaffold149 GLEAN mRNA 866750 867089 0.660124 - . ID=CGI_10025328; scaffold149 TRF Tandem_Repeat 866750 867089 181 + . . scaffold149 GLEAN mRNA 866750 867088 0.660124 - . ID=CGI_10025328; scaffold149 TRF Tandem_Repeat 866750 867088 180 + . . scaffold149 GLEAN mRNA 866921 867092 0.660124 - . ID=CGI_10025328; scaffold149 TRF Tandem_Repeat 866921 867092 139 + . . scaffold149 GLEAN mRNA 881751 882153 0.672148 - . ID=CGI_10025329; scaffold149 TRF Tandem_Repeat 881751 882153 465 + . . scaffold149 GLEAN mRNA 882387 882808 0.672148 - . ID=CGI_10025329; scaffold149 TRF Tandem_Repeat 882387 882808 519 + . . scaffold149 GLEAN mRNA 882987 883600 0.672148 - . ID=CGI_10025329; scaffold149 TRF Tandem_Repeat 882987 883600 1012 + . . scaffold149 GLEAN mRNA 899225 899357 0.724901 + . ID=CGI_10025330; scaffold149 TRF Tandem_Repeat 899225 899357 184 + . . scaffold149 GLEAN mRNA 901877 902070 0.724901 + . ID=CGI_10025330; scaffold149 TRF Tandem_Repeat 901877 902070 280 + . . scaffold149 GLEAN mRNA 902177 902204 0.724901 + . ID=CGI_10025330; scaffold149 TRF Tandem_Repeat 902177 902204 56 + . . scaffold149 GLEAN mRNA 912432 912466 1 - . ID=CGI_10025331; scaffold149 TRF Tandem_Repeat 912432 912466 70 + . . scaffold149 GLEAN mRNA 914135 914313 1 - . ID=CGI_10025331; scaffold149 TRF Tandem_Repeat 914135 914313 313 + . . scaffold149 GLEAN mRNA 915105 915236 1 - . ID=CGI_10025331; scaffold149 TRF Tandem_Repeat 915105 915236 192 + . . scaffold149 GLEAN mRNA 915135 915235 1 - . ID=CGI_10025331; scaffold149 TRF Tandem_Repeat 915135 915235 121 + . . scaffold149 GLEAN mRNA 919330 919449 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 919330 919449 91 + . . scaffold149 GLEAN mRNA 919343 919495 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 919343 919495 152 + . . scaffold149 GLEAN mRNA 919697 920121 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 919697 920121 294 + . . scaffold149 GLEAN mRNA 919827 920049 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 919827 920049 58 + . . scaffold149 GLEAN mRNA 919824 920177 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 919824 920177 195 + . . scaffold149 GLEAN mRNA 924526 924575 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 924526 924575 84 + . . scaffold149 GLEAN mRNA 926003 927316 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 926003 927316 1577 + . . scaffold149 GLEAN mRNA 928303 928338 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 928303 928338 72 + . . scaffold149 GLEAN mRNA 930055 930097 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 930055 930097 59 + . . scaffold149 GLEAN mRNA 931180 931596 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 931180 931596 200 + . . scaffold149 GLEAN mRNA 931180 931688 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 931180 931688 778 + . . scaffold149 GLEAN mRNA 931675 931817 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 931675 931817 200 + . . scaffold149 GLEAN mRNA 938135 938187 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 938135 938187 79 + . . scaffold149 GLEAN mRNA 938169 938225 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 938169 938225 96 + . . scaffold149 GLEAN mRNA 938135 938221 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 938135 938221 88 + . . scaffold149 GLEAN mRNA 938141 938227 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 938141 938227 97 + . . scaffold149 GLEAN mRNA 938513 938624 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 938513 938624 102 + . . scaffold149 GLEAN mRNA 939539 939596 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 939539 939596 116 + . . scaffold149 GLEAN mRNA 939790 939826 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 939790 939826 74 + . . scaffold149 GLEAN mRNA 940626 942045 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 940626 942045 1364 + . . scaffold149 GLEAN mRNA 958976 959122 0.932291 - . ID=CGI_10025333; scaffold149 WUBlastX LINE_L1-Tx1 958976 959122 28 - . . scaffold149 GLEAN mRNA 958887 959000 0.932291 - . ID=CGI_10025333; scaffold149 WUBlastX LINE_L1-Tx1 958887 959000 36 - . . scaffold149 GLEAN mRNA 978561 978590 0.998126 + . ID=CGI_10025334; scaffold149 TRF Tandem_Repeat 978561 978590 51 + . . scaffold149 GLEAN mRNA 977738 977905 0.998126 + . ID=CGI_10025334; scaffold149 WUBlastX LINE_Penelope 977573 977905 39 + . . scaffold149 GLEAN mRNA 977738 977809 0.998126 + . ID=CGI_10025334; scaffold149 WUBlastX LINE_Penelope 977573 977809 44 + . . scaffold149 GLEAN mRNA 998912 999298 0.999502 - . ID=CGI_10025337; scaffold149 WUBlastX DNA_Harbinger 998912 999298 158 + . . scaffold149 GLEAN mRNA 999745 1000016 0.999502 - . ID=CGI_10025337; scaffold149 TRF Tandem_Repeat 999745 1000016 203 + . . scaffold149 GLEAN mRNA 1000791 1001049 0.999502 - . ID=CGI_10025337; scaffold149 TRF Tandem_Repeat 1000791 1001049 194 + . . scaffold149 GLEAN mRNA 1001157 1001276 0.999502 - . ID=CGI_10025337; scaffold149 WUBlastX DNA_Harbinger 1001157 1001276 97 + . . scaffold149 GLEAN mRNA 1002046 1002180 0.999502 - . ID=CGI_10025337; scaffold149 WUBlastX DNA_Harbinger 1002046 1002180 60 + . . scaffold149 GLEAN mRNA 1002433 1002699 0.999502 - . ID=CGI_10025337; scaffold149 WUBlastX DNA_Harbinger 1002433 1002699 128 + . . scaffold149 GLEAN mRNA 1002246 1002368 0.999502 - . ID=CGI_10025337; scaffold149 WUBlastX DNA_Harbinger 1002246 1002368 76 + . . scaffold149 GLEAN mRNA 998912 999298 1 + . ID=CGI_10025338; scaffold149 WUBlastX DNA_Harbinger 998912 999298 158 + . . scaffold149 GLEAN mRNA 999745 1000016 1 + . ID=CGI_10025338; scaffold149 TRF Tandem_Repeat 999745 1000016 203 + . . scaffold149 GLEAN mRNA 1000791 1001049 1 + . ID=CGI_10025338; scaffold149 TRF Tandem_Repeat 1000791 1001049 194 + . . scaffold149 GLEAN mRNA 1001157 1001276 1 + . ID=CGI_10025338; scaffold149 WUBlastX DNA_Harbinger 1001157 1001276 97 + . . scaffold149 GLEAN mRNA 1035843 1035893 0.813477 - . ID=CGI_10025339; scaffold149 TRF Tandem_Repeat 1035843 1035893 57 + . . scaffold149 GLEAN mRNA 1042362 1042453 0.813477 - . ID=CGI_10025339; scaffold149 TRF Tandem_Repeat 1042362 1042453 98 + . . scaffold149 GLEAN mRNA 1042530 1042689 0.813477 - . ID=CGI_10025339; scaffold149 TRF Tandem_Repeat 1042530 1042689 196 + . . scaffold149 GLEAN mRNA 1042919 1043012 0.813477 - . ID=CGI_10025339; scaffold149 TRF Tandem_Repeat 1042919 1043012 82 + . . scaffold149 GLEAN mRNA 1037253 1037450 0.813477 - . ID=CGI_10025339; scaffold149 WUBlastX DNA_TcMar-Marin 1037253 1037450 48 - . . scaffold149 GLEAN mRNA 1037802 1038020 0.813477 - . ID=CGI_10025339; scaffold149 WUBlastX DNA_TcMar-Marin 1037802 1038020 42 - . . scaffold149 GLEAN mRNA 1037202 1037396 0.813477 - . ID=CGI_10025339; scaffold149 WUBlastX DNA_TcMar-Marin 1037202 1037396 25 - . . scaffold149 GLEAN mRNA 1049460 1049593 0.813477 - . ID=CGI_10025339; scaffold149 TRF Tandem_Repeat 1049460 1049593 83 + . . scaffold149 GLEAN mRNA 1053988 1054035 0.813477 - . ID=CGI_10025339; scaffold149 TRF Tandem_Repeat 1053988 1054035 53 + . . scaffold149 GLEAN mRNA 1053988 1054035 0.813477 - . ID=CGI_10025339; scaffold149 TRF Tandem_Repeat 1053988 1054035 53 + . . scaffold226 GLEAN mRNA 114698 114747 0.999221 - . ID=CGI_10025342; scaffold226 TRF Tandem_Repeat 114698 114747 100 + . . scaffold226 GLEAN mRNA 207029 208203 0.999949 + . ID=CGI_10025345; scaffold226 TRF Tandem_Repeat 207029 208203 1538 + . . scaffold226 GLEAN mRNA 211279 211726 0.999949 + . ID=CGI_10025345; scaffold226 TRF Tandem_Repeat 211279 211726 680 + . . scaffold226 GLEAN mRNA 251619 251816 0.999843 - . ID=CGI_10025347; scaffold226 WUBlastX LINE_RTE-X 251619 251996 43 - . . scaffold226 GLEAN mRNA 272352 272473 0.893615 + . ID=CGI_10025348; scaffold226 TRF Tandem_Repeat 272352 272473 172 + . . scaffold226 GLEAN mRNA 275550 275607 0.893615 + . ID=CGI_10025348; scaffold226 TRF Tandem_Repeat 275550 275607 116 + . . scaffold226 GLEAN mRNA 264339 264581 0.893615 + . ID=CGI_10025348; scaffold226 WUBlastX LINE_RTE-X 264339 264581 40 + . . scaffold226 GLEAN mRNA 425575 425625 0.999676 + . ID=CGI_10025356; scaffold226 TRF Tandem_Repeat 425575 425625 61 + . . scaffold226 GLEAN mRNA 425797 426474 0.999676 + . ID=CGI_10025356; scaffold226 TRF Tandem_Repeat 425797 426474 957 + . . scaffold226 GLEAN mRNA 437748 438666 0.671753 - . ID=CGI_10025357; scaffold226 TRF Tandem_Repeat 437748 438666 1277 + . . scaffold226 GLEAN mRNA 451354 451412 0.999539 + . ID=CGI_10025360; scaffold226 TRF Tandem_Repeat 451354 451412 118 + . . scaffold226 GLEAN mRNA 462263 462325 0.999286 - . ID=CGI_10025361; scaffold226 TRF Tandem_Repeat 462263 462325 126 + . . scaffold226 GLEAN mRNA 474033 474070 0.999286 - . ID=CGI_10025361; scaffold226 TRF Tandem_Repeat 474033 474070 67 + . . scaffold226 GLEAN mRNA 467463 467582 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_Ngaro 467463 467582 41 + . . scaffold226 GLEAN mRNA 463070 463951 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_DIRS 463070 463951 116 + . . scaffold226 GLEAN mRNA 464352 464684 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_DIRS 464352 464684 30 + . . scaffold226 GLEAN mRNA 462406 462945 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_DIRS 462406 462945 83 + . . scaffold226 GLEAN mRNA 468026 468316 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_Ngaro 468026 468316 145 + . . scaffold226 GLEAN mRNA 469207 469614 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_Ngaro 469207 469614 169 + . . scaffold226 GLEAN mRNA 468390 469151 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_Ngaro 468390 469151 384 + . . scaffold226 GLEAN mRNA 467309 467410 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_Ngaro 467309 467410 39 + . . scaffold226 GLEAN mRNA 463022 464128 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_DIRS 463022 464128 58 + . . scaffold226 GLEAN mRNA 468325 468417 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_Ngaro 468325 468417 43 + . . scaffold226 GLEAN mRNA 463178 463921 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_DIRS 463178 463921 118 + . . scaffold226 GLEAN mRNA 464105 464329 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_DIRS 464105 464329 34 + . . scaffold226 GLEAN mRNA 469058 469213 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_Ngaro 469058 469213 92 + . . scaffold226 GLEAN mRNA 462526 462972 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_DIRS 462526 462972 120 + . . scaffold226 GLEAN mRNA 469530 470489 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_Ngaro 469530 470489 214 + . . scaffold226 GLEAN mRNA 467584 467763 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_Ngaro 467584 467763 67 + . . scaffold226 GLEAN mRNA 468313 468357 0.999286 - . ID=CGI_10025361; scaffold226 WUBlastX LTR_Gypsy 468313 468357 25 + . . scaffold226 GLEAN mRNA 490854 490891 0.999286 - . ID=CGI_10025361; scaffold226 TRF Tandem_Repeat 490854 490891 53 + . . scaffold226 GLEAN mRNA 491332 491357 0.999286 - . ID=CGI_10025361; scaffold226 TRF Tandem_Repeat 491332 491357 52 + . . scaffold226 GLEAN mRNA 492797 492847 0.999286 - . ID=CGI_10025361; scaffold226 TRF Tandem_Repeat 492797 492847 102 + . . scaffold226 GLEAN mRNA 497582 497633 0.995797 - . ID=CGI_10025362; scaffold226 TRF Tandem_Repeat 497582 497633 86 + . . scaffold226 GLEAN mRNA 602045 602757 0.69992 - . ID=CGI_10025368; scaffold226 TRF Tandem_Repeat 602045 602757 1250 + . . scaffold226 GLEAN mRNA 654007 654316 0.559216 + . ID=CGI_10025370; scaffold226 TRF Tandem_Repeat 654007 654316 521 + . . scaffold226 GLEAN mRNA 656026 656081 0.559216 + . ID=CGI_10025370; scaffold226 TRF Tandem_Repeat 656026 656081 67 + . . scaffold226 GLEAN mRNA 659796 659972 0.559216 + . ID=CGI_10025370; scaffold226 WUBlastX LTR_Gypsy 659796 659972 42 - . . scaffold226 GLEAN mRNA 660550 660948 0.559216 + . ID=CGI_10025370; scaffold226 WUBlastX LTR_Gypsy-Cigr 660550 660948 62 - . . scaffold226 GLEAN mRNA 660663 661022 0.559216 + . ID=CGI_10025370; scaffold226 WUBlastX LTR_Gypsy-Cigr 660663 661022 49 - . . scaffold226 GLEAN mRNA 676002 676062 0.559216 + . ID=CGI_10025370; scaffold226 TRF Tandem_Repeat 676002 676062 68 + . . scaffold226 GLEAN mRNA 677040 677089 0.559216 + . ID=CGI_10025370; scaffold226 TRF Tandem_Repeat 677040 677089 75 + . . scaffold226 GLEAN mRNA 781794 782045 0.995567 + . ID=CGI_10025375; scaffold226 WUBlastX DNA_hAT 781794 782045 91 + . . scaffold226 GLEAN mRNA 780073 780750 0.995567 + . ID=CGI_10025375; scaffold226 WUBlastX DNA_hAT 780073 780750 134 + . . scaffold226 GLEAN mRNA 781564 781680 0.995567 + . ID=CGI_10025375; scaffold226 WUBlastX DNA_hAT 781564 781680 52 + . . scaffold226 GLEAN mRNA 781498 781671 0.995567 + . ID=CGI_10025375; scaffold226 WUBlastX DNA_hAT 781498 781671 49 + . . scaffold226 GLEAN mRNA 787377 787403 0.995567 + . ID=CGI_10025375; scaffold226 TRF Tandem_Repeat 787377 787403 54 + . . scaffold226 GLEAN mRNA 839563 839785 0.987005 + . ID=CGI_10025381; scaffold226 TRF Tandem_Repeat 839563 839785 401 + . . scaffold226 GLEAN mRNA 843904 843930 1 - . ID=CGI_10025382; scaffold226 TRF Tandem_Repeat 843904 843930 54 + . . scaffold226 GLEAN mRNA 859814 859859 0.530305 - . ID=CGI_10025383; scaffold226 TRF Tandem_Repeat 859814 859859 92 + . . scaffold226 GLEAN mRNA 868906 869046 0.999676 - . ID=CGI_10025384; scaffold226 TRF Tandem_Repeat 868906 869046 120 + . . scaffold226 GLEAN mRNA 888822 889252 0.754696 + . ID=CGI_10025385; scaffold226 TRF Tandem_Repeat 888822 889252 547 + . . scaffold226 GLEAN mRNA 888822 889252 0.754696 + . ID=CGI_10025385; scaffold226 TRF Tandem_Repeat 888822 889252 641 + . . scaffold226 GLEAN mRNA 894275 894314 0.754696 + . ID=CGI_10025385; scaffold226 TRF Tandem_Repeat 894275 894314 62 + . . scaffold226 GLEAN mRNA 894702 894733 0.754696 + . ID=CGI_10025385; scaffold226 TRF Tandem_Repeat 894702 894733 64 + . . scaffold226 GLEAN mRNA 918937 919041 0.655497 - . ID=CGI_10025388; scaffold226 TRF Tandem_Repeat 918937 919041 74 + . . scaffold226 GLEAN mRNA 918937 919042 0.655497 - . ID=CGI_10025388; scaffold226 TRF Tandem_Repeat 918937 919042 101 + . . scaffold226 GLEAN mRNA 921398 921721 0.655497 - . ID=CGI_10025388; scaffold226 WUBlastX LTR_Gypsy 921398 921721 173 + . . scaffold226 GLEAN mRNA 921740 922651 0.655497 - . ID=CGI_10025388; scaffold226 WUBlastX LTR_Gypsy 921740 922651 217 + . . scaffold226 GLEAN mRNA 921350 921733 0.655497 - . ID=CGI_10025388; scaffold226 WUBlastX LTR_Gypsy 921350 921733 99 + . . scaffold226 GLEAN mRNA 920466 921299 0.655497 - . ID=CGI_10025388; scaffold226 WUBlastX LTR_Gypsy 920466 921299 192 + . . scaffold226 GLEAN mRNA 921740 922240 0.655497 - . ID=CGI_10025388; scaffold226 WUBlastX LTR_Gypsy 921740 922240 251 + . . scaffold226 GLEAN mRNA 920232 921296 0.655497 - . ID=CGI_10025388; scaffold226 WUBlastX LTR_Gypsy 920232 921296 86 + . . scaffold226 GLEAN mRNA 921740 922456 0.655497 - . ID=CGI_10025388; scaffold226 WUBlastX LTR_Gypsy 921740 922456 221 + . . scaffold226 GLEAN mRNA 939106 939153 1 + . ID=CGI_10025389; scaffold226 TRF Tandem_Repeat 939106 939153 78 + . . scaffold226 GLEAN mRNA 948749 948799 0.999415 + . ID=CGI_10025390; scaffold226 TRF Tandem_Repeat 948749 948799 102 + . . scaffold226 GLEAN mRNA 1038332 1039735 0.999648 - . ID=CGI_10025398; scaffold226 TRF Tandem_Repeat 1038332 1039735 719 + . . scaffold226 GLEAN mRNA 1038332 1039732 0.999648 - . ID=CGI_10025398; scaffold226 TRF Tandem_Repeat 1038332 1039732 765 + . . scaffold226 GLEAN mRNA 1038349 1039442 0.999648 - . ID=CGI_10025398; scaffold226 TRF Tandem_Repeat 1038349 1039442 647 + . . scaffold226 GLEAN mRNA 1039718 1040133 0.999648 - . ID=CGI_10025398; scaffold226 TRF Tandem_Repeat 1039718 1040133 423 + . . scaffold226 GLEAN mRNA 1052980 1053387 0.99513 - . ID=CGI_10025399; scaffold226 WUBlastX LINE_L2 1052980 1053387 33 - . . scaffold226 GLEAN mRNA 1052839 1053249 0.99513 - . ID=CGI_10025399; scaffold226 WUBlastX LINE_RTE-X 1052839 1053249 44 - . . scaffold226 GLEAN mRNA 1057662 1057877 0.99513 - . ID=CGI_10025399; scaffold226 WUBlastX DNA_TcMar-Marin 1057662 1057877 65 - . . scaffold226 GLEAN mRNA 1052360 1052854 0.99513 - . ID=CGI_10025399; scaffold226 WUBlastX LINE_RTE-BovB 1052360 1052854 43 - . . scaffold226 GLEAN mRNA 1052956 1053261 0.99513 - . ID=CGI_10025399; scaffold226 WUBlastX LINE_RTE-X 1052956 1053261 115 - . . scaffold226 GLEAN mRNA 1052354 1052758 0.99513 - . ID=CGI_10025399; scaffold226 WUBlastX LINE_RTE-X 1052354 1052758 92 - . . scaffold226 GLEAN mRNA 1058010 1058081 0.99513 - . ID=CGI_10025399; scaffold226 WUBlastX DNA_TcMar-Marin 1058010 1058081 20 - . . scaffold1423 GLEAN mRNA 15275 16018 0.999998 - . ID=CGI_10025403; scaffold1423 TRF Tandem_Repeat 15275 16018 1215 + . . scaffold1423 GLEAN mRNA 18565 18756 0.999998 - . ID=CGI_10025403; scaffold1423 TRF Tandem_Repeat 18565 18756 160 + . . scaffold1423 GLEAN mRNA 18570 18758 0.999998 - . ID=CGI_10025403; scaffold1423 TRF Tandem_Repeat 18570 18758 145 + . . scaffold1423 GLEAN mRNA 26616 26972 0.999998 - . ID=CGI_10025403; scaffold1423 TRF Tandem_Repeat 26616 26972 430 + . . scaffold1423 GLEAN mRNA 27187 27470 0.999998 - . ID=CGI_10025403; scaffold1423 TRF Tandem_Repeat 27187 27470 261 + . . scaffold1423 GLEAN mRNA 23281 23583 0.999998 - . ID=CGI_10025403; scaffold1423 WUBlastX LINE_RTE-X 23281 23583 80 + . . scaffold1423 GLEAN mRNA 23290 23487 0.999998 - . ID=CGI_10025403; scaffold1423 WUBlastX LINE_RTE-X 23290 23487 96 + . . scaffold1423 GLEAN mRNA 51009 51038 0.999349 + . ID=CGI_10025405; scaffold1423 TRF Tandem_Repeat 51009 51038 60 + . . scaffold1423 GLEAN mRNA 52245 52271 0.999349 + . ID=CGI_10025405; scaffold1423 TRF Tandem_Repeat 52245 52271 54 + . . scaffold1423 GLEAN mRNA 52408 52669 0.999349 + . ID=CGI_10025405; scaffold1423 TRF Tandem_Repeat 52408 52669 157 + . . scaffold1423 GLEAN mRNA 64980 65503 0.687535 + . ID=CGI_10025406; scaffold1423 TRF Tandem_Repeat 64980 65503 565 + . . scaffold1423 GLEAN mRNA 69606 69641 0.642146 + . ID=CGI_10025407; scaffold1423 TRF Tandem_Repeat 69606 69641 72 + . . scaffold1423 GLEAN mRNA 70023 70083 0.642146 + . ID=CGI_10025407; scaffold1423 TRF Tandem_Repeat 70023 70083 59 + . . scaffold1423 GLEAN mRNA 70031 70093 0.642146 + . ID=CGI_10025407; scaffold1423 TRF Tandem_Repeat 70031 70093 81 + . . scaffold1423 GLEAN mRNA 114414 114463 1 + . ID=CGI_10025412; scaffold1423 TRF Tandem_Repeat 114414 114463 66 + . . scaffold1423 GLEAN mRNA 123253 123279 1 + . ID=CGI_10025414; scaffold1423 TRF Tandem_Repeat 123253 123279 54 + . . scaffold1423 GLEAN mRNA 143517 143560 0.996496 + . ID=CGI_10025416; scaffold1423 TRF Tandem_Repeat 143517 143560 88 + . . scaffold1423 GLEAN mRNA 174385 174684 0.999415 - . ID=CGI_10025418; scaffold1423 TRF Tandem_Repeat 174385 174684 421 + . . scaffold1423 GLEAN mRNA 195744 195989 1 - . ID=CGI_10025421; scaffold1423 WUBlastX DNA_hAT 195744 195989 96 - . . scaffold1423 GLEAN mRNA 194973 195206 1 - . ID=CGI_10025421; scaffold1423 WUBlastX DNA_hAT 194973 195206 30 - . . scaffold1423 GLEAN mRNA 198099 198314 1 - . ID=CGI_10025421; scaffold1423 WUBlastX DNA_hAT 198099 198314 45 - . . scaffold1423 GLEAN mRNA 196199 197140 1 - . ID=CGI_10025421; scaffold1423 WUBlastX DNA_hAT 196199 197140 328 - . . scaffold1423 GLEAN mRNA 212440 212530 0.999671 - . ID=CGI_10025424; scaffold1423 TRF Tandem_Repeat 212440 212530 62 + . . scaffold1423 GLEAN mRNA 218351 218387 0.999671 - . ID=CGI_10025424; scaffold1423 TRF Tandem_Repeat 218351 218387 74 + . . scaffold1423 GLEAN mRNA 331194 331231 0.456701 - . ID=CGI_10025427; scaffold1423 TRF Tandem_Repeat 331194 331231 67 + . . scaffold1423 GLEAN mRNA 368708 369703 0.989152 - . ID=CGI_10025428; scaffold1423 TRF Tandem_Repeat 368708 369703 811 + . . scaffold1423 GLEAN mRNA 368697 369703 0.989152 - . ID=CGI_10025428; scaffold1423 TRF Tandem_Repeat 368697 369703 903 + . . scaffold1423 GLEAN mRNA 372610 372642 0.989152 - . ID=CGI_10025428; scaffold1423 TRF Tandem_Repeat 372610 372642 66 + . . scaffold1423 GLEAN mRNA 377265 377829 0.989152 - . ID=CGI_10025428; scaffold1423 TRF Tandem_Repeat 377265 377829 1058 + . . scaffold1423 GLEAN mRNA 378849 379101 0.989152 - . ID=CGI_10025428; scaffold1423 TRF Tandem_Repeat 378849 379101 260 + . . scaffold1423 GLEAN mRNA 378860 379101 0.989152 - . ID=CGI_10025428; scaffold1423 TRF Tandem_Repeat 378860 379101 244 + . . scaffold1423 GLEAN mRNA 387093 387117 0.989152 - . ID=CGI_10025428; scaffold1423 TRF Tandem_Repeat 387093 387117 50 + . . scaffold1423 GLEAN mRNA 387115 387249 0.989152 - . ID=CGI_10025428; scaffold1423 TRF Tandem_Repeat 387115 387249 52 + . . scaffold1423 GLEAN mRNA 387093 387253 0.989152 - . ID=CGI_10025428; scaffold1423 TRF Tandem_Repeat 387093 387253 69 + . . scaffold1423 GLEAN mRNA 575287 575345 0.999605 - . ID=CGI_10025431; scaffold1423 TRF Tandem_Repeat 575287 575345 118 + . . scaffold1423 GLEAN mRNA 604266 604417 0.5483 - . ID=CGI_10025433; scaffold1423 TRF Tandem_Repeat 604266 604417 107 + . . scaffold1423 GLEAN mRNA 672101 672412 0.821976 - . ID=CGI_10025436; scaffold1423 WUBlastX DNA_Harbinger 672101 672412 129 + . . scaffold1423 GLEAN mRNA 672412 672507 0.821976 - . ID=CGI_10025436; scaffold1423 WUBlastX DNA_Harbinger 672412 672507 54 + . . scaffold1423 GLEAN mRNA 672506 672619 0.821976 - . ID=CGI_10025436; scaffold1423 WUBlastX DNA_Harbinger 672506 672619 73 + . . scaffold1423 GLEAN mRNA 672954 673139 0.821976 - . ID=CGI_10025436; scaffold1423 WUBlastX DNA_Harbinger 672954 673139 63 + . . scaffold1423 GLEAN mRNA 672131 672466 0.821976 - . ID=CGI_10025436; scaffold1423 WUBlastX DNA_Harbinger 672131 672466 116 + . . scaffold1423 GLEAN mRNA 672954 673109 0.821976 - . ID=CGI_10025436; scaffold1423 WUBlastX DNA_Harbinger 672954 673109 78 + . . scaffold1423 GLEAN mRNA 672839 673024 0.821976 - . ID=CGI_10025436; scaffold1423 WUBlastX DNA_Harbinger 672839 673024 99 + . . scaffold1423 GLEAN mRNA 674007 674138 0.821976 - . ID=CGI_10025436; scaffold1423 WUBlastX DNA_Harbinger 674007 674138 39 - . . scaffold1423 GLEAN mRNA 714036 714395 0.440207 - . ID=CGI_10025438; scaffold1423 WUBlastX LINE_RTE-X 714036 714395 35 + . . scaffold1423 GLEAN mRNA 713796 714317 0.440207 - . ID=CGI_10025438; scaffold1423 WUBlastX LINE_Jockey 713796 714317 64 + . . scaffold1423 GLEAN mRNA 713898 714326 0.440207 - . ID=CGI_10025438; scaffold1423 WUBlastX LINE_RTE-BovB 713898 714326 187 + . . scaffold1423 GLEAN mRNA 714322 714444 0.440207 - . ID=CGI_10025438; scaffold1423 WUBlastX LINE_RTE-BovB 714322 714444 33 + . . scaffold1423 GLEAN mRNA 714696 715832 0.440207 - . ID=CGI_10025438; scaffold1423 WUBlastX LINE_RTE-BovB 714696 715832 418 + . . scaffold1423 GLEAN mRNA 721545 721574 0.440207 - . ID=CGI_10025438; scaffold1423 TRF Tandem_Repeat 721545 721574 60 + . . scaffold1423 GLEAN mRNA 729399 730574 0.440207 - . ID=CGI_10025438; scaffold1423 TRF Tandem_Repeat 729399 730574 1647 + . . scaffold1423 GLEAN mRNA 726073 727014 0.440207 - . ID=CGI_10025438; scaffold1423 WUBlastX LTR_Ngaro 726073 727014 220 - . . scaffold1423 GLEAN mRNA 732071 732259 0.440207 - . ID=CGI_10025438; scaffold1423 WUBlastX LTR_Ngaro 732071 732259 58 - . . scaffold1423 GLEAN mRNA 728530 728958 0.440207 - . ID=CGI_10025438; scaffold1423 WUBlastX LTR_Ngaro 728530 728958 95 - . . scaffold1423 GLEAN mRNA 726990 728552 0.440207 - . ID=CGI_10025438; scaffold1423 WUBlastX LTR_Ngaro 726990 728552 946 - . . scaffold1423 GLEAN mRNA 833155 833182 0.602549 + . ID=CGI_10025440; scaffold1423 TRF Tandem_Repeat 833155 833182 56 + . . scaffold1423 GLEAN mRNA 834872 834973 0.602549 + . ID=CGI_10025440; scaffold1423 TRF Tandem_Repeat 834872 834973 66 + . . scaffold1423 GLEAN mRNA 867572 867622 0.409903 + . ID=CGI_10025441; scaffold1423 TRF Tandem_Repeat 867572 867622 68 + . . scaffold1423 GLEAN mRNA 867572 867634 0.409903 + . ID=CGI_10025441; scaffold1423 TRF Tandem_Repeat 867572 867634 65 + . . scaffold1423 GLEAN mRNA 869121 869341 0.409903 + . ID=CGI_10025441; scaffold1423 TRF Tandem_Repeat 869121 869341 327 + . . scaffold1423 GLEAN mRNA 870015 870206 0.409903 + . ID=CGI_10025441; scaffold1423 TRF Tandem_Repeat 870015 870206 287 + . . scaffold1423 GLEAN mRNA 876959 877010 1 - . ID=CGI_10025442; scaffold1423 TRF Tandem_Repeat 876959 877010 90 + . . scaffold1423 GLEAN mRNA 891299 891615 1 - . ID=CGI_10025442; scaffold1423 TRF Tandem_Repeat 891299 891615 272 + . . scaffold1423 GLEAN mRNA 900226 900302 0.999351 - . ID=CGI_10025443; scaffold1423 TRF Tandem_Repeat 900226 900302 140 + . . scaffold1423 GLEAN mRNA 908392 908733 0.999351 - . ID=CGI_10025443; scaffold1423 TRF Tandem_Repeat 908392 908733 265 + . . scaffold1423 GLEAN mRNA 912425 912990 0.999351 - . ID=CGI_10025443; scaffold1423 TRF Tandem_Repeat 912425 912990 733 + . . scaffold1423 GLEAN mRNA 913081 913264 0.999351 - . ID=CGI_10025443; scaffold1423 TRF Tandem_Repeat 913081 913264 83 + . . scaffold1423 GLEAN mRNA 912420 913398 0.999351 - . ID=CGI_10025443; scaffold1423 TRF Tandem_Repeat 912420 913398 745 + . . scaffold1423 GLEAN mRNA 913289 913398 0.999351 - . ID=CGI_10025443; scaffold1423 TRF Tandem_Repeat 913289 913398 69 + . . scaffold1423 GLEAN mRNA 926581 926624 0.999949 + . ID=CGI_10025444; scaffold1423 TRF Tandem_Repeat 926581 926624 63 + . . scaffold1423 GLEAN mRNA 929515 929559 0.999949 + . ID=CGI_10025444; scaffold1423 TRF Tandem_Repeat 929515 929559 63 + . . scaffold1423 GLEAN mRNA 934867 935317 0.999949 + . ID=CGI_10025444; scaffold1423 TRF Tandem_Repeat 934867 935317 672 + . . scaffold1423 GLEAN mRNA 950659 950890 0.992668 + . ID=CGI_10025445; scaffold1423 TRF Tandem_Repeat 950659 950890 353 + . . scaffold1423 GLEAN mRNA 950659 950929 0.992668 + . ID=CGI_10025445; scaffold1423 TRF Tandem_Repeat 950659 950929 184 + . . scaffold1423 GLEAN mRNA 958306 958366 0.992668 + . ID=CGI_10025446; scaffold1423 TRF Tandem_Repeat 958306 958616 173 + . . scaffold1423 GLEAN mRNA 968624 968857 0.733568 - . ID=CGI_10025447; scaffold1423 TRF Tandem_Repeat 968624 968857 432 + . . scaffold1423 GLEAN mRNA 969140 969469 0.733568 - . ID=CGI_10025447; scaffold1423 TRF Tandem_Repeat 969140 969469 624 + . . scaffold1423 GLEAN mRNA 1002351 1002565 0.987309 - . ID=CGI_10025448; scaffold1423 TRF Tandem_Repeat 1002351 1002565 331 + . . scaffold1423 GLEAN mRNA 1010237 1010434 0.798305 + . ID=CGI_10025449; scaffold1423 TRF Tandem_Repeat 1010237 1010434 292 + . . scaffold1423 GLEAN mRNA 1016718 1018661 0.798305 + . ID=CGI_10025449; scaffold1423 TRF Tandem_Repeat 1016718 1018661 2991 + . . scaffold1423 GLEAN mRNA 1020838 1021990 0.798305 + . ID=CGI_10025449; scaffold1423 TRF Tandem_Repeat 1020838 1021990 1285 + . . scaffold1423 GLEAN mRNA 1060442 1060786 0.980388 + . ID=CGI_10025454; scaffold1423 WUBlastX LTR_Ngaro 1060442 1060786 66 + . . scaffold1423 GLEAN mRNA 1058089 1058757 0.980388 + . ID=CGI_10025454; scaffold1423 WUBlastX LTR_Ngaro 1058089 1058757 143 + . . scaffold1423 GLEAN mRNA 1059099 1060418 0.980388 + . ID=CGI_10025454; scaffold1423 WUBlastX LTR_Ngaro 1059099 1060418 935 + . . scaffold1423 GLEAN mRNA 1058814 1060424 0.980388 + . ID=CGI_10025454; scaffold1423 WUBlastX LTR_Ngaro 1058814 1060424 784 + . . scaffold1188 GLEAN mRNA 31926 31972 1 + . ID=CGI_10025456; scaffold1188 TRF Tandem_Repeat 31926 31972 94 + . . scaffold1188 GLEAN mRNA 35612 35661 1 + . ID=CGI_10025456; scaffold1188 TRF Tandem_Repeat 35612 35661 100 + . . scaffold1188 GLEAN mRNA 112828 114204 0.999999 + . ID=CGI_10025457; scaffold1188 TRF Tandem_Repeat 112828 114204 985 + . . scaffold1188 GLEAN mRNA 112866 114204 0.999999 + . ID=CGI_10025457; scaffold1188 TRF Tandem_Repeat 112866 114204 1384 + . . scaffold1188 GLEAN mRNA 164812 165516 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LINE_Penelope 164812 165516 116 - . . scaffold1188 GLEAN mRNA 175477 176370 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LTR_Gypsy 175477 176370 129 - . . scaffold1188 GLEAN mRNA 170978 172444 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LTR_Gypsy-Cigr 170978 172444 596 - . . scaffold1188 GLEAN mRNA 171257 173533 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LTR_Gypsy-Cigr 171257 173533 1084 - . . scaffold1188 GLEAN mRNA 173484 173930 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LTR_Gypsy-Cigr 173484 173930 432 - . . scaffold1188 GLEAN mRNA 170517 170732 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LTR_Copia 170517 170732 20 - . . scaffold1188 GLEAN mRNA 173475 174059 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LTR_Gypsy 173475 174059 298 - . . scaffold1188 GLEAN mRNA 164809 165408 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LINE_Penelope 164809 165408 205 - . . scaffold1188 GLEAN mRNA 165395 165580 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LINE_Penelope 165395 165580 73 - . . scaffold1188 GLEAN mRNA 173931 175250 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LINE_L1-Tx1 173931 175250 183 + . . scaffold1188 GLEAN mRNA 176089 176592 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LTR_Gypsy 176089 176592 79 - . . scaffold1188 GLEAN mRNA 176592 176924 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LTR_Gypsy 176592 177023 51 - . . scaffold1188 GLEAN mRNA 207571 208014 0.974251 - . ID=CGI_10025462; scaffold1188 WUBlastX LTR_Gypsy 207571 208014 83 - . . scaffold1188 GLEAN mRNA 207150 207197 0.974251 - . ID=CGI_10025462; scaffold1188 WUBlastX LTR_Gypsy 207150 207197 21 - . . scaffold1188 GLEAN mRNA 205624 206739 0.974251 - . ID=CGI_10025462; scaffold1188 WUBlastX LTR_Gypsy-Cigr 205624 206739 178 - . . scaffold1188 GLEAN mRNA 205417 205755 0.974251 - . ID=CGI_10025462; scaffold1188 WUBlastX LTR_Gypsy 205417 205755 27 - . . scaffold1188 GLEAN mRNA 205588 205800 0.974251 - . ID=CGI_10025462; scaffold1188 WUBlastX LTR_Gypsy 205588 205800 76 - . . scaffold1188 GLEAN mRNA 207619 208236 0.974251 - . ID=CGI_10025462; scaffold1188 WUBlastX LTR_Gypsy 207619 208236 36 - . . scaffold1188 GLEAN mRNA 217203 217361 0.80625 + . ID=CGI_10025463; scaffold1188 WUBlastX DNA_Kolobok 217203 217361 75 + . . scaffold1188 GLEAN mRNA 218048 218254 0.80625 + . ID=CGI_10025463; scaffold1188 WUBlastX DNA_Kolobok 218048 218254 79 + . . scaffold1188 GLEAN mRNA 216559 216909 0.80625 + . ID=CGI_10025463; scaffold1188 WUBlastX LINE_Penelope 216559 216909 67 + . . scaffold1188 GLEAN mRNA 216610 216774 0.80625 + . ID=CGI_10025463; scaffold1188 WUBlastX LINE_Penelope 216610 216774 71 + . . scaffold1188 GLEAN mRNA 217203 217409 0.80625 + . ID=CGI_10025463; scaffold1188 WUBlastX DNA_Kolobok 217203 217409 34 + . . scaffold1188 GLEAN mRNA 216082 216906 0.80625 + . ID=CGI_10025463; scaffold1188 WUBlastX LINE_Penelope 216082 216906 42 + . . scaffold1188 GLEAN mRNA 229295 229339 1 - . ID=CGI_10025464; scaffold1188 TRF Tandem_Repeat 229295 229339 56 + . . scaffold1188 GLEAN mRNA 288924 290150 0.924496 + . ID=CGI_10025467; scaffold1188 WUBlastX LTR_Ngaro 288924 290150 531 + . . scaffold1188 GLEAN mRNA 288104 288358 0.924496 + . ID=CGI_10025467; scaffold1188 WUBlastX LTR_Ngaro 288104 288358 75 + . . scaffold1188 GLEAN mRNA 289167 290327 0.924496 + . ID=CGI_10025467; scaffold1188 WUBlastX LTR_Ngaro 289167 290327 735 + . . scaffold1188 GLEAN mRNA 288746 289171 0.924496 + . ID=CGI_10025467; scaffold1188 WUBlastX LTR_Ngaro 288746 289171 238 + . . scaffold1188 GLEAN mRNA 290760 291329 0.924496 + . ID=CGI_10025467; scaffold1188 WUBlastX LTR_Ngaro 290760 291329 302 + . . scaffold1188 GLEAN mRNA 290297 290761 0.924496 + . ID=CGI_10025467; scaffold1188 WUBlastX LTR_Ngaro 290297 290761 190 + . . scaffold1188 GLEAN mRNA 288143 288358 0.924496 + . ID=CGI_10025467; scaffold1188 WUBlastX LTR_Ngaro 288143 288358 112 + . . scaffold1188 GLEAN mRNA 321984 322049 0.481364 - . ID=CGI_10025470; scaffold1188 TRF Tandem_Repeat 321984 322049 62 + . . scaffold1188 GLEAN mRNA 389624 389757 1 - . ID=CGI_10025474; scaffold1188 TRF Tandem_Repeat 389624 389757 99 + . . scaffold1188 GLEAN mRNA 392317 392354 1 - . ID=CGI_10025474; scaffold1188 TRF Tandem_Repeat 392317 392354 58 + . . scaffold1188 GLEAN mRNA 480655 480747 1 + . ID=CGI_10025480; scaffold1188 TRF Tandem_Repeat 480655 480747 186 + . . scaffold1188 GLEAN mRNA 526520 526553 0.999429 + . ID=CGI_10025484; scaffold1188 TRF Tandem_Repeat 526520 526553 59 + . . scaffold1188 GLEAN mRNA 532979 533263 0.999429 + . ID=CGI_10025484; scaffold1188 TRF Tandem_Repeat 532979 533263 273 + . . scaffold1188 GLEAN mRNA 540852 540917 0.999429 + . ID=CGI_10025484; scaffold1188 TRF Tandem_Repeat 540852 540917 69 + . . scaffold1188 GLEAN mRNA 540855 540911 0.999429 + . ID=CGI_10025484; scaffold1188 TRF Tandem_Repeat 540855 540911 78 + . . scaffold1188 GLEAN mRNA 540852 540930 0.999429 + . ID=CGI_10025484; scaffold1188 TRF Tandem_Repeat 540852 540930 72 + . . scaffold1188 GLEAN mRNA 540993 541035 0.999429 + . ID=CGI_10025484; scaffold1188 TRF Tandem_Repeat 540993 541035 59 + . . scaffold1188 GLEAN mRNA 570488 570579 1 + . ID=CGI_10025486; scaffold1188 TRF Tandem_Repeat 570488 570579 116 + . . scaffold1188 GLEAN mRNA 570775 570933 1 + . ID=CGI_10025486; scaffold1188 TRF Tandem_Repeat 570775 570933 151 + . . scaffold1188 GLEAN mRNA 570987 571078 1 + . ID=CGI_10025486; scaffold1188 TRF Tandem_Repeat 570987 571078 87 + . . scaffold1188 GLEAN mRNA 584827 585044 0.614301 + . ID=CGI_10025487; scaffold1188 TRF Tandem_Repeat 584827 585044 296 + . . scaffold1188 GLEAN mRNA 588553 588667 0.614301 + . ID=CGI_10025487; scaffold1188 TRF Tandem_Repeat 588553 588667 110 + . . scaffold1188 GLEAN mRNA 588527 588862 0.614301 + . ID=CGI_10025487; scaffold1188 TRF Tandem_Repeat 588527 588862 399 + . . scaffold1188 GLEAN mRNA 588576 588730 0.614301 + . ID=CGI_10025487; scaffold1188 TRF Tandem_Repeat 588576 588730 79 + . . scaffold1188 GLEAN mRNA 588914 589078 0.614301 + . ID=CGI_10025487; scaffold1188 TRF Tandem_Repeat 588914 589078 127 + . . scaffold1188 GLEAN mRNA 591328 591577 0.614301 + . ID=CGI_10025487; scaffold1188 TRF Tandem_Repeat 591328 591577 353 + . . scaffold1188 GLEAN mRNA 591336 591604 0.614301 + . ID=CGI_10025487; scaffold1188 TRF Tandem_Repeat 591336 591604 194 + . . scaffold1188 GLEAN mRNA 594652 594984 0.614301 + . ID=CGI_10025487; scaffold1188 TRF Tandem_Repeat 594652 594984 380 + . . scaffold1188 GLEAN mRNA 602702 602905 0.759496 + . ID=CGI_10025488; scaffold1188 TRF Tandem_Repeat 602702 602905 214 + . . scaffold1188 GLEAN mRNA 603964 604175 0.759496 + . ID=CGI_10025488; scaffold1188 TRF Tandem_Repeat 603964 604175 239 + . . scaffold1188 GLEAN mRNA 606486 608206 0.759496 + . ID=CGI_10025488; scaffold1188 TRF Tandem_Repeat 606486 608206 2008 + . . scaffold1188 GLEAN mRNA 606486 608206 0.759496 + . ID=CGI_10025488; scaffold1188 TRF Tandem_Repeat 606486 608206 2024 + . . scaffold1188 GLEAN mRNA 606486 608233 0.759496 + . ID=CGI_10025488; scaffold1188 TRF Tandem_Repeat 606486 608233 1772 + . . scaffold1188 GLEAN mRNA 611329 612327 0.993837 + . ID=CGI_10025489; scaffold1188 TRF Tandem_Repeat 611329 612327 1005 + . . scaffold1188 GLEAN mRNA 613651 614056 0.993837 + . ID=CGI_10025489; scaffold1188 TRF Tandem_Repeat 613651 614056 751 + . . scaffold1188 GLEAN mRNA 623517 623558 1 + . ID=CGI_10025491; scaffold1188 TRF Tandem_Repeat 623517 623558 84 + . . scaffold1188 GLEAN mRNA 657104 657283 0.573951 - . ID=CGI_10025493; scaffold1188 WUBlastX LINE_CR1-L2 657104 657283 66 - . . scaffold1188 GLEAN mRNA 656893 657156 0.573951 - . ID=CGI_10025493; scaffold1188 WUBlastX LINE_CR1-L2 656893 657156 92 - . . scaffold1188 GLEAN mRNA 656507 656950 0.573951 - . ID=CGI_10025493; scaffold1188 WUBlastX LINE_L2 656507 656950 50 - . . scaffold1188 GLEAN mRNA 657104 657253 0.573951 - . ID=CGI_10025493; scaffold1188 WUBlastX LINE_CR1-L2 657104 657253 78 - . . scaffold1188 GLEAN mRNA 657098 657391 0.573951 - . ID=CGI_10025493; scaffold1188 WUBlastX LINE_CR1-L2 657098 657391 22 - . . scaffold1188 GLEAN mRNA 673231 673301 0.649414 + . ID=CGI_10025495; scaffold1188 TRF Tandem_Repeat 673231 673301 142 + . . scaffold1188 GLEAN mRNA 676429 676456 0.649414 + . ID=CGI_10025495; scaffold1188 TRF Tandem_Repeat 676429 676456 56 + . . scaffold1188 GLEAN mRNA 682211 682236 0.887715 + . ID=CGI_10025496; scaffold1188 TRF Tandem_Repeat 682211 682236 52 + . . scaffold1188 GLEAN mRNA 693052 693836 0.993906 - . ID=CGI_10025497; scaffold1188 TRF Tandem_Repeat 693052 693836 1196 + . . scaffold1188 GLEAN mRNA 695198 695236 0.993906 - . ID=CGI_10025497; scaffold1188 TRF Tandem_Repeat 695198 695236 78 + . . scaffold1188 GLEAN mRNA 722637 722867 0.544624 + . ID=CGI_10025499; scaffold1188 WUBlastX LINE_RTE-X 722637 722867 33 - . . scaffold1188 GLEAN mRNA 793920 793967 0.991964 + . ID=CGI_10025502; scaffold1188 TRF Tandem_Repeat 793920 793967 60 + . . scaffold1188 GLEAN mRNA 791480 791701 0.991964 + . ID=CGI_10025502; scaffold1188 WUBlastX LINE_L1 791480 791701 109 - . . scaffold1188 GLEAN mRNA 791254 791499 0.991964 + . ID=CGI_10025502; scaffold1188 WUBlastX LINE_L1 791254 791499 90 - . . scaffold1188 GLEAN mRNA 790953 791144 0.991964 + . ID=CGI_10025502; scaffold1188 WUBlastX LINE_L1-Tx1 790953 791144 25 - . . scaffold1188 GLEAN mRNA 791148 791237 0.991964 + . ID=CGI_10025502; scaffold1188 WUBlastX LINE_L1-Tx1 791148 791237 31 - . . scaffold1188 GLEAN mRNA 834971 835004 0.543739 - . ID=CGI_10025508; scaffold1188 TRF Tandem_Repeat 834971 835004 68 + . . scaffold1188 GLEAN mRNA 928436 928474 0.995664 - . ID=CGI_10025510; scaffold1188 TRF Tandem_Repeat 928436 928474 55 + . . scaffold1188 GLEAN mRNA 948403 948429 1 - . ID=CGI_10025512; scaffold1188 TRF Tandem_Repeat 948403 948429 54 + . . scaffold1188 GLEAN mRNA 948717 948808 1 - . ID=CGI_10025512; scaffold1188 TRF Tandem_Repeat 948717 948808 87 + . . scaffold1188 GLEAN mRNA 948895 949022 1 - . ID=CGI_10025512; scaffold1188 TRF Tandem_Repeat 948895 949022 91 + . . scaffold1188 GLEAN mRNA 949249 949342 1 - . ID=CGI_10025512; scaffold1188 TRF Tandem_Repeat 949249 949342 127 + . . scaffold370 GLEAN mRNA 56867 57195 0.999273 - . ID=CGI_10025517; scaffold370 TRF Tandem_Repeat 56867 57195 378 + . . scaffold370 GLEAN mRNA 61134 61193 0.999273 - . ID=CGI_10025517; scaffold370 WUBlastX DNA_TcMar-Marin 61134 61193 30 + . . scaffold370 GLEAN mRNA 61198 61380 0.999273 - . ID=CGI_10025517; scaffold370 WUBlastX DNA_TcMar-Marin 61198 61380 23 + . . scaffold370 GLEAN mRNA 65989 66957 0.999273 - . ID=CGI_10025517; scaffold370 WUBlastX LINE_L1-Tx1 65989 66957 91 - . . scaffold370 GLEAN mRNA 121472 121615 0.7324 - . ID=CGI_10025524; scaffold370 WUBlastX LTR_Gypsy 121472 121615 69 - . . scaffold370 GLEAN mRNA 175840 175879 0.857316 - . ID=CGI_10025527; scaffold370 TRF Tandem_Repeat 175840 175879 80 + . . scaffold370 GLEAN mRNA 178409 178464 0.857316 - . ID=CGI_10025527; scaffold370 TRF Tandem_Repeat 178409 178464 58 + . . scaffold370 GLEAN mRNA 178405 178464 0.857316 - . ID=CGI_10025527; scaffold370 TRF Tandem_Repeat 178405 178464 75 + . . scaffold370 GLEAN mRNA 184025 184116 0.857316 - . ID=CGI_10025527; scaffold370 TRF Tandem_Repeat 184025 184116 130 + . . scaffold370 GLEAN mRNA 184194 184353 0.857316 - . ID=CGI_10025527; scaffold370 TRF Tandem_Repeat 184194 184353 169 + . . scaffold370 GLEAN mRNA 184519 184612 0.857316 - . ID=CGI_10025527; scaffold370 TRF Tandem_Repeat 184519 184612 127 + . . scaffold370 GLEAN mRNA 186521 187263 0.857316 - . ID=CGI_10025527; scaffold370 TRF Tandem_Repeat 186521 187263 950 + . . scaffold370 GLEAN mRNA 188248 188574 0.857316 - . ID=CGI_10025527; scaffold370 WUBlastX LINE_RTE-X 188248 188574 40 - . . scaffold370 GLEAN mRNA 188182 188448 0.857316 - . ID=CGI_10025527; scaffold370 WUBlastX LINE_RTE-X 188182 188448 40 - . . scaffold370 GLEAN mRNA 188290 188448 0.857316 - . ID=CGI_10025527; scaffold370 WUBlastX LINE_RTE-X 188290 188448 67 - . . scaffold370 GLEAN mRNA 188534 188707 0.857316 - . ID=CGI_10025527; scaffold370 WUBlastX LINE_RTE-X 188534 188707 25 - . . scaffold370 GLEAN mRNA 188534 188659 0.857316 - . ID=CGI_10025527; scaffold370 WUBlastX LINE_RTE-X 188534 188659 35 - . . scaffold370 GLEAN mRNA 188290 188487 0.857316 - . ID=CGI_10025527; scaffold370 WUBlastX LINE_RTE-X 188290 188487 51 - . . scaffold370 GLEAN mRNA 213798 214058 0.593383 + . ID=CGI_10025528; scaffold370 WUBlastX LINE_RTE-X 213798 214058 59 + . . scaffold370 GLEAN mRNA 219943 220331 0.499656 - . ID=CGI_10025529; scaffold370 TRF Tandem_Repeat 219943 220331 231 + . . scaffold370 GLEAN mRNA 220009 220359 0.499656 - . ID=CGI_10025529; scaffold370 TRF Tandem_Repeat 220009 220359 531 + . . scaffold370 GLEAN mRNA 213798 214058 0.499656 - . ID=CGI_10025529; scaffold370 WUBlastX LINE_RTE-X 213798 214058 59 + . . scaffold370 GLEAN mRNA 306724 306792 0.791709 + . ID=CGI_10025534; scaffold370 TRF Tandem_Repeat 306724 306792 57 + . . scaffold370 GLEAN mRNA 303684 303699 0.791709 + . ID=CGI_10025534; scaffold370 WUBlastX DNA_PiggyBac 303574 303699 26 - . . scaffold370 GLEAN mRNA 306724 306792 0.99935 - . ID=CGI_10025535; scaffold370 TRF Tandem_Repeat 306724 306792 57 + . . scaffold370 GLEAN mRNA 369938 369991 0.985459 - . ID=CGI_10025540; scaffold370 TRF Tandem_Repeat 369938 369991 54 + . . scaffold370 GLEAN mRNA 426707 426747 0.996812 - . ID=CGI_10025541; scaffold370 TRF Tandem_Repeat 426707 426747 82 + . . scaffold370 GLEAN mRNA 437280 438276 0.613407 + . ID=CGI_10025542; scaffold370 TRF Tandem_Repeat 437280 438276 873 + . . scaffold370 GLEAN mRNA 447613 448955 0.613407 + . ID=CGI_10025542; scaffold370 TRF Tandem_Repeat 447613 448955 1872 + . . scaffold370 GLEAN mRNA 487985 488015 0.615393 + . ID=CGI_10025545; scaffold370 TRF Tandem_Repeat 487985 488015 62 + . . scaffold370 GLEAN mRNA 503090 503130 0.999806 + . ID=CGI_10025547; scaffold370 TRF Tandem_Repeat 503090 503130 82 + . . scaffold370 GLEAN mRNA 574243 574273 0.999624 + . ID=CGI_10025550; scaffold370 TRF Tandem_Repeat 574243 574273 62 + . . scaffold370 GLEAN mRNA 607285 607426 0.991504 - . ID=CGI_10025554; scaffold370 TRF Tandem_Repeat 607285 607426 207 + . . scaffold370 GLEAN mRNA 638084 638633 0.654105 - . ID=CGI_10025557; scaffold370 TRF Tandem_Repeat 638084 638633 712 + . . scaffold370 GLEAN mRNA 663593 663632 0.858 + . ID=CGI_10025558; scaffold370 TRF Tandem_Repeat 663593 663632 80 + . . scaffold370 GLEAN mRNA 739630 739667 1 + . ID=CGI_10025564; scaffold370 TRF Tandem_Repeat 739630 739667 51 + . . scaffold370 GLEAN mRNA 844867 845955 0.855201 + . ID=CGI_10025566; scaffold370 WUBlastX DNA_hAT-hATw 844867 845955 185 + . . scaffold370 GLEAN mRNA 839648 840127 0.855201 + . ID=CGI_10025566; scaffold370 WUBlastX LINE_L1-Tx1 839648 840127 65 - . . scaffold370 GLEAN mRNA 843845 844747 0.855201 + . ID=CGI_10025566; scaffold370 WUBlastX DNA_hAT-hATw 843845 844747 34 + . . scaffold370 GLEAN mRNA 843776 844513 0.855201 + . ID=CGI_10025566; scaffold370 WUBlastX DNA_hAT-hATw 843776 844513 60 + . . scaffold370 GLEAN mRNA 843596 844513 0.855201 + . ID=CGI_10025566; scaffold370 WUBlastX DNA_hAT-hATw 843596 844513 33 + . . scaffold370 GLEAN mRNA 885155 886115 0.978506 + . ID=CGI_10025567; scaffold370 TRF Tandem_Repeat 885155 886115 1062 + . . scaffold370 GLEAN mRNA 911785 912042 0.687174 + . ID=CGI_10025569; scaffold370 TRF Tandem_Repeat 911785 912042 399 + . . scaffold370 GLEAN mRNA 912242 912576 0.687174 + . ID=CGI_10025569; scaffold370 TRF Tandem_Repeat 912242 912576 301 + . . scaffold370 GLEAN mRNA 933199 933240 0.556562 + . ID=CGI_10025570; scaffold370 TRF Tandem_Repeat 933199 933240 66 + . . scaffold370 GLEAN mRNA 939426 939642 0.556562 + . ID=CGI_10025570; scaffold370 TRF Tandem_Repeat 939426 939642 133 + . . scaffold370 GLEAN mRNA 945867 945927 0.556562 + . ID=CGI_10025570; scaffold370 TRF Tandem_Repeat 945867 945927 122 + . . scaffold370 GLEAN mRNA 949643 949673 0.556562 + . ID=CGI_10025570; scaffold370 TRF Tandem_Repeat 949643 949673 62 + . . scaffold370 GLEAN mRNA 968350 968377 0.999979 + . ID=CGI_10025571; scaffold370 TRF Tandem_Repeat 968350 968377 56 + . . scaffold370 GLEAN mRNA 989134 989225 0.645351 - . ID=CGI_10025574; scaffold370 TRF Tandem_Repeat 989134 989225 148 + . . scaffold370 GLEAN mRNA 989134 989225 0.645351 - . ID=CGI_10025574; scaffold370 TRF Tandem_Repeat 989134 989225 152 + . . scaffold370 GLEAN mRNA 990715 990762 0.645351 - . ID=CGI_10025574; scaffold370 TRF Tandem_Repeat 990715 990762 62 + . . scaffold370 GLEAN mRNA 991501 991556 0.645351 - . ID=CGI_10025574; scaffold370 TRF Tandem_Repeat 991501 991556 71 + . . scaffold370 GLEAN mRNA 991499 991552 0.645351 - . ID=CGI_10025574; scaffold370 TRF Tandem_Repeat 991499 991552 63 + . . scaffold370 GLEAN mRNA 1000169 1000214 1 - . ID=CGI_10025575; scaffold370 TRF Tandem_Repeat 1000169 1000214 92 + . . scaffold370 GLEAN mRNA 1000260 1000298 1 - . ID=CGI_10025575; scaffold370 TRF Tandem_Repeat 1000260 1000298 78 + . . scaffold370 GLEAN mRNA 1000585 1000645 1 - . ID=CGI_10025575; scaffold370 TRF Tandem_Repeat 1000585 1000645 122 + . . scaffold370 GLEAN mRNA 1017199 1017239 0.606623 - . ID=CGI_10025577; scaffold370 TRF Tandem_Repeat 1017199 1017239 82 + . . scaffold370 GLEAN mRNA 1026282 1026762 0.606623 - . ID=CGI_10025577; scaffold370 TRF Tandem_Repeat 1026282 1026762 671 + . . scaffold370 GLEAN mRNA 1027983 1028229 0.606623 - . ID=CGI_10025577; scaffold370 TRF Tandem_Repeat 1027983 1028229 377 + . . scaffold370 GLEAN mRNA 1028664 1028710 0.606623 - . ID=CGI_10025577; scaffold370 TRF Tandem_Repeat 1028664 1028710 94 + . . scaffold370 GLEAN mRNA 1028726 1028867 0.606623 - . ID=CGI_10025577; scaffold370 TRF Tandem_Repeat 1028726 1028867 167 + . . scaffold370 GLEAN mRNA 1028728 1028885 0.606623 - . ID=CGI_10025577; scaffold370 TRF Tandem_Repeat 1028728 1028885 133 + . . scaffold370 GLEAN mRNA 1028983 1029209 0.606623 - . ID=CGI_10025577; scaffold370 TRF Tandem_Repeat 1028983 1029209 274 + . . scaffold370 GLEAN mRNA 1030034 1030085 0.606623 - . ID=CGI_10025577; scaffold370 TRF Tandem_Repeat 1030034 1030085 50 + . . scaffold370 GLEAN mRNA 1027983 1028229 1 + . ID=CGI_10025578; scaffold370 TRF Tandem_Repeat 1027983 1028229 377 + . . scaffold370 GLEAN mRNA 1028664 1028710 1 + . ID=CGI_10025578; scaffold370 TRF Tandem_Repeat 1028664 1028710 94 + . . scaffold370 GLEAN mRNA 1028726 1028867 1 + . ID=CGI_10025578; scaffold370 TRF Tandem_Repeat 1028726 1028867 167 + . . scaffold370 GLEAN mRNA 1028728 1028885 1 + . ID=CGI_10025578; scaffold370 TRF Tandem_Repeat 1028728 1028885 133 + . . scaffold370 GLEAN mRNA 1028983 1029209 1 + . ID=CGI_10025578; scaffold370 TRF Tandem_Repeat 1028983 1029209 274 + . . scaffold370 GLEAN mRNA 1030034 1030085 1 + . ID=CGI_10025578; scaffold370 TRF Tandem_Repeat 1030034 1030085 50 + . . scaffold370 GLEAN mRNA 1040474 1040512 0.758246 + . ID=CGI_10025579; scaffold370 TRF Tandem_Repeat 1040474 1040512 78 + . . scaffold370 GLEAN mRNA 1041607 1041669 0.758246 + . ID=CGI_10025579; scaffold370 TRF Tandem_Repeat 1041607 1041669 117 + . . scaffold370 GLEAN mRNA 1041731 1041778 0.758246 + . ID=CGI_10025579; scaffold370 TRF Tandem_Repeat 1041731 1041778 87 + . . scaffold370 GLEAN mRNA 1055736 1055793 0.758246 + . ID=CGI_10025579; scaffold370 TRF Tandem_Repeat 1055736 1055793 116 + . . scaffold370 GLEAN mRNA 1084937 1084971 1 - . ID=CGI_10025580; scaffold370 TRF Tandem_Repeat 1084937 1084971 52 + . . scaffold168 GLEAN mRNA 21185 21262 0.990039 - . ID=CGI_10025582; scaffold168 TRF Tandem_Repeat 21185 21262 138 + . . scaffold168 GLEAN mRNA 20985 21176 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_CR1 20985 21176 96 - . . scaffold168 GLEAN mRNA 20329 20493 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_CR1 20329 20493 35 - . . scaffold168 GLEAN mRNA 20667 20744 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_RTE-X 20667 20744 24 - . . scaffold168 GLEAN mRNA 19689 20042 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_RTE-X 19689 20042 58 - . . scaffold168 GLEAN mRNA 20158 20283 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_RTE-X 20158 20283 58 - . . scaffold168 GLEAN mRNA 20356 20673 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_RTE-X 20356 20673 133 - . . scaffold168 GLEAN mRNA 20688 21128 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_RTE-X 20688 21128 111 - . . scaffold168 GLEAN mRNA 20260 20466 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_CR1 20260 20466 21 - . . scaffold168 GLEAN mRNA 138406 138455 0.333009 + . ID=CGI_10025585; scaffold168 TRF Tandem_Repeat 138406 138455 93 + . . scaffold168 GLEAN mRNA 179314 179562 0.805771 - . ID=CGI_10025586; scaffold168 WUBlastX DNA_MuDR 179314 179562 101 - . . scaffold168 GLEAN mRNA 178687 178815 0.805771 - . ID=CGI_10025586; scaffold168 WUBlastX DNA_MuDR 178687 178815 50 - . . scaffold168 GLEAN mRNA 178411 178497 0.805771 - . ID=CGI_10025586; scaffold168 WUBlastX DNA_MuDR 178411 178497 30 - . . scaffold168 GLEAN mRNA 178618 178851 0.805771 - . ID=CGI_10025586; scaffold168 WUBlastX DNA_MuDR 178618 178851 34 - . . scaffold168 GLEAN mRNA 179668 179853 0.805771 - . ID=CGI_10025586; scaffold168 WUBlastX DNA_MuDR 179668 179853 24 - . . scaffold168 GLEAN mRNA 178971 179180 0.805771 - . ID=CGI_10025586; scaffold168 WUBlastX DNA_MuDR 178971 179180 56 - . . scaffold168 GLEAN mRNA 178968 179126 0.805771 - . ID=CGI_10025586; scaffold168 WUBlastX DNA_MuDR 178968 179126 62 - . . scaffold168 GLEAN mRNA 179317 179649 0.805771 - . ID=CGI_10025586; scaffold168 WUBlastX DNA_MuDR 179317 179649 71 - . . scaffold168 GLEAN mRNA 182095 182274 0.805771 - . ID=CGI_10025586; scaffold168 WUBlastX LINE_CR1-L2 182095 182274 49 + . . scaffold168 GLEAN mRNA 269458 269665 0.650157 + . ID=CGI_10025588; scaffold168 TRF Tandem_Repeat 269458 269665 150 + . . scaffold168 GLEAN mRNA 321488 321554 0.996215 - . ID=CGI_10025590; scaffold168 TRF Tandem_Repeat 321488 321554 80 + . . scaffold168 GLEAN mRNA 323206 323248 0.996215 - . ID=CGI_10025590; scaffold168 TRF Tandem_Repeat 323206 323248 86 + . . scaffold168 GLEAN mRNA 323546 323579 0.996215 - . ID=CGI_10025590; scaffold168 TRF Tandem_Repeat 323546 323579 59 + . . scaffold168 GLEAN mRNA 327735 327801 0.996215 - . ID=CGI_10025590; scaffold168 TRF Tandem_Repeat 327735 327801 89 + . . scaffold168 GLEAN mRNA 331042 331506 0.996215 - . ID=CGI_10025590; scaffold168 WUBlastX LINE_L2 331042 331506 122 - . . scaffold168 GLEAN mRNA 434597 434638 1 + . ID=CGI_10025593; scaffold168 TRF Tandem_Repeat 434597 434638 50 + . . scaffold168 GLEAN mRNA 434803 435613 1 + . ID=CGI_10025593; scaffold168 TRF Tandem_Repeat 434803 435613 1500 + . . scaffold168 GLEAN mRNA 473941 473991 0.998042 - . ID=CGI_10025596; scaffold168 TRF Tandem_Repeat 473941 473991 50 + . . scaffold168 GLEAN mRNA 565332 565721 1 + . ID=CGI_10025598; scaffold168 TRF Tandem_Repeat 565332 565721 480 + . . scaffold168 GLEAN mRNA 565498 565692 1 + . ID=CGI_10025598; scaffold168 TRF Tandem_Repeat 565498 565692 94 + . . scaffold168 GLEAN mRNA 586906 587757 0.430988 + . ID=CGI_10025600; scaffold168 WUBlastX LINE_L2 586906 587757 186 - . . scaffold168 GLEAN mRNA 586669 587613 0.430988 + . ID=CGI_10025600; scaffold168 WUBlastX LINE_RTE-X 586669 587613 631 - . . scaffold168 GLEAN mRNA 586651 586752 0.430988 + . ID=CGI_10025600; scaffold168 WUBlastX LINE_Jockey 586651 586752 40 - . . scaffold168 GLEAN mRNA 593065 593140 0.430988 + . ID=CGI_10025600; scaffold168 TRF Tandem_Repeat 593065 593140 145 + . . scaffold168 GLEAN mRNA 670164 670234 1 - . ID=CGI_10025602; scaffold168 TRF Tandem_Repeat 670164 670234 54 + . . scaffold168 GLEAN mRNA 700868 701712 0.996603 + . ID=CGI_10025605; scaffold168 TRF Tandem_Repeat 700868 701712 1195 + . . scaffold168 GLEAN mRNA 700868 701712 0.805022 - . ID=CGI_10025606; scaffold168 TRF Tandem_Repeat 700868 701712 1195 + . . scaffold168 GLEAN mRNA 708450 708920 0.805022 - . ID=CGI_10025606; scaffold168 WUBlastX LINE_CR1 708450 708920 24 + . . scaffold168 GLEAN mRNA 708450 708920 0.999415 + . ID=CGI_10025607; scaffold168 WUBlastX LINE_CR1 708450 708920 24 + . . scaffold168 GLEAN mRNA 720182 720222 1 - . ID=CGI_10025608; scaffold168 TRF Tandem_Repeat 720182 720222 82 + . . scaffold168 GLEAN mRNA 740871 740902 0.777732 - . ID=CGI_10025610; scaffold168 TRF Tandem_Repeat 740871 740902 64 + . . scaffold168 GLEAN mRNA 742235 742270 0.777732 - . ID=CGI_10025610; scaffold168 TRF Tandem_Repeat 742235 742270 63 + . . scaffold168 GLEAN mRNA 742847 742916 0.777732 - . ID=CGI_10025610; scaffold168 TRF Tandem_Repeat 742847 742916 140 + . . scaffold168 GLEAN mRNA 752318 752824 0.683894 - . ID=CGI_10025611; scaffold168 WUBlastX LINE_L1 752318 752824 53 - . . scaffold168 GLEAN mRNA 789266 789336 0.999554 - . ID=CGI_10025612; scaffold168 TRF Tandem_Repeat 789266 789336 133 + . . scaffold168 GLEAN mRNA 796934 796986 0.999554 - . ID=CGI_10025612; scaffold168 TRF Tandem_Repeat 796934 796986 106 + . . scaffold168 GLEAN mRNA 797599 797646 0.999554 - . ID=CGI_10025612; scaffold168 TRF Tandem_Repeat 797599 797646 62 + . . scaffold168 GLEAN mRNA 800114 800152 0.999554 - . ID=CGI_10025612; scaffold168 TRF Tandem_Repeat 800114 800152 51 + . . scaffold168 GLEAN mRNA 800945 801004 0.999554 - . ID=CGI_10025612; scaffold168 TRF Tandem_Repeat 800945 801004 120 + . . scaffold168 GLEAN mRNA 819950 820153 0.374227 - . ID=CGI_10025613; scaffold168 TRF Tandem_Repeat 819950 820153 99 + . . scaffold168 GLEAN mRNA 819943 820424 0.374227 - . ID=CGI_10025613; scaffold168 TRF Tandem_Repeat 819943 820424 538 + . . scaffold168 GLEAN mRNA 820160 820304 0.374227 - . ID=CGI_10025613; scaffold168 TRF Tandem_Repeat 820160 820304 75 + . . scaffold168 GLEAN mRNA 821370 822116 0.374227 - . ID=CGI_10025613; scaffold168 TRF Tandem_Repeat 821370 822116 656 + . . scaffold168 GLEAN mRNA 852013 852067 0.648544 - . ID=CGI_10025614; scaffold168 TRF Tandem_Repeat 852013 852067 58 + . . scaffold168 GLEAN mRNA 852020 852066 0.648544 - . ID=CGI_10025614; scaffold168 TRF Tandem_Repeat 852020 852066 67 + . . scaffold168 GLEAN mRNA 851300 852009 0.648544 - . ID=CGI_10025614; scaffold168 TRF Tandem_Repeat 851300 852009 930 + . . scaffold168 GLEAN mRNA 863449 864738 1 - . ID=CGI_10025616; scaffold168 WUBlastX DNA_hAT 863449 864837 26 - . . scaffold168 GLEAN mRNA 877320 878021 0.863485 - . ID=CGI_10025618; scaffold168 TRF Tandem_Repeat 877320 878021 1051 + . . scaffold168 GLEAN mRNA 877320 878021 1 + . ID=CGI_10025619; scaffold168 TRF Tandem_Repeat 877320 878021 1051 + . . scaffold168 GLEAN mRNA 897908 897959 0.889923 + . ID=CGI_10025620; scaffold168 TRF Tandem_Repeat 897908 897959 104 + . . scaffold168 GLEAN mRNA 905225 905261 0.882177 + . ID=CGI_10025621; scaffold168 TRF Tandem_Repeat 905225 905261 74 + . . scaffold168 GLEAN mRNA 906400 906435 0.882177 + . ID=CGI_10025621; scaffold168 TRF Tandem_Repeat 906400 906435 72 + . . scaffold168 GLEAN mRNA 906451 906513 0.882177 + . ID=CGI_10025621; scaffold168 TRF Tandem_Repeat 906451 906513 126 + . . scaffold168 GLEAN mRNA 997759 999378 0.992438 - . ID=CGI_10025624; scaffold168 WUBlastX DNA_PiggyBac 997759 999378 494 - . . scaffold168 GLEAN mRNA 1003387 1003413 0.992438 - . ID=CGI_10025624; scaffold168 TRF Tandem_Repeat 1003387 1003413 54 + . . scaffold168 GLEAN mRNA 1062983 1063270 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1062983 1063270 171 + . . scaffold168 GLEAN mRNA 1061885 1062061 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1061885 1062061 26 + . . scaffold168 GLEAN mRNA 1062346 1062465 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1062346 1062465 60 + . . scaffold168 GLEAN mRNA 1062911 1063264 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1062911 1063264 115 + . . scaffold168 GLEAN mRNA 1062346 1062504 1 + . ID=CGI_10025626; scaffold168 WUBlastX DNA_TcMar-Tc1 1062346 1062504 33 + . . scaffold168 GLEAN mRNA 1062983 1063270 0.901342 - . ID=CGI_10025627; scaffold168 WUBlastX DNA_TcMar-Tc1 1062983 1063270 171 + . . scaffold168 GLEAN mRNA 1061885 1062061 0.901342 - . ID=CGI_10025627; scaffold168 WUBlastX DNA_TcMar-Tc1 1061885 1062061 26 + . . scaffold168 GLEAN mRNA 1062346 1062465 0.901342 - . ID=CGI_10025627; scaffold168 WUBlastX DNA_TcMar-Tc1 1062346 1062465 60 + . . scaffold168 GLEAN mRNA 1062911 1063264 0.901342 - . ID=CGI_10025627; scaffold168 WUBlastX DNA_TcMar-Tc1 1062911 1063264 115 + . . scaffold168 GLEAN mRNA 1062346 1062504 0.901342 - . ID=CGI_10025627; scaffold168 WUBlastX DNA_TcMar-Tc1 1062346 1062504 33 + . . scaffold168 GLEAN mRNA 1089258 1089286 0.997963 + . ID=CGI_10025629; scaffold168 TRF Tandem_Repeat 1089258 1089286 58 + . . scaffold121 GLEAN mRNA 9022 9158 0.702214 + . ID=CGI_10025630; scaffold121 TRF Tandem_Repeat 9022 9158 213 + . . scaffold121 GLEAN mRNA 25487 27198 0.365749 + . ID=CGI_10025631; scaffold121 TRF Tandem_Repeat 25487 27198 2309 + . . scaffold121 GLEAN mRNA 46645 46873 0.999995 + . ID=CGI_10025633; scaffold121 TRF Tandem_Repeat 46645 46873 156 + . . scaffold121 GLEAN mRNA 46645 46873 0.999995 + . ID=CGI_10025633; scaffold121 TRF Tandem_Repeat 46645 46873 188 + . . scaffold121 GLEAN mRNA 47200 47286 0.999995 + . ID=CGI_10025633; scaffold121 TRF Tandem_Repeat 47200 47286 102 + . . scaffold121 GLEAN mRNA 49297 49326 0.999995 + . ID=CGI_10025633; scaffold121 TRF Tandem_Repeat 49297 49326 60 + . . scaffold121 GLEAN mRNA 49340 49372 0.999995 + . ID=CGI_10025633; scaffold121 TRF Tandem_Repeat 49340 49372 57 + . . scaffold121 GLEAN mRNA 64168 64225 0.740138 - . ID=CGI_10025634; scaffold121 TRF Tandem_Repeat 64168 64225 116 + . . scaffold121 GLEAN mRNA 68895 69043 0.740138 - . ID=CGI_10025634; scaffold121 TRF Tandem_Repeat 68895 69043 160 + . . scaffold121 GLEAN mRNA 102941 102974 0.967884 - . ID=CGI_10025636; scaffold121 TRF Tandem_Repeat 102941 102974 50 + . . scaffold121 GLEAN mRNA 149340 149466 1 - . ID=CGI_10025637; scaffold121 TRF Tandem_Repeat 149340 149466 98 + . . scaffold121 GLEAN mRNA 153227 153265 1 - . ID=CGI_10025637; scaffold121 TRF Tandem_Repeat 153227 153265 78 + . . scaffold121 GLEAN mRNA 159616 159737 0.999986 + . ID=CGI_10025638; scaffold121 TRF Tandem_Repeat 159616 159737 156 + . . scaffold121 GLEAN mRNA 188431 188684 0.755624 - . ID=CGI_10025639; scaffold121 TRF Tandem_Repeat 188431 188684 203 + . . scaffold121 GLEAN mRNA 193091 193131 0.838278 + . ID=CGI_10025640; scaffold121 TRF Tandem_Repeat 193091 193131 82 + . . scaffold121 GLEAN mRNA 193836 193909 0.838278 + . ID=CGI_10025640; scaffold121 TRF Tandem_Repeat 193836 193909 148 + . . scaffold121 GLEAN mRNA 196935 197022 0.838278 + . ID=CGI_10025640; scaffold121 TRF Tandem_Repeat 196935 197022 126 + . . scaffold121 GLEAN mRNA 200485 200578 0.838278 + . ID=CGI_10025640; scaffold121 TRF Tandem_Repeat 200485 200578 64 + . . scaffold121 GLEAN mRNA 200605 200654 0.838278 + . ID=CGI_10025640; scaffold121 TRF Tandem_Repeat 200605 200654 100 + . . scaffold121 GLEAN mRNA 356213 356818 0.998475 - . ID=CGI_10025644; scaffold121 WUBlastX LINE_RTE-X 356213 356818 137 + . . scaffold121 GLEAN mRNA 366366 366417 1 + . ID=CGI_10025645; scaffold121 TRF Tandem_Repeat 366366 366417 50 + . . scaffold121 GLEAN mRNA 366368 366410 1 + . ID=CGI_10025645; scaffold121 TRF Tandem_Repeat 366368 366410 50 + . . scaffold121 GLEAN mRNA 366422 367369 1 + . ID=CGI_10025645; scaffold121 TRF Tandem_Repeat 366422 367369 1304 + . . scaffold121 GLEAN mRNA 375187 376246 1 + . ID=CGI_10025645; scaffold121 TRF Tandem_Repeat 375187 376246 1042 + . . scaffold121 GLEAN mRNA 414478 414529 0.677541 - . ID=CGI_10025650; scaffold121 TRF Tandem_Repeat 414478 414529 104 + . . scaffold121 GLEAN mRNA 414997 415040 0.677541 - . ID=CGI_10025650; scaffold121 TRF Tandem_Repeat 414997 415040 88 + . . scaffold121 GLEAN mRNA 474603 474637 0.999949 - . ID=CGI_10025653; scaffold121 TRF Tandem_Repeat 474603 474637 61 + . . scaffold121 GLEAN mRNA 492355 492396 0.999495 - . ID=CGI_10025655; scaffold121 TRF Tandem_Repeat 492355 492396 84 + . . scaffold121 GLEAN mRNA 498854 498918 1 - . ID=CGI_10025656; scaffold121 TRF Tandem_Repeat 498854 498918 121 + . . scaffold121 GLEAN mRNA 500372 500532 1 - . ID=CGI_10025656; scaffold121 TRF Tandem_Repeat 500372 500532 134 + . . scaffold121 GLEAN mRNA 502734 502771 1 - . ID=CGI_10025656; scaffold121 TRF Tandem_Repeat 502734 502771 58 + . . scaffold121 GLEAN mRNA 507570 507634 0.995336 - . ID=CGI_10025657; scaffold121 TRF Tandem_Repeat 507570 507634 96 + . . scaffold121 GLEAN mRNA 509583 509621 0.995336 - . ID=CGI_10025657; scaffold121 TRF Tandem_Repeat 509583 509621 78 + . . scaffold121 GLEAN mRNA 509649 510224 0.995336 - . ID=CGI_10025657; scaffold121 WUBlastX LINE_L1 509649 510224 38 - . . scaffold121 GLEAN mRNA 509658 510074 0.995336 - . ID=CGI_10025657; scaffold121 WUBlastX LINE_L1-Tx1 509658 510074 97 - . . scaffold121 GLEAN mRNA 542274 543324 0.993584 - . ID=CGI_10025660; scaffold121 TRF Tandem_Repeat 542274 543324 1951 + . . scaffold121 GLEAN mRNA 543497 543542 0.993584 - . ID=CGI_10025660; scaffold121 TRF Tandem_Repeat 543497 543542 67 + . . scaffold121 GLEAN mRNA 560717 560902 0.993584 - . ID=CGI_10025660; scaffold121 TRF Tandem_Repeat 560717 560902 238 + . . scaffold121 GLEAN mRNA 574581 574609 0.993584 - . ID=CGI_10025660; scaffold121 TRF Tandem_Repeat 574581 574609 51 + . . scaffold121 GLEAN mRNA 574581 574616 0.993584 - . ID=CGI_10025660; scaffold121 TRF Tandem_Repeat 574581 574616 51 + . . scaffold121 GLEAN mRNA 592734 592785 0.993584 - . ID=CGI_10025660; scaffold121 TRF Tandem_Repeat 592734 592785 104 + . . scaffold121 GLEAN mRNA 612471 613483 0.999675 + . ID=CGI_10025661; scaffold121 TRF Tandem_Repeat 612471 613483 1139 + . . scaffold121 GLEAN mRNA 764132 764264 0.999351 + . ID=CGI_10025674; scaffold121 TRF Tandem_Repeat 764132 764264 236 + . . scaffold121 GLEAN mRNA 764185 764284 0.999351 + . ID=CGI_10025674; scaffold121 TRF Tandem_Repeat 764185 764284 56 + . . scaffold121 GLEAN mRNA 764665 764704 0.999351 + . ID=CGI_10025674; scaffold121 TRF Tandem_Repeat 764665 764704 80 + . . scaffold121 GLEAN mRNA 767281 767535 0.999351 + . ID=CGI_10025674; scaffold121 TRF Tandem_Repeat 767281 767535 395 + . . scaffold121 GLEAN mRNA 815893 815932 0.898543 + . ID=CGI_10025678; scaffold121 TRF Tandem_Repeat 815893 815932 53 + . . scaffold121 GLEAN mRNA 833799 833845 1 - . ID=CGI_10025680; scaffold121 TRF Tandem_Repeat 833799 833845 69 + . . scaffold121 GLEAN mRNA 874287 874709 0.999211 + . ID=CGI_10025682; scaffold121 WUBlastX DNA_En-Spm 874287 874709 20 + . . scaffold121 GLEAN mRNA 873837 874085 0.999211 + . ID=CGI_10025682; scaffold121 WUBlastX LTR_Copia 873699 874085 26 + . . scaffold121 GLEAN mRNA 886977 887089 0.942955 - . ID=CGI_10025683; scaffold121 TRF Tandem_Repeat 886977 887089 65 + . . scaffold121 GLEAN mRNA 887051 887309 0.942955 - . ID=CGI_10025683; scaffold121 TRF Tandem_Repeat 887051 887309 80 + . . scaffold121 GLEAN mRNA 888101 888854 0.942955 - . ID=CGI_10025683; scaffold121 TRF Tandem_Repeat 888101 888854 1070 + . . scaffold121 GLEAN mRNA 888966 888991 0.942955 - . ID=CGI_10025683; scaffold121 TRF Tandem_Repeat 888966 888991 52 + . . scaffold121 GLEAN mRNA 893831 893872 0.942955 - . ID=CGI_10025683; scaffold121 TRF Tandem_Repeat 893831 893872 84 + . . scaffold121 GLEAN mRNA 894430 894703 0.942955 - . ID=CGI_10025683; scaffold121 TRF Tandem_Repeat 894430 894703 295 + . . scaffold121 GLEAN mRNA 909264 909503 0.999676 - . ID=CGI_10025685; scaffold121 WUBlastX LINE_R2-Hero 909264 909503 61 + . . scaffold121 GLEAN mRNA 965886 965938 0.27118 - . ID=CGI_10025689; scaffold121 TRF Tandem_Repeat 965886 965938 106 + . . scaffold121 GLEAN mRNA 965994 966033 0.27118 - . ID=CGI_10025689; scaffold121 TRF Tandem_Repeat 965994 966033 80 + . . scaffold121 GLEAN mRNA 974392 974447 0.27118 - . ID=CGI_10025689; scaffold121 TRF Tandem_Repeat 974392 974447 112 + . . scaffold121 GLEAN mRNA 982963 983011 1 + . ID=CGI_10025690; scaffold121 TRF Tandem_Repeat 982963 983011 89 + . . scaffold121 GLEAN mRNA 985430 985490 1 + . ID=CGI_10025690; scaffold121 TRF Tandem_Repeat 985430 985490 113 + . . scaffold121 GLEAN mRNA 990831 991014 0.999633 - . ID=CGI_10025691; scaffold121 TRF Tandem_Repeat 990831 991014 262 + . . scaffold121 GLEAN mRNA 990807 991014 0.999633 - . ID=CGI_10025691; scaffold121 TRF Tandem_Repeat 990807 991014 254 + . . scaffold121 GLEAN mRNA 1020972 1021021 0.292296 - . ID=CGI_10025693; scaffold121 TRF Tandem_Repeat 1020972 1021021 50 + . . scaffold121 GLEAN mRNA 1046852 1046885 0.598054 + . ID=CGI_10025694; scaffold121 TRF Tandem_Repeat 1046852 1046885 61 + . . scaffold121 GLEAN mRNA 1054972 1055676 0.997299 - . ID=CGI_10025695; scaffold121 TRF Tandem_Repeat 1054972 1055676 728 + . . scaffold121 GLEAN mRNA 1064824 1064871 0.997299 - . ID=CGI_10025695; scaffold121 TRF Tandem_Repeat 1064824 1064871 96 + . . scaffold354 GLEAN mRNA 48741 48845 0.140194 - . ID=CGI_10025696; scaffold354 WUBlastX LTR_Gypsy 48741 48845 21 + . . scaffold354 GLEAN mRNA 55714 55740 0.140194 - . ID=CGI_10025696; scaffold354 TRF Tandem_Repeat 55714 55740 54 + . . scaffold354 GLEAN mRNA 49636 51252 0.140194 - . ID=CGI_10025696; scaffold354 WUBlastX LTR_DIRS 49636 51252 773 + . . scaffold354 GLEAN mRNA 70926 70988 0.140194 - . ID=CGI_10025696; scaffold354 TRF Tandem_Repeat 70926 70988 126 + . . scaffold354 GLEAN mRNA 72809 73513 0.140194 - . ID=CGI_10025696; scaffold354 WUBlastX LINE_RTE-X 72809 73513 35 + . . scaffold354 GLEAN mRNA 72893 73009 0.140194 - . ID=CGI_10025696; scaffold354 WUBlastX LINE_RTE-X 72893 73009 35 + . . scaffold354 GLEAN mRNA 73262 73519 0.140194 - . ID=CGI_10025696; scaffold354 WUBlastX LINE_RTE-X 73262 73519 38 + . . scaffold354 GLEAN mRNA 73256 73615 0.140194 - . ID=CGI_10025696; scaffold354 WUBlastX LINE_RTE-X 73256 73615 26 + . . scaffold354 GLEAN mRNA 48801 49511 0.140194 - . ID=CGI_10025696; scaffold354 WUBlastX LTR_DIRS 48801 49511 134 + . . scaffold354 GLEAN mRNA 98471 98504 1 - . ID=CGI_10025697; scaffold354 TRF Tandem_Repeat 98471 98504 68 + . . scaffold354 GLEAN mRNA 128759 128871 0.496488 + . ID=CGI_10025699; scaffold354 TRF Tandem_Repeat 128759 128871 138 + . . scaffold354 GLEAN mRNA 128948 129102 0.496488 + . ID=CGI_10025699; scaffold354 TRF Tandem_Repeat 128948 129102 136 + . . scaffold354 GLEAN mRNA 128298 128726 0.496488 + . ID=CGI_10025699; scaffold354 WUBlastX LINE_Penelope 128298 128726 76 - . . scaffold354 GLEAN mRNA 129611 129712 0.496488 + . ID=CGI_10025699; scaffold354 WUBlastX LINE_Penelope 129611 129712 24 - . . scaffold354 GLEAN mRNA 140831 141037 0.54483 - . ID=CGI_10025700; scaffold354 WUBlastX LTR_Ngaro 140831 141037 100 + . . scaffold354 GLEAN mRNA 141037 141276 0.54483 - . ID=CGI_10025700; scaffold354 WUBlastX LTR_Ngaro 141037 141276 109 + . . scaffold354 GLEAN mRNA 140831 141037 0.996603 + . ID=CGI_10025701; scaffold354 WUBlastX LTR_Ngaro 140831 141037 100 + . . scaffold354 GLEAN mRNA 141037 141276 0.996603 + . ID=CGI_10025701; scaffold354 WUBlastX LTR_Ngaro 141037 141276 109 + . . scaffold354 GLEAN mRNA 268020 268067 1 + . ID=CGI_10025710; scaffold354 TRF Tandem_Repeat 268020 268067 80 + . . scaffold354 GLEAN mRNA 300056 300082 1 + . ID=CGI_10025712; scaffold354 TRF Tandem_Repeat 300056 300082 54 + . . scaffold354 GLEAN mRNA 311403 311460 1 + . ID=CGI_10025713; scaffold354 TRF Tandem_Repeat 311403 311460 116 + . . scaffold354 GLEAN mRNA 354060 354958 0.999943 + . ID=CGI_10025717; scaffold354 TRF Tandem_Repeat 354060 354958 1604 + . . scaffold354 GLEAN mRNA 397545 397724 0.999212 - . ID=CGI_10025719; scaffold354 WUBlastX LTR_Gypsy 397545 397724 36 - . . scaffold354 GLEAN mRNA 397485 397691 0.999212 - . ID=CGI_10025719; scaffold354 WUBlastX LTR_Gypsy 397485 397691 44 - . . scaffold354 GLEAN mRNA 489194 489385 0.637462 - . ID=CGI_10025720; scaffold354 WUBlastX LINE_L2 489194 489385 45 - . . scaffold354 GLEAN mRNA 489388 490545 0.637462 - . ID=CGI_10025720; scaffold354 WUBlastX LINE_L2 489388 490545 38 - . . scaffold354 GLEAN mRNA 488456 488821 0.637462 - . ID=CGI_10025720; scaffold354 WUBlastX LINE_L2 488456 488821 99 - . . scaffold354 GLEAN mRNA 488456 488923 0.637462 - . ID=CGI_10025720; scaffold354 WUBlastX LINE_L2 488456 488923 76 - . . scaffold354 GLEAN mRNA 489868 490329 0.637462 - . ID=CGI_10025720; scaffold354 WUBlastX LINE_L2 489868 490329 119 - . . scaffold354 GLEAN mRNA 489301 490191 0.637462 - . ID=CGI_10025720; scaffold354 WUBlastX LINE_L2 489301 490191 259 - . . scaffold354 GLEAN mRNA 576184 577255 0.512039 - . ID=CGI_10025727; scaffold354 TRF Tandem_Repeat 576184 577255 1454 + . . scaffold354 GLEAN mRNA 578886 578943 0.512039 - . ID=CGI_10025727; scaffold354 TRF Tandem_Repeat 578886 578943 91 + . . scaffold354 GLEAN mRNA 578886 578935 0.512039 - . ID=CGI_10025727; scaffold354 TRF Tandem_Repeat 578886 578935 64 + . . scaffold354 GLEAN mRNA 578889 578942 0.512039 - . ID=CGI_10025727; scaffold354 TRF Tandem_Repeat 578889 578942 56 + . . scaffold354 GLEAN mRNA 580340 580411 0.512039 - . ID=CGI_10025727; scaffold354 TRF Tandem_Repeat 580340 580411 76 + . . scaffold354 GLEAN mRNA 585788 585829 0.512039 - . ID=CGI_10025727; scaffold354 TRF Tandem_Repeat 585788 585829 84 + . . scaffold354 GLEAN mRNA 589783 589969 0.512039 - . ID=CGI_10025727; scaffold354 TRF Tandem_Repeat 589783 589969 92 + . . scaffold354 GLEAN mRNA 589762 589969 0.512039 - . ID=CGI_10025727; scaffold354 TRF Tandem_Repeat 589762 589969 154 + . . scaffold354 GLEAN mRNA 598757 598805 1 - . ID=CGI_10025728; scaffold354 TRF Tandem_Repeat 598757 598805 71 + . . scaffold354 GLEAN mRNA 617793 617825 0.428175 - . ID=CGI_10025729; scaffold354 TRF Tandem_Repeat 617793 617825 57 + . . scaffold354 GLEAN mRNA 691880 692057 0.175247 + . ID=CGI_10025734; scaffold354 TRF Tandem_Repeat 691880 692057 71 + . . scaffold354 GLEAN mRNA 692714 692749 0.175247 + . ID=CGI_10025734; scaffold354 TRF Tandem_Repeat 692714 692749 72 + . . scaffold354 GLEAN mRNA 692913 692949 0.175247 + . ID=CGI_10025734; scaffold354 TRF Tandem_Repeat 692913 692949 74 + . . scaffold354 GLEAN mRNA 693147 693194 0.175247 + . ID=CGI_10025734; scaffold354 TRF Tandem_Repeat 693147 693194 96 + . . scaffold354 GLEAN mRNA 693306 693358 0.175247 + . ID=CGI_10025734; scaffold354 TRF Tandem_Repeat 693306 693358 97 + . . scaffold354 GLEAN mRNA 694405 694582 0.175247 + . ID=CGI_10025734; scaffold354 TRF Tandem_Repeat 694405 694582 89 + . . scaffold354 GLEAN mRNA 700217 700253 0.175247 + . ID=CGI_10025734; scaffold354 TRF Tandem_Repeat 700217 700253 74 + . . scaffold354 GLEAN mRNA 697802 697942 0.175247 + . ID=CGI_10025734; scaffold354 WUBlastX LINE_RTE-BovB 697802 697942 27 - . . scaffold354 GLEAN mRNA 697920 698126 0.175247 + . ID=CGI_10025734; scaffold354 WUBlastX LINE_RTE-BovB 697920 698126 24 - . . scaffold354 GLEAN mRNA 781515 781547 0.810414 - . ID=CGI_10025736; scaffold354 TRF Tandem_Repeat 781515 781547 66 + . . scaffold354 GLEAN mRNA 781515 781547 0.593391 + . ID=CGI_10025737; scaffold354 TRF Tandem_Repeat 781515 781547 66 + . . scaffold354 GLEAN mRNA 791358 792068 0.742842 - . ID=CGI_10025738; scaffold354 WUBlastX DNA_TcMar-Tc1 791358 792068 313 - . . scaffold354 GLEAN mRNA 792092 792187 0.742842 - . ID=CGI_10025738; scaffold354 WUBlastX DNA_TcMar-Tc1 792092 792187 33 - . . scaffold354 GLEAN mRNA 835953 835980 0.889144 + . ID=CGI_10025744; scaffold354 TRF Tandem_Repeat 835953 835980 56 + . . scaffold354 GLEAN mRNA 1076053 1076104 0.699282 - . ID=CGI_10025747; scaffold354 TRF Tandem_Repeat 1076053 1076104 104 + . . scaffold619 GLEAN mRNA 67137 67286 0.999676 + . ID=CGI_10025753; scaffold619 TRF Tandem_Repeat 67137 67286 255 + . . scaffold619 GLEAN mRNA 90094 90346 0.999676 + . ID=CGI_10025753; scaffold619 TRF Tandem_Repeat 90094 90346 143 + . . scaffold619 GLEAN mRNA 90091 90482 0.999676 + . ID=CGI_10025753; scaffold619 TRF Tandem_Repeat 90091 90482 201 + . . scaffold619 GLEAN mRNA 90230 90477 0.999676 + . ID=CGI_10025753; scaffold619 TRF Tandem_Repeat 90230 90477 203 + . . scaffold619 GLEAN mRNA 91546 91879 0.999676 + . ID=CGI_10025753; scaffold619 TRF Tandem_Repeat 91546 91879 237 + . . scaffold619 GLEAN mRNA 91546 91879 0.999676 + . ID=CGI_10025753; scaffold619 TRF Tandem_Repeat 91546 91879 288 + . . scaffold619 GLEAN mRNA 91582 91881 0.999676 + . ID=CGI_10025753; scaffold619 TRF Tandem_Repeat 91582 91881 224 + . . scaffold619 GLEAN mRNA 91546 91882 0.999676 + . ID=CGI_10025753; scaffold619 TRF Tandem_Repeat 91546 91882 225 + . . scaffold619 GLEAN mRNA 137238 137273 0.859619 - . ID=CGI_10025755; scaffold619 TRF Tandem_Repeat 137238 137273 56 + . . scaffold619 GLEAN mRNA 137234 137275 0.859619 - . ID=CGI_10025755; scaffold619 TRF Tandem_Repeat 137234 137275 59 + . . scaffold619 GLEAN mRNA 143165 143211 0.859619 - . ID=CGI_10025755; scaffold619 TRF Tandem_Repeat 143165 143211 76 + . . scaffold619 GLEAN mRNA 146389 146487 0.859619 - . ID=CGI_10025755; scaffold619 WUBlastX LINE_Jockey 146389 146487 20 - . . scaffold619 GLEAN mRNA 145152 145508 0.859619 - . ID=CGI_10025755; scaffold619 WUBlastX LINE_Jockey 145152 145508 27 - . . scaffold619 GLEAN mRNA 144633 145454 0.859619 - . ID=CGI_10025755; scaffold619 WUBlastX LINE_RTE-X 144633 145454 441 - . . scaffold619 GLEAN mRNA 143876 144619 0.859619 - . ID=CGI_10025755; scaffold619 WUBlastX LINE_RTE-X 143876 144619 183 - . . scaffold619 GLEAN mRNA 146245 146328 0.859619 - . ID=CGI_10025755; scaffold619 WUBlastX LINE_L2 146245 146328 25 - . . scaffold619 GLEAN mRNA 151581 151620 0.859619 - . ID=CGI_10025755; scaffold619 TRF Tandem_Repeat 151581 151620 62 + . . scaffold619 GLEAN mRNA 161068 161103 0.859619 - . ID=CGI_10025755; scaffold619 TRF Tandem_Repeat 161068 161103 72 + . . scaffold619 GLEAN mRNA 206009 206066 1 - . ID=CGI_10025758; scaffold619 TRF Tandem_Repeat 206009 206066 116 + . . scaffold619 GLEAN mRNA 227082 227109 0.999676 + . ID=CGI_10025760; scaffold619 TRF Tandem_Repeat 227082 227109 56 + . . scaffold619 GLEAN mRNA 276943 277008 0.987208 - . ID=CGI_10025763; scaffold619 TRF Tandem_Repeat 276943 277008 89 + . . scaffold619 GLEAN mRNA 280818 280871 0.987208 - . ID=CGI_10025763; scaffold619 TRF Tandem_Repeat 280818 280871 108 + . . scaffold619 GLEAN mRNA 277178 278694 0.987208 - . ID=CGI_10025763; scaffold619 TRF Tandem_Repeat 277178 278694 2153 + . . scaffold619 GLEAN mRNA 277178 278710 0.987208 - . ID=CGI_10025763; scaffold619 TRF Tandem_Repeat 277178 278710 2194 + . . scaffold619 GLEAN mRNA 310714 310903 0.999671 + . ID=CGI_10025765; scaffold619 TRF Tandem_Repeat 310714 310903 186 + . . scaffold619 GLEAN mRNA 338555 338593 1 + . ID=CGI_10025769; scaffold619 TRF Tandem_Repeat 338555 338593 78 + . . scaffold619 GLEAN mRNA 342269 342299 1 + . ID=CGI_10025769; scaffold619 TRF Tandem_Repeat 342269 342299 62 + . . scaffold619 GLEAN mRNA 350338 350440 1 + . ID=CGI_10025769; scaffold619 TRF Tandem_Repeat 350338 350440 188 + . . scaffold619 GLEAN mRNA 395315 395345 0.999624 + . ID=CGI_10025770; scaffold619 TRF Tandem_Repeat 395315 395345 62 + . . scaffold619 GLEAN mRNA 401387 401429 0.999624 + . ID=CGI_10025770; scaffold619 TRF Tandem_Repeat 401387 401429 50 + . . scaffold619 GLEAN mRNA 420440 420507 1 + . ID=CGI_10025771; scaffold619 TRF Tandem_Repeat 420440 420507 136 + . . scaffold619 GLEAN mRNA 422285 422394 1 + . ID=CGI_10025771; scaffold619 TRF Tandem_Repeat 422285 422394 211 + . . scaffold619 GLEAN mRNA 482748 482845 0.999047 + . ID=CGI_10025773; scaffold619 TRF Tandem_Repeat 482748 482845 81 + . . scaffold619 GLEAN mRNA 486234 486398 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX DNA_hAT-Hobo 486234 486398 68 - . . scaffold619 GLEAN mRNA 487683 487751 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX DNA_hAT-Ac 487683 487751 24 - . . scaffold619 GLEAN mRNA 484218 484787 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX LTR_Ngaro 484218 484787 81 - . . scaffold619 GLEAN mRNA 481715 482002 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX LTR_Ngaro 481715 482002 56 - . . scaffold619 GLEAN mRNA 484793 485029 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX LTR_Ngaro 484793 485029 156 - . . scaffold619 GLEAN mRNA 483292 483714 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX LTR_Ngaro 483292 483714 69 - . . scaffold619 GLEAN mRNA 487930 488070 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX DNA_hAT-Ac 487930 488070 27 - . . scaffold619 GLEAN mRNA 484356 484790 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX LTR_Ngaro 484356 484790 84 - . . scaffold619 GLEAN mRNA 487963 488073 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX DNA_hAT-Ac 487963 488073 53 - . . scaffold619 GLEAN mRNA 483385 483930 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX LTR_Ngaro 483385 483930 95 - . . scaffold619 GLEAN mRNA 487161 487574 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX DNA_hAT-Tip100 487161 487574 71 - . . scaffold619 GLEAN mRNA 485379 485759 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX LTR_Ngaro 485379 485759 95 - . . scaffold619 GLEAN mRNA 486264 487511 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX DNA_hAT-Ac 486264 487511 257 - . . scaffold619 GLEAN mRNA 487615 487692 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX DNA_hAT-Ac 487615 487692 39 - . . scaffold619 GLEAN mRNA 488220 488606 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX DNA_hAT-Ac 488220 488606 87 - . . scaffold619 GLEAN mRNA 485316 485726 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX LTR_Ngaro 485316 485726 50 - . . scaffold619 GLEAN mRNA 483837 483980 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX LTR_Ngaro 483837 483980 47 - . . scaffold619 GLEAN mRNA 483858 484256 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX LTR_Ngaro 483858 484256 22 - . . scaffold619 GLEAN mRNA 487692 487925 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX DNA_hAT-Ac 487692 487925 20 - . . scaffold619 GLEAN mRNA 492042 492089 0.999047 + . ID=CGI_10025773; scaffold619 TRF Tandem_Repeat 492042 492089 51 + . . scaffold619 GLEAN mRNA 492047 492096 0.999047 + . ID=CGI_10025773; scaffold619 TRF Tandem_Repeat 492047 492096 73 + . . scaffold619 GLEAN mRNA 492051 492096 0.999047 + . ID=CGI_10025773; scaffold619 TRF Tandem_Repeat 492051 492096 56 + . . scaffold619 GLEAN mRNA 492120 493110 0.999047 + . ID=CGI_10025773; scaffold619 TRF Tandem_Repeat 492120 493110 1486 + . . scaffold619 GLEAN mRNA 563624 563821 1 - . ID=CGI_10025775; scaffold619 WUBlastX DNA_IS4EU 563624 564013 72 - . . scaffold619 GLEAN mRNA 717731 717973 0.701383 + . ID=CGI_10025782; scaffold619 TRF Tandem_Repeat 717731 717973 387 + . . scaffold619 GLEAN mRNA 721080 721135 0.701383 + . ID=CGI_10025782; scaffold619 TRF Tandem_Repeat 721080 721135 112 + . . scaffold619 GLEAN mRNA 745837 747360 1 + . ID=CGI_10025783; scaffold619 WUBlastX DNA_hAT 745837 747360 277 + . . scaffold619 GLEAN mRNA 784129 784174 0.999676 - . ID=CGI_10025785; scaffold619 TRF Tandem_Repeat 784129 784174 74 + . . scaffold619 GLEAN mRNA 778918 779232 0.999676 - . ID=CGI_10025785; scaffold619 WUBlastX LINE_RTE-X 778918 779232 154 - . . scaffold619 GLEAN mRNA 779265 779498 0.999676 - . ID=CGI_10025785; scaffold619 WUBlastX LINE_RTE-X 779265 779498 42 - . . scaffold619 GLEAN mRNA 778840 779217 0.999676 - . ID=CGI_10025785; scaffold619 WUBlastX LINE_RTE-X 778840 779217 118 - . . scaffold619 GLEAN mRNA 784129 784174 0.999994 + . ID=CGI_10025786; scaffold619 TRF Tandem_Repeat 784129 784174 74 + . . scaffold619 GLEAN mRNA 861357 861435 1 - . ID=CGI_10025788; scaffold619 TRF Tandem_Repeat 861357 861435 158 + . . scaffold619 GLEAN mRNA 876091 876391 0.920529 - . ID=CGI_10025790; scaffold619 TRF Tandem_Repeat 876091 876391 409 + . . scaffold619 GLEAN mRNA 876901 877496 0.920529 - . ID=CGI_10025790; scaffold619 TRF Tandem_Repeat 876901 877496 704 + . . scaffold619 GLEAN mRNA 874958 875068 0.920529 - . ID=CGI_10025790; scaffold619 WUBlastX DNA_MuDR 874958 875068 32 - . . scaffold619 GLEAN mRNA 874895 875068 0.920529 - . ID=CGI_10025790; scaffold619 WUBlastX DNA_MuDR 874895 875068 20 - . . scaffold619 GLEAN mRNA 875302 875658 0.920529 - . ID=CGI_10025790; scaffold619 WUBlastX DNA_MuDR 875302 875658 153 - . . scaffold619 GLEAN mRNA 875957 876022 0.920529 - . ID=CGI_10025790; scaffold619 WUBlastX DNA_MuDR 875957 876022 20 - . . scaffold619 GLEAN mRNA 956980 957120 0.544338 - . ID=CGI_10025794; scaffold619 TRF Tandem_Repeat 956980 957120 89 + . . scaffold619 GLEAN mRNA 950997 952025 0.544338 - . ID=CGI_10025794; scaffold619 WUBlastX DNA_hAT-hATw 950997 952025 43 + . . scaffold619 GLEAN mRNA 952227 953405 0.544338 - . ID=CGI_10025794; scaffold619 WUBlastX DNA_hAT-hATw 952227 953405 254 + . . scaffold619 GLEAN mRNA 951909 953348 0.544338 - . ID=CGI_10025794; scaffold619 WUBlastX DNA_hAT-hATw 951909 953348 213 + . . scaffold619 GLEAN mRNA 951324 952010 0.544338 - . ID=CGI_10025794; scaffold619 WUBlastX DNA_hAT-hATw 951324 952010 106 + . . scaffold619 GLEAN mRNA 992404 992431 0.937953 + . ID=CGI_10025795; scaffold619 TRF Tandem_Repeat 992404 992431 56 + . . scaffold619 GLEAN mRNA 1001354 1001534 0.937953 + . ID=CGI_10025795; scaffold619 TRF Tandem_Repeat 1001354 1001534 202 + . . scaffold619 GLEAN mRNA 1048060 1048311 0.495318 - . ID=CGI_10025798; scaffold619 WUBlastX LTR_Gypsy 1048060 1048311 24 - . . scaffold619 GLEAN mRNA 1072833 1072991 0.856709 - . ID=CGI_10025801; scaffold619 WUBlastX LTR_Gypsy 1072833 1072991 23 - . . scaffold619 GLEAN mRNA 1071479 1071661 0.856709 - . ID=CGI_10025801; scaffold619 WUBlastX LTR_Gypsy 1071479 1071661 33 - . . scaffold619 GLEAN mRNA 1083784 1083814 0.999676 - . ID=CGI_10025803; scaffold619 TRF Tandem_Repeat 1083784 1083814 62 + . . scaffold619 GLEAN mRNA 1083472 1083654 0.999676 - . ID=CGI_10025803; scaffold619 WUBlastX LTR_Gypsy 1083472 1083654 39 - . . scaffold1583 GLEAN mRNA 1647 1714 0.647663 - . ID=CGI_10025805; scaffold1583 TRF Tandem_Repeat 1647 1714 104 + . . scaffold1583 GLEAN mRNA 28218 28313 0.647663 - . ID=CGI_10025805; scaffold1583 TRF Tandem_Repeat 28218 28313 76 + . . scaffold1583 GLEAN mRNA 30670 30702 0.647663 - . ID=CGI_10025805; scaffold1583 TRF Tandem_Repeat 30670 30702 57 + . . scaffold1583 GLEAN mRNA 31398 31552 0.647663 - . ID=CGI_10025805; scaffold1583 TRF Tandem_Repeat 31398 31552 67 + . . scaffold1583 GLEAN mRNA 31462 31608 0.647663 - . ID=CGI_10025805; scaffold1583 TRF Tandem_Repeat 31462 31608 73 + . . scaffold1583 GLEAN mRNA 40104 40167 0.647663 - . ID=CGI_10025805; scaffold1583 TRF Tandem_Repeat 40104 40167 56 + . . scaffold1583 GLEAN mRNA 40128 40159 0.647663 - . ID=CGI_10025805; scaffold1583 TRF Tandem_Repeat 40128 40159 55 + . . scaffold1583 GLEAN mRNA 40112 40168 0.647663 - . ID=CGI_10025805; scaffold1583 TRF Tandem_Repeat 40112 40168 69 + . . scaffold1583 GLEAN mRNA 57183 57317 0.652119 + . ID=CGI_10025806; scaffold1583 TRF Tandem_Repeat 57183 57317 56 + . . scaffold1583 GLEAN mRNA 65608 66023 0.652119 + . ID=CGI_10025806; scaffold1583 TRF Tandem_Repeat 65608 66023 427 + . . scaffold1583 GLEAN mRNA 65602 66024 0.652119 + . ID=CGI_10025806; scaffold1583 TRF Tandem_Repeat 65602 66024 490 + . . scaffold1583 GLEAN mRNA 67210 67297 0.652119 + . ID=CGI_10025806; scaffold1583 TRF Tandem_Repeat 67210 67297 97 + . . scaffold1583 GLEAN mRNA 67299 67424 0.652119 + . ID=CGI_10025806; scaffold1583 TRF Tandem_Repeat 67299 67424 70 + . . scaffold1583 GLEAN mRNA 67316 67536 0.652119 + . ID=CGI_10025806; scaffold1583 TRF Tandem_Repeat 67316 67536 158 + . . scaffold1583 GLEAN mRNA 114618 114656 0.999375 - . ID=CGI_10025809; scaffold1583 TRF Tandem_Repeat 114618 114656 78 + . . scaffold1583 GLEAN mRNA 136504 136743 1 - . ID=CGI_10025812; scaffold1583 TRF Tandem_Repeat 136504 136743 191 + . . scaffold1583 GLEAN mRNA 137571 137656 1 - . ID=CGI_10025812; scaffold1583 TRF Tandem_Repeat 137571 137656 70 + . . scaffold1583 GLEAN mRNA 137878 137920 1 - . ID=CGI_10025812; scaffold1583 TRF Tandem_Repeat 137878 137920 86 + . . scaffold1583 GLEAN mRNA 138251 138300 1 - . ID=CGI_10025812; scaffold1583 TRF Tandem_Repeat 138251 138300 82 + . . scaffold1583 GLEAN mRNA 181700 181934 0.999949 + . ID=CGI_10025815; scaffold1583 TRF Tandem_Repeat 181700 181934 229 + . . scaffold1583 GLEAN mRNA 200096 200144 0.998725 + . ID=CGI_10025817; scaffold1583 TRF Tandem_Repeat 200096 200144 98 + . . scaffold1583 GLEAN mRNA 200632 200965 0.998725 + . ID=CGI_10025817; scaffold1583 TRF Tandem_Repeat 200632 200965 297 + . . scaffold1583 GLEAN mRNA 304774 304838 0.82008 - . ID=CGI_10025823; scaffold1583 TRF Tandem_Repeat 304774 304838 130 + . . scaffold1583 GLEAN mRNA 304901 304931 0.82008 - . ID=CGI_10025823; scaffold1583 TRF Tandem_Repeat 304901 304931 62 + . . scaffold1583 GLEAN mRNA 324351 324659 0.82008 - . ID=CGI_10025823; scaffold1583 WUBlastX LINE_RTE-X 324351 324659 138 - . . scaffold1583 GLEAN mRNA 323785 324345 0.82008 - . ID=CGI_10025823; scaffold1583 WUBlastX LINE_RTE-X 323785 324345 144 - . . scaffold1583 GLEAN mRNA 323387 323725 0.82008 - . ID=CGI_10025823; scaffold1583 WUBlastX LINE_RTE-X 323387 323725 62 - . . scaffold1583 GLEAN mRNA 323902 324345 0.82008 - . ID=CGI_10025823; scaffold1583 WUBlastX LINE_RTE-X 323902 324345 154 - . . scaffold1583 GLEAN mRNA 323471 323725 0.82008 - . ID=CGI_10025823; scaffold1583 WUBlastX LINE_RTE-X 323471 323725 84 - . . scaffold1583 GLEAN mRNA 324408 324704 0.82008 - . ID=CGI_10025823; scaffold1583 WUBlastX LINE_Proto2 324408 324704 42 - . . scaffold1583 GLEAN mRNA 330557 330670 0.998703 - . ID=CGI_10025825; scaffold1583 WUBlastX LINE_RTE-X 330557 330670 50 + . . scaffold1583 GLEAN mRNA 330184 330501 0.998703 - . ID=CGI_10025825; scaffold1583 WUBlastX LINE_RTE-X 330184 330501 126 + . . scaffold1583 GLEAN mRNA 330196 330585 0.998703 - . ID=CGI_10025825; scaffold1583 WUBlastX LINE_RTE-X 330196 330585 99 + . . scaffold1583 GLEAN mRNA 330696 331175 0.998703 - . ID=CGI_10025825; scaffold1583 WUBlastX LINE_RTE-X 330696 331175 86 + . . scaffold1583 GLEAN mRNA 381309 381352 0.999981 + . ID=CGI_10025828; scaffold1583 TRF Tandem_Repeat 381309 381352 88 + . . scaffold1583 GLEAN mRNA 390301 390341 0.999981 + . ID=CGI_10025828; scaffold1583 TRF Tandem_Repeat 390301 390341 82 + . . scaffold1583 GLEAN mRNA 390435 390462 0.999981 + . ID=CGI_10025828; scaffold1583 TRF Tandem_Repeat 390435 390462 56 + . . scaffold1583 GLEAN mRNA 604916 605824 0.51807 - . ID=CGI_10025834; scaffold1583 TRF Tandem_Repeat 604916 605824 717 + . . scaffold1583 GLEAN mRNA 622306 622363 0.999866 - . ID=CGI_10025835; scaffold1583 TRF Tandem_Repeat 622306 622363 102 + . . scaffold1583 GLEAN mRNA 623511 623679 0.999866 - . ID=CGI_10025835; scaffold1583 TRF Tandem_Repeat 623511 623679 248 + . . scaffold1583 GLEAN mRNA 624431 624584 0.999866 - . ID=CGI_10025835; scaffold1583 TRF Tandem_Repeat 624431 624584 254 + . . scaffold1583 GLEAN mRNA 624673 624726 0.999866 - . ID=CGI_10025835; scaffold1583 TRF Tandem_Repeat 624673 624726 54 + . . scaffold1583 GLEAN mRNA 626470 626919 0.999866 - . ID=CGI_10025835; scaffold1583 TRF Tandem_Repeat 626470 626919 408 + . . scaffold1583 GLEAN mRNA 626874 626933 0.999866 - . ID=CGI_10025835; scaffold1583 TRF Tandem_Repeat 626874 626933 59 + . . scaffold1583 GLEAN mRNA 640267 641200 0.999995 + . ID=CGI_10025836; scaffold1583 TRF Tandem_Repeat 640267 641200 1595 + . . scaffold1583 GLEAN mRNA 642336 642485 0.999995 + . ID=CGI_10025836; scaffold1583 TRF Tandem_Repeat 642336 642485 221 + . . scaffold1583 GLEAN mRNA 643806 643831 0.999995 + . ID=CGI_10025836; scaffold1583 TRF Tandem_Repeat 643806 643831 52 + . . scaffold1583 GLEAN mRNA 651410 651681 0.999995 + . ID=CGI_10025836; scaffold1583 TRF Tandem_Repeat 651410 651681 332 + . . scaffold1583 GLEAN mRNA 652818 653059 0.999995 + . ID=CGI_10025836; scaffold1583 TRF Tandem_Repeat 652818 653059 413 + . . scaffold1583 GLEAN mRNA 657719 657806 0.999995 + . ID=CGI_10025836; scaffold1583 TRF Tandem_Repeat 657719 657806 114 + . . scaffold1583 GLEAN mRNA 659453 659540 0.999995 + . ID=CGI_10025836; scaffold1583 TRF Tandem_Repeat 659453 659540 114 + . . scaffold1583 GLEAN mRNA 690851 691258 1 - . ID=CGI_10025837; scaffold1583 TRF Tandem_Repeat 690851 691258 534 + . . scaffold1583 GLEAN mRNA 691255 691548 1 - . ID=CGI_10025837; scaffold1583 TRF Tandem_Repeat 691255 691548 473 + . . scaffold1583 GLEAN mRNA 691860 692283 1 - . ID=CGI_10025837; scaffold1583 TRF Tandem_Repeat 691860 692283 508 + . . scaffold1583 GLEAN mRNA 694120 694689 1 - . ID=CGI_10025837; scaffold1583 TRF Tandem_Repeat 694120 694689 732 + . . scaffold1583 GLEAN mRNA 699074 699117 1 - . ID=CGI_10025837; scaffold1583 TRF Tandem_Repeat 699074 699117 88 + . . scaffold1583 GLEAN mRNA 702091 702144 1 + . ID=CGI_10025838; scaffold1583 TRF Tandem_Repeat 702091 702144 108 + . . scaffold1583 GLEAN mRNA 704215 704308 1 + . ID=CGI_10025838; scaffold1583 TRF Tandem_Repeat 704215 704308 89 + . . scaffold1583 GLEAN mRNA 705090 705210 1 + . ID=CGI_10025838; scaffold1583 TRF Tandem_Repeat 705090 705210 127 + . . scaffold1583 GLEAN mRNA 705265 705403 1 + . ID=CGI_10025838; scaffold1583 TRF Tandem_Repeat 705265 705403 127 + . . scaffold1583 GLEAN mRNA 705480 705571 1 + . ID=CGI_10025838; scaffold1583 TRF Tandem_Repeat 705480 705571 96 + . . scaffold1583 GLEAN mRNA 707771 707826 1 + . ID=CGI_10025838; scaffold1583 TRF Tandem_Repeat 707771 707826 103 + . . scaffold1583 GLEAN mRNA 708291 708329 1 + . ID=CGI_10025838; scaffold1583 TRF Tandem_Repeat 708291 708329 78 + . . scaffold1583 GLEAN mRNA 716368 716477 0.999675 - . ID=CGI_10025839; scaffold1583 TRF Tandem_Repeat 716368 716477 193 + . . scaffold1583 GLEAN mRNA 718775 718825 0.999675 - . ID=CGI_10025839; scaffold1583 TRF Tandem_Repeat 718775 718825 102 + . . scaffold1583 GLEAN mRNA 722696 722735 0.999675 - . ID=CGI_10025839; scaffold1583 TRF Tandem_Repeat 722696 722735 80 + . . scaffold1583 GLEAN mRNA 758279 758312 0.512265 - . ID=CGI_10025840; scaffold1583 TRF Tandem_Repeat 758279 758312 59 + . . scaffold1583 GLEAN mRNA 764151 764196 0.512265 - . ID=CGI_10025840; scaffold1583 TRF Tandem_Repeat 764151 764196 92 + . . scaffold1583 GLEAN mRNA 756984 757121 0.512265 - . ID=CGI_10025840; scaffold1583 WUBlastX LTR_Gypsy 756984 757121 26 - . . scaffold1583 GLEAN mRNA 756798 756862 0.512265 - . ID=CGI_10025840; scaffold1583 WUBlastX DNA_Maverick 755753 756862 593 - . . scaffold1583 GLEAN mRNA 757569 758177 0.512265 - . ID=CGI_10025840; scaffold1583 WUBlastX DNA_Maverick 757569 758177 406 - . . scaffold1583 GLEAN mRNA 759064 759594 0.512265 - . ID=CGI_10025840; scaffold1583 WUBlastX DNA_Maverick 759064 759594 289 - . . scaffold1583 GLEAN mRNA 760038 760841 0.512265 - . ID=CGI_10025840; scaffold1583 WUBlastX DNA_Maverick 760038 760841 299 - . . scaffold1583 GLEAN mRNA 759061 759990 0.512265 - . ID=CGI_10025840; scaffold1583 WUBlastX DNA_Maverick 759061 759990 266 - . . scaffold1583 GLEAN mRNA 822207 822347 0.999365 - . ID=CGI_10025843; scaffold1583 WUBlastX LTR_Gypsy 821745 822347 64 - . . scaffold1583 GLEAN mRNA 822207 822614 0.999365 - . ID=CGI_10025843; scaffold1583 WUBlastX LTR_Gypsy 821820 822686 38 - . . scaffold1583 GLEAN mRNA 822207 822452 0.999365 - . ID=CGI_10025843; scaffold1583 WUBlastX LTR_Gypsy 821799 822452 41 - . . scaffold1583 GLEAN mRNA 822649 822686 0.593542 - . ID=CGI_10025844; scaffold1583 WUBlastX LTR_Gypsy 821820 822686 38 - . . scaffold1583 GLEAN mRNA 857862 858272 0.857655 - . ID=CGI_10025847; scaffold1583 TRF Tandem_Repeat 857862 858272 130 + . . scaffold1583 GLEAN mRNA 908525 908578 1 - . ID=CGI_10025853; scaffold1583 TRF Tandem_Repeat 908525 908578 92 + . . scaffold1583 GLEAN mRNA 970778 971566 0.999949 + . ID=CGI_10025857; scaffold1583 TRF Tandem_Repeat 970778 971566 1048 + . . scaffold1583 GLEAN mRNA 970771 971566 0.999949 + . ID=CGI_10025857; scaffold1583 TRF Tandem_Repeat 970771 971566 1077 + . . scaffold1583 GLEAN mRNA 970049 970102 0.999949 + . ID=CGI_10025857; scaffold1583 WUBlastX LINE_RTE-X 970049 970102 33 + . . scaffold1583 GLEAN mRNA 1081933 1082429 0.937847 - . ID=CGI_10025859; scaffold1583 TRF Tandem_Repeat 1081933 1082429 459 + . . scaffold1583 GLEAN mRNA 1087260 1087295 0.937847 - . ID=CGI_10025859; scaffold1583 TRF Tandem_Repeat 1087260 1087295 63 + . . scaffold1583 GLEAN mRNA 1089802 1090120 0.937847 - . ID=CGI_10025859; scaffold1583 TRF Tandem_Repeat 1089802 1090120 525 + . . scaffold1583 GLEAN mRNA 1094425 1094567 0.937847 - . ID=CGI_10025859; scaffold1583 TRF Tandem_Repeat 1094425 1094567 234 + . . scaffold733 GLEAN mRNA 10585 10622 0.994156 - . ID=CGI_10025861; scaffold733 TRF Tandem_Repeat 10585 10622 76 + . . scaffold733 GLEAN mRNA 10622 10676 0.994156 - . ID=CGI_10025861; scaffold733 TRF Tandem_Repeat 10622 10676 110 + . . scaffold733 GLEAN mRNA 45213 45954 0.939016 - . ID=CGI_10025863; scaffold733 TRF Tandem_Repeat 45213 45954 796 + . . scaffold733 GLEAN mRNA 40894 40989 0.939016 - . ID=CGI_10025863; scaffold733 WUBlastX LTR_Copia 40894 40989 26 + . . scaffold733 GLEAN mRNA 38891 39604 0.939016 - . ID=CGI_10025863; scaffold733 WUBlastX LTR_Gypsy 38891 39604 119 + . . scaffold733 GLEAN mRNA 39077 40333 0.939016 - . ID=CGI_10025863; scaffold733 WUBlastX LTR_Gypsy 39077 40333 1145 + . . scaffold733 GLEAN mRNA 49045 49158 0.939016 - . ID=CGI_10025863; scaffold733 WUBlastX DNA_Maverick 49045 49197 60 - . . scaffold733 GLEAN mRNA 217495 217659 0.792042 - . ID=CGI_10025867; scaffold733 WUBlastX DNA_TcMar-m44 217495 217659 29 - . . scaffold733 GLEAN mRNA 222494 222658 0.792042 - . ID=CGI_10025867; scaffold733 WUBlastX DNA_TcMar-m44 222494 222658 29 - . . scaffold733 GLEAN mRNA 216318 217247 0.792042 - . ID=CGI_10025867; scaffold733 WUBlastX DNA_TcMar-m44 216318 217247 583 - . . scaffold733 GLEAN mRNA 221317 222246 0.792042 - . ID=CGI_10025867; scaffold733 WUBlastX DNA_TcMar-m44 221317 222246 583 - . . scaffold733 GLEAN mRNA 227627 228132 1 + . ID=CGI_10025868; scaffold733 TRF Tandem_Repeat 227627 228132 940 + . . scaffold733 GLEAN mRNA 254177 254496 0.998744 + . ID=CGI_10025870; scaffold733 TRF Tandem_Repeat 254177 254496 256 + . . scaffold733 GLEAN mRNA 254139 254583 0.998744 + . ID=CGI_10025870; scaffold733 TRF Tandem_Repeat 254139 254583 748 + . . scaffold733 GLEAN mRNA 258391 258590 0.998744 + . ID=CGI_10025870; scaffold733 TRF Tandem_Repeat 258391 258590 348 + . . scaffold733 GLEAN mRNA 268580 269611 0.998744 + . ID=CGI_10025870; scaffold733 WUBlastX DNA_TcMar-Tc1 268580 269611 374 - . . scaffold733 GLEAN mRNA 298769 299120 0.439979 + . ID=CGI_10025872; scaffold733 TRF Tandem_Repeat 298769 299120 325 + . . scaffold733 GLEAN mRNA 301908 301957 0.439979 + . ID=CGI_10025872; scaffold733 TRF Tandem_Repeat 301908 301957 93 + . . scaffold733 GLEAN mRNA 303750 303998 0.439979 + . ID=CGI_10025872; scaffold733 TRF Tandem_Repeat 303750 303998 214 + . . scaffold733 GLEAN mRNA 315238 315275 0.439979 + . ID=CGI_10025872; scaffold733 TRF Tandem_Repeat 315238 315275 51 + . . scaffold733 GLEAN mRNA 360805 360845 0.999672 + . ID=CGI_10025873; scaffold733 TRF Tandem_Repeat 360805 360845 73 + . . scaffold733 GLEAN mRNA 360386 360675 0.999672 + . ID=CGI_10025873; scaffold733 TRF Tandem_Repeat 360386 360675 303 + . . scaffold733 GLEAN mRNA 375766 375822 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 375766 375822 30 + . . scaffold733 GLEAN mRNA 375970 376062 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 375970 376062 26 + . . scaffold733 GLEAN mRNA 374869 375153 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 374869 375153 132 + . . scaffold733 GLEAN mRNA 375742 375828 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 375742 375828 23 + . . scaffold733 GLEAN mRNA 375289 375513 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 375289 375513 117 + . . scaffold733 GLEAN mRNA 376261 376509 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 376261 376509 78 + . . scaffold733 GLEAN mRNA 378913 378938 0.843432 + . ID=CGI_10025875; scaffold733 TRF Tandem_Repeat 378913 378938 52 + . . scaffold733 GLEAN mRNA 385361 385418 0.843432 + . ID=CGI_10025875; scaffold733 TRF Tandem_Repeat 385361 385418 73 + . . scaffold733 GLEAN mRNA 385367 385418 0.843432 + . ID=CGI_10025875; scaffold733 TRF Tandem_Repeat 385367 385418 86 + . . scaffold733 GLEAN mRNA 377317 377553 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 377317 377553 103 + . . scaffold733 GLEAN mRNA 376842 377078 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 376842 377078 40 + . . scaffold733 GLEAN mRNA 377953 378198 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 377953 378198 145 - . . scaffold733 GLEAN mRNA 401482 402304 0.843432 + . ID=CGI_10025875; scaffold733 TRF Tandem_Repeat 401482 402304 875 + . . scaffold733 GLEAN mRNA 410395 410741 0.684241 + . ID=CGI_10025876; scaffold733 TRF Tandem_Repeat 410395 410741 586 + . . scaffold733 GLEAN mRNA 410425 410852 0.684241 + . ID=CGI_10025876; scaffold733 TRF Tandem_Repeat 410425 410852 215 + . . scaffold733 GLEAN mRNA 411456 411501 0.684241 + . ID=CGI_10025876; scaffold733 TRF Tandem_Repeat 411456 411501 92 + . . scaffold733 GLEAN mRNA 417970 418017 0.684241 + . ID=CGI_10025876; scaffold733 TRF Tandem_Repeat 417970 418017 82 + . . scaffold733 GLEAN mRNA 424204 424475 0.684241 + . ID=CGI_10025876; scaffold733 TRF Tandem_Repeat 424204 424475 237 + . . scaffold733 GLEAN mRNA 413087 413638 0.684241 + . ID=CGI_10025876; scaffold733 WUBlastX LINE_L2 413087 413638 224 - . . scaffold733 GLEAN mRNA 413102 413905 0.684241 + . ID=CGI_10025876; scaffold733 WUBlastX LINE_L2 413102 413905 164 - . . scaffold733 GLEAN mRNA 433085 433149 0.684241 + . ID=CGI_10025876; scaffold733 TRF Tandem_Repeat 433085 433149 80 + . . scaffold733 GLEAN mRNA 436963 437012 0.684241 + . ID=CGI_10025876; scaffold733 TRF Tandem_Repeat 436963 437012 66 + . . scaffold733 GLEAN mRNA 431961 432005 0.684241 + . ID=CGI_10025876; scaffold733 WUBlastX LINE_DRE 431961 432005 23 + . . scaffold733 GLEAN mRNA 471642 472079 0.684241 + . ID=CGI_10025876; scaffold733 WUBlastX LINE_Penelope 471642 472079 30 + . . scaffold733 GLEAN mRNA 485085 485126 0.684241 + . ID=CGI_10025876; scaffold733 TRF Tandem_Repeat 485085 485126 84 + . . scaffold733 GLEAN mRNA 486286 486314 0.684241 + . ID=CGI_10025876; scaffold733 TRF Tandem_Repeat 486286 486314 58 + . . scaffold733 GLEAN mRNA 521481 521528 0.684241 + . ID=CGI_10025876; scaffold733 TRF Tandem_Repeat 521481 521528 96 + . . scaffold733 GLEAN mRNA 522157 522211 0.684241 + . ID=CGI_10025876; scaffold733 TRF Tandem_Repeat 522157 522211 101 + . . scaffold733 GLEAN mRNA 513063 513179 0.684241 + . ID=CGI_10025876; scaffold733 WUBlastX LINE_Penelope 513063 513179 28 - . . scaffold733 GLEAN mRNA 513415 513837 0.684241 + . ID=CGI_10025876; scaffold733 WUBlastX LINE_Penelope 513415 513837 127 - . . scaffold733 GLEAN mRNA 513412 513699 0.684241 + . ID=CGI_10025876; scaffold733 WUBlastX LINE_Penelope 513412 513699 130 - . . scaffold733 GLEAN mRNA 513170 513403 0.684241 + . ID=CGI_10025876; scaffold733 WUBlastX LINE_Penelope 513170 513403 32 - . . scaffold733 GLEAN mRNA 531190 531384 0.684241 + . ID=CGI_10025876; scaffold733 TRF Tandem_Repeat 531190 531384 336 + . . scaffold733 GLEAN mRNA 536129 536873 0.684241 + . ID=CGI_10025876; scaffold733 TRF Tandem_Repeat 536129 536873 653 + . . scaffold733 GLEAN mRNA 554479 554555 0.999658 + . ID=CGI_10025877; scaffold733 TRF Tandem_Repeat 554479 554555 154 + . . scaffold733 GLEAN mRNA 567023 567114 0.999536 + . ID=CGI_10025878; scaffold733 TRF Tandem_Repeat 567023 567114 168 + . . scaffold733 GLEAN mRNA 641404 641690 0.357557 - . ID=CGI_10025882; scaffold733 TRF Tandem_Repeat 641404 641690 337 + . . scaffold733 GLEAN mRNA 688944 690016 0.755238 + . ID=CGI_10025885; scaffold733 TRF Tandem_Repeat 688944 690016 1637 + . . scaffold733 GLEAN mRNA 688944 690016 0.755238 + . ID=CGI_10025885; scaffold733 TRF Tandem_Repeat 688944 690016 1617 + . . scaffold733 GLEAN mRNA 688944 690016 0.755238 + . ID=CGI_10025885; scaffold733 TRF Tandem_Repeat 688944 690016 1622 + . . scaffold733 GLEAN mRNA 692101 692383 0.755238 + . ID=CGI_10025885; scaffold733 TRF Tandem_Repeat 692101 692383 125 + . . scaffold733 GLEAN mRNA 699642 699758 0.755238 + . ID=CGI_10025885; scaffold733 TRF Tandem_Repeat 699642 699758 114 + . . scaffold733 GLEAN mRNA 702376 702681 0.755238 + . ID=CGI_10025885; scaffold733 TRF Tandem_Repeat 702376 702681 414 + . . scaffold733 GLEAN mRNA 740978 741044 0.888474 + . ID=CGI_10025887; scaffold733 TRF Tandem_Repeat 740978 741044 134 + . . scaffold733 GLEAN mRNA 757588 757624 0.359192 + . ID=CGI_10025888; scaffold733 TRF Tandem_Repeat 757588 757624 65 + . . scaffold733 GLEAN mRNA 768168 768242 0.999999 + . ID=CGI_10025889; scaffold733 TRF Tandem_Repeat 768168 768242 55 + . . scaffold733 GLEAN mRNA 805842 805891 0.680521 + . ID=CGI_10025891; scaffold733 TRF Tandem_Repeat 805842 805891 100 + . . scaffold733 GLEAN mRNA 817908 818206 0.680521 + . ID=CGI_10025891; scaffold733 TRF Tandem_Repeat 817908 818206 463 + . . scaffold733 GLEAN mRNA 822940 822980 0.680521 + . ID=CGI_10025891; scaffold733 TRF Tandem_Repeat 822940 822980 73 + . . scaffold733 GLEAN mRNA 823667 823734 0.680521 + . ID=CGI_10025891; scaffold733 TRF Tandem_Repeat 823667 823734 136 + . . scaffold733 GLEAN mRNA 882271 882313 0.998838 + . ID=CGI_10025893; scaffold733 TRF Tandem_Repeat 882271 882313 86 + . . scaffold733 GLEAN mRNA 890222 891014 0.998838 + . ID=CGI_10025893; scaffold733 TRF Tandem_Repeat 890222 891014 1146 + . . scaffold733 GLEAN mRNA 892291 892952 0.998838 + . ID=CGI_10025893; scaffold733 TRF Tandem_Repeat 892291 892952 909 + . . scaffold733 GLEAN mRNA 892957 892991 0.998838 + . ID=CGI_10025893; scaffold733 TRF Tandem_Repeat 892957 892991 52 + . . scaffold733 GLEAN mRNA 888740 889537 0.998838 + . ID=CGI_10025893; scaffold733 WUBlastX LINE_L1-Tx1 888740 889537 50 - . . scaffold733 GLEAN mRNA 889816 890124 0.998838 + . ID=CGI_10025893; scaffold733 WUBlastX LINE_L1-Tx1 889816 890124 190 - . . scaffold733 GLEAN mRNA 891211 891777 0.998838 + . ID=CGI_10025893; scaffold733 WUBlastX LINE_L1 891211 891777 74 - . . scaffold733 GLEAN mRNA 888887 889363 0.998838 + . ID=CGI_10025893; scaffold733 WUBlastX LINE_L1-Tx1 888887 889363 107 - . . scaffold733 GLEAN mRNA 888875 889522 0.998838 + . ID=CGI_10025893; scaffold733 WUBlastX LINE_L1-Tx1 888875 889522 68 - . . scaffold733 GLEAN mRNA 891259 891732 0.998838 + . ID=CGI_10025893; scaffold733 WUBlastX LINE_L1 891259 891732 140 - . . scaffold733 GLEAN mRNA 889801 890205 0.998838 + . ID=CGI_10025893; scaffold733 WUBlastX LINE_L1 889801 890205 98 - . . scaffold733 GLEAN mRNA 889524 889736 0.998838 + . ID=CGI_10025893; scaffold733 WUBlastX LINE_L1-Tx1 889524 889736 31 - . . scaffold733 GLEAN mRNA 913418 913573 0.513726 - . ID=CGI_10025894; scaffold733 WUBlastX LINE_CR1 913418 913573 23 - . . scaffold733 GLEAN mRNA 1018219 1018812 0.995936 + . ID=CGI_10025901; scaffold733 WUBlastX LTR_Gypsy 1018219 1018812 41 + . . scaffold733 GLEAN mRNA 1017757 1018191 0.995936 + . ID=CGI_10025901; scaffold733 WUBlastX LTR_Gypsy 1017757 1018191 26 + . . scaffold733 GLEAN mRNA 1017931 1018638 0.995936 + . ID=CGI_10025901; scaffold733 WUBlastX LTR_Gypsy 1017931 1018638 43 + . . scaffold733 GLEAN mRNA 1019835 1019905 0.995936 + . ID=CGI_10025901; scaffold733 WUBlastX LTR_Gypsy 1019835 1020005 22 + . . scaffold733 GLEAN mRNA 1070353 1070408 0.985844 - . ID=CGI_10025904; scaffold733 TRF Tandem_Repeat 1070353 1070408 67 + . . scaffold733 GLEAN mRNA 1073313 1073356 0.985844 - . ID=CGI_10025904; scaffold733 TRF Tandem_Repeat 1073313 1073356 88 + . . scaffold334 GLEAN mRNA 18120 18959 0.999243 + . ID=CGI_10025907; scaffold334 TRF Tandem_Repeat 18120 18959 896 + . . scaffold334 GLEAN mRNA 56062 56117 0.933083 - . ID=CGI_10025908; scaffold334 TRF Tandem_Repeat 56062 56117 112 + . . scaffold334 GLEAN mRNA 64558 65256 0.851915 + . ID=CGI_10025909; scaffold334 TRF Tandem_Repeat 64558 65256 1071 + . . scaffold334 GLEAN mRNA 67308 67566 0.851915 + . ID=CGI_10025909; scaffold334 TRF Tandem_Repeat 67308 67566 419 + . . scaffold334 GLEAN mRNA 67308 67665 0.851915 + . ID=CGI_10025909; scaffold334 TRF Tandem_Repeat 67308 67665 452 + . . scaffold334 GLEAN mRNA 67308 67665 0.851915 + . ID=CGI_10025909; scaffold334 TRF Tandem_Repeat 67308 67665 452 + . . scaffold334 GLEAN mRNA 67565 67665 0.851915 + . ID=CGI_10025909; scaffold334 TRF Tandem_Repeat 67565 67665 107 + . . scaffold334 GLEAN mRNA 68220 69308 0.851915 + . ID=CGI_10025909; scaffold334 TRF Tandem_Repeat 68220 69308 806 + . . scaffold334 GLEAN mRNA 68857 68947 0.851915 + . ID=CGI_10025909; scaffold334 TRF Tandem_Repeat 68857 68947 64 + . . scaffold334 GLEAN mRNA 69416 69815 0.851915 + . ID=CGI_10025909; scaffold334 TRF Tandem_Repeat 69416 69815 444 + . . scaffold334 GLEAN mRNA 72460 72820 0.851915 + . ID=CGI_10025909; scaffold334 TRF Tandem_Repeat 72460 72820 521 + . . scaffold334 GLEAN mRNA 85414 85709 0.991764 - . ID=CGI_10025910; scaffold334 TRF Tandem_Repeat 85414 85709 304 + . . scaffold334 GLEAN mRNA 90311 90994 0.991764 - . ID=CGI_10025910; scaffold334 TRF Tandem_Repeat 90311 90994 1019 + . . scaffold334 GLEAN mRNA 91590 92053 0.991764 - . ID=CGI_10025910; scaffold334 TRF Tandem_Repeat 91590 92053 490 + . . scaffold334 GLEAN mRNA 92450 92704 0.991764 - . ID=CGI_10025910; scaffold334 TRF Tandem_Repeat 92450 92704 251 + . . scaffold334 GLEAN mRNA 93284 93308 0.991764 - . ID=CGI_10025910; scaffold334 TRF Tandem_Repeat 93284 93308 50 + . . scaffold334 GLEAN mRNA 95905 96102 0.991764 - . ID=CGI_10025910; scaffold334 TRF Tandem_Repeat 95905 96102 308 + . . scaffold334 GLEAN mRNA 96176 96643 0.991764 - . ID=CGI_10025910; scaffold334 TRF Tandem_Repeat 96176 96643 467 + . . scaffold334 GLEAN mRNA 110383 110651 0.460378 - . ID=CGI_10025911; scaffold334 TRF Tandem_Repeat 110383 110651 511 + . . scaffold334 GLEAN mRNA 104303 104737 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 104303 104737 113 - . . scaffold334 GLEAN mRNA 107528 107806 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 107528 107806 133 - . . scaffold334 GLEAN mRNA 107943 108047 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 107943 108047 40 - . . scaffold334 GLEAN mRNA 109000 109200 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 109000 109200 124 - . . scaffold334 GLEAN mRNA 107061 107180 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 107061 107180 48 - . . scaffold334 GLEAN mRNA 105478 105606 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 105478 105606 52 - . . scaffold334 GLEAN mRNA 105997 106095 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 105997 106095 43 - . . scaffold334 GLEAN mRNA 106504 106701 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 106504 106701 110 - . . scaffold334 GLEAN mRNA 125332 125838 0.998718 + . ID=CGI_10025912; scaffold334 TRF Tandem_Repeat 125332 125838 539 + . . scaffold334 GLEAN mRNA 161348 161712 0.995149 + . ID=CGI_10025918; scaffold334 TRF Tandem_Repeat 161348 161712 448 + . . scaffold334 GLEAN mRNA 161348 161712 0.995149 + . ID=CGI_10025918; scaffold334 TRF Tandem_Repeat 161348 161712 518 + . . scaffold334 GLEAN mRNA 161825 161908 0.995149 + . ID=CGI_10025918; scaffold334 TRF Tandem_Repeat 161825 161908 96 + . . scaffold334 GLEAN mRNA 168960 169371 0.733817 + . ID=CGI_10025919; scaffold334 TRF Tandem_Repeat 168960 169371 598 + . . scaffold334 GLEAN mRNA 169070 169455 0.733817 + . ID=CGI_10025919; scaffold334 TRF Tandem_Repeat 169070 169455 201 + . . scaffold334 GLEAN mRNA 172342 172397 0.733817 + . ID=CGI_10025919; scaffold334 TRF Tandem_Repeat 172342 172397 112 + . . scaffold334 GLEAN mRNA 177695 178656 0.733817 + . ID=CGI_10025919; scaffold334 TRF Tandem_Repeat 177695 178656 1336 + . . scaffold334 GLEAN mRNA 179674 179798 0.733817 + . ID=CGI_10025919; scaffold334 TRF Tandem_Repeat 179674 179798 101 + . . scaffold334 GLEAN mRNA 179674 179816 0.733817 + . ID=CGI_10025919; scaffold334 TRF Tandem_Repeat 179674 179816 103 + . . scaffold334 GLEAN mRNA 204153 204326 0.986269 - . ID=CGI_10025922; scaffold334 TRF Tandem_Repeat 204153 204326 177 + . . scaffold334 GLEAN mRNA 204142 204493 0.986269 - . ID=CGI_10025922; scaffold334 TRF Tandem_Repeat 204142 204493 337 + . . scaffold334 GLEAN mRNA 204297 204524 0.986269 - . ID=CGI_10025922; scaffold334 TRF Tandem_Repeat 204297 204524 181 + . . scaffold334 GLEAN mRNA 207177 207229 0.986269 - . ID=CGI_10025922; scaffold334 TRF Tandem_Repeat 207177 207229 106 + . . scaffold334 GLEAN mRNA 216274 217827 0.63631 - . ID=CGI_10025923; scaffold334 TRF Tandem_Repeat 216274 217827 1697 + . . scaffold334 GLEAN mRNA 218067 219102 0.63631 - . ID=CGI_10025923; scaffold334 TRF Tandem_Repeat 218067 219102 1589 + . . scaffold334 GLEAN mRNA 226726 226904 0.560951 + . ID=CGI_10025924; scaffold334 TRF Tandem_Repeat 226726 226904 90 + . . scaffold334 GLEAN mRNA 226745 226904 0.560951 + . ID=CGI_10025924; scaffold334 TRF Tandem_Repeat 226745 226904 212 + . . scaffold334 GLEAN mRNA 242313 242364 0.273559 - . ID=CGI_10025926; scaffold334 TRF Tandem_Repeat 242313 242364 104 + . . scaffold334 GLEAN mRNA 242369 242874 0.273559 - . ID=CGI_10025926; scaffold334 TRF Tandem_Repeat 242369 242874 764 + . . scaffold334 GLEAN mRNA 252801 252987 0.273559 - . ID=CGI_10025926; scaffold334 TRF Tandem_Repeat 252801 252987 330 + . . scaffold334 GLEAN mRNA 256496 256533 0.273559 - . ID=CGI_10025926; scaffold334 TRF Tandem_Repeat 256496 256533 58 + . . scaffold334 GLEAN mRNA 256496 256540 0.273559 - . ID=CGI_10025926; scaffold334 TRF Tandem_Repeat 256496 256540 54 + . . scaffold334 GLEAN mRNA 256580 256630 0.273559 - . ID=CGI_10025926; scaffold334 TRF Tandem_Repeat 256580 256630 102 + . . scaffold334 GLEAN mRNA 260270 261373 0.273559 - . ID=CGI_10025926; scaffold334 TRF Tandem_Repeat 260270 261373 1049 + . . scaffold334 GLEAN mRNA 260270 261373 0.273559 - . ID=CGI_10025926; scaffold334 TRF Tandem_Repeat 260270 261373 1177 + . . scaffold334 GLEAN mRNA 263288 263327 0.273559 - . ID=CGI_10025926; scaffold334 TRF Tandem_Repeat 263288 263327 55 + . . scaffold334 GLEAN mRNA 282812 282859 0.903728 - . ID=CGI_10025927; scaffold334 TRF Tandem_Repeat 282812 282859 96 + . . scaffold334 GLEAN mRNA 298636 298871 0.700807 + . ID=CGI_10025928; scaffold334 TRF Tandem_Repeat 298636 298871 141 + . . scaffold334 GLEAN mRNA 318798 319454 0.508125 + . ID=CGI_10025930; scaffold334 WUBlastX DNA_hAT 318798 319454 207 + . . scaffold334 GLEAN mRNA 319707 320102 0.508125 + . ID=CGI_10025930; scaffold334 WUBlastX DNA_hAT 319707 320102 32 + . . scaffold334 GLEAN mRNA 323491 324822 0.945369 + . ID=CGI_10025931; scaffold334 WUBlastX DNA_hAT 323491 324822 401 + . . scaffold334 GLEAN mRNA 330922 331382 0.649598 + . ID=CGI_10025932; scaffold334 TRF Tandem_Repeat 330169 331382 570 + . . scaffold334 GLEAN mRNA 330922 331388 0.649598 + . ID=CGI_10025932; scaffold334 TRF Tandem_Repeat 330402 331388 1258 + . . scaffold334 GLEAN mRNA 336202 336244 0.999478 + . ID=CGI_10025933; scaffold334 TRF Tandem_Repeat 336202 336244 54 + . . scaffold334 GLEAN mRNA 336410 337729 0.999478 + . ID=CGI_10025933; scaffold334 TRF Tandem_Repeat 336410 337729 1574 + . . scaffold334 GLEAN mRNA 336410 337756 0.999478 + . ID=CGI_10025933; scaffold334 TRF Tandem_Repeat 336410 337756 1576 + . . scaffold334 GLEAN mRNA 343414 343836 0.999478 + . ID=CGI_10025933; scaffold334 WUBlastX LINE_RTE-X 343414 343836 132 + . . scaffold334 GLEAN mRNA 343312 343848 0.999478 + . ID=CGI_10025933; scaffold334 WUBlastX LINE_RTE-X 343312 343848 96 + . . scaffold334 GLEAN mRNA 346212 346263 0.999478 + . ID=CGI_10025933; scaffold334 TRF Tandem_Repeat 346212 346263 104 + . . scaffold334 GLEAN mRNA 346264 346301 0.999478 + . ID=CGI_10025933; scaffold334 TRF Tandem_Repeat 346264 346301 76 + . . scaffold334 GLEAN mRNA 351239 351277 0.999478 + . ID=CGI_10025933; scaffold334 TRF Tandem_Repeat 351239 351277 78 + . . scaffold334 GLEAN mRNA 359973 360020 1 - . ID=CGI_10025934; scaffold334 TRF Tandem_Repeat 359973 360020 80 + . . scaffold334 GLEAN mRNA 361236 361333 1 - . ID=CGI_10025934; scaffold334 TRF Tandem_Repeat 361236 361333 151 + . . scaffold334 GLEAN mRNA 375713 375985 0.999645 - . ID=CGI_10025936; scaffold334 TRF Tandem_Repeat 375713 375985 372 + . . scaffold334 GLEAN mRNA 417514 417661 0.499832 - . ID=CGI_10025937; scaffold334 TRF Tandem_Repeat 417274 417661 251 + . . scaffold334 GLEAN mRNA 417514 417924 0.499832 - . ID=CGI_10025937; scaffold334 TRF Tandem_Repeat 417430 417924 594 + . . scaffold334 GLEAN mRNA 417665 417924 0.499832 - . ID=CGI_10025937; scaffold334 TRF Tandem_Repeat 417665 417924 443 + . . scaffold334 GLEAN mRNA 424974 425561 0.499832 - . ID=CGI_10025937; scaffold334 TRF Tandem_Repeat 424974 425561 745 + . . scaffold334 GLEAN mRNA 431814 432070 0.499832 - . ID=CGI_10025937; scaffold334 TRF Tandem_Repeat 431814 432070 408 + . . scaffold334 GLEAN mRNA 424974 425561 1 + . ID=CGI_10025938; scaffold334 TRF Tandem_Repeat 424974 425561 745 + . . scaffold334 GLEAN mRNA 431814 432070 1 + . ID=CGI_10025938; scaffold334 TRF Tandem_Repeat 431814 432070 408 + . . scaffold334 GLEAN mRNA 440375 440546 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 440375 440546 317 + . . scaffold334 GLEAN mRNA 443517 443769 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 443517 443769 398 + . . scaffold334 GLEAN mRNA 447603 447872 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 447603 447872 434 + . . scaffold334 GLEAN mRNA 454132 455123 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 454132 455123 1140 + . . scaffold334 GLEAN mRNA 454132 456071 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 454132 456071 1405 + . . scaffold334 GLEAN mRNA 455130 455445 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 455130 455445 355 + . . scaffold334 GLEAN mRNA 455443 456071 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 455443 456071 650 + . . scaffold334 GLEAN mRNA 455443 456071 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 455443 456071 683 + . . scaffold334 GLEAN mRNA 459039 459620 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 459039 459620 317 + . . scaffold334 GLEAN mRNA 462665 462935 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 462665 462935 492 + . . scaffold334 GLEAN mRNA 462896 463615 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 462896 463615 675 + . . scaffold334 GLEAN mRNA 462697 463615 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 462697 463615 608 + . . scaffold334 GLEAN mRNA 462831 463615 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 462831 463615 715 + . . scaffold334 GLEAN mRNA 442244 442787 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 442244 442787 935 + . . scaffold334 GLEAN mRNA 477595 477766 0.747309 + . ID=CGI_10025940; scaffold334 TRF Tandem_Repeat 477595 477766 326 + . . scaffold334 GLEAN mRNA 478456 478945 0.747309 + . ID=CGI_10025940; scaffold334 TRF Tandem_Repeat 478456 478945 474 + . . scaffold334 GLEAN mRNA 478456 478945 0.747309 + . ID=CGI_10025940; scaffold334 TRF Tandem_Repeat 478456 478945 337 + . . scaffold334 GLEAN mRNA 478456 478945 0.747309 + . ID=CGI_10025940; scaffold334 TRF Tandem_Repeat 478456 478945 445 + . . scaffold334 GLEAN mRNA 481951 482002 0.747309 + . ID=CGI_10025940; scaffold334 TRF Tandem_Repeat 481951 482002 63 + . . scaffold334 GLEAN mRNA 482064 483568 0.747309 + . ID=CGI_10025940; scaffold334 TRF Tandem_Repeat 482064 483568 1414 + . . scaffold334 GLEAN mRNA 482061 483477 0.747309 + . ID=CGI_10025940; scaffold334 TRF Tandem_Repeat 482061 483477 557 + . . scaffold334 GLEAN mRNA 482073 483535 0.747309 + . ID=CGI_10025940; scaffold334 TRF Tandem_Repeat 482073 483535 863 + . . scaffold334 GLEAN mRNA 502880 503792 0.946884 + . ID=CGI_10025943; scaffold334 TRF Tandem_Repeat 502880 503792 1092 + . . scaffold334 GLEAN mRNA 519849 520044 0.734695 + . ID=CGI_10025945; scaffold334 TRF Tandem_Repeat 519849 520044 247 + . . scaffold334 GLEAN mRNA 522187 522946 0.734695 + . ID=CGI_10025945; scaffold334 TRF Tandem_Repeat 522187 522946 1216 + . . scaffold334 GLEAN mRNA 527798 528082 0.734695 + . ID=CGI_10025945; scaffold334 TRF Tandem_Repeat 527798 528082 137 + . . scaffold334 GLEAN mRNA 530246 531516 0.734695 + . ID=CGI_10025945; scaffold334 TRF Tandem_Repeat 530246 531516 1982 + . . scaffold334 GLEAN mRNA 530246 531516 0.734695 + . ID=CGI_10025945; scaffold334 TRF Tandem_Repeat 530246 531516 2018 + . . scaffold334 GLEAN mRNA 533430 535162 0.471287 + . ID=CGI_10025946; scaffold334 TRF Tandem_Repeat 533430 535162 2619 + . . scaffold334 GLEAN mRNA 537007 537562 0.471287 + . ID=CGI_10025946; scaffold334 TRF Tandem_Repeat 537007 537562 1031 + . . scaffold334 GLEAN mRNA 539024 539222 0.471287 + . ID=CGI_10025946; scaffold334 TRF Tandem_Repeat 539024 539222 289 + . . scaffold334 GLEAN mRNA 548187 548652 0.471287 + . ID=CGI_10025946; scaffold334 TRF Tandem_Repeat 548187 548652 491 + . . scaffold334 GLEAN mRNA 548187 548652 0.471287 + . ID=CGI_10025946; scaffold334 TRF Tandem_Repeat 548187 548652 575 + . . scaffold334 GLEAN mRNA 552821 552857 0.471287 + . ID=CGI_10025946; scaffold334 TRF Tandem_Repeat 552821 552857 74 + . . scaffold334 GLEAN mRNA 552951 554038 0.471287 + . ID=CGI_10025946; scaffold334 TRF Tandem_Repeat 552951 554038 890 + . . scaffold334 GLEAN mRNA 552951 554038 0.471287 + . ID=CGI_10025946; scaffold334 TRF Tandem_Repeat 552951 554038 463 + . . scaffold334 GLEAN mRNA 553221 554038 0.471287 + . ID=CGI_10025946; scaffold334 TRF Tandem_Repeat 553221 554038 936 + . . scaffold334 GLEAN mRNA 553283 553855 1 - . ID=CGI_10025947; scaffold334 TRF Tandem_Repeat 552951 554038 890 + . . scaffold334 GLEAN mRNA 553283 553855 1 - . ID=CGI_10025947; scaffold334 TRF Tandem_Repeat 552951 554038 463 + . . scaffold334 GLEAN mRNA 553283 553855 1 - . ID=CGI_10025947; scaffold334 TRF Tandem_Repeat 553221 554038 936 + . . scaffold334 GLEAN mRNA 568795 569278 1 - . ID=CGI_10025949; scaffold334 TRF Tandem_Repeat 568795 569278 887 + . . scaffold334 GLEAN mRNA 568795 569709 1 - . ID=CGI_10025949; scaffold334 TRF Tandem_Repeat 568795 569709 1532 + . . scaffold334 GLEAN mRNA 568795 569709 1 - . ID=CGI_10025949; scaffold334 TRF Tandem_Repeat 568795 569709 1541 + . . scaffold334 GLEAN mRNA 569275 569709 1 - . ID=CGI_10025949; scaffold334 TRF Tandem_Repeat 569275 569709 780 + . . scaffold334 GLEAN mRNA 569566 569707 1 - . ID=CGI_10025949; scaffold334 TRF Tandem_Repeat 569566 569707 76 + . . scaffold334 GLEAN mRNA 569540 569681 1 - . ID=CGI_10025949; scaffold334 TRF Tandem_Repeat 569540 569681 97 + . . scaffold334 GLEAN mRNA 573124 573653 1 - . ID=CGI_10025949; scaffold334 TRF Tandem_Repeat 573124 573653 445 + . . scaffold334 GLEAN mRNA 623048 623274 1 + . ID=CGI_10025954; scaffold334 TRF Tandem_Repeat 623048 623274 375 + . . scaffold334 GLEAN mRNA 631593 631630 0.999676 - . ID=CGI_10025955; scaffold334 TRF Tandem_Repeat 631593 631630 51 + . . scaffold334 GLEAN mRNA 635773 635815 0.999676 - . ID=CGI_10025955; scaffold334 TRF Tandem_Repeat 635773 635815 86 + . . scaffold334 GLEAN mRNA 639599 640004 0.999676 - . ID=CGI_10025955; scaffold334 TRF Tandem_Repeat 639599 640004 614 + . . scaffold334 GLEAN mRNA 639968 640157 0.999676 - . ID=CGI_10025955; scaffold334 TRF Tandem_Repeat 639968 640157 133 + . . scaffold334 GLEAN mRNA 640040 640358 0.999676 - . ID=CGI_10025955; scaffold334 TRF Tandem_Repeat 640040 640358 523 + . . scaffold334 GLEAN mRNA 639822 640944 0.999676 - . ID=CGI_10025955; scaffold334 TRF Tandem_Repeat 639822 640944 641 + . . scaffold334 GLEAN mRNA 640246 640435 0.999676 - . ID=CGI_10025955; scaffold334 TRF Tandem_Repeat 640246 640435 124 + . . scaffold334 GLEAN mRNA 640271 641017 0.999676 - . ID=CGI_10025955; scaffold334 TRF Tandem_Repeat 640271 641017 403 + . . scaffold334 GLEAN mRNA 644477 644515 0.999676 - . ID=CGI_10025955; scaffold334 TRF Tandem_Repeat 644477 644515 60 + . . scaffold334 GLEAN mRNA 646134 646263 0.999676 - . ID=CGI_10025955; scaffold334 TRF Tandem_Repeat 646134 646263 93 + . . scaffold334 GLEAN mRNA 646179 646325 0.999676 - . ID=CGI_10025955; scaffold334 TRF Tandem_Repeat 646179 646325 73 + . . scaffold334 GLEAN mRNA 647673 647710 0.999676 - . ID=CGI_10025955; scaffold334 TRF Tandem_Repeat 647673 647710 60 + . . scaffold334 GLEAN mRNA 652896 652936 0.999949 + . ID=CGI_10025956; scaffold334 TRF Tandem_Repeat 652896 652936 75 + . . scaffold334 GLEAN mRNA 653788 654229 0.999949 + . ID=CGI_10025956; scaffold334 TRF Tandem_Repeat 653788 654229 486 + . . scaffold334 GLEAN mRNA 653788 654398 0.999949 + . ID=CGI_10025956; scaffold334 TRF Tandem_Repeat 653788 654398 470 + . . scaffold334 GLEAN mRNA 653788 654229 0.999949 + . ID=CGI_10025956; scaffold334 TRF Tandem_Repeat 653788 654229 473 + . . scaffold334 GLEAN mRNA 654231 654398 0.999949 + . ID=CGI_10025956; scaffold334 TRF Tandem_Repeat 654231 654398 228 + . . scaffold334 GLEAN mRNA 656582 657221 0.999949 + . ID=CGI_10025956; scaffold334 TRF Tandem_Repeat 656582 657221 863 + . . scaffold334 GLEAN mRNA 673042 673310 0.66854 - . ID=CGI_10025957; scaffold334 TRF Tandem_Repeat 673042 673310 475 + . . scaffold334 GLEAN mRNA 705397 706060 0.999675 - . ID=CGI_10025959; scaffold334 TRF Tandem_Repeat 705397 706060 468 + . . scaffold334 GLEAN mRNA 708162 708282 0.999675 - . ID=CGI_10025959; scaffold334 TRF Tandem_Repeat 708162 708282 188 + . . scaffold334 GLEAN mRNA 710536 710611 0.999675 - . ID=CGI_10025959; scaffold334 TRF Tandem_Repeat 710536 710611 91 + . . scaffold334 GLEAN mRNA 710522 710611 0.999675 - . ID=CGI_10025959; scaffold334 TRF Tandem_Repeat 710522 710611 67 + . . scaffold334 GLEAN mRNA 707481 707621 0.999675 - . ID=CGI_10025959; scaffold334 WUBlastX DNA_Harbinger 707481 707621 69 + . . scaffold334 GLEAN mRNA 707900 708046 0.999675 - . ID=CGI_10025959; scaffold334 WUBlastX DNA_Harbinger 707900 708046 36 + . . scaffold334 GLEAN mRNA 705397 706060 0.616168 + . ID=CGI_10025960; scaffold334 TRF Tandem_Repeat 705397 706060 468 + . . scaffold334 GLEAN mRNA 708162 708282 0.616168 + . ID=CGI_10025960; scaffold334 TRF Tandem_Repeat 708162 708282 188 + . . scaffold334 GLEAN mRNA 710536 710611 0.616168 + . ID=CGI_10025960; scaffold334 TRF Tandem_Repeat 710536 710611 91 + . . scaffold334 GLEAN mRNA 710522 710611 0.616168 + . ID=CGI_10025960; scaffold334 TRF Tandem_Repeat 710522 710611 67 + . . scaffold334 GLEAN mRNA 714922 714956 0.616168 + . ID=CGI_10025960; scaffold334 TRF Tandem_Repeat 714922 714956 52 + . . scaffold334 GLEAN mRNA 716034 716100 0.616168 + . ID=CGI_10025960; scaffold334 TRF Tandem_Repeat 716034 716100 71 + . . scaffold334 GLEAN mRNA 707481 707621 0.616168 + . ID=CGI_10025960; scaffold334 WUBlastX DNA_Harbinger 707481 707621 69 + . . scaffold334 GLEAN mRNA 707900 708046 0.616168 + . ID=CGI_10025960; scaffold334 WUBlastX DNA_Harbinger 707900 708046 36 + . . scaffold334 GLEAN mRNA 749920 751443 0.999025 - . ID=CGI_10025961; scaffold334 TRF Tandem_Repeat 749920 751443 2264 + . . scaffold334 GLEAN mRNA 749920 751443 0.999025 - . ID=CGI_10025961; scaffold334 TRF Tandem_Repeat 749920 751443 2262 + . . scaffold334 GLEAN mRNA 773298 773391 0.645847 - . ID=CGI_10025962; scaffold334 TRF Tandem_Repeat 773298 773391 107 + . . scaffold334 GLEAN mRNA 773470 773608 0.645847 - . ID=CGI_10025962; scaffold334 TRF Tandem_Repeat 773470 773608 149 + . . scaffold334 GLEAN mRNA 773660 773824 0.645847 - . ID=CGI_10025962; scaffold334 TRF Tandem_Repeat 773660 773824 179 + . . scaffold334 GLEAN mRNA 773896 773987 0.645847 - . ID=CGI_10025962; scaffold334 TRF Tandem_Repeat 773896 773987 105 + . . scaffold334 GLEAN mRNA 777648 778211 0.645847 - . ID=CGI_10025962; scaffold334 TRF Tandem_Repeat 777648 778211 756 + . . scaffold334 GLEAN mRNA 787946 788860 0.645847 - . ID=CGI_10025962; scaffold334 WUBlastX LTR_Ngaro 787946 788860 404 - . . scaffold334 GLEAN mRNA 788851 789570 0.645847 - . ID=CGI_10025962; scaffold334 WUBlastX LTR_Ngaro 788851 789570 521 - . . scaffold334 GLEAN mRNA 789572 789598 0.645847 - . ID=CGI_10025962; scaffold334 WUBlastX LTR_Ngaro 789572 790372 520 - . . scaffold334 GLEAN mRNA 818405 818653 0.645784 - . ID=CGI_10025963; scaffold334 WUBlastX LTR_Gypsy-Troyk 818393 818671 29 - . . scaffold334 GLEAN mRNA 818405 818542 0.645784 - . ID=CGI_10025963; scaffold334 WUBlastX LTR_Gypsy-Troyk 817889 818542 110 - . . scaffold334 GLEAN mRNA 864768 864835 0.864897 - . ID=CGI_10025964; scaffold334 TRF Tandem_Repeat 864768 864835 127 + . . scaffold334 GLEAN mRNA 869105 869265 0.864897 - . ID=CGI_10025964; scaffold334 TRF Tandem_Repeat 869105 869265 313 + . . scaffold334 GLEAN mRNA 884511 884538 0.484678 - . ID=CGI_10025965; scaffold334 TRF Tandem_Repeat 884511 884538 56 + . . scaffold334 GLEAN mRNA 894679 894734 0.484678 - . ID=CGI_10025965; scaffold334 TRF Tandem_Repeat 894679 894734 112 + . . scaffold334 GLEAN mRNA 902886 902958 0.484678 - . ID=CGI_10025965; scaffold334 TRF Tandem_Repeat 902886 902958 125 + . . scaffold334 GLEAN mRNA 1034627 1034660 0.961302 - . ID=CGI_10025971; scaffold334 TRF Tandem_Repeat 1034627 1034660 52 + . . scaffold334 GLEAN mRNA 1035407 1035470 0.961302 - . ID=CGI_10025971; scaffold334 TRF Tandem_Repeat 1035407 1035470 50 + . . scaffold334 GLEAN mRNA 1037133 1037194 0.961302 - . ID=CGI_10025971; scaffold334 TRF Tandem_Repeat 1037133 1037194 63 + . . scaffold334 GLEAN mRNA 1037140 1037191 0.961302 - . ID=CGI_10025971; scaffold334 TRF Tandem_Repeat 1037140 1037191 59 + . . scaffold334 GLEAN mRNA 1046169 1046279 0.961302 - . ID=CGI_10025971; scaffold334 WUBlastX LINE_L1-Tx1 1046169 1046279 65 + . . scaffold334 GLEAN mRNA 1046546 1048225 0.961302 - . ID=CGI_10025971; scaffold334 WUBlastX LINE_L1-Tx1 1046546 1048225 332 + . . scaffold334 GLEAN mRNA 1046272 1047297 0.961302 - . ID=CGI_10025971; scaffold334 WUBlastX LINE_L1-Tx1 1046272 1047297 166 + . . scaffold334 GLEAN mRNA 1046142 1046270 0.961302 - . ID=CGI_10025971; scaffold334 WUBlastX LINE_L1-Tx1 1046142 1046270 41 + . . scaffold334 GLEAN mRNA 1046073 1046276 0.961302 - . ID=CGI_10025971; scaffold334 WUBlastX LINE_L1-Tx1 1046073 1046276 28 + . . scaffold334 GLEAN mRNA 1048227 1048457 0.961302 - . ID=CGI_10025971; scaffold334 WUBlastX LINE_L1 1048227 1048457 58 + . . scaffold334 GLEAN mRNA 1060047 1060866 0.961302 - . ID=CGI_10025971; scaffold334 TRF Tandem_Repeat 1060047 1060866 959 + . . scaffold334 GLEAN mRNA 1061041 1061086 0.961302 - . ID=CGI_10025971; scaffold334 TRF Tandem_Repeat 1061041 1061086 56 + . . scaffold334 GLEAN mRNA 1061404 1062400 0.961302 - . ID=CGI_10025971; scaffold334 TRF Tandem_Repeat 1061404 1062400 1341 + . . scaffold334 GLEAN mRNA 1049133 1049228 0.961302 - . ID=CGI_10025971; scaffold334 WUBlastX LINE_L1-Tx1 1049133 1049228 25 + . . scaffold334 GLEAN mRNA 1065891 1066289 0.961302 - . ID=CGI_10025971; scaffold334 TRF Tandem_Repeat 1065891 1066289 465 + . . scaffold334 GLEAN mRNA 1066887 1067331 0.961302 - . ID=CGI_10025971; scaffold334 TRF Tandem_Repeat 1066887 1067331 550 + . . scaffold334 GLEAN mRNA 1067554 1067810 0.961302 - . ID=CGI_10025971; scaffold334 TRF Tandem_Repeat 1067554 1067810 266 + . . scaffold334 GLEAN mRNA 1067803 1067985 0.961302 - . ID=CGI_10025971; scaffold334 TRF Tandem_Repeat 1067803 1067985 312 + . . scaffold334 GLEAN mRNA 1048230 1048769 0.961302 - . ID=CGI_10025971; scaffold334 WUBlastX LINE_L1-Tx1 1048230 1048769 44 + . . scaffold425 GLEAN mRNA 127587 128141 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 127587 128141 199 - . . scaffold425 GLEAN mRNA 128955 129554 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 128955 129554 117 + . . scaffold425 GLEAN mRNA 127016 127192 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 127016 127192 57 + . . scaffold425 GLEAN mRNA 126656 126922 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 126656 126922 40 + . . scaffold425 GLEAN mRNA 127022 127144 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 127022 127144 66 + . . scaffold425 GLEAN mRNA 128047 128349 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 128047 128349 145 - . . scaffold425 GLEAN mRNA 128047 128514 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_Kolobok-IS4 128047 128514 141 - . . scaffold425 GLEAN mRNA 128056 128610 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 128056 128610 136 - . . scaffold425 GLEAN mRNA 129060 129560 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 129060 129560 278 + . . scaffold425 GLEAN mRNA 135792 135953 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 135792 135953 29 + . . scaffold425 GLEAN mRNA 134962 135528 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 134962 135528 253 + . . scaffold425 GLEAN mRNA 136697 137377 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 136697 137377 233 + . . scaffold425 GLEAN mRNA 138118 139476 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 138118 139476 466 - . . scaffold425 GLEAN mRNA 138970 139623 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 138970 139623 114 - . . scaffold425 GLEAN mRNA 136709 137503 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_Kolobok-IS4 136709 137503 187 + . . scaffold425 GLEAN mRNA 136712 137749 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 136712 137749 133 + . . scaffold425 GLEAN mRNA 138124 139272 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 138124 139272 728 - . . scaffold425 GLEAN mRNA 142285 142425 1 + . ID=CGI_10025978; scaffold425 WUBlastX DNA_Kolobok 142285 142425 84 + . . scaffold425 GLEAN mRNA 143448 143831 0.999415 - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 143448 143831 74 - . . scaffold425 GLEAN mRNA 143017 143190 0.999415 - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 143017 143190 72 - . . scaffold425 GLEAN mRNA 144020 144448 0.999415 - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 144020 144703 173 - . . scaffold425 GLEAN mRNA 143282 143530 0.999415 - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 143282 143530 96 - . . scaffold425 GLEAN mRNA 143333 143536 0.999415 - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 143333 143536 96 - . . scaffold425 GLEAN mRNA 143646 143834 0.999415 - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 143646 143834 128 - . . scaffold425 GLEAN mRNA 144023 144448 0.999415 - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 144023 144937 160 - . . scaffold425 GLEAN mRNA 219878 220276 0.998748 - . ID=CGI_10025981; scaffold425 WUBlastX DNA_TcMar-Fot1 219878 220342 90 - . . scaffold425 GLEAN mRNA 265276 265317 0.64352 - . ID=CGI_10025982; scaffold425 TRF Tandem_Repeat 265276 265317 84 + . . scaffold425 GLEAN mRNA 265561 265690 0.64352 - . ID=CGI_10025982; scaffold425 TRF Tandem_Repeat 265561 265690 117 + . . scaffold425 GLEAN mRNA 265561 265690 0.64352 - . ID=CGI_10025982; scaffold425 TRF Tandem_Repeat 265561 265690 154 + . . scaffold425 GLEAN mRNA 515852 515948 0.533682 - . ID=CGI_10025986; scaffold425 TRF Tandem_Repeat 515852 515948 133 + . . scaffold425 GLEAN mRNA 514841 515119 0.533682 - . ID=CGI_10025986; scaffold425 WUBlastX LINE_L1-Tx1 514841 515119 84 - . . scaffold425 GLEAN mRNA 515134 515391 0.533682 - . ID=CGI_10025986; scaffold425 WUBlastX LINE_L1 515134 515391 32 - . . scaffold425 GLEAN mRNA 738169 738211 0.890669 + . ID=CGI_10025988; scaffold425 TRF Tandem_Repeat 738169 738211 56 + . . scaffold425 GLEAN mRNA 738384 739038 0.890669 + . ID=CGI_10025988; scaffold425 TRF Tandem_Repeat 738384 739038 869 + . . scaffold425 GLEAN mRNA 742949 743006 0.890669 + . ID=CGI_10025988; scaffold425 TRF Tandem_Repeat 742949 743006 98 + . . scaffold425 GLEAN mRNA 745609 746195 0.890669 + . ID=CGI_10025988; scaffold425 TRF Tandem_Repeat 745609 746195 518 + . . scaffold425 GLEAN mRNA 745609 746198 0.890669 + . ID=CGI_10025988; scaffold425 TRF Tandem_Repeat 745609 746198 459 + . . scaffold425 GLEAN mRNA 784438 784665 0.54737 - . ID=CGI_10025992; scaffold425 TRF Tandem_Repeat 784438 784665 348 + . . scaffold425 GLEAN mRNA 832357 832407 0.997886 + . ID=CGI_10025997; scaffold425 TRF Tandem_Repeat 832357 832407 57 + . . scaffold425 GLEAN mRNA 859246 859383 0.999538 + . ID=CGI_10025999; scaffold425 TRF Tandem_Repeat 859246 859383 172 + . . scaffold425 GLEAN mRNA 859567 859709 0.999538 + . ID=CGI_10025999; scaffold425 TRF Tandem_Repeat 859567 859709 94 + . . scaffold425 GLEAN mRNA 867597 867704 0.456872 - . ID=CGI_10026000; scaffold425 TRF Tandem_Repeat 867597 867704 147 + . . scaffold425 GLEAN mRNA 867604 867706 0.456872 - . ID=CGI_10026000; scaffold425 TRF Tandem_Repeat 867604 867706 98 + . . scaffold425 GLEAN mRNA 868623 868684 0.456872 - . ID=CGI_10026000; scaffold425 TRF Tandem_Repeat 868623 868684 124 + . . scaffold425 GLEAN mRNA 915509 915544 1 + . ID=CGI_10026003; scaffold425 TRF Tandem_Repeat 915509 915544 63 + . . scaffold425 GLEAN mRNA 933097 933451 0.991247 + . ID=CGI_10026005; scaffold425 TRF Tandem_Repeat 933097 933451 327 + . . scaffold425 GLEAN mRNA 933105 933500 0.991247 + . ID=CGI_10026005; scaffold425 TRF Tandem_Repeat 933105 933500 389 + . . scaffold425 GLEAN mRNA 939553 939596 1 - . ID=CGI_10026006; scaffold425 TRF Tandem_Repeat 939553 939596 54 + . . scaffold425 GLEAN mRNA 961222 961275 0.789156 - . ID=CGI_10026008; scaffold425 TRF Tandem_Repeat 961222 961275 99 + . . scaffold425 GLEAN mRNA 984989 985137 0.991599 - . ID=CGI_10026010; scaffold425 TRF Tandem_Repeat 984989 985137 97 + . . scaffold425 GLEAN mRNA 985053 985199 0.991599 - . ID=CGI_10026010; scaffold425 TRF Tandem_Repeat 985053 985199 73 + . . scaffold425 GLEAN mRNA 986164 986937 0.991599 - . ID=CGI_10026010; scaffold425 TRF Tandem_Repeat 986164 986937 696 + . . scaffold425 GLEAN mRNA 986983 987020 0.991599 - . ID=CGI_10026010; scaffold425 TRF Tandem_Repeat 986983 987020 60 + . . scaffold425 GLEAN mRNA 999893 999938 0.993112 - . ID=CGI_10026011; scaffold425 TRF Tandem_Repeat 999893 999938 92 + . . scaffold425 GLEAN mRNA 1013114 1013310 0.993112 - . ID=CGI_10026011; scaffold425 TRF Tandem_Repeat 1013114 1013310 263 + . . scaffold425 GLEAN mRNA 1023842 1023967 0.993112 - . ID=CGI_10026011; scaffold425 WUBlastX LTR_Gypsy 1023842 1023967 42 - . . scaffold425 GLEAN mRNA 1023848 1024009 0.993112 - . ID=CGI_10026011; scaffold425 WUBlastX LTR_Gypsy 1023848 1024009 38 - . . scaffold425 GLEAN mRNA 1024651 1024830 0.993112 - . ID=CGI_10026011; scaffold425 WUBlastX LTR_Gypsy 1024651 1024830 49 - . . scaffold425 GLEAN mRNA 1041842 1041878 0.499838 + . ID=CGI_10026014; scaffold425 TRF Tandem_Repeat 1041842 1041878 74 + . . scaffold425 GLEAN mRNA 1045153 1045302 0.499838 + . ID=CGI_10026014; scaffold425 TRF Tandem_Repeat 1045153 1045302 223 + . . scaffold425 GLEAN mRNA 1041842 1041878 1 - . ID=CGI_10026015; scaffold425 TRF Tandem_Repeat 1041842 1041878 74 + . . scaffold425 GLEAN mRNA 1045153 1045302 1 - . ID=CGI_10026015; scaffold425 TRF Tandem_Repeat 1045153 1045302 223 + . . scaffold425 GLEAN mRNA 1071094 1071157 0.999997 + . ID=CGI_10026017; scaffold425 TRF Tandem_Repeat 1071094 1071157 119 + . . scaffold425 GLEAN mRNA 1114176 1114207 1 + . ID=CGI_10026020; scaffold425 TRF Tandem_Repeat 1114176 1114207 64 + . . scaffold1174 GLEAN mRNA 38490 38582 1 - . ID=CGI_10026023; scaffold1174 WUBlastX LINE_L1 38490 38582 20 - . . scaffold1174 GLEAN mRNA 37143 38144 1 - . ID=CGI_10026023; scaffold1174 WUBlastX LINE_L1-Tx1 37143 38144 133 - . . scaffold1174 GLEAN mRNA 65530 65598 1 + . ID=CGI_10026025; scaffold1174 TRF Tandem_Repeat 65530 65598 59 + . . scaffold1174 GLEAN mRNA 142997 143101 0.527772 + . ID=CGI_10026027; scaffold1174 TRF Tandem_Repeat 142997 143101 192 + . . scaffold1174 GLEAN mRNA 140519 141031 0.527772 + . ID=CGI_10026027; scaffold1174 WUBlastX LINE_CR1-L2 140519 141031 185 - . . scaffold1174 GLEAN mRNA 141217 141258 0.527772 + . ID=CGI_10026027; scaffold1174 WUBlastX LINE_CR1 141217 141258 20 - . . scaffold1174 GLEAN mRNA 141027 141218 0.527772 + . ID=CGI_10026027; scaffold1174 WUBlastX LINE_L2 141027 141218 58 - . . scaffold1174 GLEAN mRNA 141051 141251 0.527772 + . ID=CGI_10026027; scaffold1174 WUBlastX LINE_LOA 141051 141251 27 - . . scaffold1174 GLEAN mRNA 176989 177081 0.453368 - . ID=CGI_10026029; scaffold1174 TRF Tandem_Repeat 176989 177081 186 + . . scaffold1174 GLEAN mRNA 177756 177789 0.453368 - . ID=CGI_10026029; scaffold1174 TRF Tandem_Repeat 177756 177789 68 + . . scaffold1174 GLEAN mRNA 169463 170149 0.453368 - . ID=CGI_10026029; scaffold1174 WUBlastX LINE_L1 169463 170149 95 + . . scaffold1174 GLEAN mRNA 170160 170654 0.453368 - . ID=CGI_10026029; scaffold1174 WUBlastX LINE_L1-Tx1 170160 170654 108 + . . scaffold1174 GLEAN mRNA 169577 170143 0.453368 - . ID=CGI_10026029; scaffold1174 WUBlastX LINE_L1 169577 170143 307 + . . scaffold1174 GLEAN mRNA 170169 170567 0.453368 - . ID=CGI_10026029; scaffold1174 WUBlastX LINE_L1-Tx1 170169 170567 145 + . . scaffold1174 GLEAN mRNA 169577 170299 0.453368 - . ID=CGI_10026029; scaffold1174 WUBlastX LINE_L1 169577 170299 200 + . . scaffold1174 GLEAN mRNA 170760 171128 0.453368 - . ID=CGI_10026029; scaffold1174 WUBlastX LINE_L1-Tx1 170760 171128 47 + . . scaffold1174 GLEAN mRNA 171048 171233 0.453368 - . ID=CGI_10026029; scaffold1174 WUBlastX LINE_L1-Tx1 171048 171233 31 + . . scaffold1174 GLEAN mRNA 180283 180319 0.453368 - . ID=CGI_10026029; scaffold1174 TRF Tandem_Repeat 180283 180319 65 + . . scaffold1174 GLEAN mRNA 185967 186024 0.453368 - . ID=CGI_10026029; scaffold1174 TRF Tandem_Repeat 185967 186024 98 + . . scaffold1174 GLEAN mRNA 188020 188050 0.453368 - . ID=CGI_10026029; scaffold1174 TRF Tandem_Repeat 188020 188050 53 + . . scaffold1174 GLEAN mRNA 189971 190037 0.453368 - . ID=CGI_10026029; scaffold1174 TRF Tandem_Repeat 189971 190037 127 + . . scaffold1174 GLEAN mRNA 190214 190246 0.453368 - . ID=CGI_10026029; scaffold1174 TRF Tandem_Repeat 190214 190246 57 + . . scaffold1174 GLEAN mRNA 190913 190972 0.453368 - . ID=CGI_10026029; scaffold1174 TRF Tandem_Repeat 190913 190972 50 + . . scaffold1174 GLEAN mRNA 243840 243872 0.484872 - . ID=CGI_10026031; scaffold1174 TRF Tandem_Repeat 243840 243872 57 + . . scaffold1174 GLEAN mRNA 243872 243904 0.484872 - . ID=CGI_10026031; scaffold1174 TRF Tandem_Repeat 243872 243904 66 + . . scaffold1174 GLEAN mRNA 253947 253987 0.484872 - . ID=CGI_10026031; scaffold1174 WUBlastX LINE_RTE-BovB 253947 254405 39 - . . scaffold1174 GLEAN mRNA 312208 312255 0.651135 + . ID=CGI_10026033; scaffold1174 TRF Tandem_Repeat 312208 312255 96 + . . scaffold1174 GLEAN mRNA 331740 331783 0.947098 + . ID=CGI_10026034; scaffold1174 TRF Tandem_Repeat 331740 331783 88 + . . scaffold1174 GLEAN mRNA 356659 356854 1 - . ID=CGI_10026035; scaffold1174 TRF Tandem_Repeat 356659 356854 338 + . . scaffold1174 GLEAN mRNA 356659 356854 1 - . ID=CGI_10026035; scaffold1174 TRF Tandem_Repeat 356659 356854 346 + . . scaffold1174 GLEAN mRNA 379889 379923 0.988892 - . ID=CGI_10026036; scaffold1174 TRF Tandem_Repeat 379889 379923 63 + . . scaffold1174 GLEAN mRNA 405727 405764 0.889915 + . ID=CGI_10026037; scaffold1174 TRF Tandem_Repeat 405727 405764 76 + . . scaffold1174 GLEAN mRNA 424412 424450 1 - . ID=CGI_10026038; scaffold1174 TRF Tandem_Repeat 424412 424450 78 + . . scaffold1174 GLEAN mRNA 445276 445342 0.906 + . ID=CGI_10026041; scaffold1174 TRF Tandem_Repeat 445276 445342 71 + . . scaffold1174 GLEAN mRNA 465632 465659 0.340592 - . ID=CGI_10026043; scaffold1174 TRF Tandem_Repeat 465632 465659 56 + . . scaffold1174 GLEAN mRNA 469265 470052 0.340592 - . ID=CGI_10026043; scaffold1174 TRF Tandem_Repeat 469265 470052 490 + . . scaffold1174 GLEAN mRNA 470146 470334 0.340592 - . ID=CGI_10026043; scaffold1174 TRF Tandem_Repeat 470146 470334 155 + . . scaffold1174 GLEAN mRNA 470786 471884 0.340592 - . ID=CGI_10026043; scaffold1174 TRF Tandem_Repeat 470786 471955 455 + . . scaffold1174 GLEAN mRNA 520270 520300 0.999949 - . ID=CGI_10026049; scaffold1174 TRF Tandem_Repeat 520270 520300 53 + . . scaffold1174 GLEAN mRNA 520298 520330 0.999949 - . ID=CGI_10026049; scaffold1174 TRF Tandem_Repeat 520298 520330 66 + . . scaffold1174 GLEAN mRNA 521970 522008 0.999949 - . ID=CGI_10026049; scaffold1174 TRF Tandem_Repeat 521970 522008 78 + . . scaffold1174 GLEAN mRNA 526773 527082 0.999949 - . ID=CGI_10026049; scaffold1174 TRF Tandem_Repeat 526773 527082 530 + . . scaffold1174 GLEAN mRNA 557490 557545 0.999675 + . ID=CGI_10026051; scaffold1174 TRF Tandem_Repeat 557490 557545 94 + . . scaffold1174 GLEAN mRNA 570076 570121 0.607662 - . ID=CGI_10026052; scaffold1174 TRF Tandem_Repeat 570076 570121 76 + . . scaffold1174 GLEAN mRNA 570852 570882 0.607662 - . ID=CGI_10026052; scaffold1174 TRF Tandem_Repeat 570852 570882 62 + . . scaffold1174 GLEAN mRNA 586042 586082 1 - . ID=CGI_10026054; scaffold1174 TRF Tandem_Repeat 586042 586082 82 + . . scaffold1174 GLEAN mRNA 591630 591672 1 - . ID=CGI_10026055; scaffold1174 TRF Tandem_Repeat 591630 591672 86 + . . scaffold1174 GLEAN mRNA 598654 600073 0.448847 + . ID=CGI_10026056; scaffold1174 TRF Tandem_Repeat 598654 600073 2232 + . . scaffold1174 GLEAN mRNA 651068 651102 0.841346 - . ID=CGI_10026060; scaffold1174 TRF Tandem_Repeat 651068 651102 70 + . . scaffold1174 GLEAN mRNA 729955 730001 0.969124 - . ID=CGI_10026063; scaffold1174 TRF Tandem_Repeat 729955 730001 94 + . . scaffold1174 GLEAN mRNA 738505 738533 0.969124 - . ID=CGI_10026063; scaffold1174 TRF Tandem_Repeat 738505 738533 58 + . . scaffold1174 GLEAN mRNA 741007 741038 0.969124 - . ID=CGI_10026063; scaffold1174 TRF Tandem_Repeat 741007 741038 64 + . . scaffold1174 GLEAN mRNA 742685 742744 0.969124 - . ID=CGI_10026063; scaffold1174 TRF Tandem_Repeat 742685 742744 113 + . . scaffold1174 GLEAN mRNA 812998 813044 0.999538 + . ID=CGI_10026068; scaffold1174 TRF Tandem_Repeat 812998 813044 94 + . . scaffold1174 GLEAN mRNA 820703 820785 0.999538 + . ID=CGI_10026068; scaffold1174 TRF Tandem_Repeat 820703 820785 166 + . . scaffold1174 GLEAN mRNA 822430 822470 0.999538 + . ID=CGI_10026068; scaffold1174 TRF Tandem_Repeat 822430 822470 55 + . . scaffold1174 GLEAN mRNA 825332 825703 0.999538 + . ID=CGI_10026068; scaffold1174 TRF Tandem_Repeat 825332 825703 645 + . . scaffold1174 GLEAN mRNA 829836 829916 0.999538 + . ID=CGI_10026068; scaffold1174 TRF Tandem_Repeat 829836 829916 144 + . . scaffold1174 GLEAN mRNA 834285 834328 0.999538 + . ID=CGI_10026068; scaffold1174 TRF Tandem_Repeat 834285 834328 56 + . . scaffold1174 GLEAN mRNA 834296 834325 0.999538 + . ID=CGI_10026068; scaffold1174 TRF Tandem_Repeat 834296 834325 53 + . . scaffold1174 GLEAN mRNA 843709 843812 0.999538 + . ID=CGI_10026068; scaffold1174 TRF Tandem_Repeat 843709 843812 50 + . . scaffold1174 GLEAN mRNA 866190 866217 0.478729 - . ID=CGI_10026070; scaffold1174 TRF Tandem_Repeat 866190 866217 56 + . . scaffold1174 GLEAN mRNA 928574 928895 0.964473 + . ID=CGI_10026072; scaffold1174 TRF Tandem_Repeat 928574 928895 635 + . . scaffold1174 GLEAN mRNA 932373 932460 0.964473 + . ID=CGI_10026072; scaffold1174 TRF Tandem_Repeat 932373 932460 126 + . . scaffold1174 GLEAN mRNA 928914 929780 0.964473 + . ID=CGI_10026072; scaffold1174 WUBlastX DNA_IS4EU 928914 929780 180 - . . scaffold1174 GLEAN mRNA 930297 930782 0.964473 + . ID=CGI_10026072; scaffold1174 WUBlastX DNA_IS4EU 930297 930782 203 - . . scaffold1174 GLEAN mRNA 928950 929675 0.964473 + . ID=CGI_10026072; scaffold1174 WUBlastX DNA_Kolobok-IS4 928950 929675 235 - . . scaffold1174 GLEAN mRNA 929658 930080 0.964473 + . ID=CGI_10026072; scaffold1174 WUBlastX DNA_IS4EU 929658 930080 44 - . . scaffold1174 GLEAN mRNA 930336 931175 0.964473 + . ID=CGI_10026072; scaffold1174 WUBlastX DNA_Kolobok-Hyd 930336 931175 185 - . . scaffold1174 GLEAN mRNA 976662 976711 0.301625 + . ID=CGI_10026076; scaffold1174 TRF Tandem_Repeat 976662 976711 100 + . . scaffold1174 GLEAN mRNA 978632 978892 0.301625 + . ID=CGI_10026076; scaffold1174 WUBlastX DNA_Harbinger 978632 978892 203 - . . scaffold1174 GLEAN mRNA 979433 979645 0.301625 + . ID=CGI_10026076; scaffold1174 WUBlastX DNA_Harbinger 979433 979645 163 - . . scaffold1174 GLEAN mRNA 976904 977128 0.301625 + . ID=CGI_10026076; scaffold1174 WUBlastX DNA_Harbinger 976904 977128 51 - . . scaffold1174 GLEAN mRNA 976904 977173 0.301625 + . ID=CGI_10026076; scaffold1174 WUBlastX DNA_Harbinger 976904 977173 43 - . . scaffold1174 GLEAN mRNA 979421 979681 0.301625 + . ID=CGI_10026076; scaffold1174 WUBlastX DNA_Harbinger 979421 979681 145 - . . scaffold1174 GLEAN mRNA 975569 975712 0.301625 + . ID=CGI_10026076; scaffold1174 WUBlastX DNA_Harbinger 975569 975712 77 + . . scaffold1174 GLEAN mRNA 975896 975979 0.301625 + . ID=CGI_10026076; scaffold1174 WUBlastX DNA_Harbinger 975896 975979 24 + . . scaffold1174 GLEAN mRNA 975554 975730 0.301625 + . ID=CGI_10026076; scaffold1174 WUBlastX DNA_Harbinger 975554 975730 57 + . . scaffold1174 GLEAN mRNA 1005658 1005714 0.422732 - . ID=CGI_10026078; scaffold1174 TRF Tandem_Repeat 1005658 1005714 114 + . . scaffold1174 GLEAN mRNA 1075123 1075275 0.506907 + . ID=CGI_10026080; scaffold1174 WUBlastX DNA_hAT-Blackja 1075123 1075275 22 - . . scaffold1174 GLEAN mRNA 1075726 1075941 0.506907 + . ID=CGI_10026080; scaffold1174 WUBlastX DNA_hAT-Blackja 1075726 1075941 93 - . . scaffold1174 GLEAN mRNA 1076466 1076669 0.506907 + . ID=CGI_10026080; scaffold1174 WUBlastX DNA_hAT-Blackja 1076466 1076669 28 - . . scaffold1174 GLEAN mRNA 1072564 1072608 0.506907 + . ID=CGI_10026080; scaffold1174 WUBlastX DNA_MuDR 1072363 1072608 32 + . . scaffold1174 GLEAN mRNA 1074693 1074815 0.506907 + . ID=CGI_10026080; scaffold1174 WUBlastX DNA_hAT-Blackja 1074693 1074815 55 - . . scaffold1174 GLEAN mRNA 1076124 1076351 0.506907 + . ID=CGI_10026080; scaffold1174 WUBlastX DNA_hAT-Blackja 1076124 1076351 86 - . . scaffold1174 GLEAN mRNA 1091543 1091689 0.548358 + . ID=CGI_10026081; scaffold1174 WUBlastX LTR_Pao 1091543 1091689 68 + . . scaffold1174 GLEAN mRNA 1089703 1090707 0.548358 + . ID=CGI_10026081; scaffold1174 WUBlastX DNA_TcMar-Fot1 1089703 1090707 42 + . . scaffold1174 GLEAN mRNA 1089703 1090089 0.548358 + . ID=CGI_10026081; scaffold1174 WUBlastX DNA_TcMar-Fot1 1089703 1090089 217 + . . scaffold1174 GLEAN mRNA 1088994 1089671 0.548358 + . ID=CGI_10026081; scaffold1174 WUBlastX DNA_TcMar-Fot1 1088994 1089671 322 + . . scaffold1174 GLEAN mRNA 1089685 1090149 0.548358 + . ID=CGI_10026081; scaffold1174 WUBlastX DNA_TcMar-Fot1 1089685 1090149 154 + . . scaffold1174 GLEAN mRNA 1082467 1082823 0.548358 + . ID=CGI_10026081; scaffold1174 WUBlastX DNA_Kolobok-Hyd 1082467 1082823 66 + . . scaffold204 GLEAN mRNA 38035 38078 0.996606 - . ID=CGI_10026088; scaffold204 TRF Tandem_Repeat 38035 38078 88 + . . scaffold204 GLEAN mRNA 43600 43782 0.996606 - . ID=CGI_10026088; scaffold204 WUBlastX DNA_TcMar-Marin 43600 43782 54 + . . scaffold204 GLEAN mRNA 72021 72274 0.806649 - . ID=CGI_10026091; scaffold204 TRF Tandem_Repeat 72021 72274 276 + . . scaffold204 GLEAN mRNA 75989 76932 0.806649 - . ID=CGI_10026091; scaffold204 TRF Tandem_Repeat 75989 76932 1656 + . . scaffold204 GLEAN mRNA 77763 77987 0.806649 - . ID=CGI_10026091; scaffold204 TRF Tandem_Repeat 77763 77987 369 + . . scaffold204 GLEAN mRNA 87612 88197 0.999675 + . ID=CGI_10026092; scaffold204 TRF Tandem_Repeat 87612 88197 947 + . . scaffold204 GLEAN mRNA 112169 112223 0.991044 - . ID=CGI_10026094; scaffold204 TRF Tandem_Repeat 112169 112223 103 + . . scaffold204 GLEAN mRNA 117197 117364 0.991044 - . ID=CGI_10026094; scaffold204 WUBlastX LTR_Gypsy 117197 117364 23 - . . scaffold204 GLEAN mRNA 121296 121334 0.929911 - . ID=CGI_10026095; scaffold204 TRF Tandem_Repeat 121296 121334 71 + . . scaffold204 GLEAN mRNA 138972 139017 0.378854 + . ID=CGI_10026096; scaffold204 TRF Tandem_Repeat 138972 139017 92 + . . scaffold204 GLEAN mRNA 142487 142612 0.378854 + . ID=CGI_10026096; scaffold204 TRF Tandem_Repeat 142487 142612 146 + . . scaffold204 GLEAN mRNA 150262 150403 0.378854 + . ID=CGI_10026096; scaffold204 TRF Tandem_Repeat 150262 150403 106 + . . scaffold204 GLEAN mRNA 150452 150612 0.378854 + . ID=CGI_10026096; scaffold204 TRF Tandem_Repeat 150452 150612 135 + . . scaffold204 GLEAN mRNA 150470 150620 0.378854 + . ID=CGI_10026096; scaffold204 TRF Tandem_Repeat 150470 150620 144 + . . scaffold204 GLEAN mRNA 150712 150805 0.378854 + . ID=CGI_10026096; scaffold204 TRF Tandem_Repeat 150712 150805 91 + . . scaffold204 GLEAN mRNA 152361 152411 0.378854 + . ID=CGI_10026096; scaffold204 TRF Tandem_Repeat 152361 152411 102 + . . scaffold204 GLEAN mRNA 138972 139017 1 - . ID=CGI_10026097; scaffold204 TRF Tandem_Repeat 138972 139017 92 + . . scaffold204 GLEAN mRNA 184477 185082 0.995871 + . ID=CGI_10026098; scaffold204 TRF Tandem_Repeat 184477 185082 408 + . . scaffold204 GLEAN mRNA 189773 189835 0.995871 + . ID=CGI_10026098; scaffold204 TRF Tandem_Repeat 189773 189835 126 + . . scaffold204 GLEAN mRNA 284217 284257 0.270192 - . ID=CGI_10026102; scaffold204 TRF Tandem_Repeat 284217 284257 50 + . . scaffold204 GLEAN mRNA 288547 288598 0.270192 - . ID=CGI_10026102; scaffold204 TRF Tandem_Repeat 288547 288598 95 + . . scaffold204 GLEAN mRNA 292143 292196 0.270192 - . ID=CGI_10026102; scaffold204 TRF Tandem_Repeat 292143 292196 108 + . . scaffold204 GLEAN mRNA 294211 294263 0.270192 - . ID=CGI_10026102; scaffold204 TRF Tandem_Repeat 294211 294263 97 + . . scaffold204 GLEAN mRNA 294211 294285 0.270192 - . ID=CGI_10026102; scaffold204 TRF Tandem_Repeat 294211 294285 87 + . . scaffold204 GLEAN mRNA 299963 300190 0.270192 - . ID=CGI_10026102; scaffold204 WUBlastX LTR_Ngaro 299963 300190 63 + . . scaffold204 GLEAN mRNA 300005 300184 0.270192 - . ID=CGI_10026102; scaffold204 WUBlastX LTR_Ngaro 300005 300184 86 + . . scaffold204 GLEAN mRNA 300059 300184 0.270192 - . ID=CGI_10026102; scaffold204 WUBlastX LTR_Ngaro 300059 300184 88 + . . scaffold204 GLEAN mRNA 321505 321684 0.610548 - . ID=CGI_10026103; scaffold204 WUBlastX LINE_L2 321505 321684 54 + . . scaffold204 GLEAN mRNA 320821 320964 0.610548 - . ID=CGI_10026103; scaffold204 WUBlastX LINE_CR1-L2 320821 320964 26 + . . scaffold204 GLEAN mRNA 320815 321213 0.610548 - . ID=CGI_10026103; scaffold204 WUBlastX LINE_CR1-L2 320815 321213 26 + . . scaffold204 GLEAN mRNA 405621 405856 0.339936 + . ID=CGI_10026106; scaffold204 TRF Tandem_Repeat 405621 405856 190 + . . scaffold204 GLEAN mRNA 405646 405822 0.339936 + . ID=CGI_10026106; scaffold204 TRF Tandem_Repeat 405646 405822 151 + . . scaffold204 GLEAN mRNA 399826 400074 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX LINE_CR1-L2 399826 400074 47 + . . scaffold204 GLEAN mRNA 399883 400065 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX LINE_CR1-L2 399883 400065 73 + . . scaffold204 GLEAN mRNA 394288 394572 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX DNA_Kolobok-Hyd 394288 394572 25 + . . scaffold204 GLEAN mRNA 394336 394725 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX DNA_Kolobok-Hyd 394336 394725 23 + . . scaffold204 GLEAN mRNA 395170 395295 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX DNA_Kolobok-Hyd 395170 395295 31 + . . scaffold204 GLEAN mRNA 395453 395677 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX DNA_Kolobok-Hyd 395453 395677 27 + . . scaffold204 GLEAN mRNA 407459 407782 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX LINE_CR1 407459 407782 22 - . . scaffold204 GLEAN mRNA 395227 395301 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX DNA_Kolobok-Hyd 395227 395301 42 + . . scaffold204 GLEAN mRNA 414185 414334 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX DNA_Harbinger 414185 414334 66 + . . scaffold204 GLEAN mRNA 413254 413697 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX DNA_Harbinger 413254 413697 178 + . . scaffold204 GLEAN mRNA 413816 414070 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX DNA_Harbinger 413816 414070 217 + . . scaffold204 GLEAN mRNA 411588 411800 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX DNA_Harbinger 411588 411800 91 + . . scaffold204 GLEAN mRNA 414185 414403 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX DNA_Harbinger 414185 414403 49 + . . scaffold204 GLEAN mRNA 413873 414139 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX DNA_Harbinger 413873 414139 34 + . . scaffold204 GLEAN mRNA 422715 423035 0.478476 - . ID=CGI_10026107; scaffold204 TRF Tandem_Repeat 422715 423035 198 + . . scaffold204 GLEAN mRNA 422715 423014 0.478476 - . ID=CGI_10026107; scaffold204 TRF Tandem_Repeat 422715 423014 238 + . . scaffold204 GLEAN mRNA 422715 423020 0.478476 - . ID=CGI_10026107; scaffold204 TRF Tandem_Repeat 422715 423020 230 + . . scaffold204 GLEAN mRNA 423599 423870 0.478476 - . ID=CGI_10026107; scaffold204 TRF Tandem_Repeat 423599 423870 436 + . . scaffold204 GLEAN mRNA 423590 423870 0.478476 - . ID=CGI_10026107; scaffold204 TRF Tandem_Repeat 423590 423870 303 + . . scaffold204 GLEAN mRNA 427844 431401 0.478476 - . ID=CGI_10026107; scaffold204 WUBlastX LINE_L1-Tx1 427844 431401 1118 - . . scaffold204 GLEAN mRNA 489039 489369 0.999351 - . ID=CGI_10026114; scaffold204 TRF Tandem_Repeat 489039 489369 100 + . . scaffold204 GLEAN mRNA 489039 489394 0.999351 - . ID=CGI_10026114; scaffold204 TRF Tandem_Repeat 489039 489394 256 + . . scaffold204 GLEAN mRNA 489063 489394 0.999351 - . ID=CGI_10026114; scaffold204 TRF Tandem_Repeat 489063 489394 243 + . . scaffold204 GLEAN mRNA 499733 499763 0.519605 - . ID=CGI_10026115; scaffold204 TRF Tandem_Repeat 499733 499763 62 + . . scaffold204 GLEAN mRNA 519377 519674 1 - . ID=CGI_10026116; scaffold204 TRF Tandem_Repeat 519377 519674 463 + . . scaffold204 GLEAN mRNA 561247 561351 0.999351 + . ID=CGI_10026117; scaffold204 WUBlastX DNA_Crypton 561247 561351 22 + . . scaffold204 GLEAN mRNA 561539 562402 0.999351 + . ID=CGI_10026117; scaffold204 WUBlastX DNA_Crypton 561539 562402 153 + . . scaffold204 GLEAN mRNA 580322 580412 0.209879 + . ID=CGI_10026118; scaffold204 TRF Tandem_Repeat 580322 580412 98 + . . scaffold204 GLEAN mRNA 580650 580688 0.209879 + . ID=CGI_10026118; scaffold204 TRF Tandem_Repeat 580650 580688 78 + . . scaffold204 GLEAN mRNA 577442 577891 0.209879 + . ID=CGI_10026118; scaffold204 WUBlastX DNA_TcMar-ISRm1 577442 577891 40 + . . scaffold204 GLEAN mRNA 595826 596782 0.209879 + . ID=CGI_10026118; scaffold204 WUBlastX DNA_Crypton 595826 596782 109 + . . scaffold204 GLEAN mRNA 609341 609628 0.480742 + . ID=CGI_10026119; scaffold204 WUBlastX DNA_PiggyBac 609341 609628 23 + . . scaffold204 GLEAN mRNA 626281 627054 0.544727 - . ID=CGI_10026120; scaffold204 TRF Tandem_Repeat 626281 627054 1110 + . . scaffold204 GLEAN mRNA 638346 638654 1 + . ID=CGI_10026121; scaffold204 WUBlastX LINE_L1-Tx1 638346 638654 59 - . . scaffold204 GLEAN mRNA 638082 638684 1 + . ID=CGI_10026121; scaffold204 WUBlastX LINE_L1-Tx1 638082 638684 43 - . . scaffold204 GLEAN mRNA 653523 653579 1 - . ID=CGI_10026123; scaffold204 TRF Tandem_Repeat 653523 653579 114 + . . scaffold204 GLEAN mRNA 683931 684009 0.724851 - . ID=CGI_10026125; scaffold204 TRF Tandem_Repeat 683931 684009 149 + . . scaffold204 GLEAN mRNA 684176 684223 0.724851 - . ID=CGI_10026125; scaffold204 TRF Tandem_Repeat 684176 684223 61 + . . scaffold204 GLEAN mRNA 684176 684223 0.724851 - . ID=CGI_10026125; scaffold204 TRF Tandem_Repeat 684176 684223 55 + . . scaffold204 GLEAN mRNA 697311 697528 0.998862 + . ID=CGI_10026126; scaffold204 TRF Tandem_Repeat 697311 697528 147 + . . scaffold204 GLEAN mRNA 700938 700979 0.999896 + . ID=CGI_10026127; scaffold204 TRF Tandem_Repeat 700938 700979 84 + . . scaffold204 GLEAN mRNA 704025 704061 0.999896 + . ID=CGI_10026127; scaffold204 TRF Tandem_Repeat 704025 704061 74 + . . scaffold204 GLEAN mRNA 711622 711676 0.999896 + . ID=CGI_10026127; scaffold204 TRF Tandem_Repeat 711622 711676 60 + . . scaffold204 GLEAN mRNA 713051 713085 0.999896 + . ID=CGI_10026127; scaffold204 TRF Tandem_Repeat 713051 713085 70 + . . scaffold204 GLEAN mRNA 775334 775385 0.998101 + . ID=CGI_10026130; scaffold204 TRF Tandem_Repeat 775334 775385 104 + . . scaffold204 GLEAN mRNA 819949 819987 0.552692 + . ID=CGI_10026134; scaffold204 TRF Tandem_Repeat 819949 819987 78 + . . scaffold204 GLEAN mRNA 820110 820137 0.552692 + . ID=CGI_10026134; scaffold204 TRF Tandem_Repeat 820110 820137 56 + . . scaffold204 GLEAN mRNA 820137 820164 0.552692 + . ID=CGI_10026134; scaffold204 TRF Tandem_Repeat 820137 820164 56 + . . scaffold204 GLEAN mRNA 821475 821819 0.552692 + . ID=CGI_10026134; scaffold204 WUBlastX LINE_L1-Tx1 821475 821819 44 - . . scaffold204 GLEAN mRNA 821346 821411 0.552692 + . ID=CGI_10026134; scaffold204 WUBlastX LINE_L1-Tx1 821346 821411 27 - . . scaffold204 GLEAN mRNA 821427 821726 0.552692 + . ID=CGI_10026134; scaffold204 WUBlastX LINE_L1-Tx1 821427 821726 26 - . . scaffold204 GLEAN mRNA 821955 822113 0.552692 + . ID=CGI_10026134; scaffold204 WUBlastX LINE_L1-Tx1 821955 822113 23 - . . scaffold204 GLEAN mRNA 822109 822399 0.552692 + . ID=CGI_10026134; scaffold204 WUBlastX LINE_L1-Tx1 822109 822399 69 - . . scaffold204 GLEAN mRNA 834608 834677 0.757143 + . ID=CGI_10026135; scaffold204 TRF Tandem_Repeat 834608 834677 86 + . . scaffold204 GLEAN mRNA 834607 834677 0.757143 + . ID=CGI_10026135; scaffold204 TRF Tandem_Repeat 834607 834677 106 + . . scaffold204 GLEAN mRNA 837984 838077 0.757143 + . ID=CGI_10026135; scaffold204 TRF Tandem_Repeat 837984 838077 100 + . . scaffold204 GLEAN mRNA 850064 850405 0.756652 + . ID=CGI_10026136; scaffold204 WUBlastX LINE_CR1 850064 850405 113 + . . scaffold204 GLEAN mRNA 849759 850046 0.756652 + . ID=CGI_10026136; scaffold204 WUBlastX LINE_CR1 849759 850046 81 + . . scaffold204 GLEAN mRNA 849993 850058 0.756652 + . ID=CGI_10026136; scaffold204 WUBlastX LINE_CR1 849993 850058 30 + . . scaffold204 GLEAN mRNA 850982 851068 0.756652 + . ID=CGI_10026136; scaffold204 WUBlastX DNA_Harbinger 850982 851068 26 + . . scaffold204 GLEAN mRNA 842437 842715 0.756652 + . ID=CGI_10026136; scaffold204 WUBlastX LINE_Penelope 842437 842715 58 + . . scaffold204 GLEAN mRNA 850752 850844 0.756652 + . ID=CGI_10026136; scaffold204 WUBlastX DNA_Harbinger 850752 850844 52 + . . scaffold204 GLEAN mRNA 851191 851376 0.756652 + . ID=CGI_10026136; scaffold204 WUBlastX DNA_Harbinger 851191 851376 89 + . . scaffold204 GLEAN mRNA 842437 842658 0.756652 + . ID=CGI_10026136; scaffold204 WUBlastX LINE_Penelope 842437 842658 70 + . . scaffold204 GLEAN mRNA 842437 842769 0.756652 + . ID=CGI_10026136; scaffold204 WUBlastX LINE_Penelope 842437 842769 47 + . . scaffold204 GLEAN mRNA 853262 853729 0.756652 + . ID=CGI_10026136; scaffold204 WUBlastX DNA_Kolobok-Hyd 853262 853729 28 - . . scaffold204 GLEAN mRNA 915167 915326 0.530486 + . ID=CGI_10026137; scaffold204 TRF Tandem_Repeat 915167 915326 169 + . . scaffold204 GLEAN mRNA 915397 915537 0.530486 + . ID=CGI_10026137; scaffold204 TRF Tandem_Repeat 915397 915537 104 + . . scaffold204 GLEAN mRNA 936535 936741 0.911804 + . ID=CGI_10026139; scaffold204 WUBlastX DNA_Chapaev 936535 936741 24 + . . scaffold204 GLEAN mRNA 967309 967352 0.940726 + . ID=CGI_10026141; scaffold204 TRF Tandem_Repeat 967309 967352 61 + . . scaffold204 GLEAN mRNA 967310 967359 0.940726 + . ID=CGI_10026141; scaffold204 TRF Tandem_Repeat 967310 967359 55 + . . scaffold204 GLEAN mRNA 967383 968508 0.940726 + . ID=CGI_10026141; scaffold204 TRF Tandem_Repeat 967383 968508 1682 + . . scaffold204 GLEAN mRNA 997788 997817 0.34759 - . ID=CGI_10026142; scaffold204 TRF Tandem_Repeat 997788 997817 51 + . . scaffold204 GLEAN mRNA 1014944 1015024 0.34759 - . ID=CGI_10026142; scaffold204 TRF Tandem_Repeat 1014944 1015024 155 + . . scaffold204 GLEAN mRNA 1010967 1011944 0.34759 - . ID=CGI_10026142; scaffold204 WUBlastX LINE_L1-Tx1 1010967 1011944 494 - . . scaffold204 GLEAN mRNA 1012266 1012313 0.34759 - . ID=CGI_10026142; scaffold204 WUBlastX LINE_I 1012266 1012313 21 - . . scaffold204 GLEAN mRNA 1026201 1026251 0.34759 - . ID=CGI_10026142; scaffold204 TRF Tandem_Repeat 1026201 1026251 102 + . . scaffold204 GLEAN mRNA 1027123 1027185 0.34759 - . ID=CGI_10026142; scaffold204 TRF Tandem_Repeat 1027123 1027185 126 + . . scaffold204 GLEAN mRNA 1028602 1028643 0.34759 - . ID=CGI_10026142; scaffold204 TRF Tandem_Repeat 1028602 1028643 50 + . . scaffold204 GLEAN mRNA 1030577 1030642 0.34759 - . ID=CGI_10026142; scaffold204 TRF Tandem_Repeat 1030577 1030642 132 + . . scaffold1154 GLEAN mRNA 10159 10186 0.999999 - . ID=CGI_10026147; scaffold1154 TRF Tandem_Repeat 10159 10186 56 + . . scaffold1154 GLEAN mRNA 65475 65912 0.77656 + . ID=CGI_10026149; scaffold1154 WUBlastX DNA_Kolobok-Hyd 65475 65912 36 + . . scaffold1154 GLEAN mRNA 88760 88816 0.722376 + . ID=CGI_10026153; scaffold1154 TRF Tandem_Repeat 88760 88816 80 + . . scaffold1154 GLEAN mRNA 88759 88816 0.722376 + . ID=CGI_10026153; scaffold1154 TRF Tandem_Repeat 88759 88816 64 + . . scaffold1154 GLEAN mRNA 88985 89812 0.722376 + . ID=CGI_10026153; scaffold1154 TRF Tandem_Repeat 88985 89812 1128 + . . scaffold1154 GLEAN mRNA 92844 97676 0.722376 + . ID=CGI_10026153; scaffold1154 TRF Tandem_Repeat 92844 97676 6446 + . . scaffold1154 GLEAN mRNA 133861 134606 0.933838 - . ID=CGI_10026155; scaffold1154 TRF Tandem_Repeat 133861 134606 759 + . . scaffold1154 GLEAN mRNA 173706 174545 0.933838 - . ID=CGI_10026155; scaffold1154 WUBlastX DNA_PiggyBac 173706 174545 333 + . . scaffold1154 GLEAN mRNA 173841 175463 0.933838 - . ID=CGI_10026155; scaffold1154 WUBlastX DNA_PiggyBac 173841 175463 765 + . . scaffold1154 GLEAN mRNA 221585 221809 0.517509 - . ID=CGI_10026156; scaffold1154 WUBlastX LINE_RTE-X 221585 221809 53 + . . scaffold1154 GLEAN mRNA 245366 245403 0.991043 + . ID=CGI_10026159; scaffold1154 TRF Tandem_Repeat 245366 245403 76 + . . scaffold1154 GLEAN mRNA 300308 300589 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX DNA_Kolobok-IS4 300308 300589 69 - . . scaffold1154 GLEAN mRNA 307901 309988 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX DNA_P 307901 309988 925 - . . scaffold1154 GLEAN mRNA 323767 323795 0.0862783 - . ID=CGI_10026162; scaffold1154 TRF Tandem_Repeat 323767 323795 58 + . . scaffold1154 GLEAN mRNA 329125 329466 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 329125 329466 167 + . . scaffold1154 GLEAN mRNA 328382 329125 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 328382 329125 125 + . . scaffold1154 GLEAN mRNA 327841 328341 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 327841 328341 125 + . . scaffold1154 GLEAN mRNA 328616 329119 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 328616 329119 330 + . . scaffold1154 GLEAN mRNA 329125 329550 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 329125 329550 147 + . . scaffold1154 GLEAN mRNA 329943 330296 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 329943 330296 152 + . . scaffold1154 GLEAN mRNA 328523 329119 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 328523 329119 208 + . . scaffold1154 GLEAN mRNA 330778 331749 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 330778 331749 514 + . . scaffold1154 GLEAN mRNA 328664 329947 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX LTR_DIRS 328664 329947 131 + . . scaffold1154 GLEAN mRNA 374636 374719 0.544657 - . ID=CGI_10026164; scaffold1154 TRF Tandem_Repeat 374636 374719 168 + . . scaffold1154 GLEAN mRNA 368480 368851 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368480 368851 108 + . . scaffold1154 GLEAN mRNA 366212 366556 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 366212 366556 126 + . . scaffold1154 GLEAN mRNA 366788 367216 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_DIRS 366788 367216 26 + . . scaffold1154 GLEAN mRNA 368364 368459 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368364 368459 37 + . . scaffold1154 GLEAN mRNA 368833 369360 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368833 369360 247 + . . scaffold1154 GLEAN mRNA 368379 368477 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368379 368477 25 + . . scaffold1154 GLEAN mRNA 368737 369360 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 368737 369360 187 + . . scaffold1154 GLEAN mRNA 366896 368362 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Ngaro 366896 368362 691 + . . scaffold1154 GLEAN mRNA 369732 370094 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LINE_RTE-X 369732 370094 79 + . . scaffold1154 GLEAN mRNA 368480 368851 0.558383 + . ID=CGI_10026165; scaffold1154 WUBlastX LTR_Ngaro 368480 368851 108 + . . scaffold1154 GLEAN mRNA 366212 366556 0.558383 + . ID=CGI_10026165; scaffold1154 WUBlastX LTR_Ngaro 366212 366556 126 + . . scaffold1154 GLEAN mRNA 366788 367216 0.558383 + . ID=CGI_10026165; scaffold1154 WUBlastX LTR_DIRS 366788 367216 26 + . . scaffold1154 GLEAN mRNA 368364 368459 0.558383 + . ID=CGI_10026165; scaffold1154 WUBlastX LTR_Ngaro 368364 368459 37 + . . scaffold1154 GLEAN mRNA 368833 369360 0.558383 + . ID=CGI_10026165; scaffold1154 WUBlastX LTR_Ngaro 368833 369360 247 + . . scaffold1154 GLEAN mRNA 368379 368477 0.558383 + . ID=CGI_10026165; scaffold1154 WUBlastX LTR_Ngaro 368379 368477 25 + . . scaffold1154 GLEAN mRNA 368737 369360 0.558383 + . ID=CGI_10026165; scaffold1154 WUBlastX LTR_Ngaro 368737 369360 187 + . . scaffold1154 GLEAN mRNA 366896 368362 0.558383 + . ID=CGI_10026165; scaffold1154 WUBlastX LTR_Ngaro 366896 368362 691 + . . scaffold1154 GLEAN mRNA 369732 369978 0.558383 + . ID=CGI_10026165; scaffold1154 WUBlastX LINE_RTE-X 369732 370094 79 + . . scaffold1154 GLEAN mRNA 401284 401529 0.774692 - . ID=CGI_10026168; scaffold1154 WUBlastX DNA_MuDR 401284 401529 67 - . . scaffold1154 GLEAN mRNA 403774 404304 0.774692 - . ID=CGI_10026168; scaffold1154 WUBlastX DNA_Harbinger 403774 404304 220 + . . scaffold1154 GLEAN mRNA 401284 401583 0.774692 - . ID=CGI_10026168; scaffold1154 WUBlastX DNA_MuDR 401284 401583 39 - . . scaffold1154 GLEAN mRNA 400744 400845 0.774692 - . ID=CGI_10026168; scaffold1154 WUBlastX DNA_MuDR 400744 400845 33 - . . scaffold1154 GLEAN mRNA 403783 404427 0.774692 - . ID=CGI_10026168; scaffold1154 WUBlastX DNA_Harbinger 403783 404427 192 + . . scaffold1154 GLEAN mRNA 400669 400827 0.774692 - . ID=CGI_10026168; scaffold1154 WUBlastX DNA_MuDR 400618 400827 20 - . . scaffold1154 GLEAN mRNA 424356 424403 0.998192 - . ID=CGI_10026171; scaffold1154 TRF Tandem_Repeat 424356 424403 64 + . . scaffold1154 GLEAN mRNA 463339 463371 0.558395 - . ID=CGI_10026172; scaffold1154 TRF Tandem_Repeat 463339 463371 66 + . . scaffold1154 GLEAN mRNA 463333 463387 0.558395 - . ID=CGI_10026172; scaffold1154 TRF Tandem_Repeat 463333 463387 58 + . . scaffold1154 GLEAN mRNA 511412 511575 0.998985 + . ID=CGI_10026174; scaffold1154 TRF Tandem_Repeat 511412 511575 310 + . . scaffold1154 GLEAN mRNA 511966 512548 0.998985 + . ID=CGI_10026174; scaffold1154 TRF Tandem_Repeat 511966 512548 932 + . . scaffold1154 GLEAN mRNA 516432 516891 0.998985 + . ID=CGI_10026174; scaffold1154 TRF Tandem_Repeat 516432 516891 773 + . . scaffold1154 GLEAN mRNA 531250 531293 1 - . ID=CGI_10026175; scaffold1154 TRF Tandem_Repeat 531250 531293 88 + . . scaffold1154 GLEAN mRNA 531291 531322 1 - . ID=CGI_10026175; scaffold1154 TRF Tandem_Repeat 531291 531322 64 + . . scaffold1154 GLEAN mRNA 594136 594173 0.191782 - . ID=CGI_10026178; scaffold1154 TRF Tandem_Repeat 594136 594173 51 + . . scaffold1154 GLEAN mRNA 597024 597085 0.191782 - . ID=CGI_10026178; scaffold1154 TRF Tandem_Repeat 597024 597085 67 + . . scaffold1154 GLEAN mRNA 598806 598843 0.191782 - . ID=CGI_10026178; scaffold1154 TRF Tandem_Repeat 598806 598843 51 + . . scaffold1154 GLEAN mRNA 599013 600183 0.191782 - . ID=CGI_10026178; scaffold1154 TRF Tandem_Repeat 599013 600183 1814 + . . scaffold1154 GLEAN mRNA 607351 607392 0.191782 - . ID=CGI_10026178; scaffold1154 TRF Tandem_Repeat 607351 607392 61 + . . scaffold1154 GLEAN mRNA 625272 625329 0.191782 - . ID=CGI_10026178; scaffold1154 TRF Tandem_Repeat 625272 625329 82 + . . scaffold1154 GLEAN mRNA 625273 625329 0.191782 - . ID=CGI_10026178; scaffold1154 TRF Tandem_Repeat 625273 625329 62 + . . scaffold1154 GLEAN mRNA 633976 634343 0.191782 - . ID=CGI_10026178; scaffold1154 TRF Tandem_Repeat 633976 634343 529 + . . scaffold1154 GLEAN mRNA 632783 633778 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 632783 633778 488 - . . scaffold1154 GLEAN mRNA 635605 636108 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 635605 636108 163 - . . scaffold1154 GLEAN mRNA 634460 635167 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 634460 635167 347 - . . scaffold1154 GLEAN mRNA 635166 635705 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 635166 635705 119 - . . scaffold1154 GLEAN mRNA 635716 636096 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 635716 636096 226 - . . scaffold1154 GLEAN mRNA 636529 637512 0.191782 - . ID=CGI_10026178; scaffold1154 WUBlastX LTR_DIRS 636529 637512 160 - . . scaffold1154 GLEAN mRNA 625272 625329 0.593391 + . ID=CGI_10026180; scaffold1154 TRF Tandem_Repeat 625272 625329 82 + . . scaffold1154 GLEAN mRNA 625273 625329 0.593391 + . ID=CGI_10026180; scaffold1154 TRF Tandem_Repeat 625273 625329 62 + . . scaffold1154 GLEAN mRNA 633976 634343 0.593391 + . ID=CGI_10026180; scaffold1154 TRF Tandem_Repeat 633976 634343 529 + . . scaffold1154 GLEAN mRNA 632783 633778 0.593391 + . ID=CGI_10026180; scaffold1154 WUBlastX LTR_DIRS 632783 633778 488 - . . scaffold1154 GLEAN mRNA 635605 636108 0.593391 + . ID=CGI_10026180; scaffold1154 WUBlastX LTR_DIRS 635605 636108 163 - . . scaffold1154 GLEAN mRNA 634460 635167 0.593391 + . ID=CGI_10026180; scaffold1154 WUBlastX LTR_DIRS 634460 635167 347 - . . scaffold1154 GLEAN mRNA 635166 635705 0.593391 + . ID=CGI_10026180; scaffold1154 WUBlastX LTR_DIRS 635166 635705 119 - . . scaffold1154 GLEAN mRNA 635716 636096 0.593391 + . ID=CGI_10026180; scaffold1154 WUBlastX LTR_DIRS 635716 636096 226 - . . scaffold1154 GLEAN mRNA 636529 637512 0.593391 + . ID=CGI_10026180; scaffold1154 WUBlastX LTR_DIRS 636529 637512 160 - . . scaffold1154 GLEAN mRNA 667011 668010 0.695104 - . ID=CGI_10026182; scaffold1154 TRF Tandem_Repeat 667011 668010 1334 + . . scaffold1154 GLEAN mRNA 667011 668010 0.695104 - . ID=CGI_10026182; scaffold1154 TRF Tandem_Repeat 667011 668010 1334 + . . scaffold1154 GLEAN mRNA 667832 667935 0.695104 - . ID=CGI_10026182; scaffold1154 TRF Tandem_Repeat 667832 667935 80 + . . scaffold1154 GLEAN mRNA 663186 663467 0.695104 - . ID=CGI_10026182; scaffold1154 WUBlastX LINE_RTE-X 663186 663467 25 - . . scaffold1154 GLEAN mRNA 726619 726678 0.999027 - . ID=CGI_10026183; scaffold1154 TRF Tandem_Repeat 726619 726678 64 + . . scaffold1154 GLEAN mRNA 726841 727021 0.999027 - . ID=CGI_10026183; scaffold1154 TRF Tandem_Repeat 726841 727021 118 + . . scaffold1154 GLEAN mRNA 735167 735214 0.999027 - . ID=CGI_10026183; scaffold1154 TRF Tandem_Repeat 735167 735214 96 + . . scaffold1154 GLEAN mRNA 763363 763477 0.753252 - . ID=CGI_10026186; scaffold1154 TRF Tandem_Repeat 763363 763477 126 + . . scaffold1154 GLEAN mRNA 777659 777707 0.208391 - . ID=CGI_10026187; scaffold1154 TRF Tandem_Repeat 777659 777707 98 + . . scaffold1154 GLEAN mRNA 800965 800994 0.529346 - . ID=CGI_10026189; scaffold1154 TRF Tandem_Repeat 800965 800994 60 + . . scaffold1154 GLEAN mRNA 817013 817065 1 - . ID=CGI_10026191; scaffold1154 TRF Tandem_Repeat 817013 817065 106 + . . scaffold1154 GLEAN mRNA 813780 814136 1 - . ID=CGI_10026191; scaffold1154 WUBlastX LINE_RTE-X 813780 814136 60 + . . scaffold1154 GLEAN mRNA 813852 814166 1 - . ID=CGI_10026191; scaffold1154 WUBlastX LINE_RTE-X 813852 814166 64 + . . scaffold1154 GLEAN mRNA 826499 826532 0.981461 - . ID=CGI_10026193; scaffold1154 TRF Tandem_Repeat 826499 826532 68 + . . scaffold1154 GLEAN mRNA 826532 826588 0.981461 - . ID=CGI_10026193; scaffold1154 TRF Tandem_Repeat 826532 826588 114 + . . scaffold1154 GLEAN mRNA 828247 828273 0.981461 - . ID=CGI_10026193; scaffold1154 TRF Tandem_Repeat 828247 828273 54 + . . scaffold1154 GLEAN mRNA 942100 942603 0.309787 - . ID=CGI_10026198; scaffold1154 TRF Tandem_Repeat 942100 942603 665 + . . scaffold1154 GLEAN mRNA 1033077 1033415 0.969571 + . ID=CGI_10026203; scaffold1154 WUBlastX LINE_RTE-X 1033077 1033415 80 + . . scaffold1154 GLEAN mRNA 1033017 1033421 0.969571 + . ID=CGI_10026203; scaffold1154 WUBlastX LINE_RTE-X 1033017 1033421 65 + . . scaffold1154 GLEAN mRNA 1058240 1058275 0.998248 + . ID=CGI_10026204; scaffold1154 TRF Tandem_Repeat 1058240 1058275 72 + . . scaffold1154 GLEAN mRNA 1058240 1058275 0.971858 - . ID=CGI_10026206; scaffold1154 TRF Tandem_Repeat 1058240 1058275 72 + . . scaffold1154 GLEAN mRNA 1080378 1080596 0.124336 - . ID=CGI_10026207; scaffold1154 WUBlastX DNA_IS4EU 1080198 1080596 142 - . . scaffold1154 GLEAN mRNA 1080593 1080670 0.124336 - . ID=CGI_10026207; scaffold1154 WUBlastX DNA_Kolobok-IS4 1080593 1080670 22 - . . scaffold1154 GLEAN mRNA 1080676 1080801 0.124336 - . ID=CGI_10026207; scaffold1154 WUBlastX DNA_IS4EU 1080676 1080801 45 - . . scaffold1154 GLEAN mRNA 1112444 1112481 0.124336 - . ID=CGI_10026207; scaffold1154 TRF Tandem_Repeat 1112444 1112481 58 + . . scaffold1154 GLEAN mRNA 1125774 1125870 0.124336 - . ID=CGI_10026207; scaffold1154 TRF Tandem_Repeat 1125774 1125870 117 + . . scaffold1154 GLEAN mRNA 1126045 1126078 0.124336 - . ID=CGI_10026207; scaffold1154 TRF Tandem_Repeat 1126045 1126078 50 + . . scaffold1154 GLEAN mRNA 1115898 1116158 0.124336 - . ID=CGI_10026207; scaffold1154 WUBlastX LINE_Penelope 1115898 1116158 43 + . . scaffold1154 GLEAN mRNA 1136307 1136346 0.124336 - . ID=CGI_10026207; scaffold1154 TRF Tandem_Repeat 1136307 1136346 53 + . . scaffold1154 GLEAN mRNA 1137633 1137662 0.124336 - . ID=CGI_10026207; scaffold1154 TRF Tandem_Repeat 1137633 1137662 60 + . . scaffold1154 GLEAN mRNA 1137689 1138032 0.124336 - . ID=CGI_10026207; scaffold1154 TRF Tandem_Repeat 1137689 1138032 373 + . . scaffold1154 GLEAN mRNA 1137682 1138052 0.124336 - . ID=CGI_10026207; scaffold1154 TRF Tandem_Repeat 1137682 1138052 388 + . . scaffold1154 GLEAN mRNA 1155101 1155307 0.449004 + . ID=CGI_10026209; scaffold1154 WUBlastX LTR_Gypsy 1154798 1155307 46 + . . scaffold867 GLEAN mRNA 3595 3978 0.999351 + . ID=CGI_10026210; scaffold867 WUBlastX LINE_L1-Tx1 3595 3978 84 + . . scaffold867 GLEAN mRNA 4110 4976 0.999351 + . ID=CGI_10026210; scaffold867 WUBlastX LINE_L1-Tx1 4110 4976 78 + . . scaffold867 GLEAN mRNA 3655 4005 0.999351 + . ID=CGI_10026210; scaffold867 WUBlastX LINE_L1-Tx1 3655 4005 114 + . . scaffold867 GLEAN mRNA 3511 3978 0.999351 + . ID=CGI_10026210; scaffold867 WUBlastX LINE_L1 3511 3978 29 + . . scaffold867 GLEAN mRNA 61725 61774 0.648712 - . ID=CGI_10026212; scaffold867 TRF Tandem_Repeat 61725 61774 57 + . . scaffold867 GLEAN mRNA 64267 64293 0.648712 - . ID=CGI_10026212; scaffold867 TRF Tandem_Repeat 64267 64293 54 + . . scaffold867 GLEAN mRNA 64295 64334 0.648712 - . ID=CGI_10026212; scaffold867 TRF Tandem_Repeat 64295 64334 80 + . . scaffold867 GLEAN mRNA 66098 66162 0.648712 - . ID=CGI_10026212; scaffold867 TRF Tandem_Repeat 66098 66162 85 + . . scaffold867 GLEAN mRNA 78945 79013 0.999377 - . ID=CGI_10026213; scaffold867 TRF Tandem_Repeat 78945 79013 120 + . . scaffold867 GLEAN mRNA 80516 80553 0.999377 - . ID=CGI_10026213; scaffold867 TRF Tandem_Repeat 80516 80553 76 + . . scaffold867 GLEAN mRNA 80735 80768 0.999377 - . ID=CGI_10026213; scaffold867 TRF Tandem_Repeat 80735 80768 68 + . . scaffold867 GLEAN mRNA 98499 99053 0.999073 - . ID=CGI_10026214; scaffold867 TRF Tandem_Repeat 98499 99053 770 + . . scaffold867 GLEAN mRNA 260940 261967 0.938203 - . ID=CGI_10026215; scaffold867 TRF Tandem_Repeat 260940 261967 977 + . . scaffold867 GLEAN mRNA 256030 256272 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX LINE_L1-Tx1 256030 256272 84 + . . scaffold867 GLEAN mRNA 256313 256399 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX LINE_L1-Tx1 256313 256399 30 + . . scaffold867 GLEAN mRNA 256027 256314 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX LINE_L1 256027 256314 66 + . . scaffold867 GLEAN mRNA 254362 254490 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX LINE_L1 254362 254490 64 + . . scaffold867 GLEAN mRNA 254820 255548 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX DNA_TcMar-Tc1 254820 255548 263 + . . scaffold867 GLEAN mRNA 255483 255596 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX DNA_TcMar-Tc1 255483 255596 48 + . . scaffold867 GLEAN mRNA 254377 254598 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX LINE_L1-Tx1 254377 254598 52 + . . scaffold867 GLEAN mRNA 254198 254383 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX LINE_L1-Tx1 254198 254383 100 + . . scaffold867 GLEAN mRNA 255586 255795 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX DNA_TcMar-Tc1 255586 255795 145 + . . scaffold867 GLEAN mRNA 254168 254353 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX LINE_L1-Tx1 254168 254353 55 + . . scaffold867 GLEAN mRNA 254126 254347 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX LINE_L1-Tx1 254126 254347 45 + . . scaffold867 GLEAN mRNA 256334 256414 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX LINE_L1-Tx1 256334 256414 21 + . . scaffold867 GLEAN mRNA 281741 281889 0.996494 + . ID=CGI_10026216; scaffold867 TRF Tandem_Repeat 281741 281889 120 + . . scaffold867 GLEAN mRNA 284779 285117 0.996494 + . ID=CGI_10026216; scaffold867 WUBlastX DNA_Harbinger 284779 285117 95 + . . scaffold867 GLEAN mRNA 284044 285066 0.996494 + . ID=CGI_10026216; scaffold867 WUBlastX DNA_Harbinger 284044 285066 247 + . . scaffold867 GLEAN mRNA 293633 293919 0.999676 + . ID=CGI_10026218; scaffold867 TRF Tandem_Repeat 293633 293919 249 + . . scaffold867 GLEAN mRNA 338841 338925 0.325534 + . ID=CGI_10026223; scaffold867 TRF Tandem_Repeat 338841 338925 161 + . . scaffold867 GLEAN mRNA 341221 341261 0.325534 + . ID=CGI_10026223; scaffold867 TRF Tandem_Repeat 341221 341261 82 + . . scaffold867 GLEAN mRNA 350396 350436 0.325534 + . ID=CGI_10026223; scaffold867 TRF Tandem_Repeat 350396 350436 82 + . . scaffold867 GLEAN mRNA 351337 351394 0.325534 + . ID=CGI_10026223; scaffold867 TRF Tandem_Repeat 351337 351394 98 + . . scaffold867 GLEAN mRNA 338841 338925 0.999674 - . ID=CGI_10026224; scaffold867 TRF Tandem_Repeat 338841 338925 161 + . . scaffold867 GLEAN mRNA 341221 341261 0.999674 - . ID=CGI_10026224; scaffold867 TRF Tandem_Repeat 341221 341261 82 + . . scaffold867 GLEAN mRNA 361125 361451 0.997753 - . ID=CGI_10026225; scaffold867 TRF Tandem_Repeat 361125 361451 460 + . . scaffold867 GLEAN mRNA 361549 361598 0.997753 - . ID=CGI_10026225; scaffold867 TRF Tandem_Repeat 361549 361598 100 + . . scaffold867 GLEAN mRNA 380739 380765 0.998821 - . ID=CGI_10026226; scaffold867 TRF Tandem_Repeat 380739 380765 54 + . . scaffold867 GLEAN mRNA 420204 420297 0.131277 - . ID=CGI_10026230; scaffold867 TRF Tandem_Repeat 420204 420297 179 + . . scaffold867 GLEAN mRNA 456095 456139 0.99533 + . ID=CGI_10026231; scaffold867 TRF Tandem_Repeat 456095 456139 56 + . . scaffold867 GLEAN mRNA 490722 490925 0.812964 - . ID=CGI_10026232; scaffold867 WUBlastX LINE_I 490722 490925 22 - . . scaffold867 GLEAN mRNA 494219 494247 0.812964 - . ID=CGI_10026232; scaffold867 TRF Tandem_Repeat 494219 494247 58 + . . scaffold867 GLEAN mRNA 496229 496804 0.812964 - . ID=CGI_10026232; scaffold867 WUBlastX LINE_L2 496229 496804 100 + . . scaffold867 GLEAN mRNA 496782 497594 0.812964 - . ID=CGI_10026232; scaffold867 WUBlastX LINE_RTE-X 496782 497594 184 + . . scaffold867 GLEAN mRNA 495313 495372 0.812964 - . ID=CGI_10026232; scaffold867 WUBlastX LINE_Jockey 495313 495372 20 + . . scaffold867 GLEAN mRNA 497367 497669 0.812964 - . ID=CGI_10026232; scaffold867 WUBlastX LINE_RTE-X 497367 497669 22 + . . scaffold867 GLEAN mRNA 496322 496840 0.812964 - . ID=CGI_10026232; scaffold867 WUBlastX LINE_RTE-X 496322 496840 269 + . . scaffold867 GLEAN mRNA 494887 494913 0.812964 - . ID=CGI_10026232; scaffold867 WUBlastX LINE_R2 494887 494913 22 + . . scaffold867 GLEAN mRNA 520568 520619 0.538043 - . ID=CGI_10026233; scaffold867 TRF Tandem_Repeat 520568 520619 104 + . . scaffold867 GLEAN mRNA 631786 631833 0.27804 + . ID=CGI_10026235; scaffold867 TRF Tandem_Repeat 631786 631833 55 + . . scaffold867 GLEAN mRNA 633549 633723 0.27804 + . ID=CGI_10026235; scaffold867 TRF Tandem_Repeat 633549 633723 251 + . . scaffold867 GLEAN mRNA 760924 761007 0.999675 + . ID=CGI_10026240; scaffold867 TRF Tandem_Repeat 760924 761007 96 + . . scaffold867 GLEAN mRNA 770531 770690 0.999675 + . ID=CGI_10026240; scaffold867 TRF Tandem_Repeat 770531 770690 113 + . . scaffold867 GLEAN mRNA 770533 770686 0.999675 + . ID=CGI_10026240; scaffold867 TRF Tandem_Repeat 770533 770686 209 + . . scaffold867 GLEAN mRNA 777394 777548 0.999675 + . ID=CGI_10026240; scaffold867 TRF Tandem_Repeat 777394 777548 224 + . . scaffold867 GLEAN mRNA 777674 777741 0.999675 + . ID=CGI_10026240; scaffold867 TRF Tandem_Repeat 777674 777741 136 + . . scaffold867 GLEAN mRNA 883280 883438 0.955659 - . ID=CGI_10026241; scaffold867 WUBlastX LTR_Gypsy 883280 883438 31 + . . scaffold867 GLEAN mRNA 883280 883438 1 + . ID=CGI_10026242; scaffold867 WUBlastX LTR_Gypsy 883280 883438 31 + . . scaffold867 GLEAN mRNA 884682 884837 1 + . ID=CGI_10026242; scaffold867 WUBlastX LTR_Gypsy 884682 884837 32 + . . scaffold867 GLEAN mRNA 887477 887663 0.494912 - . ID=CGI_10026243; scaffold867 TRF Tandem_Repeat 887477 887663 90 + . . scaffold867 GLEAN mRNA 891582 892293 0.494912 - . ID=CGI_10026243; scaffold867 TRF Tandem_Repeat 891582 892293 895 + . . scaffold867 GLEAN mRNA 904274 904309 0.494912 - . ID=CGI_10026243; scaffold867 TRF Tandem_Repeat 904274 904309 72 + . . scaffold867 GLEAN mRNA 905716 905880 0.494912 - . ID=CGI_10026243; scaffold867 WUBlastX LTR_ERVK 905716 905880 51 + . . scaffold867 GLEAN mRNA 906177 906260 0.494912 - . ID=CGI_10026243; scaffold867 WUBlastX LTR_ERVK 906177 906260 31 + . . scaffold867 GLEAN mRNA 904274 904309 0.734077 + . ID=CGI_10026244; scaffold867 TRF Tandem_Repeat 904274 904309 72 + . . scaffold867 GLEAN mRNA 905716 905880 0.734077 + . ID=CGI_10026244; scaffold867 WUBlastX LTR_ERVK 905716 905880 51 + . . scaffold867 GLEAN mRNA 906177 906260 0.734077 + . ID=CGI_10026244; scaffold867 WUBlastX LTR_ERVK 906177 906260 31 + . . scaffold867 GLEAN mRNA 913065 913101 0.984907 - . ID=CGI_10026245; scaffold867 TRF Tandem_Repeat 913065 913101 74 + . . scaffold867 GLEAN mRNA 958213 958619 0.937348 - . ID=CGI_10026247; scaffold867 TRF Tandem_Repeat 958213 958619 211 + . . scaffold867 GLEAN mRNA 958212 958600 0.937348 - . ID=CGI_10026247; scaffold867 TRF Tandem_Repeat 958212 958600 390 + . . scaffold867 GLEAN mRNA 958250 958600 0.937348 - . ID=CGI_10026247; scaffold867 TRF Tandem_Repeat 958250 958600 305 + . . scaffold867 GLEAN mRNA 958202 958619 0.937348 - . ID=CGI_10026247; scaffold867 TRF Tandem_Repeat 958202 958619 291 + . . scaffold867 GLEAN mRNA 959452 959724 0.937348 - . ID=CGI_10026247; scaffold867 TRF Tandem_Repeat 959452 959724 287 + . . scaffold867 GLEAN mRNA 959452 959678 0.937348 - . ID=CGI_10026247; scaffold867 TRF Tandem_Repeat 959452 959678 180 + . . scaffold867 GLEAN mRNA 970634 970842 0.361161 - . ID=CGI_10026249; scaffold867 TRF Tandem_Repeat 970634 970842 241 + . . scaffold867 GLEAN mRNA 972816 973023 0.361161 - . ID=CGI_10026249; scaffold867 TRF Tandem_Repeat 972816 973023 353 + . . scaffold867 GLEAN mRNA 979720 979878 0.852149 - . ID=CGI_10026251; scaffold867 TRF Tandem_Repeat 979720 979878 291 + . . scaffold867 GLEAN mRNA 979720 980044 0.852149 - . ID=CGI_10026251; scaffold867 TRF Tandem_Repeat 979720 980044 469 + . . scaffold867 GLEAN mRNA 979720 980044 0.852149 - . ID=CGI_10026251; scaffold867 TRF Tandem_Repeat 979720 980044 469 + . . scaffold867 GLEAN mRNA 979878 980044 0.852149 - . ID=CGI_10026251; scaffold867 TRF Tandem_Repeat 979878 980044 241 + . . scaffold867 GLEAN mRNA 991563 991596 0.996987 - . ID=CGI_10026252; scaffold867 TRF Tandem_Repeat 991563 991596 68 + . . scaffold867 GLEAN mRNA 997523 997567 0.999367 + . ID=CGI_10026253; scaffold867 TRF Tandem_Repeat 997523 997567 72 + . . scaffold867 GLEAN mRNA 997523 997570 0.999367 + . ID=CGI_10026253; scaffold867 TRF Tandem_Repeat 997523 997570 51 + . . scaffold867 GLEAN mRNA 998091 998270 0.999367 + . ID=CGI_10026253; scaffold867 TRF Tandem_Repeat 998091 998270 168 + . . scaffold867 GLEAN mRNA 1035302 1035349 1 - . ID=CGI_10026257; scaffold867 TRF Tandem_Repeat 1035302 1035349 78 + . . scaffold867 GLEAN mRNA 1036968 1036994 1 - . ID=CGI_10026257; scaffold867 TRF Tandem_Repeat 1036968 1036994 54 + . . scaffold867 GLEAN mRNA 1039474 1041526 0.999132 + . ID=CGI_10026258; scaffold867 TRF Tandem_Repeat 1039474 1041526 2245 + . . scaffold867 GLEAN mRNA 1053620 1054875 0.999132 + . ID=CGI_10026258; scaffold867 TRF Tandem_Repeat 1053620 1054875 1679 + . . scaffold867 GLEAN mRNA 1058485 1058586 0.30835 - . ID=CGI_10026260; scaffold867 WUBlastX LINE_L2 1058485 1058586 32 - . . scaffold867 GLEAN mRNA 1081354 1081404 1 + . ID=CGI_10026261; scaffold867 TRF Tandem_Repeat 1081354 1081404 102 + . . scaffold867 GLEAN mRNA 1135664 1135930 0.61743 - . ID=CGI_10026263; scaffold867 WUBlastX LINE_RTE-BovB 1135664 1135930 115 + . . scaffold867 GLEAN mRNA 1140144 1140175 1 - . ID=CGI_10026264; scaffold867 TRF Tandem_Repeat 1140144 1140175 64 + . . scaffold867 GLEAN mRNA 1154300 1156224 1 + . ID=CGI_10026265; scaffold867 TRF Tandem_Repeat 1154300 1156224 2357 + . . scaffold1836 GLEAN mRNA 103454 103508 0.9242 - . ID=CGI_10026267; scaffold1836 TRF Tandem_Repeat 103454 103508 110 + . . scaffold1836 GLEAN mRNA 103634 103700 0.9242 - . ID=CGI_10026267; scaffold1836 TRF Tandem_Repeat 103634 103700 98 + . . scaffold1836 GLEAN mRNA 126619 127179 0.992656 + . ID=CGI_10026268; scaffold1836 WUBlastX LINE_CR1 126619 127179 198 + . . scaffold1836 GLEAN mRNA 228084 228240 0.733782 + . ID=CGI_10026271; scaffold1836 TRF Tandem_Repeat 228084 228240 242 + . . scaffold1836 GLEAN mRNA 231249 231440 0.733782 + . ID=CGI_10026271; scaffold1836 TRF Tandem_Repeat 231249 231440 139 + . . scaffold1836 GLEAN mRNA 231249 231439 0.733782 + . ID=CGI_10026271; scaffold1836 TRF Tandem_Repeat 231249 231439 177 + . . scaffold1836 GLEAN mRNA 231249 231343 0.733782 + . ID=CGI_10026271; scaffold1836 TRF Tandem_Repeat 231249 231343 64 + . . scaffold1836 GLEAN mRNA 231740 231985 0.733782 + . ID=CGI_10026271; scaffold1836 TRF Tandem_Repeat 231740 231985 87 + . . scaffold1836 GLEAN mRNA 231776 232166 0.733782 + . ID=CGI_10026271; scaffold1836 TRF Tandem_Repeat 231776 232166 197 + . . scaffold1836 GLEAN mRNA 231776 231983 0.733782 + . ID=CGI_10026271; scaffold1836 TRF Tandem_Repeat 231776 231983 181 + . . scaffold1836 GLEAN mRNA 232044 232181 0.733782 + . ID=CGI_10026271; scaffold1836 TRF Tandem_Repeat 232044 232181 161 + . . scaffold1836 GLEAN mRNA 232044 232225 0.733782 + . ID=CGI_10026271; scaffold1836 TRF Tandem_Repeat 232044 232225 143 + . . scaffold1836 GLEAN mRNA 271016 271058 0.999424 - . ID=CGI_10026275; scaffold1836 TRF Tandem_Repeat 271016 271058 86 + . . scaffold1836 GLEAN mRNA 273065 273115 0.999424 - . ID=CGI_10026275; scaffold1836 TRF Tandem_Repeat 273065 273115 102 + . . scaffold1836 GLEAN mRNA 282082 282127 0.814164 - . ID=CGI_10026277; scaffold1836 TRF Tandem_Repeat 282082 282127 85 + . . scaffold1836 GLEAN mRNA 294783 295907 0.814164 - . ID=CGI_10026277; scaffold1836 TRF Tandem_Repeat 294783 295907 1709 + . . scaffold1836 GLEAN mRNA 282082 282127 1 + . ID=CGI_10026278; scaffold1836 TRF Tandem_Repeat 282082 282127 85 + . . scaffold1836 GLEAN mRNA 294783 295907 1 + . ID=CGI_10026279; scaffold1836 TRF Tandem_Repeat 294783 295907 1709 + . . scaffold1836 GLEAN mRNA 325958 326028 0.843723 + . ID=CGI_10026281; scaffold1836 TRF Tandem_Repeat 325958 326028 76 + . . scaffold1836 GLEAN mRNA 325960 326027 0.843723 + . ID=CGI_10026281; scaffold1836 TRF Tandem_Repeat 325960 326027 65 + . . scaffold1836 GLEAN mRNA 344484 344509 0.843723 + . ID=CGI_10026281; scaffold1836 TRF Tandem_Repeat 344484 344509 52 + . . scaffold1836 GLEAN mRNA 345104 345175 0.843723 + . ID=CGI_10026281; scaffold1836 TRF Tandem_Repeat 345104 345175 137 + . . scaffold1836 GLEAN mRNA 432068 432939 0.999095 - . ID=CGI_10026282; scaffold1836 TRF Tandem_Repeat 432068 432939 721 + . . scaffold1836 GLEAN mRNA 435453 436167 0.999095 - . ID=CGI_10026282; scaffold1836 TRF Tandem_Repeat 435453 436167 839 + . . scaffold1836 GLEAN mRNA 446155 446208 0.999675 + . ID=CGI_10026284; scaffold1836 TRF Tandem_Repeat 446155 446208 74 + . . scaffold1836 GLEAN mRNA 448197 448580 0.999675 + . ID=CGI_10026284; scaffold1836 TRF Tandem_Repeat 448197 448580 615 + . . scaffold1836 GLEAN mRNA 485226 485277 0.987048 - . ID=CGI_10026287; scaffold1836 TRF Tandem_Repeat 485226 485277 104 + . . scaffold1836 GLEAN mRNA 486411 486786 0.987048 - . ID=CGI_10026287; scaffold1836 TRF Tandem_Repeat 486411 486786 215 + . . scaffold1836 GLEAN mRNA 486411 486789 0.987048 - . ID=CGI_10026287; scaffold1836 TRF Tandem_Repeat 486411 486789 260 + . . scaffold1836 GLEAN mRNA 500753 501217 0.593384 - . ID=CGI_10026289; scaffold1836 WUBlastX LINE_Penelope 500753 501217 33 - . . scaffold1836 GLEAN mRNA 516828 517461 0.999985 - . ID=CGI_10026293; scaffold1836 TRF Tandem_Repeat 516828 517461 654 + . . scaffold1836 GLEAN mRNA 516826 517424 0.999985 - . ID=CGI_10026293; scaffold1836 TRF Tandem_Repeat 516826 517424 645 + . . scaffold1836 GLEAN mRNA 516828 517424 0.999985 - . ID=CGI_10026293; scaffold1836 TRF Tandem_Repeat 516828 517424 673 + . . scaffold1836 GLEAN mRNA 552646 553102 0.668028 - . ID=CGI_10026294; scaffold1836 TRF Tandem_Repeat 552646 553102 564 + . . scaffold1836 GLEAN mRNA 552646 553102 0.668028 - . ID=CGI_10026294; scaffold1836 TRF Tandem_Repeat 552646 553102 587 + . . scaffold1836 GLEAN mRNA 555919 556639 0.668028 - . ID=CGI_10026294; scaffold1836 TRF Tandem_Repeat 555919 556639 712 + . . scaffold1836 GLEAN mRNA 561440 561580 0.668028 - . ID=CGI_10026294; scaffold1836 TRF Tandem_Repeat 561440 561580 115 + . . scaffold1836 GLEAN mRNA 565871 567067 0.668028 - . ID=CGI_10026294; scaffold1836 TRF Tandem_Repeat 565871 567067 1966 + . . scaffold1836 GLEAN mRNA 670505 671380 0.984206 - . ID=CGI_10026298; scaffold1836 TRF Tandem_Repeat 670505 671380 1334 + . . scaffold1836 GLEAN mRNA 670520 671380 0.984206 - . ID=CGI_10026298; scaffold1836 TRF Tandem_Repeat 670520 671380 1334 + . . scaffold1836 GLEAN mRNA 670505 671380 0.984206 - . ID=CGI_10026298; scaffold1836 TRF Tandem_Repeat 670505 671380 1220 + . . scaffold1836 GLEAN mRNA 673685 673880 0.984206 - . ID=CGI_10026298; scaffold1836 TRF Tandem_Repeat 673685 673880 302 + . . scaffold1836 GLEAN mRNA 675125 675249 0.984206 - . ID=CGI_10026298; scaffold1836 TRF Tandem_Repeat 675125 675249 64 + . . scaffold1836 GLEAN mRNA 706639 707221 0.999676 - . ID=CGI_10026299; scaffold1836 TRF Tandem_Repeat 706639 707221 470 + . . scaffold1836 GLEAN mRNA 706637 707221 0.999676 - . ID=CGI_10026299; scaffold1836 TRF Tandem_Repeat 706637 707221 629 + . . scaffold1836 GLEAN mRNA 718370 718764 0.843575 + . ID=CGI_10026300; scaffold1836 TRF Tandem_Repeat 718370 718764 499 + . . scaffold1836 GLEAN mRNA 715534 715698 0.843575 + . ID=CGI_10026300; scaffold1836 WUBlastX LTR_Gypsy 715534 715698 79 + . . scaffold1836 GLEAN mRNA 715537 715650 0.843575 + . ID=CGI_10026300; scaffold1836 WUBlastX LTR_Gypsy 715537 715650 81 + . . scaffold1836 GLEAN mRNA 726571 726804 0.990978 + . ID=CGI_10026301; scaffold1836 TRF Tandem_Repeat 726571 726804 263 + . . scaffold1836 GLEAN mRNA 729238 729335 0.990978 + . ID=CGI_10026301; scaffold1836 TRF Tandem_Repeat 729238 729335 178 + . . scaffold1836 GLEAN mRNA 769713 770478 1 - . ID=CGI_10026306; scaffold1836 TRF Tandem_Repeat 769713 770478 1102 + . . scaffold1836 GLEAN mRNA 790745 790789 0.937542 - . ID=CGI_10026309; scaffold1836 TRF Tandem_Repeat 790745 790789 81 + . . scaffold1836 GLEAN mRNA 858827 859006 0.999943 + . ID=CGI_10026314; scaffold1836 TRF Tandem_Repeat 858827 859006 60 + . . scaffold1836 GLEAN mRNA 871942 871999 0.999943 + . ID=CGI_10026314; scaffold1836 TRF Tandem_Repeat 871942 871999 52 + . . scaffold1836 GLEAN mRNA 943076 943198 0.999994 - . ID=CGI_10026318; scaffold1836 TRF Tandem_Repeat 943076 943198 183 + . . scaffold1836 GLEAN mRNA 943658 943711 0.999994 - . ID=CGI_10026318; scaffold1836 TRF Tandem_Repeat 943658 943711 108 + . . scaffold1836 GLEAN mRNA 1025204 1025527 0.980298 - . ID=CGI_10026321; scaffold1836 WUBlastX LTR_Gypsy 1025171 1025527 232 - . . scaffold1836 GLEAN mRNA 1028107 1028274 0.980298 - . ID=CGI_10026321; scaffold1836 WUBlastX DNA_Harbinger 1028107 1028274 49 + . . scaffold1836 GLEAN mRNA 1026682 1026807 0.980298 - . ID=CGI_10026321; scaffold1836 WUBlastX LTR_Pao 1026682 1026807 29 - . . scaffold1836 GLEAN mRNA 1025530 1026786 0.980298 - . ID=CGI_10026321; scaffold1836 WUBlastX LTR_Gypsy 1025530 1026786 1012 - . . scaffold1836 GLEAN mRNA 1050845 1050886 0.980298 - . ID=CGI_10026321; scaffold1836 TRF Tandem_Repeat 1050845 1050886 75 + . . scaffold1836 GLEAN mRNA 1054251 1054308 0.980298 - . ID=CGI_10026321; scaffold1836 TRF Tandem_Repeat 1054251 1054308 116 + . . scaffold1836 GLEAN mRNA 1076774 1076818 1 - . ID=CGI_10026323; scaffold1836 TRF Tandem_Repeat 1076774 1076818 90 + . . scaffold1836 GLEAN mRNA 1081398 1081523 1 - . ID=CGI_10026323; scaffold1836 TRF Tandem_Repeat 1081398 1081523 206 + . . scaffold1836 GLEAN mRNA 1098428 1098457 0.999345 - . ID=CGI_10026325; scaffold1836 TRF Tandem_Repeat 1098428 1098457 60 + . . scaffold1836 GLEAN mRNA 1098511 1098562 0.999345 - . ID=CGI_10026325; scaffold1836 TRF Tandem_Repeat 1098511 1098562 68 + . . scaffold1836 GLEAN mRNA 1098523 1098561 0.999345 - . ID=CGI_10026325; scaffold1836 TRF Tandem_Repeat 1098523 1098561 51 + . . scaffold1836 GLEAN mRNA 1100048 1100085 0.999345 - . ID=CGI_10026325; scaffold1836 TRF Tandem_Repeat 1100048 1100085 51 + . . scaffold1836 GLEAN mRNA 1100259 1101273 0.999345 - . ID=CGI_10026325; scaffold1836 TRF Tandem_Repeat 1100259 1101273 1212 + . . scaffold678 GLEAN mRNA 17311 17370 0.999769 + . ID=CGI_10026329; scaffold678 TRF Tandem_Repeat 17311 17370 57 + . . scaffold678 GLEAN mRNA 23352 23389 0.999769 + . ID=CGI_10026329; scaffold678 TRF Tandem_Repeat 23352 23389 62 + . . scaffold678 GLEAN mRNA 27931 27993 0.999769 + . ID=CGI_10026329; scaffold678 TRF Tandem_Repeat 27931 27993 126 + . . scaffold678 GLEAN mRNA 34654 34686 0.999769 + . ID=CGI_10026329; scaffold678 TRF Tandem_Repeat 34654 34686 66 + . . scaffold678 GLEAN mRNA 43560 43595 0.999769 + . ID=CGI_10026329; scaffold678 TRF Tandem_Repeat 43560 43595 63 + . . scaffold678 GLEAN mRNA 89375 89536 0.702112 + . ID=CGI_10026333; scaffold678 WUBlastX LTR_Ngaro 89375 89536 28 - . . scaffold678 GLEAN mRNA 88977 89324 0.702112 + . ID=CGI_10026333; scaffold678 WUBlastX LTR_Ngaro 88977 89324 23 - . . scaffold678 GLEAN mRNA 89803 89943 0.702112 + . ID=CGI_10026333; scaffold678 WUBlastX LTR_Ngaro 89803 89943 41 - . . scaffold678 GLEAN mRNA 89942 90610 0.702112 + . ID=CGI_10026333; scaffold678 WUBlastX LTR_Ngaro 89942 90610 41 - . . scaffold678 GLEAN mRNA 89625 89816 0.702112 + . ID=CGI_10026333; scaffold678 WUBlastX LTR_Ngaro 89625 89816 33 - . . scaffold678 GLEAN mRNA 89655 89864 0.702112 + . ID=CGI_10026333; scaffold678 WUBlastX LTR_Ngaro 89655 89864 47 - . . scaffold678 GLEAN mRNA 135761 136234 0.499963 + . ID=CGI_10026336; scaffold678 WUBlastX LTR_Copia 135761 136234 233 + . . scaffold678 GLEAN mRNA 177647 177982 0.949336 + . ID=CGI_10026338; scaffold678 TRF Tandem_Repeat 177647 177982 378 + . . scaffold678 GLEAN mRNA 205860 205903 0.999676 + . ID=CGI_10026340; scaffold678 TRF Tandem_Repeat 205860 205903 70 + . . scaffold678 GLEAN mRNA 205934 207060 0.999676 + . ID=CGI_10026340; scaffold678 TRF Tandem_Repeat 205934 207060 1602 + . . scaffold678 GLEAN mRNA 218075 218106 0.926398 - . ID=CGI_10026343; scaffold678 TRF Tandem_Repeat 218075 218106 64 + . . scaffold678 GLEAN mRNA 219690 219743 0.926398 - . ID=CGI_10026343; scaffold678 TRF Tandem_Repeat 219690 219743 108 + . . scaffold678 GLEAN mRNA 221073 221125 0.926398 - . ID=CGI_10026343; scaffold678 TRF Tandem_Repeat 221073 221125 106 + . . scaffold678 GLEAN mRNA 225118 225375 0.926398 - . ID=CGI_10026343; scaffold678 WUBlastX LINE_RTE-X 225118 225375 55 - . . scaffold678 GLEAN mRNA 225118 225426 0.926398 - . ID=CGI_10026343; scaffold678 WUBlastX LINE_RTE-X 225118 225426 51 - . . scaffold678 GLEAN mRNA 229761 229806 0.926398 - . ID=CGI_10026343; scaffold678 TRF Tandem_Repeat 229761 229806 92 + . . scaffold678 GLEAN mRNA 229806 229832 0.926398 - . ID=CGI_10026343; scaffold678 TRF Tandem_Repeat 229806 229832 54 + . . scaffold678 GLEAN mRNA 260781 260816 1 + . ID=CGI_10026345; scaffold678 TRF Tandem_Repeat 260539 260816 466 + . . scaffold678 GLEAN mRNA 290539 290586 1 - . ID=CGI_10026346; scaffold678 TRF Tandem_Repeat 290539 290586 87 + . . scaffold678 GLEAN mRNA 346892 346985 0.449402 - . ID=CGI_10026353; scaffold678 TRF Tandem_Repeat 346892 346985 74 + . . scaffold678 GLEAN mRNA 347125 347215 0.449402 - . ID=CGI_10026353; scaffold678 TRF Tandem_Repeat 347125 347215 77 + . . scaffold678 GLEAN mRNA 397456 397922 1 + . ID=CGI_10026356; scaffold678 TRF Tandem_Repeat 397456 397922 702 + . . scaffold678 GLEAN mRNA 397921 398929 1 + . ID=CGI_10026356; scaffold678 TRF Tandem_Repeat 397921 398929 1462 + . . scaffold678 GLEAN mRNA 402404 403307 1 + . ID=CGI_10026356; scaffold678 TRF Tandem_Repeat 402404 403307 962 + . . scaffold678 GLEAN mRNA 402439 403265 1 + . ID=CGI_10026356; scaffold678 TRF Tandem_Repeat 402439 403265 815 + . . scaffold678 GLEAN mRNA 403213 403476 1 + . ID=CGI_10026356; scaffold678 TRF Tandem_Repeat 403213 403476 271 + . . scaffold678 GLEAN mRNA 394092 394105 1 + . ID=CGI_10026356; scaffold678 WUBlastX LTR_Gypsy 393872 394105 33 + . . scaffold678 GLEAN mRNA 411084 411215 0.999337 - . ID=CGI_10026357; scaffold678 TRF Tandem_Repeat 411084 411215 221 + . . scaffold678 GLEAN mRNA 411712 412136 0.999337 - . ID=CGI_10026357; scaffold678 TRF Tandem_Repeat 411712 412136 338 + . . scaffold678 GLEAN mRNA 411712 412136 0.998703 + . ID=CGI_10026358; scaffold678 TRF Tandem_Repeat 411712 412136 338 + . . scaffold678 GLEAN mRNA 423640 423711 0.998703 + . ID=CGI_10026358; scaffold678 TRF Tandem_Repeat 423640 423711 144 + . . scaffold678 GLEAN mRNA 427443 427506 0.998703 + . ID=CGI_10026358; scaffold678 TRF Tandem_Repeat 427443 427506 119 + . . scaffold678 GLEAN mRNA 427443 427506 0.999987 - . ID=CGI_10026359; scaffold678 TRF Tandem_Repeat 427443 427506 119 + . . scaffold678 GLEAN mRNA 454637 454823 0.586336 - . ID=CGI_10026361; scaffold678 TRF Tandem_Repeat 454637 454823 266 + . . scaffold678 GLEAN mRNA 456991 457054 0.586336 - . ID=CGI_10026361; scaffold678 TRF Tandem_Repeat 456991 457054 128 + . . scaffold678 GLEAN mRNA 463100 463208 0.993513 + . ID=CGI_10026362; scaffold678 TRF Tandem_Repeat 463100 463208 157 + . . scaffold678 GLEAN mRNA 463381 463652 0.993513 + . ID=CGI_10026362; scaffold678 TRF Tandem_Repeat 463381 463652 372 + . . scaffold678 GLEAN mRNA 467030 467187 0.993513 + . ID=CGI_10026362; scaffold678 TRF Tandem_Repeat 467030 467187 262 + . . scaffold678 GLEAN mRNA 467440 467492 0.993513 + . ID=CGI_10026362; scaffold678 TRF Tandem_Repeat 467440 467492 106 + . . scaffold678 GLEAN mRNA 467797 468391 0.993513 + . ID=CGI_10026362; scaffold678 TRF Tandem_Repeat 467797 468391 1021 + . . scaffold678 GLEAN mRNA 468857 468943 0.993513 + . ID=CGI_10026362; scaffold678 TRF Tandem_Repeat 468857 468943 122 + . . scaffold678 GLEAN mRNA 469033 469207 0.993513 + . ID=CGI_10026362; scaffold678 TRF Tandem_Repeat 469033 469207 158 + . . scaffold678 GLEAN mRNA 469019 469207 0.993513 + . ID=CGI_10026362; scaffold678 TRF Tandem_Repeat 469019 469207 87 + . . scaffold678 GLEAN mRNA 469206 469371 0.993513 + . ID=CGI_10026362; scaffold678 TRF Tandem_Repeat 469206 469371 170 + . . scaffold678 GLEAN mRNA 469449 469534 0.993513 + . ID=CGI_10026362; scaffold678 TRF Tandem_Repeat 469449 469534 82 + . . scaffold678 GLEAN mRNA 470091 470119 0.993513 + . ID=CGI_10026362; scaffold678 TRF Tandem_Repeat 470091 470119 58 + . . scaffold678 GLEAN mRNA 527609 527656 1 - . ID=CGI_10026365; scaffold678 TRF Tandem_Repeat 527609 527656 96 + . . scaffold678 GLEAN mRNA 535373 536146 0.996676 + . ID=CGI_10026366; scaffold678 TRF Tandem_Repeat 535373 536146 641 + . . scaffold678 GLEAN mRNA 539544 539663 0.996676 + . ID=CGI_10026366; scaffold678 TRF Tandem_Repeat 539544 539663 120 + . . scaffold678 GLEAN mRNA 549887 550311 0.996676 + . ID=CGI_10026366; scaffold678 TRF Tandem_Repeat 549887 550311 561 + . . scaffold678 GLEAN mRNA 540623 541032 0.996676 + . ID=CGI_10026366; scaffold678 TRF Tandem_Repeat 540623 541032 454 + . . scaffold678 GLEAN mRNA 637625 637822 0.986036 - . ID=CGI_10026369; scaffold678 WUBlastX LINE_L2 637625 637822 31 - . . scaffold678 GLEAN mRNA 642629 642663 0.986036 - . ID=CGI_10026369; scaffold678 TRF Tandem_Repeat 642629 642663 61 + . . scaffold678 GLEAN mRNA 646799 646844 0.986036 - . ID=CGI_10026369; scaffold678 TRF Tandem_Repeat 646799 646844 92 + . . scaffold678 GLEAN mRNA 649315 649349 0.986036 - . ID=CGI_10026369; scaffold678 TRF Tandem_Repeat 649315 649349 70 + . . scaffold678 GLEAN mRNA 647458 647925 0.986036 - . ID=CGI_10026369; scaffold678 WUBlastX LINE_L2 647458 647925 129 + . . scaffold678 GLEAN mRNA 647572 647910 0.986036 - . ID=CGI_10026369; scaffold678 WUBlastX LINE_L2 647572 647910 168 + . . scaffold678 GLEAN mRNA 647254 647907 0.986036 - . ID=CGI_10026369; scaffold678 WUBlastX LINE_L2 647254 647907 46 + . . scaffold678 GLEAN mRNA 647894 649093 0.986036 - . ID=CGI_10026369; scaffold678 WUBlastX LINE_L2 647894 649093 814 + . . scaffold678 GLEAN mRNA 656685 656718 0.986036 - . ID=CGI_10026369; scaffold678 TRF Tandem_Repeat 656685 656718 68 + . . scaffold678 GLEAN mRNA 703390 703446 0.773227 + . ID=CGI_10026373; scaffold678 TRF Tandem_Repeat 703390 703446 114 + . . scaffold678 GLEAN mRNA 703940 703998 0.773227 + . ID=CGI_10026373; scaffold678 TRF Tandem_Repeat 703940 703998 118 + . . scaffold678 GLEAN mRNA 714104 714164 0.651135 - . ID=CGI_10026374; scaffold678 TRF Tandem_Repeat 714104 714164 70 + . . scaffold678 GLEAN mRNA 714103 714164 0.651135 - . ID=CGI_10026374; scaffold678 TRF Tandem_Repeat 714103 714164 63 + . . scaffold678 GLEAN mRNA 714334 715343 0.651135 - . ID=CGI_10026374; scaffold678 TRF Tandem_Repeat 714334 715343 1388 + . . scaffold678 GLEAN mRNA 726081 726113 0.937362 - . ID=CGI_10026375; scaffold678 TRF Tandem_Repeat 726081 726113 66 + . . scaffold678 GLEAN mRNA 727569 727640 0.937362 - . ID=CGI_10026375; scaffold678 TRF Tandem_Repeat 727569 727640 72 + . . scaffold678 GLEAN mRNA 720730 721038 0.937362 - . ID=CGI_10026375; scaffold678 WUBlastX LINE_L1-Tx1 720730 721038 20 - . . scaffold678 GLEAN mRNA 747618 747651 0.995705 - . ID=CGI_10026377; scaffold678 TRF Tandem_Repeat 747618 747651 59 + . . scaffold678 GLEAN mRNA 747651 747677 0.995705 - . ID=CGI_10026377; scaffold678 TRF Tandem_Repeat 747651 747677 54 + . . scaffold678 GLEAN mRNA 747022 747135 0.995705 - . ID=CGI_10026377; scaffold678 WUBlastX DNA_Harbinger 747022 747135 53 - . . scaffold678 GLEAN mRNA 746555 746917 0.995705 - . ID=CGI_10026377; scaffold678 WUBlastX DNA_Harbinger 746555 746917 274 - . . scaffold678 GLEAN mRNA 747761 747919 0.995705 - . ID=CGI_10026377; scaffold678 WUBlastX DNA_Harbinger 747761 747919 111 - . . scaffold678 GLEAN mRNA 748742 749143 0.995705 - . ID=CGI_10026377; scaffold678 WUBlastX DNA_Harbinger 748742 749143 77 - . . scaffold678 GLEAN mRNA 747618 747651 0.987721 + . ID=CGI_10026378; scaffold678 TRF Tandem_Repeat 747618 747651 59 + . . scaffold678 GLEAN mRNA 747651 747677 0.987721 + . ID=CGI_10026378; scaffold678 TRF Tandem_Repeat 747651 747677 54 + . . scaffold678 GLEAN mRNA 747022 747135 0.987721 + . ID=CGI_10026378; scaffold678 WUBlastX DNA_Harbinger 747022 747135 53 - . . scaffold678 GLEAN mRNA 746555 746917 0.987721 + . ID=CGI_10026378; scaffold678 WUBlastX DNA_Harbinger 746555 746917 274 - . . scaffold678 GLEAN mRNA 747761 747919 0.987721 + . ID=CGI_10026378; scaffold678 WUBlastX DNA_Harbinger 747761 747919 111 - . . scaffold678 GLEAN mRNA 748742 749143 0.987721 + . ID=CGI_10026378; scaffold678 WUBlastX DNA_Harbinger 748742 749143 77 - . . scaffold678 GLEAN mRNA 770181 770208 0.749747 - . ID=CGI_10026380; scaffold678 TRF Tandem_Repeat 770181 770208 56 + . . scaffold678 GLEAN mRNA 805751 805782 0.957761 + . ID=CGI_10026382; scaffold678 TRF Tandem_Repeat 805751 805782 64 + . . scaffold678 GLEAN mRNA 805782 805823 0.957761 + . ID=CGI_10026382; scaffold678 TRF Tandem_Repeat 805782 805823 84 + . . scaffold678 GLEAN mRNA 815428 815622 0.957761 + . ID=CGI_10026382; scaffold678 WUBlastX LTR_Gypsy 815428 815622 25 + . . scaffold678 GLEAN mRNA 815672 815842 0.957761 + . ID=CGI_10026382; scaffold678 WUBlastX LTR_Gypsy 815672 815842 114 + . . scaffold678 GLEAN mRNA 815654 815860 0.957761 + . ID=CGI_10026382; scaffold678 WUBlastX LTR_Gypsy 815654 815860 67 + . . scaffold678 GLEAN mRNA 825923 826034 0.957761 + . ID=CGI_10026382; scaffold678 TRF Tandem_Repeat 825923 826034 93 + . . scaffold678 GLEAN mRNA 826985 827338 0.957761 + . ID=CGI_10026382; scaffold678 TRF Tandem_Repeat 826985 827338 234 + . . scaffold678 GLEAN mRNA 852568 853025 0.999351 + . ID=CGI_10026383; scaffold678 TRF Tandem_Repeat 852568 853025 475 + . . scaffold678 GLEAN mRNA 852572 853034 0.999351 + . ID=CGI_10026383; scaffold678 TRF Tandem_Repeat 852572 853034 366 + . . scaffold678 GLEAN mRNA 852568 853034 0.999351 + . ID=CGI_10026383; scaffold678 TRF Tandem_Repeat 852568 853034 424 + . . scaffold678 GLEAN mRNA 852568 853025 0.999351 + . ID=CGI_10026383; scaffold678 TRF Tandem_Repeat 852568 853025 506 + . . scaffold678 GLEAN mRNA 874423 874811 0.999998 - . ID=CGI_10026385; scaffold678 TRF Tandem_Repeat 874423 874811 646 + . . scaffold678 GLEAN mRNA 877334 877811 0.999998 - . ID=CGI_10026385; scaffold678 TRF Tandem_Repeat 877334 877811 875 + . . scaffold678 GLEAN mRNA 883720 884232 1 + . ID=CGI_10026386; scaffold678 TRF Tandem_Repeat 883720 884232 812 + . . scaffold678 GLEAN mRNA 883724 884232 1 + . ID=CGI_10026386; scaffold678 TRF Tandem_Repeat 883724 884232 803 + . . scaffold678 GLEAN mRNA 885068 885386 1 + . ID=CGI_10026386; scaffold678 TRF Tandem_Repeat 885068 885386 460 + . . scaffold678 GLEAN mRNA 885984 887173 1 + . ID=CGI_10026386; scaffold678 TRF Tandem_Repeat 885984 887173 1624 + . . scaffold678 GLEAN mRNA 931546 932066 1 - . ID=CGI_10026389; scaffold678 TRF Tandem_Repeat 931546 932066 652 + . . scaffold678 GLEAN mRNA 933892 934061 1 - . ID=CGI_10026389; scaffold678 TRF Tandem_Repeat 933892 934061 236 + . . scaffold678 GLEAN mRNA 990605 990961 0.955912 - . ID=CGI_10026391; scaffold678 WUBlastX DNA_Harbinger 990605 990961 45 - . . scaffold678 GLEAN mRNA 1030470 1031600 0.783365 - . ID=CGI_10026392; scaffold678 TRF Tandem_Repeat 1030470 1031600 1429 + . . scaffold678 GLEAN mRNA 1032109 1032448 0.783365 - . ID=CGI_10026392; scaffold678 TRF Tandem_Repeat 1032109 1032448 477 + . . scaffold678 GLEAN mRNA 1030470 1031600 0.994916 + . ID=CGI_10026393; scaffold678 TRF Tandem_Repeat 1030470 1031600 1429 + . . scaffold678 GLEAN mRNA 1032109 1032448 0.994916 + . ID=CGI_10026393; scaffold678 TRF Tandem_Repeat 1032109 1032448 477 + . . scaffold678 GLEAN mRNA 1067664 1067879 0.799747 + . ID=CGI_10026395; scaffold678 TRF Tandem_Repeat 1067664 1067879 360 + . . scaffold678 GLEAN mRNA 1092083 1092108 0.995194 - . ID=CGI_10026396; scaffold678 TRF Tandem_Repeat 1092083 1092108 52 + . . scaffold678 GLEAN mRNA 1149584 1150518 0.374195 - . ID=CGI_10026400; scaffold678 TRF Tandem_Repeat 1149584 1150518 1228 + . . scaffold678 GLEAN mRNA 1146494 1147531 0.374195 - . ID=CGI_10026400; scaffold678 TRF Tandem_Repeat 1146494 1147531 1545 + . . scaffold678 GLEAN mRNA 1146490 1147531 0.374195 - . ID=CGI_10026400; scaffold678 TRF Tandem_Repeat 1146490 1147531 1616 + . . scaffold100 GLEAN mRNA 5003 5036 0.999976 + . ID=CGI_10026403; scaffold100 TRF Tandem_Repeat 5003 5036 59 + . . scaffold100 GLEAN mRNA 11925 12931 0.999976 + . ID=CGI_10026403; scaffold100 TRF Tandem_Repeat 11925 12931 1086 + . . scaffold100 GLEAN mRNA 11921 12916 0.999976 + . ID=CGI_10026403; scaffold100 TRF Tandem_Repeat 11921 12916 1046 + . . scaffold100 GLEAN mRNA 11921 12931 0.999976 + . ID=CGI_10026403; scaffold100 TRF Tandem_Repeat 11921 12931 1061 + . . scaffold100 GLEAN mRNA 83033 83302 0.999676 - . ID=CGI_10026412; scaffold100 TRF Tandem_Repeat 83033 83302 445 + . . scaffold100 GLEAN mRNA 90396 90430 1 + . ID=CGI_10026413; scaffold100 TRF Tandem_Repeat 90396 90430 70 + . . scaffold100 GLEAN mRNA 92372 92396 1 + . ID=CGI_10026413; scaffold100 TRF Tandem_Repeat 92372 92396 50 + . . scaffold100 GLEAN mRNA 96516 96638 1 + . ID=CGI_10026413; scaffold100 TRF Tandem_Repeat 96516 96638 210 + . . scaffold100 GLEAN mRNA 98679 98720 1 + . ID=CGI_10026413; scaffold100 TRF Tandem_Repeat 98679 98720 57 + . . scaffold100 GLEAN mRNA 123548 124085 0.993907 - . ID=CGI_10026414; scaffold100 TRF Tandem_Repeat 123548 124085 541 + . . scaffold100 GLEAN mRNA 123561 124085 0.993907 - . ID=CGI_10026414; scaffold100 TRF Tandem_Repeat 123561 124085 443 + . . scaffold100 GLEAN mRNA 123590 124106 0.993907 - . ID=CGI_10026414; scaffold100 TRF Tandem_Repeat 123590 124106 491 + . . scaffold100 GLEAN mRNA 124624 126170 0.993907 - . ID=CGI_10026414; scaffold100 TRF Tandem_Repeat 124624 126170 1218 + . . scaffold100 GLEAN mRNA 127499 127566 0.993907 - . ID=CGI_10026414; scaffold100 TRF Tandem_Repeat 127499 127566 136 + . . scaffold100 GLEAN mRNA 127773 127823 0.993907 - . ID=CGI_10026414; scaffold100 TRF Tandem_Repeat 127773 127823 93 + . . scaffold100 GLEAN mRNA 135155 135213 0.785776 + . ID=CGI_10026415; scaffold100 TRF Tandem_Repeat 135155 135213 109 + . . scaffold100 GLEAN mRNA 145803 145885 1 - . ID=CGI_10026416; scaffold100 TRF Tandem_Repeat 145803 145885 159 + . . scaffold100 GLEAN mRNA 150132 150203 0.999158 - . ID=CGI_10026417; scaffold100 TRF Tandem_Repeat 150132 150203 126 + . . scaffold100 GLEAN mRNA 203661 203707 0.678254 - . ID=CGI_10026419; scaffold100 TRF Tandem_Repeat 203661 203707 94 + . . scaffold100 GLEAN mRNA 266486 266532 1 + . ID=CGI_10026424; scaffold100 TRF Tandem_Repeat 266486 266532 94 + . . scaffold100 GLEAN mRNA 280739 280774 1 + . ID=CGI_10026424; scaffold100 TRF Tandem_Repeat 280739 280774 72 + . . scaffold100 GLEAN mRNA 297229 297336 0.999996 - . ID=CGI_10026426; scaffold100 TRF Tandem_Repeat 297229 297336 121 + . . scaffold100 GLEAN mRNA 335241 335985 1 - . ID=CGI_10026427; scaffold100 TRF Tandem_Repeat 335241 335985 1122 + . . scaffold100 GLEAN mRNA 336158 336254 1 - . ID=CGI_10026427; scaffold100 TRF Tandem_Repeat 336158 336254 92 + . . scaffold100 GLEAN mRNA 337310 337426 1 - . ID=CGI_10026427; scaffold100 TRF Tandem_Repeat 337310 337426 101 + . . scaffold100 GLEAN mRNA 337463 337635 1 - . ID=CGI_10026427; scaffold100 TRF Tandem_Repeat 337463 337635 168 + . . scaffold100 GLEAN mRNA 337463 337638 1 - . ID=CGI_10026427; scaffold100 TRF Tandem_Repeat 337463 337638 111 + . . scaffold100 GLEAN mRNA 337481 337658 1 - . ID=CGI_10026427; scaffold100 TRF Tandem_Repeat 337481 337658 149 + . . scaffold100 GLEAN mRNA 337724 337825 1 - . ID=CGI_10026427; scaffold100 TRF Tandem_Repeat 337724 337825 109 + . . scaffold100 GLEAN mRNA 352737 352778 0.998953 + . ID=CGI_10026429; scaffold100 TRF Tandem_Repeat 352737 352778 84 + . . scaffold100 GLEAN mRNA 353086 353396 0.998953 + . ID=CGI_10026429; scaffold100 TRF Tandem_Repeat 353086 353396 201 + . . scaffold100 GLEAN mRNA 358617 358813 0.998953 + . ID=CGI_10026429; scaffold100 TRF Tandem_Repeat 358617 358813 385 + . . scaffold100 GLEAN mRNA 440457 440482 0.72825 - . ID=CGI_10026438; scaffold100 TRF Tandem_Repeat 440457 440482 52 + . . scaffold100 GLEAN mRNA 440679 441005 0.72825 - . ID=CGI_10026438; scaffold100 WUBlastX DNA_TcMar-Tc1 440679 441005 38 - . . scaffold100 GLEAN mRNA 440742 440936 0.72825 - . ID=CGI_10026438; scaffold100 WUBlastX DNA_TcMar-Tc1 440742 440936 71 - . . scaffold100 GLEAN mRNA 440748 440978 0.72825 - . ID=CGI_10026438; scaffold100 WUBlastX DNA_TcMar-Tc1 440748 440978 58 - . . scaffold100 GLEAN mRNA 461288 461360 0.762155 + . ID=CGI_10026441; scaffold100 TRF Tandem_Repeat 461288 461360 139 + . . scaffold100 GLEAN mRNA 461681 461724 0.762155 + . ID=CGI_10026441; scaffold100 TRF Tandem_Repeat 461681 461724 88 + . . scaffold100 GLEAN mRNA 462058 462104 0.762155 + . ID=CGI_10026441; scaffold100 TRF Tandem_Repeat 462058 462104 94 + . . scaffold100 GLEAN mRNA 573677 573764 0.372163 - . ID=CGI_10026443; scaffold100 TRF Tandem_Repeat 573677 573764 86 + . . scaffold100 GLEAN mRNA 573677 573764 0.372163 - . ID=CGI_10026443; scaffold100 TRF Tandem_Repeat 573677 573764 95 + . . scaffold100 GLEAN mRNA 584137 584164 0.372163 - . ID=CGI_10026443; scaffold100 TRF Tandem_Repeat 584137 584164 56 + . . scaffold100 GLEAN mRNA 611024 611271 0.74459 - . ID=CGI_10026444; scaffold100 TRF Tandem_Repeat 611024 611271 162 + . . scaffold100 GLEAN mRNA 611077 611284 0.74459 - . ID=CGI_10026444; scaffold100 TRF Tandem_Repeat 611077 611284 228 + . . scaffold100 GLEAN mRNA 617475 617555 0.998789 - . ID=CGI_10026445; scaffold100 TRF Tandem_Repeat 617475 617555 117 + . . scaffold100 GLEAN mRNA 637993 638531 0.873323 + . ID=CGI_10026446; scaffold100 TRF Tandem_Repeat 637993 638531 930 + . . scaffold100 GLEAN mRNA 647051 647242 0.873323 + . ID=CGI_10026446; scaffold100 TRF Tandem_Repeat 647051 647242 187 + . . scaffold100 GLEAN mRNA 648603 649308 0.873323 + . ID=CGI_10026446; scaffold100 TRF Tandem_Repeat 648603 649308 876 + . . scaffold100 GLEAN mRNA 648815 648926 0.873323 + . ID=CGI_10026446; scaffold100 TRF Tandem_Repeat 648815 648926 62 + . . scaffold100 GLEAN mRNA 648603 649308 0.873323 + . ID=CGI_10026446; scaffold100 TRF Tandem_Repeat 648603 649308 995 + . . scaffold100 GLEAN mRNA 648823 648939 0.873323 + . ID=CGI_10026446; scaffold100 TRF Tandem_Repeat 648823 648939 66 + . . scaffold100 GLEAN mRNA 677882 678762 0.993892 - . ID=CGI_10026448; scaffold100 TRF Tandem_Repeat 677882 678762 1611 + . . scaffold100 GLEAN mRNA 679994 680059 0.993892 - . ID=CGI_10026448; scaffold100 TRF Tandem_Repeat 679994 680059 78 + . . scaffold100 GLEAN mRNA 718167 718697 0.993892 - . ID=CGI_10026448; scaffold100 TRF Tandem_Repeat 718167 718697 712 + . . scaffold100 GLEAN mRNA 727203 728027 0.999661 + . ID=CGI_10026450; scaffold100 WUBlastX DNA_Crypton 727203 728027 55 + . . scaffold100 GLEAN mRNA 1105267 1105315 0.710974 - . ID=CGI_10026464; scaffold100 TRF Tandem_Repeat 1105267 1105315 91 + . . scaffold100 GLEAN mRNA 1117860 1117923 0.999481 - . ID=CGI_10026465; scaffold100 TRF Tandem_Repeat 1117860 1117923 128 + . . scaffold100 GLEAN mRNA 1118462 1118515 0.999481 - . ID=CGI_10026465; scaffold100 TRF Tandem_Repeat 1118462 1118515 108 + . . scaffold100 GLEAN mRNA 1121456 1121489 0.999481 - . ID=CGI_10026465; scaffold100 TRF Tandem_Repeat 1121456 1121489 52 + . . scaffold156 GLEAN mRNA 4055 4242 0.999676 + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 4055 4242 127 + . . scaffold156 GLEAN mRNA 4055 4592 0.999676 + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 4055 4592 365 + . . scaffold156 GLEAN mRNA 4162 4263 0.999676 + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 4162 4263 50 + . . scaffold156 GLEAN mRNA 4244 4592 0.999676 + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 4244 4592 440 + . . scaffold156 GLEAN mRNA 3959 4301 0.999676 + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 3959 4301 217 + . . scaffold156 GLEAN mRNA 4365 4458 0.999676 + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 4365 4458 50 + . . scaffold156 GLEAN mRNA 5732 6190 0.999676 + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 5732 6190 427 + . . scaffold156 GLEAN mRNA 5791 6181 0.999676 + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 5791 6181 435 + . . scaffold156 GLEAN mRNA 5791 6190 0.999676 + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 5791 6190 431 + . . scaffold156 GLEAN mRNA 7497 7652 0.999676 + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 7497 7652 163 + . . scaffold156 GLEAN mRNA 21737 21781 0.782343 + . ID=CGI_10026471; scaffold156 TRF Tandem_Repeat 21737 21781 72 + . . scaffold156 GLEAN mRNA 25513 25593 0.782343 + . ID=CGI_10026471; scaffold156 WUBlastX LTR_Gypsy 25513 25593 21 + . . scaffold156 GLEAN mRNA 25552 25638 0.782343 + . ID=CGI_10026471; scaffold156 WUBlastX LTR_Gypsy 25552 25638 20 + . . scaffold156 GLEAN mRNA 25322 25495 0.782343 + . ID=CGI_10026471; scaffold156 WUBlastX LTR_Gypsy 25322 25495 44 + . . scaffold156 GLEAN mRNA 16359 16387 0.782343 + . ID=CGI_10026471; scaffold156 TRF Tandem_Repeat 16359 16387 58 + . . scaffold156 GLEAN mRNA 52775 53590 0.511907 + . ID=CGI_10026475; scaffold156 TRF Tandem_Repeat 52775 53590 1310 + . . scaffold156 GLEAN mRNA 58597 58854 0.511907 + . ID=CGI_10026475; scaffold156 TRF Tandem_Repeat 58597 58854 358 + . . scaffold156 GLEAN mRNA 59810 60643 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 59810 60643 511 - . . scaffold156 GLEAN mRNA 56116 56754 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 56116 56754 595 - . . scaffold156 GLEAN mRNA 56763 57113 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 56763 57113 367 - . . scaffold156 GLEAN mRNA 60579 61241 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 60579 61241 303 - . . scaffold156 GLEAN mRNA 59305 59772 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 59305 59772 285 - . . scaffold156 GLEAN mRNA 57913 58596 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 57913 58596 516 - . . scaffold156 GLEAN mRNA 59293 59682 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 59293 59682 299 - . . scaffold156 GLEAN mRNA 59675 59803 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 59675 59803 57 - . . scaffold156 GLEAN mRNA 57119 57946 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 57119 57946 495 - . . scaffold156 GLEAN mRNA 61229 61339 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 61229 61339 20 - . . scaffold156 GLEAN mRNA 58985 59308 0.511907 + . ID=CGI_10026475; scaffold156 WUBlastX LTR_Pao 58985 59308 257 - . . scaffold156 GLEAN mRNA 199576 199645 0.999 - . ID=CGI_10026481; scaffold156 TRF Tandem_Repeat 199576 199645 131 + . . scaffold156 GLEAN mRNA 200623 200651 0.999 - . ID=CGI_10026481; scaffold156 TRF Tandem_Repeat 200623 200651 58 + . . scaffold156 GLEAN mRNA 222952 223231 0.796737 + . ID=CGI_10026483; scaffold156 TRF Tandem_Repeat 222952 223231 305 + . . scaffold156 GLEAN mRNA 238845 239093 0.990897 + . ID=CGI_10026484; scaffold156 WUBlastX DNA_hAT-Tip100 238845 239093 77 - . . scaffold156 GLEAN mRNA 238881 239132 0.990897 + . ID=CGI_10026484; scaffold156 WUBlastX DNA_hAT-Tip100 238881 239132 67 - . . scaffold156 GLEAN mRNA 240837 241619 0.990897 + . ID=CGI_10026484; scaffold156 WUBlastX LINE_R2-Hero 240837 241619 313 + . . scaffold156 GLEAN mRNA 238869 239075 0.990897 + . ID=CGI_10026484; scaffold156 WUBlastX DNA_hAT-Tip100 238869 239075 94 - . . scaffold156 GLEAN mRNA 241119 241619 0.986993 - . ID=CGI_10026485; scaffold156 WUBlastX LINE_R2-Hero 240837 241619 313 + . . scaffold156 GLEAN mRNA 245627 247233 0.986993 - . ID=CGI_10026485; scaffold156 TRF Tandem_Repeat 245627 247233 2586 + . . scaffold156 GLEAN mRNA 245627 247233 0.999351 + . ID=CGI_10026486; scaffold156 TRF Tandem_Repeat 245627 247233 2586 + . . scaffold156 GLEAN mRNA 264617 264667 0.542247 + . ID=CGI_10026488; scaffold156 TRF Tandem_Repeat 264617 264667 102 + . . scaffold156 GLEAN mRNA 265518 265558 0.542247 + . ID=CGI_10026488; scaffold156 TRF Tandem_Repeat 265518 265558 52 + . . scaffold156 GLEAN mRNA 269300 269513 0.542247 + . ID=CGI_10026488; scaffold156 TRF Tandem_Repeat 269300 269513 329 + . . scaffold156 GLEAN mRNA 274820 275104 0.558302 - . ID=CGI_10026489; scaffold156 WUBlastX LINE_CR1-L2 274820 275104 50 + . . scaffold156 GLEAN mRNA 274507 274830 0.558302 - . ID=CGI_10026489; scaffold156 WUBlastX LINE_L2 274507 274830 68 + . . scaffold156 GLEAN mRNA 275181 275453 0.558302 - . ID=CGI_10026489; scaffold156 WUBlastX LINE_L2 275181 275453 37 + . . scaffold156 GLEAN mRNA 274820 275056 0.558302 - . ID=CGI_10026489; scaffold156 WUBlastX LINE_L2 274820 275056 64 + . . scaffold156 GLEAN mRNA 295089 296171 0.999747 - . ID=CGI_10026491; scaffold156 TRF Tandem_Repeat 295089 296171 1384 + . . scaffold156 GLEAN mRNA 298115 298148 0.999747 - . ID=CGI_10026491; scaffold156 TRF Tandem_Repeat 298115 298148 52 + . . scaffold156 GLEAN mRNA 303352 303654 0.999798 - . ID=CGI_10026492; scaffold156 WUBlastX DNA_IS4EU 303352 303654 77 - . . scaffold156 GLEAN mRNA 331580 331609 0.63561 + . ID=CGI_10026496; scaffold156 TRF Tandem_Repeat 331580 331609 51 + . . scaffold156 GLEAN mRNA 328012 328179 0.63561 + . ID=CGI_10026496; scaffold156 WUBlastX LINE_RTE-X 328012 328179 51 - . . scaffold156 GLEAN mRNA 333086 333499 0.63561 + . ID=CGI_10026496; scaffold156 WUBlastX LINE_R2-Hero 333086 333499 350 - . . scaffold156 GLEAN mRNA 328012 328224 0.63561 + . ID=CGI_10026496; scaffold156 WUBlastX LINE_RTE-X 328012 328224 33 - . . scaffold156 GLEAN mRNA 327888 328073 0.63561 + . ID=CGI_10026496; scaffold156 WUBlastX LINE_RTE-X 327888 328073 56 - . . scaffold156 GLEAN mRNA 408882 408966 0.652335 - . ID=CGI_10026499; scaffold156 TRF Tandem_Repeat 408882 408966 152 + . . scaffold156 GLEAN mRNA 409055 409113 0.652335 - . ID=CGI_10026499; scaffold156 TRF Tandem_Repeat 409055 409113 118 + . . scaffold156 GLEAN mRNA 424755 424966 0.652335 - . ID=CGI_10026499; scaffold156 TRF Tandem_Repeat 424755 424966 352 + . . scaffold156 GLEAN mRNA 425567 425736 0.652335 - . ID=CGI_10026499; scaffold156 TRF Tandem_Repeat 425567 425736 184 + . . scaffold156 GLEAN mRNA 409338 410315 0.652335 - . ID=CGI_10026499; scaffold156 TRF Tandem_Repeat 409338 410315 1442 + . . scaffold156 GLEAN mRNA 450400 450452 0.999927 - . ID=CGI_10026501; scaffold156 TRF Tandem_Repeat 450400 450452 106 + . . scaffold156 GLEAN mRNA 469871 470023 0.896096 + . ID=CGI_10026503; scaffold156 TRF Tandem_Repeat 469871 470023 126 + . . scaffold156 GLEAN mRNA 470317 470455 0.896096 + . ID=CGI_10026503; scaffold156 TRF Tandem_Repeat 470317 470455 150 + . . scaffold156 GLEAN mRNA 471907 471941 0.896096 + . ID=CGI_10026503; scaffold156 TRF Tandem_Repeat 471907 471941 52 + . . scaffold156 GLEAN mRNA 485916 485967 0.990447 - . ID=CGI_10026504; scaffold156 TRF Tandem_Repeat 485916 485967 104 + . . scaffold156 GLEAN mRNA 493656 493695 0.990447 - . ID=CGI_10026504; scaffold156 TRF Tandem_Repeat 493656 493695 80 + . . scaffold156 GLEAN mRNA 514210 514895 0.75449 - . ID=CGI_10026506; scaffold156 TRF Tandem_Repeat 514210 514895 1232 + . . scaffold156 GLEAN mRNA 514906 514940 0.75449 - . ID=CGI_10026506; scaffold156 TRF Tandem_Repeat 514906 514940 52 + . . scaffold156 GLEAN mRNA 534159 534189 0.797603 + . ID=CGI_10026507; scaffold156 TRF Tandem_Repeat 534159 534189 62 + . . scaffold156 GLEAN mRNA 539123 539212 0.797603 + . ID=CGI_10026507; scaffold156 TRF Tandem_Repeat 539123 539212 71 + . . scaffold156 GLEAN mRNA 539436 539531 0.797603 + . ID=CGI_10026507; scaffold156 TRF Tandem_Repeat 539436 539531 81 + . . scaffold156 GLEAN mRNA 551570 551912 0.516159 - . ID=CGI_10026508; scaffold156 TRF Tandem_Repeat 551570 551912 315 + . . scaffold156 GLEAN mRNA 551518 551914 0.516159 - . ID=CGI_10026508; scaffold156 TRF Tandem_Repeat 551518 551914 322 + . . scaffold156 GLEAN mRNA 551520 551912 0.516159 - . ID=CGI_10026508; scaffold156 TRF Tandem_Repeat 551520 551912 264 + . . scaffold156 GLEAN mRNA 655802 655840 0.999025 + . ID=CGI_10026514; scaffold156 TRF Tandem_Repeat 655802 655840 78 + . . scaffold156 GLEAN mRNA 659234 659266 0.999025 + . ID=CGI_10026514; scaffold156 TRF Tandem_Repeat 659234 659266 66 + . . scaffold156 GLEAN mRNA 655802 655840 1 - . ID=CGI_10026515; scaffold156 TRF Tandem_Repeat 655802 655840 78 + . . scaffold156 GLEAN mRNA 659234 659266 1 - . ID=CGI_10026515; scaffold156 TRF Tandem_Repeat 659234 659266 66 + . . scaffold156 GLEAN mRNA 680176 680594 0.721042 - . ID=CGI_10026516; scaffold156 TRF Tandem_Repeat 680176 680594 608 + . . scaffold156 GLEAN mRNA 688368 688724 0.721042 - . ID=CGI_10026516; scaffold156 WUBlastX DNA_Kolobok-Hyd 688368 688724 79 - . . scaffold156 GLEAN mRNA 689443 689514 0.721042 - . ID=CGI_10026516; scaffold156 WUBlastX DNA_Kolobok-Hyd 689443 689514 22 - . . scaffold156 GLEAN mRNA 688254 688721 0.721042 - . ID=CGI_10026516; scaffold156 WUBlastX DNA_Kolobok-Hyd 688254 688721 76 - . . scaffold156 GLEAN mRNA 688119 688724 0.721042 - . ID=CGI_10026516; scaffold156 WUBlastX DNA_Kolobok-Hyd 688119 688724 52 - . . scaffold156 GLEAN mRNA 687921 688256 0.721042 - . ID=CGI_10026516; scaffold156 WUBlastX DNA_Kolobok-Hyd 687921 688256 51 - . . scaffold156 GLEAN mRNA 730434 730500 0.463925 - . ID=CGI_10026517; scaffold156 TRF Tandem_Repeat 730434 730500 50 + . . scaffold156 GLEAN mRNA 735764 735799 0.463925 - . ID=CGI_10026517; scaffold156 TRF Tandem_Repeat 735764 735799 54 + . . scaffold156 GLEAN mRNA 723395 723448 0.463925 - . ID=CGI_10026517; scaffold156 WUBlastX LINE_CR1-L2 723395 723448 33 + . . scaffold156 GLEAN mRNA 721739 721972 0.463925 - . ID=CGI_10026517; scaffold156 WUBlastX LINE_L2 721739 721972 49 + . . scaffold156 GLEAN mRNA 723560 723727 0.463925 - . ID=CGI_10026517; scaffold156 WUBlastX LINE_L2 723560 723727 52 + . . scaffold156 GLEAN mRNA 723726 725780 0.463925 - . ID=CGI_10026517; scaffold156 WUBlastX LINE_L2 723726 725780 1152 + . . scaffold156 GLEAN mRNA 725782 726705 0.463925 - . ID=CGI_10026517; scaffold156 WUBlastX LINE_L2 725782 726705 535 + . . scaffold156 GLEAN mRNA 721787 722146 0.463925 - . ID=CGI_10026517; scaffold156 WUBlastX LINE_L2 721787 722146 96 + . . scaffold156 GLEAN mRNA 815016 816153 0.99874 - . ID=CGI_10026525; scaffold156 TRF Tandem_Repeat 815016 816153 2168 + . . scaffold156 GLEAN mRNA 860452 860507 0.979156 + . ID=CGI_10026527; scaffold156 TRF Tandem_Repeat 860452 860507 112 + . . scaffold156 GLEAN mRNA 862350 862387 0.979156 + . ID=CGI_10026527; scaffold156 TRF Tandem_Repeat 862350 862387 67 + . . scaffold156 GLEAN mRNA 880787 880837 0.422519 - . ID=CGI_10026528; scaffold156 TRF Tandem_Repeat 880787 880837 75 + . . scaffold156 GLEAN mRNA 880787 880837 0.422519 - . ID=CGI_10026528; scaffold156 TRF Tandem_Repeat 880787 880837 84 + . . scaffold156 GLEAN mRNA 881519 881580 0.422519 - . ID=CGI_10026528; scaffold156 TRF Tandem_Repeat 881519 881580 124 + . . scaffold156 GLEAN mRNA 888427 888479 0.993928 - . ID=CGI_10026529; scaffold156 TRF Tandem_Repeat 888427 888479 106 + . . scaffold156 GLEAN mRNA 896019 896063 0.999129 + . ID=CGI_10026530; scaffold156 TRF Tandem_Repeat 896019 896063 72 + . . scaffold156 GLEAN mRNA 920956 921003 0.999676 - . ID=CGI_10026534; scaffold156 TRF Tandem_Repeat 920956 921003 96 + . . scaffold156 GLEAN mRNA 937706 937741 0.61099 + . ID=CGI_10026535; scaffold156 TRF Tandem_Repeat 937706 937741 54 + . . scaffold156 GLEAN mRNA 941652 941686 0.61099 + . ID=CGI_10026535; scaffold156 TRF Tandem_Repeat 941652 941686 70 + . . scaffold156 GLEAN mRNA 949649 949690 0.61099 + . ID=CGI_10026535; scaffold156 TRF Tandem_Repeat 949649 949690 66 + . . scaffold156 GLEAN mRNA 957402 957544 0.61099 + . ID=CGI_10026535; scaffold156 TRF Tandem_Repeat 957402 957544 83 + . . scaffold156 GLEAN mRNA 984011 984038 0.538231 - . ID=CGI_10026536; scaffold156 TRF Tandem_Repeat 984011 984038 56 + . . scaffold156 GLEAN mRNA 1039600 1039666 0.601744 - . ID=CGI_10026538; scaffold156 TRF Tandem_Repeat 1039600 1039666 134 + . . scaffold156 GLEAN mRNA 1042559 1042600 0.601744 - . ID=CGI_10026538; scaffold156 TRF Tandem_Repeat 1042559 1042600 84 + . . scaffold156 GLEAN mRNA 1100449 1101780 0.982183 - . ID=CGI_10026543; scaffold156 WUBlastX LTR_Gypsy 1100449 1101780 536 - . . scaffold156 GLEAN mRNA 1100653 1103382 0.982183 - . ID=CGI_10026543; scaffold156 WUBlastX LTR_Gypsy-Cigr 1100653 1103382 1878 - . . scaffold156 GLEAN mRNA 1103361 1103792 0.982183 - . ID=CGI_10026543; scaffold156 WUBlastX LTR_Gypsy 1103361 1103792 69 - . . scaffold156 GLEAN mRNA 1103526 1103792 0.982183 - . ID=CGI_10026543; scaffold156 WUBlastX LTR_Gypsy 1103526 1103792 80 - . . scaffold156 GLEAN mRNA 1112150 1112193 0.852291 + . ID=CGI_10026544; scaffold156 TRF Tandem_Repeat 1112150 1112193 88 + . . scaffold145 GLEAN mRNA 37930 37964 0.999624 + . ID=CGI_10026546; scaffold145 TRF Tandem_Repeat 37930 37964 70 + . . scaffold145 GLEAN mRNA 41377 41415 0.999624 + . ID=CGI_10026546; scaffold145 TRF Tandem_Repeat 41377 41415 69 + . . scaffold145 GLEAN mRNA 43047 43095 0.999624 + . ID=CGI_10026546; scaffold145 TRF Tandem_Repeat 43047 43095 98 + . . scaffold145 GLEAN mRNA 45007 45033 0.999624 + . ID=CGI_10026546; scaffold145 TRF Tandem_Repeat 45007 45033 54 + . . scaffold145 GLEAN mRNA 56735 56776 0.999624 + . ID=CGI_10026546; scaffold145 TRF Tandem_Repeat 56735 56776 57 + . . scaffold145 GLEAN mRNA 61700 61736 0.999624 + . ID=CGI_10026546; scaffold145 TRF Tandem_Repeat 61700 61736 67 + . . scaffold145 GLEAN mRNA 79095 79204 0.771672 + . ID=CGI_10026547; scaffold145 TRF Tandem_Repeat 79095 79204 132 + . . scaffold145 GLEAN mRNA 204796 204846 0.997487 + . ID=CGI_10026552; scaffold145 TRF Tandem_Repeat 204796 204846 102 + . . scaffold145 GLEAN mRNA 206509 206534 0.997487 + . ID=CGI_10026552; scaffold145 TRF Tandem_Repeat 206509 206534 52 + . . scaffold145 GLEAN mRNA 317843 318291 0.542969 - . ID=CGI_10026554; scaffold145 TRF Tandem_Repeat 317843 318291 207 + . . scaffold145 GLEAN mRNA 317841 318291 0.542969 - . ID=CGI_10026554; scaffold145 TRF Tandem_Repeat 317841 318291 301 + . . scaffold145 GLEAN mRNA 318638 319278 0.542969 - . ID=CGI_10026554; scaffold145 TRF Tandem_Repeat 318638 319278 603 + . . scaffold145 GLEAN mRNA 318644 318765 0.542969 - . ID=CGI_10026554; scaffold145 TRF Tandem_Repeat 318644 318765 140 + . . scaffold145 GLEAN mRNA 349014 349047 0.998765 - . ID=CGI_10026555; scaffold145 TRF Tandem_Repeat 349014 349047 68 + . . scaffold145 GLEAN mRNA 362995 363115 0.998765 - . ID=CGI_10026555; scaffold145 TRF Tandem_Repeat 362995 363115 233 + . . scaffold145 GLEAN mRNA 366150 366906 0.998765 - . ID=CGI_10026555; scaffold145 TRF Tandem_Repeat 366150 366906 1119 + . . scaffold145 GLEAN mRNA 370990 371123 0.998765 - . ID=CGI_10026555; scaffold145 TRF Tandem_Repeat 370990 371123 76 + . . scaffold145 GLEAN mRNA 391820 392485 0.61414 + . ID=CGI_10026556; scaffold145 WUBlastX LINE_L1-Tx1 391820 392485 35 + . . scaffold145 GLEAN mRNA 397673 397841 0.61414 + . ID=CGI_10026556; scaffold145 TRF Tandem_Repeat 397673 397841 257 + . . scaffold145 GLEAN mRNA 420307 420502 0.648525 - . ID=CGI_10026557; scaffold145 TRF Tandem_Repeat 420307 420502 326 + . . scaffold145 GLEAN mRNA 420564 421077 0.648525 - . ID=CGI_10026557; scaffold145 TRF Tandem_Repeat 420564 421077 866 + . . scaffold145 GLEAN mRNA 422330 422572 0.648525 - . ID=CGI_10026557; scaffold145 WUBlastX DNA_TcMar-Tc1 422330 422572 23 + . . scaffold145 GLEAN mRNA 422336 422539 0.648525 - . ID=CGI_10026557; scaffold145 WUBlastX DNA_TcMar-Tc1 422336 422539 31 + . . scaffold145 GLEAN mRNA 437294 437338 0.648525 - . ID=CGI_10026557; scaffold145 TRF Tandem_Repeat 437294 437338 90 + . . scaffold145 GLEAN mRNA 452251 452318 0.891434 - . ID=CGI_10026558; scaffold145 TRF Tandem_Repeat 452251 452318 118 + . . scaffold145 GLEAN mRNA 453156 453216 0.891434 - . ID=CGI_10026558; scaffold145 TRF Tandem_Repeat 453156 453216 122 + . . scaffold145 GLEAN mRNA 647423 647659 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_TcMar-Fot1 647423 647659 153 + . . scaffold145 GLEAN mRNA 649658 650116 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_TcMar-Fot1 649658 650116 68 + . . scaffold145 GLEAN mRNA 642490 642894 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_Crypton 642490 642894 88 - . . scaffold145 GLEAN mRNA 649697 650233 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_TcMar-Fot1 649697 650233 39 + . . scaffold145 GLEAN mRNA 649661 649957 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_TcMar-Fot1 649661 649957 72 + . . scaffold145 GLEAN mRNA 649129 649461 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_TcMar-Fot1 649129 649461 66 + . . scaffold145 GLEAN mRNA 648857 649141 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_TcMar-Fot1 648857 649141 80 + . . scaffold145 GLEAN mRNA 649168 649326 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_TcMar-Fot1 649168 649326 77 + . . scaffold145 GLEAN mRNA 649353 649658 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_TcMar-Fot1 649353 649658 218 + . . scaffold145 GLEAN mRNA 649664 649900 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_TcMar-Fot1 649664 649900 180 + . . scaffold145 GLEAN mRNA 642933 643199 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_Crypton 642933 643199 88 - . . scaffold145 GLEAN mRNA 670778 670824 0.569648 - . ID=CGI_10026560; scaffold145 TRF Tandem_Repeat 670778 670824 67 + . . scaffold145 GLEAN mRNA 834833 835276 0.97533 - . ID=CGI_10026566; scaffold145 WUBlastX LINE_L2 834833 835276 33 - . . scaffold145 GLEAN mRNA 845652 845698 0.515241 + . ID=CGI_10026567; scaffold145 TRF Tandem_Repeat 845652 845698 67 + . . scaffold145 GLEAN mRNA 856774 857673 0.515241 + . ID=CGI_10026567; scaffold145 TRF Tandem_Repeat 856774 857673 1710 + . . scaffold145 GLEAN mRNA 858411 858674 0.515241 + . ID=CGI_10026567; scaffold145 TRF Tandem_Repeat 858411 858674 510 + . . scaffold145 GLEAN mRNA 870241 871034 0.515241 + . ID=CGI_10026567; scaffold145 TRF Tandem_Repeat 870241 871034 1408 + . . scaffold145 GLEAN mRNA 870241 871034 1 - . ID=CGI_10026568; scaffold145 TRF Tandem_Repeat 870241 871034 1408 + . . scaffold145 GLEAN mRNA 971463 972088 0.99924 + . ID=CGI_10026570; scaffold145 TRF Tandem_Repeat 971463 972088 906 + . . scaffold145 GLEAN mRNA 1105004 1105035 0.306549 + . ID=CGI_10026571; scaffold145 TRF Tandem_Repeat 1105004 1105035 64 + . . scaffold145 GLEAN mRNA 1116828 1116890 0.306549 + . ID=CGI_10026571; scaffold145 TRF Tandem_Repeat 1116828 1116890 83 + . . scaffold145 GLEAN mRNA 1124739 1124811 1 + . ID=CGI_10026573; scaffold145 TRF Tandem_Repeat 1124739 1124811 112 + . . scaffold145 GLEAN mRNA 1125101 1125202 1 + . ID=CGI_10026573; scaffold145 TRF Tandem_Repeat 1125101 1125202 84 + . . scaffold145 GLEAN mRNA 1130302 1130353 0.99999 - . ID=CGI_10026574; scaffold145 TRF Tandem_Repeat 1130302 1130353 97 + . . scaffold145 GLEAN mRNA 1137805 1138182 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1137805 1138182 206 - . . scaffold145 GLEAN mRNA 1137508 1137801 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1137508 1137801 35 - . . scaffold145 GLEAN mRNA 1138262 1138495 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-X 1138262 1138495 34 - . . scaffold145 GLEAN mRNA 1137631 1138191 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1137631 1138191 85 - . . scaffold145 GLEAN mRNA 1138274 1138450 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_Jockey 1138274 1138450 49 - . . scaffold145 GLEAN mRNA 1137426 1137560 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1137426 1137560 63 - . . scaffold145 GLEAN mRNA 1137375 1137575 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1137375 1137575 41 - . . scaffold145 GLEAN mRNA 1137736 1138227 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1137736 1138227 131 - . . scaffold145 GLEAN mRNA 1137477 1137575 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1137477 1137575 56 - . . scaffold145 GLEAN mRNA 1138259 1138369 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1138259 1138369 95 - . . scaffold145 GLEAN mRNA 1139296 1139721 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1139296 1139721 32 - . . scaffold145 GLEAN mRNA 1138196 1138411 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1138196 1138411 67 - . . scaffold145 GLEAN mRNA 1137332 1137385 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1137332 1137385 29 - . . scaffold145 GLEAN mRNA 1138262 1138408 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1138262 1138408 68 - . . scaffold145 GLEAN mRNA 1139494 1139739 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1139494 1139739 35 - . . scaffold145 GLEAN mRNA 1139599 1139739 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1139599 1139739 66 - . . scaffold145 GLEAN mRNA 1150006 1150250 0.998984 + . ID=CGI_10026576; scaffold145 TRF Tandem_Repeat 1150006 1150250 400 + . . scaffold145 GLEAN mRNA 1159803 1159844 0.998984 + . ID=CGI_10026576; scaffold145 TRF Tandem_Repeat 1159803 1159844 68 + . . scaffold145 GLEAN mRNA 1159804 1159841 0.998984 + . ID=CGI_10026576; scaffold145 TRF Tandem_Repeat 1159804 1159841 51 + . . scaffold145 GLEAN mRNA 1152131 1152340 0.998984 + . ID=CGI_10026576; scaffold145 WUBlastX LTR_Gypsy 1152131 1152340 21 + . . scaffold145 GLEAN mRNA 1152612 1154594 0.998984 + . ID=CGI_10026576; scaffold145 WUBlastX LTR_DIRS 1152612 1154594 780 + . . scaffold145 GLEAN mRNA 1154486 1155385 0.998984 + . ID=CGI_10026576; scaffold145 WUBlastX LTR_DIRS 1154486 1155385 382 + . . scaffold145 GLEAN mRNA 1152507 1154252 0.998984 + . ID=CGI_10026576; scaffold145 WUBlastX LTR_DIRS 1152507 1154252 908 + . . scaffold145 GLEAN mRNA 1152318 1153244 0.998984 + . ID=CGI_10026576; scaffold145 WUBlastX LTR_Gypsy 1152318 1153244 32 + . . scaffold313 GLEAN mRNA 114991 115058 0.278301 + . ID=CGI_10026583; scaffold313 TRF Tandem_Repeat 114991 115058 113 + . . scaffold313 GLEAN mRNA 134319 134482 0.83601 - . ID=CGI_10026584; scaffold313 WUBlastX LINE_RTE-X 134297 134482 93 + . . scaffold313 GLEAN mRNA 134319 134446 0.83601 - . ID=CGI_10026584; scaffold313 WUBlastX LINE_RTE-X 134306 134446 95 + . . scaffold313 GLEAN mRNA 134319 134479 0.83601 - . ID=CGI_10026584; scaffold313 WUBlastX LINE_RTE-X 134153 134479 70 + . . scaffold313 GLEAN mRNA 134319 134515 0.83601 - . ID=CGI_10026584; scaffold313 WUBlastX LINE_RTE-X 134315 134515 78 + . . scaffold313 GLEAN mRNA 134319 134557 0.83601 - . ID=CGI_10026584; scaffold313 WUBlastX LINE_RTE-X 134297 134557 77 + . . scaffold313 GLEAN mRNA 154336 155241 0.999929 - . ID=CGI_10026586; scaffold313 WUBlastX LTR_Gypsy 154336 155241 74 - . . scaffold313 GLEAN mRNA 154579 154962 0.999929 - . ID=CGI_10026586; scaffold313 WUBlastX LTR_Gypsy 154579 154962 82 - . . scaffold313 GLEAN mRNA 208448 208473 0.639977 + . ID=CGI_10026588; scaffold313 TRF Tandem_Repeat 208448 208473 52 + . . scaffold313 GLEAN mRNA 210600 210647 0.639977 + . ID=CGI_10026588; scaffold313 TRF Tandem_Repeat 210600 210647 55 + . . scaffold313 GLEAN mRNA 230393 230439 0.659826 + . ID=CGI_10026590; scaffold313 TRF Tandem_Repeat 230393 230439 94 + . . scaffold313 GLEAN mRNA 255376 255891 0.971004 + . ID=CGI_10026593; scaffold313 TRF Tandem_Repeat 255376 255891 622 + . . scaffold313 GLEAN mRNA 255454 255891 0.971004 + . ID=CGI_10026593; scaffold313 TRF Tandem_Repeat 255454 255891 687 + . . scaffold313 GLEAN mRNA 256500 256539 0.971004 + . ID=CGI_10026593; scaffold313 TRF Tandem_Repeat 256500 256539 71 + . . scaffold313 GLEAN mRNA 303856 303906 0.999995 + . ID=CGI_10026596; scaffold313 TRF Tandem_Repeat 303856 303906 95 + . . scaffold313 GLEAN mRNA 307519 307765 0.999995 + . ID=CGI_10026596; scaffold313 TRF Tandem_Repeat 307519 307765 173 + . . scaffold313 GLEAN mRNA 307608 307740 0.999995 + . ID=CGI_10026596; scaffold313 TRF Tandem_Repeat 307608 307740 127 + . . scaffold313 GLEAN mRNA 362526 362564 0.9998 + . ID=CGI_10026598; scaffold313 TRF Tandem_Repeat 362526 362564 60 + . . scaffold313 GLEAN mRNA 383772 383996 0.907266 + . ID=CGI_10026599; scaffold313 TRF Tandem_Repeat 383772 383996 227 + . . scaffold313 GLEAN mRNA 394411 394467 0.999928 + . ID=CGI_10026601; scaffold313 TRF Tandem_Repeat 394411 394467 105 + . . scaffold313 GLEAN mRNA 407823 407863 0.675929 + . ID=CGI_10026603; scaffold313 TRF Tandem_Repeat 407823 407863 82 + . . scaffold313 GLEAN mRNA 408652 408696 0.675929 + . ID=CGI_10026603; scaffold313 TRF Tandem_Repeat 408652 408696 81 + . . scaffold313 GLEAN mRNA 410022 410060 0.675929 + . ID=CGI_10026603; scaffold313 TRF Tandem_Repeat 410022 410060 53 + . . scaffold313 GLEAN mRNA 418123 418389 0.675929 + . ID=CGI_10026603; scaffold313 WUBlastX DNA_Harbinger 418123 418389 33 - . . scaffold313 GLEAN mRNA 418418 418702 0.675929 + . ID=CGI_10026603; scaffold313 WUBlastX DNA_Harbinger 418418 418702 56 - . . scaffold313 GLEAN mRNA 428884 428935 0.994822 + . ID=CGI_10026604; scaffold313 TRF Tandem_Repeat 428884 428935 104 + . . scaffold313 GLEAN mRNA 431331 431620 0.994822 + . ID=CGI_10026604; scaffold313 TRF Tandem_Repeat 431331 431620 424 + . . scaffold313 GLEAN mRNA 432262 432377 0.994822 + . ID=CGI_10026604; scaffold313 TRF Tandem_Repeat 432262 432377 169 + . . scaffold313 GLEAN mRNA 432262 432377 0.994822 + . ID=CGI_10026604; scaffold313 TRF Tandem_Repeat 432262 432377 181 + . . scaffold313 GLEAN mRNA 458787 458838 0.734544 + . ID=CGI_10026606; scaffold313 TRF Tandem_Repeat 458787 458838 104 + . . scaffold313 GLEAN mRNA 473049 473425 0.750802 + . ID=CGI_10026607; scaffold313 TRF Tandem_Repeat 473049 473425 459 + . . scaffold313 GLEAN mRNA 473049 473434 0.750802 + . ID=CGI_10026607; scaffold313 TRF Tandem_Repeat 473049 473434 529 + . . scaffold313 GLEAN mRNA 476063 476638 0.750802 + . ID=CGI_10026607; scaffold313 TRF Tandem_Repeat 476063 476638 640 + . . scaffold313 GLEAN mRNA 489966 490084 0.750802 + . ID=CGI_10026607; scaffold313 TRF Tandem_Repeat 489966 490084 220 + . . scaffold313 GLEAN mRNA 489966 490084 0.614072 - . ID=CGI_10026608; scaffold313 TRF Tandem_Repeat 489966 490084 220 + . . scaffold313 GLEAN mRNA 527443 528117 0.94186 + . ID=CGI_10026610; scaffold313 TRF Tandem_Repeat 527443 528117 1111 + . . scaffold313 GLEAN mRNA 619507 619545 0.647784 - . ID=CGI_10026614; scaffold313 TRF Tandem_Repeat 619507 619545 60 + . . scaffold313 GLEAN mRNA 614440 614646 0.647784 - . ID=CGI_10026614; scaffold313 WUBlastX DNA_En-Spm 614440 614646 67 - . . scaffold313 GLEAN mRNA 614518 614643 0.647784 - . ID=CGI_10026614; scaffold313 WUBlastX DNA_En-Spm 614518 614643 74 - . . scaffold313 GLEAN mRNA 615204 615356 0.647784 - . ID=CGI_10026614; scaffold313 WUBlastX DNA_En-Spm 615204 615356 67 - . . scaffold313 GLEAN mRNA 614834 614965 0.647784 - . ID=CGI_10026614; scaffold313 WUBlastX DNA_En-Spm 614834 614965 91 - . . scaffold313 GLEAN mRNA 614356 614649 0.647784 - . ID=CGI_10026614; scaffold313 WUBlastX DNA_En-Spm 614356 614649 47 - . . scaffold313 GLEAN mRNA 614837 615205 0.647784 - . ID=CGI_10026614; scaffold313 WUBlastX DNA_En-Spm 614837 615205 64 - . . scaffold313 GLEAN mRNA 614837 615004 0.647784 - . ID=CGI_10026614; scaffold313 WUBlastX DNA_En-Spm 614837 615004 70 - . . scaffold313 GLEAN mRNA 667345 667658 1 - . ID=CGI_10026617; scaffold313 TRF Tandem_Repeat 667345 667658 479 + . . scaffold313 GLEAN mRNA 668284 668530 1 - . ID=CGI_10026617; scaffold313 TRF Tandem_Repeat 668284 668530 399 + . . scaffold313 GLEAN mRNA 671201 672032 1 - . ID=CGI_10026617; scaffold313 TRF Tandem_Repeat 671201 672032 1527 + . . scaffold313 GLEAN mRNA 679904 680548 0.369345 - . ID=CGI_10026618; scaffold313 TRF Tandem_Repeat 679904 680548 888 + . . scaffold313 GLEAN mRNA 680421 680509 0.369345 - . ID=CGI_10026618; scaffold313 TRF Tandem_Repeat 680421 680509 52 + . . scaffold313 GLEAN mRNA 684080 684499 0.369345 - . ID=CGI_10026618; scaffold313 TRF Tandem_Repeat 684080 684499 691 + . . scaffold313 GLEAN mRNA 684080 684499 0.369345 - . ID=CGI_10026618; scaffold313 TRF Tandem_Repeat 684080 684499 687 + . . scaffold313 GLEAN mRNA 679149 679682 0.369345 - . ID=CGI_10026618; scaffold313 WUBlastX LINE_R2-Hero 679149 679682 164 + . . scaffold313 GLEAN mRNA 678458 678523 0.369345 - . ID=CGI_10026618; scaffold313 WUBlastX LINE_R2-Hero 678458 678523 24 + . . scaffold313 GLEAN mRNA 695662 695901 0.742187 + . ID=CGI_10026620; scaffold313 TRF Tandem_Repeat 695662 695901 300 + . . scaffold313 GLEAN mRNA 696433 696565 0.742187 + . ID=CGI_10026620; scaffold313 TRF Tandem_Repeat 696433 696565 239 + . . scaffold313 GLEAN mRNA 709807 709851 0.742187 + . ID=CGI_10026620; scaffold313 TRF Tandem_Repeat 709807 709851 90 + . . scaffold313 GLEAN mRNA 712695 712948 0.742187 + . ID=CGI_10026620; scaffold313 TRF Tandem_Repeat 712695 712948 499 + . . scaffold313 GLEAN mRNA 716060 716194 0.742187 + . ID=CGI_10026620; scaffold313 TRF Tandem_Repeat 716060 716194 99 + . . scaffold313 GLEAN mRNA 722448 722485 0.742187 + . ID=CGI_10026620; scaffold313 TRF Tandem_Repeat 722448 722485 67 + . . scaffold313 GLEAN mRNA 741706 741802 0.452737 + . ID=CGI_10026622; scaffold313 TRF Tandem_Repeat 741706 741802 176 + . . scaffold313 GLEAN mRNA 750804 750851 0.452737 + . ID=CGI_10026622; scaffold313 TRF Tandem_Repeat 750804 750851 96 + . . scaffold313 GLEAN mRNA 762072 762417 0.452737 + . ID=CGI_10026622; scaffold313 TRF Tandem_Repeat 762072 762417 461 + . . scaffold313 GLEAN mRNA 762072 762570 0.452737 + . ID=CGI_10026622; scaffold313 TRF Tandem_Repeat 762072 762570 615 + . . scaffold313 GLEAN mRNA 762072 762570 0.452737 + . ID=CGI_10026622; scaffold313 TRF Tandem_Repeat 762072 762570 572 + . . scaffold313 GLEAN mRNA 762414 762570 0.452737 + . ID=CGI_10026622; scaffold313 TRF Tandem_Repeat 762414 762570 221 + . . scaffold313 GLEAN mRNA 769208 769455 0.452737 + . ID=CGI_10026622; scaffold313 TRF Tandem_Repeat 769208 769455 406 + . . scaffold313 GLEAN mRNA 758321 759307 0.452737 + . ID=CGI_10026622; scaffold313 WUBlastX DNA_Crypton 758321 759307 88 + . . scaffold313 GLEAN mRNA 758555 759139 0.452737 + . ID=CGI_10026622; scaffold313 WUBlastX DNA_Crypton 758555 759139 123 + . . scaffold313 GLEAN mRNA 835728 835860 0.99973 - . ID=CGI_10026627; scaffold313 TRF Tandem_Repeat 835728 835860 136 + . . scaffold313 GLEAN mRNA 944957 945015 0.998141 + . ID=CGI_10026628; scaffold313 TRF Tandem_Repeat 944957 945015 118 + . . scaffold313 GLEAN mRNA 947556 947617 0.998141 + . ID=CGI_10026628; scaffold313 TRF Tandem_Repeat 947556 947617 124 + . . scaffold313 GLEAN mRNA 960902 960943 0.950119 + . ID=CGI_10026629; scaffold313 TRF Tandem_Repeat 960902 960943 84 + . . scaffold313 GLEAN mRNA 964603 964652 0.950119 + . ID=CGI_10026629; scaffold313 TRF Tandem_Repeat 964603 964652 100 + . . scaffold313 GLEAN mRNA 965262 965293 0.950119 + . ID=CGI_10026629; scaffold313 TRF Tandem_Repeat 965262 965293 64 + . . scaffold313 GLEAN mRNA 965662 965742 0.950119 + . ID=CGI_10026629; scaffold313 TRF Tandem_Repeat 965662 965742 162 + . . scaffold313 GLEAN mRNA 986435 986475 0.701437 + . ID=CGI_10026631; scaffold313 TRF Tandem_Repeat 986435 986475 73 + . . scaffold313 GLEAN mRNA 1008225 1008271 0.826791 - . ID=CGI_10026632; scaffold313 TRF Tandem_Repeat 1008225 1008271 51 + . . scaffold313 GLEAN mRNA 1018041 1018093 0.354197 - . ID=CGI_10026633; scaffold313 TRF Tandem_Repeat 1018041 1018093 106 + . . scaffold313 GLEAN mRNA 1025299 1025352 0.354197 - . ID=CGI_10026633; scaffold313 TRF Tandem_Repeat 1025299 1025352 72 + . . scaffold313 GLEAN mRNA 1024006 1024290 0.354197 - . ID=CGI_10026633; scaffold313 WUBlastX LTR_Ngaro 1024006 1024290 99 - . . scaffold313 GLEAN mRNA 1023659 1024000 0.354197 - . ID=CGI_10026633; scaffold313 WUBlastX LTR_Ngaro 1023659 1024000 111 - . . scaffold313 GLEAN mRNA 1024363 1024755 0.354197 - . ID=CGI_10026633; scaffold313 WUBlastX LTR_Ngaro 1024363 1024755 127 - . . scaffold313 GLEAN mRNA 1023469 1023642 0.354197 - . ID=CGI_10026633; scaffold313 WUBlastX LTR_Ngaro 1023469 1023642 27 - . . scaffold313 GLEAN mRNA 1019225 1019416 0.354197 - . ID=CGI_10026633; scaffold313 WUBlastX LINE_L1-Tx1 1019225 1019416 71 - . . scaffold313 GLEAN mRNA 1018790 1019044 0.354197 - . ID=CGI_10026633; scaffold313 WUBlastX LINE_L1-Tx1 1018790 1019044 41 - . . scaffold313 GLEAN mRNA 1019050 1019100 0.354197 - . ID=CGI_10026633; scaffold313 WUBlastX LINE_L1-Tx1 1019050 1019100 20 - . . scaffold313 GLEAN mRNA 1018877 1019080 0.354197 - . ID=CGI_10026633; scaffold313 WUBlastX LINE_L1-Tx1 1018877 1019080 52 - . . scaffold313 GLEAN mRNA 1022887 1023069 0.354197 - . ID=CGI_10026633; scaffold313 WUBlastX LTR_Ngaro 1022887 1023069 30 - . . scaffold313 GLEAN mRNA 1050358 1050398 0.531521 - . ID=CGI_10026634; scaffold313 TRF Tandem_Repeat 1050358 1050398 82 + . . scaffold313 GLEAN mRNA 1086122 1086166 0.999415 + . ID=CGI_10026637; scaffold313 TRF Tandem_Repeat 1086122 1086166 90 + . . scaffold313 GLEAN mRNA 1100324 1100348 0.371399 + . ID=CGI_10026638; scaffold313 TRF Tandem_Repeat 1100324 1100348 50 + . . scaffold313 GLEAN mRNA 1115559 1115608 0.999895 + . ID=CGI_10026639; scaffold313 TRF Tandem_Repeat 1115559 1115608 100 + . . scaffold313 GLEAN mRNA 1116307 1116350 0.999895 + . ID=CGI_10026639; scaffold313 TRF Tandem_Repeat 1116307 1116350 88 + . . scaffold313 GLEAN mRNA 1126120 1126199 0.999895 + . ID=CGI_10026639; scaffold313 TRF Tandem_Repeat 1126120 1126199 115 + . . scaffold313 GLEAN mRNA 1127123 1127334 0.999895 + . ID=CGI_10026639; scaffold313 TRF Tandem_Repeat 1127123 1127334 316 + . . scaffold313 GLEAN mRNA 1141372 1141713 0.91163 - . ID=CGI_10026640; scaffold313 WUBlastX LTR_Pao 1141372 1141713 55 - . . scaffold313 GLEAN mRNA 1141249 1141578 0.91163 - . ID=CGI_10026640; scaffold313 WUBlastX LTR_Pao 1141249 1141578 61 - . . scaffold313 GLEAN mRNA 1159080 1159121 0.937426 + . ID=CGI_10026641; scaffold313 TRF Tandem_Repeat 1159080 1159121 75 + . . scaffold313 GLEAN mRNA 1167844 1167862 0.937426 + . ID=CGI_10026641; scaffold313 TRF Tandem_Repeat 1167844 1167994 293 + . . scaffold313 GLEAN mRNA 1188840 1189091 0.492755 + . ID=CGI_10026643; scaffold313 WUBlastX LINE_RTE-X 1188840 1189091 43 - . . scaffold313 GLEAN mRNA 1189414 1190073 0.492755 + . ID=CGI_10026643; scaffold313 WUBlastX LINE_RTE-X 1189414 1190073 36 - . . scaffold313 GLEAN mRNA 1190183 1190257 0.492755 + . ID=CGI_10026643; scaffold313 WUBlastX LINE_RTE-X 1190183 1190257 49 - . . scaffold313 GLEAN mRNA 1189761 1189901 0.492755 + . ID=CGI_10026643; scaffold313 WUBlastX LINE_RTE-X 1189761 1189901 66 - . . scaffold313 GLEAN mRNA 1190150 1190269 0.492755 + . ID=CGI_10026643; scaffold313 WUBlastX LINE_RTE-X 1190150 1190269 34 - . . scaffold313 GLEAN mRNA 1189906 1190025 0.492755 + . ID=CGI_10026643; scaffold313 WUBlastX LINE_RTE-X 1189906 1190025 41 - . . scaffold313 GLEAN mRNA 1190177 1190278 0.492755 + . ID=CGI_10026643; scaffold313 WUBlastX LINE_RTE-X 1190177 1190278 42 - . . scaffold53 GLEAN mRNA 62273 62692 0.999895 - . ID=CGI_10026648; scaffold53 WUBlastX LINE_L2 62273 62692 32 - . . scaffold53 GLEAN mRNA 69430 69455 0.981118 + . ID=CGI_10026649; scaffold53 TRF Tandem_Repeat 69430 69455 52 + . . scaffold53 GLEAN mRNA 84576 84640 0.981118 + . ID=CGI_10026649; scaffold53 TRF Tandem_Repeat 84576 84640 130 + . . scaffold53 GLEAN mRNA 87537 87594 0.981118 + . ID=CGI_10026649; scaffold53 TRF Tandem_Repeat 87537 87594 116 + . . scaffold53 GLEAN mRNA 89959 90014 0.981118 + . ID=CGI_10026649; scaffold53 TRF Tandem_Repeat 89959 90014 112 + . . scaffold53 GLEAN mRNA 91904 91952 0.981118 + . ID=CGI_10026649; scaffold53 TRF Tandem_Repeat 91904 91952 80 + . . scaffold53 GLEAN mRNA 106728 106803 0.981118 + . ID=CGI_10026649; scaffold53 TRF Tandem_Repeat 106728 106803 152 + . . scaffold53 GLEAN mRNA 111618 111907 0.981118 + . ID=CGI_10026649; scaffold53 TRF Tandem_Repeat 111618 111907 102 + . . scaffold53 GLEAN mRNA 111587 111981 0.981118 + . ID=CGI_10026649; scaffold53 TRF Tandem_Repeat 111587 111981 745 + . . scaffold53 GLEAN mRNA 111984 114047 0.981118 + . ID=CGI_10026649; scaffold53 WUBlastX LINE_RTE-X 111984 114047 851 + . . scaffold53 GLEAN mRNA 112083 114446 0.981118 + . ID=CGI_10026649; scaffold53 WUBlastX LINE_RTE-X 112083 114446 585 + . . scaffold53 GLEAN mRNA 116615 116647 0.981118 + . ID=CGI_10026649; scaffold53 TRF Tandem_Repeat 116615 116647 66 + . . scaffold53 GLEAN mRNA 140529 140586 0.539131 + . ID=CGI_10026650; scaffold53 TRF Tandem_Repeat 140529 140586 116 + . . scaffold53 GLEAN mRNA 145838 146088 0.539131 + . ID=CGI_10026650; scaffold53 TRF Tandem_Repeat 145838 146088 394 + . . scaffold53 GLEAN mRNA 150795 150858 0.539131 + . ID=CGI_10026650; scaffold53 TRF Tandem_Repeat 150795 150858 101 + . . scaffold53 GLEAN mRNA 152989 153042 0.539131 + . ID=CGI_10026650; scaffold53 TRF Tandem_Repeat 152989 153042 101 + . . scaffold53 GLEAN mRNA 153868 153905 0.539131 + . ID=CGI_10026650; scaffold53 TRF Tandem_Repeat 153868 153905 53 + . . scaffold53 GLEAN mRNA 163143 163181 0.539131 + . ID=CGI_10026650; scaffold53 TRF Tandem_Repeat 163143 163181 71 + . . scaffold53 GLEAN mRNA 163514 163543 0.539131 + . ID=CGI_10026650; scaffold53 TRF Tandem_Repeat 163514 163543 60 + . . scaffold53 GLEAN mRNA 165146 165179 0.539131 + . ID=CGI_10026650; scaffold53 TRF Tandem_Repeat 165146 165179 68 + . . scaffold53 GLEAN mRNA 166393 166454 0.539131 + . ID=CGI_10026650; scaffold53 TRF Tandem_Repeat 166393 166454 56 + . . scaffold53 GLEAN mRNA 166366 166473 0.539131 + . ID=CGI_10026650; scaffold53 TRF Tandem_Repeat 166366 166473 175 + . . scaffold53 GLEAN mRNA 167296 167362 0.539131 + . ID=CGI_10026650; scaffold53 TRF Tandem_Repeat 167296 167362 134 + . . scaffold53 GLEAN mRNA 225552 225588 1 - . ID=CGI_10026654; scaffold53 TRF Tandem_Repeat 225552 225588 56 + . . scaffold53 GLEAN mRNA 230935 230988 1 - . ID=CGI_10026654; scaffold53 TRF Tandem_Repeat 230935 230988 101 + . . scaffold53 GLEAN mRNA 268793 268829 0.650889 + . ID=CGI_10026656; scaffold53 TRF Tandem_Repeat 268793 268829 74 + . . scaffold53 GLEAN mRNA 357035 357070 0.968668 + . ID=CGI_10026658; scaffold53 TRF Tandem_Repeat 357035 357070 72 + . . scaffold53 GLEAN mRNA 360108 360153 0.968668 + . ID=CGI_10026658; scaffold53 TRF Tandem_Repeat 360108 360153 92 + . . scaffold53 GLEAN mRNA 363402 363457 0.968668 + . ID=CGI_10026658; scaffold53 TRF Tandem_Repeat 363402 363457 105 + . . scaffold53 GLEAN mRNA 364660 364693 0.968668 + . ID=CGI_10026658; scaffold53 TRF Tandem_Repeat 364660 364693 61 + . . scaffold53 GLEAN mRNA 371208 371781 0.968668 + . ID=CGI_10026658; scaffold53 TRF Tandem_Repeat 371208 371781 421 + . . scaffold53 GLEAN mRNA 372889 372923 0.968668 + . ID=CGI_10026658; scaffold53 TRF Tandem_Repeat 372889 372923 61 + . . scaffold53 GLEAN mRNA 374096 374127 0.968668 + . ID=CGI_10026658; scaffold53 TRF Tandem_Repeat 374096 374127 57 + . . scaffold53 GLEAN mRNA 375839 375926 0.968668 + . ID=CGI_10026658; scaffold53 TRF Tandem_Repeat 375839 375926 54 + . . scaffold53 GLEAN mRNA 375827 375913 0.968668 + . ID=CGI_10026658; scaffold53 TRF Tandem_Repeat 375827 375913 86 + . . scaffold53 GLEAN mRNA 385398 385584 0.998697 + . ID=CGI_10026659; scaffold53 TRF Tandem_Repeat 385398 385584 95 + . . scaffold53 GLEAN mRNA 388282 388370 0.998697 + . ID=CGI_10026659; scaffold53 TRF Tandem_Repeat 388282 388370 90 + . . scaffold53 GLEAN mRNA 388307 388370 0.998697 + . ID=CGI_10026659; scaffold53 TRF Tandem_Repeat 388307 388370 58 + . . scaffold53 GLEAN mRNA 388443 388503 0.998697 + . ID=CGI_10026659; scaffold53 TRF Tandem_Repeat 388443 388503 50 + . . scaffold53 GLEAN mRNA 421949 422086 0.999973 + . ID=CGI_10026663; scaffold53 TRF Tandem_Repeat 421949 422086 129 + . . scaffold53 GLEAN mRNA 427725 427862 0.999973 + . ID=CGI_10026663; scaffold53 TRF Tandem_Repeat 427725 427862 129 + . . scaffold53 GLEAN mRNA 471918 471954 1 - . ID=CGI_10026665; scaffold53 TRF Tandem_Repeat 471918 471954 74 + . . scaffold53 GLEAN mRNA 545958 545988 0.567528 + . ID=CGI_10026671; scaffold53 TRF Tandem_Repeat 545958 545988 62 + . . scaffold53 GLEAN mRNA 547883 547993 0.567528 + . ID=CGI_10026671; scaffold53 WUBlastX LINE_L1-Tx1 547883 547993 49 - . . scaffold53 GLEAN mRNA 548164 548445 0.567528 + . ID=CGI_10026671; scaffold53 WUBlastX LINE_L1 548164 548445 72 - . . scaffold53 GLEAN mRNA 548185 548358 0.567528 + . ID=CGI_10026671; scaffold53 WUBlastX LINE_L1-Tx1 548185 548358 89 - . . scaffold53 GLEAN mRNA 547748 547969 0.567528 + . ID=CGI_10026671; scaffold53 WUBlastX LINE_L1-Tx1 547748 547969 27 - . . scaffold53 GLEAN mRNA 547998 548087 0.567528 + . ID=CGI_10026671; scaffold53 WUBlastX LINE_L1 547998 548087 38 - . . scaffold53 GLEAN mRNA 547805 547993 0.567528 + . ID=CGI_10026671; scaffold53 WUBlastX LINE_L1-Tx1 547805 547993 28 - . . scaffold53 GLEAN mRNA 579420 580415 0.567528 + . ID=CGI_10026671; scaffold53 TRF Tandem_Repeat 579420 580415 1019 + . . scaffold53 GLEAN mRNA 585211 585236 0.567528 + . ID=CGI_10026671; scaffold53 TRF Tandem_Repeat 585211 585236 52 + . . scaffold53 GLEAN mRNA 620703 620785 1 + . ID=CGI_10026674; scaffold53 TRF Tandem_Repeat 620703 620785 166 + . . scaffold53 GLEAN mRNA 639437 639496 0.341465 + . ID=CGI_10026676; scaffold53 TRF Tandem_Repeat 639437 639496 120 + . . scaffold53 GLEAN mRNA 649474 649521 0.999675 - . ID=CGI_10026678; scaffold53 TRF Tandem_Repeat 649474 649521 60 + . . scaffold53 GLEAN mRNA 655619 655788 0.999675 - . ID=CGI_10026678; scaffold53 TRF Tandem_Repeat 655619 655788 243 + . . scaffold53 GLEAN mRNA 656637 656868 0.999675 - . ID=CGI_10026678; scaffold53 TRF Tandem_Repeat 656637 656868 270 + . . scaffold53 GLEAN mRNA 696641 696687 1 + . ID=CGI_10026680; scaffold53 TRF Tandem_Repeat 696641 696687 94 + . . scaffold53 GLEAN mRNA 711028 711689 0.999415 - . ID=CGI_10026681; scaffold53 TRF Tandem_Repeat 711028 712159 1967 + . . scaffold53 GLEAN mRNA 724684 724733 1 - . ID=CGI_10026682; scaffold53 TRF Tandem_Repeat 724684 724733 82 + . . scaffold53 GLEAN mRNA 731430 731478 1 - . ID=CGI_10026682; scaffold53 TRF Tandem_Repeat 731430 731478 71 + . . scaffold53 GLEAN mRNA 725812 725994 1 - . ID=CGI_10026682; scaffold53 WUBlastX LINE_RTE-X 725812 725994 106 - . . scaffold53 GLEAN mRNA 743780 743814 1 + . ID=CGI_10026683; scaffold53 TRF Tandem_Repeat 743780 743814 70 + . . scaffold53 GLEAN mRNA 781086 781135 0.768032 + . ID=CGI_10026685; scaffold53 TRF Tandem_Repeat 781086 781135 100 + . . scaffold53 GLEAN mRNA 860900 860956 0.966732 - . ID=CGI_10026689; scaffold53 TRF Tandem_Repeat 860900 860956 114 + . . scaffold53 GLEAN mRNA 872702 872769 0.999942 - . ID=CGI_10026690; scaffold53 TRF Tandem_Repeat 872702 872769 118 + . . scaffold53 GLEAN mRNA 877412 877453 0.999942 - . ID=CGI_10026690; scaffold53 TRF Tandem_Repeat 877412 877453 84 + . . scaffold53 GLEAN mRNA 879010 879060 0.999942 - . ID=CGI_10026690; scaffold53 TRF Tandem_Repeat 879010 879060 102 + . . scaffold53 GLEAN mRNA 985872 986778 0.466135 - . ID=CGI_10026695; scaffold53 TRF Tandem_Repeat 985872 986778 1109 + . . scaffold53 GLEAN mRNA 988174 988215 0.466135 - . ID=CGI_10026695; scaffold53 TRF Tandem_Repeat 988174 988215 59 + . . scaffold53 GLEAN mRNA 1006240 1006277 0.466135 - . ID=CGI_10026695; scaffold53 TRF Tandem_Repeat 1006240 1006277 76 + . . scaffold53 GLEAN mRNA 1003789 1004352 0.466135 - . ID=CGI_10026695; scaffold53 WUBlastX DNA_TcMar-Fot1 1003789 1004352 365 + . . scaffold53 GLEAN mRNA 1004300 1005121 0.466135 - . ID=CGI_10026695; scaffold53 WUBlastX DNA_TcMar-Fot1 1004300 1005121 134 + . . scaffold53 GLEAN mRNA 1004333 1004989 0.466135 - . ID=CGI_10026695; scaffold53 WUBlastX DNA_TcMar-Fot1 1004333 1004989 449 + . . scaffold53 GLEAN mRNA 1094558 1094622 1 + . ID=CGI_10026698; scaffold53 TRF Tandem_Repeat 1094558 1094622 130 + . . scaffold53 GLEAN mRNA 1099611 1099648 1 + . ID=CGI_10026698; scaffold53 TRF Tandem_Repeat 1099611 1099648 76 + . . scaffold53 GLEAN mRNA 1100345 1100392 1 + . ID=CGI_10026698; scaffold53 TRF Tandem_Repeat 1100345 1100392 60 + . . scaffold53 GLEAN mRNA 1100345 1100389 1 + . ID=CGI_10026698; scaffold53 TRF Tandem_Repeat 1100345 1100389 81 + . . scaffold53 GLEAN mRNA 1103508 1103779 1 + . ID=CGI_10026698; scaffold53 TRF Tandem_Repeat 1103508 1103779 436 + . . scaffold53 GLEAN mRNA 1106184 1108489 1 + . ID=CGI_10026698; scaffold53 TRF Tandem_Repeat 1106184 1108489 2814 + . . scaffold53 GLEAN mRNA 1109119 1109245 1 + . ID=CGI_10026698; scaffold53 TRF Tandem_Repeat 1109119 1109245 254 + . . scaffold53 GLEAN mRNA 1125964 1128489 0.654333 + . ID=CGI_10026699; scaffold53 WUBlastX LINE_RTE-X 1125964 1128489 808 + . . scaffold53 GLEAN mRNA 1138179 1138203 0.654333 + . ID=CGI_10026699; scaffold53 TRF Tandem_Repeat 1138179 1138203 50 + . . scaffold53 GLEAN mRNA 1150071 1150073 0.999999 + . ID=CGI_10026701; scaffold53 TRF Tandem_Repeat 1150071 1150193 246 + . . scaffold53 GLEAN mRNA 1155517 1155648 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1155517 1155648 54 + . . scaffold53 GLEAN mRNA 1154744 1155301 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1154744 1155301 216 + . . scaffold53 GLEAN mRNA 1155538 1155711 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1155538 1155711 93 + . . scaffold53 GLEAN mRNA 1156241 1156813 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1156241 1156813 160 + . . scaffold53 GLEAN mRNA 1157473 1157916 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1157473 1157916 405 - . . scaffold53 GLEAN mRNA 1157925 1158461 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1157925 1158461 236 - . . scaffold53 GLEAN mRNA 1158658 1158930 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1158658 1158930 111 - . . scaffold53 GLEAN mRNA 1161171 1161596 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_Sola 1161171 1161596 230 - . . scaffold53 GLEAN mRNA 1161679 1161765 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_Sola 1161679 1161765 20 - . . scaffold53 GLEAN mRNA 1160613 1161602 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_Sola 1160613 1161602 182 - . . scaffold53 GLEAN mRNA 1160547 1160816 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_Sola 1160547 1160816 136 - . . scaffold53 GLEAN mRNA 1158589 1158738 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_Kolobok-IS4 1158589 1158738 32 - . . scaffold53 GLEAN mRNA 1161084 1161605 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_Sola 1161084 1161605 230 - . . scaffold53 GLEAN mRNA 1177611 1177637 1 + . ID=CGI_10026703; scaffold53 WUBlastX DNA_En-Spm 1177548 1177637 20 + . . scaffold301 GLEAN mRNA 61520 61550 0.999957 - . ID=CGI_10026708; scaffold301 TRF Tandem_Repeat 61520 61550 62 + . . scaffold301 GLEAN mRNA 97386 97443 0.75277 - . ID=CGI_10026709; scaffold301 TRF Tandem_Repeat 97386 97443 116 + . . scaffold301 GLEAN mRNA 254947 254995 0.438352 + . ID=CGI_10026712; scaffold301 TRF Tandem_Repeat 254947 254995 98 + . . scaffold301 GLEAN mRNA 255856 255967 0.438352 + . ID=CGI_10026712; scaffold301 TRF Tandem_Repeat 255856 255967 162 + . . scaffold301 GLEAN mRNA 259544 259575 0.438352 + . ID=CGI_10026712; scaffold301 TRF Tandem_Repeat 259544 259575 64 + . . scaffold301 GLEAN mRNA 260539 260582 0.438352 + . ID=CGI_10026712; scaffold301 TRF Tandem_Repeat 260539 260582 88 + . . scaffold301 GLEAN mRNA 342331 342356 0.999911 + . ID=CGI_10026716; scaffold301 TRF Tandem_Repeat 342331 342356 52 + . . scaffold301 GLEAN mRNA 344809 344850 0.9173 + . ID=CGI_10026717; scaffold301 TRF Tandem_Repeat 344809 344850 84 + . . scaffold301 GLEAN mRNA 376423 376448 0.998422 + . ID=CGI_10026719; scaffold301 TRF Tandem_Repeat 376423 376448 52 + . . scaffold301 GLEAN mRNA 388407 388475 0.811406 + . ID=CGI_10026720; scaffold301 TRF Tandem_Repeat 388407 388475 86 + . . scaffold301 GLEAN mRNA 394959 395792 0.811406 + . ID=CGI_10026720; scaffold301 WUBlastX LINE_RTE-X 394959 395792 170 - . . scaffold301 GLEAN mRNA 395957 397165 0.811406 + . ID=CGI_10026720; scaffold301 WUBlastX LINE_Jockey 395957 397165 71 - . . scaffold301 GLEAN mRNA 395780 396844 0.811406 + . ID=CGI_10026720; scaffold301 WUBlastX LINE_RTE-X 395780 396844 632 - . . scaffold301 GLEAN mRNA 417960 418008 0.911488 + . ID=CGI_10026721; scaffold301 TRF Tandem_Repeat 417960 418008 98 + . . scaffold301 GLEAN mRNA 419397 419443 0.911488 + . ID=CGI_10026721; scaffold301 TRF Tandem_Repeat 419397 419443 94 + . . scaffold301 GLEAN mRNA 425481 425532 0.911488 + . ID=CGI_10026721; scaffold301 TRF Tandem_Repeat 425481 425532 95 + . . scaffold301 GLEAN mRNA 427392 427423 0.911488 + . ID=CGI_10026721; scaffold301 TRF Tandem_Repeat 427392 427423 55 + . . scaffold301 GLEAN mRNA 515236 516081 0.999355 - . ID=CGI_10026723; scaffold301 WUBlastX DNA_TcMar-ISRm1 515236 516081 87 - . . scaffold301 GLEAN mRNA 515194 515430 0.999355 - . ID=CGI_10026723; scaffold301 WUBlastX DNA_TcMar-ISRm1 515194 515430 68 - . . scaffold301 GLEAN mRNA 557787 558662 0.999999 - . ID=CGI_10026724; scaffold301 WUBlastX LINE_RTE-X 557787 558992 536 - . . scaffold301 GLEAN mRNA 737561 737642 0.999069 - . ID=CGI_10026727; scaffold301 TRF Tandem_Repeat 737561 737642 92 + . . scaffold301 GLEAN mRNA 761288 761333 0.999676 - . ID=CGI_10026729; scaffold301 TRF Tandem_Repeat 761288 761333 74 + . . scaffold301 GLEAN mRNA 762599 762639 0.999676 - . ID=CGI_10026729; scaffold301 TRF Tandem_Repeat 762599 762639 82 + . . scaffold301 GLEAN mRNA 764350 764816 0.999676 - . ID=CGI_10026729; scaffold301 TRF Tandem_Repeat 764350 764816 637 + . . scaffold301 GLEAN mRNA 774340 774379 0.998638 - . ID=CGI_10026730; scaffold301 TRF Tandem_Repeat 774340 774379 80 + . . scaffold301 GLEAN mRNA 835845 836097 0.988961 - . ID=CGI_10026732; scaffold301 TRF Tandem_Repeat 835845 836097 316 + . . scaffold301 GLEAN mRNA 835547 835843 0.988961 - . ID=CGI_10026732; scaffold301 TRF Tandem_Repeat 835547 835843 462 + . . scaffold301 GLEAN mRNA 835547 836097 0.988961 - . ID=CGI_10026732; scaffold301 TRF Tandem_Repeat 835547 836097 726 + . . scaffold301 GLEAN mRNA 835547 836097 0.988961 - . ID=CGI_10026732; scaffold301 TRF Tandem_Repeat 835547 836097 683 + . . scaffold301 GLEAN mRNA 937252 937294 0.976661 - . ID=CGI_10026737; scaffold301 TRF Tandem_Repeat 937252 937294 86 + . . scaffold301 GLEAN mRNA 938143 938181 0.976661 - . ID=CGI_10026737; scaffold301 TRF Tandem_Repeat 938143 938181 78 + . . scaffold301 GLEAN mRNA 940049 940101 0.976661 - . ID=CGI_10026737; scaffold301 TRF Tandem_Repeat 940049 940101 61 + . . scaffold301 GLEAN mRNA 946779 947378 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 946779 947378 69 - . . scaffold301 GLEAN mRNA 946578 947273 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 946578 947273 199 - . . scaffold301 GLEAN mRNA 946686 947285 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 946686 947285 229 - . . scaffold301 GLEAN mRNA 956451 956660 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 956451 956660 59 - . . scaffold301 GLEAN mRNA 957526 957729 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 957526 957729 36 - . . scaffold301 GLEAN mRNA 950973 951137 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 950973 951137 27 - . . scaffold301 GLEAN mRNA 951253 951420 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 951253 951420 61 - . . scaffold301 GLEAN mRNA 951533 951730 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 951533 951730 127 - . . scaffold301 GLEAN mRNA 952012 953301 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 952012 953301 619 - . . scaffold301 GLEAN mRNA 951256 951522 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 951256 951522 23 - . . scaffold301 GLEAN mRNA 956466 956624 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 956466 956624 65 - . . scaffold301 GLEAN mRNA 951223 951426 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 951223 951426 36 - . . scaffold301 GLEAN mRNA 950913 951134 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX DNA_Sola 950913 951134 24 - . . scaffold301 GLEAN mRNA 1029505 1029624 1 - . ID=CGI_10026739; scaffold301 TRF Tandem_Repeat 1029505 1029624 168 + . . scaffold301 GLEAN mRNA 1032024 1032070 1 - . ID=CGI_10026739; scaffold301 TRF Tandem_Repeat 1032024 1032070 85 + . . scaffold301 GLEAN mRNA 1086542 1086867 1 - . ID=CGI_10026743; scaffold301 TRF Tandem_Repeat 1086542 1086867 512 + . . scaffold301 GLEAN mRNA 1126021 1126089 0.994279 - . ID=CGI_10026744; scaffold301 TRF Tandem_Repeat 1126021 1126089 129 + . . scaffold301 GLEAN mRNA 1141876 1142112 0.998748 - . ID=CGI_10026747; scaffold301 WUBlastX LTR_Gypsy 1141771 1142112 47 - . . scaffold301 GLEAN mRNA 1141876 1142112 0.998748 - . ID=CGI_10026747; scaffold301 WUBlastX LTR_Gypsy-Cigr 1141825 1142112 86 - . . scaffold301 GLEAN mRNA 1151695 1152015 0.650896 - . ID=CGI_10026748; scaffold301 TRF Tandem_Repeat 1151695 1152015 383 + . . scaffold301 GLEAN mRNA 1151696 1152022 0.650896 - . ID=CGI_10026748; scaffold301 TRF Tandem_Repeat 1151696 1152022 431 + . . scaffold301 GLEAN mRNA 1153137 1153303 0.650896 - . ID=CGI_10026748; scaffold301 TRF Tandem_Repeat 1153137 1153303 163 + . . scaffold301 GLEAN mRNA 1153133 1153321 0.650896 - . ID=CGI_10026748; scaffold301 TRF Tandem_Repeat 1153133 1153321 147 + . . scaffold301 GLEAN mRNA 1153137 1153378 0.650896 - . ID=CGI_10026748; scaffold301 TRF Tandem_Repeat 1153137 1153378 124 + . . scaffold301 GLEAN mRNA 1153391 1153820 0.650896 - . ID=CGI_10026748; scaffold301 TRF Tandem_Repeat 1153391 1153820 274 + . . scaffold301 GLEAN mRNA 1153391 1153820 0.650896 - . ID=CGI_10026748; scaffold301 TRF Tandem_Repeat 1153391 1153820 312 + . . scaffold301 GLEAN mRNA 1153391 1153672 0.650896 - . ID=CGI_10026748; scaffold301 TRF Tandem_Repeat 1153391 1153672 309 + . . scaffold301 GLEAN mRNA 1153697 1153813 0.650896 - . ID=CGI_10026748; scaffold301 TRF Tandem_Repeat 1153697 1153813 99 + . . scaffold301 GLEAN mRNA 1153422 1153792 0.650896 - . ID=CGI_10026748; scaffold301 TRF Tandem_Repeat 1153422 1153792 138 + . . scaffold301 GLEAN mRNA 1153917 1154090 0.650896 - . ID=CGI_10026748; scaffold301 TRF Tandem_Repeat 1153917 1154090 228 + . . scaffold301 GLEAN mRNA 1175972 1176016 0.999501 - . ID=CGI_10026750; scaffold301 TRF Tandem_Repeat 1175972 1176016 90 + . . scaffold301 GLEAN mRNA 1189205 1189340 0.776617 - . ID=CGI_10026751; scaffold301 TRF Tandem_Repeat 1189205 1189340 163 + . . scaffold301 GLEAN mRNA 1189588 1189666 0.776617 - . ID=CGI_10026751; scaffold301 TRF Tandem_Repeat 1189588 1189666 142 + . . scaffold301 GLEAN mRNA 1189753 1189784 0.776617 - . ID=CGI_10026751; scaffold301 TRF Tandem_Repeat 1189753 1189784 55 + . . scaffold301 GLEAN mRNA 1190527 1190608 0.776617 - . ID=CGI_10026751; scaffold301 TRF Tandem_Repeat 1190527 1190608 103 + . . scaffold142 GLEAN mRNA 45530 45621 0.497405 - . ID=CGI_10026754; scaffold142 TRF Tandem_Repeat 45530 45621 96 + . . scaffold142 GLEAN mRNA 45682 45856 0.497405 - . ID=CGI_10026754; scaffold142 TRF Tandem_Repeat 45682 45856 165 + . . scaffold142 GLEAN mRNA 45896 45992 0.497405 - . ID=CGI_10026754; scaffold142 TRF Tandem_Repeat 45896 45992 117 + . . scaffold142 GLEAN mRNA 46061 46161 0.497405 - . ID=CGI_10026754; scaffold142 TRF Tandem_Repeat 46061 46161 96 + . . scaffold142 GLEAN mRNA 157681 157685 0.986937 - . ID=CGI_10026755; scaffold142 WUBlastX LINE_CR1 157681 158349 220 - . . scaffold142 GLEAN mRNA 186181 186425 0.449794 - . ID=CGI_10026756; scaffold142 TRF Tandem_Repeat 186181 186425 118 + . . scaffold142 GLEAN mRNA 189276 189301 0.449794 - . ID=CGI_10026756; scaffold142 TRF Tandem_Repeat 189276 189301 52 + . . scaffold142 GLEAN mRNA 196473 196561 0.449794 - . ID=CGI_10026756; scaffold142 TRF Tandem_Repeat 196473 196561 108 + . . scaffold142 GLEAN mRNA 197467 197527 0.449794 - . ID=CGI_10026756; scaffold142 TRF Tandem_Repeat 197467 197527 122 + . . scaffold142 GLEAN mRNA 203098 203292 0.449794 - . ID=CGI_10026756; scaffold142 TRF Tandem_Repeat 203098 203292 173 + . . scaffold142 GLEAN mRNA 203098 203262 0.449794 - . ID=CGI_10026756; scaffold142 TRF Tandem_Repeat 203098 203262 178 + . . scaffold142 GLEAN mRNA 206220 206274 0.449794 - . ID=CGI_10026756; scaffold142 TRF Tandem_Repeat 206220 206274 110 + . . scaffold142 GLEAN mRNA 206272 206314 0.449794 - . ID=CGI_10026756; scaffold142 TRF Tandem_Repeat 206272 206314 86 + . . scaffold142 GLEAN mRNA 209101 209136 0.449794 - . ID=CGI_10026756; scaffold142 TRF Tandem_Repeat 209101 209136 54 + . . scaffold142 GLEAN mRNA 218511 219021 0.998793 - . ID=CGI_10026759; scaffold142 TRF Tandem_Repeat 218511 219021 336 + . . scaffold142 GLEAN mRNA 218505 218818 0.998793 - . ID=CGI_10026759; scaffold142 TRF Tandem_Repeat 218505 218818 499 + . . scaffold142 GLEAN mRNA 218790 218978 0.998793 - . ID=CGI_10026759; scaffold142 TRF Tandem_Repeat 218790 218978 199 + . . scaffold142 GLEAN mRNA 243045 243069 0.969071 + . ID=CGI_10026760; scaffold142 TRF Tandem_Repeat 243045 243069 50 + . . scaffold142 GLEAN mRNA 243207 244120 0.969071 + . ID=CGI_10026760; scaffold142 TRF Tandem_Repeat 243207 244120 943 + . . scaffold142 GLEAN mRNA 237398 238918 0.969071 + . ID=CGI_10026760; scaffold142 WUBlastX LINE_CR1 237398 238918 1294 + . . scaffold142 GLEAN mRNA 236693 237352 0.969071 + . ID=CGI_10026760; scaffold142 WUBlastX LINE_CR1 236693 237352 249 + . . scaffold142 GLEAN mRNA 237191 239224 0.969071 + . ID=CGI_10026760; scaffold142 WUBlastX LINE_I 237191 239224 241 + . . scaffold142 GLEAN mRNA 236795 238918 0.969071 + . ID=CGI_10026760; scaffold142 WUBlastX LINE_CR1 236795 238918 1260 + . . scaffold142 GLEAN mRNA 235848 236693 0.969071 + . ID=CGI_10026760; scaffold142 WUBlastX LINE_CR1 235848 236693 504 + . . scaffold142 GLEAN mRNA 377551 377604 0.649901 - . ID=CGI_10026761; scaffold142 TRF Tandem_Repeat 377551 377604 55 + . . scaffold142 GLEAN mRNA 480544 480571 0.544851 + . ID=CGI_10026764; scaffold142 TRF Tandem_Repeat 480544 480571 56 + . . scaffold142 GLEAN mRNA 497420 497471 0.544851 + . ID=CGI_10026764; scaffold142 TRF Tandem_Repeat 497420 497471 97 + . . scaffold142 GLEAN mRNA 570523 570649 0.998733 + . ID=CGI_10026766; scaffold142 TRF Tandem_Repeat 570523 570649 87 + . . scaffold142 GLEAN mRNA 570558 570666 0.998733 + . ID=CGI_10026766; scaffold142 TRF Tandem_Repeat 570558 570666 81 + . . scaffold142 GLEAN mRNA 570581 570666 0.998733 + . ID=CGI_10026766; scaffold142 TRF Tandem_Repeat 570581 570666 82 + . . scaffold142 GLEAN mRNA 571956 572001 0.998733 + . ID=CGI_10026766; scaffold142 TRF Tandem_Repeat 571956 572001 92 + . . scaffold142 GLEAN mRNA 580907 580946 0.998733 + . ID=CGI_10026766; scaffold142 TRF Tandem_Repeat 580907 580946 73 + . . scaffold142 GLEAN mRNA 590959 590997 0.726025 + . ID=CGI_10026767; scaffold142 TRF Tandem_Repeat 590959 590997 60 + . . scaffold142 GLEAN mRNA 591495 591555 0.726025 + . ID=CGI_10026767; scaffold142 TRF Tandem_Repeat 591495 591555 122 + . . scaffold142 GLEAN mRNA 656211 656968 0.927019 + . ID=CGI_10026768; scaffold142 TRF Tandem_Repeat 656211 656968 1026 + . . scaffold142 GLEAN mRNA 747293 747361 0.999676 + . ID=CGI_10026769; scaffold142 TRF Tandem_Repeat 747293 747361 138 + . . scaffold142 GLEAN mRNA 746524 746997 0.999676 + . ID=CGI_10026769; scaffold142 WUBlastX LINE_L2 746524 746997 26 + . . scaffold142 GLEAN mRNA 746806 746973 0.999676 + . ID=CGI_10026769; scaffold142 WUBlastX LINE_CR1-L2 746806 746973 39 + . . scaffold142 GLEAN mRNA 853184 853230 0.841403 + . ID=CGI_10026773; scaffold142 TRF Tandem_Repeat 853184 853230 94 + . . scaffold142 GLEAN mRNA 863091 863136 0.397218 + . ID=CGI_10026774; scaffold142 TRF Tandem_Repeat 863091 863136 92 + . . scaffold142 GLEAN mRNA 966329 966417 0.999623 - . ID=CGI_10026782; scaffold142 TRF Tandem_Repeat 966329 966417 126 + . . scaffold142 GLEAN mRNA 968200 968226 0.999623 - . ID=CGI_10026782; scaffold142 TRF Tandem_Repeat 968200 968226 54 + . . scaffold142 GLEAN mRNA 970131 970179 0.999623 - . ID=CGI_10026782; scaffold142 TRF Tandem_Repeat 970131 970179 98 + . . scaffold142 GLEAN mRNA 980422 982260 0.999623 - . ID=CGI_10026782; scaffold142 WUBlastX DNA_MuDR 980422 982260 439 + . . scaffold142 GLEAN mRNA 980749 982617 0.999623 - . ID=CGI_10026782; scaffold142 WUBlastX DNA_MuDR 980749 982617 440 + . . scaffold142 GLEAN mRNA 982754 983443 0.999623 - . ID=CGI_10026782; scaffold142 WUBlastX DNA_NOF? 982754 983443 118 + . . scaffold142 GLEAN mRNA 1002386 1002439 0.992639 + . ID=CGI_10026783; scaffold142 TRF Tandem_Repeat 1002386 1002439 50 + . . scaffold142 GLEAN mRNA 1016894 1016936 0.999675 - . ID=CGI_10026784; scaffold142 TRF Tandem_Repeat 1016894 1016936 58 + . . scaffold142 GLEAN mRNA 1039657 1039694 0.999675 - . ID=CGI_10026784; scaffold142 TRF Tandem_Repeat 1039657 1039694 76 + . . scaffold142 GLEAN mRNA 1051841 1051867 1 - . ID=CGI_10026785; scaffold142 TRF Tandem_Repeat 1051841 1051867 54 + . . scaffold142 GLEAN mRNA 1057167 1057203 1 - . ID=CGI_10026785; scaffold142 TRF Tandem_Repeat 1057167 1057203 65 + . . scaffold142 GLEAN mRNA 1065884 1065927 1 - . ID=CGI_10026785; scaffold142 TRF Tandem_Repeat 1065884 1065927 81 + . . scaffold142 GLEAN mRNA 1071486 1071515 1 - . ID=CGI_10026785; scaffold142 TRF Tandem_Repeat 1071486 1071515 60 + . . scaffold142 GLEAN mRNA 1075620 1075648 1 - . ID=CGI_10026785; scaffold142 TRF Tandem_Repeat 1075620 1075648 58 + . . scaffold142 GLEAN mRNA 1107443 1107469 0.999415 + . ID=CGI_10026787; scaffold142 TRF Tandem_Repeat 1107443 1107469 54 + . . scaffold142 GLEAN mRNA 1113018 1113364 0.999415 + . ID=CGI_10026787; scaffold142 TRF Tandem_Repeat 1113018 1113364 480 + . . scaffold142 GLEAN mRNA 1218970 1219668 0.999676 + . ID=CGI_10026797; scaffold142 WUBlastX DNA_Harbinger 1218970 1219668 33 - . . scaffold142 GLEAN mRNA 1219135 1220073 0.999676 + . ID=CGI_10026797; scaffold142 WUBlastX DNA_Harbinger 1219135 1220073 365 - . . scaffold142 GLEAN mRNA 1243595 1243867 0.889602 + . ID=CGI_10026798; scaffold142 WUBlastX DNA_MuDR 1243595 1243918 103 + . . scaffold142 GLEAN mRNA 1243870 1243918 0.974028 + . ID=CGI_10026799; scaffold142 WUBlastX DNA_MuDR 1243595 1243918 103 + . . scaffold601 GLEAN mRNA 23742 23986 0.78898 - . ID=CGI_10026801; scaffold601 TRF Tandem_Repeat 23742 23986 259 + . . scaffold601 GLEAN mRNA 129466 129532 1 - . ID=CGI_10026806; scaffold601 TRF Tandem_Repeat 129466 129532 91 + . . scaffold601 GLEAN mRNA 129568 129619 1 - . ID=CGI_10026806; scaffold601 TRF Tandem_Repeat 129568 129619 95 + . . scaffold601 GLEAN mRNA 182117 182402 0.999648 - . ID=CGI_10026810; scaffold601 TRF Tandem_Repeat 182117 182402 446 + . . scaffold601 GLEAN mRNA 231836 232925 0.999619 - . ID=CGI_10026812; scaffold601 TRF Tandem_Repeat 231836 232925 419 + . . scaffold601 GLEAN mRNA 231836 232998 0.999619 - . ID=CGI_10026812; scaffold601 TRF Tandem_Repeat 231836 232998 648 + . . scaffold601 GLEAN mRNA 231847 232967 0.999619 - . ID=CGI_10026812; scaffold601 TRF Tandem_Repeat 231847 232967 582 + . . scaffold601 GLEAN mRNA 234634 235095 0.999619 - . ID=CGI_10026812; scaffold601 TRF Tandem_Repeat 234634 235095 609 + . . scaffold601 GLEAN mRNA 281188 281307 0.593771 - . ID=CGI_10026818; scaffold601 TRF Tandem_Repeat 281188 281307 231 + . . scaffold601 GLEAN mRNA 301749 301809 0.999414 + . ID=CGI_10026821; scaffold601 TRF Tandem_Repeat 301749 301809 122 + . . scaffold601 GLEAN mRNA 312977 313327 0.999414 + . ID=CGI_10026821; scaffold601 TRF Tandem_Repeat 312977 313327 431 + . . scaffold601 GLEAN mRNA 316605 316775 0.999414 + . ID=CGI_10026821; scaffold601 TRF Tandem_Repeat 316605 316775 288 + . . scaffold601 GLEAN mRNA 319250 319684 0.999414 + . ID=CGI_10026821; scaffold601 TRF Tandem_Repeat 319250 319684 490 + . . scaffold601 GLEAN mRNA 322502 322648 0.999414 + . ID=CGI_10026821; scaffold601 TRF Tandem_Repeat 322502 322648 204 + . . scaffold601 GLEAN mRNA 322670 323360 0.999414 + . ID=CGI_10026821; scaffold601 TRF Tandem_Repeat 322670 323360 1301 + . . scaffold601 GLEAN mRNA 324256 324347 0.999414 + . ID=CGI_10026821; scaffold601 TRF Tandem_Repeat 324256 324347 89 + . . scaffold601 GLEAN mRNA 327007 327043 0.999414 + . ID=CGI_10026821; scaffold601 TRF Tandem_Repeat 327007 327043 74 + . . scaffold601 GLEAN mRNA 332422 332913 0.999414 + . ID=CGI_10026821; scaffold601 TRF Tandem_Repeat 332422 332913 867 + . . scaffold601 GLEAN mRNA 372152 372191 0.543194 + . ID=CGI_10026822; scaffold601 TRF Tandem_Repeat 372152 372191 55 + . . scaffold601 GLEAN mRNA 374497 374562 0.543194 + . ID=CGI_10026822; scaffold601 WUBlastX LINE_L2 374497 374562 20 + . . scaffold601 GLEAN mRNA 377228 378025 0.543194 + . ID=CGI_10026822; scaffold601 WUBlastX LINE_L1-Tx1 377228 378025 191 + . . scaffold601 GLEAN mRNA 374856 377222 0.543194 + . ID=CGI_10026822; scaffold601 WUBlastX LINE_L1-Tx1 374856 377222 1398 + . . scaffold601 GLEAN mRNA 463601 465832 1 + . ID=CGI_10026828; scaffold601 TRF Tandem_Repeat 463601 465832 3126 + . . scaffold601 GLEAN mRNA 463601 465832 1 + . ID=CGI_10026828; scaffold601 TRF Tandem_Repeat 463601 465832 3258 + . . scaffold601 GLEAN mRNA 463601 465832 1 + . ID=CGI_10026828; scaffold601 TRF Tandem_Repeat 463601 465832 3345 + . . scaffold601 GLEAN mRNA 469578 470433 1 + . ID=CGI_10026828; scaffold601 TRF Tandem_Repeat 469578 470433 920 + . . scaffold601 GLEAN mRNA 486564 486603 0.678522 + . ID=CGI_10026830; scaffold601 TRF Tandem_Repeat 486564 486603 73 + . . scaffold601 GLEAN mRNA 488980 489462 0.678522 + . ID=CGI_10026830; scaffold601 WUBlastX DNA_IS4EU 488980 489462 70 + . . scaffold601 GLEAN mRNA 489268 489465 0.678522 + . ID=CGI_10026830; scaffold601 WUBlastX DNA_IS4EU 489268 489465 99 + . . scaffold601 GLEAN mRNA 494051 494140 1 + . ID=CGI_10026831; scaffold601 TRF Tandem_Repeat 494051 494140 162 + . . scaffold601 GLEAN mRNA 501717 501937 1 - . ID=CGI_10026832; scaffold601 TRF Tandem_Repeat 501717 501937 164 + . . scaffold601 GLEAN mRNA 501936 502127 1 - . ID=CGI_10026832; scaffold601 TRF Tandem_Repeat 501936 502127 186 + . . scaffold601 GLEAN mRNA 505318 505818 1 - . ID=CGI_10026832; scaffold601 TRF Tandem_Repeat 505318 505818 407 + . . scaffold601 GLEAN mRNA 505318 505818 1 - . ID=CGI_10026832; scaffold601 TRF Tandem_Repeat 505318 505818 450 + . . scaffold601 GLEAN mRNA 537553 537597 0.998649 + . ID=CGI_10026835; scaffold601 TRF Tandem_Repeat 537553 537597 90 + . . scaffold601 GLEAN mRNA 581636 581824 1 - . ID=CGI_10026837; scaffold601 WUBlastX LTR_Ngaro 581636 581824 35 + . . scaffold601 GLEAN mRNA 581579 581770 1 - . ID=CGI_10026837; scaffold601 WUBlastX LTR_Ngaro 581579 581770 82 + . . scaffold601 GLEAN mRNA 581346 581714 1 - . ID=CGI_10026837; scaffold601 WUBlastX LTR_Ngaro 581346 581714 23 + . . scaffold601 GLEAN mRNA 599508 600170 0.912594 - . ID=CGI_10026838; scaffold601 TRF Tandem_Repeat 599508 600170 956 + . . scaffold601 GLEAN mRNA 600181 600215 0.912594 - . ID=CGI_10026838; scaffold601 TRF Tandem_Repeat 600181 600215 52 + . . scaffold601 GLEAN mRNA 600177 600211 0.912594 - . ID=CGI_10026838; scaffold601 TRF Tandem_Repeat 600177 600211 61 + . . scaffold601 GLEAN mRNA 600548 602230 0.912594 - . ID=CGI_10026838; scaffold601 WUBlastX LINE_RTE-BovB 600548 602230 1551 + . . scaffold601 GLEAN mRNA 600386 601423 0.912594 - . ID=CGI_10026838; scaffold601 WUBlastX LINE_CR1 600386 601423 181 + . . scaffold601 GLEAN mRNA 602502 602576 0.912594 - . ID=CGI_10026838; scaffold601 WUBlastX LINE_CR1 602502 602576 22 + . . scaffold601 GLEAN mRNA 648935 648966 0.543325 + . ID=CGI_10026840; scaffold601 TRF Tandem_Repeat 648935 648966 64 + . . scaffold601 GLEAN mRNA 648966 649007 0.543325 + . ID=CGI_10026840; scaffold601 TRF Tandem_Repeat 648966 649007 84 + . . scaffold601 GLEAN mRNA 666237 666290 0.802743 - . ID=CGI_10026841; scaffold601 TRF Tandem_Repeat 666237 666290 72 + . . scaffold601 GLEAN mRNA 825986 829876 0.512568 + . ID=CGI_10026849; scaffold601 TRF Tandem_Repeat 825986 829876 3894 + . . scaffold601 GLEAN mRNA 834064 834629 0.512568 + . ID=CGI_10026849; scaffold601 WUBlastX LINE_RTE-X 834064 834705 47 + . . scaffold601 GLEAN mRNA 834319 834629 0.512568 + . ID=CGI_10026849; scaffold601 WUBlastX LINE_RTE-X 834319 834705 77 + . . scaffold601 GLEAN mRNA 834209 834331 0.512568 + . ID=CGI_10026849; scaffold601 WUBlastX LINE_RTE-X 834209 834331 67 + . . scaffold601 GLEAN mRNA 833987 834397 0.512568 + . ID=CGI_10026849; scaffold601 WUBlastX LINE_RTE-X 833987 834397 23 + . . scaffold601 GLEAN mRNA 851183 851398 1 + . ID=CGI_10026850; scaffold601 WUBlastX DNA_IS4EU 851183 851494 36 + . . scaffold601 GLEAN mRNA 851189 851383 1 + . ID=CGI_10026850; scaffold601 WUBlastX DNA_IS4EU 851189 851383 76 + . . scaffold601 GLEAN mRNA 889997 890672 0.651123 - . ID=CGI_10026852; scaffold601 TRF Tandem_Repeat 889997 890672 911 + . . scaffold601 GLEAN mRNA 898244 899164 0.651123 - . ID=CGI_10026852; scaffold601 TRF Tandem_Repeat 898244 899164 1283 + . . scaffold601 GLEAN mRNA 899369 899406 0.651123 - . ID=CGI_10026852; scaffold601 TRF Tandem_Repeat 899369 899406 58 + . . scaffold601 GLEAN mRNA 901227 901279 0.651123 - . ID=CGI_10026852; scaffold601 TRF Tandem_Repeat 901227 901279 106 + . . scaffold601 GLEAN mRNA 902795 902820 0.651123 - . ID=CGI_10026852; scaffold601 TRF Tandem_Repeat 902795 902820 52 + . . scaffold601 GLEAN mRNA 910852 910890 0.651123 - . ID=CGI_10026852; scaffold601 TRF Tandem_Repeat 910852 910890 78 + . . scaffold601 GLEAN mRNA 918062 918107 0.651123 - . ID=CGI_10026852; scaffold601 TRF Tandem_Repeat 918062 918107 56 + . . scaffold601 GLEAN mRNA 918069 918120 0.651123 - . ID=CGI_10026852; scaffold601 TRF Tandem_Repeat 918069 918120 59 + . . scaffold601 GLEAN mRNA 917079 918038 0.651123 - . ID=CGI_10026852; scaffold601 TRF Tandem_Repeat 917079 918038 1451 + . . scaffold601 GLEAN mRNA 1011331 1011355 0.999675 + . ID=CGI_10026854; scaffold601 TRF Tandem_Repeat 1011331 1011355 50 + . . scaffold601 GLEAN mRNA 1012398 1012482 0.999675 + . ID=CGI_10026854; scaffold601 TRF Tandem_Repeat 1012398 1012482 143 + . . scaffold601 GLEAN mRNA 1055636 1055704 0.821345 + . ID=CGI_10026856; scaffold601 TRF Tandem_Repeat 1055636 1055704 113 + . . scaffold601 GLEAN mRNA 1100045 1100165 0.780387 + . ID=CGI_10026858; scaffold601 TRF Tandem_Repeat 1100045 1100165 111 + . . scaffold601 GLEAN mRNA 1101008 1101113 0.780387 + . ID=CGI_10026858; scaffold601 TRF Tandem_Repeat 1101008 1101113 131 + . . scaffold601 GLEAN mRNA 1101017 1101113 0.780387 + . ID=CGI_10026858; scaffold601 TRF Tandem_Repeat 1101017 1101113 185 + . . scaffold601 GLEAN mRNA 1107819 1108386 0.780387 + . ID=CGI_10026858; scaffold601 TRF Tandem_Repeat 1107819 1108386 1100 + . . scaffold601 GLEAN mRNA 1108702 1109516 0.780387 + . ID=CGI_10026858; scaffold601 TRF Tandem_Repeat 1108702 1109516 1477 + . . scaffold601 GLEAN mRNA 1147584 1147721 0.999451 - . ID=CGI_10026859; scaffold601 WUBlastX LTR_Gypsy 1147584 1148009 48 - . . scaffold601 GLEAN mRNA 1147683 1147721 0.999451 - . ID=CGI_10026859; scaffold601 WUBlastX LTR_Gypsy 1147683 1147958 71 - . . scaffold601 GLEAN mRNA 1203343 1203447 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1203343 1203447 101 + . . scaffold601 GLEAN mRNA 1203335 1203685 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1203335 1203685 366 + . . scaffold601 GLEAN mRNA 1203480 1203609 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1203480 1203609 103 + . . scaffold601 GLEAN mRNA 1203610 1203758 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1203610 1203758 95 + . . scaffold601 GLEAN mRNA 1204873 1204953 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1204873 1204953 63 + . . scaffold601 GLEAN mRNA 1209493 1209579 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1209493 1209579 111 + . . scaffold601 GLEAN mRNA 1209571 1210274 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1209571 1210274 261 + . . scaffold601 GLEAN mRNA 1209610 1209920 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1209610 1209920 278 + . . scaffold601 GLEAN mRNA 1209673 1211601 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1209673 1211601 408 + . . scaffold601 GLEAN mRNA 1209924 1211702 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1209924 1211702 1359 + . . scaffold601 GLEAN mRNA 1211944 1212066 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1211944 1212066 60 + . . scaffold601 GLEAN mRNA 1201024 1201034 0.805376 - . ID=CGI_10026861; scaffold601 WUBlastX LINE_L2 1200789 1201034 47 + . . scaffold601 GLEAN mRNA 1212670 1212752 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1212670 1212752 67 + . . scaffold601 GLEAN mRNA 1218358 1218608 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1218358 1218608 461 + . . scaffold601 GLEAN mRNA 1222014 1222271 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1222014 1222271 462 + . . scaffold601 GLEAN mRNA 1222250 1222338 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1222250 1222338 178 + . . scaffold601 GLEAN mRNA 1222968 1223407 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1222968 1223407 745 + . . scaffold601 GLEAN mRNA 1224500 1225173 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1224500 1225173 444 + . . scaffold601 GLEAN mRNA 1224495 1225040 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1224495 1225040 580 + . . scaffold601 GLEAN mRNA 1226297 1226531 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1226297 1226531 344 + . . scaffold601 GLEAN mRNA 1211986 1212572 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1211986 1212572 274 + . . scaffold601 GLEAN mRNA 1212133 1212549 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1212133 1212549 536 + . . scaffold601 GLEAN mRNA 1234727 1234781 1 - . ID=CGI_10026862; scaffold601 TRF Tandem_Repeat 1234727 1234781 101 + . . scaffold601 GLEAN mRNA 1229484 1229582 1 - . ID=CGI_10026862; scaffold601 WUBlastX LINE_L2 1229484 1229582 22 + . . scaffold601 GLEAN mRNA 1229529 1232717 1 - . ID=CGI_10026862; scaffold601 WUBlastX LINE_L2 1229529 1232717 1742 + . . scaffold601 GLEAN mRNA 1243593 1243634 0.989195 + . ID=CGI_10026863; scaffold601 TRF Tandem_Repeat 1243593 1243634 84 + . . scaffold601 GLEAN mRNA 1243693 1243724 0.989195 + . ID=CGI_10026863; scaffold601 TRF Tandem_Repeat 1243693 1243724 64 + . . scaffold601 GLEAN mRNA 1254301 1255206 1 - . ID=CGI_10026864; scaffold601 TRF Tandem_Repeat 1254301 1255206 1740 + . . scaffold601 GLEAN mRNA 1257496 1257712 1 - . ID=CGI_10026864; scaffold601 TRF Tandem_Repeat 1257496 1257712 251 + . . scaffold393 GLEAN mRNA 23370 23485 1 + . ID=CGI_10026867; scaffold393 TRF Tandem_Repeat 23370 23485 223 + . . scaffold393 GLEAN mRNA 270893 271974 0.999676 + . ID=CGI_10026874; scaffold393 TRF Tandem_Repeat 270893 271974 1522 + . . scaffold393 GLEAN mRNA 304297 304393 0.99935 + . ID=CGI_10026876; scaffold393 TRF Tandem_Repeat 304297 304393 185 + . . scaffold393 GLEAN mRNA 357018 357202 0.976322 + . ID=CGI_10026879; scaffold393 TRF Tandem_Repeat 357018 357202 244 + . . scaffold393 GLEAN mRNA 357018 357581 0.976322 + . ID=CGI_10026879; scaffold393 TRF Tandem_Repeat 357018 357581 365 + . . scaffold393 GLEAN mRNA 357285 357581 0.976322 + . ID=CGI_10026879; scaffold393 TRF Tandem_Repeat 357285 357581 265 + . . scaffold393 GLEAN mRNA 349284 349622 0.976322 + . ID=CGI_10026879; scaffold393 WUBlastX DNA_TcMar-Tc1 349284 349622 53 + . . scaffold393 GLEAN mRNA 351162 351500 0.976322 + . ID=CGI_10026879; scaffold393 WUBlastX DNA_TcMar-Tc1 351162 351500 53 + . . scaffold393 GLEAN mRNA 349395 349613 0.976322 + . ID=CGI_10026879; scaffold393 WUBlastX DNA_TcMar-Tc1 349395 349613 83 + . . scaffold393 GLEAN mRNA 351273 351491 0.976322 + . ID=CGI_10026879; scaffold393 WUBlastX DNA_TcMar-Tc1 351273 351491 83 + . . scaffold393 GLEAN mRNA 349329 349607 0.976322 + . ID=CGI_10026879; scaffold393 WUBlastX DNA_TcMar-Tc1 349329 349607 72 + . . scaffold393 GLEAN mRNA 351207 351485 0.976322 + . ID=CGI_10026879; scaffold393 WUBlastX DNA_TcMar-Tc1 351207 351485 72 + . . scaffold393 GLEAN mRNA 417216 417674 0.996819 - . ID=CGI_10026888; scaffold393 TRF Tandem_Repeat 417216 417674 638 + . . scaffold393 GLEAN mRNA 421428 422334 0.970688 + . ID=CGI_10026889; scaffold393 TRF Tandem_Repeat 421428 422334 1331 + . . scaffold393 GLEAN mRNA 441515 441985 0.997307 - . ID=CGI_10026892; scaffold393 TRF Tandem_Repeat 441515 441985 754 + . . scaffold393 GLEAN mRNA 441515 441985 0.997307 - . ID=CGI_10026892; scaffold393 TRF Tandem_Repeat 441515 441985 749 + . . scaffold393 GLEAN mRNA 441515 441985 0.997307 - . ID=CGI_10026892; scaffold393 TRF Tandem_Repeat 441515 441985 795 + . . scaffold393 GLEAN mRNA 441579 441982 0.997307 - . ID=CGI_10026892; scaffold393 TRF Tandem_Repeat 441579 441982 110 + . . scaffold393 GLEAN mRNA 442523 442644 0.997307 - . ID=CGI_10026892; scaffold393 TRF Tandem_Repeat 442523 442644 139 + . . scaffold393 GLEAN mRNA 442523 442647 0.997307 - . ID=CGI_10026892; scaffold393 TRF Tandem_Repeat 442523 442647 159 + . . scaffold393 GLEAN mRNA 445308 445377 0.997307 - . ID=CGI_10026892; scaffold393 TRF Tandem_Repeat 445308 445377 122 + . . scaffold393 GLEAN mRNA 445401 446360 0.997307 - . ID=CGI_10026892; scaffold393 TRF Tandem_Repeat 445401 446360 1363 + . . scaffold393 GLEAN mRNA 449430 449532 0.997307 - . ID=CGI_10026892; scaffold393 TRF Tandem_Repeat 449430 449532 143 + . . scaffold393 GLEAN mRNA 449593 449822 0.997307 - . ID=CGI_10026892; scaffold393 TRF Tandem_Repeat 449593 449822 270 + . . scaffold393 GLEAN mRNA 449593 449822 0.997307 - . ID=CGI_10026892; scaffold393 TRF Tandem_Repeat 449593 449822 325 + . . scaffold393 GLEAN mRNA 452339 452527 0.997307 - . ID=CGI_10026892; scaffold393 TRF Tandem_Repeat 452339 452527 369 + . . scaffold393 GLEAN mRNA 462810 462870 0.99873 + . ID=CGI_10026893; scaffold393 TRF Tandem_Repeat 462810 462870 104 + . . scaffold393 GLEAN mRNA 467774 467961 0.99873 + . ID=CGI_10026893; scaffold393 TRF Tandem_Repeat 467774 467961 103 + . . scaffold393 GLEAN mRNA 474516 475569 1 + . ID=CGI_10026894; scaffold393 TRF Tandem_Repeat 474516 475569 1268 + . . scaffold393 GLEAN mRNA 474516 475569 1 + . ID=CGI_10026894; scaffold393 TRF Tandem_Repeat 474516 475569 1297 + . . scaffold393 GLEAN mRNA 494281 494327 1 - . ID=CGI_10026895; scaffold393 TRF Tandem_Repeat 494281 494327 69 + . . scaffold393 GLEAN mRNA 504472 504655 0.680323 + . ID=CGI_10026896; scaffold393 TRF Tandem_Repeat 504472 504655 89 + . . scaffold393 GLEAN mRNA 548752 548792 0.995819 + . ID=CGI_10026901; scaffold393 TRF Tandem_Repeat 548752 548792 73 + . . scaffold393 GLEAN mRNA 555116 555639 0.995819 + . ID=CGI_10026901; scaffold393 TRF Tandem_Repeat 555116 555639 785 + . . scaffold393 GLEAN mRNA 556932 556989 0.995819 + . ID=CGI_10026901; scaffold393 TRF Tandem_Repeat 556932 556989 107 + . . scaffold393 GLEAN mRNA 558901 558961 0.995819 + . ID=CGI_10026901; scaffold393 TRF Tandem_Repeat 558901 558961 79 + . . scaffold393 GLEAN mRNA 562737 562977 0.995819 + . ID=CGI_10026901; scaffold393 TRF Tandem_Repeat 562737 562977 376 + . . scaffold393 GLEAN mRNA 576642 576697 1 - . ID=CGI_10026903; scaffold393 TRF Tandem_Repeat 576642 576697 112 + . . scaffold393 GLEAN mRNA 618191 618217 0.719328 + . ID=CGI_10026908; scaffold393 TRF Tandem_Repeat 618191 618217 54 + . . scaffold393 GLEAN mRNA 684353 684402 0.987325 + . ID=CGI_10026910; scaffold393 TRF Tandem_Repeat 684353 684402 55 + . . scaffold393 GLEAN mRNA 685905 686182 0.987325 + . ID=CGI_10026910; scaffold393 TRF Tandem_Repeat 685905 686182 439 + . . scaffold393 GLEAN mRNA 721711 721944 0.68143 + . ID=CGI_10026911; scaffold393 WUBlastX LINE_RTE-X 721711 721944 50 - . . scaffold393 GLEAN mRNA 721753 722076 0.68143 + . ID=CGI_10026911; scaffold393 WUBlastX LINE_RTE-X 721753 722076 27 - . . scaffold393 GLEAN mRNA 902567 902600 0.999949 + . ID=CGI_10026916; scaffold393 TRF Tandem_Repeat 902567 902600 59 + . . scaffold393 GLEAN mRNA 919545 919582 0.500169 + . ID=CGI_10026917; scaffold393 TRF Tandem_Repeat 919545 919582 58 + . . scaffold393 GLEAN mRNA 929487 929527 0.500169 + . ID=CGI_10026917; scaffold393 TRF Tandem_Repeat 929487 929527 82 + . . scaffold393 GLEAN mRNA 930742 930917 0.500169 + . ID=CGI_10026917; scaffold393 TRF Tandem_Repeat 930742 930917 127 + . . scaffold393 GLEAN mRNA 1012581 1012786 0.999766 - . ID=CGI_10026918; scaffold393 TRF Tandem_Repeat 1012581 1012786 267 + . . scaffold393 GLEAN mRNA 1012602 1012786 0.999766 - . ID=CGI_10026918; scaffold393 TRF Tandem_Repeat 1012602 1012786 311 + . . scaffold393 GLEAN mRNA 1030008 1030550 0.477986 - . ID=CGI_10026919; scaffold393 TRF Tandem_Repeat 1030008 1030550 951 + . . scaffold393 GLEAN mRNA 1041469 1041978 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-X 1041469 1041978 193 - . . scaffold393 GLEAN mRNA 1040170 1040412 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-X 1040170 1040412 85 - . . scaffold393 GLEAN mRNA 1041466 1041843 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-X 1041466 1041843 223 - . . scaffold393 GLEAN mRNA 1043376 1043525 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-X 1043376 1043525 33 - . . scaffold393 GLEAN mRNA 1042826 1042972 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-X 1042826 1042972 36 - . . scaffold393 GLEAN mRNA 1041837 1042193 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-X 1041837 1042193 33 - . . scaffold393 GLEAN mRNA 1041935 1042108 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_L1-Tx1 1041935 1042108 46 - . . scaffold393 GLEAN mRNA 1043343 1043510 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-X 1043343 1043510 31 - . . scaffold393 GLEAN mRNA 1042716 1042775 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_Rex-Babar 1042716 1042775 20 - . . scaffold393 GLEAN mRNA 1043385 1043633 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_CR1 1043385 1043633 21 - . . scaffold393 GLEAN mRNA 1043023 1043235 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-X 1043023 1043235 64 - . . scaffold393 GLEAN mRNA 1041941 1042048 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_L1-Tx1 1041941 1042048 48 - . . scaffold393 GLEAN mRNA 1043409 1043513 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-X 1043409 1043513 35 - . . scaffold393 GLEAN mRNA 1040227 1040445 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-X 1040227 1040445 98 - . . scaffold393 GLEAN mRNA 1040444 1041454 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-X 1040444 1041454 276 - . . scaffold393 GLEAN mRNA 1042835 1042951 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-X 1042835 1042951 66 - . . scaffold393 GLEAN mRNA 1043487 1043588 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX LINE_RTE-BovB 1043487 1043588 24 - . . scaffold393 GLEAN mRNA 1052448 1052496 0.477986 - . ID=CGI_10026919; scaffold393 TRF Tandem_Repeat 1052448 1052496 89 + . . scaffold393 GLEAN mRNA 1056750 1057616 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX DNA_Harbinger 1056750 1057616 187 - . . scaffold393 GLEAN mRNA 1056903 1057622 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX DNA_Harbinger 1056903 1057622 278 - . . scaffold393 GLEAN mRNA 1057589 1057765 0.477986 - . ID=CGI_10026919; scaffold393 WUBlastX DNA_Harbinger 1057589 1057765 71 - . . scaffold393 GLEAN mRNA 1066016 1068312 0.999605 + . ID=CGI_10026920; scaffold393 TRF Tandem_Repeat 1066016 1068312 818 + . . scaffold393 GLEAN mRNA 1069223 1069399 0.999605 + . ID=CGI_10026920; scaffold393 WUBlastX LTR_Gypsy 1069223 1069399 27 + . . scaffold393 GLEAN mRNA 1115689 1115739 0.998691 - . ID=CGI_10026925; scaffold393 TRF Tandem_Repeat 1115689 1115739 102 + . . scaffold393 GLEAN mRNA 1165243 1165475 0.999656 + . ID=CGI_10026928; scaffold393 TRF Tandem_Repeat 1165243 1165475 161 + . . scaffold393 GLEAN mRNA 1166092 1166185 0.999656 + . ID=CGI_10026928; scaffold393 TRF Tandem_Repeat 1166092 1166185 125 + . . scaffold393 GLEAN mRNA 1166232 1166320 0.999656 + . ID=CGI_10026928; scaffold393 TRF Tandem_Repeat 1166232 1166320 128 + . . scaffold393 GLEAN mRNA 1193436 1193478 0.588681 - . ID=CGI_10026931; scaffold393 TRF Tandem_Repeat 1193436 1193478 52 + . . scaffold393 GLEAN mRNA 1191618 1191890 0.588681 - . ID=CGI_10026931; scaffold393 WUBlastX DNA_hAT-Blackja 1191618 1191890 71 + . . scaffold211 GLEAN mRNA 21141 21213 0.430892 + . ID=CGI_10026932; scaffold211 TRF Tandem_Repeat 21141 21213 146 + . . scaffold211 GLEAN mRNA 66356 66407 0.675585 + . ID=CGI_10026933; scaffold211 TRF Tandem_Repeat 66356 66407 104 + . . scaffold211 GLEAN mRNA 177250 177538 0.937536 - . ID=CGI_10026936; scaffold211 TRF Tandem_Repeat 177250 177538 375 + . . scaffold211 GLEAN mRNA 185574 185660 0.937536 - . ID=CGI_10026936; scaffold211 TRF Tandem_Repeat 185574 185660 156 + . . scaffold211 GLEAN mRNA 194473 194499 0.937536 - . ID=CGI_10026936; scaffold211 TRF Tandem_Repeat 194473 194499 54 + . . scaffold211 GLEAN mRNA 206213 206252 0.937536 - . ID=CGI_10026936; scaffold211 TRF Tandem_Repeat 206213 206252 80 + . . scaffold211 GLEAN mRNA 259705 259768 0.325461 - . ID=CGI_10026938; scaffold211 TRF Tandem_Repeat 259705 259768 53 + . . scaffold211 GLEAN mRNA 262350 262389 0.325461 - . ID=CGI_10026938; scaffold211 TRF Tandem_Repeat 262350 262389 80 + . . scaffold211 GLEAN mRNA 264422 265141 0.325461 - . ID=CGI_10026938; scaffold211 TRF Tandem_Repeat 264422 265141 531 + . . scaffold211 GLEAN mRNA 264422 265141 0.325461 - . ID=CGI_10026938; scaffold211 TRF Tandem_Repeat 264422 265141 603 + . . scaffold211 GLEAN mRNA 265874 266002 0.325461 - . ID=CGI_10026938; scaffold211 TRF Tandem_Repeat 265874 266002 249 + . . scaffold211 GLEAN mRNA 268728 268763 0.325461 - . ID=CGI_10026938; scaffold211 TRF Tandem_Repeat 268728 268763 72 + . . scaffold211 GLEAN mRNA 271366 271403 0.325461 - . ID=CGI_10026938; scaffold211 TRF Tandem_Repeat 271366 271403 76 + . . scaffold211 GLEAN mRNA 273474 273899 0.325461 - . ID=CGI_10026938; scaffold211 TRF Tandem_Repeat 273474 273899 556 + . . scaffold211 GLEAN mRNA 273474 273899 0.325461 - . ID=CGI_10026938; scaffold211 TRF Tandem_Repeat 273474 273899 558 + . . scaffold211 GLEAN mRNA 273474 273800 0.325461 - . ID=CGI_10026938; scaffold211 TRF Tandem_Repeat 273474 273800 530 + . . scaffold211 GLEAN mRNA 271366 271403 0.99133 + . ID=CGI_10026939; scaffold211 TRF Tandem_Repeat 271366 271403 76 + . . scaffold211 GLEAN mRNA 273474 273899 0.99133 + . ID=CGI_10026939; scaffold211 TRF Tandem_Repeat 273474 273899 556 + . . scaffold211 GLEAN mRNA 273474 273899 0.99133 + . ID=CGI_10026939; scaffold211 TRF Tandem_Repeat 273474 273899 558 + . . scaffold211 GLEAN mRNA 273474 273800 0.99133 + . ID=CGI_10026939; scaffold211 TRF Tandem_Repeat 273474 273800 530 + . . scaffold211 GLEAN mRNA 425652 425927 0.361408 + . ID=CGI_10026946; scaffold211 TRF Tandem_Repeat 425652 425927 277 + . . scaffold211 GLEAN mRNA 426631 427259 0.361408 + . ID=CGI_10026946; scaffold211 TRF Tandem_Repeat 426631 427259 907 + . . scaffold211 GLEAN mRNA 429428 429491 0.361408 + . ID=CGI_10026946; scaffold211 TRF Tandem_Repeat 429428 429491 56 + . . scaffold211 GLEAN mRNA 429424 429495 0.361408 + . ID=CGI_10026946; scaffold211 TRF Tandem_Repeat 429424 429495 85 + . . scaffold211 GLEAN mRNA 442753 442895 0.361408 + . ID=CGI_10026946; scaffold211 TRF Tandem_Repeat 442753 442895 250 + . . scaffold211 GLEAN mRNA 425951 426409 0.361408 + . ID=CGI_10026946; scaffold211 TRF Tandem_Repeat 425951 426409 499 + . . scaffold211 GLEAN mRNA 460319 460449 0.611369 - . ID=CGI_10026948; scaffold211 TRF Tandem_Repeat 460319 460449 226 + . . scaffold211 GLEAN mRNA 461773 463396 0.611369 - . ID=CGI_10026948; scaffold211 TRF Tandem_Repeat 461773 463396 2442 + . . scaffold211 GLEAN mRNA 461773 463396 0.611369 - . ID=CGI_10026948; scaffold211 TRF Tandem_Repeat 461773 463396 2450 + . . scaffold211 GLEAN mRNA 461773 463396 0.611369 - . ID=CGI_10026948; scaffold211 TRF Tandem_Repeat 461773 463396 2466 + . . scaffold211 GLEAN mRNA 512540 512624 0.350865 + . ID=CGI_10026951; scaffold211 TRF Tandem_Repeat 512540 512624 134 + . . scaffold211 GLEAN mRNA 513128 513253 0.350865 + . ID=CGI_10026951; scaffold211 TRF Tandem_Repeat 513128 513253 131 + . . scaffold211 GLEAN mRNA 513128 513253 0.350865 + . ID=CGI_10026951; scaffold211 TRF Tandem_Repeat 513128 513253 108 + . . scaffold211 GLEAN mRNA 524264 524316 0.999693 + . ID=CGI_10026952; scaffold211 TRF Tandem_Repeat 524264 524316 106 + . . scaffold211 GLEAN mRNA 564783 564856 0.611829 - . ID=CGI_10026955; scaffold211 TRF Tandem_Repeat 564783 564856 61 + . . scaffold211 GLEAN mRNA 691720 691762 0.0754063 + . ID=CGI_10026960; scaffold211 TRF Tandem_Repeat 691720 691762 50 + . . scaffold211 GLEAN mRNA 694026 694188 0.0754063 + . ID=CGI_10026960; scaffold211 TRF Tandem_Repeat 694026 694188 120 + . . scaffold211 GLEAN mRNA 694079 694302 0.0754063 + . ID=CGI_10026960; scaffold211 TRF Tandem_Repeat 694079 694302 76 + . . scaffold211 GLEAN mRNA 694052 694316 0.0754063 + . ID=CGI_10026960; scaffold211 TRF Tandem_Repeat 694052 694316 403 + . . scaffold211 GLEAN mRNA 698048 698374 0.0754063 + . ID=CGI_10026960; scaffold211 TRF Tandem_Repeat 698048 698374 228 + . . scaffold211 GLEAN mRNA 699409 699846 0.0754063 + . ID=CGI_10026960; scaffold211 WUBlastX LINE_L1-Tx1 699409 699846 42 + . . scaffold211 GLEAN mRNA 701283 701417 0.0754063 + . ID=CGI_10026960; scaffold211 WUBlastX LINE_L2 701283 701417 29 + . . scaffold211 GLEAN mRNA 699478 699846 0.0754063 + . ID=CGI_10026960; scaffold211 WUBlastX LINE_L1-Tx1 699478 699846 143 + . . scaffold211 GLEAN mRNA 698613 698894 0.0754063 + . ID=CGI_10026960; scaffold211 WUBlastX LINE_CR1 698613 698894 58 - . . scaffold211 GLEAN mRNA 702979 703170 0.0754063 + . ID=CGI_10026960; scaffold211 WUBlastX LINE_RTE-X 702979 703170 35 + . . scaffold211 GLEAN mRNA 701343 702983 0.0754063 + . ID=CGI_10026960; scaffold211 WUBlastX LINE_L1-Tx1 701343 702983 615 + . . scaffold211 GLEAN mRNA 704072 704149 0.0754063 + . ID=CGI_10026960; scaffold211 WUBlastX LINE_RTE-BovB 704072 704149 21 + . . scaffold211 GLEAN mRNA 703018 703929 0.0754063 + . ID=CGI_10026960; scaffold211 WUBlastX LINE_L1-Tx1 703018 703929 251 + . . scaffold211 GLEAN mRNA 709433 709799 0.0754063 + . ID=CGI_10026960; scaffold211 TRF Tandem_Repeat 709433 709799 373 + . . scaffold211 GLEAN mRNA 709435 709796 0.0754063 + . ID=CGI_10026960; scaffold211 TRF Tandem_Repeat 709435 709796 382 + . . scaffold211 GLEAN mRNA 710427 710514 0.0754063 + . ID=CGI_10026960; scaffold211 TRF Tandem_Repeat 710427 710514 70 + . . scaffold211 GLEAN mRNA 710440 710732 0.0754063 + . ID=CGI_10026960; scaffold211 TRF Tandem_Repeat 710440 710732 442 + . . scaffold211 GLEAN mRNA 713149 713200 0.0754063 + . ID=CGI_10026960; scaffold211 TRF Tandem_Repeat 713149 713200 104 + . . scaffold211 GLEAN mRNA 745943 746369 0.75216 + . ID=CGI_10026964; scaffold211 TRF Tandem_Repeat 745943 746369 637 + . . scaffold211 GLEAN mRNA 773166 773216 0.153284 + . ID=CGI_10026965; scaffold211 TRF Tandem_Repeat 773166 773216 102 + . . scaffold211 GLEAN mRNA 773166 773216 0.999572 - . ID=CGI_10026966; scaffold211 TRF Tandem_Repeat 773166 773216 102 + . . scaffold211 GLEAN mRNA 959909 960091 0.999996 - . ID=CGI_10026971; scaffold211 TRF Tandem_Repeat 959909 960091 106 + . . scaffold211 GLEAN mRNA 960209 960734 0.999996 - . ID=CGI_10026971; scaffold211 TRF Tandem_Repeat 960209 960734 626 + . . scaffold211 GLEAN mRNA 964637 964845 0.999996 - . ID=CGI_10026971; scaffold211 TRF Tandem_Repeat 964637 964845 267 + . . scaffold211 GLEAN mRNA 971522 971854 0.999996 - . ID=CGI_10026971; scaffold211 WUBlastX LINE_CR1-L2 971522 971854 50 + . . scaffold211 GLEAN mRNA 969497 971362 0.999996 - . ID=CGI_10026971; scaffold211 WUBlastX LINE_CR1 969497 971362 1436 + . . scaffold211 GLEAN mRNA 971516 971800 0.999996 - . ID=CGI_10026971; scaffold211 WUBlastX LINE_CR1 971516 971800 180 + . . scaffold211 GLEAN mRNA 969465 969518 0.999996 - . ID=CGI_10026971; scaffold211 WUBlastX LINE_L2 969465 969518 21 + . . scaffold211 GLEAN mRNA 979658 979696 0.74015 + . ID=CGI_10026972; scaffold211 TRF Tandem_Repeat 979658 979696 69 + . . scaffold211 GLEAN mRNA 983959 984287 0.74015 + . ID=CGI_10026972; scaffold211 TRF Tandem_Repeat 983959 984287 493 + . . scaffold211 GLEAN mRNA 986243 986457 0.74015 + . ID=CGI_10026972; scaffold211 TRF Tandem_Repeat 986243 986457 215 + . . scaffold211 GLEAN mRNA 987929 987977 0.74015 + . ID=CGI_10026972; scaffold211 TRF Tandem_Repeat 987929 987977 98 + . . scaffold211 GLEAN mRNA 986558 986971 0.74015 + . ID=CGI_10026972; scaffold211 WUBlastX LINE_RTE-X 986558 986971 80 + . . scaffold211 GLEAN mRNA 986558 986866 0.74015 + . ID=CGI_10026972; scaffold211 WUBlastX LINE_RTE-X 986558 986866 82 + . . scaffold211 GLEAN mRNA 986498 986995 0.74015 + . ID=CGI_10026972; scaffold211 WUBlastX LINE_RTE-X 986498 986995 51 + . . scaffold211 GLEAN mRNA 1041515 1041854 0.560213 - . ID=CGI_10026974; scaffold211 TRF Tandem_Repeat 1041515 1041854 232 + . . scaffold211 GLEAN mRNA 1041515 1041853 0.560213 - . ID=CGI_10026974; scaffold211 TRF Tandem_Repeat 1041515 1041853 264 + . . scaffold211 GLEAN mRNA 1041515 1041830 0.560213 - . ID=CGI_10026974; scaffold211 TRF Tandem_Repeat 1041515 1041830 269 + . . scaffold211 GLEAN mRNA 1041571 1041850 0.560213 - . ID=CGI_10026974; scaffold211 TRF Tandem_Repeat 1041571 1041850 287 + . . scaffold211 GLEAN mRNA 1041945 1042058 0.560213 - . ID=CGI_10026974; scaffold211 TRF Tandem_Repeat 1041945 1042058 205 + . . scaffold211 GLEAN mRNA 1045165 1045270 0.560213 - . ID=CGI_10026974; scaffold211 TRF Tandem_Repeat 1045165 1045270 97 + . . scaffold211 GLEAN mRNA 1047662 1047690 0.976053 + . ID=CGI_10026975; scaffold211 TRF Tandem_Repeat 1047662 1047690 58 + . . scaffold211 GLEAN mRNA 1048875 1048945 0.976053 + . ID=CGI_10026975; scaffold211 TRF Tandem_Repeat 1048875 1048945 117 + . . scaffold211 GLEAN mRNA 1051855 1052291 0.976053 + . ID=CGI_10026975; scaffold211 TRF Tandem_Repeat 1051855 1052291 704 + . . scaffold211 GLEAN mRNA 1058369 1058400 0.976053 + . ID=CGI_10026975; scaffold211 TRF Tandem_Repeat 1058369 1058400 64 + . . scaffold211 GLEAN mRNA 1059918 1060134 0.976053 + . ID=CGI_10026975; scaffold211 TRF Tandem_Repeat 1059918 1060134 194 + . . scaffold211 GLEAN mRNA 1069866 1070299 0.999999 - . ID=CGI_10026977; scaffold211 TRF Tandem_Repeat 1069866 1070299 696 + . . scaffold211 GLEAN mRNA 1069866 1070299 0.999999 - . ID=CGI_10026977; scaffold211 TRF Tandem_Repeat 1069866 1070299 735 + . . scaffold211 GLEAN mRNA 1080103 1080446 0.998379 + . ID=CGI_10026978; scaffold211 TRF Tandem_Repeat 1080103 1080446 395 + . . scaffold211 GLEAN mRNA 1089704 1090786 0.998379 + . ID=CGI_10026978; scaffold211 TRF Tandem_Repeat 1089704 1090786 1465 + . . scaffold211 GLEAN mRNA 1092087 1093146 0.998379 + . ID=CGI_10026978; scaffold211 TRF Tandem_Repeat 1092087 1093146 1661 + . . scaffold211 GLEAN mRNA 1093412 1093722 0.998379 + . ID=CGI_10026978; scaffold211 TRF Tandem_Repeat 1093412 1093722 297 + . . scaffold211 GLEAN mRNA 1093409 1093722 0.998379 + . ID=CGI_10026978; scaffold211 TRF Tandem_Repeat 1093409 1093722 371 + . . scaffold211 GLEAN mRNA 1093412 1093722 0.998379 + . ID=CGI_10026978; scaffold211 TRF Tandem_Repeat 1093412 1093722 415 + . . scaffold211 GLEAN mRNA 1094024 1094101 0.998379 + . ID=CGI_10026978; scaffold211 TRF Tandem_Repeat 1094024 1094101 69 + . . scaffold211 GLEAN mRNA 1095927 1095981 0.998379 + . ID=CGI_10026978; scaffold211 TRF Tandem_Repeat 1095927 1095981 110 + . . scaffold211 GLEAN mRNA 1101324 1101388 0.998379 + . ID=CGI_10026978; scaffold211 TRF Tandem_Repeat 1101324 1101388 103 + . . scaffold211 GLEAN mRNA 1103511 1103548 0.998379 + . ID=CGI_10026978; scaffold211 TRF Tandem_Repeat 1103511 1103548 76 + . . scaffold211 GLEAN mRNA 1089704 1090786 0.999676 - . ID=CGI_10026979; scaffold211 TRF Tandem_Repeat 1089704 1090786 1465 + . . scaffold211 GLEAN mRNA 1092087 1093146 0.999676 - . ID=CGI_10026979; scaffold211 TRF Tandem_Repeat 1092087 1093146 1661 + . . scaffold211 GLEAN mRNA 1093412 1093722 0.999676 - . ID=CGI_10026979; scaffold211 TRF Tandem_Repeat 1093412 1093722 297 + . . scaffold211 GLEAN mRNA 1093409 1093722 0.999676 - . ID=CGI_10026979; scaffold211 TRF Tandem_Repeat 1093409 1093722 371 + . . scaffold211 GLEAN mRNA 1093412 1093722 0.999676 - . ID=CGI_10026979; scaffold211 TRF Tandem_Repeat 1093412 1093722 415 + . . scaffold211 GLEAN mRNA 1094024 1094101 0.999676 - . ID=CGI_10026979; scaffold211 TRF Tandem_Repeat 1094024 1094101 69 + . . scaffold211 GLEAN mRNA 1095927 1095981 0.999676 - . ID=CGI_10026979; scaffold211 TRF Tandem_Repeat 1095927 1095981 110 + . . scaffold211 GLEAN mRNA 1101324 1101388 0.882689 - . ID=CGI_10026980; scaffold211 TRF Tandem_Repeat 1101324 1101388 103 + . . scaffold211 GLEAN mRNA 1103511 1103548 0.882689 - . ID=CGI_10026980; scaffold211 TRF Tandem_Repeat 1103511 1103548 76 + . . scaffold211 GLEAN mRNA 1120170 1120334 0.392199 + . ID=CGI_10026981; scaffold211 TRF Tandem_Repeat 1120170 1120334 321 + . . scaffold211 GLEAN mRNA 1135156 1135194 1 + . ID=CGI_10026982; scaffold211 TRF Tandem_Repeat 1135156 1135194 78 + . . scaffold211 GLEAN mRNA 1163903 1163934 0.999676 - . ID=CGI_10026985; scaffold211 TRF Tandem_Repeat 1163903 1163934 64 + . . scaffold211 GLEAN mRNA 1172709 1172738 0.702385 - . ID=CGI_10026986; scaffold211 TRF Tandem_Repeat 1172709 1172738 60 + . . scaffold211 GLEAN mRNA 1216892 1217492 0.999115 - . ID=CGI_10026991; scaffold211 TRF Tandem_Repeat 1216892 1217492 698 + . . scaffold211 GLEAN mRNA 1218131 1219170 0.999115 - . ID=CGI_10026991; scaffold211 TRF Tandem_Repeat 1218131 1219170 1413 + . . scaffold211 GLEAN mRNA 1227999 1228072 0.889891 + . ID=CGI_10026992; scaffold211 TRF Tandem_Repeat 1227999 1228072 76 + . . scaffold211 GLEAN mRNA 1228023 1228106 0.889891 + . ID=CGI_10026992; scaffold211 TRF Tandem_Repeat 1228023 1228106 80 + . . scaffold211 GLEAN mRNA 1274697 1275065 1 - . ID=CGI_10026994; scaffold211 WUBlastX DNA_Sola 1274697 1275065 83 + . . scaffold471 GLEAN mRNA 35855 36681 0.645615 - . ID=CGI_10026997; scaffold471 TRF Tandem_Repeat 35855 36681 801 + . . scaffold471 GLEAN mRNA 46922 47121 0.74595 - . ID=CGI_10026998; scaffold471 TRF Tandem_Repeat 46922 47121 171 + . . scaffold471 GLEAN mRNA 46922 47121 0.74595 - . ID=CGI_10026998; scaffold471 TRF Tandem_Repeat 46922 47121 173 + . . scaffold471 GLEAN mRNA 54382 54436 0.74595 - . ID=CGI_10026998; scaffold471 TRF Tandem_Repeat 54382 54436 110 + . . scaffold471 GLEAN mRNA 54382 54436 0.119206 + . ID=CGI_10026999; scaffold471 TRF Tandem_Repeat 54382 54436 110 + . . scaffold471 GLEAN mRNA 58425 58465 0.119206 + . ID=CGI_10026999; scaffold471 TRF Tandem_Repeat 58425 58465 82 + . . scaffold471 GLEAN mRNA 67862 68068 0.119206 + . ID=CGI_10026999; scaffold471 WUBlastX LTR_ERV1 67862 68068 26 + . . scaffold471 GLEAN mRNA 91185 91681 0.999744 + . ID=CGI_10027000; scaffold471 TRF Tandem_Repeat 91185 91681 852 + . . scaffold471 GLEAN mRNA 88924 89076 0.999744 + . ID=CGI_10027000; scaffold471 WUBlastX LINE_RTE-BovB 88924 89076 56 - . . scaffold471 GLEAN mRNA 153842 154014 0.99778 - . ID=CGI_10027006; scaffold471 TRF Tandem_Repeat 153842 154014 103 + . . scaffold471 GLEAN mRNA 158163 158208 0.99778 - . ID=CGI_10027006; scaffold471 TRF Tandem_Repeat 158163 158208 92 + . . scaffold471 GLEAN mRNA 158328 158354 0.99778 - . ID=CGI_10027006; scaffold471 TRF Tandem_Repeat 158328 158354 54 + . . scaffold471 GLEAN mRNA 158422 158460 0.99778 - . ID=CGI_10027006; scaffold471 TRF Tandem_Repeat 158422 158460 78 + . . scaffold471 GLEAN mRNA 160238 160264 0.99778 - . ID=CGI_10027006; scaffold471 TRF Tandem_Repeat 160238 160264 54 + . . scaffold471 GLEAN mRNA 161579 161672 0.99778 - . ID=CGI_10027006; scaffold471 TRF Tandem_Repeat 161579 161672 147 + . . scaffold471 GLEAN mRNA 193689 193719 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 193689 193719 62 + . . scaffold471 GLEAN mRNA 194779 194848 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 194779 194848 140 + . . scaffold471 GLEAN mRNA 197136 197242 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 197136 197242 108 + . . scaffold471 GLEAN mRNA 200677 200722 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 200677 200722 85 + . . scaffold471 GLEAN mRNA 205685 205825 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 205685 205825 160 + . . scaffold471 GLEAN mRNA 205685 205825 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 205685 205825 160 + . . scaffold471 GLEAN mRNA 205685 205825 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 205685 205825 160 + . . scaffold471 GLEAN mRNA 208346 208398 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 208346 208398 106 + . . scaffold471 GLEAN mRNA 210016 210645 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 210016 210645 946 + . . scaffold471 GLEAN mRNA 199505 199708 0.137865 + . ID=CGI_10027007; scaffold471 WUBlastX LINE_CR1-L2 199505 199708 50 + . . scaffold471 GLEAN mRNA 199672 199830 0.137865 + . ID=CGI_10027007; scaffold471 WUBlastX LINE_CR1-L2 199672 199830 26 + . . scaffold471 GLEAN mRNA 214278 214334 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 214278 214334 114 + . . scaffold471 GLEAN mRNA 226582 226626 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 226582 226626 90 + . . scaffold471 GLEAN mRNA 226800 226870 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 226800 226870 142 + . . scaffold471 GLEAN mRNA 228818 228863 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 228818 228863 65 + . . scaffold471 GLEAN mRNA 230956 230989 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 230956 230989 68 + . . scaffold471 GLEAN mRNA 234039 234347 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 234039 234347 545 + . . scaffold471 GLEAN mRNA 325188 326165 0.636168 + . ID=CGI_10027009; scaffold471 WUBlastX DNA_IS4EU 325164 326165 445 + . . scaffold471 GLEAN mRNA 325404 326162 0.636168 + . ID=CGI_10027009; scaffold471 WUBlastX DNA_IS4EU 325404 326162 469 + . . scaffold471 GLEAN mRNA 423636 424148 0.507763 + . ID=CGI_10027011; scaffold471 TRF Tandem_Repeat 423636 424148 305 + . . scaffold471 GLEAN mRNA 423982 424130 0.507763 + . ID=CGI_10027011; scaffold471 TRF Tandem_Repeat 423982 424130 127 + . . scaffold471 GLEAN mRNA 423636 424148 0.9809 - . ID=CGI_10027012; scaffold471 TRF Tandem_Repeat 423636 424148 305 + . . scaffold471 GLEAN mRNA 423982 424130 0.9809 - . ID=CGI_10027012; scaffold471 TRF Tandem_Repeat 423982 424130 127 + . . scaffold471 GLEAN mRNA 427099 428104 0.9809 - . ID=CGI_10027012; scaffold471 TRF Tandem_Repeat 427099 428104 1104 + . . scaffold471 GLEAN mRNA 442915 443651 0.745374 - . ID=CGI_10027013; scaffold471 TRF Tandem_Repeat 442915 443651 909 + . . scaffold471 GLEAN mRNA 443242 443651 0.745374 - . ID=CGI_10027013; scaffold471 TRF Tandem_Repeat 443242 443651 398 + . . scaffold471 GLEAN mRNA 476660 476697 0.745374 - . ID=CGI_10027013; scaffold471 TRF Tandem_Repeat 476660 476697 60 + . . scaffold471 GLEAN mRNA 476835 477714 0.745374 - . ID=CGI_10027013; scaffold471 TRF Tandem_Repeat 476835 477714 1253 + . . scaffold471 GLEAN mRNA 478658 478804 0.745374 - . ID=CGI_10027013; scaffold471 TRF Tandem_Repeat 478658 478804 73 + . . scaffold471 GLEAN mRNA 478720 478868 0.745374 - . ID=CGI_10027013; scaffold471 TRF Tandem_Repeat 478720 478868 90 + . . scaffold471 GLEAN mRNA 476660 476697 0.499238 + . ID=CGI_10027015; scaffold471 TRF Tandem_Repeat 476660 476697 60 + . . scaffold471 GLEAN mRNA 476835 477714 0.499238 + . ID=CGI_10027015; scaffold471 TRF Tandem_Repeat 476835 477714 1253 + . . scaffold471 GLEAN mRNA 478658 478804 0.499238 + . ID=CGI_10027015; scaffold471 TRF Tandem_Repeat 478658 478804 73 + . . scaffold471 GLEAN mRNA 478720 478868 0.499238 + . ID=CGI_10027015; scaffold471 TRF Tandem_Repeat 478720 478868 90 + . . scaffold471 GLEAN mRNA 494330 494379 0.983469 - . ID=CGI_10027017; scaffold471 TRF Tandem_Repeat 494330 494379 91 + . . scaffold471 GLEAN mRNA 499644 499783 0.753966 + . ID=CGI_10027018; scaffold471 TRF Tandem_Repeat 499644 499783 77 + . . scaffold471 GLEAN mRNA 840011 840104 0.680395 - . ID=CGI_10027021; scaffold471 TRF Tandem_Repeat 840011 840104 72 + . . scaffold471 GLEAN mRNA 840016 840106 0.680395 - . ID=CGI_10027021; scaffold471 TRF Tandem_Repeat 840016 840106 55 + . . scaffold471 GLEAN mRNA 853037 853066 0.999795 + . ID=CGI_10027022; scaffold471 TRF Tandem_Repeat 853037 853066 51 + . . scaffold471 GLEAN mRNA 914301 914365 0.362984 - . ID=CGI_10027028; scaffold471 TRF Tandem_Repeat 914301 914365 55 + . . scaffold471 GLEAN mRNA 914303 914365 0.362984 - . ID=CGI_10027028; scaffold471 TRF Tandem_Repeat 914303 914365 64 + . . scaffold471 GLEAN mRNA 917326 917358 0.362984 - . ID=CGI_10027028; scaffold471 TRF Tandem_Repeat 917326 917358 66 + . . scaffold471 GLEAN mRNA 910964 911542 0.362984 - . ID=CGI_10027028; scaffold471 WUBlastX LINE_L2 910964 911542 22 - . . scaffold471 GLEAN mRNA 926919 926948 0.362984 - . ID=CGI_10027028; scaffold471 TRF Tandem_Repeat 926919 926948 51 + . . scaffold471 GLEAN mRNA 942406 942596 0.362984 - . ID=CGI_10027028; scaffold471 TRF Tandem_Repeat 942406 942596 213 + . . scaffold471 GLEAN mRNA 944509 945496 0.362984 - . ID=CGI_10027028; scaffold471 TRF Tandem_Repeat 944509 945496 1057 + . . scaffold471 GLEAN mRNA 944492 945496 0.362984 - . ID=CGI_10027028; scaffold471 TRF Tandem_Repeat 944492 945496 1298 + . . scaffold471 GLEAN mRNA 944492 945492 0.362984 - . ID=CGI_10027028; scaffold471 TRF Tandem_Repeat 944492 945492 1360 + . . scaffold471 GLEAN mRNA 944509 945492 0.362984 - . ID=CGI_10027028; scaffold471 TRF Tandem_Repeat 944509 945492 1276 + . . scaffold471 GLEAN mRNA 972197 972240 0.984594 - . ID=CGI_10027031; scaffold471 TRF Tandem_Repeat 972197 972240 88 + . . scaffold471 GLEAN mRNA 973746 973805 0.984594 - . ID=CGI_10027031; scaffold471 TRF Tandem_Repeat 973746 973805 86 + . . scaffold471 GLEAN mRNA 975553 975614 0.984594 - . ID=CGI_10027031; scaffold471 TRF Tandem_Repeat 975553 975614 124 + . . scaffold471 GLEAN mRNA 972197 972240 0.935502 + . ID=CGI_10027032; scaffold471 TRF Tandem_Repeat 972197 972240 88 + . . scaffold471 GLEAN mRNA 973746 973805 0.935502 + . ID=CGI_10027032; scaffold471 TRF Tandem_Repeat 973746 973805 86 + . . scaffold471 GLEAN mRNA 975553 975614 0.935502 + . ID=CGI_10027032; scaffold471 TRF Tandem_Repeat 975553 975614 124 + . . scaffold471 GLEAN mRNA 981311 981344 0.935502 + . ID=CGI_10027032; scaffold471 TRF Tandem_Repeat 981311 981344 68 + . . scaffold471 GLEAN mRNA 982977 983001 0.935502 + . ID=CGI_10027032; scaffold471 TRF Tandem_Repeat 982977 983001 50 + . . scaffold471 GLEAN mRNA 1122261 1122297 1 + . ID=CGI_10027035; scaffold471 TRF Tandem_Repeat 1122261 1122297 74 + . . scaffold471 GLEAN mRNA 1172762 1173108 0.79192 - . ID=CGI_10027036; scaffold471 TRF Tandem_Repeat 1172762 1173108 490 + . . scaffold471 GLEAN mRNA 1234712 1234764 0.423333 - . ID=CGI_10027038; scaffold471 TRF Tandem_Repeat 1234712 1234764 97 + . . scaffold471 GLEAN mRNA 1229012 1229992 0.423333 - . ID=CGI_10027038; scaffold471 WUBlastX DNA_MuDR 1229012 1229992 43 - . . scaffold471 GLEAN mRNA 1229012 1230214 0.423333 - . ID=CGI_10027038; scaffold471 WUBlastX DNA_MuDR 1229012 1230214 29 - . . scaffold471 GLEAN mRNA 1229420 1229791 0.423333 - . ID=CGI_10027038; scaffold471 WUBlastX DNA_MuDR 1229420 1229791 73 - . . scaffold471 GLEAN mRNA 1229420 1229671 0.423333 - . ID=CGI_10027038; scaffold471 WUBlastX DNA_MuDR 1229420 1229671 83 - . . scaffold471 GLEAN mRNA 1247361 1247512 1 - . ID=CGI_10027039; scaffold471 TRF Tandem_Repeat 1247361 1247512 121 + . . scaffold471 GLEAN mRNA 1247821 1247888 1 - . ID=CGI_10027039; scaffold471 TRF Tandem_Repeat 1247821 1247888 109 + . . scaffold471 GLEAN mRNA 1262753 1262788 1 - . ID=CGI_10027039; scaffold471 TRF Tandem_Repeat 1262753 1262788 63 + . . scaffold471 GLEAN mRNA 1262729 1262787 1 - . ID=CGI_10027039; scaffold471 TRF Tandem_Repeat 1262729 1262787 73 + . . scaffold433 GLEAN mRNA 31005 31049 0.551414 - . ID=CGI_10027044; scaffold433 TRF Tandem_Repeat 31005 31049 90 + . . scaffold433 GLEAN mRNA 60278 60316 0.8507 + . ID=CGI_10027047; scaffold433 TRF Tandem_Repeat 60278 60316 78 + . . scaffold433 GLEAN mRNA 67236 67285 1 - . ID=CGI_10027048; scaffold433 TRF Tandem_Repeat 67236 67285 50 + . . scaffold433 GLEAN mRNA 114689 114781 0.999675 + . ID=CGI_10027055; scaffold433 TRF Tandem_Repeat 114689 114781 161 + . . scaffold433 GLEAN mRNA 131203 131245 0.999675 + . ID=CGI_10027057; scaffold433 TRF Tandem_Repeat 131203 131245 68 + . . scaffold433 GLEAN mRNA 131201 131265 0.999675 + . ID=CGI_10027057; scaffold433 TRF Tandem_Repeat 131201 131265 67 + . . scaffold433 GLEAN mRNA 138275 138324 0.999675 + . ID=CGI_10027057; scaffold433 TRF Tandem_Repeat 138275 138324 55 + . . scaffold433 GLEAN mRNA 138348 139132 0.999675 + . ID=CGI_10027057; scaffold433 TRF Tandem_Repeat 138348 139132 997 + . . scaffold433 GLEAN mRNA 206897 206934 0.837765 + . ID=CGI_10027060; scaffold433 TRF Tandem_Repeat 206897 206934 76 + . . scaffold433 GLEAN mRNA 208519 208559 0.837765 + . ID=CGI_10027060; scaffold433 TRF Tandem_Repeat 208519 208559 82 + . . scaffold433 GLEAN mRNA 211022 211867 0.837765 + . ID=CGI_10027060; scaffold433 WUBlastX LTR_Copia 211022 211867 25 + . . scaffold433 GLEAN mRNA 224746 224781 0.837765 + . ID=CGI_10027060; scaffold433 TRF Tandem_Repeat 224746 224781 72 + . . scaffold433 GLEAN mRNA 224779 224819 0.837765 + . ID=CGI_10027060; scaffold433 TRF Tandem_Repeat 224779 224819 82 + . . scaffold433 GLEAN mRNA 292578 292668 1 + . ID=CGI_10027061; scaffold433 TRF Tandem_Repeat 292578 292668 69 + . . scaffold433 GLEAN mRNA 300022 300076 0.991068 + . ID=CGI_10027062; scaffold433 TRF Tandem_Repeat 300022 300076 60 + . . scaffold433 GLEAN mRNA 301491 301542 0.991068 + . ID=CGI_10027062; scaffold433 TRF Tandem_Repeat 301491 301542 104 + . . scaffold433 GLEAN mRNA 309718 310719 0.991068 + . ID=CGI_10027062; scaffold433 WUBlastX DNA_TcMar-Tc1 309718 310719 424 + . . scaffold433 GLEAN mRNA 317651 318013 0.999992 + . ID=CGI_10027063; scaffold433 WUBlastX LTR_DIRS 317651 318013 25 - . . scaffold433 GLEAN mRNA 333044 333075 0.999675 + . ID=CGI_10027064; scaffold433 TRF Tandem_Repeat 333044 333075 50 + . . scaffold433 GLEAN mRNA 336644 336676 0.999675 + . ID=CGI_10027064; scaffold433 TRF Tandem_Repeat 336644 336676 57 + . . scaffold433 GLEAN mRNA 337600 338319 0.999675 + . ID=CGI_10027064; scaffold433 WUBlastX LTR_Ngaro 337600 338319 242 + . . scaffold433 GLEAN mRNA 337705 338550 0.999675 + . ID=CGI_10027064; scaffold433 WUBlastX LTR_Ngaro 337705 338550 107 + . . scaffold433 GLEAN mRNA 338540 339715 0.999675 + . ID=CGI_10027064; scaffold433 WUBlastX LTR_Ngaro 338540 339715 821 + . . scaffold433 GLEAN mRNA 392302 392338 0.994277 + . ID=CGI_10027066; scaffold433 TRF Tandem_Repeat 392302 392338 74 + . . scaffold433 GLEAN mRNA 395517 395564 0.958773 + . ID=CGI_10027067; scaffold433 TRF Tandem_Repeat 395517 395564 52 + . . scaffold433 GLEAN mRNA 401029 401072 0.958773 + . ID=CGI_10027067; scaffold433 TRF Tandem_Repeat 401029 401072 52 + . . scaffold433 GLEAN mRNA 407737 408177 0.877924 + . ID=CGI_10027068; scaffold433 WUBlastX DNA_P 407737 408177 25 - . . scaffold433 GLEAN mRNA 407836 408825 0.877924 + . ID=CGI_10027068; scaffold433 WUBlastX DNA_P 407836 408825 565 - . . scaffold433 GLEAN mRNA 420821 420882 0.877924 + . ID=CGI_10027068; scaffold433 TRF Tandem_Repeat 420821 420882 67 + . . scaffold433 GLEAN mRNA 414001 414066 0.877924 + . ID=CGI_10027068; scaffold433 WUBlastX LINE_L1-Tx1 414001 414066 20 + . . scaffold433 GLEAN mRNA 408795 409760 0.877924 + . ID=CGI_10027068; scaffold433 WUBlastX DNA_P 408795 409760 332 - . . scaffold433 GLEAN mRNA 408795 409943 0.877924 + . ID=CGI_10027068; scaffold433 WUBlastX DNA_P 408795 409943 265 - . . scaffold433 GLEAN mRNA 443427 443465 1 + . ID=CGI_10027073; scaffold433 TRF Tandem_Repeat 443427 443465 78 + . . scaffold433 GLEAN mRNA 443512 443563 1 + . ID=CGI_10027073; scaffold433 TRF Tandem_Repeat 443512 443563 104 + . . scaffold433 GLEAN mRNA 460153 460244 0.317728 + . ID=CGI_10027074; scaffold433 TRF Tandem_Repeat 460153 460244 175 + . . scaffold433 GLEAN mRNA 463416 464051 0.317728 + . ID=CGI_10027074; scaffold433 TRF Tandem_Repeat 463416 464051 629 + . . scaffold433 GLEAN mRNA 463416 464033 0.317728 + . ID=CGI_10027074; scaffold433 TRF Tandem_Repeat 463416 464033 679 + . . scaffold433 GLEAN mRNA 470031 470069 0.317728 + . ID=CGI_10027074; scaffold433 TRF Tandem_Repeat 470031 470069 78 + . . scaffold433 GLEAN mRNA 470069 470107 0.317728 + . ID=CGI_10027074; scaffold433 TRF Tandem_Repeat 470069 470107 78 + . . scaffold433 GLEAN mRNA 471188 471254 0.317728 + . ID=CGI_10027074; scaffold433 TRF Tandem_Repeat 471188 471254 54 + . . scaffold433 GLEAN mRNA 472194 472240 0.317728 + . ID=CGI_10027074; scaffold433 TRF Tandem_Repeat 472194 472240 94 + . . scaffold433 GLEAN mRNA 472503 472550 0.317728 + . ID=CGI_10027074; scaffold433 TRF Tandem_Repeat 472503 472550 96 + . . scaffold433 GLEAN mRNA 466182 466574 0.317728 + . ID=CGI_10027074; scaffold433 WUBlastX LINE_RTE-X 466182 466574 29 + . . scaffold433 GLEAN mRNA 487472 488233 1 + . ID=CGI_10027077; scaffold433 TRF Tandem_Repeat 487472 488233 1362 + . . scaffold433 GLEAN mRNA 489743 490276 1 + . ID=CGI_10027077; scaffold433 TRF Tandem_Repeat 489743 490276 915 + . . scaffold433 GLEAN mRNA 546160 546193 0.99942 - . ID=CGI_10027080; scaffold433 TRF Tandem_Repeat 546160 546193 68 + . . scaffold433 GLEAN mRNA 551207 551252 0.99942 - . ID=CGI_10027080; scaffold433 TRF Tandem_Repeat 551207 551252 85 + . . scaffold433 GLEAN mRNA 598886 598912 0.99663 + . ID=CGI_10027082; scaffold433 TRF Tandem_Repeat 598886 598912 54 + . . scaffold433 GLEAN mRNA 611758 611899 0.99663 + . ID=CGI_10027082; scaffold433 TRF Tandem_Repeat 611758 611899 230 + . . scaffold433 GLEAN mRNA 614900 616084 0.99663 + . ID=CGI_10027082; scaffold433 TRF Tandem_Repeat 614900 616084 2028 + . . scaffold433 GLEAN mRNA 626397 628878 0.99663 + . ID=CGI_10027082; scaffold433 TRF Tandem_Repeat 626397 628878 3875 + . . scaffold433 GLEAN mRNA 626397 628878 0.99663 + . ID=CGI_10027082; scaffold433 TRF Tandem_Repeat 626397 628878 3658 + . . scaffold433 GLEAN mRNA 626397 628878 0.99663 + . ID=CGI_10027082; scaffold433 TRF Tandem_Repeat 626397 628878 3732 + . . scaffold433 GLEAN mRNA 681889 682676 0.664903 - . ID=CGI_10027087; scaffold433 TRF Tandem_Repeat 681889 682676 625 + . . scaffold433 GLEAN mRNA 812260 812619 0.351164 + . ID=CGI_10027093; scaffold433 WUBlastX LINE_RTE-X 812260 812619 89 + . . scaffold433 GLEAN mRNA 811896 812219 0.351164 + . ID=CGI_10027093; scaffold433 WUBlastX LINE_RTE-X 811896 812219 162 + . . scaffold433 GLEAN mRNA 847479 847520 0.870204 + . ID=CGI_10027096; scaffold433 TRF Tandem_Repeat 847479 847520 77 + . . scaffold433 GLEAN mRNA 876145 876940 0.593312 + . ID=CGI_10027098; scaffold433 TRF Tandem_Repeat 876145 876940 1402 + . . scaffold433 GLEAN mRNA 878119 879457 0.593312 + . ID=CGI_10027098; scaffold433 TRF Tandem_Repeat 878119 879457 1799 + . . scaffold433 GLEAN mRNA 889343 889486 0.999994 + . ID=CGI_10027099; scaffold433 WUBlastX LINE_R2-Hero 889343 889486 55 + . . scaffold433 GLEAN mRNA 889492 889569 0.999994 + . ID=CGI_10027099; scaffold433 WUBlastX LINE_R2-Hero 889492 889569 21 + . . scaffold433 GLEAN mRNA 972505 972566 0.655583 + . ID=CGI_10027101; scaffold433 TRF Tandem_Repeat 972505 972566 124 + . . scaffold433 GLEAN mRNA 973053 973177 0.655583 + . ID=CGI_10027101; scaffold433 TRF Tandem_Repeat 973053 973177 178 + . . scaffold433 GLEAN mRNA 994409 994515 0.655583 + . ID=CGI_10027101; scaffold433 TRF Tandem_Repeat 994409 994515 142 + . . scaffold433 GLEAN mRNA 996058 996148 0.655583 + . ID=CGI_10027101; scaffold433 TRF Tandem_Repeat 996058 996148 137 + . . scaffold433 GLEAN mRNA 997126 997400 0.655583 + . ID=CGI_10027101; scaffold433 TRF Tandem_Repeat 997126 997400 487 + . . scaffold433 GLEAN mRNA 1015593 1016106 0.593383 - . ID=CGI_10027104; scaffold433 TRF Tandem_Repeat 1015593 1016106 949 + . . scaffold433 GLEAN mRNA 1114637 1114900 0.362803 + . ID=CGI_10027108; scaffold433 TRF Tandem_Repeat 1114637 1114900 415 + . . scaffold433 GLEAN mRNA 1115187 1115664 0.362803 + . ID=CGI_10027108; scaffold433 TRF Tandem_Repeat 1115187 1115664 545 + . . scaffold433 GLEAN mRNA 1126279 1126338 0.994218 - . ID=CGI_10027109; scaffold433 TRF Tandem_Repeat 1126279 1126338 93 + . . scaffold433 GLEAN mRNA 1153767 1153801 0.829278 - . ID=CGI_10027111; scaffold433 TRF Tandem_Repeat 1153767 1153801 52 + . . scaffold433 GLEAN mRNA 1159905 1159970 0.829278 - . ID=CGI_10027111; scaffold433 TRF Tandem_Repeat 1159905 1159970 73 + . . scaffold433 GLEAN mRNA 1181721 1181775 1 - . ID=CGI_10027114; scaffold433 TRF Tandem_Repeat 1181721 1181775 65 + . . scaffold433 GLEAN mRNA 1181717 1181772 1 - . ID=CGI_10027114; scaffold433 TRF Tandem_Repeat 1181717 1181772 71 + . . scaffold433 GLEAN mRNA 1186288 1186338 0.999621 + . ID=CGI_10027115; scaffold433 TRF Tandem_Repeat 1186288 1186338 84 + . . scaffold433 GLEAN mRNA 1186349 1187044 0.999621 + . ID=CGI_10027115; scaffold433 TRF Tandem_Repeat 1186349 1187044 938 + . . scaffold433 GLEAN mRNA 1184155 1184229 0.999621 + . ID=CGI_10027115; scaffold433 WUBlastX DNA_Kolobok-Hyd 1184155 1184229 26 + . . scaffold433 GLEAN mRNA 1185063 1185257 0.999621 + . ID=CGI_10027115; scaffold433 WUBlastX DNA_Kolobok-Hyd 1185063 1185257 26 + . . scaffold433 GLEAN mRNA 1202667 1202765 0.999995 - . ID=CGI_10027118; scaffold433 WUBlastX LTR_Gypsy 1202667 1202960 32 - . . scaffold433 GLEAN mRNA 1202520 1202759 0.999995 - . ID=CGI_10027118; scaffold433 WUBlastX LTR_Pao 1202520 1202759 38 - . . scaffold433 GLEAN mRNA 1260426 1260611 0.626587 - . ID=CGI_10027122; scaffold433 WUBlastX LTR_DIRS 1260426 1260611 60 - . . scaffold433 GLEAN mRNA 1261618 1262157 0.626587 - . ID=CGI_10027122; scaffold433 WUBlastX DNA_Maverick 1261618 1262157 254 + . . scaffold433 GLEAN mRNA 1262933 1263718 0.626587 - . ID=CGI_10027122; scaffold433 WUBlastX DNA_PiggyBac 1262933 1263718 93 - . . scaffold433 GLEAN mRNA 1263332 1263790 0.626587 - . ID=CGI_10027122; scaffold433 WUBlastX DNA_PiggyBac 1263332 1263790 180 - . . scaffold433 GLEAN mRNA 1261584 1261646 0.626587 - . ID=CGI_10027122; scaffold433 WUBlastX DNA_Maverick 1261584 1261646 28 + . . scaffold433 GLEAN mRNA 1263149 1263631 0.626587 - . ID=CGI_10027122; scaffold433 WUBlastX DNA_PiggyBac 1263149 1263631 105 - . . scaffold433 GLEAN mRNA 1263383 1263733 0.626587 - . ID=CGI_10027122; scaffold433 WUBlastX DNA_PiggyBac 1263383 1263733 199 - . . scaffold433 GLEAN mRNA 1261563 1261664 0.626587 - . ID=CGI_10027122; scaffold433 WUBlastX DNA_Maverick 1261563 1261664 27 + . . scaffold433 GLEAN mRNA 1278000 1278844 1 + . ID=CGI_10027124; scaffold433 TRF Tandem_Repeat 1278000 1278844 1011 + . . scaffold433 GLEAN mRNA 1279377 1279520 1 + . ID=CGI_10027124; scaffold433 TRF Tandem_Repeat 1279377 1279520 116 + . . scaffold1599 GLEAN mRNA 6992 7427 0.69854 + . ID=CGI_10027125; scaffold1599 TRF Tandem_Repeat 6992 7427 276 + . . scaffold1599 GLEAN mRNA 13201 13247 1 - . ID=CGI_10027126; scaffold1599 TRF Tandem_Repeat 13201 13247 94 + . . scaffold1599 GLEAN mRNA 13245 13270 1 - . ID=CGI_10027126; scaffold1599 TRF Tandem_Repeat 13245 13270 52 + . . scaffold1599 GLEAN mRNA 16935 17090 1 - . ID=CGI_10027127; scaffold1599 TRF Tandem_Repeat 16935 17090 269 + . . scaffold1599 GLEAN mRNA 46806 46866 0.92776 + . ID=CGI_10027130; scaffold1599 TRF Tandem_Repeat 46806 46866 122 + . . scaffold1599 GLEAN mRNA 75514 75802 0.92776 + . ID=CGI_10027130; scaffold1599 TRF Tandem_Repeat 75514 75802 213 + . . scaffold1599 GLEAN mRNA 75531 75792 0.92776 + . ID=CGI_10027130; scaffold1599 TRF Tandem_Repeat 75531 75792 333 + . . scaffold1599 GLEAN mRNA 106177 106204 0.889395 + . ID=CGI_10027132; scaffold1599 TRF Tandem_Repeat 106177 106204 56 + . . scaffold1599 GLEAN mRNA 117126 117166 0.889395 + . ID=CGI_10027132; scaffold1599 TRF Tandem_Repeat 117126 117166 82 + . . scaffold1599 GLEAN mRNA 123195 124139 0.448272 - . ID=CGI_10027133; scaffold1599 TRF Tandem_Repeat 123195 124139 1487 + . . scaffold1599 GLEAN mRNA 126822 126959 0.448272 - . ID=CGI_10027133; scaffold1599 TRF Tandem_Repeat 126822 126959 116 + . . scaffold1599 GLEAN mRNA 144207 145980 0.999319 - . ID=CGI_10027134; scaffold1599 TRF Tandem_Repeat 144207 145980 1791 + . . scaffold1599 GLEAN mRNA 146612 146654 0.999319 - . ID=CGI_10027134; scaffold1599 TRF Tandem_Repeat 146612 146654 77 + . . scaffold1599 GLEAN mRNA 147974 148031 0.999319 - . ID=CGI_10027134; scaffold1599 TRF Tandem_Repeat 147974 148031 116 + . . scaffold1599 GLEAN mRNA 171124 171163 1 - . ID=CGI_10027135; scaffold1599 TRF Tandem_Repeat 171124 171163 80 + . . scaffold1599 GLEAN mRNA 189363 189387 0.999973 - . ID=CGI_10027137; scaffold1599 TRF Tandem_Repeat 189363 189387 50 + . . scaffold1599 GLEAN mRNA 208848 208913 0.999676 - . ID=CGI_10027141; scaffold1599 WUBlastX DNA_Sola 208848 208913 21 + . . scaffold1599 GLEAN mRNA 208582 208713 0.999676 - . ID=CGI_10027141; scaffold1599 WUBlastX DNA_Sola 208582 208713 61 + . . scaffold1599 GLEAN mRNA 208582 208692 0.999676 - . ID=CGI_10027141; scaffold1599 WUBlastX DNA_Sola 208582 208692 67 + . . scaffold1599 GLEAN mRNA 213608 213652 0.999676 - . ID=CGI_10027141; scaffold1599 TRF Tandem_Repeat 213608 213652 90 + . . scaffold1599 GLEAN mRNA 214887 215636 0.999676 - . ID=CGI_10027141; scaffold1599 WUBlastX LTR_Gypsy 214887 215636 196 + . . scaffold1599 GLEAN mRNA 214866 215900 0.999676 - . ID=CGI_10027141; scaffold1599 WUBlastX LTR_Gypsy 214866 215900 160 + . . scaffold1599 GLEAN mRNA 228793 228833 1 - . ID=CGI_10027142; scaffold1599 TRF Tandem_Repeat 228793 228833 55 + . . scaffold1599 GLEAN mRNA 230771 230810 1 - . ID=CGI_10027142; scaffold1599 TRF Tandem_Repeat 230771 230810 71 + . . scaffold1599 GLEAN mRNA 241792 241843 0.993706 - . ID=CGI_10027143; scaffold1599 TRF Tandem_Repeat 241792 241843 104 + . . scaffold1599 GLEAN mRNA 239899 240027 0.993706 - . ID=CGI_10027143; scaffold1599 WUBlastX LTR_Gypsy 239899 240027 22 - . . scaffold1599 GLEAN mRNA 239923 240117 0.993706 - . ID=CGI_10027143; scaffold1599 WUBlastX LTR_Gypsy 239923 240117 66 - . . scaffold1599 GLEAN mRNA 240492 240887 0.993706 - . ID=CGI_10027143; scaffold1599 WUBlastX LTR_Gypsy 240492 240887 102 - . . scaffold1599 GLEAN mRNA 240516 240743 0.993706 - . ID=CGI_10027143; scaffold1599 WUBlastX LTR_Gypsy 240516 240743 138 - . . scaffold1599 GLEAN mRNA 240504 240791 0.993706 - . ID=CGI_10027143; scaffold1599 WUBlastX LTR_Gypsy 240504 240791 137 - . . scaffold1599 GLEAN mRNA 239974 240513 0.993706 - . ID=CGI_10027143; scaffold1599 WUBlastX LTR_Gypsy 239974 240513 172 - . . scaffold1599 GLEAN mRNA 246612 246650 0.993706 - . ID=CGI_10027143; scaffold1599 WUBlastX LINE_Penelope 246612 246650 21 - . . scaffold1599 GLEAN mRNA 246074 246589 0.993706 - . ID=CGI_10027143; scaffold1599 WUBlastX LINE_Penelope 246074 246589 57 - . . scaffold1599 GLEAN mRNA 366700 366741 0.135254 + . ID=CGI_10027146; scaffold1599 TRF Tandem_Repeat 366700 366741 84 + . . scaffold1599 GLEAN mRNA 543392 543442 0.648153 + . ID=CGI_10027151; scaffold1599 TRF Tandem_Repeat 543392 543442 102 + . . scaffold1599 GLEAN mRNA 546984 547175 0.648153 + . ID=CGI_10027151; scaffold1599 WUBlastX LINE_L1-Tx1 546984 547175 69 + . . scaffold1599 GLEAN mRNA 543062 543208 0.648153 + . ID=CGI_10027151; scaffold1599 WUBlastX LINE_RTE-X 543062 543208 34 + . . scaffold1599 GLEAN mRNA 546981 547286 0.648153 + . ID=CGI_10027151; scaffold1599 WUBlastX LINE_L1-Tx1 546981 547286 31 + . . scaffold1599 GLEAN mRNA 546942 547148 0.648153 + . ID=CGI_10027151; scaffold1599 WUBlastX LINE_L1 546942 547148 30 + . . scaffold1599 GLEAN mRNA 556940 557020 0.924419 + . ID=CGI_10027152; scaffold1599 WUBlastX DNA_IS4EU 556940 557020 43 + . . scaffold1599 GLEAN mRNA 559400 560143 0.924419 + . ID=CGI_10027152; scaffold1599 WUBlastX DNA_IS4EU 559400 560143 343 - . . scaffold1599 GLEAN mRNA 558205 558291 0.924419 + . ID=CGI_10027152; scaffold1599 WUBlastX DNA_IS4EU 558205 558291 39 + . . scaffold1599 GLEAN mRNA 558411 558614 0.924419 + . ID=CGI_10027152; scaffold1599 WUBlastX DNA_IS4EU 558411 558614 83 + . . scaffold1599 GLEAN mRNA 631116 631265 0.579802 + . ID=CGI_10027154; scaffold1599 WUBlastX LINE_Penelope 631116 631265 56 + . . scaffold1599 GLEAN mRNA 680040 680354 0.501311 - . ID=CGI_10027155; scaffold1599 WUBlastX LINE_CR1-L2 680040 680354 56 + . . scaffold1599 GLEAN mRNA 678194 679579 0.501311 - . ID=CGI_10027155; scaffold1599 WUBlastX LTR_Gypsy 678194 679579 939 - . . scaffold1599 GLEAN mRNA 678293 679456 0.501311 - . ID=CGI_10027155; scaffold1599 WUBlastX LTR_Gypsy 678293 679456 1110 - . . scaffold1599 GLEAN mRNA 680142 680354 0.501311 - . ID=CGI_10027155; scaffold1599 WUBlastX LINE_L2 680142 680354 69 + . . scaffold1599 GLEAN mRNA 676605 677252 0.501311 - . ID=CGI_10027155; scaffold1599 WUBlastX LTR_Gypsy-Cigr 676605 677252 133 - . . scaffold1599 GLEAN mRNA 677263 678168 0.501311 - . ID=CGI_10027155; scaffold1599 WUBlastX LTR_Gypsy 677263 678168 689 - . . scaffold1599 GLEAN mRNA 677122 678039 0.501311 - . ID=CGI_10027155; scaffold1599 WUBlastX LTR_Gypsy 677122 678039 438 - . . scaffold1599 GLEAN mRNA 900919 900964 0.944926 - . ID=CGI_10027165; scaffold1599 TRF Tandem_Repeat 900919 900964 83 + . . scaffold1599 GLEAN mRNA 913095 913182 0.944926 - . ID=CGI_10027165; scaffold1599 TRF Tandem_Repeat 913095 913182 176 + . . scaffold1599 GLEAN mRNA 917598 917638 0.945682 - . ID=CGI_10027166; scaffold1599 TRF Tandem_Repeat 917598 917638 82 + . . scaffold1599 GLEAN mRNA 918019 918052 0.945682 - . ID=CGI_10027166; scaffold1599 TRF Tandem_Repeat 918019 918052 68 + . . scaffold1599 GLEAN mRNA 928135 928405 0.884536 - . ID=CGI_10027167; scaffold1599 TRF Tandem_Repeat 928135 928405 260 + . . scaffold1599 GLEAN mRNA 973022 973065 0.884901 - . ID=CGI_10027170; scaffold1599 TRF Tandem_Repeat 973022 973065 56 + . . scaffold1599 GLEAN mRNA 973013 973063 0.884901 - . ID=CGI_10027170; scaffold1599 TRF Tandem_Repeat 973013 973063 52 + . . scaffold1599 GLEAN mRNA 1002323 1002474 0.933427 + . ID=CGI_10027171; scaffold1599 TRF Tandem_Repeat 1002323 1002474 164 + . . scaffold1599 GLEAN mRNA 1053869 1054715 1 + . ID=CGI_10027172; scaffold1599 TRF Tandem_Repeat 1053869 1054715 1299 + . . scaffold1599 GLEAN mRNA 1063626 1063686 0.999999 + . ID=CGI_10027173; scaffold1599 TRF Tandem_Repeat 1063626 1063686 122 + . . scaffold1599 GLEAN mRNA 1067370 1067539 0.999999 + . ID=CGI_10027173; scaffold1599 TRF Tandem_Repeat 1067370 1067539 164 + . . scaffold1599 GLEAN mRNA 1080119 1080265 0.931132 + . ID=CGI_10027176; scaffold1599 TRF Tandem_Repeat 1080119 1080265 68 + . . scaffold1599 GLEAN mRNA 1080141 1080259 0.931132 + . ID=CGI_10027176; scaffold1599 TRF Tandem_Repeat 1080141 1080259 61 + . . scaffold1599 GLEAN mRNA 1080178 1080303 0.931132 + . ID=CGI_10027176; scaffold1599 TRF Tandem_Repeat 1080178 1080303 94 + . . scaffold1599 GLEAN mRNA 1080329 1080384 0.931132 + . ID=CGI_10027176; scaffold1599 TRF Tandem_Repeat 1080329 1080384 55 + . . scaffold1599 GLEAN mRNA 1086445 1086561 0.931132 + . ID=CGI_10027176; scaffold1599 TRF Tandem_Repeat 1086445 1086561 73 + . . scaffold1599 GLEAN mRNA 1086445 1086561 0.931132 + . ID=CGI_10027176; scaffold1599 TRF Tandem_Repeat 1086445 1086561 65 + . . scaffold1599 GLEAN mRNA 1086446 1086559 0.931132 + . ID=CGI_10027176; scaffold1599 TRF Tandem_Repeat 1086446 1086559 126 + . . scaffold1599 GLEAN mRNA 1092233 1094306 0.931132 + . ID=CGI_10027176; scaffold1599 TRF Tandem_Repeat 1092233 1094306 2416 + . . scaffold1599 GLEAN mRNA 1096786 1096870 0.999674 - . ID=CGI_10027177; scaffold1599 TRF Tandem_Repeat 1096786 1096870 134 + . . scaffold1599 GLEAN mRNA 1115130 1115171 0.902853 + . ID=CGI_10027180; scaffold1599 TRF Tandem_Repeat 1115130 1115171 84 + . . scaffold1599 GLEAN mRNA 1119341 1119372 0.902853 + . ID=CGI_10027180; scaffold1599 TRF Tandem_Repeat 1119341 1119372 64 + . . scaffold1599 GLEAN mRNA 1146967 1147060 0.937811 + . ID=CGI_10027182; scaffold1599 TRF Tandem_Repeat 1146967 1147060 80 + . . scaffold1599 GLEAN mRNA 1147160 1147278 0.937811 + . ID=CGI_10027182; scaffold1599 TRF Tandem_Repeat 1147160 1147278 105 + . . scaffold1599 GLEAN mRNA 1147327 1147468 0.937811 + . ID=CGI_10027182; scaffold1599 TRF Tandem_Repeat 1147327 1147468 142 + . . scaffold1599 GLEAN mRNA 1146810 1146929 0.937811 + . ID=CGI_10027182; scaffold1599 TRF Tandem_Repeat 1146810 1146929 98 + . . scaffold1599 GLEAN mRNA 1165102 1165135 0.639589 + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1165102 1165135 68 + . . scaffold1599 GLEAN mRNA 1182594 1182725 0.639589 + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1182594 1182725 171 + . . scaffold1599 GLEAN mRNA 1182862 1182933 0.639589 + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1182862 1182933 65 + . . scaffold1599 GLEAN mRNA 1184169 1184848 0.639589 + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1184169 1184848 134 + . . scaffold1599 GLEAN mRNA 1185034 1185128 0.639589 + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1185034 1185128 68 + . . scaffold1599 GLEAN mRNA 1185288 1185400 0.639589 + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1185288 1185400 100 + . . scaffold1599 GLEAN mRNA 1185288 1185400 0.639589 + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1185288 1185400 126 + . . scaffold1599 GLEAN mRNA 1185539 1185630 0.639589 + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1185539 1185630 62 + . . scaffold1599 GLEAN mRNA 1185796 1186001 0.639589 + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1185796 1186001 157 + . . scaffold1599 GLEAN mRNA 1185796 1185994 0.639589 + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1185796 1185994 136 + . . scaffold1599 GLEAN mRNA 1190627 1190666 0.639589 + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1190627 1190666 80 + . . scaffold1599 GLEAN mRNA 1190826 1190870 0.639589 + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1190826 1190870 90 + . . scaffold1599 GLEAN mRNA 1218501 1218549 0.987363 - . ID=CGI_10027185; scaffold1599 TRF Tandem_Repeat 1218501 1218549 98 + . . scaffold1599 GLEAN mRNA 1278188 1278306 0.458894 + . ID=CGI_10027189; scaffold1599 TRF Tandem_Repeat 1278188 1278306 127 + . . scaffold1599 GLEAN mRNA 1280661 1280745 0.458894 + . ID=CGI_10027189; scaffold1599 TRF Tandem_Repeat 1280661 1280745 149 + . . scaffold481 GLEAN mRNA 5732 5980 0.531221 + . ID=CGI_10027190; scaffold481 TRF Tandem_Repeat 5732 5980 198 + . . scaffold481 GLEAN mRNA 65080 65140 0.995785 + . ID=CGI_10027193; scaffold481 TRF Tandem_Repeat 65080 65140 122 + . . scaffold481 GLEAN mRNA 165637 165710 0.997431 + . ID=CGI_10027200; scaffold481 TRF Tandem_Repeat 165637 165710 76 + . . scaffold481 GLEAN mRNA 165637 165697 0.997431 + . ID=CGI_10027200; scaffold481 TRF Tandem_Repeat 165637 165697 83 + . . scaffold481 GLEAN mRNA 165638 165707 0.997431 + . ID=CGI_10027200; scaffold481 TRF Tandem_Repeat 165638 165707 67 + . . scaffold481 GLEAN mRNA 170052 170112 0.997431 + . ID=CGI_10027200; scaffold481 TRF Tandem_Repeat 170052 170112 77 + . . scaffold481 GLEAN mRNA 170046 170112 0.997431 + . ID=CGI_10027200; scaffold481 TRF Tandem_Repeat 170046 170112 127 + . . scaffold481 GLEAN mRNA 170275 170985 0.997431 + . ID=CGI_10027200; scaffold481 TRF Tandem_Repeat 170275 170985 1087 + . . scaffold481 GLEAN mRNA 176887 176949 0.997431 + . ID=CGI_10027200; scaffold481 TRF Tandem_Repeat 176887 176949 126 + . . scaffold481 GLEAN mRNA 177016 177056 0.997431 + . ID=CGI_10027200; scaffold481 TRF Tandem_Repeat 177016 177056 73 + . . scaffold481 GLEAN mRNA 327470 327518 0.998676 - . ID=CGI_10027207; scaffold481 TRF Tandem_Repeat 327470 327518 53 + . . scaffold481 GLEAN mRNA 327470 327527 0.998676 - . ID=CGI_10027207; scaffold481 TRF Tandem_Repeat 327470 327527 57 + . . scaffold481 GLEAN mRNA 327998 328196 0.998676 - . ID=CGI_10027207; scaffold481 TRF Tandem_Repeat 327998 328196 90 + . . scaffold481 GLEAN mRNA 327979 328264 0.998676 - . ID=CGI_10027207; scaffold481 TRF Tandem_Repeat 327979 328264 369 + . . scaffold481 GLEAN mRNA 334446 334529 0.998676 - . ID=CGI_10027207; scaffold481 TRF Tandem_Repeat 334446 334529 168 + . . scaffold481 GLEAN mRNA 336242 336296 0.998676 - . ID=CGI_10027207; scaffold481 TRF Tandem_Repeat 336242 336296 110 + . . scaffold481 GLEAN mRNA 360463 360514 0.933203 - . ID=CGI_10027209; scaffold481 TRF Tandem_Repeat 360463 360514 86 + . . scaffold481 GLEAN mRNA 365055 365450 0.933203 - . ID=CGI_10027209; scaffold481 TRF Tandem_Repeat 365055 365450 517 + . . scaffold481 GLEAN mRNA 365416 365599 0.933203 - . ID=CGI_10027209; scaffold481 TRF Tandem_Repeat 365416 365599 251 + . . scaffold481 GLEAN mRNA 422182 423099 1 - . ID=CGI_10027212; scaffold481 TRF Tandem_Repeat 422182 423099 1292 + . . scaffold481 GLEAN mRNA 424222 425345 1 - . ID=CGI_10027212; scaffold481 TRF Tandem_Repeat 424222 425345 1640 + . . scaffold481 GLEAN mRNA 425369 425427 1 - . ID=CGI_10027212; scaffold481 TRF Tandem_Repeat 425369 425427 64 + . . scaffold481 GLEAN mRNA 425369 425427 1 - . ID=CGI_10027212; scaffold481 TRF Tandem_Repeat 425369 425427 55 + . . scaffold481 GLEAN mRNA 425369 425422 1 - . ID=CGI_10027212; scaffold481 TRF Tandem_Repeat 425369 425422 81 + . . scaffold481 GLEAN mRNA 426306 426623 1 - . ID=CGI_10027212; scaffold481 TRF Tandem_Repeat 426306 426623 411 + . . scaffold481 GLEAN mRNA 430775 430819 0.639804 + . ID=CGI_10027213; scaffold481 TRF Tandem_Repeat 430775 430819 90 + . . scaffold481 GLEAN mRNA 456545 456614 0.811439 + . ID=CGI_10027216; scaffold481 TRF Tandem_Repeat 456545 456614 70 + . . scaffold481 GLEAN mRNA 456544 456616 0.811439 + . ID=CGI_10027216; scaffold481 TRF Tandem_Repeat 456544 456616 69 + . . scaffold481 GLEAN mRNA 457585 457637 0.811439 + . ID=CGI_10027216; scaffold481 TRF Tandem_Repeat 457585 457637 106 + . . scaffold481 GLEAN mRNA 504627 504722 0.993872 - . ID=CGI_10027220; scaffold481 TRF Tandem_Repeat 504627 504722 147 + . . scaffold481 GLEAN mRNA 515003 515028 0.993196 - . ID=CGI_10027221; scaffold481 TRF Tandem_Repeat 515003 515028 52 + . . scaffold481 GLEAN mRNA 519679 519763 0.541627 - . ID=CGI_10027222; scaffold481 TRF Tandem_Repeat 519679 519763 152 + . . scaffold481 GLEAN mRNA 535610 537183 0.728097 + . ID=CGI_10027223; scaffold481 TRF Tandem_Repeat 535610 537183 1978 + . . scaffold481 GLEAN mRNA 549422 549453 0.541632 - . ID=CGI_10027224; scaffold481 TRF Tandem_Repeat 549422 549453 64 + . . scaffold481 GLEAN mRNA 577116 577918 0.999885 - . ID=CGI_10027225; scaffold481 TRF Tandem_Repeat 577116 577918 844 + . . scaffold481 GLEAN mRNA 577925 578280 0.999885 - . ID=CGI_10027225; scaffold481 TRF Tandem_Repeat 577925 578280 440 + . . scaffold481 GLEAN mRNA 583201 583247 0.695901 - . ID=CGI_10027226; scaffold481 TRF Tandem_Repeat 583201 583247 76 + . . scaffold481 GLEAN mRNA 584337 584647 0.695901 - . ID=CGI_10027226; scaffold481 TRF Tandem_Repeat 584337 584647 424 + . . scaffold481 GLEAN mRNA 589780 589812 0.695901 - . ID=CGI_10027226; scaffold481 TRF Tandem_Repeat 589780 589812 66 + . . scaffold481 GLEAN mRNA 623486 623572 0.864758 + . ID=CGI_10027228; scaffold481 TRF Tandem_Repeat 623486 623572 174 + . . scaffold481 GLEAN mRNA 624010 624081 0.864758 + . ID=CGI_10027228; scaffold481 TRF Tandem_Repeat 624010 624081 135 + . . scaffold481 GLEAN mRNA 670304 670570 0.995695 + . ID=CGI_10027232; scaffold481 TRF Tandem_Repeat 670304 670570 489 + . . scaffold481 GLEAN mRNA 674343 674388 0.995695 + . ID=CGI_10027232; scaffold481 TRF Tandem_Repeat 674343 674388 92 + . . scaffold481 GLEAN mRNA 677817 677863 0.995695 + . ID=CGI_10027232; scaffold481 TRF Tandem_Repeat 677817 677863 94 + . . scaffold481 GLEAN mRNA 681548 681582 0.995695 + . ID=CGI_10027232; scaffold481 TRF Tandem_Repeat 681548 681582 70 + . . scaffold481 GLEAN mRNA 685266 685430 0.995695 + . ID=CGI_10027232; scaffold481 WUBlastX DNA_TcMar-m44 685266 685430 29 + . . scaffold481 GLEAN mRNA 685678 686607 0.995695 + . ID=CGI_10027232; scaffold481 WUBlastX DNA_TcMar-m44 685678 686607 583 + . . scaffold481 GLEAN mRNA 698080 698104 0.999998 + . ID=CGI_10027233; scaffold481 TRF Tandem_Repeat 698080 698104 50 + . . scaffold481 GLEAN mRNA 725735 725772 0.820423 + . ID=CGI_10027235; scaffold481 TRF Tandem_Repeat 725735 725772 60 + . . scaffold481 GLEAN mRNA 725818 726603 0.820423 + . ID=CGI_10027235; scaffold481 TRF Tandem_Repeat 725818 726603 910 + . . scaffold481 GLEAN mRNA 727549 727695 0.820423 + . ID=CGI_10027235; scaffold481 TRF Tandem_Repeat 727549 727695 73 + . . scaffold481 GLEAN mRNA 727611 727740 0.820423 + . ID=CGI_10027235; scaffold481 TRF Tandem_Repeat 727611 727740 93 + . . scaffold481 GLEAN mRNA 735093 735342 0.820423 + . ID=CGI_10027235; scaffold481 TRF Tandem_Repeat 735093 735342 227 + . . scaffold481 GLEAN mRNA 750190 750248 0.820423 + . ID=CGI_10027235; scaffold481 TRF Tandem_Repeat 750190 750248 111 + . . scaffold481 GLEAN mRNA 757884 757929 1 + . ID=CGI_10027237; scaffold481 TRF Tandem_Repeat 757884 757929 92 + . . scaffold481 GLEAN mRNA 771011 771057 0.999186 + . ID=CGI_10027240; scaffold481 TRF Tandem_Repeat 771011 771057 94 + . . scaffold481 GLEAN mRNA 779623 779647 1 + . ID=CGI_10027242; scaffold481 TRF Tandem_Repeat 779623 779647 50 + . . scaffold481 GLEAN mRNA 799491 799521 0.499675 + . ID=CGI_10027244; scaffold481 TRF Tandem_Repeat 799491 799521 62 + . . scaffold481 GLEAN mRNA 801018 801103 0.499675 + . ID=CGI_10027244; scaffold481 TRF Tandem_Repeat 801018 801103 165 + . . scaffold481 GLEAN mRNA 805694 805814 0.499675 + . ID=CGI_10027244; scaffold481 TRF Tandem_Repeat 805694 805814 163 + . . scaffold481 GLEAN mRNA 806040 806080 0.499675 + . ID=CGI_10027244; scaffold481 TRF Tandem_Repeat 806040 806080 82 + . . scaffold481 GLEAN mRNA 808333 808374 0.499675 + . ID=CGI_10027244; scaffold481 TRF Tandem_Repeat 808333 808374 68 + . . scaffold481 GLEAN mRNA 808332 808400 0.499675 + . ID=CGI_10027244; scaffold481 TRF Tandem_Repeat 808332 808400 65 + . . scaffold481 GLEAN mRNA 808331 808399 0.499675 + . ID=CGI_10027244; scaffold481 TRF Tandem_Repeat 808331 808399 63 + . . scaffold481 GLEAN mRNA 820660 820706 1 - . ID=CGI_10027246; scaffold481 TRF Tandem_Repeat 820660 820706 85 + . . scaffold481 GLEAN mRNA 835274 835310 0.860501 + . ID=CGI_10027247; scaffold481 TRF Tandem_Repeat 835274 835310 65 + . . scaffold481 GLEAN mRNA 864620 864812 0.992953 - . ID=CGI_10027248; scaffold481 TRF Tandem_Repeat 864620 864812 89 + . . scaffold481 GLEAN mRNA 866011 866071 0.992953 - . ID=CGI_10027248; scaffold481 TRF Tandem_Repeat 866011 866071 122 + . . scaffold481 GLEAN mRNA 872051 872101 0.992953 - . ID=CGI_10027248; scaffold481 TRF Tandem_Repeat 872051 872101 84 + . . scaffold481 GLEAN mRNA 872051 872101 0.992953 - . ID=CGI_10027248; scaffold481 TRF Tandem_Repeat 872051 872101 66 + . . scaffold481 GLEAN mRNA 905265 905298 0.99879 + . ID=CGI_10027253; scaffold481 TRF Tandem_Repeat 905265 905298 68 + . . scaffold481 GLEAN mRNA 913080 913150 0.99879 + . ID=CGI_10027253; scaffold481 TRF Tandem_Repeat 913080 913150 69 + . . scaffold481 GLEAN mRNA 926037 926062 0.800642 - . ID=CGI_10027254; scaffold481 TRF Tandem_Repeat 926037 926062 52 + . . scaffold481 GLEAN mRNA 997607 997632 0.430451 - . ID=CGI_10027256; scaffold481 TRF Tandem_Repeat 997607 997632 52 + . . scaffold481 GLEAN mRNA 1030377 1030438 0.63556 - . ID=CGI_10027257; scaffold481 TRF Tandem_Repeat 1030377 1030438 115 + . . scaffold481 GLEAN mRNA 1038033 1038278 0.978909 - . ID=CGI_10027258; scaffold481 WUBlastX DNA_TcMar-ISRm1 1038033 1038278 33 - . . scaffold481 GLEAN mRNA 1037973 1038025 0.978909 - . ID=CGI_10027258; scaffold481 WUBlastX DNA_TcMar-ISRm1 1037906 1038025 56 - . . scaffold481 GLEAN mRNA 1054669 1054749 0.5 - . ID=CGI_10027259; scaffold481 TRF Tandem_Repeat 1054669 1054749 135 + . . scaffold481 GLEAN mRNA 1053896 1053982 0.5 - . ID=CGI_10027259; scaffold481 WUBlastX DNA_hAT-Tip100 1053896 1053982 21 + . . scaffold481 GLEAN mRNA 1054023 1054388 0.5 - . ID=CGI_10027259; scaffold481 WUBlastX DNA_hAT-Tip100 1054023 1054388 85 + . . scaffold481 GLEAN mRNA 1053921 1054268 0.5 - . ID=CGI_10027259; scaffold481 WUBlastX DNA_hAT-Tip100 1053921 1054268 45 + . . scaffold481 GLEAN mRNA 1080699 1080833 0.999364 + . ID=CGI_10027261; scaffold481 WUBlastX LTR_Copia 1080699 1080833 40 + . . scaffold481 GLEAN mRNA 1090102 1090154 1 + . ID=CGI_10027263; scaffold481 TRF Tandem_Repeat 1090102 1090154 106 + . . scaffold481 GLEAN mRNA 1121644 1121684 1 - . ID=CGI_10027264; scaffold481 TRF Tandem_Repeat 1121644 1121684 82 + . . scaffold481 GLEAN mRNA 1209765 1209902 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1209765 1209902 62 - . . scaffold481 GLEAN mRNA 1198941 1199468 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LTR_Gypsy 1198941 1199468 103 + . . scaffold481 GLEAN mRNA 1209726 1210037 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_CR1 1209726 1210037 34 - . . scaffold481 GLEAN mRNA 1208958 1209881 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1208958 1209881 88 - . . scaffold481 GLEAN mRNA 1209299 1209541 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1209299 1209541 98 - . . scaffold481 GLEAN mRNA 1210676 1210969 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX DNA_Crypton 1210676 1210969 70 + . . scaffold481 GLEAN mRNA 1211520 1211816 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX DNA_Crypton 1211520 1211816 74 + . . scaffold481 GLEAN mRNA 1216164 1216901 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1216164 1216901 173 - . . scaffold481 GLEAN mRNA 1223253 1224059 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX DNA_IS4EU 1223253 1224059 359 - . . scaffold481 GLEAN mRNA 1222923 1223102 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX DNA_IS4EU 1222923 1223102 76 + . . scaffold481 GLEAN mRNA 1216428 1217159 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1216428 1217159 174 - . . scaffold481 GLEAN mRNA 1217188 1217259 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_RTE-X 1217188 1217259 20 - . . scaffold481 GLEAN mRNA 1218051 1219280 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LTR_Gypsy 1218051 1219280 299 - . . scaffold481 GLEAN mRNA 1225973 1226578 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LTR_Gypsy 1225973 1226578 134 - . . scaffold481 GLEAN mRNA 1216305 1216877 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1216305 1216877 209 - . . scaffold481 GLEAN mRNA 1226105 1227499 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LTR_Gypsy 1226105 1227499 798 - . . scaffold481 GLEAN mRNA 1216428 1216985 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1216428 1216985 256 - . . scaffold481 GLEAN mRNA 1216984 1217247 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1216984 1217247 99 - . . scaffold481 GLEAN mRNA 1217687 1218016 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LTR_Copia 1217687 1218016 25 - . . scaffold481 GLEAN mRNA 1222899 1223114 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX DNA_IS4EU 1222899 1223114 50 + . . scaffold481 GLEAN mRNA 1227733 1227825 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LTR_Gypsy 1227733 1227825 62 - . . scaffold481 GLEAN mRNA 1219310 1219873 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LTR_Gypsy 1219310 1219873 562 - . . scaffold481 GLEAN mRNA 1213639 1214187 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX DNA_Sola 1213639 1214187 38 + . . scaffold481 GLEAN mRNA 1216428 1216892 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1216428 1216892 291 - . . scaffold481 GLEAN mRNA 1214346 1215020 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX DNA_Sola 1214346 1215020 111 + . . scaffold481 GLEAN mRNA 1227495 1227722 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LTR_Gypsy 1227495 1227722 139 - . . scaffold481 GLEAN mRNA 1217774 1218256 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LTR_Gypsy 1217774 1218256 103 - . . scaffold481 GLEAN mRNA 1218255 1219388 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LTR_Gypsy 1218255 1219388 840 - . . scaffold481 GLEAN mRNA 1219310 1220215 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LTR_Gypsy 1219310 1220215 385 - . . scaffold481 GLEAN mRNA 1222683 1222805 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX DNA_IS4EU 1222683 1222805 49 + . . scaffold481 GLEAN mRNA 1229223 1229483 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1229223 1229483 37 - . . scaffold481 GLEAN mRNA 1229090 1229233 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1229090 1229233 41 - . . scaffold481 GLEAN mRNA 1229452 1229664 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1229452 1229664 94 - . . scaffold481 GLEAN mRNA 1234419 1234721 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L1-Tx1 1234419 1234721 76 + . . scaffold481 GLEAN mRNA 1229536 1229733 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1229536 1229733 75 - . . scaffold481 GLEAN mRNA 1229515 1229688 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_L2 1229515 1229688 98 - . . scaffold481 GLEAN mRNA 1234669 1234854 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LINE_CR1 1234669 1234854 74 + . . scaffold3 GLEAN mRNA 34362 34427 0.984416 - . ID=CGI_10027268; scaffold3 TRF Tandem_Repeat 34362 34427 53 + . . scaffold3 GLEAN mRNA 34362 34427 0.984416 - . ID=CGI_10027268; scaffold3 TRF Tandem_Repeat 34362 34427 64 + . . scaffold3 GLEAN mRNA 38305 38371 0.984416 - . ID=CGI_10027268; scaffold3 TRF Tandem_Repeat 38305 38371 89 + . . scaffold3 GLEAN mRNA 56926 56974 0.984416 - . ID=CGI_10027268; scaffold3 TRF Tandem_Repeat 56926 56974 73 + . . scaffold3 GLEAN mRNA 56926 56968 0.984416 - . ID=CGI_10027268; scaffold3 TRF Tandem_Repeat 56926 56968 59 + . . scaffold3 GLEAN mRNA 60044 60107 0.984416 - . ID=CGI_10027268; scaffold3 TRF Tandem_Repeat 60044 60107 76 + . . scaffold3 GLEAN mRNA 50715 51032 0.984416 - . ID=CGI_10027268; scaffold3 WUBlastX LINE_RTE-X 50715 51032 32 + . . scaffold3 GLEAN mRNA 50817 51062 0.984416 - . ID=CGI_10027268; scaffold3 WUBlastX LINE_RTE-X 50817 51062 81 + . . scaffold3 GLEAN mRNA 50769 51032 0.984416 - . ID=CGI_10027268; scaffold3 WUBlastX LINE_RTE-X 50769 51032 71 + . . scaffold3 GLEAN mRNA 50715 51032 0.999676 + . ID=CGI_10027269; scaffold3 WUBlastX LINE_RTE-X 50715 51032 32 + . . scaffold3 GLEAN mRNA 50817 51062 0.999676 + . ID=CGI_10027269; scaffold3 WUBlastX LINE_RTE-X 50817 51062 81 + . . scaffold3 GLEAN mRNA 50769 51032 0.999676 + . ID=CGI_10027269; scaffold3 WUBlastX LINE_RTE-X 50769 51032 71 + . . scaffold3 GLEAN mRNA 66365 66445 1 - . ID=CGI_10027271; scaffold3 TRF Tandem_Repeat 66365 66445 74 + . . scaffold3 GLEAN mRNA 110440 110940 0.739728 - . ID=CGI_10027273; scaffold3 WUBlastX LINE_L2 110440 110940 347 + . . scaffold3 GLEAN mRNA 116932 117657 0.999993 + . ID=CGI_10027276; scaffold3 WUBlastX LINE_L1-Tx1 116932 117657 64 + . . scaffold3 GLEAN mRNA 116935 117486 0.999993 + . ID=CGI_10027276; scaffold3 WUBlastX LINE_L1 116935 117486 77 + . . scaffold3 GLEAN mRNA 142582 142778 0.72249 + . ID=CGI_10027280; scaffold3 TRF Tandem_Repeat 142582 142778 148 + . . scaffold3 GLEAN mRNA 143472 143678 0.72249 + . ID=CGI_10027280; scaffold3 WUBlastX LINE_RTE-X 143472 143678 40 - . . scaffold3 GLEAN mRNA 143391 143678 0.72249 + . ID=CGI_10027280; scaffold3 WUBlastX LINE_RTE-X 143391 143678 31 - . . scaffold3 GLEAN mRNA 143520 143714 0.72249 + . ID=CGI_10027280; scaffold3 WUBlastX LINE_RTE-X 143520 143714 46 - . . scaffold3 GLEAN mRNA 168049 168080 0.866353 - . ID=CGI_10027281; scaffold3 TRF Tandem_Repeat 168049 168080 57 + . . scaffold3 GLEAN mRNA 168106 168158 0.866353 - . ID=CGI_10027281; scaffold3 TRF Tandem_Repeat 168106 168158 97 + . . scaffold3 GLEAN mRNA 188565 188590 0.866353 - . ID=CGI_10027281; scaffold3 TRF Tandem_Repeat 188565 188590 52 + . . scaffold3 GLEAN mRNA 191721 191754 0.866353 - . ID=CGI_10027281; scaffold3 TRF Tandem_Repeat 191721 191754 68 + . . scaffold3 GLEAN mRNA 191986 192022 0.866353 - . ID=CGI_10027281; scaffold3 TRF Tandem_Repeat 191986 192022 74 + . . scaffold3 GLEAN mRNA 193710 193771 0.866353 - . ID=CGI_10027281; scaffold3 TRF Tandem_Repeat 193710 193771 110 + . . scaffold3 GLEAN mRNA 197002 197079 0.866353 - . ID=CGI_10027281; scaffold3 TRF Tandem_Repeat 197002 197079 126 + . . scaffold3 GLEAN mRNA 197198 197231 0.866353 - . ID=CGI_10027281; scaffold3 TRF Tandem_Repeat 197198 197231 59 + . . scaffold3 GLEAN mRNA 206573 206706 0.866353 - . ID=CGI_10027281; scaffold3 TRF Tandem_Repeat 206573 206706 150 + . . scaffold3 GLEAN mRNA 242227 242268 0.996322 - . ID=CGI_10027283; scaffold3 TRF Tandem_Repeat 242227 242268 75 + . . scaffold3 GLEAN mRNA 260713 260781 0.999999 + . ID=CGI_10027286; scaffold3 TRF Tandem_Repeat 260713 260781 129 + . . scaffold3 GLEAN mRNA 290385 290438 0.456262 - . ID=CGI_10027289; scaffold3 WUBlastX DNA_Kolobok-Hyd 290385 290438 25 - . . scaffold3 GLEAN mRNA 289380 289703 0.456262 - . ID=CGI_10027289; scaffold3 WUBlastX DNA_Kolobok-Hyd 289380 289703 33 - . . scaffold3 GLEAN mRNA 289401 289895 0.456262 - . ID=CGI_10027289; scaffold3 WUBlastX DNA_Kolobok 289401 289895 23 - . . scaffold3 GLEAN mRNA 289365 289541 0.456262 - . ID=CGI_10027289; scaffold3 WUBlastX DNA_Kolobok-Hyd 289365 289541 52 - . . scaffold3 GLEAN mRNA 289961 290182 0.456262 - . ID=CGI_10027289; scaffold3 WUBlastX DNA_Kolobok-Hyd 289961 290182 38 - . . scaffold3 GLEAN mRNA 290346 290435 0.456262 - . ID=CGI_10027289; scaffold3 WUBlastX DNA_Kolobok-Hyd 290346 290435 20 - . . scaffold3 GLEAN mRNA 326595 326671 0.983702 - . ID=CGI_10027290; scaffold3 TRF Tandem_Repeat 326595 326671 127 + . . scaffold3 GLEAN mRNA 368083 368128 0.984893 - . ID=CGI_10027291; scaffold3 TRF Tandem_Repeat 368083 368128 92 + . . scaffold3 GLEAN mRNA 369630 370046 0.984893 - . ID=CGI_10027291; scaffold3 WUBlastX LINE_L1-Tx1 369630 370046 50 - . . scaffold3 GLEAN mRNA 369660 369944 0.984893 - . ID=CGI_10027291; scaffold3 WUBlastX LINE_L1-Tx1 369660 369944 78 - . . scaffold3 GLEAN mRNA 422575 423260 0.60379 + . ID=CGI_10027292; scaffold3 TRF Tandem_Repeat 422575 423260 984 + . . scaffold3 GLEAN mRNA 490964 491031 0.981193 - . ID=CGI_10027293; scaffold3 TRF Tandem_Repeat 490964 491031 122 + . . scaffold3 GLEAN mRNA 491997 492049 0.981193 - . ID=CGI_10027293; scaffold3 TRF Tandem_Repeat 491997 492049 88 + . . scaffold3 GLEAN mRNA 521350 521430 0.999999 + . ID=CGI_10027294; scaffold3 WUBlastX LTR_Gypsy 520909 521430 67 + . . scaffold3 GLEAN mRNA 670070 670291 1 + . ID=CGI_10027296; scaffold3 WUBlastX LINE_L2 670070 670291 64 + . . scaffold3 GLEAN mRNA 670070 670255 1 + . ID=CGI_10027296; scaffold3 WUBlastX LINE_CR1-L2 670070 670255 109 + . . scaffold3 GLEAN mRNA 670386 670589 1 + . ID=CGI_10027296; scaffold3 WUBlastX LINE_CR1-L2 670386 670589 35 + . . scaffold3 GLEAN mRNA 670597 670857 1 + . ID=CGI_10027296; scaffold3 WUBlastX LINE_RTE-X 670597 670857 33 + . . scaffold3 GLEAN mRNA 670386 670511 1 + . ID=CGI_10027296; scaffold3 WUBlastX LINE_CR1-L2 670386 670511 40 + . . scaffold3 GLEAN mRNA 670243 670773 1 + . ID=CGI_10027296; scaffold3 WUBlastX LINE_CR1-L2 670243 670773 30 + . . scaffold3 GLEAN mRNA 687521 687553 1 - . ID=CGI_10027297; scaffold3 TRF Tandem_Repeat 687521 687553 66 + . . scaffold3 GLEAN mRNA 692643 692674 1 - . ID=CGI_10027297; scaffold3 TRF Tandem_Repeat 692643 692674 64 + . . scaffold3 GLEAN mRNA 697113 697926 0.716963 + . ID=CGI_10027298; scaffold3 TRF Tandem_Repeat 697113 697926 1161 + . . scaffold3 GLEAN mRNA 740874 740898 0.975828 - . ID=CGI_10027299; scaffold3 TRF Tandem_Repeat 740874 740898 50 + . . scaffold3 GLEAN mRNA 742359 742432 0.975828 - . ID=CGI_10027299; scaffold3 TRF Tandem_Repeat 742359 742432 139 + . . scaffold3 GLEAN mRNA 790174 790614 0.588946 + . ID=CGI_10027302; scaffold3 WUBlastX LTR_Pao 790174 790614 53 + . . scaffold3 GLEAN mRNA 805736 805894 0.747251 + . ID=CGI_10027304; scaffold3 WUBlastX LINE_L1-Tx1 805736 805894 23 + . . scaffold3 GLEAN mRNA 806169 806294 0.747251 + . ID=CGI_10027304; scaffold3 WUBlastX LINE_L1 806169 806294 46 + . . scaffold3 GLEAN mRNA 805839 806372 0.747251 + . ID=CGI_10027304; scaffold3 WUBlastX LINE_L1 805839 806372 36 + . . scaffold3 GLEAN mRNA 866168 866894 0.835749 - . ID=CGI_10027308; scaffold3 TRF Tandem_Repeat 866168 866894 1027 + . . scaffold3 GLEAN mRNA 890432 891033 0.986991 - . ID=CGI_10027310; scaffold3 TRF Tandem_Repeat 890432 891033 870 + . . scaffold3 GLEAN mRNA 927185 927281 0.987084 + . ID=CGI_10027315; scaffold3 TRF Tandem_Repeat 927185 927281 185 + . . scaffold3 GLEAN mRNA 927185 927279 0.987084 + . ID=CGI_10027315; scaffold3 TRF Tandem_Repeat 927185 927279 153 + . . scaffold3 GLEAN mRNA 929891 930063 0.987084 + . ID=CGI_10027315; scaffold3 TRF Tandem_Repeat 929891 930063 211 + . . scaffold3 GLEAN mRNA 929891 930062 0.987084 + . ID=CGI_10027315; scaffold3 TRF Tandem_Repeat 929891 930062 208 + . . scaffold3 GLEAN mRNA 937583 937666 0.987084 + . ID=CGI_10027315; scaffold3 TRF Tandem_Repeat 937583 937666 168 + . . scaffold3 GLEAN mRNA 948886 949593 0.555132 + . ID=CGI_10027316; scaffold3 WUBlastX LTR_Ngaro 948886 949593 185 + . . scaffold3 GLEAN mRNA 949003 949599 0.555132 + . ID=CGI_10027316; scaffold3 WUBlastX LTR_Ngaro 949003 949599 265 + . . scaffold3 GLEAN mRNA 951950 951975 0.555132 + . ID=CGI_10027316; scaffold3 TRF Tandem_Repeat 951950 951975 52 + . . scaffold3 GLEAN mRNA 973297 973938 0.663393 + . ID=CGI_10027317; scaffold3 WUBlastX LTR_Ngaro 973297 973938 146 - . . scaffold3 GLEAN mRNA 974350 974796 0.663393 + . ID=CGI_10027317; scaffold3 WUBlastX LTR_Ngaro 974350 974796 97 - . . scaffold3 GLEAN mRNA 972496 973029 0.663393 + . ID=CGI_10027317; scaffold3 WUBlastX LTR_Ngaro 972496 973029 139 - . . scaffold3 GLEAN mRNA 973294 974598 0.663393 + . ID=CGI_10027317; scaffold3 WUBlastX LTR_Ngaro 973294 974598 116 - . . scaffold3 GLEAN mRNA 972956 973357 0.663393 + . ID=CGI_10027317; scaffold3 WUBlastX LTR_Ngaro 972956 973357 23 - . . scaffold3 GLEAN mRNA 1093593 1093617 1 + . ID=CGI_10027323; scaffold3 TRF Tandem_Repeat 1093593 1093617 50 + . . scaffold3 GLEAN mRNA 1153989 1154112 0.998753 - . ID=CGI_10027327; scaffold3 TRF Tandem_Repeat 1153989 1154112 77 + . . scaffold3 GLEAN mRNA 1159646 1159712 0.998753 - . ID=CGI_10027327; scaffold3 TRF Tandem_Repeat 1159646 1159712 80 + . . scaffold3 GLEAN mRNA 1162285 1162331 0.998753 - . ID=CGI_10027327; scaffold3 TRF Tandem_Repeat 1162285 1162331 94 + . . scaffold3 GLEAN mRNA 1162521 1162570 0.998753 - . ID=CGI_10027327; scaffold3 TRF Tandem_Repeat 1162521 1162570 55 + . . scaffold3 GLEAN mRNA 1162541 1162570 0.998753 - . ID=CGI_10027327; scaffold3 TRF Tandem_Repeat 1162541 1162570 51 + . . scaffold3 GLEAN mRNA 1162521 1162570 0.998753 - . ID=CGI_10027327; scaffold3 TRF Tandem_Repeat 1162521 1162570 55 + . . scaffold3 GLEAN mRNA 1163065 1163131 0.998753 - . ID=CGI_10027327; scaffold3 TRF Tandem_Repeat 1163065 1163131 71 + . . scaffold3 GLEAN mRNA 1170375 1170403 0.998753 - . ID=CGI_10027327; scaffold3 TRF Tandem_Repeat 1170375 1170403 58 + . . scaffold3 GLEAN mRNA 1170698 1170724 0.998753 - . ID=CGI_10027327; scaffold3 TRF Tandem_Repeat 1170698 1170724 54 + . . scaffold3 GLEAN mRNA 1185043 1185155 0.700522 + . ID=CGI_10027328; scaffold3 TRF Tandem_Repeat 1185043 1185155 65 + . . scaffold3 GLEAN mRNA 1185276 1186205 0.700522 + . ID=CGI_10027328; scaffold3 TRF Tandem_Repeat 1185276 1186205 1370 + . . scaffold3 GLEAN mRNA 1240390 1240453 0.794245 + . ID=CGI_10027329; scaffold3 TRF Tandem_Repeat 1240390 1240453 53 + . . scaffold3 GLEAN mRNA 1249317 1249401 0.264402 - . ID=CGI_10027330; scaffold3 TRF Tandem_Repeat 1249317 1249401 170 + . . scaffold3 GLEAN mRNA 1251428 1251557 0.264402 - . ID=CGI_10027330; scaffold3 TRF Tandem_Repeat 1251428 1251557 63 + . . scaffold3 GLEAN mRNA 1251435 1251556 0.264402 - . ID=CGI_10027330; scaffold3 TRF Tandem_Repeat 1251435 1251556 82 + . . scaffold3 GLEAN mRNA 1252546 1252608 0.264402 - . ID=CGI_10027330; scaffold3 TRF Tandem_Repeat 1252546 1252608 57 + . . scaffold3 GLEAN mRNA 1252557 1252671 0.264402 - . ID=CGI_10027330; scaffold3 TRF Tandem_Repeat 1252557 1252671 59 + . . scaffold3 GLEAN mRNA 1314969 1315355 0.999612 - . ID=CGI_10027337; scaffold3 WUBlastX LTR_Ngaro 1314969 1315355 171 - . . scaffold3 GLEAN mRNA 1315370 1315882 0.999612 - . ID=CGI_10027337; scaffold3 WUBlastX LTR_Ngaro 1315370 1315882 128 - . . scaffold3 GLEAN mRNA 1315938 1316159 0.999612 - . ID=CGI_10027337; scaffold3 WUBlastX LTR_Ngaro 1315938 1316159 115 - . . scaffold3 GLEAN mRNA 1315852 1316739 0.999612 - . ID=CGI_10027337; scaffold3 WUBlastX LTR_Ngaro 1315852 1316739 69 - . . scaffold3 GLEAN mRNA 1316434 1316787 0.999612 - . ID=CGI_10027337; scaffold3 WUBlastX LTR_Ngaro 1316434 1316787 143 - . . scaffold3 GLEAN mRNA 1316759 1317388 0.999612 - . ID=CGI_10027337; scaffold3 WUBlastX LTR_Ngaro 1316759 1317388 283 - . . scaffold3 GLEAN mRNA 1317717 1317779 0.999612 - . ID=CGI_10027337; scaffold3 WUBlastX LTR_Ngaro 1317717 1317779 26 - . . scaffold3 GLEAN mRNA 1317781 1318104 0.999612 - . ID=CGI_10027337; scaffold3 WUBlastX LTR_Ngaro 1317781 1318104 102 - . . scaffold1179 GLEAN mRNA 17715 17768 0.541662 + . ID=CGI_10027339; scaffold1179 TRF Tandem_Repeat 17715 17768 81 + . . scaffold1179 GLEAN mRNA 20852 20908 0.541662 + . ID=CGI_10027339; scaffold1179 TRF Tandem_Repeat 20852 20908 62 + . . scaffold1179 GLEAN mRNA 24536 24580 0.541662 + . ID=CGI_10027339; scaffold1179 TRF Tandem_Repeat 24536 24580 90 + . . scaffold1179 GLEAN mRNA 25524 25555 0.541662 + . ID=CGI_10027339; scaffold1179 TRF Tandem_Repeat 25524 25555 55 + . . scaffold1179 GLEAN mRNA 26465 26514 0.541662 + . ID=CGI_10027339; scaffold1179 TRF Tandem_Repeat 26465 26514 73 + . . scaffold1179 GLEAN mRNA 22773 22970 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy 22773 22970 111 + . . scaffold1179 GLEAN mRNA 22967 23077 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy 22967 23077 64 + . . scaffold1179 GLEAN mRNA 22195 22767 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy-Cigr 22195 22767 318 + . . scaffold1179 GLEAN mRNA 21997 22620 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy 21997 22620 162 + . . scaffold1179 GLEAN mRNA 23243 23497 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy-Cigr 23243 23497 57 + . . scaffold1179 GLEAN mRNA 18212 18355 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX DNA_Harbinger 18212 18355 69 + . . scaffold1179 GLEAN mRNA 22093 22626 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy 22093 22626 199 + . . scaffold1179 GLEAN mRNA 23544 23819 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy 23544 23819 54 + . . scaffold1179 GLEAN mRNA 23550 23741 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy 23550 23741 69 + . . scaffold1179 GLEAN mRNA 22183 22875 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy 22183 22875 202 + . . scaffold1179 GLEAN mRNA 23541 23708 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy 23541 23708 79 + . . scaffold1179 GLEAN mRNA 17090 17311 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX DNA_Harbinger 17090 17311 68 + . . scaffold1179 GLEAN mRNA 18342 18506 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX DNA_Harbinger 18342 18506 151 + . . scaffold1179 GLEAN mRNA 17889 18092 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX DNA_Harbinger 17889 18092 66 + . . scaffold1179 GLEAN mRNA 18609 18722 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX DNA_Harbinger 18609 18722 60 + . . scaffold1179 GLEAN mRNA 17862 18113 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX DNA_Harbinger 17862 18113 43 + . . scaffold1179 GLEAN mRNA 23243 23401 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy 23243 23401 64 + . . scaffold1179 GLEAN mRNA 23499 23657 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy 23499 23657 29 + . . scaffold1179 GLEAN mRNA 24077 24265 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy 24077 24265 20 + . . scaffold1179 GLEAN mRNA 22967 23140 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy 22967 23140 58 + . . scaffold1179 GLEAN mRNA 18300 18506 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX DNA_Harbinger 18300 18506 129 + . . scaffold1179 GLEAN mRNA 22192 22623 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX LTR_Gypsy 22192 22623 334 + . . scaffold1179 GLEAN mRNA 40623 40654 0.726285 + . ID=CGI_10027340; scaffold1179 TRF Tandem_Repeat 40623 40654 64 + . . scaffold1179 GLEAN mRNA 44236 44325 0.726285 + . ID=CGI_10027340; scaffold1179 WUBlastX LINE_CR1-L2 44236 44325 24 - . . scaffold1179 GLEAN mRNA 42459 44234 0.726285 + . ID=CGI_10027340; scaffold1179 WUBlastX LINE_CR1-L2 42459 44234 271 - . . scaffold1179 GLEAN mRNA 42459 43616 0.726285 + . ID=CGI_10027340; scaffold1179 WUBlastX LINE_CR1-L2 42459 43616 326 - . . scaffold1179 GLEAN mRNA 83679 83819 1 + . ID=CGI_10027341; scaffold1179 TRF Tandem_Repeat 83679 83819 102 + . . scaffold1179 GLEAN mRNA 88635 88664 1 + . ID=CGI_10027341; scaffold1179 TRF Tandem_Repeat 88635 88664 51 + . . scaffold1179 GLEAN mRNA 90253 90554 1 + . ID=CGI_10027341; scaffold1179 TRF Tandem_Repeat 90253 90554 277 + . . scaffold1179 GLEAN mRNA 90253 90554 1 + . ID=CGI_10027341; scaffold1179 TRF Tandem_Repeat 90253 90554 249 + . . scaffold1179 GLEAN mRNA 84454 84960 1 + . ID=CGI_10027341; scaffold1179 WUBlastX LINE_RTE-X 84454 84960 103 + . . scaffold1179 GLEAN mRNA 113009 113034 0.998746 - . ID=CGI_10027343; scaffold1179 TRF Tandem_Repeat 113009 113034 52 + . . scaffold1179 GLEAN mRNA 122097 122126 0.999925 + . ID=CGI_10027344; scaffold1179 TRF Tandem_Repeat 122097 122126 51 + . . scaffold1179 GLEAN mRNA 124165 124382 0.999925 + . ID=CGI_10027344; scaffold1179 TRF Tandem_Repeat 124165 124382 357 + . . scaffold1179 GLEAN mRNA 184793 184860 1 - . ID=CGI_10027347; scaffold1179 TRF Tandem_Repeat 184793 184860 84 + . . scaffold1179 GLEAN mRNA 187912 188515 1 - . ID=CGI_10027347; scaffold1179 TRF Tandem_Repeat 187912 188515 338 + . . scaffold1179 GLEAN mRNA 188619 188660 1 - . ID=CGI_10027347; scaffold1179 TRF Tandem_Repeat 188619 188660 66 + . . scaffold1179 GLEAN mRNA 191061 191739 1 - . ID=CGI_10027347; scaffold1179 TRF Tandem_Repeat 191061 191739 1160 + . . scaffold1179 GLEAN mRNA 198942 199377 1 - . ID=CGI_10027347; scaffold1179 TRF Tandem_Repeat 198942 199377 509 + . . scaffold1179 GLEAN mRNA 199011 199363 1 - . ID=CGI_10027347; scaffold1179 TRF Tandem_Repeat 199011 199363 373 + . . scaffold1179 GLEAN mRNA 216651 216687 0.999388 + . ID=CGI_10027348; scaffold1179 TRF Tandem_Repeat 216651 216687 65 + . . scaffold1179 GLEAN mRNA 226785 227054 0.999388 + . ID=CGI_10027348; scaffold1179 TRF Tandem_Repeat 226785 227054 495 + . . scaffold1179 GLEAN mRNA 247961 248223 0.999676 - . ID=CGI_10027350; scaffold1179 TRF Tandem_Repeat 247961 248223 228 + . . scaffold1179 GLEAN mRNA 307466 307504 0.985265 + . ID=CGI_10027353; scaffold1179 TRF Tandem_Repeat 307466 307504 78 + . . scaffold1179 GLEAN mRNA 340581 340812 0.999624 + . ID=CGI_10027356; scaffold1179 TRF Tandem_Repeat 340581 340812 118 + . . scaffold1179 GLEAN mRNA 362504 362543 0.999538 + . ID=CGI_10027358; scaffold1179 TRF Tandem_Repeat 362504 362543 80 + . . scaffold1179 GLEAN mRNA 362708 362748 0.999538 + . ID=CGI_10027358; scaffold1179 TRF Tandem_Repeat 362708 362748 82 + . . scaffold1179 GLEAN mRNA 367085 367427 0.999538 + . ID=CGI_10027358; scaffold1179 TRF Tandem_Repeat 367085 367427 550 + . . scaffold1179 GLEAN mRNA 368203 369811 0.999538 + . ID=CGI_10027358; scaffold1179 TRF Tandem_Repeat 368203 369811 1156 + . . scaffold1179 GLEAN mRNA 368203 369811 0.999538 + . ID=CGI_10027358; scaffold1179 TRF Tandem_Repeat 368203 369811 1281 + . . scaffold1179 GLEAN mRNA 375503 375670 0.999538 + . ID=CGI_10027358; scaffold1179 TRF Tandem_Repeat 375503 375670 264 + . . scaffold1179 GLEAN mRNA 375503 375670 0.998947 - . ID=CGI_10027359; scaffold1179 TRF Tandem_Repeat 375503 375670 264 + . . scaffold1179 GLEAN mRNA 439370 439414 0.999948 - . ID=CGI_10027365; scaffold1179 TRF Tandem_Repeat 439370 439414 83 + . . scaffold1179 GLEAN mRNA 439719 439775 0.999948 - . ID=CGI_10027365; scaffold1179 TRF Tandem_Repeat 439719 439775 114 + . . scaffold1179 GLEAN mRNA 443994 444206 0.999948 - . ID=CGI_10027365; scaffold1179 WUBlastX DNA_Harbinger 443994 444206 91 + . . scaffold1179 GLEAN mRNA 454708 454757 1 - . ID=CGI_10027367; scaffold1179 TRF Tandem_Repeat 454708 454757 52 + . . scaffold1179 GLEAN mRNA 480682 480813 0.593391 - . ID=CGI_10027372; scaffold1179 WUBlastX LINE_RTE-X 480682 480819 24 + . . scaffold1179 GLEAN mRNA 485605 485669 0.993584 + . ID=CGI_10027373; scaffold1179 TRF Tandem_Repeat 485605 485669 112 + . . scaffold1179 GLEAN mRNA 492175 492655 0.993584 + . ID=CGI_10027373; scaffold1179 TRF Tandem_Repeat 492175 492655 593 + . . scaffold1179 GLEAN mRNA 515290 515358 0.983468 + . ID=CGI_10027375; scaffold1179 TRF Tandem_Repeat 515290 515358 138 + . . scaffold1179 GLEAN mRNA 587943 587976 0.399321 - . ID=CGI_10027379; scaffold1179 TRF Tandem_Repeat 587943 587976 68 + . . scaffold1179 GLEAN mRNA 595796 595948 0.399321 - . ID=CGI_10027379; scaffold1179 TRF Tandem_Repeat 595796 595948 227 + . . scaffold1179 GLEAN mRNA 596318 596390 0.399321 - . ID=CGI_10027379; scaffold1179 TRF Tandem_Repeat 596318 596390 146 + . . scaffold1179 GLEAN mRNA 859915 859959 0.430656 + . ID=CGI_10027390; scaffold1179 TRF Tandem_Repeat 859915 859959 90 + . . scaffold1179 GLEAN mRNA 910463 911074 0.727725 - . ID=CGI_10027392; scaffold1179 WUBlastX LTR_Gypsy 910463 911074 73 - . . scaffold1179 GLEAN mRNA 910301 910573 0.727725 - . ID=CGI_10027392; scaffold1179 WUBlastX LTR_Copia 910301 910573 51 - . . scaffold1179 GLEAN mRNA 940877 941167 0.224969 + . ID=CGI_10027393; scaffold1179 WUBlastX LINE_L1 940877 941167 33 + . . scaffold1179 GLEAN mRNA 939636 939992 0.224969 + . ID=CGI_10027393; scaffold1179 WUBlastX LINE_L1-Tx1 939636 939992 80 + . . scaffold1179 GLEAN mRNA 939452 939559 0.224969 + . ID=CGI_10027393; scaffold1179 WUBlastX LINE_L1-Tx1 939452 939559 89 - . . scaffold1179 GLEAN mRNA 940955 941167 0.224969 + . ID=CGI_10027393; scaffold1179 WUBlastX LINE_L1-Tx1 940955 941167 77 + . . scaffold1179 GLEAN mRNA 939636 939869 0.224969 + . ID=CGI_10027393; scaffold1179 WUBlastX LINE_L1-Tx1 939636 939869 97 + . . scaffold1179 GLEAN mRNA 939636 939917 0.224969 + . ID=CGI_10027393; scaffold1179 WUBlastX LINE_L1-Tx1 939636 939917 81 + . . scaffold1179 GLEAN mRNA 939540 939812 0.224969 + . ID=CGI_10027393; scaffold1179 WUBlastX LINE_L1 939540 939812 87 + . . scaffold1179 GLEAN mRNA 939636 939812 0.224969 + . ID=CGI_10027393; scaffold1179 WUBlastX LINE_L1 939636 939812 122 + . . scaffold1179 GLEAN mRNA 940955 941209 0.224969 + . ID=CGI_10027393; scaffold1179 WUBlastX LINE_L1 940955 941209 25 + . . scaffold1179 GLEAN mRNA 1009785 1009827 0.999716 - . ID=CGI_10027394; scaffold1179 TRF Tandem_Repeat 1009785 1009827 77 + . . scaffold1179 GLEAN mRNA 1036787 1036832 0.654722 + . ID=CGI_10027396; scaffold1179 TRF Tandem_Repeat 1036787 1036832 92 + . . scaffold1179 GLEAN mRNA 1066773 1066829 0.970354 + . ID=CGI_10027400; scaffold1179 TRF Tandem_Repeat 1066773 1066829 107 + . . scaffold1179 GLEAN mRNA 1068130 1068336 0.970354 + . ID=CGI_10027400; scaffold1179 WUBlastX LINE_RTE-BovB 1068130 1068336 85 - . . scaffold1179 GLEAN mRNA 1184311 1184361 0.999671 - . ID=CGI_10027411; scaffold1179 TRF Tandem_Repeat 1184311 1184361 102 + . . scaffold1179 GLEAN mRNA 1201910 1202026 1 + . ID=CGI_10027413; scaffold1179 TRF Tandem_Repeat 1201910 1202026 207 + . . scaffold1179 GLEAN mRNA 1195981 1196073 1 + . ID=CGI_10027413; scaffold1179 TRF Tandem_Repeat 1195981 1196073 186 + . . scaffold1179 GLEAN mRNA 1214496 1214542 0.457085 - . ID=CGI_10027415; scaffold1179 TRF Tandem_Repeat 1214496 1214542 94 + . . scaffold1179 GLEAN mRNA 1212986 1213552 0.457085 - . ID=CGI_10027415; scaffold1179 WUBlastX LINE_L1 1212986 1213552 70 + . . scaffold1179 GLEAN mRNA 1213256 1214002 0.457085 - . ID=CGI_10027415; scaffold1179 WUBlastX LINE_L1-Tx1 1213256 1214002 87 + . . scaffold1179 GLEAN mRNA 1212986 1213156 0.457085 - . ID=CGI_10027415; scaffold1179 WUBlastX LINE_L1 1212986 1213156 71 + . . scaffold1179 GLEAN mRNA 1213967 1214215 0.457085 - . ID=CGI_10027415; scaffold1179 WUBlastX LINE_L1 1213967 1214215 51 + . . scaffold1179 GLEAN mRNA 1214063 1214206 0.457085 - . ID=CGI_10027415; scaffold1179 WUBlastX LINE_L1-Tx1 1214063 1214206 55 + . . scaffold1179 GLEAN mRNA 1235685 1235753 0.415854 - . ID=CGI_10027416; scaffold1179 TRF Tandem_Repeat 1235685 1235753 113 + . . scaffold1179 GLEAN mRNA 1235685 1235747 0.415854 - . ID=CGI_10027416; scaffold1179 TRF Tandem_Repeat 1235685 1235747 99 + . . scaffold1179 GLEAN mRNA 1244928 1244970 0.415854 - . ID=CGI_10027416; scaffold1179 TRF Tandem_Repeat 1244928 1244970 50 + . . scaffold1179 GLEAN mRNA 1255839 1255867 0.415854 - . ID=CGI_10027416; scaffold1179 TRF Tandem_Repeat 1255839 1255867 51 + . . scaffold1179 GLEAN mRNA 1288828 1288859 0.887369 + . ID=CGI_10027419; scaffold1179 TRF Tandem_Repeat 1288828 1288859 55 + . . scaffold1179 GLEAN mRNA 1289031 1290153 0.887369 + . ID=CGI_10027419; scaffold1179 TRF Tandem_Repeat 1289031 1290153 1389 + . . scaffold1179 GLEAN mRNA 1299484 1301928 0.887369 + . ID=CGI_10027419; scaffold1179 WUBlastX LTR_Gypsy 1299484 1301928 1966 - . . scaffold1179 GLEAN mRNA 1298091 1299542 0.887369 + . ID=CGI_10027419; scaffold1179 WUBlastX LTR_Gypsy 1298091 1299542 1173 - . . scaffold1179 GLEAN mRNA 1295122 1295256 0.887369 + . ID=CGI_10027419; scaffold1179 WUBlastX DNA_P 1295122 1295256 58 + . . scaffold1179 GLEAN mRNA 1295044 1295274 0.887369 + . ID=CGI_10027419; scaffold1179 WUBlastX LTR_Gypsy 1295044 1295274 55 + . . scaffold1179 GLEAN mRNA 1331836 1332051 0.992318 - . ID=CGI_10027421; scaffold1179 WUBlastX DNA_PiggyBac 1331836 1332051 36 - . . scaffold1179 GLEAN mRNA 1335160 1335432 0.976862 - . ID=CGI_10027422; scaffold1179 WUBlastX DNA_PiggyBac 1335160 1335432 38 - . . scaffold1179 GLEAN mRNA 1334386 1334601 0.976862 - . ID=CGI_10027422; scaffold1179 WUBlastX DNA_PiggyBac 1334386 1334601 65 - . . scaffold1179 GLEAN mRNA 1337401 1337733 0.999954 - . ID=CGI_10027423; scaffold1179 WUBlastX DNA_PiggyBac 1337401 1337733 38 - . . scaffold1179 GLEAN mRNA 1348017 1348056 1 + . ID=CGI_10027424; scaffold1179 TRF Tandem_Repeat 1348017 1348056 80 + . . scaffold1213 GLEAN mRNA 46485 46732 0.920174 - . ID=CGI_10027426; scaffold1213 TRF Tandem_Repeat 46485 46732 319 + . . scaffold1213 GLEAN mRNA 47915 47952 0.920174 - . ID=CGI_10027426; scaffold1213 TRF Tandem_Repeat 47915 47952 76 + . . scaffold1213 GLEAN mRNA 52284 52343 0.920174 - . ID=CGI_10027426; scaffold1213 TRF Tandem_Repeat 52284 52343 57 + . . scaffold1213 GLEAN mRNA 58311 58376 0.920174 - . ID=CGI_10027426; scaffold1213 TRF Tandem_Repeat 58311 58376 123 + . . scaffold1213 GLEAN mRNA 52040 52255 0.920174 - . ID=CGI_10027426; scaffold1213 WUBlastX LINE_RTE-X 52040 52255 60 + . . scaffold1213 GLEAN mRNA 51920 52234 0.920174 - . ID=CGI_10027426; scaffold1213 WUBlastX LINE_RTE-X 51920 52234 31 + . . scaffold1213 GLEAN mRNA 67497 67557 0.920174 - . ID=CGI_10027426; scaffold1213 TRF Tandem_Repeat 67497 67557 122 + . . scaffold1213 GLEAN mRNA 148862 149142 1 + . ID=CGI_10027437; scaffold1213 TRF Tandem_Repeat 148862 149142 284 + . . scaffold1213 GLEAN mRNA 149439 149703 1 + . ID=CGI_10027437; scaffold1213 TRF Tandem_Repeat 149439 149703 253 + . . scaffold1213 GLEAN mRNA 162243 163028 0.999676 - . ID=CGI_10027438; scaffold1213 TRF Tandem_Repeat 162243 163028 804 + . . scaffold1213 GLEAN mRNA 166322 167799 0.999676 - . ID=CGI_10027438; scaffold1213 TRF Tandem_Repeat 166322 167799 1369 + . . scaffold1213 GLEAN mRNA 177133 178281 1 - . ID=CGI_10027439; scaffold1213 WUBlastX LINE_RTE-X 177133 178281 308 - . . scaffold1213 GLEAN mRNA 195758 195820 0.999949 + . ID=CGI_10027440; scaffold1213 TRF Tandem_Repeat 195758 195820 126 + . . scaffold1213 GLEAN mRNA 228816 228862 0.989794 + . ID=CGI_10027441; scaffold1213 TRF Tandem_Repeat 228816 228862 94 + . . scaffold1213 GLEAN mRNA 250226 250603 0.989794 + . ID=CGI_10027441; scaffold1213 WUBlastX DNA_TcMar-Tc1 250226 250603 127 - . . scaffold1213 GLEAN mRNA 251076 251294 0.989794 + . ID=CGI_10027441; scaffold1213 WUBlastX DNA_TcMar-Tc1 251076 251294 94 - . . scaffold1213 GLEAN mRNA 250932 251288 0.989794 + . ID=CGI_10027441; scaffold1213 WUBlastX DNA_TcMar-Tc1 250932 251288 74 - . . scaffold1213 GLEAN mRNA 250202 250678 0.989794 + . ID=CGI_10027441; scaffold1213 WUBlastX DNA_TcMar-Tc1 250202 250678 117 - . . scaffold1213 GLEAN mRNA 290595 290964 0.999743 + . ID=CGI_10027447; scaffold1213 TRF Tandem_Repeat 290595 290964 573 + . . scaffold1213 GLEAN mRNA 293920 294692 0.999743 + . ID=CGI_10027447; scaffold1213 TRF Tandem_Repeat 293920 294692 766 + . . scaffold1213 GLEAN mRNA 300613 300661 0.991507 - . ID=CGI_10027448; scaffold1213 TRF Tandem_Repeat 300613 300661 62 + . . scaffold1213 GLEAN mRNA 317081 317109 0.991507 - . ID=CGI_10027448; scaffold1213 TRF Tandem_Repeat 317081 317109 58 + . . scaffold1213 GLEAN mRNA 321512 321537 0.991507 - . ID=CGI_10027448; scaffold1213 TRF Tandem_Repeat 321512 321537 52 + . . scaffold1213 GLEAN mRNA 357168 357221 0.805895 + . ID=CGI_10027449; scaffold1213 TRF Tandem_Repeat 357168 357221 55 + . . scaffold1213 GLEAN mRNA 358434 358847 0.805895 + . ID=CGI_10027449; scaffold1213 WUBlastX DNA_hAT-Tip100 358434 358847 52 + . . scaffold1213 GLEAN mRNA 359264 359563 0.805895 + . ID=CGI_10027449; scaffold1213 WUBlastX DNA_hAT-Tip100 359264 359563 81 + . . scaffold1213 GLEAN mRNA 359063 359497 0.805895 + . ID=CGI_10027449; scaffold1213 WUBlastX DNA_hAT-Tip100 359063 359497 68 + . . scaffold1213 GLEAN mRNA 359234 359497 0.805895 + . ID=CGI_10027449; scaffold1213 WUBlastX DNA_hAT-Tip100 359234 359497 113 + . . scaffold1213 GLEAN mRNA 359156 359491 0.805895 + . ID=CGI_10027449; scaffold1213 WUBlastX DNA_hAT-Tip100 359156 359491 111 + . . scaffold1213 GLEAN mRNA 358789 358974 0.805895 + . ID=CGI_10027449; scaffold1213 WUBlastX DNA_hAT-Tip100 358789 358974 30 + . . scaffold1213 GLEAN mRNA 363257 363291 0.805895 + . ID=CGI_10027449; scaffold1213 TRF Tandem_Repeat 363257 363291 61 + . . scaffold1213 GLEAN mRNA 390158 390189 0.805895 + . ID=CGI_10027449; scaffold1213 TRF Tandem_Repeat 390158 390189 64 + . . scaffold1213 GLEAN mRNA 386626 388137 0.805895 + . ID=CGI_10027449; scaffold1213 WUBlastX DNA_TcMar-Pogo 386626 388137 792 + . . scaffold1213 GLEAN mRNA 396458 396483 0.805895 + . ID=CGI_10027449; scaffold1213 TRF Tandem_Repeat 396458 396483 52 + . . scaffold1213 GLEAN mRNA 400246 401436 0.805895 + . ID=CGI_10027449; scaffold1213 TRF Tandem_Repeat 400246 401436 1346 + . . scaffold1213 GLEAN mRNA 402802 403761 0.805895 + . ID=CGI_10027449; scaffold1213 TRF Tandem_Repeat 402802 403761 1336 + . . scaffold1213 GLEAN mRNA 409673 410256 0.400191 - . ID=CGI_10027450; scaffold1213 TRF Tandem_Repeat 409673 410256 406 + . . scaffold1213 GLEAN mRNA 409675 410233 0.400191 - . ID=CGI_10027450; scaffold1213 TRF Tandem_Repeat 409675 410233 565 + . . scaffold1213 GLEAN mRNA 409675 410233 0.400191 - . ID=CGI_10027450; scaffold1213 TRF Tandem_Repeat 409675 410233 565 + . . scaffold1213 GLEAN mRNA 412325 413227 0.400191 - . ID=CGI_10027450; scaffold1213 TRF Tandem_Repeat 412325 413227 1108 + . . scaffold1213 GLEAN mRNA 415568 416358 0.400191 - . ID=CGI_10027450; scaffold1213 TRF Tandem_Repeat 415568 416358 938 + . . scaffold1213 GLEAN mRNA 420024 420203 0.400191 - . ID=CGI_10027450; scaffold1213 WUBlastX LINE_L1-Tx1 420024 420203 117 + . . scaffold1213 GLEAN mRNA 420221 420949 0.400191 - . ID=CGI_10027450; scaffold1213 WUBlastX LINE_L1-Tx1 420221 420949 207 + . . scaffold1213 GLEAN mRNA 414700 415176 0.400191 - . ID=CGI_10027450; scaffold1213 WUBlastX LINE_L1 414700 415176 92 - . . scaffold1213 GLEAN mRNA 419988 420200 0.400191 - . ID=CGI_10027450; scaffold1213 WUBlastX LINE_L1-Tx1 419988 420200 92 + . . scaffold1213 GLEAN mRNA 416599 417627 0.400191 - . ID=CGI_10027450; scaffold1213 WUBlastX LINE_L1-Tx1 416599 417627 343 - . . scaffold1213 GLEAN mRNA 417654 418061 0.400191 - . ID=CGI_10027450; scaffold1213 WUBlastX LINE_L1-Tx1 417654 418061 101 - . . scaffold1213 GLEAN mRNA 414832 415284 0.400191 - . ID=CGI_10027450; scaffold1213 WUBlastX LINE_L1-Tx1 414832 415284 170 - . . scaffold1213 GLEAN mRNA 414781 415176 0.400191 - . ID=CGI_10027450; scaffold1213 WUBlastX LINE_L1-Tx1 414781 415176 209 - . . scaffold1213 GLEAN mRNA 419237 419452 0.400191 - . ID=CGI_10027450; scaffold1213 WUBlastX LINE_L1-Tx1 419237 419452 83 - . . scaffold1213 GLEAN mRNA 419303 419503 0.400191 - . ID=CGI_10027450; scaffold1213 WUBlastX LINE_L1 419303 419503 76 - . . scaffold1213 GLEAN mRNA 420939 421763 0.400191 - . ID=CGI_10027450; scaffold1213 WUBlastX LINE_L1-Tx1 420939 421763 37 + . . scaffold1213 GLEAN mRNA 420212 420832 0.400191 - . ID=CGI_10027450; scaffold1213 WUBlastX LINE_L1-Tx1 420212 420832 211 + . . scaffold1213 GLEAN mRNA 437581 438201 0.982039 - . ID=CGI_10027451; scaffold1213 WUBlastX LINE_L1-Tx1 437581 438201 188 - . . scaffold1213 GLEAN mRNA 510923 510951 0.650969 - . ID=CGI_10027452; scaffold1213 TRF Tandem_Repeat 510923 510951 58 + . . scaffold1213 GLEAN mRNA 512170 512205 0.650969 - . ID=CGI_10027452; scaffold1213 TRF Tandem_Repeat 512170 512205 54 + . . scaffold1213 GLEAN mRNA 545652 546341 0.733271 - . ID=CGI_10027453; scaffold1213 WUBlastX LTR_Gypsy 545652 546341 104 - . . scaffold1213 GLEAN mRNA 554099 554386 0.798762 - . ID=CGI_10027454; scaffold1213 TRF Tandem_Repeat 554099 554386 576 + . . scaffold1213 GLEAN mRNA 568022 568064 0.798762 - . ID=CGI_10027454; scaffold1213 TRF Tandem_Repeat 568022 568064 86 + . . scaffold1213 GLEAN mRNA 641924 641977 0.510232 - . ID=CGI_10027457; scaffold1213 TRF Tandem_Repeat 641924 641977 58 + . . scaffold1213 GLEAN mRNA 669104 669283 0.331119 - . ID=CGI_10027461; scaffold1213 WUBlastX DNA_Transib 669104 669283 58 - . . scaffold1213 GLEAN mRNA 681261 681317 1 + . ID=CGI_10027462; scaffold1213 TRF Tandem_Repeat 681261 681317 114 + . . scaffold1213 GLEAN mRNA 697184 697236 1 + . ID=CGI_10027463; scaffold1213 TRF Tandem_Repeat 697184 697236 99 + . . scaffold1213 GLEAN mRNA 712847 712894 0.80624 - . ID=CGI_10027464; scaffold1213 TRF Tandem_Repeat 712847 712894 60 + . . scaffold1213 GLEAN mRNA 723337 723654 0.80624 - . ID=CGI_10027464; scaffold1213 TRF Tandem_Repeat 723337 723654 297 + . . scaffold1213 GLEAN mRNA 757339 757375 0.946675 + . ID=CGI_10027466; scaffold1213 TRF Tandem_Repeat 757339 757375 58 + . . scaffold1213 GLEAN mRNA 779329 779388 0.999915 + . ID=CGI_10027467; scaffold1213 TRF Tandem_Repeat 779329 779388 120 + . . scaffold1213 GLEAN mRNA 796594 796669 0.99952 + . ID=CGI_10027469; scaffold1213 TRF Tandem_Repeat 796594 796669 111 + . . scaffold1213 GLEAN mRNA 805744 805808 0.999828 + . ID=CGI_10027470; scaffold1213 TRF Tandem_Repeat 805744 805808 96 + . . scaffold1213 GLEAN mRNA 958332 958452 0.518885 - . ID=CGI_10027477; scaffold1213 TRF Tandem_Repeat 958332 958452 224 + . . scaffold1213 GLEAN mRNA 958558 958696 0.518885 - . ID=CGI_10027477; scaffold1213 TRF Tandem_Repeat 958558 958696 113 + . . scaffold1213 GLEAN mRNA 983523 983585 0.766143 + . ID=CGI_10027478; scaffold1213 TRF Tandem_Repeat 983523 983585 126 + . . scaffold1213 GLEAN mRNA 986507 986568 0.766143 + . ID=CGI_10027478; scaffold1213 TRF Tandem_Repeat 986507 986568 124 + . . scaffold1213 GLEAN mRNA 1091570 1091656 0.544852 + . ID=CGI_10027484; scaffold1213 TRF Tandem_Repeat 1091570 1091656 142 + . . scaffold1213 GLEAN mRNA 1091971 1092020 0.544852 + . ID=CGI_10027484; scaffold1213 TRF Tandem_Repeat 1091971 1092020 100 + . . scaffold1213 GLEAN mRNA 1118465 1118548 0.247457 - . ID=CGI_10027485; scaffold1213 TRF Tandem_Repeat 1118465 1118548 77 + . . scaffold1213 GLEAN mRNA 1118481 1118545 0.247457 - . ID=CGI_10027485; scaffold1213 TRF Tandem_Repeat 1118481 1118545 96 + . . scaffold1213 GLEAN mRNA 1118465 1118548 0.247457 - . ID=CGI_10027485; scaffold1213 TRF Tandem_Repeat 1118465 1118548 100 + . . scaffold1213 GLEAN mRNA 1120562 1120611 0.247457 - . ID=CGI_10027485; scaffold1213 TRF Tandem_Repeat 1120562 1120611 91 + . . scaffold1213 GLEAN mRNA 1130053 1130132 0.247457 - . ID=CGI_10027485; scaffold1213 TRF Tandem_Repeat 1130053 1130132 63 + . . scaffold1213 GLEAN mRNA 1134995 1135642 0.247457 - . ID=CGI_10027485; scaffold1213 WUBlastX LTR_Ngaro 1134995 1135642 115 - . . scaffold1213 GLEAN mRNA 1132330 1133034 0.247457 - . ID=CGI_10027485; scaffold1213 WUBlastX LTR_Ngaro 1132330 1133034 223 - . . scaffold1213 GLEAN mRNA 1133426 1133851 0.247457 - . ID=CGI_10027485; scaffold1213 WUBlastX LTR_Ngaro 1133426 1133851 204 - . . scaffold1213 GLEAN mRNA 1133881 1134120 0.247457 - . ID=CGI_10027485; scaffold1213 WUBlastX LTR_Ngaro 1133881 1134120 140 - . . scaffold1213 GLEAN mRNA 1134060 1134962 0.247457 - . ID=CGI_10027485; scaffold1213 WUBlastX LTR_Ngaro 1134060 1134962 496 - . . scaffold1213 GLEAN mRNA 1135001 1135837 0.247457 - . ID=CGI_10027485; scaffold1213 WUBlastX LTR_Ngaro 1135001 1135837 111 - . . scaffold1213 GLEAN mRNA 1212643 1212700 0.999611 + . ID=CGI_10027487; scaffold1213 TRF Tandem_Repeat 1212643 1212700 116 + . . scaffold1213 GLEAN mRNA 1213646 1214063 0.999611 + . ID=CGI_10027487; scaffold1213 TRF Tandem_Repeat 1213646 1214063 611 + . . scaffold1213 GLEAN mRNA 1279677 1279713 0.999222 - . ID=CGI_10027493; scaffold1213 TRF Tandem_Repeat 1279677 1279713 74 + . . scaffold1213 GLEAN mRNA 1364479 1364931 1 - . ID=CGI_10027494; scaffold1213 TRF Tandem_Repeat 1364479 1364931 552 + . . scaffold501 GLEAN mRNA 114027 114060 1 - . ID=CGI_10027499; scaffold501 TRF Tandem_Repeat 114027 114060 68 + . . scaffold501 GLEAN mRNA 151286 151338 0.992407 + . ID=CGI_10027501; scaffold501 TRF Tandem_Repeat 151286 151338 106 + . . scaffold501 GLEAN mRNA 169921 170355 0.79399 - . ID=CGI_10027502; scaffold501 WUBlastX LTR_Gypsy 169921 170355 21 - . . scaffold501 GLEAN mRNA 258200 258250 0.800961 + . ID=CGI_10027510; scaffold501 TRF Tandem_Repeat 258200 258250 57 + . . scaffold501 GLEAN mRNA 265017 265041 0.800961 + . ID=CGI_10027510; scaffold501 TRF Tandem_Repeat 265017 265041 50 + . . scaffold501 GLEAN mRNA 267968 268126 0.999995 + . ID=CGI_10027511; scaffold501 WUBlastX LINE_L1-Tx1 267425 268126 73 + . . scaffold501 GLEAN mRNA 267968 268126 0.999995 + . ID=CGI_10027511; scaffold501 WUBlastX LINE_L2 267560 268126 87 + . . scaffold501 GLEAN mRNA 267968 268228 0.999995 + . ID=CGI_10027511; scaffold501 WUBlastX LINE_L1 267398 268228 24 + . . scaffold501 GLEAN mRNA 381630 381668 0.99992 - . ID=CGI_10027519; scaffold501 TRF Tandem_Repeat 381630 381668 78 + . . scaffold501 GLEAN mRNA 411725 411790 0.888354 - . ID=CGI_10027521; scaffold501 TRF Tandem_Repeat 411725 411790 125 + . . scaffold501 GLEAN mRNA 415259 415317 0.888354 - . ID=CGI_10027521; scaffold501 TRF Tandem_Repeat 415259 415317 118 + . . scaffold501 GLEAN mRNA 427830 427858 0.888354 - . ID=CGI_10027521; scaffold501 TRF Tandem_Repeat 427830 427858 51 + . . scaffold501 GLEAN mRNA 575934 576013 0.882009 - . ID=CGI_10027527; scaffold501 TRF Tandem_Repeat 575934 576013 61 + . . scaffold501 GLEAN mRNA 579220 579473 0.882009 - . ID=CGI_10027527; scaffold501 TRF Tandem_Repeat 579220 579473 402 + . . scaffold501 GLEAN mRNA 639639 640306 0.994416 + . ID=CGI_10027528; scaffold501 TRF Tandem_Repeat 639639 640306 1158 + . . scaffold501 GLEAN mRNA 651700 651769 0.994416 + . ID=CGI_10027528; scaffold501 TRF Tandem_Repeat 651700 651769 131 + . . scaffold501 GLEAN mRNA 658380 658431 0.994416 + . ID=CGI_10027528; scaffold501 TRF Tandem_Repeat 658380 658431 95 + . . scaffold501 GLEAN mRNA 661684 661742 0.994416 + . ID=CGI_10027528; scaffold501 TRF Tandem_Repeat 661684 661742 102 + . . scaffold501 GLEAN mRNA 692296 692353 0.748134 - . ID=CGI_10027530; scaffold501 TRF Tandem_Repeat 692296 692353 73 + . . scaffold501 GLEAN mRNA 711137 711942 0.748134 - . ID=CGI_10027530; scaffold501 TRF Tandem_Repeat 711137 711942 1207 + . . scaffold501 GLEAN mRNA 712147 712191 0.748134 - . ID=CGI_10027530; scaffold501 TRF Tandem_Repeat 712147 712191 72 + . . scaffold501 GLEAN mRNA 721086 721134 0.748134 - . ID=CGI_10027530; scaffold501 TRF Tandem_Repeat 721086 721134 98 + . . scaffold501 GLEAN mRNA 722665 722692 0.748134 - . ID=CGI_10027530; scaffold501 TRF Tandem_Repeat 722665 722692 56 + . . scaffold501 GLEAN mRNA 735874 735916 0.748134 - . ID=CGI_10027530; scaffold501 TRF Tandem_Repeat 735874 735916 86 + . . scaffold501 GLEAN mRNA 724428 726179 0.748134 - . ID=CGI_10027530; scaffold501 WUBlastX LTR_Gypsy-Cigr 724428 726179 868 + . . scaffold501 GLEAN mRNA 724362 724787 0.748134 - . ID=CGI_10027530; scaffold501 WUBlastX LTR_Gypsy 724362 724787 47 + . . scaffold501 GLEAN mRNA 725199 726368 0.748134 - . ID=CGI_10027530; scaffold501 WUBlastX LTR_Gypsy 725199 726368 463 + . . scaffold501 GLEAN mRNA 739754 740713 0.748134 - . ID=CGI_10027530; scaffold501 TRF Tandem_Repeat 739754 740713 1423 + . . scaffold501 GLEAN mRNA 740744 740799 0.748134 - . ID=CGI_10027530; scaffold501 TRF Tandem_Repeat 740744 740799 76 + . . scaffold501 GLEAN mRNA 794846 795074 0.813868 + . ID=CGI_10027531; scaffold501 TRF Tandem_Repeat 794846 795074 347 + . . scaffold501 GLEAN mRNA 797886 797981 0.813868 + . ID=CGI_10027531; scaffold501 TRF Tandem_Repeat 797886 797981 147 + . . scaffold501 GLEAN mRNA 790934 792328 0.813868 + . ID=CGI_10027531; scaffold501 WUBlastX LINE_RTE-X 790934 792328 607 - . . scaffold501 GLEAN mRNA 792179 792391 0.813868 + . ID=CGI_10027531; scaffold501 WUBlastX LINE_CR1 792179 792391 29 - . . scaffold501 GLEAN mRNA 805452 805611 0.813868 + . ID=CGI_10027531; scaffold501 TRF Tandem_Repeat 805452 805611 212 + . . scaffold501 GLEAN mRNA 866251 867348 0.966154 + . ID=CGI_10027533; scaffold501 WUBlastX LINE_RTE-X 866251 867348 350 + . . scaffold501 GLEAN mRNA 928098 928394 0.733495 - . ID=CGI_10027537; scaffold501 WUBlastX LTR_Ngaro 928098 928394 96 - . . scaffold501 GLEAN mRNA 972689 972746 0.995685 + . ID=CGI_10027539; scaffold501 TRF Tandem_Repeat 972689 972746 57 + . . scaffold501 GLEAN mRNA 1064730 1064948 1 + . ID=CGI_10027541; scaffold501 TRF Tandem_Repeat 1064730 1064948 258 + . . scaffold501 GLEAN mRNA 1064681 1065092 1 + . ID=CGI_10027541; scaffold501 TRF Tandem_Repeat 1064681 1065092 401 + . . scaffold501 GLEAN mRNA 1064681 1065092 1 + . ID=CGI_10027541; scaffold501 TRF Tandem_Repeat 1064681 1065092 429 + . . scaffold501 GLEAN mRNA 1064690 1065092 1 + . ID=CGI_10027541; scaffold501 TRF Tandem_Repeat 1064690 1065092 425 + . . scaffold501 GLEAN mRNA 1137767 1137822 0.395005 - . ID=CGI_10027545; scaffold501 TRF Tandem_Repeat 1137767 1137822 76 + . . scaffold501 GLEAN mRNA 1140859 1140891 0.395005 - . ID=CGI_10027545; scaffold501 TRF Tandem_Repeat 1140859 1140891 66 + . . scaffold501 GLEAN mRNA 1136669 1137073 0.395005 - . ID=CGI_10027545; scaffold501 WUBlastX LINE_Penelope 1136669 1137073 32 + . . scaffold501 GLEAN mRNA 1136747 1137046 0.395005 - . ID=CGI_10027545; scaffold501 WUBlastX LINE_Penelope 1136747 1137046 38 + . . scaffold501 GLEAN mRNA 1137013 1137153 0.395005 - . ID=CGI_10027545; scaffold501 WUBlastX LINE_Penelope 1137013 1137153 35 + . . scaffold501 GLEAN mRNA 1165682 1166803 0.395005 - . ID=CGI_10027545; scaffold501 TRF Tandem_Repeat 1165682 1166803 1456 + . . scaffold501 GLEAN mRNA 1172796 1172838 0.395005 - . ID=CGI_10027545; scaffold501 TRF Tandem_Repeat 1172796 1172838 86 + . . scaffold501 GLEAN mRNA 1174967 1175678 0.395005 - . ID=CGI_10027545; scaffold501 TRF Tandem_Repeat 1174967 1175678 940 + . . scaffold501 GLEAN mRNA 1174990 1175678 0.395005 - . ID=CGI_10027545; scaffold501 TRF Tandem_Repeat 1174990 1175678 908 + . . scaffold501 GLEAN mRNA 1185847 1185934 0.395005 - . ID=CGI_10027545; scaffold501 TRF Tandem_Repeat 1185847 1185934 122 + . . scaffold501 GLEAN mRNA 1211117 1211278 0.789617 + . ID=CGI_10027546; scaffold501 WUBlastX LINE_CR1-L2 1211117 1211278 45 + . . scaffold501 GLEAN mRNA 1210962 1211111 0.789617 + . ID=CGI_10027546; scaffold501 WUBlastX LINE_L2 1210962 1211111 86 + . . scaffold591 GLEAN mRNA 102080 102166 0.996819 - . ID=CGI_10027554; scaffold591 WUBlastX LTR_Gypsy 102080 102481 48 - . . scaffold591 GLEAN mRNA 101759 102166 0.996819 - . ID=CGI_10027554; scaffold591 WUBlastX LTR_Pao 101759 102361 55 - . . scaffold591 GLEAN mRNA 105123 105187 0.352187 + . ID=CGI_10027555; scaffold591 TRF Tandem_Repeat 105123 105187 130 + . . scaffold591 GLEAN mRNA 106139 106187 0.352187 + . ID=CGI_10027555; scaffold591 TRF Tandem_Repeat 106139 106187 82 + . . scaffold591 GLEAN mRNA 111261 111357 0.352187 + . ID=CGI_10027555; scaffold591 TRF Tandem_Repeat 111261 111357 117 + . . scaffold591 GLEAN mRNA 111530 111567 0.352187 + . ID=CGI_10027555; scaffold591 TRF Tandem_Repeat 111530 111567 58 + . . scaffold591 GLEAN mRNA 102447 102481 0.352187 + . ID=CGI_10027555; scaffold591 WUBlastX LTR_Gypsy 102080 102481 48 - . . scaffold591 GLEAN mRNA 122465 122538 0.972887 + . ID=CGI_10027557; scaffold591 TRF Tandem_Repeat 122465 122538 85 + . . scaffold591 GLEAN mRNA 122468 122533 0.972887 + . ID=CGI_10027557; scaffold591 TRF Tandem_Repeat 122468 122533 105 + . . scaffold591 GLEAN mRNA 123034 123074 0.972887 + . ID=CGI_10027557; scaffold591 TRF Tandem_Repeat 123034 123074 82 + . . scaffold591 GLEAN mRNA 125478 125544 0.972887 + . ID=CGI_10027557; scaffold591 TRF Tandem_Repeat 125478 125544 89 + . . scaffold591 GLEAN mRNA 224433 224468 0.561606 - . ID=CGI_10027559; scaffold591 WUBlastX LTR_Gypsy 224433 225053 88 - . . scaffold591 GLEAN mRNA 224316 224468 0.561606 - . ID=CGI_10027559; scaffold591 WUBlastX LTR_Gypsy 224316 224933 38 - . . scaffold591 GLEAN mRNA 233674 233710 0.993361 - . ID=CGI_10027560; scaffold591 TRF Tandem_Repeat 233674 233710 74 + . . scaffold591 GLEAN mRNA 285691 285720 0.460588 - . ID=CGI_10027562; scaffold591 TRF Tandem_Repeat 285691 285720 60 + . . scaffold591 GLEAN mRNA 287221 287718 0.460588 - . ID=CGI_10027562; scaffold591 WUBlastX DNA_TcMar-Tc1 287221 287718 151 + . . scaffold591 GLEAN mRNA 287726 288232 0.460588 - . ID=CGI_10027562; scaffold591 WUBlastX DNA_TcMar-Tc1 287726 288232 340 + . . scaffold591 GLEAN mRNA 329355 330556 0.907463 - . ID=CGI_10027564; scaffold591 TRF Tandem_Repeat 329355 330556 1668 + . . scaffold591 GLEAN mRNA 374812 375012 0.988733 - . ID=CGI_10027565; scaffold591 WUBlastX DNA_MuDR 374806 375132 70 - . . scaffold591 GLEAN mRNA 374845 375012 0.988733 - . ID=CGI_10027565; scaffold591 WUBlastX DNA_MuDR 374845 375240 42 - . . scaffold591 GLEAN mRNA 506646 506678 0.696977 - . ID=CGI_10027572; scaffold591 TRF Tandem_Repeat 506646 506678 66 + . . scaffold591 GLEAN mRNA 515934 516068 0.696977 - . ID=CGI_10027572; scaffold591 TRF Tandem_Repeat 515934 516068 169 + . . scaffold591 GLEAN mRNA 517611 517635 0.696977 - . ID=CGI_10027572; scaffold591 TRF Tandem_Repeat 517611 517635 50 + . . scaffold591 GLEAN mRNA 516313 516534 0.696977 - . ID=CGI_10027572; scaffold591 WUBlastX LINE_L1 516313 516534 40 + . . scaffold591 GLEAN mRNA 516531 516875 0.696977 - . ID=CGI_10027572; scaffold591 WUBlastX LINE_L1 516531 516875 75 + . . scaffold591 GLEAN mRNA 516618 516878 0.696977 - . ID=CGI_10027572; scaffold591 WUBlastX LINE_L1 516618 516878 85 + . . scaffold591 GLEAN mRNA 550689 550889 0.638045 + . ID=CGI_10027574; scaffold591 WUBlastX LTR_Gypsy 550689 551312 86 + . . scaffold591 GLEAN mRNA 550818 550889 0.638045 + . ID=CGI_10027574; scaffold591 WUBlastX LTR_ERVK 550818 551312 106 + . . scaffold591 GLEAN mRNA 586684 586839 0.997895 + . ID=CGI_10027576; scaffold591 WUBlastX DNA_Harbinger 586684 586839 30 + . . scaffold591 GLEAN mRNA 590708 590745 0.997895 + . ID=CGI_10027576; scaffold591 TRF Tandem_Repeat 590708 590745 76 + . . scaffold591 GLEAN mRNA 605292 605340 0.997895 + . ID=CGI_10027576; scaffold591 TRF Tandem_Repeat 605292 605340 98 + . . scaffold591 GLEAN mRNA 602730 603485 0.997895 + . ID=CGI_10027576; scaffold591 WUBlastX LTR_Ngaro 602730 603485 120 - . . scaffold591 GLEAN mRNA 600080 600889 0.997895 + . ID=CGI_10027576; scaffold591 WUBlastX LTR_Ngaro 600080 600889 307 - . . scaffold591 GLEAN mRNA 601091 602518 0.997895 + . ID=CGI_10027576; scaffold591 WUBlastX LTR_Ngaro 601091 602518 831 - . . scaffold591 GLEAN mRNA 602805 603299 0.997895 + . ID=CGI_10027576; scaffold591 WUBlastX LTR_Ngaro 602805 603299 144 - . . scaffold591 GLEAN mRNA 600080 601042 0.997895 + . ID=CGI_10027576; scaffold591 WUBlastX LTR_Ngaro 600080 601042 260 - . . scaffold591 GLEAN mRNA 602580 603263 0.997895 + . ID=CGI_10027576; scaffold591 WUBlastX LTR_Ngaro 602580 603263 20 - . . scaffold591 GLEAN mRNA 600996 601085 0.997895 + . ID=CGI_10027576; scaffold591 WUBlastX LTR_Ngaro 600996 601085 37 - . . scaffold591 GLEAN mRNA 651556 651600 0.892912 + . ID=CGI_10027579; scaffold591 TRF Tandem_Repeat 651556 651600 90 + . . scaffold591 GLEAN mRNA 651872 652374 0.892912 + . ID=CGI_10027579; scaffold591 TRF Tandem_Repeat 651872 652374 927 + . . scaffold591 GLEAN mRNA 652694 652746 0.892912 + . ID=CGI_10027579; scaffold591 TRF Tandem_Repeat 652694 652746 70 + . . scaffold591 GLEAN mRNA 699101 699176 0.892912 + . ID=CGI_10027579; scaffold591 TRF Tandem_Repeat 699101 699176 62 + . . scaffold591 GLEAN mRNA 700496 700616 0.892912 + . ID=CGI_10027579; scaffold591 TRF Tandem_Repeat 700496 700616 74 + . . scaffold591 GLEAN mRNA 700504 700740 0.892912 + . ID=CGI_10027579; scaffold591 TRF Tandem_Repeat 700504 700740 124 + . . scaffold591 GLEAN mRNA 700916 700998 0.892912 + . ID=CGI_10027579; scaffold591 TRF Tandem_Repeat 700916 700998 68 + . . scaffold591 GLEAN mRNA 705807 705898 0.892912 + . ID=CGI_10027579; scaffold591 TRF Tandem_Repeat 705807 705898 78 + . . scaffold591 GLEAN mRNA 733170 733335 0.987378 - . ID=CGI_10027581; scaffold591 TRF Tandem_Repeat 733170 733335 181 + . . scaffold591 GLEAN mRNA 733218 733372 0.987378 - . ID=CGI_10027581; scaffold591 TRF Tandem_Repeat 733218 733372 163 + . . scaffold591 GLEAN mRNA 736671 736716 0.987378 - . ID=CGI_10027581; scaffold591 TRF Tandem_Repeat 736671 736716 92 + . . scaffold591 GLEAN mRNA 736960 737011 0.987378 - . ID=CGI_10027581; scaffold591 TRF Tandem_Repeat 736960 737011 50 + . . scaffold591 GLEAN mRNA 727314 727454 0.987378 - . ID=CGI_10027581; scaffold591 WUBlastX DNA_PiggyBac 727314 727454 50 + . . scaffold591 GLEAN mRNA 725353 725418 0.987378 - . ID=CGI_10027581; scaffold591 WUBlastX DNA_PiggyBac 725353 725418 27 + . . scaffold591 GLEAN mRNA 726768 726860 0.987378 - . ID=CGI_10027581; scaffold591 WUBlastX DNA_PiggyBac 726768 726860 35 + . . scaffold591 GLEAN mRNA 726146 726229 0.987378 - . ID=CGI_10027581; scaffold591 WUBlastX DNA_PiggyBac 726146 726229 58 + . . scaffold591 GLEAN mRNA 726146 726244 0.987378 - . ID=CGI_10027581; scaffold591 WUBlastX DNA_PiggyBac 726146 726244 45 + . . scaffold591 GLEAN mRNA 726237 726464 0.987378 - . ID=CGI_10027581; scaffold591 WUBlastX DNA_PiggyBac 726237 726464 35 + . . scaffold591 GLEAN mRNA 738370 738403 0.987378 - . ID=CGI_10027581; scaffold591 TRF Tandem_Repeat 738370 738403 68 + . . scaffold591 GLEAN mRNA 745991 746040 0.987378 - . ID=CGI_10027581; scaffold591 TRF Tandem_Repeat 745991 746040 91 + . . scaffold591 GLEAN mRNA 768036 768290 0.987378 - . ID=CGI_10027581; scaffold591 TRF Tandem_Repeat 768036 768290 312 + . . scaffold591 GLEAN mRNA 770461 770927 0.987378 - . ID=CGI_10027581; scaffold591 TRF Tandem_Repeat 770461 770927 627 + . . scaffold591 GLEAN mRNA 770462 770927 0.987378 - . ID=CGI_10027581; scaffold591 TRF Tandem_Repeat 770462 770927 576 + . . scaffold591 GLEAN mRNA 792707 792743 0.987378 - . ID=CGI_10027581; scaffold591 TRF Tandem_Repeat 792707 792743 74 + . . scaffold591 GLEAN mRNA 797334 797379 0.987378 - . ID=CGI_10027581; scaffold591 TRF Tandem_Repeat 797334 797379 76 + . . scaffold591 GLEAN mRNA 800606 800650 0.987378 - . ID=CGI_10027581; scaffold591 TRF Tandem_Repeat 800606 800650 90 + . . scaffold591 GLEAN mRNA 805910 805966 0.987378 - . ID=CGI_10027581; scaffold591 TRF Tandem_Repeat 805910 805966 105 + . . scaffold591 GLEAN mRNA 813371 813436 1 - . ID=CGI_10027582; scaffold591 TRF Tandem_Repeat 813371 813436 114 + . . scaffold591 GLEAN mRNA 813885 813921 1 - . ID=CGI_10027582; scaffold591 TRF Tandem_Repeat 813885 813921 74 + . . scaffold591 GLEAN mRNA 813919 813946 1 - . ID=CGI_10027582; scaffold591 TRF Tandem_Repeat 813919 813946 56 + . . scaffold591 GLEAN mRNA 813885 813921 0.999675 + . ID=CGI_10027583; scaffold591 TRF Tandem_Repeat 813885 813921 74 + . . scaffold591 GLEAN mRNA 813919 813946 0.999675 + . ID=CGI_10027583; scaffold591 TRF Tandem_Repeat 813919 813946 56 + . . scaffold591 GLEAN mRNA 843203 843379 0.991226 + . ID=CGI_10027585; scaffold591 TRF Tandem_Repeat 843203 843379 142 + . . scaffold591 GLEAN mRNA 882526 882564 0.608402 + . ID=CGI_10027586; scaffold591 TRF Tandem_Repeat 882526 882564 78 + . . scaffold591 GLEAN mRNA 889187 889250 0.608402 + . ID=CGI_10027586; scaffold591 TRF Tandem_Repeat 889187 889250 128 + . . scaffold591 GLEAN mRNA 922909 924234 0.984825 + . ID=CGI_10027590; scaffold591 TRF Tandem_Repeat 922909 924234 1404 + . . scaffold591 GLEAN mRNA 929973 930069 0.984825 + . ID=CGI_10027590; scaffold591 TRF Tandem_Repeat 929973 930069 79 + . . scaffold591 GLEAN mRNA 1020659 1020744 0.761169 + . ID=CGI_10027596; scaffold591 TRF Tandem_Repeat 1020659 1020744 165 + . . scaffold591 GLEAN mRNA 1079117 1079320 0.732046 + . ID=CGI_10027597; scaffold591 WUBlastX DNA_TcMar-Tc2 1078961 1079320 97 + . . scaffold591 GLEAN mRNA 1079117 1079140 0.732046 + . ID=CGI_10027597; scaffold591 WUBlastX DNA_TcMar-Tc2 1078928 1079140 55 + . . scaffold591 GLEAN mRNA 1112954 1112992 0.988488 - . ID=CGI_10027598; scaffold591 TRF Tandem_Repeat 1112954 1112992 78 + . . scaffold591 GLEAN mRNA 1125533 1125605 0.811719 - . ID=CGI_10027599; scaffold591 TRF Tandem_Repeat 1125533 1125605 146 + . . scaffold591 GLEAN mRNA 1139738 1140166 0.99549 + . ID=CGI_10027600; scaffold591 TRF Tandem_Repeat 1139738 1140166 675 + . . scaffold591 GLEAN mRNA 1141288 1141335 0.99549 + . ID=CGI_10027600; scaffold591 TRF Tandem_Repeat 1141288 1141335 80 + . . scaffold591 GLEAN mRNA 1147271 1147698 0.697669 + . ID=CGI_10027601; scaffold591 TRF Tandem_Repeat 1147271 1147698 283 + . . scaffold591 GLEAN mRNA 1148623 1148706 0.697669 + . ID=CGI_10027601; scaffold591 TRF Tandem_Repeat 1148623 1148706 71 + . . scaffold591 GLEAN mRNA 1148623 1148769 0.697669 + . ID=CGI_10027601; scaffold591 TRF Tandem_Repeat 1148623 1148769 114 + . . scaffold591 GLEAN mRNA 1150300 1150355 0.697669 + . ID=CGI_10027601; scaffold591 TRF Tandem_Repeat 1150300 1150355 112 + . . scaffold591 GLEAN mRNA 1165036 1165388 0.838965 + . ID=CGI_10027603; scaffold591 TRF Tandem_Repeat 1165036 1165388 609 + . . scaffold591 GLEAN mRNA 1178177 1178223 1 - . ID=CGI_10027605; scaffold591 TRF Tandem_Repeat 1178177 1178223 94 + . . scaffold591 GLEAN mRNA 1189850 1189917 0.999847 - . ID=CGI_10027607; scaffold591 TRF Tandem_Repeat 1189850 1189917 136 + . . scaffold591 GLEAN mRNA 1275932 1276095 0.999861 - . ID=CGI_10027615; scaffold591 TRF Tandem_Repeat 1275932 1276095 175 + . . scaffold591 GLEAN mRNA 1280476 1280507 0.999861 - . ID=CGI_10027615; scaffold591 TRF Tandem_Repeat 1280476 1280507 64 + . . scaffold591 GLEAN mRNA 1289822 1290127 1 - . ID=CGI_10027616; scaffold591 WUBlastX LINE_RTE-X 1289822 1290127 53 - . . scaffold591 GLEAN mRNA 1350485 1350529 0.999322 - . ID=CGI_10027619; scaffold591 TRF Tandem_Repeat 1350485 1350529 90 + . . scaffold591 GLEAN mRNA 1363680 1363796 0.999661 - . ID=CGI_10027620; scaffold591 TRF Tandem_Repeat 1363680 1363796 101 + . . scaffold591 GLEAN mRNA 1364963 1365353 0.999661 - . ID=CGI_10027620; scaffold591 TRF Tandem_Repeat 1364963 1365353 223 + . . scaffold591 GLEAN mRNA 1365146 1365432 0.999661 - . ID=CGI_10027620; scaffold591 TRF Tandem_Repeat 1365146 1365432 103 + . . scaffold591 GLEAN mRNA 1390876 1391249 0.973404 - . ID=CGI_10027625; scaffold591 TRF Tandem_Repeat 1390876 1391249 336 + . . scaffold591 GLEAN mRNA 1406702 1406845 0.968913 + . ID=CGI_10027626; scaffold591 WUBlastX LINE_RTE-X 1406702 1406845 32 + . . scaffold591 GLEAN mRNA 1410154 1410218 0.968913 + . ID=CGI_10027626; scaffold591 TRF Tandem_Repeat 1410154 1410218 112 + . . scaffold962 GLEAN mRNA 17614 17832 0.999586 + . ID=CGI_10027631; scaffold962 WUBlastX LTR_ERVL 17614 17850 59 + . . scaffold962 GLEAN mRNA 17446 17592 0.999586 + . ID=CGI_10027631; scaffold962 WUBlastX LTR_Gypsy 17440 17592 75 + . . scaffold962 GLEAN mRNA 156445 156512 0.9993 - . ID=CGI_10027635; scaffold962 TRF Tandem_Repeat 156445 156512 118 + . . scaffold962 GLEAN mRNA 157174 157207 0.9993 - . ID=CGI_10027635; scaffold962 TRF Tandem_Repeat 157174 157207 50 + . . scaffold962 GLEAN mRNA 227716 227771 0.911294 - . ID=CGI_10027639; scaffold962 TRF Tandem_Repeat 227716 227771 112 + . . scaffold962 GLEAN mRNA 262992 263419 0.577945 - . ID=CGI_10027640; scaffold962 TRF Tandem_Repeat 262992 263419 359 + . . scaffold962 GLEAN mRNA 262992 263362 0.577945 - . ID=CGI_10027640; scaffold962 TRF Tandem_Repeat 262992 263362 478 + . . scaffold962 GLEAN mRNA 262992 263362 0.577945 - . ID=CGI_10027640; scaffold962 TRF Tandem_Repeat 262992 263362 478 + . . scaffold962 GLEAN mRNA 271952 272043 0.577945 - . ID=CGI_10027640; scaffold962 TRF Tandem_Repeat 271952 272043 157 + . . scaffold962 GLEAN mRNA 293743 293792 0.64491 + . ID=CGI_10027641; scaffold962 TRF Tandem_Repeat 293743 293792 91 + . . scaffold962 GLEAN mRNA 328665 330349 0.557414 - . ID=CGI_10027642; scaffold962 TRF Tandem_Repeat 328665 330349 2138 + . . scaffold962 GLEAN mRNA 335509 335684 0.557414 - . ID=CGI_10027642; scaffold962 TRF Tandem_Repeat 335509 335684 145 + . . scaffold962 GLEAN mRNA 350341 350520 0.909734 - . ID=CGI_10027643; scaffold962 WUBlastX LTR_Pao 350341 350520 31 - . . scaffold962 GLEAN mRNA 350641 350871 0.909734 - . ID=CGI_10027643; scaffold962 WUBlastX LTR_Pao 350641 350871 37 - . . scaffold962 GLEAN mRNA 371411 371472 0.374498 - . ID=CGI_10027644; scaffold962 TRF Tandem_Repeat 371411 371472 124 + . . scaffold962 GLEAN mRNA 372563 372608 0.374498 - . ID=CGI_10027644; scaffold962 TRF Tandem_Repeat 372563 372608 92 + . . scaffold962 GLEAN mRNA 366438 366740 0.374498 - . ID=CGI_10027644; scaffold962 WUBlastX DNA_NOF 366438 366740 45 - . . scaffold962 GLEAN mRNA 388140 388286 0.492706 - . ID=CGI_10027645; scaffold962 WUBlastX LINE_L1 388140 388853 59 - . . scaffold962 GLEAN mRNA 388389 388649 0.981828 - . ID=CGI_10027646; scaffold962 WUBlastX LINE_L1 388140 388853 59 - . . scaffold962 GLEAN mRNA 454256 454294 0.999508 + . ID=CGI_10027649; scaffold962 TRF Tandem_Repeat 454256 454294 78 + . . scaffold962 GLEAN mRNA 456241 456374 0.999508 + . ID=CGI_10027649; scaffold962 TRF Tandem_Repeat 456241 456374 153 + . . scaffold962 GLEAN mRNA 458496 458588 0.999508 + . ID=CGI_10027649; scaffold962 TRF Tandem_Repeat 458496 458588 82 + . . scaffold962 GLEAN mRNA 472579 472616 0.999676 + . ID=CGI_10027650; scaffold962 TRF Tandem_Repeat 472579 472616 67 + . . scaffold962 GLEAN mRNA 472821 473743 0.999676 + . ID=CGI_10027650; scaffold962 TRF Tandem_Repeat 472821 473743 1429 + . . scaffold962 GLEAN mRNA 484686 484727 0.848199 - . ID=CGI_10027652; scaffold962 TRF Tandem_Repeat 484686 484727 50 + . . scaffold962 GLEAN mRNA 486843 486899 0.848199 - . ID=CGI_10027652; scaffold962 TRF Tandem_Repeat 486843 486899 114 + . . scaffold962 GLEAN mRNA 486899 486952 0.848199 - . ID=CGI_10027652; scaffold962 TRF Tandem_Repeat 486899 486952 90 + . . scaffold962 GLEAN mRNA 494392 494509 0.643152 - . ID=CGI_10027653; scaffold962 TRF Tandem_Repeat 494392 494509 227 + . . scaffold962 GLEAN mRNA 512867 512901 0.499274 + . ID=CGI_10027655; scaffold962 TRF Tandem_Repeat 512867 512901 52 + . . scaffold962 GLEAN mRNA 607468 607653 0.632124 - . ID=CGI_10027657; scaffold962 TRF Tandem_Repeat 607468 607653 205 + . . scaffold962 GLEAN mRNA 647582 647629 0.999949 + . ID=CGI_10027660; scaffold962 TRF Tandem_Repeat 647582 647629 87 + . . scaffold962 GLEAN mRNA 659770 659825 0.999949 + . ID=CGI_10027660; scaffold962 TRF Tandem_Repeat 659770 659825 112 + . . scaffold962 GLEAN mRNA 679161 679219 0.999949 + . ID=CGI_10027660; scaffold962 TRF Tandem_Repeat 679161 679219 109 + . . scaffold962 GLEAN mRNA 712027 712056 1 - . ID=CGI_10027662; scaffold962 TRF Tandem_Repeat 712027 712056 60 + . . scaffold962 GLEAN mRNA 748152 748316 0.279681 - . ID=CGI_10027664; scaffold962 WUBlastX LINE_CR1-L2 748152 748316 24 + . . scaffold962 GLEAN mRNA 747198 747368 0.279681 - . ID=CGI_10027664; scaffold962 WUBlastX LINE_L2 747198 747368 113 + . . scaffold962 GLEAN mRNA 747492 747641 0.279681 - . ID=CGI_10027664; scaffold962 WUBlastX LINE_L2 747492 747641 75 + . . scaffold962 GLEAN mRNA 747581 748102 0.279681 - . ID=CGI_10027664; scaffold962 WUBlastX LINE_CR1-L2 747581 748102 51 + . . scaffold962 GLEAN mRNA 747680 747811 0.279681 - . ID=CGI_10027664; scaffold962 WUBlastX LINE_CR1 747680 747811 78 + . . scaffold962 GLEAN mRNA 747081 747368 0.279681 - . ID=CGI_10027664; scaffold962 WUBlastX LINE_CR1-L2 747081 747368 64 + . . scaffold962 GLEAN mRNA 747331 747498 0.279681 - . ID=CGI_10027664; scaffold962 WUBlastX LINE_L2 747331 747498 56 + . . scaffold962 GLEAN mRNA 747656 747811 0.279681 - . ID=CGI_10027664; scaffold962 WUBlastX LINE_CR1-L2 747656 747811 55 + . . scaffold962 GLEAN mRNA 807046 807128 0.754198 - . ID=CGI_10027665; scaffold962 TRF Tandem_Repeat 807046 807128 112 + . . scaffold962 GLEAN mRNA 801599 803212 0.754198 - . ID=CGI_10027665; scaffold962 WUBlastX DNA_TcMar-Fot1 801599 803212 578 + . . scaffold962 GLEAN mRNA 900155 900385 0.455688 + . ID=CGI_10027670; scaffold962 WUBlastX LINE_L1 900155 900385 44 - . . scaffold962 GLEAN mRNA 898151 899161 0.455688 + . ID=CGI_10027670; scaffold962 WUBlastX LINE_RTE-BovB 898151 899161 141 - . . scaffold962 GLEAN mRNA 900263 900409 0.455688 + . ID=CGI_10027670; scaffold962 WUBlastX LINE_L1-Tx1 900263 900409 87 - . . scaffold962 GLEAN mRNA 900546 900875 0.455688 + . ID=CGI_10027670; scaffold962 WUBlastX LINE_L1-Tx1 900546 900875 99 - . . scaffold962 GLEAN mRNA 900959 901105 0.455688 + . ID=CGI_10027670; scaffold962 WUBlastX LINE_L1-Tx1 900959 901105 29 - . . scaffold962 GLEAN mRNA 898522 898845 0.455688 + . ID=CGI_10027670; scaffold962 WUBlastX LINE_RTE-BovB 898522 898845 151 - . . scaffold962 GLEAN mRNA 900263 900526 0.455688 + . ID=CGI_10027670; scaffold962 WUBlastX LINE_L1 900263 900526 63 - . . scaffold962 GLEAN mRNA 903631 903923 0.455688 + . ID=CGI_10027670; scaffold962 TRF Tandem_Repeat 903631 903923 320 + . . scaffold962 GLEAN mRNA 903664 903926 0.455688 + . ID=CGI_10027670; scaffold962 TRF Tandem_Repeat 903664 903926 368 + . . scaffold962 GLEAN mRNA 905066 905409 0.455688 + . ID=CGI_10027670; scaffold962 TRF Tandem_Repeat 905066 905409 200 + . . scaffold962 GLEAN mRNA 905094 905369 0.455688 + . ID=CGI_10027670; scaffold962 TRF Tandem_Repeat 905094 905369 229 + . . scaffold962 GLEAN mRNA 905094 905409 0.455688 + . ID=CGI_10027670; scaffold962 TRF Tandem_Repeat 905094 905409 235 + . . scaffold962 GLEAN mRNA 901323 901409 0.455688 + . ID=CGI_10027670; scaffold962 WUBlastX LINE_L1 901323 901409 40 - . . scaffold962 GLEAN mRNA 900908 901330 0.455688 + . ID=CGI_10027670; scaffold962 WUBlastX LINE_L1-Tx1 900908 901330 25 - . . scaffold962 GLEAN mRNA 932529 932835 0.999099 + . ID=CGI_10027672; scaffold962 TRF Tandem_Repeat 932529 932835 219 + . . scaffold962 GLEAN mRNA 932529 932798 0.999099 + . ID=CGI_10027672; scaffold962 TRF Tandem_Repeat 932529 932798 222 + . . scaffold962 GLEAN mRNA 934154 934178 0.999099 + . ID=CGI_10027672; scaffold962 TRF Tandem_Repeat 934154 934178 50 + . . scaffold962 GLEAN mRNA 936648 936791 0.999099 + . ID=CGI_10027672; scaffold962 TRF Tandem_Repeat 936648 936791 160 + . . scaffold962 GLEAN mRNA 938433 938621 0.999099 + . ID=CGI_10027672; scaffold962 TRF Tandem_Repeat 938433 938621 288 + . . scaffold962 GLEAN mRNA 938427 938643 0.999099 + . ID=CGI_10027672; scaffold962 TRF Tandem_Repeat 938427 938643 150 + . . scaffold962 GLEAN mRNA 938965 939052 0.999099 + . ID=CGI_10027672; scaffold962 TRF Tandem_Repeat 938965 939052 149 + . . scaffold962 GLEAN mRNA 940627 941087 0.999099 + . ID=CGI_10027672; scaffold962 TRF Tandem_Repeat 940627 941087 408 + . . scaffold962 GLEAN mRNA 951340 951365 0.998989 - . ID=CGI_10027673; scaffold962 TRF Tandem_Repeat 951340 951365 52 + . . scaffold962 GLEAN mRNA 955916 955941 0.998989 - . ID=CGI_10027673; scaffold962 TRF Tandem_Repeat 955916 955941 52 + . . scaffold962 GLEAN mRNA 975188 975367 0.921741 - . ID=CGI_10027674; scaffold962 WUBlastX LINE_RTE-X 975188 975367 102 + . . scaffold962 GLEAN mRNA 975104 975370 0.921741 - . ID=CGI_10027674; scaffold962 WUBlastX LINE_RTE-X 975104 975370 102 + . . scaffold962 GLEAN mRNA 1001376 1002195 0.593391 - . ID=CGI_10027676; scaffold962 TRF Tandem_Repeat 1001376 1002195 867 + . . scaffold962 GLEAN mRNA 1026132 1026254 0.297676 + . ID=CGI_10027679; scaffold962 TRF Tandem_Repeat 1026132 1026254 151 + . . scaffold962 GLEAN mRNA 1030551 1030656 0.999676 - . ID=CGI_10027680; scaffold962 TRF Tandem_Repeat 1030551 1030656 158 + . . scaffold962 GLEAN mRNA 1031173 1031389 0.999676 - . ID=CGI_10027680; scaffold962 TRF Tandem_Repeat 1031173 1031389 257 + . . scaffold962 GLEAN mRNA 1031171 1031439 0.999676 - . ID=CGI_10027680; scaffold962 TRF Tandem_Repeat 1031171 1031439 254 + . . scaffold962 GLEAN mRNA 1031863 1032191 0.999676 - . ID=CGI_10027680; scaffold962 TRF Tandem_Repeat 1031863 1032191 176 + . . scaffold962 GLEAN mRNA 1031863 1032236 0.999676 - . ID=CGI_10027680; scaffold962 TRF Tandem_Repeat 1031863 1032236 287 + . . scaffold962 GLEAN mRNA 1031907 1032236 0.999676 - . ID=CGI_10027680; scaffold962 TRF Tandem_Repeat 1031907 1032236 207 + . . scaffold962 GLEAN mRNA 1031914 1032236 0.999676 - . ID=CGI_10027680; scaffold962 TRF Tandem_Repeat 1031914 1032236 171 + . . scaffold962 GLEAN mRNA 1050503 1050737 0.8139 - . ID=CGI_10027681; scaffold962 TRF Tandem_Repeat 1050503 1050737 416 + . . scaffold962 GLEAN mRNA 1062008 1062103 0.8139 - . ID=CGI_10027681; scaffold962 TRF Tandem_Repeat 1062008 1062103 192 + . . scaffold962 GLEAN mRNA 1066641 1066875 0.8139 - . ID=CGI_10027681; scaffold962 TRF Tandem_Repeat 1066641 1066875 201 + . . scaffold962 GLEAN mRNA 1066641 1067034 0.8139 - . ID=CGI_10027681; scaffold962 TRF Tandem_Repeat 1066641 1067034 192 + . . scaffold962 GLEAN mRNA 1086555 1087031 1 - . ID=CGI_10027683; scaffold962 WUBlastX LINE_RTE-X 1086555 1087031 132 - . . scaffold962 GLEAN mRNA 1086423 1087097 1 - . ID=CGI_10027683; scaffold962 WUBlastX LINE_RTE-X 1086423 1087097 96 - . . scaffold962 GLEAN mRNA 1088080 1088187 1 - . ID=CGI_10027683; scaffold962 WUBlastX LINE_CR1-L2 1088080 1088187 57 + . . scaffold962 GLEAN mRNA 1087725 1087898 1 - . ID=CGI_10027683; scaffold962 WUBlastX LINE_CR1-L2 1087725 1087898 97 + . . scaffold962 GLEAN mRNA 1087901 1088092 1 - . ID=CGI_10027683; scaffold962 WUBlastX LINE_CR1-L2 1087901 1088092 63 + . . scaffold962 GLEAN mRNA 1087554 1087898 1 - . ID=CGI_10027683; scaffold962 WUBlastX LINE_L2 1087554 1087898 64 + . . scaffold962 GLEAN mRNA 1087892 1088062 1 - . ID=CGI_10027683; scaffold962 WUBlastX LINE_L2 1087892 1088062 82 + . . scaffold962 GLEAN mRNA 1086495 1086956 1 - . ID=CGI_10027683; scaffold962 WUBlastX LINE_RTE-X 1086495 1086956 135 - . . scaffold962 GLEAN mRNA 1092454 1092503 0.999611 + . ID=CGI_10027684; scaffold962 TRF Tandem_Repeat 1092454 1092503 75 + . . scaffold962 GLEAN mRNA 1093052 1095373 0.999611 + . ID=CGI_10027684; scaffold962 WUBlastX LINE_L1-Tx1 1093052 1095373 978 + . . scaffold962 GLEAN mRNA 1101802 1102646 0.604906 - . ID=CGI_10027685; scaffold962 TRF Tandem_Repeat 1101802 1102646 1026 + . . scaffold962 GLEAN mRNA 1105742 1105770 0.604906 - . ID=CGI_10027685; scaffold962 TRF Tandem_Repeat 1105742 1105770 58 + . . scaffold962 GLEAN mRNA 1134029 1134078 0.806507 - . ID=CGI_10027687; scaffold962 TRF Tandem_Repeat 1134029 1134078 75 + . . scaffold962 GLEAN mRNA 1145267 1145295 0.806507 - . ID=CGI_10027687; scaffold962 TRF Tandem_Repeat 1145267 1145295 58 + . . scaffold962 GLEAN mRNA 1161313 1162598 0.806507 - . ID=CGI_10027687; scaffold962 TRF Tandem_Repeat 1161313 1162598 1849 + . . scaffold962 GLEAN mRNA 1162622 1162679 0.806507 - . ID=CGI_10027687; scaffold962 TRF Tandem_Repeat 1162622 1162679 62 + . . scaffold962 GLEAN mRNA 1162625 1162687 0.806507 - . ID=CGI_10027687; scaffold962 TRF Tandem_Repeat 1162625 1162687 90 + . . scaffold962 GLEAN mRNA 1162622 1162687 0.806507 - . ID=CGI_10027687; scaffold962 TRF Tandem_Repeat 1162622 1162687 114 + . . scaffold962 GLEAN mRNA 1162629 1162688 0.806507 - . ID=CGI_10027687; scaffold962 TRF Tandem_Repeat 1162629 1162688 66 + . . scaffold962 GLEAN mRNA 1164381 1164455 0.806507 - . ID=CGI_10027687; scaffold962 TRF Tandem_Repeat 1164381 1164455 143 + . . scaffold962 GLEAN mRNA 1172825 1173417 0.806507 - . ID=CGI_10027687; scaffold962 TRF Tandem_Repeat 1172825 1173417 942 + . . scaffold962 GLEAN mRNA 1188262 1188296 0.806507 - . ID=CGI_10027687; scaffold962 TRF Tandem_Repeat 1188262 1188296 70 + . . scaffold962 GLEAN mRNA 1249023 1249098 1 - . ID=CGI_10027692; scaffold962 TRF Tandem_Repeat 1249023 1249098 152 + . . scaffold962 GLEAN mRNA 1323012 1323191 0.896664 + . ID=CGI_10027695; scaffold962 WUBlastX DNA_TcMar-Tc1 1323012 1323191 50 + . . scaffold962 GLEAN mRNA 1404791 1404826 0.23217 - . ID=CGI_10027697; scaffold962 TRF Tandem_Repeat 1404791 1404826 63 + . . scaffold962 GLEAN mRNA 1408772 1408838 0.23217 - . ID=CGI_10027697; scaffold962 TRF Tandem_Repeat 1408772 1408838 125 + . . scaffold962 GLEAN mRNA 1450885 1451232 0.463986 - . ID=CGI_10027698; scaffold962 TRF Tandem_Repeat 1450885 1451232 479 + . . scaffold962 GLEAN mRNA 1451552 1451582 0.463986 - . ID=CGI_10027698; scaffold962 TRF Tandem_Repeat 1451552 1451582 62 + . . scaffold962 GLEAN mRNA 1452804 1452841 0.463986 - . ID=CGI_10027698; scaffold962 TRF Tandem_Repeat 1452804 1452841 67 + . . scaffold962 GLEAN mRNA 1452890 1452924 0.463986 - . ID=CGI_10027698; scaffold962 TRF Tandem_Repeat 1452890 1452924 70 + . . scaffold1301 GLEAN mRNA 63914 64168 0.618186 - . ID=CGI_10027703; scaffold1301 WUBlastX DNA_hAT 63914 64168 66 - . . scaffold1301 GLEAN mRNA 63902 63944 0.618186 - . ID=CGI_10027703; scaffold1301 WUBlastX DNA_hAT-Charlie 63678 63944 62 - . . scaffold1301 GLEAN mRNA 71272 71305 0.984414 - . ID=CGI_10027704; scaffold1301 TRF Tandem_Repeat 71272 71305 68 + . . scaffold1301 GLEAN mRNA 162729 163118 1 + . ID=CGI_10027708; scaffold1301 TRF Tandem_Repeat 162729 163118 227 + . . scaffold1301 GLEAN mRNA 210113 210166 0.999542 + . ID=CGI_10027709; scaffold1301 TRF Tandem_Repeat 210113 210166 108 + . . scaffold1301 GLEAN mRNA 242007 242088 0.998692 + . ID=CGI_10027711; scaffold1301 TRF Tandem_Repeat 242007 242088 164 + . . scaffold1301 GLEAN mRNA 316598 317287 0.984699 - . ID=CGI_10027714; scaffold1301 WUBlastX LTR_Ngaro 316598 317287 142 + . . scaffold1301 GLEAN mRNA 318962 319939 0.984699 - . ID=CGI_10027714; scaffold1301 WUBlastX LTR_Ngaro 318962 319939 346 + . . scaffold1301 GLEAN mRNA 317475 319052 0.984699 - . ID=CGI_10027714; scaffold1301 WUBlastX LTR_Ngaro 317475 319052 1078 + . . scaffold1301 GLEAN mRNA 319673 319993 0.984699 - . ID=CGI_10027714; scaffold1301 WUBlastX LTR_Ngaro 319673 319993 38 + . . scaffold1301 GLEAN mRNA 316577 317398 0.984699 - . ID=CGI_10027714; scaffold1301 WUBlastX LTR_Ngaro 316577 317398 48 + . . scaffold1301 GLEAN mRNA 351076 351102 1 + . ID=CGI_10027715; scaffold1301 TRF Tandem_Repeat 351076 351102 54 + . . scaffold1301 GLEAN mRNA 436494 436531 0.999675 - . ID=CGI_10027721; scaffold1301 TRF Tandem_Repeat 436494 436531 76 + . . scaffold1301 GLEAN mRNA 439885 440044 0.999675 - . ID=CGI_10027721; scaffold1301 TRF Tandem_Repeat 439885 440044 178 + . . scaffold1301 GLEAN mRNA 460845 461054 0.999634 + . ID=CGI_10027722; scaffold1301 TRF Tandem_Repeat 460845 461054 115 + . . scaffold1301 GLEAN mRNA 460891 461810 0.999634 + . ID=CGI_10027722; scaffold1301 TRF Tandem_Repeat 460891 461810 1005 + . . scaffold1301 GLEAN mRNA 460891 461810 0.999634 + . ID=CGI_10027722; scaffold1301 TRF Tandem_Repeat 460891 461810 1168 + . . scaffold1301 GLEAN mRNA 470356 470598 0.999634 + . ID=CGI_10027722; scaffold1301 TRF Tandem_Repeat 470356 470598 179 + . . scaffold1301 GLEAN mRNA 470601 471343 0.999634 + . ID=CGI_10027722; scaffold1301 TRF Tandem_Repeat 470601 471343 728 + . . scaffold1301 GLEAN mRNA 470470 471264 0.999634 + . ID=CGI_10027722; scaffold1301 TRF Tandem_Repeat 470470 471264 423 + . . scaffold1301 GLEAN mRNA 476017 476076 0.999634 + . ID=CGI_10027722; scaffold1301 TRF Tandem_Repeat 476017 476076 50 + . . scaffold1301 GLEAN mRNA 552313 553804 0.499723 + . ID=CGI_10027730; scaffold1301 TRF Tandem_Repeat 552313 553804 1115 + . . scaffold1301 GLEAN mRNA 552313 553769 0.499723 + . ID=CGI_10027730; scaffold1301 TRF Tandem_Repeat 552313 553769 1095 + . . scaffold1301 GLEAN mRNA 552983 553804 0.499723 + . ID=CGI_10027730; scaffold1301 TRF Tandem_Repeat 552983 553804 710 + . . scaffold1301 GLEAN mRNA 564500 564536 0.499723 + . ID=CGI_10027730; scaffold1301 TRF Tandem_Repeat 564500 564536 67 + . . scaffold1301 GLEAN mRNA 552313 553804 0.999415 - . ID=CGI_10027731; scaffold1301 TRF Tandem_Repeat 552313 553804 1115 + . . scaffold1301 GLEAN mRNA 552313 553769 0.999415 - . ID=CGI_10027731; scaffold1301 TRF Tandem_Repeat 552313 553769 1095 + . . scaffold1301 GLEAN mRNA 552983 553804 0.999415 - . ID=CGI_10027731; scaffold1301 TRF Tandem_Repeat 552983 553804 710 + . . scaffold1301 GLEAN mRNA 564500 564536 0.999415 - . ID=CGI_10027731; scaffold1301 TRF Tandem_Repeat 564500 564536 67 + . . scaffold1301 GLEAN mRNA 570550 571374 0.999624 + . ID=CGI_10027732; scaffold1301 TRF Tandem_Repeat 570550 571374 1094 + . . scaffold1301 GLEAN mRNA 572456 573232 0.999624 + . ID=CGI_10027732; scaffold1301 TRF Tandem_Repeat 572456 573232 1187 + . . scaffold1301 GLEAN mRNA 622496 622531 0.288547 + . ID=CGI_10027735; scaffold1301 TRF Tandem_Repeat 622496 622531 72 + . . scaffold1301 GLEAN mRNA 623138 623180 0.288547 + . ID=CGI_10027735; scaffold1301 TRF Tandem_Repeat 623138 623180 86 + . . scaffold1301 GLEAN mRNA 625536 625952 0.288547 + . ID=CGI_10027735; scaffold1301 WUBlastX LTR_Pao 625536 625952 252 - . . scaffold1301 GLEAN mRNA 625952 626239 0.288547 + . ID=CGI_10027735; scaffold1301 WUBlastX LTR_Pao 625952 626239 197 - . . scaffold1301 GLEAN mRNA 627195 627569 0.288547 + . ID=CGI_10027735; scaffold1301 WUBlastX LTR_Pao 627195 627569 130 - . . scaffold1301 GLEAN mRNA 627496 627915 0.288547 + . ID=CGI_10027735; scaffold1301 WUBlastX LTR_Pao 627496 627915 221 - . . scaffold1301 GLEAN mRNA 624634 625536 0.288547 + . ID=CGI_10027735; scaffold1301 WUBlastX LTR_Pao 624634 625536 786 - . . scaffold1301 GLEAN mRNA 627923 628330 0.288547 + . ID=CGI_10027735; scaffold1301 WUBlastX LTR_Pao 627923 628330 279 - . . scaffold1301 GLEAN mRNA 628382 628711 0.288547 + . ID=CGI_10027735; scaffold1301 WUBlastX LTR_Pao 628382 628711 22 - . . scaffold1301 GLEAN mRNA 625952 626311 0.288547 + . ID=CGI_10027735; scaffold1301 WUBlastX LTR_Pao 625952 626311 36 - . . scaffold1301 GLEAN mRNA 627923 628651 0.288547 + . ID=CGI_10027735; scaffold1301 WUBlastX LTR_Pao 627923 628651 250 - . . scaffold1301 GLEAN mRNA 647161 647203 0.288547 + . ID=CGI_10027735; scaffold1301 TRF Tandem_Repeat 647161 647203 86 + . . scaffold1301 GLEAN mRNA 648238 648301 0.288547 + . ID=CGI_10027735; scaffold1301 TRF Tandem_Repeat 648238 648301 128 + . . scaffold1301 GLEAN mRNA 651725 651765 0.288547 + . ID=CGI_10027735; scaffold1301 TRF Tandem_Repeat 651725 651765 73 + . . scaffold1301 GLEAN mRNA 658773 658838 0.288547 + . ID=CGI_10027735; scaffold1301 TRF Tandem_Repeat 658773 658838 114 + . . scaffold1301 GLEAN mRNA 660344 661009 0.288547 + . ID=CGI_10027735; scaffold1301 TRF Tandem_Repeat 660344 661009 1000 + . . scaffold1301 GLEAN mRNA 694411 694675 0.999676 - . ID=CGI_10027737; scaffold1301 TRF Tandem_Repeat 694411 694675 408 + . . scaffold1301 GLEAN mRNA 768409 768433 0.999662 + . ID=CGI_10027741; scaffold1301 TRF Tandem_Repeat 768409 768433 50 + . . scaffold1301 GLEAN mRNA 789188 789234 0.518044 + . ID=CGI_10027743; scaffold1301 TRF Tandem_Repeat 789188 789234 94 + . . scaffold1301 GLEAN mRNA 789571 789619 0.518044 + . ID=CGI_10027743; scaffold1301 TRF Tandem_Repeat 789571 789619 98 + . . scaffold1301 GLEAN mRNA 792548 792604 0.518044 + . ID=CGI_10027743; scaffold1301 TRF Tandem_Repeat 792548 792604 114 + . . scaffold1301 GLEAN mRNA 792941 792989 0.518044 + . ID=CGI_10027743; scaffold1301 TRF Tandem_Repeat 792941 792989 98 + . . scaffold1301 GLEAN mRNA 795598 795894 0.518044 + . ID=CGI_10027743; scaffold1301 WUBlastX DNA_MuDR 795598 795894 24 - . . scaffold1301 GLEAN mRNA 795999 796262 0.518044 + . ID=CGI_10027743; scaffold1301 WUBlastX DNA_MuDR 795999 796262 118 - . . scaffold1301 GLEAN mRNA 796026 796304 0.518044 + . ID=CGI_10027743; scaffold1301 WUBlastX DNA_MuDR 796026 796304 100 - . . scaffold1301 GLEAN mRNA 796383 796631 0.518044 + . ID=CGI_10027743; scaffold1301 WUBlastX DNA_MuDR 796383 796631 110 - . . scaffold1301 GLEAN mRNA 796035 796352 0.518044 + . ID=CGI_10027743; scaffold1301 WUBlastX DNA_MuDR 796035 796352 86 - . . scaffold1301 GLEAN mRNA 795655 795894 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 795598 795894 24 - . . scaffold1301 GLEAN mRNA 795999 796262 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 795999 796262 118 - . . scaffold1301 GLEAN mRNA 796026 796304 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 796026 796304 100 - . . scaffold1301 GLEAN mRNA 796383 796631 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 796383 796631 110 - . . scaffold1301 GLEAN mRNA 796035 796352 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 796035 796352 86 - . . scaffold1301 GLEAN mRNA 838758 838787 0.789172 + . ID=CGI_10027745; scaffold1301 TRF Tandem_Repeat 838758 838787 51 + . . scaffold1301 GLEAN mRNA 894610 895462 1 + . ID=CGI_10027746; scaffold1301 TRF Tandem_Repeat 894610 895462 1463 + . . scaffold1301 GLEAN mRNA 922775 922821 0.992511 - . ID=CGI_10027749; scaffold1301 TRF Tandem_Repeat 922775 922821 51 + . . scaffold1301 GLEAN mRNA 945397 945428 0.536299 + . ID=CGI_10027751; scaffold1301 TRF Tandem_Repeat 945397 945428 64 + . . scaffold1301 GLEAN mRNA 945545 946312 0.536299 + . ID=CGI_10027751; scaffold1301 TRF Tandem_Repeat 945545 946312 976 + . . scaffold1301 GLEAN mRNA 947076 947207 0.536299 + . ID=CGI_10027751; scaffold1301 TRF Tandem_Repeat 947076 947207 52 + . . scaffold1301 GLEAN mRNA 955591 956124 0.536299 + . ID=CGI_10027751; scaffold1301 WUBlastX LINE_RTE-X 955591 956124 138 + . . scaffold1301 GLEAN mRNA 958126 959520 0.536299 + . ID=CGI_10027751; scaffold1301 WUBlastX DNA_TcMar-Pogo 958126 959520 528 + . . scaffold1301 GLEAN mRNA 955501 956004 0.536299 + . ID=CGI_10027751; scaffold1301 WUBlastX LINE_RTE-X 955501 956004 83 + . . scaffold1301 GLEAN mRNA 958039 958431 0.536299 + . ID=CGI_10027751; scaffold1301 WUBlastX DNA_TcMar-Tigge 958039 958431 61 + . . scaffold1301 GLEAN mRNA 1014472 1014534 0.999676 - . ID=CGI_10027756; scaffold1301 TRF Tandem_Repeat 1014472 1014534 103 + . . scaffold1301 GLEAN mRNA 1064291 1064886 0.998606 - . ID=CGI_10027758; scaffold1301 TRF Tandem_Repeat 1064291 1064886 711 + . . scaffold1301 GLEAN mRNA 1068159 1068188 0.998606 - . ID=CGI_10027758; scaffold1301 TRF Tandem_Repeat 1068159 1068188 60 + . . scaffold1301 GLEAN mRNA 1090736 1090826 0.998606 - . ID=CGI_10027758; scaffold1301 TRF Tandem_Repeat 1090736 1090826 94 + . . scaffold1301 GLEAN mRNA 1179237 1179509 0.996929 + . ID=CGI_10027764; scaffold1301 TRF Tandem_Repeat 1179237 1179509 501 + . . scaffold1301 GLEAN mRNA 1239440 1239795 0.999999 + . ID=CGI_10027767; scaffold1301 TRF Tandem_Repeat 1239440 1239795 329 + . . scaffold1301 GLEAN mRNA 1244540 1244743 0.99974 - . ID=CGI_10027768; scaffold1301 WUBlastX LINE_RTE-X 1244540 1244743 22 + . . scaffold1301 GLEAN mRNA 1244633 1244743 0.99974 - . ID=CGI_10027768; scaffold1301 WUBlastX LINE_RTE-X 1244633 1244743 24 + . . scaffold1301 GLEAN mRNA 1244784 1244984 0.99974 - . ID=CGI_10027768; scaffold1301 WUBlastX LINE_RTE-X 1244784 1244984 51 + . . scaffold1301 GLEAN mRNA 1244784 1245041 0.99974 - . ID=CGI_10027768; scaffold1301 WUBlastX LINE_RTE-X 1244784 1245041 33 + . . scaffold1301 GLEAN mRNA 1244766 1244945 0.99974 - . ID=CGI_10027768; scaffold1301 WUBlastX LINE_RTE-X 1244766 1244945 60 + . . scaffold1301 GLEAN mRNA 1246042 1247460 0.99974 - . ID=CGI_10027768; scaffold1301 TRF Tandem_Repeat 1246042 1247460 2015 + . . scaffold1301 GLEAN mRNA 1249626 1249683 0.99974 - . ID=CGI_10027768; scaffold1301 TRF Tandem_Repeat 1249626 1249683 98 + . . scaffold1301 GLEAN mRNA 1250427 1250696 0.99974 - . ID=CGI_10027768; scaffold1301 TRF Tandem_Repeat 1250427 1250696 438 + . . scaffold1301 GLEAN mRNA 1258491 1258562 0.99974 - . ID=CGI_10027768; scaffold1301 TRF Tandem_Repeat 1258491 1258562 99 + . . scaffold1301 GLEAN mRNA 1258816 1259221 0.99974 - . ID=CGI_10027768; scaffold1301 TRF Tandem_Repeat 1258816 1259221 231 + . . scaffold1301 GLEAN mRNA 1268661 1268785 0.999683 - . ID=CGI_10027769; scaffold1301 TRF Tandem_Repeat 1268661 1268785 196 + . . scaffold1301 GLEAN mRNA 1281487 1281533 1 - . ID=CGI_10027770; scaffold1301 TRF Tandem_Repeat 1281487 1281533 94 + . . scaffold1301 GLEAN mRNA 1287927 1287971 1 - . ID=CGI_10027770; scaffold1301 TRF Tandem_Repeat 1287927 1287971 90 + . . scaffold1301 GLEAN mRNA 1370702 1370730 0.815066 - . ID=CGI_10027774; scaffold1301 TRF Tandem_Repeat 1370702 1370730 58 + . . scaffold1301 GLEAN mRNA 1402053 1402093 0.999949 - . ID=CGI_10027777; scaffold1301 TRF Tandem_Repeat 1402053 1402093 55 + . . scaffold198 GLEAN mRNA 15227 15290 0.65089 + . ID=CGI_10027787; scaffold198 TRF Tandem_Repeat 15227 15290 128 + . . scaffold198 GLEAN mRNA 18116 18144 0.65089 + . ID=CGI_10027787; scaffold198 TRF Tandem_Repeat 18116 18144 58 + . . scaffold198 GLEAN mRNA 15573 16463 0.65089 + . ID=CGI_10027787; scaffold198 WUBlastX DNA_TcMar-Tc1 15573 16463 188 - . . scaffold198 GLEAN mRNA 50786 50844 0.518005 - . ID=CGI_10027788; scaffold198 TRF Tandem_Repeat 50786 50844 109 + . . scaffold198 GLEAN mRNA 101556 101639 0.209172 - . ID=CGI_10027793; scaffold198 TRF Tandem_Repeat 101556 101639 50 + . . scaffold198 GLEAN mRNA 101556 101639 0.209172 - . ID=CGI_10027793; scaffold198 TRF Tandem_Repeat 101556 101639 50 + . . scaffold198 GLEAN mRNA 113463 113553 0.209172 - . ID=CGI_10027793; scaffold198 TRF Tandem_Repeat 113463 113553 146 + . . scaffold198 GLEAN mRNA 113463 113553 0.209172 - . ID=CGI_10027793; scaffold198 TRF Tandem_Repeat 113463 113553 157 + . . scaffold198 GLEAN mRNA 113463 113553 0.555991 + . ID=CGI_10027794; scaffold198 TRF Tandem_Repeat 113463 113553 146 + . . scaffold198 GLEAN mRNA 113463 113553 0.555991 + . ID=CGI_10027794; scaffold198 TRF Tandem_Repeat 113463 113553 157 + . . scaffold198 GLEAN mRNA 127420 127447 0.958051 + . ID=CGI_10027795; scaffold198 TRF Tandem_Repeat 127420 127447 56 + . . scaffold198 GLEAN mRNA 127535 127561 0.958051 + . ID=CGI_10027795; scaffold198 TRF Tandem_Repeat 127535 127561 54 + . . scaffold198 GLEAN mRNA 129619 129813 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129619 129813 76 - . . scaffold198 GLEAN mRNA 129368 129568 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129368 129568 96 - . . scaffold198 GLEAN mRNA 129709 129813 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129709 129813 83 - . . scaffold198 GLEAN mRNA 130062 130259 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 130062 130259 72 - . . scaffold198 GLEAN mRNA 130032 130214 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 130032 130214 41 - . . scaffold198 GLEAN mRNA 129305 129514 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129305 129514 41 - . . scaffold198 GLEAN mRNA 129712 129846 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 129712 129846 33 - . . scaffold198 GLEAN mRNA 130077 130199 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_Harbinger 130077 130199 74 - . . scaffold198 GLEAN mRNA 132509 132937 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_TcMar-Tc1 132509 132937 53 - . . scaffold198 GLEAN mRNA 131924 132136 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_TcMar-Tc1 131924 132136 143 - . . scaffold198 GLEAN mRNA 132106 132432 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_TcMar-Tc1 132106 132432 195 - . . scaffold198 GLEAN mRNA 132473 132856 0.958051 + . ID=CGI_10027795; scaffold198 WUBlastX DNA_TcMar-Tc1 132473 132856 172 - . . scaffold198 GLEAN mRNA 147501 147601 0.958051 + . ID=CGI_10027795; scaffold198 TRF Tandem_Repeat 147501 147601 78 + . . scaffold198 GLEAN mRNA 129619 129813 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 129619 129813 76 - . . scaffold198 GLEAN mRNA 129368 129568 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 129368 129568 96 - . . scaffold198 GLEAN mRNA 129709 129813 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 129709 129813 83 - . . scaffold198 GLEAN mRNA 130062 130259 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 130062 130259 72 - . . scaffold198 GLEAN mRNA 130032 130214 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 130032 130214 41 - . . scaffold198 GLEAN mRNA 129305 129514 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 129305 129514 41 - . . scaffold198 GLEAN mRNA 129712 129846 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 129712 129846 33 - . . scaffold198 GLEAN mRNA 130077 130199 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 130077 130199 74 - . . scaffold198 GLEAN mRNA 132509 132937 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_TcMar-Tc1 132509 132937 53 - . . scaffold198 GLEAN mRNA 131924 132136 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_TcMar-Tc1 131924 132136 143 - . . scaffold198 GLEAN mRNA 132106 132432 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_TcMar-Tc1 132106 132432 195 - . . scaffold198 GLEAN mRNA 132473 132856 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_TcMar-Tc1 132473 132856 172 - . . scaffold198 GLEAN mRNA 147501 147601 0.927276 - . ID=CGI_10027796; scaffold198 TRF Tandem_Repeat 147501 147601 78 + . . scaffold198 GLEAN mRNA 166221 167845 0.689481 + . ID=CGI_10027797; scaffold198 TRF Tandem_Repeat 166221 167845 1943 + . . scaffold198 GLEAN mRNA 166223 167845 0.689481 + . ID=CGI_10027797; scaffold198 TRF Tandem_Repeat 166223 167845 2325 + . . scaffold198 GLEAN mRNA 169117 169235 0.689481 + . ID=CGI_10027797; scaffold198 TRF Tandem_Repeat 169117 169235 89 + . . scaffold198 GLEAN mRNA 172332 172435 0.689481 + . ID=CGI_10027797; scaffold198 TRF Tandem_Repeat 172332 172435 70 + . . scaffold198 GLEAN mRNA 180236 180261 0.421369 + . ID=CGI_10027798; scaffold198 TRF Tandem_Repeat 180236 180261 52 + . . scaffold198 GLEAN mRNA 180263 180357 0.421369 + . ID=CGI_10027798; scaffold198 TRF Tandem_Repeat 180263 180357 68 + . . scaffold198 GLEAN mRNA 248384 248420 0.6634 + . ID=CGI_10027799; scaffold198 TRF Tandem_Repeat 248384 248420 65 + . . scaffold198 GLEAN mRNA 250628 250662 0.6634 + . ID=CGI_10027799; scaffold198 TRF Tandem_Repeat 250628 250662 70 + . . scaffold198 GLEAN mRNA 322784 322830 0.999536 - . ID=CGI_10027804; scaffold198 TRF Tandem_Repeat 322784 322830 60 + . . scaffold198 GLEAN mRNA 322784 322828 0.999536 - . ID=CGI_10027804; scaffold198 TRF Tandem_Repeat 322784 322828 60 + . . scaffold198 GLEAN mRNA 329881 329998 1 - . ID=CGI_10027805; scaffold198 TRF Tandem_Repeat 329881 329998 148 + . . scaffold198 GLEAN mRNA 333286 335281 1 - . ID=CGI_10027805; scaffold198 TRF Tandem_Repeat 333286 335281 2519 + . . scaffold198 GLEAN mRNA 420311 420343 0.84054 + . ID=CGI_10027808; scaffold198 TRF Tandem_Repeat 420311 420343 66 + . . scaffold198 GLEAN mRNA 422431 422471 0.84054 + . ID=CGI_10027808; scaffold198 TRF Tandem_Repeat 422431 422471 82 + . . scaffold198 GLEAN mRNA 422548 422617 0.84054 + . ID=CGI_10027808; scaffold198 TRF Tandem_Repeat 422548 422617 140 + . . scaffold198 GLEAN mRNA 422974 423033 0.84054 + . ID=CGI_10027808; scaffold198 TRF Tandem_Repeat 422974 423033 66 + . . scaffold198 GLEAN mRNA 423249 423334 0.84054 + . ID=CGI_10027808; scaffold198 TRF Tandem_Repeat 423249 423334 147 + . . scaffold198 GLEAN mRNA 424154 424254 0.84054 + . ID=CGI_10027808; scaffold198 TRF Tandem_Repeat 424154 424254 94 + . . scaffold198 GLEAN mRNA 424294 424403 0.84054 + . ID=CGI_10027808; scaffold198 TRF Tandem_Repeat 424294 424403 170 + . . scaffold198 GLEAN mRNA 426061 426312 0.84054 + . ID=CGI_10027808; scaffold198 TRF Tandem_Repeat 426061 426312 377 + . . scaffold198 GLEAN mRNA 439448 439481 0.84054 + . ID=CGI_10027808; scaffold198 TRF Tandem_Repeat 439448 439481 68 + . . scaffold198 GLEAN mRNA 426700 427710 0.84054 + . ID=CGI_10027808; scaffold198 WUBlastX DNA_TcMar-Tc1 426700 427710 586 + . . scaffold198 GLEAN mRNA 426676 426807 0.84054 + . ID=CGI_10027808; scaffold198 WUBlastX DNA_TcMar-Marin 426676 426807 20 + . . scaffold198 GLEAN mRNA 469267 470723 0.657508 - . ID=CGI_10027810; scaffold198 TRF Tandem_Repeat 469267 470723 2066 + . . scaffold198 GLEAN mRNA 470747 470785 0.657508 - . ID=CGI_10027810; scaffold198 TRF Tandem_Repeat 470747 470785 51 + . . scaffold198 GLEAN mRNA 478382 478432 1 + . ID=CGI_10027811; scaffold198 TRF Tandem_Repeat 478382 478432 102 + . . scaffold198 GLEAN mRNA 479035 479060 1 + . ID=CGI_10027811; scaffold198 TRF Tandem_Repeat 479035 479060 52 + . . scaffold198 GLEAN mRNA 483594 483634 1 + . ID=CGI_10027811; scaffold198 TRF Tandem_Repeat 483594 483634 82 + . . scaffold198 GLEAN mRNA 535404 535429 0.338011 + . ID=CGI_10027815; scaffold198 TRF Tandem_Repeat 535404 535429 52 + . . scaffold198 GLEAN mRNA 537068 537109 0.338011 + . ID=CGI_10027815; scaffold198 TRF Tandem_Repeat 537068 537109 66 + . . scaffold198 GLEAN mRNA 548816 549589 0.338011 + . ID=CGI_10027815; scaffold198 WUBlastX LTR_Gypsy 548816 549589 169 + . . scaffold198 GLEAN mRNA 548534 549313 0.338011 + . ID=CGI_10027815; scaffold198 WUBlastX LTR_Gypsy 548534 549313 43 + . . scaffold198 GLEAN mRNA 549026 550378 0.338011 + . ID=CGI_10027815; scaffold198 WUBlastX LTR_Gypsy 549026 550378 219 + . . scaffold198 GLEAN mRNA 553334 553402 0.338011 + . ID=CGI_10027815; scaffold198 WUBlastX LTR_Gypsy 553334 553402 33 + . . scaffold198 GLEAN mRNA 549713 553234 0.338011 + . ID=CGI_10027815; scaffold198 WUBlastX LTR_Gypsy 549713 553234 1845 + . . scaffold198 GLEAN mRNA 550415 553201 0.338011 + . ID=CGI_10027815; scaffold198 WUBlastX LTR_Gypsy-Cigr 550415 553201 2093 + . . scaffold198 GLEAN mRNA 552572 553378 0.338011 + . ID=CGI_10027815; scaffold198 WUBlastX LTR_Gypsy 552572 553378 136 + . . scaffold198 GLEAN mRNA 689778 689810 0.990187 + . ID=CGI_10027818; scaffold198 TRF Tandem_Repeat 689778 689810 66 + . . scaffold198 GLEAN mRNA 774437 774850 0.999999 + . ID=CGI_10027821; scaffold198 WUBlastX LINE_L2 774437 774850 162 + . . scaffold198 GLEAN mRNA 788757 790227 0.999999 + . ID=CGI_10027821; scaffold198 TRF Tandem_Repeat 788757 790227 2353 + . . scaffold198 GLEAN mRNA 798222 799097 0.999999 + . ID=CGI_10027821; scaffold198 WUBlastX LTR_Gypsy 798222 799097 59 + . . scaffold198 GLEAN mRNA 800115 802553 0.999999 + . ID=CGI_10027821; scaffold198 WUBlastX LTR_Gypsy 800115 802553 1238 + . . scaffold198 GLEAN mRNA 797317 798003 0.999999 + . ID=CGI_10027821; scaffold198 WUBlastX LTR_Gypsy 797317 798003 203 + . . scaffold198 GLEAN mRNA 798354 802154 0.999999 + . ID=CGI_10027821; scaffold198 WUBlastX LTR_Gypsy 798354 802154 2181 + . . scaffold198 GLEAN mRNA 797158 798249 0.999999 + . ID=CGI_10027821; scaffold198 WUBlastX LTR_Gypsy 797158 798249 59 + . . scaffold198 GLEAN mRNA 815929 816171 0.248406 - . ID=CGI_10027824; scaffold198 TRF Tandem_Repeat 815929 816171 468 + . . scaffold198 GLEAN mRNA 817308 817659 0.248406 - . ID=CGI_10027824; scaffold198 TRF Tandem_Repeat 817308 817659 501 + . . scaffold198 GLEAN mRNA 817827 818102 0.248406 - . ID=CGI_10027824; scaffold198 TRF Tandem_Repeat 817827 818102 319 + . . scaffold198 GLEAN mRNA 821987 822032 0.248406 - . ID=CGI_10027824; scaffold198 TRF Tandem_Repeat 821987 822032 74 + . . scaffold198 GLEAN mRNA 821990 822040 0.248406 - . ID=CGI_10027824; scaffold198 TRF Tandem_Repeat 821990 822040 50 + . . scaffold198 GLEAN mRNA 818703 820014 0.248406 - . ID=CGI_10027824; scaffold198 TRF Tandem_Repeat 818703 820014 1308 + . . scaffold198 GLEAN mRNA 832555 832660 1 + . ID=CGI_10027825; scaffold198 TRF Tandem_Repeat 832555 832660 117 + . . scaffold198 GLEAN mRNA 835218 835326 1 + . ID=CGI_10027825; scaffold198 TRF Tandem_Repeat 835218 835326 130 + . . scaffold198 GLEAN mRNA 835218 835339 1 + . ID=CGI_10027825; scaffold198 TRF Tandem_Repeat 835218 835339 120 + . . scaffold198 GLEAN mRNA 835658 836048 1 + . ID=CGI_10027825; scaffold198 TRF Tandem_Repeat 835658 836048 383 + . . scaffold198 GLEAN mRNA 836240 836360 1 + . ID=CGI_10027825; scaffold198 TRF Tandem_Repeat 836240 836360 129 + . . scaffold198 GLEAN mRNA 858783 858968 0.999676 - . ID=CGI_10027828; scaffold198 TRF Tandem_Repeat 858783 858968 108 + . . scaffold198 GLEAN mRNA 870608 870767 0.365267 - . ID=CGI_10027830; scaffold198 TRF Tandem_Repeat 870608 870767 293 + . . scaffold198 GLEAN mRNA 868223 868470 0.365267 - . ID=CGI_10027830; scaffold198 TRF Tandem_Repeat 868223 868470 464 + . . scaffold198 GLEAN mRNA 890058 890209 0.763187 + . ID=CGI_10027833; scaffold198 TRF Tandem_Repeat 890058 890209 178 + . . scaffold198 GLEAN mRNA 895371 895436 0.763187 + . ID=CGI_10027833; scaffold198 TRF Tandem_Repeat 895371 895436 107 + . . scaffold198 GLEAN mRNA 913156 913716 1 + . ID=CGI_10027834; scaffold198 TRF Tandem_Repeat 913156 913716 761 + . . scaffold198 GLEAN mRNA 914447 915239 1 + . ID=CGI_10027834; scaffold198 TRF Tandem_Repeat 914447 915239 1002 + . . scaffold198 GLEAN mRNA 922844 922888 1 - . ID=CGI_10027835; scaffold198 TRF Tandem_Repeat 922844 922888 56 + . . scaffold198 GLEAN mRNA 936413 936854 1 - . ID=CGI_10027837; scaffold198 TRF Tandem_Repeat 936413 936854 568 + . . scaffold198 GLEAN mRNA 940778 940820 1 - . ID=CGI_10027837; scaffold198 TRF Tandem_Repeat 940778 940820 86 + . . scaffold198 GLEAN mRNA 1047151 1047225 0.499999 + . ID=CGI_10027842; scaffold198 TRF Tandem_Repeat 1047151 1047225 114 + . . scaffold198 GLEAN mRNA 1047152 1047218 0.499999 + . ID=CGI_10027842; scaffold198 TRF Tandem_Repeat 1047152 1047218 80 + . . scaffold198 GLEAN mRNA 1047230 1047886 0.499999 + . ID=CGI_10027842; scaffold198 TRF Tandem_Repeat 1047230 1047886 889 + . . scaffold198 GLEAN mRNA 1066252 1066519 0.966615 + . ID=CGI_10027844; scaffold198 TRF Tandem_Repeat 1066252 1066519 437 + . . scaffold198 GLEAN mRNA 1067574 1067798 0.966615 + . ID=CGI_10027844; scaffold198 TRF Tandem_Repeat 1067574 1067798 181 + . . scaffold198 GLEAN mRNA 1075421 1075509 0.966615 + . ID=CGI_10027844; scaffold198 TRF Tandem_Repeat 1075421 1075509 108 + . . scaffold198 GLEAN mRNA 1081449 1081744 0.966615 + . ID=CGI_10027844; scaffold198 TRF Tandem_Repeat 1081449 1081744 286 + . . scaffold198 GLEAN mRNA 1081544 1081938 0.966615 + . ID=CGI_10027844; scaffold198 TRF Tandem_Repeat 1081544 1081938 268 + . . scaffold198 GLEAN mRNA 1087396 1088324 0.893513 - . ID=CGI_10027846; scaffold198 TRF Tandem_Repeat 1087396 1088324 1615 + . . scaffold198 GLEAN mRNA 1089120 1089858 0.893513 - . ID=CGI_10027846; scaffold198 TRF Tandem_Repeat 1089120 1089858 815 + . . scaffold198 GLEAN mRNA 1089120 1089862 0.893513 - . ID=CGI_10027846; scaffold198 TRF Tandem_Repeat 1089120 1089862 731 + . . scaffold198 GLEAN mRNA 1089155 1089878 0.893513 - . ID=CGI_10027846; scaffold198 TRF Tandem_Repeat 1089155 1089878 590 + . . scaffold198 GLEAN mRNA 1091902 1092057 0.893513 - . ID=CGI_10027846; scaffold198 TRF Tandem_Repeat 1091902 1092057 249 + . . scaffold198 GLEAN mRNA 1092473 1093030 0.893513 - . ID=CGI_10027846; scaffold198 TRF Tandem_Repeat 1092473 1093030 753 + . . scaffold198 GLEAN mRNA 1098058 1098327 0.893513 - . ID=CGI_10027846; scaffold198 TRF Tandem_Repeat 1098058 1098327 163 + . . scaffold198 GLEAN mRNA 1106723 1107513 0.894821 - . ID=CGI_10027847; scaffold198 TRF Tandem_Repeat 1106723 1107513 1564 + . . scaffold198 GLEAN mRNA 1127025 1127599 0.894821 - . ID=CGI_10027847; scaffold198 TRF Tandem_Repeat 1127025 1127599 745 + . . scaffold198 GLEAN mRNA 1140292 1140415 0.999979 - . ID=CGI_10027849; scaffold198 TRF Tandem_Repeat 1140292 1140415 83 + . . scaffold198 GLEAN mRNA 1140294 1140494 0.999979 - . ID=CGI_10027849; scaffold198 TRF Tandem_Repeat 1140294 1140494 164 + . . scaffold198 GLEAN mRNA 1141424 1142221 0.999979 - . ID=CGI_10027849; scaffold198 TRF Tandem_Repeat 1141424 1142221 941 + . . scaffold198 GLEAN mRNA 1147807 1147992 0.999979 - . ID=CGI_10027849; scaffold198 TRF Tandem_Repeat 1147807 1147992 65 + . . scaffold198 GLEAN mRNA 1148966 1149882 0.999979 - . ID=CGI_10027849; scaffold198 TRF Tandem_Repeat 1148966 1149882 1244 + . . scaffold198 GLEAN mRNA 1148966 1149986 0.999979 - . ID=CGI_10027849; scaffold198 TRF Tandem_Repeat 1148966 1149986 1119 + . . scaffold198 GLEAN mRNA 1152881 1152907 0.999979 - . ID=CGI_10027849; scaffold198 TRF Tandem_Repeat 1152881 1152907 54 + . . scaffold198 GLEAN mRNA 1168104 1168148 0.535042 + . ID=CGI_10027850; scaffold198 TRF Tandem_Repeat 1168104 1168148 90 + . . scaffold198 GLEAN mRNA 1168473 1168524 0.535042 + . ID=CGI_10027850; scaffold198 TRF Tandem_Repeat 1168473 1168524 104 + . . scaffold198 GLEAN mRNA 1171358 1171429 0.535042 + . ID=CGI_10027850; scaffold198 WUBlastX LINE_CR1-L2 1171358 1171429 37 - . . scaffold198 GLEAN mRNA 1171222 1171365 0.535042 + . ID=CGI_10027850; scaffold198 WUBlastX LINE_CR1-L2 1171222 1171365 61 - . . scaffold198 GLEAN mRNA 1171222 1171335 0.535042 + . ID=CGI_10027850; scaffold198 WUBlastX LINE_CR1-L2 1171222 1171335 66 - . . scaffold198 GLEAN mRNA 1173822 1174639 0.99935 - . ID=CGI_10027851; scaffold198 TRF Tandem_Repeat 1173822 1174639 1317 + . . scaffold198 GLEAN mRNA 1171358 1171429 0.99935 - . ID=CGI_10027851; scaffold198 WUBlastX LINE_CR1-L2 1171358 1171429 37 - . . scaffold198 GLEAN mRNA 1171222 1171365 0.99935 - . ID=CGI_10027851; scaffold198 WUBlastX LINE_CR1-L2 1171222 1171365 61 - . . scaffold198 GLEAN mRNA 1171222 1171335 0.99935 - . ID=CGI_10027851; scaffold198 WUBlastX LINE_CR1-L2 1171222 1171335 66 - . . scaffold198 GLEAN mRNA 1227662 1227714 0.999675 - . ID=CGI_10027853; scaffold198 TRF Tandem_Repeat 1227662 1227714 63 + . . scaffold198 GLEAN mRNA 1230892 1230948 0.999675 - . ID=CGI_10027853; scaffold198 TRF Tandem_Repeat 1230892 1230948 98 + . . scaffold198 GLEAN mRNA 1231159 1231338 0.999675 - . ID=CGI_10027853; scaffold198 TRF Tandem_Repeat 1231159 1231338 360 + . . scaffold198 GLEAN mRNA 1230892 1230948 1 + . ID=CGI_10027854; scaffold198 TRF Tandem_Repeat 1230892 1230948 98 + . . scaffold198 GLEAN mRNA 1231159 1231338 1 + . ID=CGI_10027854; scaffold198 TRF Tandem_Repeat 1231159 1231338 360 + . . scaffold198 GLEAN mRNA 1243391 1243556 1 + . ID=CGI_10027855; scaffold198 TRF Tandem_Repeat 1243391 1243556 113 + . . scaffold198 GLEAN mRNA 1244059 1244254 1 + . ID=CGI_10027855; scaffold198 TRF Tandem_Repeat 1244059 1244254 130 + . . scaffold198 GLEAN mRNA 1244061 1244294 1 + . ID=CGI_10027855; scaffold198 TRF Tandem_Repeat 1244061 1244294 145 + . . scaffold198 GLEAN mRNA 1244200 1244294 1 + . ID=CGI_10027855; scaffold198 TRF Tandem_Repeat 1244200 1244294 86 + . . scaffold198 GLEAN mRNA 1244057 1244339 1 + . ID=CGI_10027855; scaffold198 TRF Tandem_Repeat 1244057 1244339 106 + . . scaffold198 GLEAN mRNA 1248411 1250128 1 + . ID=CGI_10027856; scaffold198 TRF Tandem_Repeat 1248411 1250128 2368 + . . scaffold198 GLEAN mRNA 1248411 1250128 1 + . ID=CGI_10027856; scaffold198 TRF Tandem_Repeat 1248411 1250128 2482 + . . scaffold198 GLEAN mRNA 1255889 1256266 0.999675 - . ID=CGI_10027857; scaffold198 TRF Tandem_Repeat 1255889 1256266 427 + . . scaffold198 GLEAN mRNA 1260544 1260709 0.999675 - . ID=CGI_10027857; scaffold198 TRF Tandem_Repeat 1260544 1260709 332 + . . scaffold198 GLEAN mRNA 1276813 1276852 1 - . ID=CGI_10027859; scaffold198 TRF Tandem_Repeat 1276813 1276852 80 + . . scaffold198 GLEAN mRNA 1303191 1303481 0.932941 + . ID=CGI_10027862; scaffold198 TRF Tandem_Repeat 1303191 1303481 127 + . . scaffold198 GLEAN mRNA 1303582 1303671 0.932941 + . ID=CGI_10027862; scaffold198 TRF Tandem_Repeat 1303582 1303671 110 + . . scaffold198 GLEAN mRNA 1312534 1312724 0.960179 - . ID=CGI_10027863; scaffold198 TRF Tandem_Repeat 1312534 1312724 283 + . . scaffold198 GLEAN mRNA 1315775 1316060 0.960179 - . ID=CGI_10027863; scaffold198 TRF Tandem_Repeat 1315775 1316060 493 + . . scaffold198 GLEAN mRNA 1317763 1317812 0.960179 - . ID=CGI_10027863; scaffold198 TRF Tandem_Repeat 1317763 1317812 64 + . . scaffold198 GLEAN mRNA 1317770 1317825 0.960179 - . ID=CGI_10027863; scaffold198 TRF Tandem_Repeat 1317770 1317825 85 + . . scaffold198 GLEAN mRNA 1317774 1317825 0.960179 - . ID=CGI_10027863; scaffold198 TRF Tandem_Repeat 1317774 1317825 59 + . . scaffold198 GLEAN mRNA 1330577 1330741 0.960179 - . ID=CGI_10027863; scaffold198 WUBlastX DNA_NOF 1330577 1330741 119 - . . scaffold198 GLEAN mRNA 1329451 1329714 0.960179 - . ID=CGI_10027863; scaffold198 WUBlastX DNA_MuDR 1329451 1329714 41 - . . scaffold198 GLEAN mRNA 1329469 1329555 0.960179 - . ID=CGI_10027863; scaffold198 WUBlastX DNA_NOF 1329469 1329555 48 - . . scaffold198 GLEAN mRNA 1330402 1330641 0.960179 - . ID=CGI_10027863; scaffold198 WUBlastX DNA_NOF 1330402 1330641 109 - . . scaffold198 GLEAN mRNA 1409629 1409680 0.549764 + . ID=CGI_10027867; scaffold198 TRF Tandem_Repeat 1409629 1409680 104 + . . scaffold198 GLEAN mRNA 1411542 1411753 0.549764 + . ID=CGI_10027867; scaffold198 TRF Tandem_Repeat 1411542 1411753 204 + . . scaffold198 GLEAN mRNA 1420173 1420283 0.549764 + . ID=CGI_10027867; scaffold198 TRF Tandem_Repeat 1420173 1420283 177 + . . scaffold198 GLEAN mRNA 1420693 1420778 0.549764 + . ID=CGI_10027867; scaffold198 TRF Tandem_Repeat 1420693 1420778 75 + . . scaffold198 GLEAN mRNA 1422023 1422392 0.549764 + . ID=CGI_10027867; scaffold198 TRF Tandem_Repeat 1422023 1422392 435 + . . scaffold198 GLEAN mRNA 1422114 1422224 0.549764 + . ID=CGI_10027867; scaffold198 TRF Tandem_Repeat 1422114 1422224 54 + . . scaffold198 GLEAN mRNA 1422309 1422389 0.549764 + . ID=CGI_10027867; scaffold198 TRF Tandem_Repeat 1422309 1422389 51 + . . scaffold198 GLEAN mRNA 1423606 1424575 0.549764 + . ID=CGI_10027867; scaffold198 TRF Tandem_Repeat 1423606 1424575 531 + . . scaffold198 GLEAN mRNA 1423770 1424563 0.549764 + . ID=CGI_10027867; scaffold198 TRF Tandem_Repeat 1423770 1424563 832 + . . scaffold198 GLEAN mRNA 1423902 1424563 0.549764 + . ID=CGI_10027867; scaffold198 TRF Tandem_Repeat 1423902 1424563 787 + . . scaffold198 GLEAN mRNA 1423978 1424563 0.549764 + . ID=CGI_10027867; scaffold198 TRF Tandem_Repeat 1423978 1424563 854 + . . scaffold198 GLEAN mRNA 1431578 1431628 0.999471 + . ID=CGI_10027868; scaffold198 TRF Tandem_Repeat 1431578 1431628 102 + . . scaffold198 GLEAN mRNA 1434414 1434446 0.999471 + . ID=CGI_10027868; scaffold198 TRF Tandem_Repeat 1434414 1434446 66 + . . scaffold198 GLEAN mRNA 1436243 1436514 0.999471 + . ID=CGI_10027868; scaffold198 TRF Tandem_Repeat 1436243 1436514 287 + . . scaffold198 GLEAN mRNA 1444049 1448200 0.999471 + . ID=CGI_10027868; scaffold198 TRF Tandem_Repeat 1444049 1448200 5340 + . . scaffold198 GLEAN mRNA 1446363 1447615 0.999471 + . ID=CGI_10027868; scaffold198 TRF Tandem_Repeat 1446363 1447615 164 + . . scaffold257 GLEAN mRNA 8778 8872 0.902878 - . ID=CGI_10027873; scaffold257 TRF Tandem_Repeat 8778 8872 57 + . . scaffold257 GLEAN mRNA 8778 8827 0.902878 - . ID=CGI_10027873; scaffold257 TRF Tandem_Repeat 8778 8827 64 + . . scaffold257 GLEAN mRNA 9049 9084 0.902878 - . ID=CGI_10027873; scaffold257 TRF Tandem_Repeat 9049 9084 54 + . . scaffold257 GLEAN mRNA 9041 9085 0.902878 - . ID=CGI_10027873; scaffold257 TRF Tandem_Repeat 9041 9085 60 + . . scaffold257 GLEAN mRNA 19318 19360 0.902878 - . ID=CGI_10027873; scaffold257 TRF Tandem_Repeat 19318 19360 52 + . . scaffold257 GLEAN mRNA 19631 19663 0.902878 - . ID=CGI_10027873; scaffold257 TRF Tandem_Repeat 19631 19663 59 + . . scaffold257 GLEAN mRNA 85544 85791 0.851212 + . ID=CGI_10027879; scaffold257 TRF Tandem_Repeat 85544 85791 444 + . . scaffold257 GLEAN mRNA 93418 93506 0.851212 + . ID=CGI_10027879; scaffold257 TRF Tandem_Repeat 93418 93506 178 + . . scaffold257 GLEAN mRNA 110196 110253 1 + . ID=CGI_10027881; scaffold257 TRF Tandem_Repeat 110196 110253 116 + . . scaffold257 GLEAN mRNA 127370 127532 0.997566 + . ID=CGI_10027883; scaffold257 TRF Tandem_Repeat 127370 127532 116 + . . scaffold257 GLEAN mRNA 128597 128634 0.997566 + . ID=CGI_10027883; scaffold257 TRF Tandem_Repeat 128597 128634 51 + . . scaffold257 GLEAN mRNA 128804 129653 0.997566 + . ID=CGI_10027883; scaffold257 TRF Tandem_Repeat 128804 129653 1529 + . . scaffold257 GLEAN mRNA 147815 147863 1 + . ID=CGI_10027885; scaffold257 TRF Tandem_Repeat 147815 147863 98 + . . scaffold257 GLEAN mRNA 158205 158878 0.386444 + . ID=CGI_10027887; scaffold257 TRF Tandem_Repeat 158205 158878 891 + . . scaffold257 GLEAN mRNA 174899 174935 1 + . ID=CGI_10027891; scaffold257 TRF Tandem_Repeat 174899 174935 74 + . . scaffold257 GLEAN mRNA 185428 185486 1 + . ID=CGI_10027892; scaffold257 TRF Tandem_Repeat 185428 185486 118 + . . scaffold257 GLEAN mRNA 189679 189734 1 + . ID=CGI_10027893; scaffold257 TRF Tandem_Repeat 189679 189734 112 + . . scaffold257 GLEAN mRNA 196310 196361 1 + . ID=CGI_10027893; scaffold257 TRF Tandem_Repeat 196310 196361 104 + . . scaffold257 GLEAN mRNA 235767 235896 1 - . ID=CGI_10027898; scaffold257 TRF Tandem_Repeat 235767 235896 107 + . . scaffold257 GLEAN mRNA 237026 237057 1 - . ID=CGI_10027898; scaffold257 TRF Tandem_Repeat 237026 237057 64 + . . scaffold257 GLEAN mRNA 311521 312660 0.999073 + . ID=CGI_10027906; scaffold257 WUBlastX LINE_Penelope 311521 312660 114 - . . scaffold257 GLEAN mRNA 319829 319942 0.999073 + . ID=CGI_10027906; scaffold257 WUBlastX LINE_RTE-X 319829 319942 73 + . . scaffold257 GLEAN mRNA 318027 318239 0.999073 + . ID=CGI_10027906; scaffold257 WUBlastX LINE_RTE-X 318027 318239 34 + . . scaffold257 GLEAN mRNA 319741 319836 0.999073 + . ID=CGI_10027906; scaffold257 WUBlastX LINE_RTE-X 319741 319836 25 + . . scaffold257 GLEAN mRNA 319829 319987 0.999073 + . ID=CGI_10027906; scaffold257 WUBlastX LINE_RTE-X 319829 319987 34 + . . scaffold257 GLEAN mRNA 319759 319830 0.999073 + . ID=CGI_10027906; scaffold257 WUBlastX LINE_RTE-X 319759 319830 40 + . . scaffold257 GLEAN mRNA 318188 318502 0.999073 + . ID=CGI_10027906; scaffold257 WUBlastX LINE_RTE-X 318188 318502 145 + . . scaffold257 GLEAN mRNA 318558 319394 0.999073 + . ID=CGI_10027906; scaffold257 WUBlastX LINE_RTE-X 318558 319394 52 + . . scaffold257 GLEAN mRNA 317511 317990 0.999073 + . ID=CGI_10027906; scaffold257 WUBlastX LINE_L1 317511 317990 149 + . . scaffold257 GLEAN mRNA 387043 387097 1 + . ID=CGI_10027908; scaffold257 TRF Tandem_Repeat 387043 387097 85 + . . scaffold257 GLEAN mRNA 392549 392670 1 + . ID=CGI_10027908; scaffold257 TRF Tandem_Repeat 392549 392670 208 + . . scaffold257 GLEAN mRNA 393736 393766 1 + . ID=CGI_10027908; scaffold257 TRF Tandem_Repeat 393736 393766 53 + . . scaffold257 GLEAN mRNA 404505 404705 0.983813 - . ID=CGI_10027909; scaffold257 TRF Tandem_Repeat 404505 404705 348 + . . scaffold257 GLEAN mRNA 418827 418888 0.376756 - . ID=CGI_10027910; scaffold257 TRF Tandem_Repeat 418827 418888 81 + . . scaffold257 GLEAN mRNA 428896 429039 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_Gypsy 428896 429039 26 - . . scaffold257 GLEAN mRNA 426908 428587 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_DIRS 426908 428587 996 - . . scaffold257 GLEAN mRNA 429373 429495 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_Gypsy 429373 429495 31 - . . scaffold257 GLEAN mRNA 426563 428605 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_DIRS 426563 428605 808 - . . scaffold257 GLEAN mRNA 425745 426668 0.376756 - . ID=CGI_10027910; scaffold257 WUBlastX LTR_DIRS 425745 426668 355 - . . scaffold257 GLEAN mRNA 418827 418888 0.479397 + . ID=CGI_10027911; scaffold257 TRF Tandem_Repeat 418827 418888 81 + . . scaffold257 GLEAN mRNA 428896 429039 0.479397 + . ID=CGI_10027911; scaffold257 WUBlastX LTR_Gypsy 428896 429039 26 - . . scaffold257 GLEAN mRNA 426908 428587 0.479397 + . ID=CGI_10027911; scaffold257 WUBlastX LTR_DIRS 426908 428587 996 - . . scaffold257 GLEAN mRNA 429373 429495 0.479397 + . ID=CGI_10027911; scaffold257 WUBlastX LTR_Gypsy 429373 429495 31 - . . scaffold257 GLEAN mRNA 426563 428605 0.479397 + . ID=CGI_10027911; scaffold257 WUBlastX LTR_DIRS 426563 428605 808 - . . scaffold257 GLEAN mRNA 425745 426668 0.479397 + . ID=CGI_10027911; scaffold257 WUBlastX LTR_DIRS 425745 426668 355 - . . scaffold257 GLEAN mRNA 470667 470694 0.999468 + . ID=CGI_10027915; scaffold257 TRF Tandem_Repeat 470667 470694 56 + . . scaffold257 GLEAN mRNA 541589 541628 1 + . ID=CGI_10027922; scaffold257 TRF Tandem_Repeat 541589 541628 62 + . . scaffold257 GLEAN mRNA 541798 542689 1 + . ID=CGI_10027922; scaffold257 TRF Tandem_Repeat 541798 542689 864 + . . scaffold257 GLEAN mRNA 566714 566765 0.999949 + . ID=CGI_10027924; scaffold257 TRF Tandem_Repeat 566714 566765 104 + . . scaffold257 GLEAN mRNA 572831 573062 0.999949 + . ID=CGI_10027924; scaffold257 TRF Tandem_Repeat 572831 573062 225 + . . scaffold257 GLEAN mRNA 572831 573062 0.999949 + . ID=CGI_10027924; scaffold257 TRF Tandem_Repeat 572831 573062 232 + . . scaffold257 GLEAN mRNA 573486 573677 0.999949 + . ID=CGI_10027924; scaffold257 TRF Tandem_Repeat 573486 573677 79 + . . scaffold257 GLEAN mRNA 581717 581756 0.999949 + . ID=CGI_10027924; scaffold257 TRF Tandem_Repeat 581717 581756 80 + . . scaffold257 GLEAN mRNA 582080 582387 0.999949 + . ID=CGI_10027924; scaffold257 TRF Tandem_Repeat 582080 582387 351 + . . scaffold257 GLEAN mRNA 582080 582387 0.999949 + . ID=CGI_10027924; scaffold257 TRF Tandem_Repeat 582080 582387 425 + . . scaffold257 GLEAN mRNA 582080 582387 0.999949 + . ID=CGI_10027924; scaffold257 TRF Tandem_Repeat 582080 582387 441 + . . scaffold257 GLEAN mRNA 615085 615148 1 + . ID=CGI_10027925; scaffold257 TRF Tandem_Repeat 615085 615148 83 + . . scaffold257 GLEAN mRNA 722978 723316 0.55755 + . ID=CGI_10027927; scaffold257 TRF Tandem_Repeat 722978 723316 425 + . . scaffold257 GLEAN mRNA 738356 738403 0.634611 + . ID=CGI_10027928; scaffold257 TRF Tandem_Repeat 738356 738403 96 + . . scaffold257 GLEAN mRNA 790426 790490 1 + . ID=CGI_10027931; scaffold257 TRF Tandem_Repeat 790426 790490 130 + . . scaffold257 GLEAN mRNA 817466 817517 0.999628 + . ID=CGI_10027933; scaffold257 TRF Tandem_Repeat 817466 817517 104 + . . scaffold257 GLEAN mRNA 829487 829712 1 + . ID=CGI_10027934; scaffold257 TRF Tandem_Repeat 829487 829712 177 + . . scaffold257 GLEAN mRNA 870856 871030 1 - . ID=CGI_10027936; scaffold257 TRF Tandem_Repeat 870856 871030 314 + . . scaffold257 GLEAN mRNA 1004784 1004829 0.640889 - . ID=CGI_10027939; scaffold257 TRF Tandem_Repeat 1004784 1004829 76 + . . scaffold257 GLEAN mRNA 1019721 1019810 0.640889 - . ID=CGI_10027939; scaffold257 TRF Tandem_Repeat 1019721 1019810 108 + . . scaffold257 GLEAN mRNA 1095030 1095104 0.999918 - . ID=CGI_10027941; scaffold257 WUBlastX LTR_Gypsy-Cigr 1095030 1095104 25 - . . scaffold257 GLEAN mRNA 1094933 1095085 0.999918 - . ID=CGI_10027941; scaffold257 WUBlastX LTR_Gypsy 1094933 1095085 50 - . . scaffold257 GLEAN mRNA 1095115 1097229 0.999918 - . ID=CGI_10027941; scaffold257 WUBlastX LTR_Gypsy 1095115 1097229 1527 - . . scaffold257 GLEAN mRNA 1094420 1094485 0.999918 - . ID=CGI_10027941; scaffold257 WUBlastX LTR_Gypsy 1094420 1094485 21 - . . scaffold257 GLEAN mRNA 1094723 1094959 0.999918 - . ID=CGI_10027941; scaffold257 WUBlastX LTR_Copia 1094723 1094959 59 - . . scaffold257 GLEAN mRNA 1097829 1098452 0.999918 - . ID=CGI_10027941; scaffold257 WUBlastX LTR_Gypsy 1097829 1098452 44 - . . scaffold257 GLEAN mRNA 1098261 1098950 0.999918 - . ID=CGI_10027941; scaffold257 WUBlastX LTR_Gypsy-Cigr 1098261 1098950 144 - . . scaffold257 GLEAN mRNA 1098111 1098782 0.999918 - . ID=CGI_10027941; scaffold257 WUBlastX LTR_Gypsy 1098111 1098782 150 - . . scaffold257 GLEAN mRNA 1097994 1098239 0.999918 - . ID=CGI_10027941; scaffold257 WUBlastX LTR_Copia 1097994 1098239 61 - . . scaffold257 GLEAN mRNA 1097629 1097850 0.999918 - . ID=CGI_10027941; scaffold257 WUBlastX LTR_Gypsy 1097629 1097850 53 - . . scaffold257 GLEAN mRNA 1095115 1097784 0.999918 - . ID=CGI_10027941; scaffold257 WUBlastX LTR_Gypsy 1095115 1097784 1400 - . . scaffold257 GLEAN mRNA 1306931 1306965 0.532165 + . ID=CGI_10027947; scaffold257 TRF Tandem_Repeat 1306931 1306965 54 + . . scaffold257 GLEAN mRNA 1309075 1309125 0.532165 + . ID=CGI_10027947; scaffold257 TRF Tandem_Repeat 1309075 1309125 70 + . . scaffold257 GLEAN mRNA 1309466 1309512 0.532165 + . ID=CGI_10027947; scaffold257 TRF Tandem_Repeat 1309466 1309512 78 + . . scaffold257 GLEAN mRNA 1310161 1311175 0.532165 + . ID=CGI_10027947; scaffold257 TRF Tandem_Repeat 1310161 1311175 969 + . . scaffold257 GLEAN mRNA 1355690 1355755 0.999995 - . ID=CGI_10027950; scaffold257 TRF Tandem_Repeat 1355690 1355755 132 + . . scaffold257 GLEAN mRNA 1362876 1363114 0.999995 - . ID=CGI_10027950; scaffold257 TRF Tandem_Repeat 1362876 1363114 361 + . . scaffold257 GLEAN mRNA 1365043 1365085 0.999995 - . ID=CGI_10027950; scaffold257 TRF Tandem_Repeat 1365043 1365085 86 + . . scaffold257 GLEAN mRNA 1367413 1367442 0.999995 - . ID=CGI_10027950; scaffold257 TRF Tandem_Repeat 1367413 1367442 60 + . . scaffold257 GLEAN mRNA 1369038 1369204 0.999995 - . ID=CGI_10027950; scaffold257 TRF Tandem_Repeat 1369038 1369204 124 + . . scaffold257 GLEAN mRNA 1394727 1395982 0.391683 + . ID=CGI_10027951; scaffold257 TRF Tandem_Repeat 1394727 1395982 1698 + . . scaffold257 GLEAN mRNA 1412568 1412605 0.821009 + . ID=CGI_10027952; scaffold257 TRF Tandem_Repeat 1412568 1412605 76 + . . scaffold257 GLEAN mRNA 1422850 1422979 1 - . ID=CGI_10027953; scaffold257 TRF Tandem_Repeat 1422850 1422979 242 + . . scaffold257 GLEAN mRNA 1440913 1440963 1 - . ID=CGI_10027954; scaffold257 TRF Tandem_Repeat 1440913 1440963 93 + . . scaffold257 GLEAN mRNA 1604480 1604971 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_DIRS 1604480 1604971 38 + . . scaffold257 GLEAN mRNA 1600286 1600366 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX DNA_TcMar-Marin 1600286 1600366 64 + . . scaffold257 GLEAN mRNA 1605399 1605533 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_DIRS 1605399 1605533 36 + . . scaffold257 GLEAN mRNA 1599791 1599871 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX DNA_TcMar-Marin 1599791 1599871 23 + . . scaffold257 GLEAN mRNA 1604995 1605258 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_DIRS 1604995 1605258 77 + . . scaffold257 GLEAN mRNA 1604992 1605198 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_DIRS 1604992 1605198 88 + . . scaffold257 GLEAN mRNA 1600109 1600189 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX DNA_TcMar-Marin 1600109 1600189 22 + . . scaffold257 GLEAN mRNA 1600280 1600438 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX DNA_TcMar-Marin 1600280 1600438 62 + . . scaffold257 GLEAN mRNA 1606452 1606601 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_Gypsy 1606452 1606601 35 + . . scaffold257 GLEAN mRNA 1605860 1606288 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_DIRS 1605860 1606288 204 + . . scaffold257 GLEAN mRNA 1606221 1606532 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_DIRS 1606221 1606532 112 + . . scaffold257 GLEAN mRNA 1607694 1607756 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_DIRS 1607694 1607756 30 + . . scaffold257 GLEAN mRNA 1607767 1608075 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_DIRS 1607767 1608075 77 + . . scaffold257 GLEAN mRNA 1607670 1607789 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_DIRS 1607670 1607789 23 + . . scaffold257 GLEAN mRNA 1607764 1607997 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_DIRS 1607764 1607997 96 + . . scaffold257 GLEAN mRNA 1608074 1608946 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_DIRS 1608074 1608946 208 + . . scaffold257 GLEAN mRNA 1606452 1606646 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_Gypsy 1606452 1606646 31 + . . scaffold257 GLEAN mRNA 1605445 1605858 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX LTR_DIRS 1605445 1605858 179 + . . scaffold77 GLEAN mRNA 1916 1941 0.999998 + . ID=CGI_10027963; scaffold77 TRF Tandem_Repeat 1916 1941 52 + . . scaffold77 GLEAN mRNA 30799 30842 0.544009 + . ID=CGI_10027964; scaffold77 TRF Tandem_Repeat 30799 30842 72 + . . scaffold77 GLEAN mRNA 32449 32582 0.544009 + . ID=CGI_10027964; scaffold77 TRF Tandem_Repeat 32449 32582 72 + . . scaffold77 GLEAN mRNA 32511 32633 0.544009 + . ID=CGI_10027964; scaffold77 TRF Tandem_Repeat 32511 32633 79 + . . scaffold77 GLEAN mRNA 83933 84288 0.999265 + . ID=CGI_10027965; scaffold77 TRF Tandem_Repeat 83933 84288 397 + . . scaffold77 GLEAN mRNA 85761 85962 0.999265 + . ID=CGI_10027965; scaffold77 TRF Tandem_Repeat 85761 85962 181 + . . scaffold77 GLEAN mRNA 85852 86221 0.999265 + . ID=CGI_10027965; scaffold77 TRF Tandem_Repeat 85852 86221 210 + . . scaffold77 GLEAN mRNA 96791 96928 0.416789 - . ID=CGI_10027966; scaffold77 WUBlastX DNA_TcMar-Tigge 96791 96928 40 - . . scaffold77 GLEAN mRNA 95306 96658 0.416789 - . ID=CGI_10027966; scaffold77 WUBlastX DNA_TcMar-Pogo 95306 96658 741 - . . scaffold77 GLEAN mRNA 155359 155414 1 + . ID=CGI_10027969; scaffold77 TRF Tandem_Repeat 155359 155414 112 + . . scaffold77 GLEAN mRNA 174894 175007 0.993583 + . ID=CGI_10027970; scaffold77 TRF Tandem_Repeat 174894 175007 174 + . . scaffold77 GLEAN mRNA 169180 171771 0.993583 + . ID=CGI_10027970; scaffold77 WUBlastX LINE_L1-Tx1 169180 171771 934 + . . scaffold77 GLEAN mRNA 168490 168567 0.993583 + . ID=CGI_10027970; scaffold77 WUBlastX LINE_CR1 168490 168567 28 + . . scaffold77 GLEAN mRNA 219809 219885 0.972932 + . ID=CGI_10027973; scaffold77 TRF Tandem_Repeat 219809 219885 73 + . . scaffold77 GLEAN mRNA 219809 219885 0.972932 + . ID=CGI_10027973; scaffold77 TRF Tandem_Repeat 219809 219885 82 + . . scaffold77 GLEAN mRNA 327320 327351 0.999376 + . ID=CGI_10027977; scaffold77 TRF Tandem_Repeat 327320 327351 64 + . . scaffold77 GLEAN mRNA 550680 550967 1 + . ID=CGI_10027984; scaffold77 WUBlastX LINE_L1 550680 550967 21 + . . scaffold77 GLEAN mRNA 634413 634637 0.481188 + . ID=CGI_10027986; scaffold77 WUBlastX LTR_Gypsy 634317 634637 40 + . . scaffold77 GLEAN mRNA 656125 657138 0.999581 + . ID=CGI_10027987; scaffold77 WUBlastX DNA_hAT-hATw 656125 657138 78 + . . scaffold77 GLEAN mRNA 655939 657138 0.999581 + . ID=CGI_10027987; scaffold77 WUBlastX DNA_hAT-hATw 655939 657138 25 + . . scaffold77 GLEAN mRNA 658763 658846 0.999581 + . ID=CGI_10027987; scaffold77 WUBlastX DNA_hAT-hATw 658763 658846 38 + . . scaffold77 GLEAN mRNA 657104 658756 0.999581 + . ID=CGI_10027987; scaffold77 WUBlastX DNA_hAT-hATw 657104 658756 651 + . . scaffold77 GLEAN mRNA 664176 664526 1 - . ID=CGI_10027988; scaffold77 WUBlastX LINE_L1-Tx1 664176 664526 39 + . . scaffold77 GLEAN mRNA 665488 665658 1 - . ID=CGI_10027988; scaffold77 WUBlastX LINE_L1-Tx1 665488 665658 73 + . . scaffold77 GLEAN mRNA 665636 665965 1 - . ID=CGI_10027988; scaffold77 WUBlastX LINE_L1-Tx1 665636 665965 57 + . . scaffold77 GLEAN mRNA 739089 739208 0.929793 - . ID=CGI_10027992; scaffold77 TRF Tandem_Repeat 739089 739208 186 + . . scaffold77 GLEAN mRNA 750352 750407 0.929793 - . ID=CGI_10027992; scaffold77 TRF Tandem_Repeat 750352 750407 94 + . . scaffold77 GLEAN mRNA 920718 920765 0.98826 + . ID=CGI_10028007; scaffold77 TRF Tandem_Repeat 920718 920765 96 + . . scaffold77 GLEAN mRNA 923942 923993 1 + . ID=CGI_10028008; scaffold77 TRF Tandem_Repeat 923942 923993 95 + . . scaffold77 GLEAN mRNA 932416 932488 1 + . ID=CGI_10028008; scaffold77 TRF Tandem_Repeat 932416 932488 146 + . . scaffold77 GLEAN mRNA 936668 937657 1 + . ID=CGI_10028008; scaffold77 TRF Tandem_Repeat 936668 937657 962 + . . scaffold77 GLEAN mRNA 938011 938049 1 + . ID=CGI_10028008; scaffold77 TRF Tandem_Repeat 938011 938049 69 + . . scaffold77 GLEAN mRNA 932416 932488 0.983193 - . ID=CGI_10028009; scaffold77 TRF Tandem_Repeat 932416 932488 146 + . . scaffold77 GLEAN mRNA 936668 937657 0.983193 - . ID=CGI_10028009; scaffold77 TRF Tandem_Repeat 936668 937657 962 + . . scaffold77 GLEAN mRNA 938011 938049 0.983193 - . ID=CGI_10028009; scaffold77 TRF Tandem_Repeat 938011 938049 69 + . . scaffold77 GLEAN mRNA 949391 949882 0.933688 - . ID=CGI_10028012; scaffold77 WUBlastX LINE_RTE-BovB 949391 949882 213 + . . scaffold77 GLEAN mRNA 949466 949882 0.933688 - . ID=CGI_10028012; scaffold77 WUBlastX LINE_RTE-BovB 949466 949882 367 + . . scaffold77 GLEAN mRNA 948472 948555 0.933688 - . ID=CGI_10028012; scaffold77 WUBlastX LINE_RTE-RTE 948472 948555 21 + . . scaffold77 GLEAN mRNA 949301 949780 0.933688 - . ID=CGI_10028012; scaffold77 WUBlastX LINE_L1 949301 949780 62 + . . scaffold77 GLEAN mRNA 950452 950529 0.933688 - . ID=CGI_10028012; scaffold77 TRF Tandem_Repeat 950452 950529 147 + . . scaffold77 GLEAN mRNA 954622 954700 0.933688 - . ID=CGI_10028012; scaffold77 TRF Tandem_Repeat 954622 954700 149 + . . scaffold77 GLEAN mRNA 959901 960446 0.933688 - . ID=CGI_10028012; scaffold77 WUBlastX DNA_Zator 959901 960446 147 - . . scaffold77 GLEAN mRNA 949885 950397 0.933688 - . ID=CGI_10028012; scaffold77 WUBlastX LINE_RTE-BovB 949885 950397 357 + . . scaffold77 GLEAN mRNA 959901 960446 1 + . ID=CGI_10028013; scaffold77 WUBlastX DNA_Zator 959901 960446 147 - . . scaffold77 GLEAN mRNA 960576 960713 1 + . ID=CGI_10028013; scaffold77 WUBlastX DNA_Zator 960576 960713 75 - . . scaffold77 GLEAN mRNA 960825 961166 1 + . ID=CGI_10028013; scaffold77 WUBlastX DNA_Zator 960825 961166 20 - . . scaffold77 GLEAN mRNA 999157 999419 0.910146 + . ID=CGI_10028015; scaffold77 TRF Tandem_Repeat 999157 999419 400 + . . scaffold77 GLEAN mRNA 1014400 1014720 0.901774 + . ID=CGI_10028016; scaffold77 TRF Tandem_Repeat 1014400 1014720 471 + . . scaffold77 GLEAN mRNA 1022334 1022391 0.901774 + . ID=CGI_10028016; scaffold77 TRF Tandem_Repeat 1022334 1022391 116 + . . scaffold77 GLEAN mRNA 1030591 1033746 0.999911 - . ID=CGI_10028017; scaffold77 WUBlastX LINE_RTE-X 1030591 1033860 926 - . . scaffold77 GLEAN mRNA 1055775 1056540 1 + . ID=CGI_10028018; scaffold77 TRF Tandem_Repeat 1055775 1056540 685 + . . scaffold77 GLEAN mRNA 1055822 1056540 1 + . ID=CGI_10028018; scaffold77 TRF Tandem_Repeat 1055822 1056540 640 + . . scaffold77 GLEAN mRNA 1055918 1056526 1 + . ID=CGI_10028018; scaffold77 TRF Tandem_Repeat 1055918 1056526 280 + . . scaffold77 GLEAN mRNA 1055798 1056509 1 + . ID=CGI_10028018; scaffold77 TRF Tandem_Repeat 1055798 1056509 778 + . . scaffold77 GLEAN mRNA 1060936 1061158 1 + . ID=CGI_10028018; scaffold77 TRF Tandem_Repeat 1060936 1061158 272 + . . scaffold77 GLEAN mRNA 1072217 1072262 0.933897 + . ID=CGI_10028019; scaffold77 TRF Tandem_Repeat 1072217 1072262 85 + . . scaffold77 GLEAN mRNA 1075524 1075580 0.933897 + . ID=CGI_10028019; scaffold77 TRF Tandem_Repeat 1075524 1075580 114 + . . scaffold77 GLEAN mRNA 1079997 1080041 0.933897 + . ID=CGI_10028019; scaffold77 TRF Tandem_Repeat 1079997 1080041 90 + . . scaffold77 GLEAN mRNA 1092529 1092581 0.933897 + . ID=CGI_10028019; scaffold77 TRF Tandem_Repeat 1092529 1092581 88 + . . scaffold77 GLEAN mRNA 1092529 1092584 0.933897 + . ID=CGI_10028019; scaffold77 TRF Tandem_Repeat 1092529 1092584 58 + . . scaffold77 GLEAN mRNA 1092535 1092584 0.933897 + . ID=CGI_10028019; scaffold77 TRF Tandem_Repeat 1092535 1092584 73 + . . scaffold77 GLEAN mRNA 1096521 1096703 0.933897 + . ID=CGI_10028019; scaffold77 WUBlastX DNA_Zator 1096521 1096703 52 - . . scaffold77 GLEAN mRNA 1112196 1112375 0.545449 + . ID=CGI_10028021; scaffold77 TRF Tandem_Repeat 1112196 1112375 238 + . . scaffold77 GLEAN mRNA 1112196 1112484 0.545449 + . ID=CGI_10028021; scaffold77 TRF Tandem_Repeat 1112196 1112484 258 + . . scaffold77 GLEAN mRNA 1112392 1112483 0.545449 + . ID=CGI_10028021; scaffold77 TRF Tandem_Repeat 1112392 1112483 98 + . . scaffold77 GLEAN mRNA 1120237 1120551 0.545449 + . ID=CGI_10028021; scaffold77 WUBlastX LINE_L1-Tx1 1120237 1120551 56 - . . scaffold77 GLEAN mRNA 1120297 1120536 0.545449 + . ID=CGI_10028021; scaffold77 WUBlastX LINE_L1-Tx1 1120297 1120536 57 - . . scaffold77 GLEAN mRNA 1120544 1120975 0.545449 + . ID=CGI_10028021; scaffold77 WUBlastX LINE_L1-Tx1 1120544 1120975 90 - . . scaffold77 GLEAN mRNA 1189326 1190206 0.99924 - . ID=CGI_10028026; scaffold77 TRF Tandem_Repeat 1189326 1190206 1146 + . . scaffold77 GLEAN mRNA 1227828 1227868 0.999676 + . ID=CGI_10028027; scaffold77 TRF Tandem_Repeat 1227828 1227868 82 + . . scaffold77 GLEAN mRNA 1232244 1232835 0.999676 + . ID=CGI_10028027; scaffold77 TRF Tandem_Repeat 1232244 1232835 659 + . . scaffold77 GLEAN mRNA 1232244 1232837 0.999676 + . ID=CGI_10028027; scaffold77 TRF Tandem_Repeat 1232244 1232837 668 + . . scaffold77 GLEAN mRNA 1277799 1277939 0.443464 + . ID=CGI_10028030; scaffold77 TRF Tandem_Repeat 1277799 1277939 239 + . . scaffold77 GLEAN mRNA 1283374 1283986 0.443464 + . ID=CGI_10028030; scaffold77 TRF Tandem_Repeat 1283374 1283986 838 + . . scaffold77 GLEAN mRNA 1299284 1299387 0.999074 - . ID=CGI_10028031; scaffold77 TRF Tandem_Repeat 1299284 1299387 84 + . . scaffold77 GLEAN mRNA 1300328 1300849 0.999074 - . ID=CGI_10028031; scaffold77 WUBlastX LINE_CR1 1300328 1300849 34 + . . scaffold77 GLEAN mRNA 1332369 1332408 0.983733 + . ID=CGI_10028034; scaffold77 TRF Tandem_Repeat 1332369 1332408 80 + . . scaffold77 GLEAN mRNA 1334944 1334987 0.983733 + . ID=CGI_10028034; scaffold77 TRF Tandem_Repeat 1334944 1334987 88 + . . scaffold77 GLEAN mRNA 1340721 1340748 0.983733 + . ID=CGI_10028034; scaffold77 TRF Tandem_Repeat 1340721 1340748 56 + . . scaffold77 GLEAN mRNA 1344043 1345186 0.983733 + . ID=CGI_10028034; scaffold77 TRF Tandem_Repeat 1344043 1345186 1696 + . . scaffold77 GLEAN mRNA 1343379 1343632 0.983733 + . ID=CGI_10028034; scaffold77 TRF Tandem_Repeat 1343379 1343632 140 + . . scaffold77 GLEAN mRNA 1332369 1332408 0.516784 - . ID=CGI_10028035; scaffold77 TRF Tandem_Repeat 1332369 1332408 80 + . . scaffold77 GLEAN mRNA 1334944 1334987 0.516784 - . ID=CGI_10028035; scaffold77 TRF Tandem_Repeat 1334944 1334987 88 + . . scaffold77 GLEAN mRNA 1453962 1455050 0.401661 + . ID=CGI_10028040; scaffold77 WUBlastX LTR_Gypsy 1453962 1455050 164 - . . scaffold77 GLEAN mRNA 1453959 1454867 0.401661 + . ID=CGI_10028040; scaffold77 WUBlastX LTR_Gypsy 1453959 1454867 232 - . . scaffold77 GLEAN mRNA 1454484 1455152 0.401661 + . ID=CGI_10028040; scaffold77 WUBlastX LTR_Gypsy 1454484 1455152 128 - . . scaffold77 GLEAN mRNA 1453953 1454636 0.401661 + . ID=CGI_10028040; scaffold77 WUBlastX LTR_Gypsy 1453953 1454636 272 - . . scaffold77 GLEAN mRNA 1545668 1546586 0.732776 + . ID=CGI_10028044; scaffold77 TRF Tandem_Repeat 1545668 1546586 557 + . . scaffold77 GLEAN mRNA 1545675 1546586 0.732776 + . ID=CGI_10028044; scaffold77 TRF Tandem_Repeat 1545675 1546586 845 + . . scaffold77 GLEAN mRNA 1552582 1553537 0.999999 - . ID=CGI_10028046; scaffold77 TRF Tandem_Repeat 1552582 1553537 1415 + . . scaffold77 GLEAN mRNA 1562322 1562792 0.999999 - . ID=CGI_10028046; scaffold77 TRF Tandem_Repeat 1562322 1562792 574 + . . scaffold77 GLEAN mRNA 1580111 1580475 1 - . ID=CGI_10028048; scaffold77 TRF Tandem_Repeat 1580111 1580475 541 + . . scaffold77 GLEAN mRNA 1580111 1580522 1 - . ID=CGI_10028048; scaffold77 TRF Tandem_Repeat 1580111 1580522 545 + . . scaffold77 GLEAN mRNA 1580143 1580218 1 - . ID=CGI_10028048; scaffold77 TRF Tandem_Repeat 1580143 1580218 69 + . . scaffold77 GLEAN mRNA 1580143 1580262 1 - . ID=CGI_10028048; scaffold77 TRF Tandem_Repeat 1580143 1580262 66 + . . scaffold77 GLEAN mRNA 1580111 1580522 1 - . ID=CGI_10028048; scaffold77 TRF Tandem_Repeat 1580111 1580522 545 + . . scaffold77 GLEAN mRNA 1582598 1583199 1 - . ID=CGI_10028048; scaffold77 TRF Tandem_Repeat 1582598 1583199 970 + . . scaffold77 GLEAN mRNA 1583405 1583880 1 - . ID=CGI_10028048; scaffold77 TRF Tandem_Repeat 1583405 1583880 781 + . . scaffold77 GLEAN mRNA 1585503 1585551 1 - . ID=CGI_10028048; scaffold77 TRF Tandem_Repeat 1585503 1585551 64 + . . scaffold77 GLEAN mRNA 1585503 1585545 1 - . ID=CGI_10028048; scaffold77 TRF Tandem_Repeat 1585503 1585545 68 + . . scaffold77 GLEAN mRNA 1596953 1597213 1 - . ID=CGI_10028048; scaffold77 WUBlastX LINE_RTE-BovB 1596953 1597213 162 + . . scaffold337 GLEAN mRNA 32618 32749 0.967748 - . ID=CGI_10028049; scaffold337 TRF Tandem_Repeat 32618 32749 250 + . . scaffold337 GLEAN mRNA 38261 38356 0.967748 - . ID=CGI_10028049; scaffold337 WUBlastX DNA_TcMar-Tc1 38261 38356 41 - . . scaffold337 GLEAN mRNA 38353 38463 0.967748 - . ID=CGI_10028049; scaffold337 WUBlastX DNA_TcMar-Tc1 38353 38463 61 - . . scaffold337 GLEAN mRNA 51205 51273 0.967748 - . ID=CGI_10028049; scaffold337 TRF Tandem_Repeat 51205 51273 111 + . . scaffold337 GLEAN mRNA 57761 57810 0.967748 - . ID=CGI_10028049; scaffold337 TRF Tandem_Repeat 57761 57810 73 + . . scaffold337 GLEAN mRNA 270538 270598 0.996603 - . ID=CGI_10028051; scaffold337 TRF Tandem_Repeat 270538 270598 59 + . . scaffold337 GLEAN mRNA 293923 293978 0.789546 + . ID=CGI_10028052; scaffold337 TRF Tandem_Repeat 293923 293978 112 + . . scaffold337 GLEAN mRNA 301203 301236 0.789546 + . ID=CGI_10028052; scaffold337 TRF Tandem_Repeat 301203 301236 68 + . . scaffold337 GLEAN mRNA 314214 314404 0.58535 - . ID=CGI_10028053; scaffold337 TRF Tandem_Repeat 314214 314404 129 + . . scaffold337 GLEAN mRNA 315270 315323 0.58535 - . ID=CGI_10028053; scaffold337 TRF Tandem_Repeat 315270 315323 65 + . . scaffold337 GLEAN mRNA 398038 398118 0.151687 - . ID=CGI_10028058; scaffold337 TRF Tandem_Repeat 398038 398118 112 + . . scaffold337 GLEAN mRNA 400422 400459 0.151687 - . ID=CGI_10028058; scaffold337 TRF Tandem_Repeat 400422 400459 67 + . . scaffold337 GLEAN mRNA 403783 403828 0.151687 - . ID=CGI_10028058; scaffold337 TRF Tandem_Repeat 403783 403828 92 + . . scaffold337 GLEAN mRNA 431084 431117 0.625753 + . ID=CGI_10028063; scaffold337 TRF Tandem_Repeat 431084 431117 59 + . . scaffold337 GLEAN mRNA 431188 431221 0.625753 + . ID=CGI_10028063; scaffold337 TRF Tandem_Repeat 431188 431221 68 + . . scaffold337 GLEAN mRNA 431082 431515 0.625753 + . ID=CGI_10028063; scaffold337 TRF Tandem_Repeat 431082 431515 726 + . . scaffold337 GLEAN mRNA 431292 431323 0.625753 + . ID=CGI_10028063; scaffold337 TRF Tandem_Repeat 431292 431323 64 + . . scaffold337 GLEAN mRNA 431086 431515 0.625753 + . ID=CGI_10028063; scaffold337 TRF Tandem_Repeat 431086 431515 728 + . . scaffold337 GLEAN mRNA 431490 431515 0.625753 + . ID=CGI_10028063; scaffold337 TRF Tandem_Repeat 431490 431515 52 + . . scaffold337 GLEAN mRNA 433707 434661 0.625753 + . ID=CGI_10028063; scaffold337 TRF Tandem_Repeat 433707 434661 986 + . . scaffold337 GLEAN mRNA 445848 445919 0.999995 + . ID=CGI_10028064; scaffold337 TRF Tandem_Repeat 445848 445919 144 + . . scaffold337 GLEAN mRNA 449499 449851 0.776768 - . ID=CGI_10028066; scaffold337 TRF Tandem_Repeat 449499 449851 502 + . . scaffold337 GLEAN mRNA 450932 450987 0.776768 - . ID=CGI_10028066; scaffold337 TRF Tandem_Repeat 450932 450987 112 + . . scaffold337 GLEAN mRNA 465209 465280 0.776768 - . ID=CGI_10028066; scaffold337 TRF Tandem_Repeat 465209 465280 144 + . . scaffold337 GLEAN mRNA 469914 469948 0.776768 - . ID=CGI_10028066; scaffold337 TRF Tandem_Repeat 469914 469948 61 + . . scaffold337 GLEAN mRNA 490375 490878 0.56595 + . ID=CGI_10028067; scaffold337 WUBlastX LTR_Gypsy 490375 490878 46 - . . scaffold337 GLEAN mRNA 489176 489748 0.56595 + . ID=CGI_10028067; scaffold337 WUBlastX LTR_Gypsy 489176 489748 161 - . . scaffold337 GLEAN mRNA 490136 490378 0.56595 + . ID=CGI_10028067; scaffold337 WUBlastX LTR_Gypsy 490136 490378 146 - . . scaffold337 GLEAN mRNA 489218 490069 0.56595 + . ID=CGI_10028067; scaffold337 WUBlastX LTR_Gypsy 489218 490069 150 - . . scaffold337 GLEAN mRNA 489977 490360 0.56595 + . ID=CGI_10028067; scaffold337 WUBlastX LTR_Gypsy 489977 490360 115 - . . scaffold337 GLEAN mRNA 490375 490767 0.56595 + . ID=CGI_10028067; scaffold337 WUBlastX LTR_Gypsy 490375 490767 91 - . . scaffold337 GLEAN mRNA 490375 490632 0.56595 + . ID=CGI_10028067; scaffold337 WUBlastX LTR_Gypsy 490375 490632 151 - . . scaffold337 GLEAN mRNA 498062 498097 0.56595 + . ID=CGI_10028067; scaffold337 TRF Tandem_Repeat 498062 498097 72 + . . scaffold337 GLEAN mRNA 505351 505382 0.56595 + . ID=CGI_10028067; scaffold337 TRF Tandem_Repeat 505351 505382 64 + . . scaffold337 GLEAN mRNA 535440 535485 0.427566 + . ID=CGI_10028069; scaffold337 TRF Tandem_Repeat 535440 535485 65 + . . scaffold337 GLEAN mRNA 537221 537697 0.427566 + . ID=CGI_10028069; scaffold337 TRF Tandem_Repeat 537221 537697 746 + . . scaffold337 GLEAN mRNA 537329 537433 0.427566 + . ID=CGI_10028069; scaffold337 TRF Tandem_Repeat 537329 537433 57 + . . scaffold337 GLEAN mRNA 538122 538350 0.427566 + . ID=CGI_10028069; scaffold337 TRF Tandem_Repeat 538122 538350 305 + . . scaffold337 GLEAN mRNA 539971 540056 0.427566 + . ID=CGI_10028069; scaffold337 TRF Tandem_Repeat 539971 540056 109 + . . scaffold337 GLEAN mRNA 541572 541725 0.427566 + . ID=CGI_10028069; scaffold337 TRF Tandem_Repeat 541572 541725 272 + . . scaffold337 GLEAN mRNA 540070 541038 0.427566 + . ID=CGI_10028069; scaffold337 TRF Tandem_Repeat 540070 541038 1697 + . . scaffold337 GLEAN mRNA 564925 564968 1 - . ID=CGI_10028070; scaffold337 TRF Tandem_Repeat 564925 564968 61 + . . scaffold337 GLEAN mRNA 567181 567228 1 - . ID=CGI_10028070; scaffold337 TRF Tandem_Repeat 567181 567228 96 + . . scaffold337 GLEAN mRNA 567314 567373 1 - . ID=CGI_10028070; scaffold337 TRF Tandem_Repeat 567314 567373 120 + . . scaffold337 GLEAN mRNA 570423 570971 1 - . ID=CGI_10028070; scaffold337 WUBlastX LINE_RTE-BovB 570423 570971 102 + . . scaffold337 GLEAN mRNA 570716 571057 1 - . ID=CGI_10028070; scaffold337 WUBlastX LINE_RTE-BovB 570716 571057 64 + . . scaffold337 GLEAN mRNA 570106 570582 1 - . ID=CGI_10028070; scaffold337 WUBlastX LINE_RTE-BovB 570106 570582 28 + . . scaffold337 GLEAN mRNA 570716 571153 1 - . ID=CGI_10028070; scaffold337 WUBlastX LINE_RTE-BovB 570716 571153 42 + . . scaffold337 GLEAN mRNA 576971 577025 1 - . ID=CGI_10028070; scaffold337 TRF Tandem_Repeat 576971 577025 110 + . . scaffold337 GLEAN mRNA 598525 598807 0.990668 - . ID=CGI_10028071; scaffold337 TRF Tandem_Repeat 598525 598807 449 + . . scaffold337 GLEAN mRNA 599970 600222 0.990668 - . ID=CGI_10028071; scaffold337 TRF Tandem_Repeat 599970 600222 183 + . . scaffold337 GLEAN mRNA 599964 600223 0.990668 - . ID=CGI_10028071; scaffold337 TRF Tandem_Repeat 599964 600223 376 + . . scaffold337 GLEAN mRNA 602661 602785 0.990668 - . ID=CGI_10028071; scaffold337 TRF Tandem_Repeat 602661 602785 223 + . . scaffold337 GLEAN mRNA 616245 616320 0.990668 - . ID=CGI_10028071; scaffold337 TRF Tandem_Repeat 616245 616320 73 + . . scaffold337 GLEAN mRNA 618055 618098 0.990668 - . ID=CGI_10028071; scaffold337 TRF Tandem_Repeat 618055 618098 54 + . . scaffold337 GLEAN mRNA 621923 622272 0.990668 - . ID=CGI_10028071; scaffold337 TRF Tandem_Repeat 621923 622272 510 + . . scaffold337 GLEAN mRNA 624173 624326 0.990668 - . ID=CGI_10028071; scaffold337 TRF Tandem_Repeat 624173 624326 74 + . . scaffold337 GLEAN mRNA 624413 624438 0.990668 - . ID=CGI_10028071; scaffold337 TRF Tandem_Repeat 624413 624438 52 + . . scaffold337 GLEAN mRNA 618055 618098 0.999366 + . ID=CGI_10028072; scaffold337 TRF Tandem_Repeat 618055 618098 54 + . . scaffold337 GLEAN mRNA 653552 653577 1 - . ID=CGI_10028074; scaffold337 TRF Tandem_Repeat 653552 653577 52 + . . scaffold337 GLEAN mRNA 662497 662853 0.813146 - . ID=CGI_10028075; scaffold337 TRF Tandem_Repeat 662497 662853 300 + . . scaffold337 GLEAN mRNA 713585 713615 0.611485 - . ID=CGI_10028076; scaffold337 TRF Tandem_Repeat 713585 713615 62 + . . scaffold337 GLEAN mRNA 764982 765010 0.932746 - . ID=CGI_10028082; scaffold337 TRF Tandem_Repeat 764982 765010 51 + . . scaffold337 GLEAN mRNA 769569 769599 0.932746 - . ID=CGI_10028082; scaffold337 TRF Tandem_Repeat 769569 769599 62 + . . scaffold337 GLEAN mRNA 769810 769862 0.932746 - . ID=CGI_10028082; scaffold337 TRF Tandem_Repeat 769810 769862 99 + . . scaffold337 GLEAN mRNA 764982 765010 0.999676 + . ID=CGI_10028083; scaffold337 TRF Tandem_Repeat 764982 765010 51 + . . scaffold337 GLEAN mRNA 769569 769599 0.999676 + . ID=CGI_10028083; scaffold337 TRF Tandem_Repeat 769569 769599 62 + . . scaffold337 GLEAN mRNA 769810 769862 0.999676 + . ID=CGI_10028083; scaffold337 TRF Tandem_Repeat 769810 769862 99 + . . scaffold337 GLEAN mRNA 781016 781053 0.999676 + . ID=CGI_10028083; scaffold337 TRF Tandem_Repeat 781016 781053 67 + . . scaffold337 GLEAN mRNA 781051 781075 0.999676 + . ID=CGI_10028083; scaffold337 TRF Tandem_Repeat 781051 781075 50 + . . scaffold337 GLEAN mRNA 785915 785962 0.999676 + . ID=CGI_10028083; scaffold337 TRF Tandem_Repeat 785915 785962 51 + . . scaffold337 GLEAN mRNA 786298 786357 0.999676 + . ID=CGI_10028083; scaffold337 TRF Tandem_Repeat 786298 786357 111 + . . scaffold337 GLEAN mRNA 788147 788182 0.999676 + . ID=CGI_10028083; scaffold337 TRF Tandem_Repeat 788147 788182 63 + . . scaffold337 GLEAN mRNA 788358 788416 0.999676 + . ID=CGI_10028083; scaffold337 TRF Tandem_Repeat 788358 788416 109 + . . scaffold337 GLEAN mRNA 807353 807453 0.733503 - . ID=CGI_10028084; scaffold337 TRF Tandem_Repeat 807353 807453 100 + . . scaffold337 GLEAN mRNA 807353 807453 0.733503 - . ID=CGI_10028084; scaffold337 TRF Tandem_Repeat 807353 807453 100 + . . scaffold337 GLEAN mRNA 829129 829177 0.523107 + . ID=CGI_10028085; scaffold337 TRF Tandem_Repeat 829129 829177 89 + . . scaffold337 GLEAN mRNA 915075 915239 0.999981 - . ID=CGI_10028087; scaffold337 WUBlastX RC_Helitron 915075 915239 46 - . . scaffold337 GLEAN mRNA 915301 916155 0.999981 - . ID=CGI_10028087; scaffold337 WUBlastX RC_Helitron 915301 916155 604 - . . scaffold337 GLEAN mRNA 915111 915239 0.999981 - . ID=CGI_10028087; scaffold337 WUBlastX RC_Helitron 915111 915239 76 - . . scaffold337 GLEAN mRNA 916100 916213 0.999981 - . ID=CGI_10028087; scaffold337 WUBlastX RC_Helitron 916100 916213 138 - . . scaffold337 GLEAN mRNA 915114 915299 0.999981 - . ID=CGI_10028087; scaffold337 WUBlastX DNA_Helitron 915114 915299 74 - . . scaffold337 GLEAN mRNA 919941 919974 0.999981 - . ID=CGI_10028087; scaffold337 TRF Tandem_Repeat 919941 919974 50 + . . scaffold337 GLEAN mRNA 920168 920255 0.999981 - . ID=CGI_10028087; scaffold337 TRF Tandem_Repeat 920168 920255 126 + . . scaffold337 GLEAN mRNA 1020383 1020434 0.999999 + . ID=CGI_10028089; scaffold337 TRF Tandem_Repeat 1020383 1020434 104 + . . scaffold337 GLEAN mRNA 1060094 1060166 0.758954 + . ID=CGI_10028091; scaffold337 TRF Tandem_Repeat 1060094 1060166 146 + . . scaffold337 GLEAN mRNA 1068100 1068145 0.758954 + . ID=CGI_10028091; scaffold337 TRF Tandem_Repeat 1068100 1068145 92 + . . scaffold337 GLEAN mRNA 1075359 1075427 0.758954 + . ID=CGI_10028091; scaffold337 TRF Tandem_Repeat 1075359 1075427 129 + . . scaffold337 GLEAN mRNA 1077678 1077782 0.758954 + . ID=CGI_10028091; scaffold337 TRF Tandem_Repeat 1077678 1077782 158 + . . scaffold337 GLEAN mRNA 1079550 1079600 0.758954 + . ID=CGI_10028091; scaffold337 TRF Tandem_Repeat 1079550 1079600 102 + . . scaffold337 GLEAN mRNA 1078524 1078856 0.758954 + . ID=CGI_10028091; scaffold337 WUBlastX LINE_L1 1078524 1078856 85 + . . scaffold337 GLEAN mRNA 1080399 1080827 0.758954 + . ID=CGI_10028091; scaffold337 WUBlastX LINE_L1-Tx1 1080399 1080827 84 + . . scaffold337 GLEAN mRNA 1078581 1078859 0.758954 + . ID=CGI_10028091; scaffold337 WUBlastX LINE_L1-Tx1 1078581 1078859 148 + . . scaffold337 GLEAN mRNA 1082959 1083021 0.758954 + . ID=CGI_10028091; scaffold337 WUBlastX LINE_L1-Tx1 1082959 1083969 41 + . . scaffold337 GLEAN mRNA 1080474 1082891 0.758954 + . ID=CGI_10028091; scaffold337 WUBlastX LINE_L1-Tx1 1080474 1082891 770 + . . scaffold337 GLEAN mRNA 1115364 1115641 0.999841 + . ID=CGI_10028093; scaffold337 TRF Tandem_Repeat 1115364 1115641 285 + . . scaffold337 GLEAN mRNA 1115364 1115633 0.999841 + . ID=CGI_10028093; scaffold337 TRF Tandem_Repeat 1115364 1115633 190 + . . scaffold337 GLEAN mRNA 1122802 1123215 0.999826 - . ID=CGI_10028094; scaffold337 TRF Tandem_Repeat 1122802 1123215 272 + . . scaffold337 GLEAN mRNA 1122802 1123215 0.999826 - . ID=CGI_10028094; scaffold337 TRF Tandem_Repeat 1122802 1123215 395 + . . scaffold337 GLEAN mRNA 1133634 1133684 0.999826 - . ID=CGI_10028094; scaffold337 TRF Tandem_Repeat 1133634 1133684 66 + . . scaffold337 GLEAN mRNA 1200544 1200602 0.999998 - . ID=CGI_10028098; scaffold337 TRF Tandem_Repeat 1200544 1200602 118 + . . scaffold337 GLEAN mRNA 1270567 1270606 0.999242 - . ID=CGI_10028103; scaffold337 TRF Tandem_Repeat 1270567 1270606 80 + . . scaffold337 GLEAN mRNA 1295533 1296049 0.608104 + . ID=CGI_10028104; scaffold337 TRF Tandem_Repeat 1295533 1296049 800 + . . scaffold337 GLEAN mRNA 1296202 1296245 0.608104 + . ID=CGI_10028104; scaffold337 TRF Tandem_Repeat 1296202 1296245 88 + . . scaffold337 GLEAN mRNA 1393496 1393576 0.553087 + . ID=CGI_10028111; scaffold337 TRF Tandem_Repeat 1393496 1393576 135 + . . scaffold337 GLEAN mRNA 1393500 1393658 0.553087 + . ID=CGI_10028111; scaffold337 TRF Tandem_Repeat 1393500 1393658 105 + . . scaffold337 GLEAN mRNA 1393496 1393670 0.553087 + . ID=CGI_10028111; scaffold337 TRF Tandem_Repeat 1393496 1393670 126 + . . scaffold337 GLEAN mRNA 1443907 1443937 0.999958 - . ID=CGI_10028114; scaffold337 TRF Tandem_Repeat 1443907 1443937 62 + . . scaffold337 GLEAN mRNA 1446248 1446301 0.999958 - . ID=CGI_10028114; scaffold337 TRF Tandem_Repeat 1446248 1446301 108 + . . scaffold337 GLEAN mRNA 1486998 1487022 0.608962 - . ID=CGI_10028119; scaffold337 TRF Tandem_Repeat 1486998 1487022 50 + . . scaffold337 GLEAN mRNA 1484005 1484427 0.608962 - . ID=CGI_10028119; scaffold337 WUBlastX LTR_Pao 1484005 1484427 92 + . . scaffold337 GLEAN mRNA 1484005 1484427 0.740205 + . ID=CGI_10028120; scaffold337 WUBlastX LTR_Pao 1484005 1484427 92 + . . scaffold337 GLEAN mRNA 1497907 1497959 0.999996 - . ID=CGI_10028121; scaffold337 TRF Tandem_Repeat 1497907 1497959 106 + . . scaffold337 GLEAN mRNA 1528039 1528234 0.999415 - . ID=CGI_10028125; scaffold337 TRF Tandem_Repeat 1528039 1528234 293 + . . scaffold337 GLEAN mRNA 1534096 1534725 0.999415 - . ID=CGI_10028125; scaffold337 TRF Tandem_Repeat 1534096 1534725 761 + . . scaffold337 GLEAN mRNA 1534730 1534780 0.999415 - . ID=CGI_10028125; scaffold337 TRF Tandem_Repeat 1534730 1534780 57 + . . scaffold337 GLEAN mRNA 1534730 1534767 0.999415 - . ID=CGI_10028125; scaffold337 TRF Tandem_Repeat 1534730 1534767 58 + . . scaffold337 GLEAN mRNA 1537753 1538370 0.999415 - . ID=CGI_10028125; scaffold337 TRF Tandem_Repeat 1537753 1538370 1128 + . . scaffold337 GLEAN mRNA 1537753 1538677 0.999415 - . ID=CGI_10028125; scaffold337 TRF Tandem_Repeat 1537753 1538677 1608 + . . scaffold337 GLEAN mRNA 1538369 1538677 0.999415 - . ID=CGI_10028125; scaffold337 TRF Tandem_Repeat 1538369 1538677 575 + . . scaffold86 GLEAN mRNA 44133 44873 0.943261 + . ID=CGI_10028132; scaffold86 WUBlastX LTR_Gypsy 44133 44873 88 - . . scaffold86 GLEAN mRNA 56335 56530 0.811579 - . ID=CGI_10028133; scaffold86 TRF Tandem_Repeat 56335 56530 183 + . . scaffold86 GLEAN mRNA 61247 61292 0.811579 - . ID=CGI_10028133; scaffold86 TRF Tandem_Repeat 61247 61292 60 + . . scaffold86 GLEAN mRNA 61245 61293 0.811579 - . ID=CGI_10028133; scaffold86 TRF Tandem_Repeat 61245 61293 73 + . . scaffold86 GLEAN mRNA 93942 94106 0.657894 - . ID=CGI_10028134; scaffold86 TRF Tandem_Repeat 93942 94106 204 + . . scaffold86 GLEAN mRNA 93941 94106 0.657894 - . ID=CGI_10028134; scaffold86 TRF Tandem_Repeat 93941 94106 226 + . . scaffold86 GLEAN mRNA 94229 94496 0.657894 - . ID=CGI_10028134; scaffold86 TRF Tandem_Repeat 94229 94496 430 + . . scaffold86 GLEAN mRNA 112606 112642 0.951388 - . ID=CGI_10028135; scaffold86 TRF Tandem_Repeat 112606 112642 74 + . . scaffold86 GLEAN mRNA 116710 116766 1 - . ID=CGI_10028136; scaffold86 TRF Tandem_Repeat 116710 116766 57 + . . scaffold86 GLEAN mRNA 116707 116766 1 - . ID=CGI_10028136; scaffold86 TRF Tandem_Repeat 116704 116766 60 + . . scaffold86 GLEAN mRNA 150576 150815 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 150576 150815 86 - . . scaffold86 GLEAN mRNA 151506 151718 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 151506 151718 68 - . . scaffold86 GLEAN mRNA 149346 149534 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 149346 149534 51 + . . scaffold86 GLEAN mRNA 149896 150054 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 149896 150054 77 + . . scaffold86 GLEAN mRNA 151157 151348 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 151157 151348 47 - . . scaffold86 GLEAN mRNA 151163 151312 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 151163 151312 56 - . . scaffold86 GLEAN mRNA 149857 150057 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 149857 150057 69 + . . scaffold86 GLEAN mRNA 151789 151899 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 151789 151899 29 - . . scaffold86 GLEAN mRNA 152021 152110 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 152021 152110 37 - . . scaffold86 GLEAN mRNA 152706 153047 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 152706 153047 137 - . . scaffold86 GLEAN mRNA 152250 152492 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 152250 152492 118 - . . scaffold86 GLEAN mRNA 152739 153188 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 152739 153188 38 - . . scaffold86 GLEAN mRNA 158192 158230 0.999926 + . ID=CGI_10028140; scaffold86 TRF Tandem_Repeat 158192 158230 71 + . . scaffold86 GLEAN mRNA 159785 159973 0.999926 + . ID=CGI_10028140; scaffold86 TRF Tandem_Repeat 159785 159973 193 + . . scaffold86 GLEAN mRNA 167235 167335 0.999926 + . ID=CGI_10028140; scaffold86 TRF Tandem_Repeat 167235 167335 64 + . . scaffold86 GLEAN mRNA 167408 167831 0.999926 + . ID=CGI_10028140; scaffold86 TRF Tandem_Repeat 167408 167831 200 + . . scaffold86 GLEAN mRNA 167412 167587 0.999926 + . ID=CGI_10028140; scaffold86 TRF Tandem_Repeat 167412 167587 157 + . . scaffold86 GLEAN mRNA 168122 168448 0.999926 + . ID=CGI_10028140; scaffold86 TRF Tandem_Repeat 168122 168448 308 + . . scaffold86 GLEAN mRNA 168122 168448 0.999926 + . ID=CGI_10028140; scaffold86 TRF Tandem_Repeat 168122 168448 370 + . . scaffold86 GLEAN mRNA 189297 189686 0.441413 - . ID=CGI_10028141; scaffold86 TRF Tandem_Repeat 189297 189686 512 + . . scaffold86 GLEAN mRNA 190112 190431 0.441413 - . ID=CGI_10028141; scaffold86 TRF Tandem_Repeat 190112 190431 385 + . . scaffold86 GLEAN mRNA 205361 205621 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LTR_Pao 205361 205621 257 + . . scaffold86 GLEAN mRNA 200986 205353 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LTR_Pao 200986 205353 2885 + . . scaffold86 GLEAN mRNA 205367 205690 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LTR_Pao 205367 205690 102 + . . scaffold86 GLEAN mRNA 200791 201822 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LTR_Pao 200791 201822 23 + . . scaffold86 GLEAN mRNA 218477 218510 0.897284 + . ID=CGI_10028142; scaffold86 TRF Tandem_Repeat 218477 218510 68 + . . scaffold86 GLEAN mRNA 218096 218257 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1-Tx1 218096 218257 29 + . . scaffold86 GLEAN mRNA 217920 218075 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1-Tx1 217920 218075 35 + . . scaffold86 GLEAN mRNA 217098 217394 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1 217098 217394 35 + . . scaffold86 GLEAN mRNA 217092 217565 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1 217092 217565 24 + . . scaffold86 GLEAN mRNA 217592 217765 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1-Tx1 217592 217765 59 + . . scaffold86 GLEAN mRNA 217682 217909 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1-Tx1 217682 217909 31 + . . scaffold86 GLEAN mRNA 218060 218227 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1-Tx1 218060 218227 30 + . . scaffold86 GLEAN mRNA 216521 217057 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1-Tx1 216521 217057 151 + . . scaffold86 GLEAN mRNA 217068 217220 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1-Tx1 217068 217220 92 + . . scaffold86 GLEAN mRNA 217095 217250 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1-Tx1 217095 217250 76 + . . scaffold86 GLEAN mRNA 217685 217849 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1-Tx1 217685 217849 56 + . . scaffold86 GLEAN mRNA 217917 218036 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1-Tx1 217917 218036 41 + . . scaffold86 GLEAN mRNA 217661 217768 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LINE_L1 217661 217768 75 + . . scaffold86 GLEAN mRNA 226174 226395 0.977065 - . ID=CGI_10028143; scaffold86 WUBlastX DNA_IS4EU 226174 226395 139 - . . scaffold86 GLEAN mRNA 226613 227284 0.977065 - . ID=CGI_10028143; scaffold86 WUBlastX DNA_IS4EU 226613 227284 397 - . . scaffold86 GLEAN mRNA 227551 227685 0.977065 - . ID=CGI_10028143; scaffold86 WUBlastX DNA_IS4EU 227551 227685 45 - . . scaffold86 GLEAN mRNA 227497 227724 0.977065 - . ID=CGI_10028143; scaffold86 WUBlastX DNA_Kolobok-IS4 227497 227724 27 - . . scaffold86 GLEAN mRNA 228354 228665 0.977065 - . ID=CGI_10028143; scaffold86 WUBlastX DNA_IS4EU 228354 228665 51 - . . scaffold86 GLEAN mRNA 236663 237621 0.760974 - . ID=CGI_10028144; scaffold86 TRF Tandem_Repeat 236663 237621 1386 + . . scaffold86 GLEAN mRNA 237652 237690 0.760974 - . ID=CGI_10028144; scaffold86 TRF Tandem_Repeat 237652 237690 51 + . . scaffold86 GLEAN mRNA 244351 244728 0.760974 - . ID=CGI_10028144; scaffold86 WUBlastX LINE_Penelope 244351 244728 118 - . . scaffold86 GLEAN mRNA 244297 244599 0.760974 - . ID=CGI_10028144; scaffold86 WUBlastX LINE_Penelope 244297 244599 149 - . . scaffold86 GLEAN mRNA 281086 282058 0.844274 - . ID=CGI_10028145; scaffold86 TRF Tandem_Repeat 281086 282058 1455 + . . scaffold86 GLEAN mRNA 319833 319862 0.661006 - . ID=CGI_10028147; scaffold86 TRF Tandem_Repeat 319833 319862 51 + . . scaffold86 GLEAN mRNA 321089 321131 0.661006 - . ID=CGI_10028147; scaffold86 TRF Tandem_Repeat 321089 321131 50 + . . scaffold86 GLEAN mRNA 321228 321305 0.661006 - . ID=CGI_10028147; scaffold86 TRF Tandem_Repeat 321228 321305 50 + . . scaffold86 GLEAN mRNA 327861 327913 0.661006 - . ID=CGI_10028147; scaffold86 TRF Tandem_Repeat 327861 327913 54 + . . scaffold86 GLEAN mRNA 339021 339047 1 - . ID=CGI_10028148; scaffold86 TRF Tandem_Repeat 339021 339047 54 + . . scaffold86 GLEAN mRNA 341932 342406 1 - . ID=CGI_10028148; scaffold86 TRF Tandem_Repeat 341932 342406 505 + . . scaffold86 GLEAN mRNA 345560 345595 1 - . ID=CGI_10028148; scaffold86 TRF Tandem_Repeat 345560 345595 72 + . . scaffold86 GLEAN mRNA 348355 348604 1 - . ID=CGI_10028148; scaffold86 TRF Tandem_Repeat 348355 348604 401 + . . scaffold86 GLEAN mRNA 383313 383346 1 + . ID=CGI_10028150; scaffold86 TRF Tandem_Repeat 383313 383346 68 + . . scaffold86 GLEAN mRNA 399545 399964 0.217037 + . ID=CGI_10028152; scaffold86 WUBlastX DNA_Academ 399545 399964 110 + . . scaffold86 GLEAN mRNA 399734 399979 0.217037 + . ID=CGI_10028152; scaffold86 WUBlastX DNA_Academ 399734 399979 115 + . . scaffold86 GLEAN mRNA 398522 398896 0.217037 + . ID=CGI_10028152; scaffold86 WUBlastX DNA_Academ 398165 398896 95 + . . scaffold86 GLEAN mRNA 398939 399580 0.217037 + . ID=CGI_10028152; scaffold86 WUBlastX DNA_Academ 398939 399580 226 + . . scaffold86 GLEAN mRNA 399876 400295 0.217037 + . ID=CGI_10028152; scaffold86 WUBlastX DNA_Academ 399876 400295 182 + . . scaffold86 GLEAN mRNA 578568 578930 0.999999 + . ID=CGI_10028160; scaffold86 WUBlastX DNA_Sola 578568 578930 74 + . . scaffold86 GLEAN mRNA 577054 577470 0.999999 + . ID=CGI_10028160; scaffold86 WUBlastX DNA_Sola 577000 577470 29 + . . scaffold86 GLEAN mRNA 600277 600470 0.999064 + . ID=CGI_10028161; scaffold86 TRF Tandem_Repeat 600277 600470 325 + . . scaffold86 GLEAN mRNA 609111 609283 0.499471 - . ID=CGI_10028162; scaffold86 TRF Tandem_Repeat 609111 609283 346 + . . scaffold86 GLEAN mRNA 614793 614830 0.499471 - . ID=CGI_10028162; scaffold86 TRF Tandem_Repeat 614793 614830 76 + . . scaffold86 GLEAN mRNA 698928 699368 0.946427 + . ID=CGI_10028168; scaffold86 WUBlastX DNA_Kolobok-Hyd 698928 699368 41 + . . scaffold86 GLEAN mRNA 753771 753837 0.557176 - . ID=CGI_10028171; scaffold86 TRF Tandem_Repeat 753771 753837 116 + . . scaffold86 GLEAN mRNA 754420 754469 0.557176 - . ID=CGI_10028171; scaffold86 TRF Tandem_Repeat 754420 754469 100 + . . scaffold86 GLEAN mRNA 806043 807479 1 + . ID=CGI_10028175; scaffold86 WUBlastX LTR_Gypsy 806043 807479 1039 - . . scaffold86 GLEAN mRNA 806043 806681 0.999999 - . ID=CGI_10028176; scaffold86 WUBlastX LTR_Gypsy 806043 807479 1039 - . . scaffold86 GLEAN mRNA 878823 882223 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 878823 882223 4945 + . . scaffold86 GLEAN mRNA 879110 879228 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 879110 879228 55 + . . scaffold86 GLEAN mRNA 878823 882223 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 878823 882223 4990 + . . scaffold86 GLEAN mRNA 878823 882218 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 878823 882218 5810 + . . scaffold86 GLEAN mRNA 879815 879933 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 879815 879933 55 + . . scaffold86 GLEAN mRNA 880614 880732 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 880614 880732 55 + . . scaffold86 GLEAN mRNA 880943 881061 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 880943 881061 55 + . . scaffold86 GLEAN mRNA 881742 881860 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 881742 881860 55 + . . scaffold86 GLEAN mRNA 884772 885479 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 884772 885479 679 + . . scaffold86 GLEAN mRNA 884823 885479 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 884823 885479 635 + . . scaffold86 GLEAN mRNA 889779 890381 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 889779 890381 602 + . . scaffold86 GLEAN mRNA 889857 890381 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 889857 890381 536 + . . scaffold86 GLEAN mRNA 889975 890080 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 889975 890080 118 + . . scaffold86 GLEAN mRNA 897203 897700 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 897203 897700 718 + . . scaffold86 GLEAN mRNA 918736 918780 1 + . ID=CGI_10028180; scaffold86 TRF Tandem_Repeat 918736 918780 90 + . . scaffold86 GLEAN mRNA 921271 921536 0.999351 - . ID=CGI_10028181; scaffold86 TRF Tandem_Repeat 921271 921536 383 + . . scaffold86 GLEAN mRNA 924316 926105 0.999351 - . ID=CGI_10028181; scaffold86 TRF Tandem_Repeat 924316 926105 2466 + . . scaffold86 GLEAN mRNA 965793 966296 1 - . ID=CGI_10028183; scaffold86 TRF Tandem_Repeat 965793 966296 777 + . . scaffold86 GLEAN mRNA 966913 967016 1 - . ID=CGI_10028183; scaffold86 TRF Tandem_Repeat 966913 967016 120 + . . scaffold86 GLEAN mRNA 1015170 1015220 0.71092 - . ID=CGI_10028184; scaffold86 TRF Tandem_Repeat 1015170 1015220 102 + . . scaffold86 GLEAN mRNA 1022552 1022589 0.71092 - . ID=CGI_10028184; scaffold86 TRF Tandem_Repeat 1022552 1022589 76 + . . scaffold86 GLEAN mRNA 1118148 1118202 0.999603 + . ID=CGI_10028187; scaffold86 TRF Tandem_Repeat 1118148 1118202 110 + . . scaffold86 GLEAN mRNA 1121576 1121604 0.987944 + . ID=CGI_10028188; scaffold86 TRF Tandem_Repeat 1121576 1121604 58 + . . scaffold86 GLEAN mRNA 1193830 1194192 1 - . ID=CGI_10028193; scaffold86 TRF Tandem_Repeat 1193830 1194192 591 + . . scaffold86 GLEAN mRNA 1194322 1194772 1 - . ID=CGI_10028193; scaffold86 TRF Tandem_Repeat 1194322 1194772 172 + . . scaffold86 GLEAN mRNA 1194491 1194768 1 - . ID=CGI_10028193; scaffold86 TRF Tandem_Repeat 1194491 1194768 190 + . . scaffold86 GLEAN mRNA 1197619 1197666 1 - . ID=CGI_10028193; scaffold86 TRF Tandem_Repeat 1197619 1197666 51 + . . scaffold86 GLEAN mRNA 1197622 1197666 1 - . ID=CGI_10028193; scaffold86 TRF Tandem_Repeat 1197622 1197666 72 + . . scaffold86 GLEAN mRNA 1236953 1237443 0.605603 + . ID=CGI_10028197; scaffold86 TRF Tandem_Repeat 1236953 1237443 563 + . . scaffold86 GLEAN mRNA 1236953 1237442 0.605603 + . ID=CGI_10028197; scaffold86 TRF Tandem_Repeat 1236953 1237442 554 + . . scaffold86 GLEAN mRNA 1236954 1237443 0.605603 + . ID=CGI_10028197; scaffold86 TRF Tandem_Repeat 1236954 1237443 578 + . . scaffold86 GLEAN mRNA 1241377 1241408 0.605603 + . ID=CGI_10028197; scaffold86 TRF Tandem_Repeat 1241377 1241408 64 + . . scaffold86 GLEAN mRNA 1251139 1251178 0.605603 + . ID=CGI_10028197; scaffold86 TRF Tandem_Repeat 1251139 1251178 73 + . . scaffold86 GLEAN mRNA 1260162 1260389 0.605603 + . ID=CGI_10028197; scaffold86 WUBlastX LINE_RTE-BovB 1260162 1260389 105 - . . scaffold86 GLEAN mRNA 1260053 1260484 0.605603 + . ID=CGI_10028197; scaffold86 WUBlastX LINE_RTE-BovB 1260053 1260484 70 - . . scaffold86 GLEAN mRNA 1266660 1267565 0.605603 + . ID=CGI_10028197; scaffold86 TRF Tandem_Repeat 1266660 1267565 1532 + . . scaffold86 GLEAN mRNA 1277510 1277977 0.605603 + . ID=CGI_10028197; scaffold86 WUBlastX LTR_Gypsy-Cigr 1277510 1277977 149 - . . scaffold86 GLEAN mRNA 1277453 1278139 0.605603 + . ID=CGI_10028197; scaffold86 WUBlastX LTR_Gypsy 1277453 1278139 41 - . . scaffold86 GLEAN mRNA 1266660 1267565 1 - . ID=CGI_10028198; scaffold86 TRF Tandem_Repeat 1266660 1267565 1532 + . . scaffold86 GLEAN mRNA 1293913 1293991 0.999994 - . ID=CGI_10028199; scaffold86 TRF Tandem_Repeat 1293913 1293991 158 + . . scaffold86 GLEAN mRNA 1304516 1304584 1 + . ID=CGI_10028200; scaffold86 TRF Tandem_Repeat 1304516 1304584 102 + . . scaffold86 GLEAN mRNA 1312543 1312568 1 + . ID=CGI_10028200; scaffold86 TRF Tandem_Repeat 1312543 1312568 52 + . . scaffold86 GLEAN mRNA 1352917 1353276 0.5119 - . ID=CGI_10028203; scaffold86 WUBlastX DNA_Kolobok-Hyd 1352917 1353276 46 - . . scaffold86 GLEAN mRNA 1353470 1353544 0.5119 - . ID=CGI_10028203; scaffold86 WUBlastX DNA_Kolobok-Hyd 1353470 1353544 33 - . . scaffold86 GLEAN mRNA 1352593 1353180 0.5119 - . ID=CGI_10028203; scaffold86 WUBlastX DNA_Kolobok-Hyd 1352593 1353180 47 - . . scaffold86 GLEAN mRNA 1352824 1353174 0.5119 - . ID=CGI_10028203; scaffold86 WUBlastX DNA_Kolobok-Hyd 1352824 1353174 53 - . . scaffold86 GLEAN mRNA 1353452 1353520 0.5119 - . ID=CGI_10028203; scaffold86 WUBlastX DNA_Kolobok-Hyd 1353452 1353520 29 - . . scaffold86 GLEAN mRNA 1380557 1380604 1 - . ID=CGI_10028207; scaffold86 TRF Tandem_Repeat 1380557 1380604 71 + . . scaffold86 GLEAN mRNA 1381792 1381849 1 - . ID=CGI_10028207; scaffold86 TRF Tandem_Repeat 1381792 1381849 55 + . . scaffold86 GLEAN mRNA 1465908 1467032 0.915869 - . ID=CGI_10028213; scaffold86 TRF Tandem_Repeat 1465908 1467032 1582 + . . scaffold86 GLEAN mRNA 1500475 1501197 0.568677 - . ID=CGI_10028217; scaffold86 WUBlastX LTR_Pao 1500475 1501197 41 - . . scaffold86 GLEAN mRNA 1500391 1500537 0.568677 - . ID=CGI_10028217; scaffold86 WUBlastX LTR_Pao 1500391 1500537 42 - . . scaffold86 GLEAN mRNA 1553838 1553925 0.981588 - . ID=CGI_10028219; scaffold86 TRF Tandem_Repeat 1553838 1553925 68 + . . scaffold86 GLEAN mRNA 1557690 1557726 0.981588 - . ID=CGI_10028219; scaffold86 TRF Tandem_Repeat 1557690 1557726 74 + . . scaffold86 GLEAN mRNA 1557724 1557772 0.981588 - . ID=CGI_10028219; scaffold86 TRF Tandem_Repeat 1557724 1557772 98 + . . scaffold86 GLEAN mRNA 1578015 1578062 1 + . ID=CGI_10028222; scaffold86 TRF Tandem_Repeat 1578015 1578062 62 + . . scaffold86 GLEAN mRNA 1580160 1580185 1 + . ID=CGI_10028222; scaffold86 TRF Tandem_Repeat 1580160 1580185 52 + . . scaffold86 GLEAN mRNA 1585054 1586833 1 + . ID=CGI_10028222; scaffold86 TRF Tandem_Repeat 1585054 1586833 1170 + . . scaffold86 GLEAN mRNA 1585254 1585386 1 + . ID=CGI_10028222; scaffold86 TRF Tandem_Repeat 1585254 1585386 257 + . . scaffold86 GLEAN mRNA 1591782 1592101 1 + . ID=CGI_10028223; scaffold86 TRF Tandem_Repeat 1591782 1592101 140 + . . scaffold86 GLEAN mRNA 1635621 1635680 0.503492 + . ID=CGI_10028225; scaffold86 TRF Tandem_Repeat 1635621 1635680 120 + . . scaffold86 GLEAN mRNA 1635738 1635768 0.503492 + . ID=CGI_10028225; scaffold86 TRF Tandem_Repeat 1635738 1635768 62 + . . scaffold86 GLEAN mRNA 1649578 1649791 0.99992 - . ID=CGI_10028226; scaffold86 TRF Tandem_Repeat 1649578 1649791 83 + . . scaffold86 GLEAN mRNA 1665171 1666256 0.99992 - . ID=CGI_10028226; scaffold86 TRF Tandem_Repeat 1665171 1666256 1481 + . . scaffold86 GLEAN mRNA 1683291 1683325 1 - . ID=CGI_10028228; scaffold86 TRF Tandem_Repeat 1683291 1683325 70 + . . scaffold86 GLEAN mRNA 1686648 1687513 0.941293 + . ID=CGI_10028229; scaffold86 TRF Tandem_Repeat 1686648 1687513 1418 + . . scaffold86 GLEAN mRNA 1694229 1694265 0.941293 + . ID=CGI_10028229; scaffold86 TRF Tandem_Repeat 1694229 1694265 56 + . . scaffold1532 GLEAN mRNA 8248 8298 1 + . ID=CGI_10028231; scaffold1532 TRF Tandem_Repeat 8248 8298 93 + . . scaffold1532 GLEAN mRNA 73310 73565 0.89002 + . ID=CGI_10028233; scaffold1532 TRF Tandem_Repeat 73310 73565 322 + . . scaffold1532 GLEAN mRNA 108128 108403 0.937298 - . ID=CGI_10028235; scaffold1532 TRF Tandem_Repeat 108128 108403 216 + . . scaffold1532 GLEAN mRNA 176657 176953 0.889583 - . ID=CGI_10028236; scaffold1532 WUBlastX DNA_Harbinger 176657 176953 77 - . . scaffold1532 GLEAN mRNA 176747 176941 0.889583 - . ID=CGI_10028236; scaffold1532 WUBlastX DNA_Harbinger 176747 176941 94 - . . scaffold1532 GLEAN mRNA 199228 199322 0.449006 - . ID=CGI_10028237; scaffold1532 TRF Tandem_Repeat 199228 199322 102 + . . scaffold1532 GLEAN mRNA 232054 232605 0.438723 + . ID=CGI_10028239; scaffold1532 WUBlastX LTR_Gypsy-Cigr 232054 232605 128 + . . scaffold1532 GLEAN mRNA 232144 232836 0.438723 + . ID=CGI_10028239; scaffold1532 WUBlastX LTR_Gypsy-Cigr 232144 232836 178 + . . scaffold1532 GLEAN mRNA 326842 326887 0.99935 + . ID=CGI_10028244; scaffold1532 TRF Tandem_Repeat 326842 326887 92 + . . scaffold1532 GLEAN mRNA 332533 332584 0.99935 + . ID=CGI_10028244; scaffold1532 TRF Tandem_Repeat 332533 332584 104 + . . scaffold1532 GLEAN mRNA 330742 331482 0.99935 + . ID=CGI_10028244; scaffold1532 WUBlastX LINE_RTE-X 330742 331482 199 - . . scaffold1532 GLEAN mRNA 327178 330675 0.99935 + . ID=CGI_10028244; scaffold1532 WUBlastX LINE_RTE-X 327178 330675 2069 - . . scaffold1532 GLEAN mRNA 326842 326887 0.918094 - . ID=CGI_10028245; scaffold1532 TRF Tandem_Repeat 326842 326887 92 + . . scaffold1532 GLEAN mRNA 330742 331440 0.918094 - . ID=CGI_10028245; scaffold1532 WUBlastX LINE_RTE-X 330742 331482 199 - . . scaffold1532 GLEAN mRNA 327178 330675 0.918094 - . ID=CGI_10028245; scaffold1532 WUBlastX LINE_RTE-X 327178 330675 2069 - . . scaffold1532 GLEAN mRNA 391970 392923 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX LTR_Gypsy 391970 392923 358 + . . scaffold1532 GLEAN mRNA 392123 393085 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX LTR_Gypsy 392123 393085 394 + . . scaffold1532 GLEAN mRNA 397883 397981 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX DNA_IS4EU 397883 397981 56 + . . scaffold1532 GLEAN mRNA 393905 394525 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX LTR_Gypsy 393905 394525 95 + . . scaffold1532 GLEAN mRNA 394034 394531 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX LTR_Gypsy 394034 394531 489 + . . scaffold1532 GLEAN mRNA 394527 395360 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX LTR_Gypsy 394527 395360 569 + . . scaffold1532 GLEAN mRNA 395371 396450 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX LTR_Gypsy 395371 396450 738 + . . scaffold1532 GLEAN mRNA 397883 397954 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX DNA_IS4EU 397883 397954 57 + . . scaffold1532 GLEAN mRNA 397421 397828 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX DNA_IS4EU 397421 397828 89 + . . scaffold1532 GLEAN mRNA 393539 393670 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX LTR_Gypsy 393539 393670 31 + . . scaffold1532 GLEAN mRNA 397397 397744 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX DNA_Kolobok-IS4 397397 397744 94 + . . scaffold1532 GLEAN mRNA 393698 393784 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX LTR_Gypsy 393698 393784 27 + . . scaffold1532 GLEAN mRNA 393767 394531 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX LTR_Gypsy 393767 394531 83 + . . scaffold1532 GLEAN mRNA 393043 393513 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX LTR_Gypsy 393043 393513 125 + . . scaffold1532 GLEAN mRNA 408086 408151 0.729212 + . ID=CGI_10028250; scaffold1532 TRF Tandem_Repeat 408086 408151 132 + . . scaffold1532 GLEAN mRNA 409084 409125 0.729212 + . ID=CGI_10028250; scaffold1532 TRF Tandem_Repeat 409084 409125 68 + . . scaffold1532 GLEAN mRNA 410802 412193 0.729212 + . ID=CGI_10028250; scaffold1532 WUBlastX LINE_RTE-X 410802 412193 431 - . . scaffold1532 GLEAN mRNA 410296 410694 0.729212 + . ID=CGI_10028250; scaffold1532 WUBlastX LINE_RTE-X 410296 410694 102 - . . scaffold1532 GLEAN mRNA 410766 410960 0.729212 + . ID=CGI_10028250; scaffold1532 WUBlastX LINE_RTE-X 410766 410960 51 - . . scaffold1532 GLEAN mRNA 410799 411734 0.729212 + . ID=CGI_10028250; scaffold1532 WUBlastX LINE_RTE-X 410799 411734 478 - . . scaffold1532 GLEAN mRNA 412293 412685 0.729212 + . ID=CGI_10028250; scaffold1532 WUBlastX LINE_L1-Tx1 412293 412685 211 - . . scaffold1532 GLEAN mRNA 410176 410643 0.729212 + . ID=CGI_10028250; scaffold1532 WUBlastX LINE_RTE-X 410176 410643 53 - . . scaffold1532 GLEAN mRNA 409942 410019 0.729212 + . ID=CGI_10028250; scaffold1532 WUBlastX LINE_R2 409942 410019 23 - . . scaffold1532 GLEAN mRNA 411798 412280 0.729212 + . ID=CGI_10028250; scaffold1532 WUBlastX LINE_I 411798 412280 38 - . . scaffold1532 GLEAN mRNA 410799 411950 0.729212 + . ID=CGI_10028250; scaffold1532 WUBlastX LINE_RTE-X 410799 411950 465 - . . scaffold1532 GLEAN mRNA 525511 525548 0.969356 + . ID=CGI_10028254; scaffold1532 TRF Tandem_Repeat 525511 525548 76 + . . scaffold1532 GLEAN mRNA 531214 531287 0.969356 + . ID=CGI_10028254; scaffold1532 TRF Tandem_Repeat 531214 531287 121 + . . scaffold1532 GLEAN mRNA 531214 531287 0.969356 + . ID=CGI_10028254; scaffold1532 TRF Tandem_Repeat 531214 531287 121 + . . scaffold1532 GLEAN mRNA 531214 531287 0.969356 + . ID=CGI_10028254; scaffold1532 TRF Tandem_Repeat 531214 531287 121 + . . scaffold1532 GLEAN mRNA 533320 533389 0.969356 + . ID=CGI_10028254; scaffold1532 TRF Tandem_Repeat 533320 533389 113 + . . scaffold1532 GLEAN mRNA 538544 538625 0.969356 + . ID=CGI_10028254; scaffold1532 TRF Tandem_Repeat 538544 538625 155 + . . scaffold1532 GLEAN mRNA 538625 538664 0.969356 + . ID=CGI_10028254; scaffold1532 TRF Tandem_Repeat 538625 538664 53 + . . scaffold1532 GLEAN mRNA 540476 540514 0.969356 + . ID=CGI_10028254; scaffold1532 TRF Tandem_Repeat 540476 540514 78 + . . scaffold1532 GLEAN mRNA 582038 582110 0.942324 - . ID=CGI_10028257; scaffold1532 TRF Tandem_Repeat 582038 582110 146 + . . scaffold1532 GLEAN mRNA 584333 584620 0.942324 - . ID=CGI_10028257; scaffold1532 TRF Tandem_Repeat 584333 584620 354 + . . scaffold1532 GLEAN mRNA 584403 584631 0.942324 - . ID=CGI_10028257; scaffold1532 TRF Tandem_Repeat 584403 584631 276 + . . scaffold1532 GLEAN mRNA 586778 587047 0.942324 - . ID=CGI_10028257; scaffold1532 WUBlastX DNA_Kolobok 586778 587047 76 - . . scaffold1532 GLEAN mRNA 587374 587454 0.942324 - . ID=CGI_10028257; scaffold1532 WUBlastX DNA_Kolobok 587374 587454 24 - . . scaffold1532 GLEAN mRNA 587688 587897 0.942324 - . ID=CGI_10028257; scaffold1532 WUBlastX DNA_Kolobok 587688 587897 92 - . . scaffold1532 GLEAN mRNA 586841 587047 0.942324 - . ID=CGI_10028257; scaffold1532 WUBlastX DNA_Kolobok 586841 587047 84 - . . scaffold1532 GLEAN mRNA 587670 587996 0.942324 - . ID=CGI_10028257; scaffold1532 WUBlastX DNA_Kolobok 587670 587996 88 - . . scaffold1532 GLEAN mRNA 595059 595121 0.615282 + . ID=CGI_10028259; scaffold1532 TRF Tandem_Repeat 595059 595121 65 + . . scaffold1532 GLEAN mRNA 609146 609265 0.502786 - . ID=CGI_10028261; scaffold1532 WUBlastX DNA_PiggyBac 609146 609265 65 - . . scaffold1532 GLEAN mRNA 608872 608943 0.502786 - . ID=CGI_10028261; scaffold1532 WUBlastX DNA_PiggyBac 608872 608943 25 - . . scaffold1532 GLEAN mRNA 606840 607175 0.502786 - . ID=CGI_10028261; scaffold1532 WUBlastX DNA_PiggyBac 606840 607175 68 - . . scaffold1532 GLEAN mRNA 608523 608678 0.502786 - . ID=CGI_10028261; scaffold1532 WUBlastX DNA_PiggyBac 608523 608678 56 - . . scaffold1532 GLEAN mRNA 609026 609265 0.502786 - . ID=CGI_10028261; scaffold1532 WUBlastX DNA_PiggyBac 609026 609265 35 - . . scaffold1532 GLEAN mRNA 606633 607109 0.502786 - . ID=CGI_10028261; scaffold1532 WUBlastX DNA_PiggyBac 606633 607109 160 - . . scaffold1532 GLEAN mRNA 607338 607526 0.502786 - . ID=CGI_10028261; scaffold1532 WUBlastX DNA_PiggyBac 607338 607526 105 - . . scaffold1532 GLEAN mRNA 609844 609966 0.502786 - . ID=CGI_10028261; scaffold1532 WUBlastX DNA_PiggyBac 609844 609966 87 - . . scaffold1532 GLEAN mRNA 610151 610570 0.502786 - . ID=CGI_10028261; scaffold1532 WUBlastX DNA_PiggyBac 610151 610570 113 - . . scaffold1532 GLEAN mRNA 607338 607589 0.502786 - . ID=CGI_10028261; scaffold1532 WUBlastX DNA_PiggyBac 607338 607589 59 - . . scaffold1532 GLEAN mRNA 635407 635503 0.477064 + . ID=CGI_10028263; scaffold1532 TRF Tandem_Repeat 635407 635503 135 + . . scaffold1532 GLEAN mRNA 636951 637121 0.477064 + . ID=CGI_10028263; scaffold1532 WUBlastX DNA_Sola 636951 637121 35 + . . scaffold1532 GLEAN mRNA 640868 641413 0.995183 + . ID=CGI_10028264; scaffold1532 WUBlastX LTR_Ngaro 640868 641413 145 + . . scaffold1532 GLEAN mRNA 641072 641425 0.995183 + . ID=CGI_10028264; scaffold1532 WUBlastX LTR_Ngaro 641072 641425 153 + . . scaffold1532 GLEAN mRNA 641360 641776 0.995183 + . ID=CGI_10028264; scaffold1532 WUBlastX LTR_Ngaro 641360 641776 89 + . . scaffold1532 GLEAN mRNA 639358 640545 0.995183 + . ID=CGI_10028264; scaffold1532 WUBlastX LTR_Ngaro 639358 640545 257 + . . scaffold1532 GLEAN mRNA 640269 640919 0.995183 + . ID=CGI_10028264; scaffold1532 WUBlastX LTR_Ngaro 640269 640919 202 + . . scaffold1532 GLEAN mRNA 641498 641788 0.995183 + . ID=CGI_10028264; scaffold1532 WUBlastX LTR_Ngaro 641498 641788 124 + . . scaffold1532 GLEAN mRNA 638912 639115 0.995183 + . ID=CGI_10028264; scaffold1532 WUBlastX LTR_Ngaro 638912 639115 105 + . . scaffold1532 GLEAN mRNA 728283 728882 0.999929 - . ID=CGI_10028267; scaffold1532 TRF Tandem_Repeat 728283 728882 1092 + . . scaffold1532 GLEAN mRNA 729858 730020 0.999929 - . ID=CGI_10028267; scaffold1532 TRF Tandem_Repeat 729858 730020 221 + . . scaffold1532 GLEAN mRNA 733574 733607 0.999929 - . ID=CGI_10028267; scaffold1532 TRF Tandem_Repeat 733574 733607 68 + . . scaffold1532 GLEAN mRNA 754643 754670 0.966644 + . ID=CGI_10028269; scaffold1532 TRF Tandem_Repeat 754643 754670 56 + . . scaffold1532 GLEAN mRNA 754669 754730 0.966644 + . ID=CGI_10028269; scaffold1532 TRF Tandem_Repeat 754669 754730 124 + . . scaffold1532 GLEAN mRNA 764966 765027 0.966644 + . ID=CGI_10028269; scaffold1532 TRF Tandem_Repeat 764966 765027 88 + . . scaffold1532 GLEAN mRNA 754643 754670 0.77692 - . ID=CGI_10028270; scaffold1532 TRF Tandem_Repeat 754643 754670 56 + . . scaffold1532 GLEAN mRNA 754669 754730 0.77692 - . ID=CGI_10028270; scaffold1532 TRF Tandem_Repeat 754669 754730 124 + . . scaffold1532 GLEAN mRNA 783901 783927 0.96199 - . ID=CGI_10028271; scaffold1532 TRF Tandem_Repeat 783901 783927 54 + . . scaffold1532 GLEAN mRNA 784581 784637 0.96199 - . ID=CGI_10028271; scaffold1532 TRF Tandem_Repeat 784581 784637 114 + . . scaffold1532 GLEAN mRNA 790561 790627 0.96199 - . ID=CGI_10028271; scaffold1532 TRF Tandem_Repeat 790561 790627 134 + . . scaffold1532 GLEAN mRNA 796209 796249 0.837125 - . ID=CGI_10028272; scaffold1532 TRF Tandem_Repeat 796209 796249 82 + . . scaffold1532 GLEAN mRNA 798764 798814 0.837125 - . ID=CGI_10028272; scaffold1532 TRF Tandem_Repeat 798764 798814 88 + . . scaffold1532 GLEAN mRNA 799691 799787 0.837125 - . ID=CGI_10028272; scaffold1532 TRF Tandem_Repeat 799691 799787 88 + . . scaffold1532 GLEAN mRNA 815120 815153 0.837125 - . ID=CGI_10028272; scaffold1532 TRF Tandem_Repeat 815120 815153 50 + . . scaffold1532 GLEAN mRNA 815153 815196 0.837125 - . ID=CGI_10028272; scaffold1532 TRF Tandem_Repeat 815153 815196 70 + . . scaffold1532 GLEAN mRNA 929520 930239 0.988938 + . ID=CGI_10028274; scaffold1532 TRF Tandem_Repeat 929520 930239 212 + . . scaffold1532 GLEAN mRNA 929599 930033 0.988938 + . ID=CGI_10028274; scaffold1532 TRF Tandem_Repeat 929599 930033 419 + . . scaffold1532 GLEAN mRNA 931181 931756 0.988938 + . ID=CGI_10028274; scaffold1532 TRF Tandem_Repeat 931181 931756 202 + . . scaffold1532 GLEAN mRNA 963188 963278 0.999878 + . ID=CGI_10028276; scaffold1532 TRF Tandem_Repeat 963188 963278 86 + . . scaffold1532 GLEAN mRNA 963264 963324 0.999878 + . ID=CGI_10028276; scaffold1532 TRF Tandem_Repeat 963264 963324 50 + . . scaffold1532 GLEAN mRNA 958207 958854 0.999878 + . ID=CGI_10028276; scaffold1532 WUBlastX LINE_Penelope 958207 958854 160 + . . scaffold1532 GLEAN mRNA 957875 958174 0.999878 + . ID=CGI_10028276; scaffold1532 WUBlastX LINE_Penelope 957875 958174 103 + . . scaffold1532 GLEAN mRNA 957848 958207 0.999878 + . ID=CGI_10028276; scaffold1532 WUBlastX LINE_Penelope 957848 958207 37 + . . scaffold1532 GLEAN mRNA 974934 975317 0.953998 - . ID=CGI_10028277; scaffold1532 WUBlastX LINE_RTE-X 974934 975317 78 - . . scaffold1532 GLEAN mRNA 974994 975323 0.953998 - . ID=CGI_10028277; scaffold1532 WUBlastX LINE_RTE-X 974994 975323 135 - . . scaffold1532 GLEAN mRNA 975120 975362 0.953998 - . ID=CGI_10028277; scaffold1532 WUBlastX LINE_RTE-X 975120 975362 85 - . . scaffold1532 GLEAN mRNA 988091 988837 0.999875 - . ID=CGI_10028278; scaffold1532 WUBlastX LTR_Gypsy 988091 988837 86 + . . scaffold1532 GLEAN mRNA 987745 988080 0.999875 - . ID=CGI_10028278; scaffold1532 WUBlastX LTR_Gypsy 987745 988080 111 + . . scaffold1532 GLEAN mRNA 988770 988898 0.999875 - . ID=CGI_10028278; scaffold1532 WUBlastX LTR_Gypsy 988770 988898 26 + . . scaffold1532 GLEAN mRNA 988094 988651 0.999875 - . ID=CGI_10028278; scaffold1532 WUBlastX LTR_Gypsy 988094 988651 218 + . . scaffold1532 GLEAN mRNA 988711 988866 0.999875 - . ID=CGI_10028278; scaffold1532 WUBlastX LTR_Gypsy 988711 988866 57 + . . scaffold1532 GLEAN mRNA 1062647 1062688 0.73346 - . ID=CGI_10028279; scaffold1532 WUBlastX LTR_DIRS 1062647 1063267 26 - . . scaffold1532 GLEAN mRNA 1112145 1112501 0.979648 - . ID=CGI_10028281; scaffold1532 WUBlastX LTR_Gypsy 1112145 1112564 81 - . . scaffold1532 GLEAN mRNA 1112151 1112486 0.979648 - . ID=CGI_10028281; scaffold1532 WUBlastX LTR_Gypsy-Troyk 1112151 1112486 151 - . . scaffold1532 GLEAN mRNA 1144266 1144324 0.992288 + . ID=CGI_10028283; scaffold1532 TRF Tandem_Repeat 1144266 1144324 118 + . . scaffold1532 GLEAN mRNA 1134685 1135227 0.992288 + . ID=CGI_10028283; scaffold1532 WUBlastX LTR_Ngaro 1134685 1135227 101 - . . scaffold1532 GLEAN mRNA 1133427 1133612 0.992288 + . ID=CGI_10028283; scaffold1532 WUBlastX LTR_Ngaro 1133427 1133612 55 - . . scaffold1532 GLEAN mRNA 1133439 1133594 0.992288 + . ID=CGI_10028283; scaffold1532 WUBlastX LTR_Ngaro 1133439 1133594 59 - . . scaffold1532 GLEAN mRNA 1133313 1133585 0.992288 + . ID=CGI_10028283; scaffold1532 WUBlastX LTR_Ngaro 1133313 1133585 37 - . . scaffold1532 GLEAN mRNA 1133710 1133892 0.992288 + . ID=CGI_10028283; scaffold1532 WUBlastX LTR_Ngaro 1133710 1133892 58 - . . scaffold1532 GLEAN mRNA 1133882 1134196 0.992288 + . ID=CGI_10028283; scaffold1532 WUBlastX LTR_Ngaro 1133882 1134196 66 - . . scaffold1532 GLEAN mRNA 1134217 1134363 0.992288 + . ID=CGI_10028283; scaffold1532 WUBlastX LTR_Ngaro 1134217 1134363 45 - . . scaffold1532 GLEAN mRNA 1133631 1133750 0.992288 + . ID=CGI_10028283; scaffold1532 WUBlastX LTR_Ngaro 1133631 1133750 33 - . . scaffold1532 GLEAN mRNA 1306884 1306925 0.999471 - . ID=CGI_10028288; scaffold1532 TRF Tandem_Repeat 1306884 1306925 84 + . . scaffold1532 GLEAN mRNA 1314445 1314477 0.999471 - . ID=CGI_10028288; scaffold1532 TRF Tandem_Repeat 1314445 1314477 50 + . . scaffold1532 GLEAN mRNA 1332475 1332529 0.999471 - . ID=CGI_10028288; scaffold1532 TRF Tandem_Repeat 1332475 1332529 110 + . . scaffold1532 GLEAN mRNA 1335853 1335890 0.999471 - . ID=CGI_10028288; scaffold1532 TRF Tandem_Repeat 1335853 1335890 76 + . . scaffold1532 GLEAN mRNA 1380092 1380270 0.703185 - . ID=CGI_10028289; scaffold1532 TRF Tandem_Repeat 1380092 1380270 126 + . . scaffold1532 GLEAN mRNA 1380142 1380256 0.703185 - . ID=CGI_10028289; scaffold1532 TRF Tandem_Repeat 1380142 1380256 106 + . . scaffold1532 GLEAN mRNA 1380433 1380622 0.703185 - . ID=CGI_10028289; scaffold1532 TRF Tandem_Repeat 1380433 1380622 326 + . . scaffold1532 GLEAN mRNA 1413517 1413572 1 + . ID=CGI_10028293; scaffold1532 TRF Tandem_Repeat 1413517 1413572 103 + . . scaffold1532 GLEAN mRNA 1424286 1424370 0.804182 - . ID=CGI_10028294; scaffold1532 TRF Tandem_Repeat 1424286 1424370 163 + . . scaffold1532 GLEAN mRNA 1426448 1426479 0.804182 - . ID=CGI_10028294; scaffold1532 TRF Tandem_Repeat 1426448 1426479 64 + . . scaffold1532 GLEAN mRNA 1428776 1428827 0.804182 - . ID=CGI_10028294; scaffold1532 TRF Tandem_Repeat 1428776 1428827 104 + . . scaffold1532 GLEAN mRNA 1461501 1461549 1 - . ID=CGI_10028297; scaffold1532 TRF Tandem_Repeat 1461501 1461549 98 + . . scaffold1532 GLEAN mRNA 1463959 1464024 1 - . ID=CGI_10028297; scaffold1532 TRF Tandem_Repeat 1463959 1464024 132 + . . scaffold1532 GLEAN mRNA 1472501 1473049 0.999949 - . ID=CGI_10028298; scaffold1532 TRF Tandem_Repeat 1472501 1473049 737 + . . scaffold1532 GLEAN mRNA 1504845 1505080 0.998575 + . ID=CGI_10028301; scaffold1532 TRF Tandem_Repeat 1504845 1505080 212 + . . scaffold1532 GLEAN mRNA 1580767 1580804 0.966007 - . ID=CGI_10028312; scaffold1532 TRF Tandem_Repeat 1580767 1580804 76 + . . scaffold1532 GLEAN mRNA 1591819 1594503 0.966007 - . ID=CGI_10028312; scaffold1532 TRF Tandem_Repeat 1591819 1594503 3530 + . . scaffold1532 GLEAN mRNA 1615761 1615822 1 + . ID=CGI_10028314; scaffold1532 TRF Tandem_Repeat 1615761 1615822 124 + . . scaffold1532 GLEAN mRNA 1618838 1618873 1 + . ID=CGI_10028314; scaffold1532 TRF Tandem_Repeat 1618838 1618873 54 + . . scaffold1532 GLEAN mRNA 1624310 1625049 1 + . ID=CGI_10028314; scaffold1532 TRF Tandem_Repeat 1624310 1625049 1063 + . . scaffold1532 GLEAN mRNA 1625366 1626580 1 + . ID=CGI_10028314; scaffold1532 TRF Tandem_Repeat 1625366 1626580 1878 + . . scaffold419 GLEAN mRNA 39605 39943 0.992133 + . ID=CGI_10028318; scaffold419 WUBlastX DNA_PiggyBac 39605 39943 113 + . . scaffold419 GLEAN mRNA 39656 39910 0.992133 + . ID=CGI_10028318; scaffold419 WUBlastX DNA_PiggyBac 39656 39910 129 + . . scaffold419 GLEAN mRNA 39924 39983 0.992133 + . ID=CGI_10028318; scaffold419 WUBlastX DNA_PiggyBac 39924 39983 39 + . . scaffold419 GLEAN mRNA 47959 48150 0.999992 + . ID=CGI_10028319; scaffold419 WUBlastX LINE_CR1 47959 48150 86 - . . scaffold419 GLEAN mRNA 47281 47496 0.999992 + . ID=CGI_10028319; scaffold419 WUBlastX LINE_RTE-X 47281 47496 26 - . . scaffold419 GLEAN mRNA 47709 48578 0.999992 + . ID=CGI_10028319; scaffold419 WUBlastX LINE_RTE-X 47709 48578 84 - . . scaffold419 GLEAN mRNA 47463 48578 0.999992 + . ID=CGI_10028319; scaffold419 WUBlastX LINE_RTE-X 47463 48578 81 - . . scaffold419 GLEAN mRNA 48237 48638 0.999992 + . ID=CGI_10028319; scaffold419 WUBlastX LINE_I 48237 48638 85 - . . scaffold419 GLEAN mRNA 48228 48491 0.999992 + . ID=CGI_10028319; scaffold419 WUBlastX LINE_Jockey 48228 48491 96 - . . scaffold419 GLEAN mRNA 48623 49672 0.999992 + . ID=CGI_10028319; scaffold419 WUBlastX LINE_Proto2 48623 49672 96 - . . scaffold419 GLEAN mRNA 91741 91773 0.992945 - . ID=CGI_10028320; scaffold419 TRF Tandem_Repeat 91741 91773 66 + . . scaffold419 GLEAN mRNA 191231 191386 1 - . ID=CGI_10028330; scaffold419 WUBlastX DNA_IS4EU 191231 191386 107 - . . scaffold419 GLEAN mRNA 191225 191440 1 - . ID=CGI_10028330; scaffold419 WUBlastX DNA_IS4EU 191225 191440 54 - . . scaffold419 GLEAN mRNA 209450 209480 0.702384 + . ID=CGI_10028333; scaffold419 TRF Tandem_Repeat 209450 209480 53 + . . scaffold419 GLEAN mRNA 209450 209480 0.99999 - . ID=CGI_10028334; scaffold419 TRF Tandem_Repeat 209450 209480 53 + . . scaffold419 GLEAN mRNA 220600 220807 0.90309 - . ID=CGI_10028335; scaffold419 TRF Tandem_Repeat 220600 220807 156 + . . scaffold419 GLEAN mRNA 220621 220807 0.90309 - . ID=CGI_10028335; scaffold419 TRF Tandem_Repeat 220621 220807 203 + . . scaffold419 GLEAN mRNA 220807 221048 0.90309 - . ID=CGI_10028335; scaffold419 TRF Tandem_Repeat 220807 221048 216 + . . scaffold419 GLEAN mRNA 221122 221208 0.90309 - . ID=CGI_10028335; scaffold419 TRF Tandem_Repeat 221122 221208 122 + . . scaffold419 GLEAN mRNA 222521 222552 0.90309 - . ID=CGI_10028335; scaffold419 TRF Tandem_Repeat 222521 222552 55 + . . scaffold419 GLEAN mRNA 223983 224036 0.90309 - . ID=CGI_10028335; scaffold419 TRF Tandem_Repeat 223983 224036 108 + . . scaffold419 GLEAN mRNA 230790 231000 0.90309 - . ID=CGI_10028335; scaffold419 TRF Tandem_Repeat 230790 231000 248 + . . scaffold419 GLEAN mRNA 252230 252511 0.999183 - . ID=CGI_10028337; scaffold419 WUBlastX LINE_RTE-BovB 252230 252511 41 + . . scaffold419 GLEAN mRNA 252230 252466 0.999183 - . ID=CGI_10028337; scaffold419 WUBlastX LINE_RTE-BovB 252230 252466 157 + . . scaffold419 GLEAN mRNA 251911 252153 0.999183 - . ID=CGI_10028337; scaffold419 WUBlastX LINE_RTE-BovB 251911 252153 141 + . . scaffold419 GLEAN mRNA 252170 252457 0.999183 - . ID=CGI_10028337; scaffold419 WUBlastX LINE_RTE-BovB 252170 252457 45 + . . scaffold419 GLEAN mRNA 308531 308618 0.999624 + . ID=CGI_10028339; scaffold419 TRF Tandem_Repeat 308531 308618 95 + . . scaffold419 GLEAN mRNA 308531 308618 0.999624 + . ID=CGI_10028339; scaffold419 TRF Tandem_Repeat 308531 308618 68 + . . scaffold419 GLEAN mRNA 310401 311230 0.999624 + . ID=CGI_10028339; scaffold419 TRF Tandem_Repeat 310401 311230 1307 + . . scaffold419 GLEAN mRNA 343101 343150 0.999624 + . ID=CGI_10028339; scaffold419 TRF Tandem_Repeat 343101 343150 73 + . . scaffold419 GLEAN mRNA 375789 375846 0.553015 - . ID=CGI_10028341; scaffold419 TRF Tandem_Repeat 375789 375846 116 + . . scaffold419 GLEAN mRNA 377662 377706 0.553015 - . ID=CGI_10028341; scaffold419 TRF Tandem_Repeat 377662 377706 90 + . . scaffold419 GLEAN mRNA 412169 412208 0.963955 + . ID=CGI_10028342; scaffold419 TRF Tandem_Repeat 412169 412208 80 + . . scaffold419 GLEAN mRNA 417774 417907 0.963955 + . ID=CGI_10028342; scaffold419 TRF Tandem_Repeat 417774 417907 117 + . . scaffold419 GLEAN mRNA 418099 418215 0.963955 + . ID=CGI_10028342; scaffold419 TRF Tandem_Repeat 418099 418215 92 + . . scaffold419 GLEAN mRNA 424083 424132 0.963955 + . ID=CGI_10028342; scaffold419 TRF Tandem_Repeat 424083 424132 57 + . . scaffold419 GLEAN mRNA 432642 432671 0.963955 + . ID=CGI_10028342; scaffold419 TRF Tandem_Repeat 432642 432671 60 + . . scaffold419 GLEAN mRNA 432698 432729 0.963955 + . ID=CGI_10028342; scaffold419 TRF Tandem_Repeat 432698 432729 64 + . . scaffold419 GLEAN mRNA 425244 426694 0.963955 + . ID=CGI_10028342; scaffold419 TRF Tandem_Repeat 425244 426694 1319 + . . scaffold419 GLEAN mRNA 450680 450843 0.443455 - . ID=CGI_10028344; scaffold419 TRF Tandem_Repeat 450680 450843 222 + . . scaffold419 GLEAN mRNA 456813 457104 0.993069 + . ID=CGI_10028345; scaffold419 TRF Tandem_Repeat 456813 457104 440 + . . scaffold419 GLEAN mRNA 458350 458509 0.993069 + . ID=CGI_10028345; scaffold419 TRF Tandem_Repeat 458350 458509 203 + . . scaffold419 GLEAN mRNA 459734 459958 0.993069 + . ID=CGI_10028345; scaffold419 TRF Tandem_Repeat 459734 459958 398 + . . scaffold419 GLEAN mRNA 460107 460396 0.993069 + . ID=CGI_10028345; scaffold419 TRF Tandem_Repeat 460107 460396 328 + . . scaffold419 GLEAN mRNA 460112 460396 0.993069 + . ID=CGI_10028345; scaffold419 TRF Tandem_Repeat 460112 460396 327 + . . scaffold419 GLEAN mRNA 478425 478483 0.999344 + . ID=CGI_10028347; scaffold419 TRF Tandem_Repeat 478425 478483 118 + . . scaffold419 GLEAN mRNA 485701 485731 0.999344 + . ID=CGI_10028347; scaffold419 TRF Tandem_Repeat 485701 485731 62 + . . scaffold419 GLEAN mRNA 487957 488050 0.999344 + . ID=CGI_10028347; scaffold419 TRF Tandem_Repeat 487957 488050 165 + . . scaffold419 GLEAN mRNA 488504 488570 0.999344 + . ID=CGI_10028347; scaffold419 TRF Tandem_Repeat 488504 488570 134 + . . scaffold419 GLEAN mRNA 531923 531968 0.99171 + . ID=CGI_10028348; scaffold419 TRF Tandem_Repeat 531923 531968 74 + . . scaffold419 GLEAN mRNA 537543 537821 0.55742 - . ID=CGI_10028349; scaffold419 TRF Tandem_Repeat 537543 537821 434 + . . scaffold419 GLEAN mRNA 538129 538294 0.55742 - . ID=CGI_10028349; scaffold419 TRF Tandem_Repeat 538129 538294 262 + . . scaffold419 GLEAN mRNA 564033 564203 0.891231 + . ID=CGI_10028350; scaffold419 TRF Tandem_Repeat 564033 564203 193 + . . scaffold419 GLEAN mRNA 564200 564464 0.891231 + . ID=CGI_10028350; scaffold419 TRF Tandem_Repeat 564200 564464 331 + . . scaffold419 GLEAN mRNA 566945 567453 0.891231 + . ID=CGI_10028350; scaffold419 TRF Tandem_Repeat 566945 567453 753 + . . scaffold419 GLEAN mRNA 567825 567885 0.891231 + . ID=CGI_10028350; scaffold419 TRF Tandem_Repeat 567825 567885 108 + . . scaffold419 GLEAN mRNA 570525 571104 0.891231 + . ID=CGI_10028350; scaffold419 TRF Tandem_Repeat 570525 571104 770 + . . scaffold419 GLEAN mRNA 571107 571208 0.891231 + . ID=CGI_10028350; scaffold419 TRF Tandem_Repeat 571107 571208 91 + . . scaffold419 GLEAN mRNA 581870 581951 0.98952 - . ID=CGI_10028352; scaffold419 TRF Tandem_Repeat 581870 581951 103 + . . scaffold419 GLEAN mRNA 626221 626277 0.800247 + . ID=CGI_10028355; scaffold419 TRF Tandem_Repeat 626221 626277 105 + . . scaffold419 GLEAN mRNA 641291 642469 0.999994 + . ID=CGI_10028357; scaffold419 TRF Tandem_Repeat 641291 642469 1432 + . . scaffold419 GLEAN mRNA 676058 676580 0.998967 - . ID=CGI_10028358; scaffold419 TRF Tandem_Repeat 676058 676580 843 + . . scaffold419 GLEAN mRNA 679373 679482 0.998967 - . ID=CGI_10028358; scaffold419 TRF Tandem_Repeat 679373 679482 112 + . . scaffold419 GLEAN mRNA 680767 682356 0.998967 - . ID=CGI_10028358; scaffold419 WUBlastX LTR_Gypsy 680767 682356 728 - . . scaffold419 GLEAN mRNA 684526 684798 0.998967 - . ID=CGI_10028358; scaffold419 WUBlastX LTR_Gypsy 684526 684798 56 - . . scaffold419 GLEAN mRNA 680553 680651 0.998967 - . ID=CGI_10028358; scaffold419 WUBlastX LTR_Copia 680553 680651 32 - . . scaffold419 GLEAN mRNA 681034 684744 0.998967 - . ID=CGI_10028358; scaffold419 WUBlastX LTR_Gypsy-Cigr 681034 684744 2539 - . . scaffold419 GLEAN mRNA 684532 684873 0.998967 - . ID=CGI_10028358; scaffold419 WUBlastX LTR_Gypsy 684532 684873 29 - . . scaffold419 GLEAN mRNA 742570 742601 0.780313 - . ID=CGI_10028365; scaffold419 TRF Tandem_Repeat 742570 742601 50 + . . scaffold419 GLEAN mRNA 750423 750601 0.780313 - . ID=CGI_10028365; scaffold419 TRF Tandem_Repeat 750423 750601 263 + . . scaffold419 GLEAN mRNA 750461 750557 0.780313 - . ID=CGI_10028365; scaffold419 TRF Tandem_Repeat 750461 750557 54 + . . scaffold419 GLEAN mRNA 765117 765302 0.780313 - . ID=CGI_10028365; scaffold419 TRF Tandem_Repeat 765117 765302 331 + . . scaffold419 GLEAN mRNA 770085 770125 0.780313 - . ID=CGI_10028365; scaffold419 TRF Tandem_Repeat 770085 770125 82 + . . scaffold419 GLEAN mRNA 771335 771390 0.780313 - . ID=CGI_10028365; scaffold419 TRF Tandem_Repeat 771335 771390 112 + . . scaffold419 GLEAN mRNA 769977 770087 0.780313 - . ID=CGI_10028365; scaffold419 TRF Tandem_Repeat 769977 770087 177 + . . scaffold419 GLEAN mRNA 769981 770125 0.780313 - . ID=CGI_10028365; scaffold419 TRF Tandem_Repeat 769981 770125 155 + . . scaffold419 GLEAN mRNA 750423 750601 0.651123 + . ID=CGI_10028366; scaffold419 TRF Tandem_Repeat 750423 750601 263 + . . scaffold419 GLEAN mRNA 750461 750557 0.651123 + . ID=CGI_10028366; scaffold419 TRF Tandem_Repeat 750461 750557 54 + . . scaffold419 GLEAN mRNA 808307 808429 0.999675 - . ID=CGI_10028368; scaffold419 WUBlastX LINE_RTE-X 808307 808429 36 + . . scaffold419 GLEAN mRNA 807522 808292 0.999675 - . ID=CGI_10028368; scaffold419 WUBlastX LINE_RTE-X 807522 808292 74 + . . scaffold419 GLEAN mRNA 808182 808316 0.999675 - . ID=CGI_10028368; scaffold419 WUBlastX LINE_RTE-X 808182 808316 45 + . . scaffold419 GLEAN mRNA 807513 807827 0.999675 - . ID=CGI_10028368; scaffold419 WUBlastX LINE_RTE-X 807513 807827 106 + . . scaffold419 GLEAN mRNA 807459 807725 0.999675 - . ID=CGI_10028368; scaffold419 WUBlastX LINE_RTE 807459 807725 37 + . . scaffold419 GLEAN mRNA 815522 815599 1 + . ID=CGI_10028369; scaffold419 TRF Tandem_Repeat 815522 815599 147 + . . scaffold419 GLEAN mRNA 817352 817378 1 + . ID=CGI_10028369; scaffold419 TRF Tandem_Repeat 817352 817378 54 + . . scaffold419 GLEAN mRNA 894899 895255 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_hAT-Tip100 894899 895255 56 + . . scaffold419 GLEAN mRNA 895794 896087 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 895794 896087 34 + . . scaffold419 GLEAN mRNA 896075 896497 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 896075 896497 197 + . . scaffold419 GLEAN mRNA 896641 896829 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 896641 896829 105 + . . scaffold419 GLEAN mRNA 896952 897197 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 896952 897197 108 + . . scaffold419 GLEAN mRNA 897278 897448 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 897278 897448 79 + . . scaffold419 GLEAN mRNA 897556 897705 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_Kolobok 897556 897705 115 + . . scaffold419 GLEAN mRNA 894899 895183 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_hAT-Tip100 894899 895183 86 + . . scaffold419 GLEAN mRNA 894890 895069 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_IS4EU 894743 895069 70 + . . scaffold419 GLEAN mRNA 996243 996311 0.841405 + . ID=CGI_10028381; scaffold419 TRF Tandem_Repeat 996243 996311 138 + . . scaffold419 GLEAN mRNA 1077910 1078035 0.937506 + . ID=CGI_10028386; scaffold419 WUBlastX LINE_L1-Tx1 1077910 1078035 21 + . . scaffold419 GLEAN mRNA 1078623 1078751 0.937506 + . ID=CGI_10028386; scaffold419 WUBlastX LINE_L1-Tx1 1078623 1078751 22 + . . scaffold419 GLEAN mRNA 1078644 1080155 0.937506 + . ID=CGI_10028386; scaffold419 WUBlastX LINE_L1-Tx1 1078644 1080155 381 + . . scaffold419 GLEAN mRNA 1088339 1088367 0.937506 + . ID=CGI_10028386; scaffold419 TRF Tandem_Repeat 1088339 1089588 1821 + . . scaffold419 GLEAN mRNA 1139932 1139977 0.745397 + . ID=CGI_10028387; scaffold419 TRF Tandem_Repeat 1139932 1139977 92 + . . scaffold419 GLEAN mRNA 1153505 1153546 1 + . ID=CGI_10028389; scaffold419 TRF Tandem_Repeat 1153505 1153546 84 + . . scaffold419 GLEAN mRNA 1172390 1172461 0.999027 - . ID=CGI_10028390; scaffold419 TRF Tandem_Repeat 1172390 1172461 121 + . . scaffold419 GLEAN mRNA 1172615 1173320 0.999027 - . ID=CGI_10028390; scaffold419 TRF Tandem_Repeat 1172615 1173320 1168 + . . scaffold419 GLEAN mRNA 1178068 1178137 0.999027 - . ID=CGI_10028390; scaffold419 TRF Tandem_Repeat 1178068 1178137 113 + . . scaffold419 GLEAN mRNA 1174115 1174294 0.999027 - . ID=CGI_10028390; scaffold419 WUBlastX LINE_RTE-X 1174115 1174294 112 - . . scaffold419 GLEAN mRNA 1172390 1172461 0.728723 + . ID=CGI_10028391; scaffold419 TRF Tandem_Repeat 1172390 1172461 121 + . . scaffold419 GLEAN mRNA 1172615 1173320 0.728723 + . ID=CGI_10028391; scaffold419 TRF Tandem_Repeat 1172615 1173320 1168 + . . scaffold419 GLEAN mRNA 1178068 1178137 0.728723 + . ID=CGI_10028391; scaffold419 TRF Tandem_Repeat 1178068 1178137 113 + . . scaffold419 GLEAN mRNA 1174115 1174294 0.728723 + . ID=CGI_10028391; scaffold419 WUBlastX LINE_RTE-X 1174115 1174294 112 - . . scaffold419 GLEAN mRNA 1211336 1211380 0.512525 + . ID=CGI_10028395; scaffold419 TRF Tandem_Repeat 1211336 1211380 90 + . . scaffold419 GLEAN mRNA 1217427 1217480 0.512525 + . ID=CGI_10028395; scaffold419 TRF Tandem_Repeat 1217427 1217480 108 + . . scaffold419 GLEAN mRNA 1226416 1226451 0.512525 + . ID=CGI_10028395; scaffold419 TRF Tandem_Repeat 1226416 1226451 65 + . . scaffold419 GLEAN mRNA 1217427 1217480 0.5 - . ID=CGI_10028396; scaffold419 TRF Tandem_Repeat 1217427 1217480 108 + . . scaffold419 GLEAN mRNA 1226416 1226451 0.5 - . ID=CGI_10028396; scaffold419 TRF Tandem_Repeat 1226416 1226451 65 + . . scaffold419 GLEAN mRNA 1245996 1246042 1 + . ID=CGI_10028398; scaffold419 TRF Tandem_Repeat 1245996 1246042 94 + . . scaffold419 GLEAN mRNA 1269409 1269588 0.922495 + . ID=CGI_10028402; scaffold419 WUBlastX LINE_CR1 1269409 1269588 76 - . . scaffold419 GLEAN mRNA 1269988 1270137 0.922495 + . ID=CGI_10028402; scaffold419 WUBlastX LINE_CR1 1269988 1270137 64 - . . scaffold419 GLEAN mRNA 1269985 1270104 0.922495 + . ID=CGI_10028402; scaffold419 WUBlastX LINE_CR1 1269985 1270104 94 - . . scaffold419 GLEAN mRNA 1273790 1274203 0.922495 + . ID=CGI_10028402; scaffold419 WUBlastX LTR_ERV1 1273790 1274203 23 - . . scaffold419 GLEAN mRNA 1269810 1269941 0.922495 + . ID=CGI_10028402; scaffold419 WUBlastX LINE_CR1 1269810 1269941 22 - . . scaffold419 GLEAN mRNA 1269979 1270245 0.922495 + . ID=CGI_10028402; scaffold419 WUBlastX LINE_CR1 1269979 1270245 60 - . . scaffold419 GLEAN mRNA 1269822 1269932 0.922495 + . ID=CGI_10028402; scaffold419 WUBlastX LINE_CR1 1269822 1269932 26 - . . scaffold419 GLEAN mRNA 1273790 1274203 0.481511 - . ID=CGI_10028403; scaffold419 WUBlastX LTR_ERV1 1273790 1274203 23 - . . scaffold419 GLEAN mRNA 1277072 1277141 0.498748 - . ID=CGI_10028404; scaffold419 TRF Tandem_Repeat 1277072 1277141 68 + . . scaffold419 GLEAN mRNA 1285268 1285309 0.498748 - . ID=CGI_10028404; scaffold419 TRF Tandem_Repeat 1285268 1285309 75 + . . scaffold419 GLEAN mRNA 1277316 1278203 0.498748 - . ID=CGI_10028404; scaffold419 TRF Tandem_Repeat 1277316 1278203 1117 + . . scaffold419 GLEAN mRNA 1396998 1397783 0.531308 - . ID=CGI_10028407; scaffold419 TRF Tandem_Repeat 1396998 1397783 1120 + . . scaffold419 GLEAN mRNA 1413304 1413349 0.531308 - . ID=CGI_10028407; scaffold419 TRF Tandem_Repeat 1413304 1413349 83 + . . scaffold419 GLEAN mRNA 1413307 1413357 0.531308 - . ID=CGI_10028407; scaffold419 TRF Tandem_Repeat 1413307 1413357 59 + . . scaffold419 GLEAN mRNA 1497449 1497486 0.220723 - . ID=CGI_10028409; scaffold419 TRF Tandem_Repeat 1497449 1497486 76 + . . scaffold419 GLEAN mRNA 1534005 1534304 0.691725 - . ID=CGI_10028411; scaffold419 TRF Tandem_Repeat 1534005 1534304 384 + . . scaffold419 GLEAN mRNA 1536257 1536359 0.691725 - . ID=CGI_10028411; scaffold419 TRF Tandem_Repeat 1536257 1536359 127 + . . scaffold419 GLEAN mRNA 1536268 1536427 0.691725 - . ID=CGI_10028411; scaffold419 TRF Tandem_Repeat 1536268 1536427 167 + . . scaffold419 GLEAN mRNA 1536454 1536544 0.691725 - . ID=CGI_10028411; scaffold419 TRF Tandem_Repeat 1536454 1536544 119 + . . scaffold419 GLEAN mRNA 1536426 1536550 0.691725 - . ID=CGI_10028411; scaffold419 TRF Tandem_Repeat 1536426 1536550 109 + . . scaffold419 GLEAN mRNA 1565390 1565434 0.976018 + . ID=CGI_10028412; scaffold419 TRF Tandem_Repeat 1565390 1565434 90 + . . scaffold419 GLEAN mRNA 1567784 1568023 0.976018 + . ID=CGI_10028412; scaffold419 TRF Tandem_Repeat 1567784 1568023 268 + . . scaffold419 GLEAN mRNA 1570557 1570611 0.976018 + . ID=CGI_10028412; scaffold419 TRF Tandem_Repeat 1570557 1570611 110 + . . scaffold419 GLEAN mRNA 1572023 1572068 0.976018 + . ID=CGI_10028412; scaffold419 TRF Tandem_Repeat 1572023 1572068 76 + . . scaffold419 GLEAN mRNA 1572018 1572071 0.976018 + . ID=CGI_10028412; scaffold419 TRF Tandem_Repeat 1572018 1572071 76 + . . scaffold419 GLEAN mRNA 1575484 1575547 0.976018 + . ID=CGI_10028412; scaffold419 TRF Tandem_Repeat 1575484 1575547 128 + . . scaffold419 GLEAN mRNA 1583349 1583402 0.999926 + . ID=CGI_10028413; scaffold419 TRF Tandem_Repeat 1583349 1583402 108 + . . scaffold419 GLEAN mRNA 1583750 1583807 0.999926 + . ID=CGI_10028413; scaffold419 TRF Tandem_Repeat 1583750 1583807 116 + . . scaffold419 GLEAN mRNA 1586198 1586253 0.999926 + . ID=CGI_10028413; scaffold419 TRF Tandem_Repeat 1586198 1586253 112 + . . scaffold419 GLEAN mRNA 1588995 1589129 0.999926 + . ID=CGI_10028413; scaffold419 TRF Tandem_Repeat 1588995 1589129 209 + . . scaffold419 GLEAN mRNA 1599015 1599069 0.999926 + . ID=CGI_10028413; scaffold419 TRF Tandem_Repeat 1599015 1599069 110 + . . scaffold419 GLEAN mRNA 1635813 1635851 0.840317 - . ID=CGI_10028414; scaffold419 TRF Tandem_Repeat 1635813 1635851 78 + . . scaffold419 GLEAN mRNA 1646247 1646323 0.840317 - . ID=CGI_10028414; scaffold419 TRF Tandem_Repeat 1646247 1646323 122 + . . scaffold419 GLEAN mRNA 1660601 1660653 0.437181 - . ID=CGI_10028415; scaffold419 TRF Tandem_Repeat 1660601 1660653 106 + . . scaffold419 GLEAN mRNA 1663178 1663213 0.437181 - . ID=CGI_10028415; scaffold419 TRF Tandem_Repeat 1663178 1663213 72 + . . scaffold419 GLEAN mRNA 1663222 1663319 0.437181 - . ID=CGI_10028415; scaffold419 TRF Tandem_Repeat 1663222 1663319 178 + . . scaffold419 GLEAN mRNA 1665708 1665742 0.437181 - . ID=CGI_10028415; scaffold419 TRF Tandem_Repeat 1665708 1665742 52 + . . scaffold419 GLEAN mRNA 1668593 1668644 0.437181 - . ID=CGI_10028415; scaffold419 TRF Tandem_Repeat 1668593 1668644 95 + . . scaffold419 GLEAN mRNA 1672500 1672566 0.437181 - . ID=CGI_10028415; scaffold419 TRF Tandem_Repeat 1672500 1672566 134 + . . scaffold419 GLEAN mRNA 1686338 1686402 0.437181 - . ID=CGI_10028415; scaffold419 TRF Tandem_Repeat 1686338 1686402 130 + . . scaffold419 GLEAN mRNA 1688096 1688149 0.437181 - . ID=CGI_10028415; scaffold419 TRF Tandem_Repeat 1688096 1688149 108 + . . scaffold419 GLEAN mRNA 1672500 1672566 0.299091 + . ID=CGI_10028416; scaffold419 TRF Tandem_Repeat 1672500 1672566 134 + . . scaffold102 GLEAN mRNA 112009 112052 0.997949 + . ID=CGI_10028421; scaffold102 TRF Tandem_Repeat 112009 112052 88 + . . scaffold102 GLEAN mRNA 119809 120024 0.997949 + . ID=CGI_10028421; scaffold102 TRF Tandem_Repeat 119809 120024 317 + . . scaffold102 GLEAN mRNA 124328 124438 0.997949 + . ID=CGI_10028421; scaffold102 TRF Tandem_Repeat 124328 124438 160 + . . scaffold102 GLEAN mRNA 180737 180774 0.548229 - . ID=CGI_10028425; scaffold102 TRF Tandem_Repeat 180737 180774 62 + . . scaffold102 GLEAN mRNA 242842 242897 0.999993 + . ID=CGI_10028428; scaffold102 TRF Tandem_Repeat 242842 242897 112 + . . scaffold102 GLEAN mRNA 258065 258676 0.910885 - . ID=CGI_10028430; scaffold102 WUBlastX DNA_TcMar-Tc2 258065 258676 77 - . . scaffold102 GLEAN mRNA 257590 257889 0.910885 - . ID=CGI_10028430; scaffold102 WUBlastX DNA_TcMar-Fot1 257590 257889 43 - . . scaffold102 GLEAN mRNA 257608 257847 0.910885 - . ID=CGI_10028430; scaffold102 WUBlastX DNA_TcMar-Tc2 257608 257847 47 - . . scaffold102 GLEAN mRNA 257623 257802 0.910885 - . ID=CGI_10028430; scaffold102 WUBlastX DNA_TcMar-Tc2 257623 257802 48 - . . scaffold102 GLEAN mRNA 276131 276386 0.606671 - . ID=CGI_10028431; scaffold102 TRF Tandem_Repeat 276131 276386 105 + . . scaffold102 GLEAN mRNA 280346 280533 0.606671 - . ID=CGI_10028431; scaffold102 TRF Tandem_Repeat 280346 280533 94 + . . scaffold102 GLEAN mRNA 280345 280564 0.606671 - . ID=CGI_10028431; scaffold102 TRF Tandem_Repeat 280345 280564 246 + . . scaffold102 GLEAN mRNA 280346 280564 0.606671 - . ID=CGI_10028431; scaffold102 TRF Tandem_Repeat 280346 280564 83 + . . scaffold102 GLEAN mRNA 280346 280564 0.606671 - . ID=CGI_10028431; scaffold102 TRF Tandem_Repeat 280346 280564 58 + . . scaffold102 GLEAN mRNA 281124 281185 0.606671 - . ID=CGI_10028431; scaffold102 TRF Tandem_Repeat 281124 281185 72 + . . scaffold102 GLEAN mRNA 281124 281221 0.606671 - . ID=CGI_10028431; scaffold102 TRF Tandem_Repeat 281124 281221 63 + . . scaffold102 GLEAN mRNA 281893 281940 0.606671 - . ID=CGI_10028431; scaffold102 TRF Tandem_Repeat 281893 281940 51 + . . scaffold102 GLEAN mRNA 286437 286570 0.606671 - . ID=CGI_10028431; scaffold102 TRF Tandem_Repeat 286437 286570 110 + . . scaffold102 GLEAN mRNA 300250 300410 0.606671 - . ID=CGI_10028431; scaffold102 TRF Tandem_Repeat 300250 300410 97 + . . scaffold102 GLEAN mRNA 307554 307596 0.651166 - . ID=CGI_10028432; scaffold102 TRF Tandem_Repeat 307554 307596 59 + . . scaffold102 GLEAN mRNA 308196 308538 0.651166 - . ID=CGI_10028432; scaffold102 TRF Tandem_Repeat 308196 308538 332 + . . scaffold102 GLEAN mRNA 367654 368589 0.999999 - . ID=CGI_10028433; scaffold102 WUBlastX LINE_RTE-X 367654 368661 227 - . . scaffold102 GLEAN mRNA 382630 382639 0.835259 + . ID=CGI_10028434; scaffold102 TRF Tandem_Repeat 382630 382765 114 + . . scaffold102 GLEAN mRNA 388766 389002 1 - . ID=CGI_10028435; scaffold102 TRF Tandem_Repeat 388766 389002 287 + . . scaffold102 GLEAN mRNA 448571 448619 0.978163 + . ID=CGI_10028437; scaffold102 TRF Tandem_Repeat 448571 448619 98 + . . scaffold102 GLEAN mRNA 503466 504240 0.999676 - . ID=CGI_10028439; scaffold102 TRF Tandem_Repeat 503466 504240 891 + . . scaffold102 GLEAN mRNA 504271 504310 0.999676 - . ID=CGI_10028439; scaffold102 TRF Tandem_Repeat 504271 504310 71 + . . scaffold102 GLEAN mRNA 511588 511718 0.999676 - . ID=CGI_10028439; scaffold102 TRF Tandem_Repeat 511588 511718 190 + . . scaffold102 GLEAN mRNA 512839 512865 0.999676 - . ID=CGI_10028439; scaffold102 TRF Tandem_Repeat 512839 512865 54 + . . scaffold102 GLEAN mRNA 517819 517986 0.999676 - . ID=CGI_10028439; scaffold102 TRF Tandem_Repeat 517819 517986 178 + . . scaffold102 GLEAN mRNA 517819 518287 0.999676 - . ID=CGI_10028439; scaffold102 TRF Tandem_Repeat 517819 518287 410 + . . scaffold102 GLEAN mRNA 517816 518280 0.999676 - . ID=CGI_10028439; scaffold102 TRF Tandem_Repeat 517816 518280 434 + . . scaffold102 GLEAN mRNA 517994 518287 0.999676 - . ID=CGI_10028439; scaffold102 TRF Tandem_Repeat 517994 518287 260 + . . scaffold102 GLEAN mRNA 522611 522640 0.999676 - . ID=CGI_10028439; scaffold102 TRF Tandem_Repeat 522611 522640 60 + . . scaffold102 GLEAN mRNA 524517 524600 0.999676 - . ID=CGI_10028439; scaffold102 TRF Tandem_Repeat 524517 524600 96 + . . scaffold102 GLEAN mRNA 528646 528685 0.999676 - . ID=CGI_10028439; scaffold102 TRF Tandem_Repeat 528646 528685 64 + . . scaffold102 GLEAN mRNA 533438 533463 0.999676 - . ID=CGI_10028439; scaffold102 TRF Tandem_Repeat 533438 533463 52 + . . scaffold102 GLEAN mRNA 560131 560337 1 + . ID=CGI_10028440; scaffold102 TRF Tandem_Repeat 560131 560337 274 + . . scaffold102 GLEAN mRNA 622844 622984 0.999968 + . ID=CGI_10028443; scaffold102 TRF Tandem_Repeat 622844 622984 117 + . . scaffold102 GLEAN mRNA 623556 623584 0.999968 + . ID=CGI_10028443; scaffold102 TRF Tandem_Repeat 623556 623584 58 + . . scaffold102 GLEAN mRNA 653090 653115 0.499984 + . ID=CGI_10028445; scaffold102 TRF Tandem_Repeat 653090 653115 52 + . . scaffold102 GLEAN mRNA 643973 644050 0.499984 + . ID=CGI_10028445; scaffold102 WUBlastX LTR_Ngaro 643934 644050 57 + . . scaffold102 GLEAN mRNA 644449 644808 0.499984 + . ID=CGI_10028445; scaffold102 WUBlastX LTR_Ngaro 644449 644808 212 + . . scaffold102 GLEAN mRNA 644778 645155 0.499984 + . ID=CGI_10028445; scaffold102 WUBlastX LTR_Ngaro 644778 645155 94 + . . scaffold102 GLEAN mRNA 644393 644446 0.499984 + . ID=CGI_10028445; scaffold102 WUBlastX LTR_Ngaro 644393 644446 24 + . . scaffold102 GLEAN mRNA 643973 644107 0.499984 + . ID=CGI_10028445; scaffold102 WUBlastX LTR_Ngaro 643949 644107 48 + . . scaffold102 GLEAN mRNA 661017 661070 0.499984 + . ID=CGI_10028445; scaffold102 TRF Tandem_Repeat 661017 661070 72 + . . scaffold102 GLEAN mRNA 661056 661120 0.499984 + . ID=CGI_10028445; scaffold102 TRF Tandem_Repeat 661056 661120 103 + . . scaffold102 GLEAN mRNA 661017 661120 0.499984 + . ID=CGI_10028445; scaffold102 TRF Tandem_Repeat 661017 661120 91 + . . scaffold102 GLEAN mRNA 674479 674591 0.999999 + . ID=CGI_10028446; scaffold102 TRF Tandem_Repeat 674479 674591 52 + . . scaffold102 GLEAN mRNA 674182 674454 0.999999 + . ID=CGI_10028446; scaffold102 WUBlastX LTR_Gypsy 673288 674454 646 + . . scaffold102 GLEAN mRNA 713371 714630 0.984575 + . ID=CGI_10028447; scaffold102 WUBlastX LTR_Pao 713371 714630 130 + . . scaffold102 GLEAN mRNA 714623 714823 0.984575 + . ID=CGI_10028447; scaffold102 WUBlastX LTR_Pao 714623 714823 72 + . . scaffold102 GLEAN mRNA 810023 810047 1 - . ID=CGI_10028449; scaffold102 TRF Tandem_Repeat 810023 810047 50 + . . scaffold102 GLEAN mRNA 814735 814781 1 - . ID=CGI_10028449; scaffold102 TRF Tandem_Repeat 814735 814781 94 + . . scaffold102 GLEAN mRNA 815596 815702 1 - . ID=CGI_10028449; scaffold102 TRF Tandem_Repeat 815596 815702 169 + . . scaffold102 GLEAN mRNA 818565 818607 1 - . ID=CGI_10028449; scaffold102 TRF Tandem_Repeat 818565 818607 54 + . . scaffold102 GLEAN mRNA 859006 859089 0.999676 - . ID=CGI_10028455; scaffold102 TRF Tandem_Repeat 859006 859089 168 + . . scaffold102 GLEAN mRNA 859457 859550 0.999676 - . ID=CGI_10028455; scaffold102 TRF Tandem_Repeat 859457 859550 109 + . . scaffold102 GLEAN mRNA 859743 859874 0.999676 - . ID=CGI_10028455; scaffold102 TRF Tandem_Repeat 859743 859874 131 + . . scaffold102 GLEAN mRNA 859951 860042 0.999676 - . ID=CGI_10028455; scaffold102 TRF Tandem_Repeat 859951 860042 112 + . . scaffold102 GLEAN mRNA 862758 862792 0.999676 - . ID=CGI_10028455; scaffold102 TRF Tandem_Repeat 862758 862792 70 + . . scaffold102 GLEAN mRNA 876763 876818 0.380475 - . ID=CGI_10028456; scaffold102 TRF Tandem_Repeat 876763 876818 112 + . . scaffold102 GLEAN mRNA 876830 876867 0.380475 - . ID=CGI_10028456; scaffold102 TRF Tandem_Repeat 876830 876867 76 + . . scaffold102 GLEAN mRNA 900336 900422 0.380475 - . ID=CGI_10028456; scaffold102 TRF Tandem_Repeat 900336 900422 70 + . . scaffold102 GLEAN mRNA 900517 900626 0.380475 - . ID=CGI_10028456; scaffold102 TRF Tandem_Repeat 900517 900626 96 + . . scaffold102 GLEAN mRNA 900697 900862 0.380475 - . ID=CGI_10028456; scaffold102 TRF Tandem_Repeat 900697 900862 197 + . . scaffold102 GLEAN mRNA 917939 917984 0.813858 - . ID=CGI_10028457; scaffold102 TRF Tandem_Repeat 917939 917984 60 + . . scaffold102 GLEAN mRNA 932316 932432 0.678096 - . ID=CGI_10028458; scaffold102 WUBlastX LINE_R2-Hero 932316 932432 25 - . . scaffold102 GLEAN mRNA 933279 933713 0.678096 - . ID=CGI_10028458; scaffold102 WUBlastX LTR_Gypsy 933279 933713 94 - . . scaffold102 GLEAN mRNA 936720 936775 0.678096 - . ID=CGI_10028458; scaffold102 TRF Tandem_Repeat 936720 936775 60 + . . scaffold102 GLEAN mRNA 937061 937175 0.678096 - . ID=CGI_10028458; scaffold102 TRF Tandem_Repeat 937061 937175 85 + . . scaffold102 GLEAN mRNA 968673 968706 0.838657 - . ID=CGI_10028460; scaffold102 TRF Tandem_Repeat 968673 968706 59 + . . scaffold102 GLEAN mRNA 981958 982000 0.838657 - . ID=CGI_10028460; scaffold102 TRF Tandem_Repeat 981958 982000 86 + . . scaffold102 GLEAN mRNA 971367 971495 0.838657 - . ID=CGI_10028460; scaffold102 WUBlastX LINE_RTE-X 971367 971495 69 - . . scaffold102 GLEAN mRNA 971349 971549 0.838657 - . ID=CGI_10028460; scaffold102 WUBlastX LINE_RTE-X 971349 971549 27 - . . scaffold102 GLEAN mRNA 970888 971283 0.838657 - . ID=CGI_10028460; scaffold102 WUBlastX LINE_RTE-X 970888 971283 74 - . . scaffold102 GLEAN mRNA 971289 971501 0.838657 - . ID=CGI_10028460; scaffold102 WUBlastX LINE_RTE-X 971289 971501 50 - . . scaffold102 GLEAN mRNA 971394 971495 0.838657 - . ID=CGI_10028460; scaffold102 WUBlastX LINE_RTE-X 971394 971495 73 - . . scaffold102 GLEAN mRNA 986202 986226 0.838657 - . ID=CGI_10028460; scaffold102 TRF Tandem_Repeat 986202 986226 50 + . . scaffold102 GLEAN mRNA 993135 993169 0.838657 - . ID=CGI_10028460; scaffold102 TRF Tandem_Repeat 993135 993169 70 + . . scaffold102 GLEAN mRNA 984298 984411 0.838657 - . ID=CGI_10028460; scaffold102 WUBlastX LINE_RTE-BovB 984298 984411 42 + . . scaffold102 GLEAN mRNA 984700 985005 0.838657 - . ID=CGI_10028460; scaffold102 WUBlastX LINE_RTE-BovB 984700 985005 171 + . . scaffold102 GLEAN mRNA 984589 985008 0.838657 - . ID=CGI_10028460; scaffold102 WUBlastX LINE_RTE-BovB 984589 985008 72 + . . scaffold102 GLEAN mRNA 984697 985278 0.838657 - . ID=CGI_10028460; scaffold102 WUBlastX LINE_RTE-BovB 984697 985278 131 + . . scaffold102 GLEAN mRNA 1020765 1020999 1 + . ID=CGI_10028461; scaffold102 TRF Tandem_Repeat 1020765 1020999 373 + . . scaffold102 GLEAN mRNA 1020797 1020997 1 + . ID=CGI_10028461; scaffold102 TRF Tandem_Repeat 1020797 1020997 103 + . . scaffold102 GLEAN mRNA 1096574 1096699 0.998596 + . ID=CGI_10028470; scaffold102 WUBlastX LTR_Gypsy 1096574 1096699 35 + . . scaffold102 GLEAN mRNA 1095942 1096169 0.998596 + . ID=CGI_10028470; scaffold102 WUBlastX LTR_Gypsy 1095900 1096169 66 + . . scaffold102 GLEAN mRNA 1097850 1097899 0.998596 + . ID=CGI_10028470; scaffold102 TRF Tandem_Repeat 1097850 1097899 66 + . . scaffold102 GLEAN mRNA 1099900 1100980 0.998596 + . ID=CGI_10028470; scaffold102 TRF Tandem_Repeat 1099900 1100980 1304 + . . scaffold102 GLEAN mRNA 1123144 1124696 0.99892 + . ID=CGI_10028472; scaffold102 TRF Tandem_Repeat 1123144 1124696 449 + . . scaffold102 GLEAN mRNA 1149339 1149926 0.999233 - . ID=CGI_10028474; scaffold102 WUBlastX LINE_R2-Hero 1149339 1149926 256 - . . scaffold102 GLEAN mRNA 1149148 1149339 0.999233 - . ID=CGI_10028474; scaffold102 WUBlastX LINE_R2-Hero 1149148 1149339 71 - . . scaffold102 GLEAN mRNA 1183812 1183864 0.600219 + . ID=CGI_10028480; scaffold102 TRF Tandem_Repeat 1183812 1183864 106 + . . scaffold102 GLEAN mRNA 1262293 1262347 0.999995 - . ID=CGI_10028487; scaffold102 TRF Tandem_Repeat 1262293 1262347 83 + . . scaffold102 GLEAN mRNA 1263671 1263737 0.999995 - . ID=CGI_10028487; scaffold102 TRF Tandem_Repeat 1263671 1263737 89 + . . scaffold102 GLEAN mRNA 1264232 1264275 0.999995 - . ID=CGI_10028487; scaffold102 TRF Tandem_Repeat 1264232 1264275 88 + . . scaffold102 GLEAN mRNA 1264273 1264302 0.999995 - . ID=CGI_10028487; scaffold102 TRF Tandem_Repeat 1264273 1264302 60 + . . scaffold102 GLEAN mRNA 1264481 1264526 0.999995 - . ID=CGI_10028487; scaffold102 TRF Tandem_Repeat 1264481 1264526 83 + . . scaffold102 GLEAN mRNA 1266578 1266644 0.999995 - . ID=CGI_10028487; scaffold102 TRF Tandem_Repeat 1266578 1266644 89 + . . scaffold102 GLEAN mRNA 1273723 1274173 0.999387 - . ID=CGI_10028488; scaffold102 TRF Tandem_Repeat 1273723 1274173 717 + . . scaffold102 GLEAN mRNA 1275063 1275088 0.999387 - . ID=CGI_10028488; scaffold102 TRF Tandem_Repeat 1275063 1275088 52 + . . scaffold102 GLEAN mRNA 1279126 1279314 0.999387 - . ID=CGI_10028488; scaffold102 WUBlastX LINE_RTE-BovB 1279126 1279314 50 + . . scaffold102 GLEAN mRNA 1278860 1279117 0.999387 - . ID=CGI_10028488; scaffold102 WUBlastX LINE_RTE-BovB 1278860 1279117 104 + . . scaffold102 GLEAN mRNA 1278896 1279102 0.999387 - . ID=CGI_10028488; scaffold102 WUBlastX LINE_RTE-BovB 1278896 1279102 116 + . . scaffold102 GLEAN mRNA 1280117 1280311 0.999387 - . ID=CGI_10028488; scaffold102 WUBlastX LINE_RTE-BovB 1280117 1280311 34 + . . scaffold102 GLEAN mRNA 1279856 1280041 0.999387 - . ID=CGI_10028488; scaffold102 WUBlastX DNA_Harbinger 1279856 1280041 116 + . . scaffold102 GLEAN mRNA 1280382 1280534 0.999387 - . ID=CGI_10028488; scaffold102 WUBlastX LINE_RTE-BovB 1280382 1280534 28 + . . scaffold102 GLEAN mRNA 1279108 1279497 0.999387 - . ID=CGI_10028488; scaffold102 WUBlastX LINE_RTE-BovB 1279108 1279497 39 + . . scaffold102 GLEAN mRNA 1279108 1279260 0.999387 - . ID=CGI_10028488; scaffold102 WUBlastX LINE_RTE-BovB 1279108 1279260 115 + . . scaffold102 GLEAN mRNA 1279275 1279418 0.999387 - . ID=CGI_10028488; scaffold102 WUBlastX LINE_RTE-BovB 1279275 1279418 45 + . . scaffold102 GLEAN mRNA 1286553 1286829 0.410523 + . ID=CGI_10028489; scaffold102 TRF Tandem_Repeat 1286553 1286829 315 + . . scaffold102 GLEAN mRNA 1288290 1288336 0.410523 + . ID=CGI_10028489; scaffold102 TRF Tandem_Repeat 1288290 1288336 94 + . . scaffold102 GLEAN mRNA 1298207 1298505 0.994691 - . ID=CGI_10028491; scaffold102 TRF Tandem_Repeat 1298207 1298505 285 + . . scaffold102 GLEAN mRNA 1298619 1298905 0.994691 - . ID=CGI_10028491; scaffold102 TRF Tandem_Repeat 1298619 1298905 324 + . . scaffold102 GLEAN mRNA 1298685 1298856 0.994691 - . ID=CGI_10028491; scaffold102 TRF Tandem_Repeat 1298685 1298856 111 + . . scaffold102 GLEAN mRNA 1299107 1299170 0.994691 - . ID=CGI_10028491; scaffold102 TRF Tandem_Repeat 1299107 1299170 119 + . . scaffold102 GLEAN mRNA 1300999 1301137 0.994691 - . ID=CGI_10028491; scaffold102 TRF Tandem_Repeat 1300999 1301137 226 + . . scaffold102 GLEAN mRNA 1305084 1305112 0.994691 - . ID=CGI_10028491; scaffold102 TRF Tandem_Repeat 1305084 1305112 58 + . . scaffold102 GLEAN mRNA 1305084 1305112 1 + . ID=CGI_10028492; scaffold102 TRF Tandem_Repeat 1305084 1305112 58 + . . scaffold102 GLEAN mRNA 1349720 1349775 0.999676 + . ID=CGI_10028495; scaffold102 TRF Tandem_Repeat 1349720 1349775 76 + . . scaffold102 GLEAN mRNA 1352593 1352651 0.999676 + . ID=CGI_10028495; scaffold102 TRF Tandem_Repeat 1352593 1352651 118 + . . scaffold102 GLEAN mRNA 1354904 1354950 0.999676 + . ID=CGI_10028495; scaffold102 TRF Tandem_Repeat 1354904 1354950 58 + . . scaffold102 GLEAN mRNA 1354905 1354950 0.999676 + . ID=CGI_10028495; scaffold102 TRF Tandem_Repeat 1354905 1354950 65 + . . scaffold102 GLEAN mRNA 1397068 1397119 0.890801 + . ID=CGI_10028497; scaffold102 TRF Tandem_Repeat 1397068 1397119 104 + . . scaffold102 GLEAN mRNA 1462342 1462394 0.717679 + . ID=CGI_10028500; scaffold102 TRF Tandem_Repeat 1462342 1462394 88 + . . scaffold102 GLEAN mRNA 1463912 1463936 0.717679 + . ID=CGI_10028500; scaffold102 TRF Tandem_Repeat 1463912 1463936 50 + . . scaffold102 GLEAN mRNA 1518795 1519418 0.864112 + . ID=CGI_10028504; scaffold102 TRF Tandem_Repeat 1518795 1519418 809 + . . scaffold102 GLEAN mRNA 1518795 1519693 0.864112 + . ID=CGI_10028504; scaffold102 TRF Tandem_Repeat 1518795 1519693 959 + . . scaffold102 GLEAN mRNA 1519427 1519693 0.864112 + . ID=CGI_10028504; scaffold102 TRF Tandem_Repeat 1519427 1519693 296 + . . scaffold102 GLEAN mRNA 1539634 1539864 0.3501 - . ID=CGI_10028505; scaffold102 TRF Tandem_Repeat 1539634 1539864 333 + . . scaffold102 GLEAN mRNA 1538400 1538654 0.3501 - . ID=CGI_10028505; scaffold102 WUBlastX DNA_hAT-Ac 1538400 1538654 70 - . . scaffold102 GLEAN mRNA 1538274 1538573 0.3501 - . ID=CGI_10028505; scaffold102 WUBlastX DNA_hAT-Ac 1538274 1538573 64 - . . scaffold102 GLEAN mRNA 1538379 1538609 0.3501 - . ID=CGI_10028505; scaffold102 WUBlastX DNA_hAT-Ac 1538379 1538609 81 - . . scaffold102 GLEAN mRNA 1538666 1538815 0.3501 - . ID=CGI_10028505; scaffold102 WUBlastX DNA_hAT 1538666 1538815 55 - . . scaffold102 GLEAN mRNA 1651871 1651916 0.99779 + . ID=CGI_10028511; scaffold102 TRF Tandem_Repeat 1651871 1651916 92 + . . scaffold102 GLEAN mRNA 1656304 1656643 0.99779 + . ID=CGI_10028511; scaffold102 TRF Tandem_Repeat 1656304 1656643 419 + . . scaffold102 GLEAN mRNA 1658444 1658490 0.99779 + . ID=CGI_10028511; scaffold102 TRF Tandem_Repeat 1658444 1658490 94 + . . scaffold102 GLEAN mRNA 1666774 1668126 0.990878 + . ID=CGI_10028512; scaffold102 TRF Tandem_Repeat 1666774 1668126 1726 + . . scaffold102 GLEAN mRNA 1666791 1668126 0.990878 + . ID=CGI_10028512; scaffold102 TRF Tandem_Repeat 1666791 1668126 1969 + . . scaffold102 GLEAN mRNA 1666774 1668126 0.990878 + . ID=CGI_10028512; scaffold102 TRF Tandem_Repeat 1666774 1668126 1975 + . . scaffold102 GLEAN mRNA 1668678 1668908 0.990878 + . ID=CGI_10028512; scaffold102 TRF Tandem_Repeat 1668678 1668908 372 + . . scaffold102 GLEAN mRNA 1669115 1669184 0.990878 + . ID=CGI_10028512; scaffold102 TRF Tandem_Repeat 1669115 1669184 95 + . . scaffold102 GLEAN mRNA 1675411 1675457 0.996286 + . ID=CGI_10028513; scaffold102 TRF Tandem_Repeat 1675411 1675457 94 + . . scaffold102 GLEAN mRNA 1679100 1679571 0.996286 + . ID=CGI_10028513; scaffold102 TRF Tandem_Repeat 1679100 1679571 597 + . . scaffold102 GLEAN mRNA 1679100 1679571 0.996286 + . ID=CGI_10028513; scaffold102 TRF Tandem_Repeat 1679100 1679571 701 + . . scaffold102 GLEAN mRNA 1683939 1683982 1 - . ID=CGI_10028514; scaffold102 TRF Tandem_Repeat 1683939 1683982 88 + . . scaffold102 GLEAN mRNA 1688674 1688718 1 - . ID=CGI_10028514; scaffold102 TRF Tandem_Repeat 1688674 1688718 90 + . . scaffold1024 GLEAN mRNA 1982 2029 0.996423 - . ID=CGI_10028517; scaffold1024 TRF Tandem_Repeat 1982 2029 96 + . . scaffold1024 GLEAN mRNA 7646 8072 0.996423 - . ID=CGI_10028517; scaffold1024 TRF Tandem_Repeat 7646 8072 547 + . . scaffold1024 GLEAN mRNA 18755 18802 0.996423 - . ID=CGI_10028517; scaffold1024 TRF Tandem_Repeat 18755 18802 51 + . . scaffold1024 GLEAN mRNA 20187 21998 0.996423 - . ID=CGI_10028517; scaffold1024 WUBlastX LINE_CR1-L2 20187 22037 963 - . . scaffold1024 GLEAN mRNA 32169 32202 0.99814 - . ID=CGI_10028518; scaffold1024 TRF Tandem_Repeat 32169 32202 52 + . . scaffold1024 GLEAN mRNA 24193 24510 0.99814 - . ID=CGI_10028518; scaffold1024 WUBlastX LINE_L2 24187 24510 101 - . . scaffold1024 GLEAN mRNA 33437 33500 0.99814 - . ID=CGI_10028518; scaffold1024 TRF Tandem_Repeat 33437 33500 101 + . . scaffold1024 GLEAN mRNA 33613 33656 0.99814 - . ID=CGI_10028518; scaffold1024 TRF Tandem_Repeat 33613 33656 70 + . . scaffold1024 GLEAN mRNA 33805 33853 0.99814 - . ID=CGI_10028518; scaffold1024 TRF Tandem_Repeat 33805 33853 89 + . . scaffold1024 GLEAN mRNA 71031 71579 0.389681 + . ID=CGI_10028519; scaffold1024 WUBlastX LINE_Jockey 71031 71579 128 + . . scaffold1024 GLEAN mRNA 70811 71029 0.389681 + . ID=CGI_10028519; scaffold1024 WUBlastX LINE_CR1 70775 71029 195 + . . scaffold1024 GLEAN mRNA 81368 81586 0.389681 + . ID=CGI_10028519; scaffold1024 WUBlastX RC_Helitron 81368 81586 64 - . . scaffold1024 GLEAN mRNA 71118 72401 0.389681 + . ID=CGI_10028519; scaffold1024 WUBlastX LINE_CR1 71118 72401 1021 + . . scaffold1024 GLEAN mRNA 90126 90173 0.557329 - . ID=CGI_10028520; scaffold1024 TRF Tandem_Repeat 90126 90173 69 + . . scaffold1024 GLEAN mRNA 97818 98165 0.557329 - . ID=CGI_10028520; scaffold1024 WUBlastX DNA_Zator 97818 98165 135 + . . scaffold1024 GLEAN mRNA 92033 92335 0.557329 - . ID=CGI_10028520; scaffold1024 WUBlastX LTR_Gypsy 92033 92335 22 - . . scaffold1024 GLEAN mRNA 97131 97394 0.557329 - . ID=CGI_10028520; scaffold1024 WUBlastX DNA_Maverick 97131 97394 65 + . . scaffold1024 GLEAN mRNA 135326 135408 0.992138 - . ID=CGI_10028523; scaffold1024 WUBlastX DNA_hAT-Hobo 135326 135682 20 + . . scaffold1024 GLEAN mRNA 192548 192607 0.99909 + . ID=CGI_10028528; scaffold1024 TRF Tandem_Repeat 192548 192607 111 + . . scaffold1024 GLEAN mRNA 194525 195262 0.99909 + . ID=CGI_10028528; scaffold1024 TRF Tandem_Repeat 194525 195262 1086 + . . scaffold1024 GLEAN mRNA 195473 195503 0.99909 + . ID=CGI_10028528; scaffold1024 TRF Tandem_Repeat 195473 195503 53 + . . scaffold1024 GLEAN mRNA 206377 206519 0.99909 + . ID=CGI_10028528; scaffold1024 TRF Tandem_Repeat 206377 206519 214 + . . scaffold1024 GLEAN mRNA 220100 220142 0.99909 + . ID=CGI_10028528; scaffold1024 TRF Tandem_Repeat 220100 220142 86 + . . scaffold1024 GLEAN mRNA 222421 222519 0.99909 + . ID=CGI_10028528; scaffold1024 WUBlastX DNA_TcMar-Tc1 222421 222519 34 - . . scaffold1024 GLEAN mRNA 222436 222534 0.99909 + . ID=CGI_10028528; scaffold1024 WUBlastX DNA_TcMar-Tc1 222436 222534 46 - . . scaffold1024 GLEAN mRNA 223040 223327 0.99909 + . ID=CGI_10028528; scaffold1024 WUBlastX DNA_TcMar-Tc1 223040 223327 97 - . . scaffold1024 GLEAN mRNA 223160 223306 0.99909 + . ID=CGI_10028528; scaffold1024 WUBlastX DNA_TcMar-Tc1 223160 223306 107 - . . scaffold1024 GLEAN mRNA 223342 224070 0.99909 + . ID=CGI_10028528; scaffold1024 WUBlastX DNA_TcMar-Tc1 223342 224070 133 - . . scaffold1024 GLEAN mRNA 242336 242376 0.99909 + . ID=CGI_10028528; scaffold1024 TRF Tandem_Repeat 242336 242376 82 + . . scaffold1024 GLEAN mRNA 262911 263018 0.999675 - . ID=CGI_10028529; scaffold1024 WUBlastX DNA_TcMar-Tc1 262911 263018 70 - . . scaffold1024 GLEAN mRNA 262743 263018 0.999675 - . ID=CGI_10028529; scaffold1024 WUBlastX DNA_TcMar-Tc1 262743 263018 59 - . . scaffold1024 GLEAN mRNA 292205 292324 0.666664 - . ID=CGI_10028532; scaffold1024 TRF Tandem_Repeat 292205 292324 65 + . . scaffold1024 GLEAN mRNA 289749 289997 0.666664 - . ID=CGI_10028532; scaffold1024 WUBlastX DNA_Kolobok 289749 289997 110 + . . scaffold1024 GLEAN mRNA 293079 293225 0.666664 - . ID=CGI_10028532; scaffold1024 WUBlastX DNA_Kolobok 293079 293225 26 - . . scaffold1024 GLEAN mRNA 292995 293183 0.666664 - . ID=CGI_10028532; scaffold1024 WUBlastX DNA_Kolobok 292995 293183 37 - . . scaffold1024 GLEAN mRNA 293810 294013 0.666664 - . ID=CGI_10028532; scaffold1024 WUBlastX DNA_Kolobok 293810 294013 62 - . . scaffold1024 GLEAN mRNA 295830 296171 0.666664 - . ID=CGI_10028532; scaffold1024 WUBlastX DNA_Kolobok 295830 296171 101 - . . scaffold1024 GLEAN mRNA 295182 295469 0.666664 - . ID=CGI_10028532; scaffold1024 WUBlastX DNA_Kolobok 295182 295469 71 - . . scaffold1024 GLEAN mRNA 448652 448682 0.990168 - . ID=CGI_10028534; scaffold1024 TRF Tandem_Repeat 448652 448682 62 + . . scaffold1024 GLEAN mRNA 452366 452486 0.990168 - . ID=CGI_10028534; scaffold1024 TRF Tandem_Repeat 452366 452486 118 + . . scaffold1024 GLEAN mRNA 459871 459908 0.933824 + . ID=CGI_10028535; scaffold1024 TRF Tandem_Repeat 459871 459908 53 + . . scaffold1024 GLEAN mRNA 464602 464661 0.933824 + . ID=CGI_10028535; scaffold1024 TRF Tandem_Repeat 464602 464661 63 + . . scaffold1024 GLEAN mRNA 464692 465486 0.933824 + . ID=CGI_10028535; scaffold1024 TRF Tandem_Repeat 464692 465486 1117 + . . scaffold1024 GLEAN mRNA 473418 473448 0.933824 + . ID=CGI_10028535; scaffold1024 TRF Tandem_Repeat 473418 473448 62 + . . scaffold1024 GLEAN mRNA 487485 488184 0.933824 + . ID=CGI_10028535; scaffold1024 TRF Tandem_Repeat 487485 488184 1025 + . . scaffold1024 GLEAN mRNA 509782 509838 0.999949 - . ID=CGI_10028537; scaffold1024 TRF Tandem_Repeat 509782 509838 114 + . . scaffold1024 GLEAN mRNA 573302 573343 0.729153 + . ID=CGI_10028538; scaffold1024 TRF Tandem_Repeat 573302 573343 84 + . . scaffold1024 GLEAN mRNA 573301 573349 0.729153 + . ID=CGI_10028538; scaffold1024 TRF Tandem_Repeat 573301 573349 66 + . . scaffold1024 GLEAN mRNA 577225 577541 0.729153 + . ID=CGI_10028538; scaffold1024 TRF Tandem_Repeat 577225 577541 431 + . . scaffold1024 GLEAN mRNA 582140 582205 0.729153 + . ID=CGI_10028538; scaffold1024 TRF Tandem_Repeat 582140 582205 125 + . . scaffold1024 GLEAN mRNA 598051 598150 0.992443 + . ID=CGI_10028539; scaffold1024 TRF Tandem_Repeat 598051 598150 193 + . . scaffold1024 GLEAN mRNA 600020 600063 0.992443 + . ID=CGI_10028539; scaffold1024 TRF Tandem_Repeat 600020 600063 88 + . . scaffold1024 GLEAN mRNA 601482 601538 0.992443 + . ID=CGI_10028539; scaffold1024 TRF Tandem_Repeat 601482 601538 96 + . . scaffold1024 GLEAN mRNA 654958 654982 0.738561 + . ID=CGI_10028541; scaffold1024 TRF Tandem_Repeat 654958 654982 50 + . . scaffold1024 GLEAN mRNA 677793 677915 0.701647 - . ID=CGI_10028542; scaffold1024 WUBlastX LTR_Gypsy 677793 677915 20 - . . scaffold1024 GLEAN mRNA 682225 682350 0.701647 - . ID=CGI_10028542; scaffold1024 WUBlastX LTR_Gypsy 682225 682350 22 - . . scaffold1024 GLEAN mRNA 681482 681706 0.701647 - . ID=CGI_10028542; scaffold1024 WUBlastX LTR_Gypsy 681482 681706 38 - . . scaffold1024 GLEAN mRNA 736468 736651 0.998335 - . ID=CGI_10028545; scaffold1024 TRF Tandem_Repeat 736468 736651 69 + . . scaffold1024 GLEAN mRNA 736458 736912 0.998335 - . ID=CGI_10028545; scaffold1024 TRF Tandem_Repeat 736458 736912 802 + . . scaffold1024 GLEAN mRNA 819786 819810 0.741074 - . ID=CGI_10028548; scaffold1024 TRF Tandem_Repeat 819786 819810 50 + . . scaffold1024 GLEAN mRNA 849266 849297 1 + . ID=CGI_10028549; scaffold1024 TRF Tandem_Repeat 849266 849297 64 + . . scaffold1024 GLEAN mRNA 851311 851780 1 + . ID=CGI_10028549; scaffold1024 TRF Tandem_Repeat 851311 851780 127 + . . scaffold1024 GLEAN mRNA 851249 851760 1 + . ID=CGI_10028549; scaffold1024 TRF Tandem_Repeat 851249 851760 618 + . . scaffold1024 GLEAN mRNA 852061 852090 1 + . ID=CGI_10028549; scaffold1024 TRF Tandem_Repeat 852061 852090 60 + . . scaffold1024 GLEAN mRNA 851668 852007 1 + . ID=CGI_10028549; scaffold1024 TRF Tandem_Repeat 851668 852007 202 + . . scaffold1024 GLEAN mRNA 869229 869285 0.998162 + . ID=CGI_10028551; scaffold1024 TRF Tandem_Repeat 869229 869285 114 + . . scaffold1024 GLEAN mRNA 896943 896963 0.999372 - . ID=CGI_10028552; scaffold1024 WUBlastX LINE_CR1 896943 897038 24 - . . scaffold1024 GLEAN mRNA 919037 919088 0.333189 - . ID=CGI_10028553; scaffold1024 TRF Tandem_Repeat 919037 919088 104 + . . scaffold1024 GLEAN mRNA 987865 987916 0.999235 - . ID=CGI_10028555; scaffold1024 TRF Tandem_Repeat 987865 987916 59 + . . scaffold1024 GLEAN mRNA 987865 987916 0.999235 - . ID=CGI_10028555; scaffold1024 TRF Tandem_Repeat 987865 987916 59 + . . scaffold1024 GLEAN mRNA 987864 987907 0.999235 - . ID=CGI_10028555; scaffold1024 TRF Tandem_Repeat 987864 987907 52 + . . scaffold1024 GLEAN mRNA 991917 991957 0.999235 - . ID=CGI_10028555; scaffold1024 TRF Tandem_Repeat 991917 991957 82 + . . scaffold1024 GLEAN mRNA 990242 990862 0.999235 - . ID=CGI_10028555; scaffold1024 WUBlastX LTR_Gypsy 990242 990862 150 + . . scaffold1024 GLEAN mRNA 989733 989852 0.999235 - . ID=CGI_10028555; scaffold1024 WUBlastX LTR_Gypsy 989733 989852 23 + . . scaffold1024 GLEAN mRNA 990126 990341 0.999235 - . ID=CGI_10028555; scaffold1024 WUBlastX LTR_Gypsy 990126 990341 55 + . . scaffold1024 GLEAN mRNA 990852 991427 0.999235 - . ID=CGI_10028555; scaffold1024 WUBlastX LTR_Gypsy 990852 991427 201 + . . scaffold1024 GLEAN mRNA 989654 989707 0.999235 - . ID=CGI_10028555; scaffold1024 WUBlastX LTR_Gypsy 989654 989707 20 + . . scaffold1024 GLEAN mRNA 990326 990838 0.999235 - . ID=CGI_10028555; scaffold1024 WUBlastX LTR_Gypsy 990326 990838 252 + . . scaffold1024 GLEAN mRNA 1032558 1032642 0.999572 + . ID=CGI_10028556; scaffold1024 TRF Tandem_Repeat 1032558 1032642 125 + . . scaffold1024 GLEAN mRNA 1032687 1032720 0.999572 + . ID=CGI_10028556; scaffold1024 TRF Tandem_Repeat 1032687 1032720 68 + . . scaffold1024 GLEAN mRNA 1032840 1032900 0.999572 + . ID=CGI_10028556; scaffold1024 TRF Tandem_Repeat 1032840 1032900 72 + . . scaffold1024 GLEAN mRNA 1038722 1038748 0.994137 - . ID=CGI_10028557; scaffold1024 TRF Tandem_Repeat 1038722 1038748 54 + . . scaffold1024 GLEAN mRNA 1067771 1068895 0.977799 - . ID=CGI_10028562; scaffold1024 WUBlastX DNA_PiggyBac 1067771 1068895 612 - . . scaffold1024 GLEAN mRNA 1067771 1069135 0.977799 - . ID=CGI_10028562; scaffold1024 WUBlastX DNA_PiggyBac 1067771 1069135 363 - . . scaffold1024 GLEAN mRNA 1072075 1072109 0.9551 - . ID=CGI_10028563; scaffold1024 TRF Tandem_Repeat 1072075 1072109 70 + . . scaffold1024 GLEAN mRNA 1074859 1075104 0.9551 - . ID=CGI_10028563; scaffold1024 WUBlastX DNA_PiggyBac 1074859 1075104 82 - . . scaffold1024 GLEAN mRNA 1074662 1074892 0.9551 - . ID=CGI_10028563; scaffold1024 WUBlastX DNA_PiggyBac 1074662 1074892 133 - . . scaffold1024 GLEAN mRNA 1076105 1076257 0.9551 - . ID=CGI_10028563; scaffold1024 WUBlastX DNA_PiggyBac 1076105 1076257 72 - . . scaffold1024 GLEAN mRNA 1076144 1076266 0.9551 - . ID=CGI_10028563; scaffold1024 WUBlastX DNA_PiggyBac 1076144 1076266 109 - . . scaffold1024 GLEAN mRNA 1076265 1076507 0.9551 - . ID=CGI_10028563; scaffold1024 WUBlastX DNA_PiggyBac 1076265 1076507 90 - . . scaffold1024 GLEAN mRNA 1074626 1074850 0.9551 - . ID=CGI_10028563; scaffold1024 WUBlastX DNA_PiggyBac 1074626 1074850 66 - . . scaffold1024 GLEAN mRNA 1075420 1075530 0.9551 - . ID=CGI_10028563; scaffold1024 WUBlastX DNA_PiggyBac 1075420 1075530 32 - . . scaffold1024 GLEAN mRNA 1076280 1076549 0.9551 - . ID=CGI_10028563; scaffold1024 WUBlastX DNA_PiggyBac 1076280 1076549 37 - . . scaffold1024 GLEAN mRNA 1073333 1073542 0.9551 - . ID=CGI_10028563; scaffold1024 WUBlastX DNA_PiggyBac 1073333 1073542 80 - . . scaffold1024 GLEAN mRNA 1080266 1080541 0.826098 - . ID=CGI_10028565; scaffold1024 WUBlastX DNA_PiggyBac 1080266 1080541 90 - . . scaffold1024 GLEAN mRNA 1080104 1080166 0.826098 - . ID=CGI_10028565; scaffold1024 WUBlastX DNA_TcMar-Tc1 1080104 1080166 41 - . . scaffold1024 GLEAN mRNA 1080212 1080499 0.826098 - . ID=CGI_10028565; scaffold1024 WUBlastX DNA_PiggyBac 1080212 1080499 97 - . . scaffold1024 GLEAN mRNA 1079920 1080114 0.826098 - . ID=CGI_10028565; scaffold1024 WUBlastX DNA_TcMar-Tc1 1079920 1080114 30 - . . scaffold1024 GLEAN mRNA 1080272 1080607 0.826098 - . ID=CGI_10028565; scaffold1024 WUBlastX DNA_PiggyBac 1080272 1080607 39 - . . scaffold1024 GLEAN mRNA 1080178 1080270 0.826098 - . ID=CGI_10028565; scaffold1024 WUBlastX DNA_PiggyBac 1080178 1080270 56 - . . scaffold1024 GLEAN mRNA 1079158 1079424 0.826098 - . ID=CGI_10028565; scaffold1024 WUBlastX DNA_PiggyBac 1079158 1079424 65 - . . scaffold1024 GLEAN mRNA 1079083 1079412 0.826098 - . ID=CGI_10028565; scaffold1024 WUBlastX DNA_PiggyBac 1079083 1079412 64 - . . scaffold1024 GLEAN mRNA 1081145 1081339 0.826098 - . ID=CGI_10028565; scaffold1024 WUBlastX LTR_Ngaro 1081145 1081339 42 - . . scaffold1024 GLEAN mRNA 1104822 1104887 0.470618 + . ID=CGI_10028566; scaffold1024 TRF Tandem_Repeat 1104822 1104887 123 + . . scaffold1024 GLEAN mRNA 1105059 1105093 0.470618 + . ID=CGI_10028566; scaffold1024 TRF Tandem_Repeat 1105059 1105093 52 + . . scaffold1024 GLEAN mRNA 1127045 1127081 0.704183 + . ID=CGI_10028569; scaffold1024 TRF Tandem_Repeat 1127045 1127081 58 + . . scaffold1024 GLEAN mRNA 1134668 1134862 0.704183 + . ID=CGI_10028569; scaffold1024 TRF Tandem_Repeat 1134668 1134862 291 + . . scaffold1024 GLEAN mRNA 1136771 1137225 0.704183 + . ID=CGI_10028569; scaffold1024 TRF Tandem_Repeat 1136771 1137225 531 + . . scaffold1024 GLEAN mRNA 1139331 1139426 0.704183 + . ID=CGI_10028569; scaffold1024 TRF Tandem_Repeat 1139331 1139426 63 + . . scaffold1024 GLEAN mRNA 1139367 1139523 0.704183 + . ID=CGI_10028569; scaffold1024 TRF Tandem_Repeat 1139367 1139523 68 + . . scaffold1024 GLEAN mRNA 1139414 1139497 0.704183 + . ID=CGI_10028569; scaffold1024 TRF Tandem_Repeat 1139414 1139497 50 + . . scaffold1024 GLEAN mRNA 1143251 1143320 0.704183 + . ID=CGI_10028569; scaffold1024 TRF Tandem_Repeat 1143251 1143320 119 + . . scaffold1024 GLEAN mRNA 1142064 1142189 0.704183 + . ID=CGI_10028569; scaffold1024 WUBlastX LINE_L1 1142064 1142189 21 + . . scaffold1024 GLEAN mRNA 1140780 1140971 0.704183 + . ID=CGI_10028569; scaffold1024 WUBlastX LINE_L1-Tx1 1140780 1140971 41 + . . scaffold1024 GLEAN mRNA 1151832 1152111 0.829164 + . ID=CGI_10028571; scaffold1024 TRF Tandem_Repeat 1151832 1152111 323 + . . scaffold1024 GLEAN mRNA 1152378 1153106 0.829164 + . ID=CGI_10028571; scaffold1024 TRF Tandem_Repeat 1152378 1153106 494 + . . scaffold1024 GLEAN mRNA 1160202 1160240 0.829164 + . ID=CGI_10028571; scaffold1024 TRF Tandem_Repeat 1160202 1160240 78 + . . scaffold1024 GLEAN mRNA 1160485 1160553 0.829164 + . ID=CGI_10028571; scaffold1024 TRF Tandem_Repeat 1160485 1160553 138 + . . scaffold1024 GLEAN mRNA 1301917 1302718 0.738324 - . ID=CGI_10028574; scaffold1024 TRF Tandem_Repeat 1301917 1302718 1197 + . . scaffold1024 GLEAN mRNA 1302730 1302764 0.738324 - . ID=CGI_10028574; scaffold1024 TRF Tandem_Repeat 1302730 1302764 52 + . . scaffold1024 GLEAN mRNA 1302723 1302765 0.738324 - . ID=CGI_10028574; scaffold1024 TRF Tandem_Repeat 1302723 1302765 59 + . . scaffold1024 GLEAN mRNA 1368718 1368866 1 - . ID=CGI_10028576; scaffold1024 TRF Tandem_Repeat 1368718 1368866 79 + . . scaffold1024 GLEAN mRNA 1369833 1370577 1 - . ID=CGI_10028576; scaffold1024 TRF Tandem_Repeat 1369833 1370577 935 + . . scaffold1024 GLEAN mRNA 1370715 1370752 1 - . ID=CGI_10028576; scaffold1024 TRF Tandem_Repeat 1370715 1370752 60 + . . scaffold1024 GLEAN mRNA 1554486 1554533 0.996603 - . ID=CGI_10028580; scaffold1024 TRF Tandem_Repeat 1554486 1554533 96 + . . scaffold1024 GLEAN mRNA 1558113 1558161 0.996603 - . ID=CGI_10028580; scaffold1024 TRF Tandem_Repeat 1558113 1558161 98 + . . scaffold1024 GLEAN mRNA 1562194 1562238 0.996603 - . ID=CGI_10028580; scaffold1024 TRF Tandem_Repeat 1562194 1562238 63 + . . scaffold1024 GLEAN mRNA 1577105 1577138 0.99957 - . ID=CGI_10028581; scaffold1024 TRF Tandem_Repeat 1577105 1577138 59 + . . scaffold1024 GLEAN mRNA 1620866 1621741 0.999894 - . ID=CGI_10028582; scaffold1024 WUBlastX LINE_RTE-X 1620866 1622044 509 - . . scaffold1024 GLEAN mRNA 1701971 1702258 0.440752 - . ID=CGI_10028584; scaffold1024 WUBlastX LTR_Ngaro 1701971 1702258 180 + . . scaffold1024 GLEAN mRNA 1700980 1701720 0.440752 - . ID=CGI_10028584; scaffold1024 WUBlastX LTR_Ngaro 1700980 1701720 199 + . . scaffold1024 GLEAN mRNA 1701250 1701867 0.440752 - . ID=CGI_10028584; scaffold1024 WUBlastX LTR_Ngaro 1701250 1701867 75 + . . scaffold1024 GLEAN mRNA 1706421 1706510 0.440752 - . ID=CGI_10028584; scaffold1024 TRF Tandem_Repeat 1706421 1706510 153 + . . scaffold1024 GLEAN mRNA 1719271 1719323 0.440752 - . ID=CGI_10028584; scaffold1024 TRF Tandem_Repeat 1719271 1719323 61 + . . scaffold1024 GLEAN mRNA 1719388 1719452 0.440752 - . ID=CGI_10028584; scaffold1024 TRF Tandem_Repeat 1719388 1719452 112 + . . scaffold1024 GLEAN mRNA 1724061 1724393 0.440752 - . ID=CGI_10028584; scaffold1024 WUBlastX DNA_IS4EU 1724061 1724393 116 + . . scaffold1024 GLEAN mRNA 1724061 1724477 0.440752 - . ID=CGI_10028584; scaffold1024 WUBlastX DNA_IS4EU 1724061 1724477 101 + . . scaffold1024 GLEAN mRNA 1758683 1758961 0.556405 - . ID=CGI_10028585; scaffold1024 WUBlastX DNA_IS4EU 1758683 1758961 162 + . . scaffold1024 GLEAN mRNA 1761773 1761991 0.556405 - . ID=CGI_10028585; scaffold1024 WUBlastX DNA_IS4EU 1761773 1761991 74 - . . scaffold1024 GLEAN mRNA 1761728 1761964 0.556405 - . ID=CGI_10028585; scaffold1024 WUBlastX DNA_Kolobok-IS4 1761728 1761964 60 - . . scaffold1024 GLEAN mRNA 1757044 1757136 0.556405 - . ID=CGI_10028585; scaffold1024 WUBlastX DNA_Kolobok-IS4 1757044 1757136 32 + . . scaffold1024 GLEAN mRNA 1757149 1757313 0.556405 - . ID=CGI_10028585; scaffold1024 WUBlastX DNA_Kolobok-IS4 1757149 1757313 22 + . . scaffold150 GLEAN mRNA 153193 153634 0.530696 + . ID=CGI_10028589; scaffold150 TRF Tandem_Repeat 153193 153634 649 + . . scaffold150 GLEAN mRNA 153945 154171 0.530696 + . ID=CGI_10028589; scaffold150 TRF Tandem_Repeat 153945 154171 310 + . . scaffold150 GLEAN mRNA 157773 157809 0.530696 + . ID=CGI_10028589; scaffold150 TRF Tandem_Repeat 157773 157809 74 + . . scaffold150 GLEAN mRNA 157867 157891 0.530696 + . ID=CGI_10028589; scaffold150 TRF Tandem_Repeat 157867 157891 50 + . . scaffold150 GLEAN mRNA 160477 160513 0.530696 + . ID=CGI_10028589; scaffold150 TRF Tandem_Repeat 160477 160513 74 + . . scaffold150 GLEAN mRNA 160571 160595 0.530696 + . ID=CGI_10028589; scaffold150 TRF Tandem_Repeat 160571 160595 50 + . . scaffold150 GLEAN mRNA 183508 183553 0.530696 + . ID=CGI_10028589; scaffold150 TRF Tandem_Repeat 183508 183553 76 + . . scaffold150 GLEAN mRNA 204603 205397 0.738569 - . ID=CGI_10028590; scaffold150 WUBlastX DNA_IS4EU 204603 205397 406 + . . scaffold150 GLEAN mRNA 225583 225642 0.593383 + . ID=CGI_10028591; scaffold150 TRF Tandem_Repeat 225583 225642 93 + . . scaffold150 GLEAN mRNA 225708 225774 0.593383 + . ID=CGI_10028591; scaffold150 TRF Tandem_Repeat 225708 225774 55 + . . scaffold150 GLEAN mRNA 225708 225754 0.593383 + . ID=CGI_10028591; scaffold150 TRF Tandem_Repeat 225708 225754 60 + . . scaffold150 GLEAN mRNA 224267 224578 0.593383 + . ID=CGI_10028591; scaffold150 WUBlastX DNA_hAT 224267 224578 59 + . . scaffold150 GLEAN mRNA 231163 231856 0.593383 + . ID=CGI_10028591; scaffold150 TRF Tandem_Repeat 231163 231856 1003 + . . scaffold150 GLEAN mRNA 232019 232091 0.593383 + . ID=CGI_10028591; scaffold150 TRF Tandem_Repeat 232019 232091 128 + . . scaffold150 GLEAN mRNA 230932 231111 0.593383 + . ID=CGI_10028591; scaffold150 WUBlastX LINE_RTE-X 230932 231111 103 + . . scaffold150 GLEAN mRNA 237995 238162 0.593383 + . ID=CGI_10028591; scaffold150 WUBlastX DNA_PiggyBac 237995 238162 50 + . . scaffold150 GLEAN mRNA 225583 225642 0.997933 - . ID=CGI_10028592; scaffold150 TRF Tandem_Repeat 225583 225642 93 + . . scaffold150 GLEAN mRNA 225708 225774 0.997933 - . ID=CGI_10028592; scaffold150 TRF Tandem_Repeat 225708 225774 55 + . . scaffold150 GLEAN mRNA 225708 225754 0.997933 - . ID=CGI_10028592; scaffold150 TRF Tandem_Repeat 225708 225754 60 + . . scaffold150 GLEAN mRNA 231163 231856 0.997933 - . ID=CGI_10028592; scaffold150 TRF Tandem_Repeat 231163 231856 1003 + . . scaffold150 GLEAN mRNA 232019 232091 0.997933 - . ID=CGI_10028592; scaffold150 TRF Tandem_Repeat 232019 232091 128 + . . scaffold150 GLEAN mRNA 230932 231111 0.997933 - . ID=CGI_10028592; scaffold150 WUBlastX LINE_RTE-X 230932 231111 103 + . . scaffold150 GLEAN mRNA 425604 425660 0.342812 - . ID=CGI_10028608; scaffold150 TRF Tandem_Repeat 425604 425660 51 + . . scaffold150 GLEAN mRNA 425604 425662 0.342812 - . ID=CGI_10028608; scaffold150 TRF Tandem_Repeat 425604 425662 55 + . . scaffold150 GLEAN mRNA 432619 432655 0.342812 - . ID=CGI_10028608; scaffold150 TRF Tandem_Repeat 432619 432655 65 + . . scaffold150 GLEAN mRNA 433169 433230 0.342812 - . ID=CGI_10028608; scaffold150 TRF Tandem_Repeat 433169 433230 60 + . . scaffold150 GLEAN mRNA 433168 433254 0.342812 - . ID=CGI_10028608; scaffold150 TRF Tandem_Repeat 433168 433254 77 + . . scaffold150 GLEAN mRNA 433250 433340 0.342812 - . ID=CGI_10028608; scaffold150 TRF Tandem_Repeat 433250 433340 82 + . . scaffold150 GLEAN mRNA 442047 442586 0.995484 + . ID=CGI_10028609; scaffold150 WUBlastX LTR_Pao 442047 442604 364 + . . scaffold150 GLEAN mRNA 440943 442571 0.995484 + . ID=CGI_10028609; scaffold150 WUBlastX LTR_Pao 440943 442571 290 + . . scaffold150 GLEAN mRNA 441864 442571 0.995484 + . ID=CGI_10028609; scaffold150 WUBlastX LTR_Pao 441864 442571 336 + . . scaffold150 GLEAN mRNA 441258 442574 0.995484 + . ID=CGI_10028609; scaffold150 WUBlastX LTR_Pao 441258 442574 320 + . . scaffold150 GLEAN mRNA 518826 518877 1 - . ID=CGI_10028611; scaffold150 TRF Tandem_Repeat 518826 518877 104 + . . scaffold150 GLEAN mRNA 532134 532664 0.618008 + . ID=CGI_10028613; scaffold150 WUBlastX LINE_L1 532134 532664 68 + . . scaffold150 GLEAN mRNA 532212 532706 0.618008 + . ID=CGI_10028613; scaffold150 WUBlastX LINE_L1 532212 532853 41 + . . scaffold150 GLEAN mRNA 532038 532664 0.618008 + . ID=CGI_10028613; scaffold150 WUBlastX LINE_L1 532038 532664 29 + . . scaffold150 GLEAN mRNA 602901 603270 0.472758 + . ID=CGI_10028616; scaffold150 TRF Tandem_Repeat 602901 603270 486 + . . scaffold150 GLEAN mRNA 610580 611607 0.472758 + . ID=CGI_10028616; scaffold150 TRF Tandem_Repeat 610580 611607 408 + . . scaffold150 GLEAN mRNA 610580 611607 0.472758 + . ID=CGI_10028616; scaffold150 TRF Tandem_Repeat 610580 611607 452 + . . scaffold150 GLEAN mRNA 611828 612041 0.472758 + . ID=CGI_10028616; scaffold150 TRF Tandem_Repeat 611828 612041 261 + . . scaffold150 GLEAN mRNA 623741 624399 0.472758 + . ID=CGI_10028616; scaffold150 TRF Tandem_Repeat 623741 624399 933 + . . scaffold150 GLEAN mRNA 626492 626529 0.472758 + . ID=CGI_10028616; scaffold150 TRF Tandem_Repeat 626492 626529 58 + . . scaffold150 GLEAN mRNA 692034 692064 0.999675 - . ID=CGI_10028621; scaffold150 TRF Tandem_Repeat 692034 692064 62 + . . scaffold150 GLEAN mRNA 739568 739678 0.990752 + . ID=CGI_10028623; scaffold150 TRF Tandem_Repeat 739568 739678 54 + . . scaffold150 GLEAN mRNA 739575 739673 0.990752 + . ID=CGI_10028623; scaffold150 TRF Tandem_Repeat 739575 739673 78 + . . scaffold150 GLEAN mRNA 748110 748249 0.990752 + . ID=CGI_10028623; scaffold150 TRF Tandem_Repeat 748110 748249 271 + . . scaffold150 GLEAN mRNA 754504 754827 0.990752 + . ID=CGI_10028623; scaffold150 WUBlastX RC_Helitron 754504 754827 50 + . . scaffold150 GLEAN mRNA 760619 761702 0.984163 + . ID=CGI_10028624; scaffold150 TRF Tandem_Repeat 760619 761702 1482 + . . scaffold150 GLEAN mRNA 762931 762976 0.984163 + . ID=CGI_10028624; scaffold150 TRF Tandem_Repeat 762931 762976 57 + . . scaffold150 GLEAN mRNA 762934 762975 0.984163 + . ID=CGI_10028624; scaffold150 TRF Tandem_Repeat 762934 762975 50 + . . scaffold150 GLEAN mRNA 767281 767328 0.984163 + . ID=CGI_10028624; scaffold150 TRF Tandem_Repeat 767281 767328 60 + . . scaffold150 GLEAN mRNA 767284 767328 0.984163 + . ID=CGI_10028624; scaffold150 TRF Tandem_Repeat 767284 767328 81 + . . scaffold150 GLEAN mRNA 765640 765993 0.984163 + . ID=CGI_10028624; scaffold150 WUBlastX DNA_Kolobok-Hyd 765640 765993 64 + . . scaffold150 GLEAN mRNA 760619 761702 0.999429 - . ID=CGI_10028625; scaffold150 TRF Tandem_Repeat 760619 761702 1482 + . . scaffold150 GLEAN mRNA 762931 762976 0.999429 - . ID=CGI_10028625; scaffold150 TRF Tandem_Repeat 762931 762976 57 + . . scaffold150 GLEAN mRNA 762934 762975 0.999429 - . ID=CGI_10028625; scaffold150 TRF Tandem_Repeat 762934 762975 50 + . . scaffold150 GLEAN mRNA 767281 767328 0.999429 - . ID=CGI_10028625; scaffold150 TRF Tandem_Repeat 767281 767328 60 + . . scaffold150 GLEAN mRNA 767284 767328 0.999429 - . ID=CGI_10028625; scaffold150 TRF Tandem_Repeat 767284 767328 81 + . . scaffold150 GLEAN mRNA 765640 765993 0.999429 - . ID=CGI_10028625; scaffold150 WUBlastX DNA_Kolobok-Hyd 765640 765993 64 + . . scaffold150 GLEAN mRNA 843272 843306 1 - . ID=CGI_10028627; scaffold150 TRF Tandem_Repeat 843272 843306 61 + . . scaffold150 GLEAN mRNA 856688 856727 0.470574 + . ID=CGI_10028629; scaffold150 TRF Tandem_Repeat 856688 856727 73 + . . scaffold150 GLEAN mRNA 907605 907641 1 + . ID=CGI_10028630; scaffold150 TRF Tandem_Repeat 907605 907641 65 + . . scaffold150 GLEAN mRNA 907605 907644 1 + . ID=CGI_10028630; scaffold150 TRF Tandem_Repeat 907605 907644 53 + . . scaffold150 GLEAN mRNA 911668 911712 1 + . ID=CGI_10028630; scaffold150 TRF Tandem_Repeat 911668 911712 63 + . . scaffold150 GLEAN mRNA 1055934 1056251 1 + . ID=CGI_10028647; scaffold150 TRF Tandem_Repeat 1055934 1056251 609 + . . scaffold150 GLEAN mRNA 1116238 1116572 0.999928 - . ID=CGI_10028652; scaffold150 TRF Tandem_Repeat 1116238 1116572 233 + . . scaffold150 GLEAN mRNA 1148388 1148466 0.811719 + . ID=CGI_10028654; scaffold150 TRF Tandem_Repeat 1148388 1148466 74 + . . scaffold150 GLEAN mRNA 1150871 1150908 0.811719 + . ID=CGI_10028654; scaffold150 TRF Tandem_Repeat 1150871 1150908 67 + . . scaffold150 GLEAN mRNA 1152061 1152259 0.811719 + . ID=CGI_10028654; scaffold150 TRF Tandem_Repeat 1152061 1152259 346 + . . scaffold150 GLEAN mRNA 1155212 1155610 0.811719 + . ID=CGI_10028654; scaffold150 TRF Tandem_Repeat 1155212 1155610 690 + . . scaffold150 GLEAN mRNA 1163059 1163105 0.811719 + . ID=CGI_10028654; scaffold150 TRF Tandem_Repeat 1163059 1163105 60 + . . scaffold150 GLEAN mRNA 1163278 1164824 0.811719 + . ID=CGI_10028654; scaffold150 TRF Tandem_Repeat 1163278 1164824 2150 + . . scaffold150 GLEAN mRNA 1146580 1147322 0.811719 + . ID=CGI_10028654; scaffold150 TRF Tandem_Repeat 1146580 1147322 1014 + . . scaffold150 GLEAN mRNA 1176090 1176146 0.999583 - . ID=CGI_10028656; scaffold150 TRF Tandem_Repeat 1176090 1176146 69 + . . scaffold150 GLEAN mRNA 1181291 1181589 0.733288 - . ID=CGI_10028657; scaffold150 TRF Tandem_Repeat 1181291 1181589 314 + . . scaffold150 GLEAN mRNA 1186550 1186597 0.733288 - . ID=CGI_10028657; scaffold150 TRF Tandem_Repeat 1186550 1186597 96 + . . scaffold150 GLEAN mRNA 1186597 1186637 0.733288 - . ID=CGI_10028657; scaffold150 TRF Tandem_Repeat 1186597 1186637 73 + . . scaffold150 GLEAN mRNA 1186830 1186856 0.733288 - . ID=CGI_10028657; scaffold150 TRF Tandem_Repeat 1186830 1186856 54 + . . scaffold150 GLEAN mRNA 1196878 1197065 0.986568 + . ID=CGI_10028658; scaffold150 TRF Tandem_Repeat 1196878 1197065 159 + . . scaffold150 GLEAN mRNA 1199242 1200296 0.999997 - . ID=CGI_10028659; scaffold150 TRF Tandem_Repeat 1199242 1200296 778 + . . scaffold150 GLEAN mRNA 1199242 1200296 0.999997 - . ID=CGI_10028659; scaffold150 TRF Tandem_Repeat 1199242 1200296 959 + . . scaffold150 GLEAN mRNA 1199242 1200222 0.999997 - . ID=CGI_10028659; scaffold150 TRF Tandem_Repeat 1199242 1200222 1017 + . . scaffold150 GLEAN mRNA 1214103 1214527 1 - . ID=CGI_10028661; scaffold150 TRF Tandem_Repeat 1214103 1214527 207 + . . scaffold150 GLEAN mRNA 1214192 1214564 1 - . ID=CGI_10028661; scaffold150 TRF Tandem_Repeat 1214192 1214564 568 + . . scaffold150 GLEAN mRNA 1214192 1214564 1 - . ID=CGI_10028661; scaffold150 TRF Tandem_Repeat 1214192 1214564 453 + . . scaffold150 GLEAN mRNA 1222443 1223386 1 - . ID=CGI_10028661; scaffold150 TRF Tandem_Repeat 1222443 1223386 1006 + . . scaffold150 GLEAN mRNA 1222485 1223386 1 - . ID=CGI_10028661; scaffold150 TRF Tandem_Repeat 1222485 1223386 1257 + . . scaffold150 GLEAN mRNA 1215030 1215419 1 - . ID=CGI_10028661; scaffold150 WUBlastX DNA_Kolobok-Hyd 1215030 1215419 30 + . . scaffold150 GLEAN mRNA 1216149 1216373 1 - . ID=CGI_10028661; scaffold150 WUBlastX DNA_Kolobok-Hyd 1216149 1216373 25 + . . scaffold150 GLEAN mRNA 1214982 1215266 1 - . ID=CGI_10028661; scaffold150 WUBlastX DNA_Kolobok-Hyd 1214982 1215266 30 + . . scaffold150 GLEAN mRNA 1215922 1215996 1 - . ID=CGI_10028661; scaffold150 WUBlastX DNA_Kolobok-Hyd 1215922 1215996 42 + . . scaffold150 GLEAN mRNA 1214103 1214527 0.630659 + . ID=CGI_10028662; scaffold150 TRF Tandem_Repeat 1214103 1214527 207 + . . scaffold150 GLEAN mRNA 1214192 1214564 0.630659 + . ID=CGI_10028662; scaffold150 TRF Tandem_Repeat 1214192 1214564 568 + . . scaffold150 GLEAN mRNA 1214192 1214564 0.630659 + . ID=CGI_10028662; scaffold150 TRF Tandem_Repeat 1214192 1214564 453 + . . scaffold150 GLEAN mRNA 1215030 1215419 0.630659 + . ID=CGI_10028662; scaffold150 WUBlastX DNA_Kolobok-Hyd 1215030 1215419 30 + . . scaffold150 GLEAN mRNA 1216149 1216373 0.630659 + . ID=CGI_10028662; scaffold150 WUBlastX DNA_Kolobok-Hyd 1216149 1216373 25 + . . scaffold150 GLEAN mRNA 1214982 1215266 0.630659 + . ID=CGI_10028662; scaffold150 WUBlastX DNA_Kolobok-Hyd 1214982 1215266 30 + . . scaffold150 GLEAN mRNA 1215922 1215996 0.630659 + . ID=CGI_10028662; scaffold150 WUBlastX DNA_Kolobok-Hyd 1215922 1215996 42 + . . scaffold150 GLEAN mRNA 1230426 1230473 0.911813 - . ID=CGI_10028663; scaffold150 TRF Tandem_Repeat 1230426 1230473 55 + . . scaffold150 GLEAN mRNA 1304170 1304595 0.814164 - . ID=CGI_10028672; scaffold150 TRF Tandem_Repeat 1304170 1304595 342 + . . scaffold150 GLEAN mRNA 1304168 1304595 0.814164 - . ID=CGI_10028672; scaffold150 TRF Tandem_Repeat 1304168 1304595 423 + . . scaffold150 GLEAN mRNA 1305568 1306391 0.814164 - . ID=CGI_10028672; scaffold150 TRF Tandem_Repeat 1305568 1306391 1199 + . . scaffold150 GLEAN mRNA 1307475 1307545 0.814164 - . ID=CGI_10028672; scaffold150 TRF Tandem_Repeat 1307475 1307545 142 + . . scaffold150 GLEAN mRNA 1320726 1320763 1 - . ID=CGI_10028674; scaffold150 TRF Tandem_Repeat 1320726 1320763 67 + . . scaffold150 GLEAN mRNA 1320893 1321008 1 - . ID=CGI_10028674; scaffold150 TRF Tandem_Repeat 1320893 1321008 187 + . . scaffold150 GLEAN mRNA 1323592 1323644 1 - . ID=CGI_10028674; scaffold150 TRF Tandem_Repeat 1323592 1323644 97 + . . scaffold150 GLEAN mRNA 1329182 1329218 1 - . ID=CGI_10028674; scaffold150 TRF Tandem_Repeat 1329182 1329218 74 + . . scaffold150 GLEAN mRNA 1348701 1349542 1 + . ID=CGI_10028675; scaffold150 TRF Tandem_Repeat 1348701 1349542 1066 + . . scaffold150 GLEAN mRNA 1353824 1354636 0.998084 - . ID=CGI_10028676; scaffold150 WUBlastX LTR_DIRS 1353824 1354636 369 - . . scaffold150 GLEAN mRNA 1354612 1355247 0.998084 - . ID=CGI_10028676; scaffold150 WUBlastX LTR_DIRS 1354612 1355247 275 - . . scaffold150 GLEAN mRNA 1354630 1355463 0.998084 - . ID=CGI_10028676; scaffold150 WUBlastX LTR_DIRS 1354630 1355463 129 - . . scaffold150 GLEAN mRNA 1352745 1353680 0.998084 - . ID=CGI_10028676; scaffold150 WUBlastX LTR_DIRS 1352745 1353680 458 - . . scaffold150 GLEAN mRNA 1365310 1365453 0.499144 + . ID=CGI_10028677; scaffold150 TRF Tandem_Repeat 1365310 1365453 126 + . . scaffold150 GLEAN mRNA 1366517 1366576 0.499144 + . ID=CGI_10028677; scaffold150 TRF Tandem_Repeat 1366517 1366576 93 + . . scaffold150 GLEAN mRNA 1368098 1368160 0.499144 + . ID=CGI_10028677; scaffold150 TRF Tandem_Repeat 1368098 1368160 58 + . . scaffold150 GLEAN mRNA 1371921 1371976 0.499144 + . ID=CGI_10028677; scaffold150 TRF Tandem_Repeat 1371921 1371976 112 + . . scaffold150 GLEAN mRNA 1377910 1378197 0.499144 + . ID=CGI_10028677; scaffold150 TRF Tandem_Repeat 1377910 1378197 324 + . . scaffold150 GLEAN mRNA 1377910 1378197 0.499144 + . ID=CGI_10028677; scaffold150 TRF Tandem_Repeat 1377910 1378197 366 + . . scaffold150 GLEAN mRNA 1396588 1396710 0.394228 - . ID=CGI_10028679; scaffold150 TRF Tandem_Repeat 1396588 1396710 129 + . . scaffold150 GLEAN mRNA 1401868 1401961 0.394228 - . ID=CGI_10028679; scaffold150 TRF Tandem_Repeat 1401868 1401961 134 + . . scaffold150 GLEAN mRNA 1405476 1405519 0.394228 - . ID=CGI_10028679; scaffold150 TRF Tandem_Repeat 1405476 1405519 88 + . . scaffold150 GLEAN mRNA 1406108 1406144 0.394228 - . ID=CGI_10028679; scaffold150 TRF Tandem_Repeat 1406108 1406144 65 + . . scaffold150 GLEAN mRNA 1405476 1405519 1 + . ID=CGI_10028680; scaffold150 TRF Tandem_Repeat 1405476 1405519 88 + . . scaffold150 GLEAN mRNA 1406108 1406144 1 + . ID=CGI_10028680; scaffold150 TRF Tandem_Repeat 1406108 1406144 65 + . . scaffold150 GLEAN mRNA 1439277 1439319 0.729145 + . ID=CGI_10028683; scaffold150 TRF Tandem_Repeat 1439277 1439319 59 + . . scaffold150 GLEAN mRNA 1439489 1440366 0.729145 + . ID=CGI_10028683; scaffold150 TRF Tandem_Repeat 1439489 1440366 1307 + . . scaffold150 GLEAN mRNA 1441553 1441985 0.729145 + . ID=CGI_10028683; scaffold150 TRF Tandem_Repeat 1441553 1441985 577 + . . scaffold150 GLEAN mRNA 1450742 1450838 1 - . ID=CGI_10028684; scaffold150 TRF Tandem_Repeat 1450742 1450838 103 + . . scaffold150 GLEAN mRNA 1450766 1450841 1 - . ID=CGI_10028684; scaffold150 TRF Tandem_Repeat 1450766 1450841 79 + . . scaffold150 GLEAN mRNA 1581973 1582093 0.685515 + . ID=CGI_10028690; scaffold150 TRF Tandem_Repeat 1581973 1582093 224 + . . scaffold150 GLEAN mRNA 1582194 1582263 0.685515 + . ID=CGI_10028690; scaffold150 TRF Tandem_Repeat 1582194 1582263 140 + . . scaffold150 GLEAN mRNA 1585576 1585634 0.685515 + . ID=CGI_10028690; scaffold150 TRF Tandem_Repeat 1585576 1585634 118 + . . scaffold150 GLEAN mRNA 1587563 1587798 0.685515 + . ID=CGI_10028690; scaffold150 TRF Tandem_Repeat 1587563 1587798 357 + . . scaffold150 GLEAN mRNA 1587885 1588194 0.685515 + . ID=CGI_10028690; scaffold150 TRF Tandem_Repeat 1587885 1588194 230 + . . scaffold150 GLEAN mRNA 1580672 1580986 0.685515 + . ID=CGI_10028690; scaffold150 WUBlastX DNA_Kolobok 1580672 1580986 121 + . . scaffold150 GLEAN mRNA 1581593 1581652 0.685515 + . ID=CGI_10028690; scaffold150 WUBlastX DNA_Kolobok 1581593 1581652 34 + . . scaffold150 GLEAN mRNA 1580669 1581040 0.685515 + . ID=CGI_10028690; scaffold150 WUBlastX DNA_Kolobok 1580669 1581040 111 + . . scaffold150 GLEAN mRNA 1581581 1581649 0.685515 + . ID=CGI_10028690; scaffold150 WUBlastX DNA_Kolobok 1581581 1581649 25 + . . scaffold150 GLEAN mRNA 1581197 1581439 0.685515 + . ID=CGI_10028690; scaffold150 WUBlastX DNA_Kolobok 1581197 1581439 118 + . . scaffold150 GLEAN mRNA 1589604 1589657 0.685515 + . ID=CGI_10028690; scaffold150 TRF Tandem_Repeat 1589604 1589657 99 + . . scaffold150 GLEAN mRNA 1589734 1589771 0.685515 + . ID=CGI_10028690; scaffold150 TRF Tandem_Repeat 1589734 1589771 67 + . . scaffold150 GLEAN mRNA 1589769 1589803 0.685515 + . ID=CGI_10028690; scaffold150 TRF Tandem_Repeat 1589769 1589803 70 + . . scaffold150 GLEAN mRNA 1589842 1589922 0.685515 + . ID=CGI_10028690; scaffold150 TRF Tandem_Repeat 1589842 1589922 71 + . . scaffold150 GLEAN mRNA 1590576 1592947 0.685515 + . ID=CGI_10028690; scaffold150 TRF Tandem_Repeat 1590576 1592947 3358 + . . scaffold150 GLEAN mRNA 1594630 1594736 0.685515 + . ID=CGI_10028690; scaffold150 TRF Tandem_Repeat 1594630 1594736 171 + . . scaffold150 GLEAN mRNA 1595444 1595526 0.685515 + . ID=CGI_10028690; scaffold150 TRF Tandem_Repeat 1595444 1595526 109 + . . scaffold150 GLEAN mRNA 1595945 1595992 0.685515 + . ID=CGI_10028690; scaffold150 TRF Tandem_Repeat 1595945 1595992 60 + . . scaffold150 GLEAN mRNA 1597790 1598275 0.685515 + . ID=CGI_10028690; scaffold150 WUBlastX LTR_Gypsy 1597790 1598275 26 + . . scaffold150 GLEAN mRNA 1610649 1611221 0.550073 + . ID=CGI_10028691; scaffold150 WUBlastX LINE_CR1-L2 1610649 1611221 110 + . . scaffold150 GLEAN mRNA 1610649 1611575 0.550073 + . ID=CGI_10028691; scaffold150 WUBlastX LINE_CR1-L2 1610649 1611575 48 + . . scaffold150 GLEAN mRNA 1610570 1610653 0.550073 + . ID=CGI_10028691; scaffold150 WUBlastX LINE_CR1-L2 1610570 1610653 64 + . . scaffold150 GLEAN mRNA 1610589 1610957 0.550073 + . ID=CGI_10028691; scaffold150 WUBlastX LINE_CR1-L2 1610589 1610957 87 + . . scaffold150 GLEAN mRNA 1610519 1610620 0.550073 + . ID=CGI_10028691; scaffold150 WUBlastX LINE_L2 1610519 1610620 32 + . . scaffold150 GLEAN mRNA 1760005 1760328 0.80741 + . ID=CGI_10028702; scaffold150 WUBlastX DNA_IS4EU 1760005 1760328 84 - . . scaffold150 GLEAN mRNA 1792868 1792910 0.999141 - . ID=CGI_10028703; scaffold150 TRF Tandem_Repeat 1792868 1792910 86 + . . scaffold150 GLEAN mRNA 1822441 1822494 0.999676 - . ID=CGI_10028704; scaffold150 TRF Tandem_Repeat 1822441 1822494 99 + . . scaffold150 GLEAN mRNA 1823184 1823226 0.999676 - . ID=CGI_10028704; scaffold150 TRF Tandem_Repeat 1823184 1823226 86 + . . scaffold150 GLEAN mRNA 1831789 1831843 0.999999 - . ID=CGI_10028707; scaffold150 TRF Tandem_Repeat 1831789 1831843 56 + . . scaffold1009 GLEAN mRNA 93210 93599 0.637996 - . ID=CGI_10028717; scaffold1009 TRF Tandem_Repeat 93210 93599 396 + . . scaffold1009 GLEAN mRNA 93774 93848 0.637996 - . ID=CGI_10028717; scaffold1009 TRF Tandem_Repeat 93774 93848 150 + . . scaffold1009 GLEAN mRNA 99960 100011 0.637996 - . ID=CGI_10028717; scaffold1009 TRF Tandem_Repeat 99960 100011 97 + . . scaffold1009 GLEAN mRNA 108832 108873 0.999571 - . ID=CGI_10028718; scaffold1009 TRF Tandem_Repeat 108832 108873 84 + . . scaffold1009 GLEAN mRNA 112506 112555 0.999571 - . ID=CGI_10028718; scaffold1009 TRF Tandem_Repeat 112506 112555 66 + . . scaffold1009 GLEAN mRNA 116218 116253 0.999571 - . ID=CGI_10028718; scaffold1009 TRF Tandem_Repeat 116218 116253 72 + . . scaffold1009 GLEAN mRNA 117425 117465 0.999571 - . ID=CGI_10028718; scaffold1009 TRF Tandem_Repeat 117425 117465 73 + . . scaffold1009 GLEAN mRNA 128400 128459 0.999571 - . ID=CGI_10028718; scaffold1009 TRF Tandem_Repeat 128400 128459 120 + . . scaffold1009 GLEAN mRNA 146783 146965 0.373363 + . ID=CGI_10028719; scaffold1009 WUBlastX LTR_Ngaro 146783 146965 62 - . . scaffold1009 GLEAN mRNA 148675 149434 0.373363 + . ID=CGI_10028719; scaffold1009 TRF Tandem_Repeat 148675 149434 1288 + . . scaffold1009 GLEAN mRNA 147562 147879 0.373363 + . ID=CGI_10028719; scaffold1009 WUBlastX LTR_Ngaro 147562 147879 227 - . . scaffold1009 GLEAN mRNA 147878 148510 0.373363 + . ID=CGI_10028719; scaffold1009 WUBlastX LTR_Ngaro 147878 148510 182 - . . scaffold1009 GLEAN mRNA 147324 148268 0.373363 + . ID=CGI_10028719; scaffold1009 WUBlastX LTR_Ngaro 147324 148268 165 - . . scaffold1009 GLEAN mRNA 167534 168688 0.959931 - . ID=CGI_10028721; scaffold1009 WUBlastX LTR_Gypsy 167534 168688 145 - . . scaffold1009 GLEAN mRNA 167708 170077 0.959931 - . ID=CGI_10028721; scaffold1009 WUBlastX LTR_Copia 167708 170077 1469 - . . scaffold1009 GLEAN mRNA 165270 166955 0.959931 - . ID=CGI_10028721; scaffold1009 WUBlastX LTR_Copia 165270 166955 204 - . . scaffold1009 GLEAN mRNA 165216 166661 0.959931 - . ID=CGI_10028721; scaffold1009 WUBlastX LTR_Copia 165216 166661 870 - . . scaffold1009 GLEAN mRNA 169952 170104 0.959931 - . ID=CGI_10028721; scaffold1009 WUBlastX LTR_Lenti 169952 170104 23 - . . scaffold1009 GLEAN mRNA 255600 255638 0.99497 - . ID=CGI_10028723; scaffold1009 TRF Tandem_Repeat 255600 255638 69 + . . scaffold1009 GLEAN mRNA 256496 256564 0.99497 - . ID=CGI_10028723; scaffold1009 TRF Tandem_Repeat 256496 256564 138 + . . scaffold1009 GLEAN mRNA 251705 253387 0.99497 - . ID=CGI_10028723; scaffold1009 WUBlastX LTR_Pao 251705 253387 633 - . . scaffold1009 GLEAN mRNA 266585 267364 0.99497 - . ID=CGI_10028723; scaffold1009 TRF Tandem_Repeat 266585 267364 1065 + . . scaffold1009 GLEAN mRNA 267533 267572 0.99497 - . ID=CGI_10028723; scaffold1009 TRF Tandem_Repeat 267533 267572 53 + . . scaffold1009 GLEAN mRNA 279619 279688 0.999997 - . ID=CGI_10028724; scaffold1009 TRF Tandem_Repeat 279619 279688 133 + . . scaffold1009 GLEAN mRNA 282274 282386 0.999997 - . ID=CGI_10028724; scaffold1009 TRF Tandem_Repeat 282274 282386 67 + . . scaffold1009 GLEAN mRNA 282274 282386 0.999997 - . ID=CGI_10028724; scaffold1009 TRF Tandem_Repeat 282274 282386 106 + . . scaffold1009 GLEAN mRNA 282298 282387 0.999997 - . ID=CGI_10028724; scaffold1009 TRF Tandem_Repeat 282298 282387 85 + . . scaffold1009 GLEAN mRNA 401787 401844 0.999423 - . ID=CGI_10028731; scaffold1009 TRF Tandem_Repeat 401787 401844 116 + . . scaffold1009 GLEAN mRNA 423208 423471 0.992384 - . ID=CGI_10028732; scaffold1009 WUBlastX DNA_hAT-Tip100 423208 423471 36 + . . scaffold1009 GLEAN mRNA 423232 423387 0.992384 - . ID=CGI_10028732; scaffold1009 WUBlastX DNA_hAT-Tip100 423232 423387 104 + . . scaffold1009 GLEAN mRNA 423519 423953 0.992384 - . ID=CGI_10028732; scaffold1009 WUBlastX DNA_hAT-Tip100 423519 423953 261 + . . scaffold1009 GLEAN mRNA 423956 424078 0.992384 - . ID=CGI_10028732; scaffold1009 WUBlastX DNA_hAT-Tip100 423956 424078 38 + . . scaffold1009 GLEAN mRNA 424075 424593 0.992384 - . ID=CGI_10028732; scaffold1009 WUBlastX DNA_hAT-Tip100 424075 424593 193 + . . scaffold1009 GLEAN mRNA 423417 424004 0.992384 - . ID=CGI_10028732; scaffold1009 WUBlastX DNA_hAT-Tip100 423417 424004 145 + . . scaffold1009 GLEAN mRNA 431527 431706 1 + . ID=CGI_10028733; scaffold1009 WUBlastX DNA_Kolobok-IS4 431527 431706 34 + . . scaffold1009 GLEAN mRNA 431572 431709 1 + . ID=CGI_10028733; scaffold1009 WUBlastX DNA_IS4EU 431572 431709 45 + . . scaffold1009 GLEAN mRNA 430368 430664 1 + . ID=CGI_10028733; scaffold1009 WUBlastX DNA_IS4EU 430368 430664 83 + . . scaffold1009 GLEAN mRNA 431830 431934 1 + . ID=CGI_10028733; scaffold1009 WUBlastX DNA_IS4EU 431830 432531 414 + . . scaffold1009 GLEAN mRNA 441790 441840 0.642636 - . ID=CGI_10028735; scaffold1009 TRF Tandem_Repeat 441790 441840 50 + . . scaffold1009 GLEAN mRNA 469749 469868 0.999676 - . ID=CGI_10028737; scaffold1009 TRF Tandem_Repeat 469749 469868 204 + . . scaffold1009 GLEAN mRNA 476387 476731 0.999676 - . ID=CGI_10028737; scaffold1009 TRF Tandem_Repeat 476387 476731 548 + . . scaffold1009 GLEAN mRNA 491464 491518 0.999001 - . ID=CGI_10028738; scaffold1009 TRF Tandem_Repeat 491464 491518 110 + . . scaffold1009 GLEAN mRNA 491703 491867 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 491703 491867 102 + . . scaffold1009 GLEAN mRNA 492737 492901 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 492737 492901 66 + . . scaffold1009 GLEAN mRNA 493213 493449 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 493213 493449 84 + . . scaffold1009 GLEAN mRNA 494087 494239 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 494087 494239 89 + . . scaffold1009 GLEAN mRNA 494582 494689 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 494582 494689 47 + . . scaffold1009 GLEAN mRNA 497569 497703 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 497569 497703 35 + . . scaffold1009 GLEAN mRNA 495384 495569 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 495384 495569 53 + . . scaffold1009 GLEAN mRNA 497005 497202 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 497005 497202 60 + . . scaffold1009 GLEAN mRNA 494985 495083 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 494985 495083 32 + . . scaffold1009 GLEAN mRNA 495770 496030 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_hAT 495770 496030 135 + . . scaffold1009 GLEAN mRNA 522418 523211 0.739636 - . ID=CGI_10028739; scaffold1009 TRF Tandem_Repeat 522418 523211 1218 + . . scaffold1009 GLEAN mRNA 523236 523285 0.739636 - . ID=CGI_10028739; scaffold1009 TRF Tandem_Repeat 523236 523285 55 + . . scaffold1009 GLEAN mRNA 523243 523294 0.739636 - . ID=CGI_10028739; scaffold1009 TRF Tandem_Repeat 523243 523294 59 + . . scaffold1009 GLEAN mRNA 615206 615573 0.999676 + . ID=CGI_10028742; scaffold1009 TRF Tandem_Repeat 615206 615573 556 + . . scaffold1009 GLEAN mRNA 622220 622251 0.999676 + . ID=CGI_10028742; scaffold1009 TRF Tandem_Repeat 622220 622251 64 + . . scaffold1009 GLEAN mRNA 630372 630701 0.999676 + . ID=CGI_10028742; scaffold1009 TRF Tandem_Repeat 630372 630701 213 + . . scaffold1009 GLEAN mRNA 630378 630701 0.999676 + . ID=CGI_10028742; scaffold1009 TRF Tandem_Repeat 630378 630701 219 + . . scaffold1009 GLEAN mRNA 622220 622251 1 - . ID=CGI_10028743; scaffold1009 TRF Tandem_Repeat 622220 622251 64 + . . scaffold1009 GLEAN mRNA 642206 642377 0.999925 - . ID=CGI_10028744; scaffold1009 TRF Tandem_Repeat 642206 642377 119 + . . scaffold1009 GLEAN mRNA 642428 642719 0.999925 - . ID=CGI_10028744; scaffold1009 TRF Tandem_Repeat 642428 642719 331 + . . scaffold1009 GLEAN mRNA 652291 652960 0.999925 - . ID=CGI_10028744; scaffold1009 TRF Tandem_Repeat 652291 652960 828 + . . scaffold1009 GLEAN mRNA 673800 674537 0.999984 - . ID=CGI_10028748; scaffold1009 WUBlastX LINE_L1 673800 674537 31 - . . scaffold1009 GLEAN mRNA 684264 684341 0.999998 + . ID=CGI_10028750; scaffold1009 TRF Tandem_Repeat 684264 684341 133 + . . scaffold1009 GLEAN mRNA 689191 689564 0.999998 + . ID=CGI_10028750; scaffold1009 TRF Tandem_Repeat 689191 689564 324 + . . scaffold1009 GLEAN mRNA 689191 689564 0.999998 + . ID=CGI_10028750; scaffold1009 TRF Tandem_Repeat 689191 689564 418 + . . scaffold1009 GLEAN mRNA 690102 690822 0.999998 + . ID=CGI_10028750; scaffold1009 TRF Tandem_Repeat 690102 690822 682 + . . scaffold1009 GLEAN mRNA 690108 690822 0.999998 + . ID=CGI_10028750; scaffold1009 TRF Tandem_Repeat 690108 690822 444 + . . scaffold1009 GLEAN mRNA 700659 700697 0.999998 + . ID=CGI_10028750; scaffold1009 TRF Tandem_Repeat 700659 700697 78 + . . scaffold1009 GLEAN mRNA 710954 711176 0.999998 + . ID=CGI_10028750; scaffold1009 TRF Tandem_Repeat 710954 711176 403 + . . scaffold1009 GLEAN mRNA 684264 684341 0.937846 - . ID=CGI_10028751; scaffold1009 TRF Tandem_Repeat 684264 684341 133 + . . scaffold1009 GLEAN mRNA 714498 714543 1 + . ID=CGI_10028753; scaffold1009 TRF Tandem_Repeat 714498 714543 60 + . . scaffold1009 GLEAN mRNA 716328 716691 1 + . ID=CGI_10028753; scaffold1009 TRF Tandem_Repeat 716328 716691 457 + . . scaffold1009 GLEAN mRNA 749518 749884 1 - . ID=CGI_10028758; scaffold1009 TRF Tandem_Repeat 749518 749884 428 + . . scaffold1009 GLEAN mRNA 749518 749884 1 - . ID=CGI_10028758; scaffold1009 TRF Tandem_Repeat 749518 749884 513 + . . scaffold1009 GLEAN mRNA 758271 758319 1 - . ID=CGI_10028758; scaffold1009 TRF Tandem_Repeat 758271 758319 98 + . . scaffold1009 GLEAN mRNA 756697 756897 1 - . ID=CGI_10028758; scaffold1009 WUBlastX LINE_RTE-X 756697 756897 61 - . . scaffold1009 GLEAN mRNA 756739 756933 1 - . ID=CGI_10028758; scaffold1009 WUBlastX LINE_RTE-X 756739 756933 46 - . . scaffold1009 GLEAN mRNA 798339 798698 0.387799 - . ID=CGI_10028763; scaffold1009 TRF Tandem_Repeat 798339 798698 371 + . . scaffold1009 GLEAN mRNA 803136 803255 0.387799 - . ID=CGI_10028763; scaffold1009 WUBlastX LINE_RTE-BovB 803136 803255 81 - . . scaffold1009 GLEAN mRNA 803038 803106 0.387799 - . ID=CGI_10028763; scaffold1009 WUBlastX LINE_RTE-BovB 803038 803106 24 - . . scaffold1009 GLEAN mRNA 802731 802928 0.387799 - . ID=CGI_10028763; scaffold1009 WUBlastX LINE_RTE-BovB 802731 802928 93 - . . scaffold1009 GLEAN mRNA 803136 803255 0.994697 + . ID=CGI_10028764; scaffold1009 WUBlastX LINE_RTE-BovB 803136 803255 81 - . . scaffold1009 GLEAN mRNA 803038 803106 0.994697 + . ID=CGI_10028764; scaffold1009 WUBlastX LINE_RTE-BovB 803038 803106 24 - . . scaffold1009 GLEAN mRNA 802731 802928 0.994697 + . ID=CGI_10028764; scaffold1009 WUBlastX LINE_RTE-BovB 802731 802928 93 - . . scaffold1009 GLEAN mRNA 906752 906795 0.549248 + . ID=CGI_10028769; scaffold1009 TRF Tandem_Repeat 906752 906795 88 + . . scaffold1009 GLEAN mRNA 908768 908822 0.549248 + . ID=CGI_10028769; scaffold1009 TRF Tandem_Repeat 908768 908822 110 + . . scaffold1009 GLEAN mRNA 911148 911266 0.549248 + . ID=CGI_10028769; scaffold1009 TRF Tandem_Repeat 911148 911266 150 + . . scaffold1009 GLEAN mRNA 912994 913111 0.549248 + . ID=CGI_10028769; scaffold1009 TRF Tandem_Repeat 912994 913111 130 + . . scaffold1009 GLEAN mRNA 916740 917089 0.549248 + . ID=CGI_10028769; scaffold1009 TRF Tandem_Repeat 916740 917089 399 + . . scaffold1009 GLEAN mRNA 917758 917814 0.549248 + . ID=CGI_10028769; scaffold1009 TRF Tandem_Repeat 917758 917814 98 + . . scaffold1009 GLEAN mRNA 919264 920427 0.549248 + . ID=CGI_10028769; scaffold1009 TRF Tandem_Repeat 919264 920427 1409 + . . scaffold1009 GLEAN mRNA 967429 967474 1 + . ID=CGI_10028771; scaffold1009 TRF Tandem_Repeat 967429 967474 92 + . . scaffold1009 GLEAN mRNA 967863 968230 1 + . ID=CGI_10028771; scaffold1009 TRF Tandem_Repeat 967863 968230 255 + . . scaffold1009 GLEAN mRNA 970410 972401 1 + . ID=CGI_10028771; scaffold1009 TRF Tandem_Repeat 970410 972401 1872 + . . scaffold1009 GLEAN mRNA 970412 971993 1 + . ID=CGI_10028771; scaffold1009 TRF Tandem_Repeat 970412 971993 1224 + . . scaffold1009 GLEAN mRNA 973235 973277 1 + . ID=CGI_10028771; scaffold1009 TRF Tandem_Repeat 973235 973277 86 + . . scaffold1009 GLEAN mRNA 979765 979897 0.923138 - . ID=CGI_10028772; scaffold1009 TRF Tandem_Repeat 979765 979897 97 + . . scaffold1009 GLEAN mRNA 1014367 1015204 1 + . ID=CGI_10028775; scaffold1009 TRF Tandem_Repeat 1014367 1015204 487 + . . scaffold1009 GLEAN mRNA 1014360 1015232 1 + . ID=CGI_10028775; scaffold1009 TRF Tandem_Repeat 1014360 1015232 604 + . . scaffold1009 GLEAN mRNA 1014749 1014819 1 + . ID=CGI_10028775; scaffold1009 TRF Tandem_Repeat 1014749 1014819 52 + . . scaffold1009 GLEAN mRNA 1014367 1015204 0.964249 - . ID=CGI_10028776; scaffold1009 TRF Tandem_Repeat 1014367 1015204 487 + . . scaffold1009 GLEAN mRNA 1014360 1015232 0.964249 - . ID=CGI_10028776; scaffold1009 TRF Tandem_Repeat 1014360 1015232 604 + . . scaffold1009 GLEAN mRNA 1014749 1014819 0.964249 - . ID=CGI_10028776; scaffold1009 TRF Tandem_Repeat 1014749 1014819 52 + . . scaffold1009 GLEAN mRNA 1034388 1034452 0.83377 + . ID=CGI_10028777; scaffold1009 TRF Tandem_Repeat 1034388 1034452 130 + . . scaffold1009 GLEAN mRNA 1039630 1039720 0.83377 + . ID=CGI_10028777; scaffold1009 TRF Tandem_Repeat 1039630 1039720 146 + . . scaffold1009 GLEAN mRNA 1040250 1040353 0.83377 + . ID=CGI_10028777; scaffold1009 TRF Tandem_Repeat 1040250 1040353 120 + . . scaffold1009 GLEAN mRNA 1041209 1041407 0.83377 + . ID=CGI_10028777; scaffold1009 TRF Tandem_Repeat 1041209 1041407 86 + . . scaffold1009 GLEAN mRNA 1056941 1056976 0.999064 - . ID=CGI_10028778; scaffold1009 TRF Tandem_Repeat 1056941 1056976 72 + . . scaffold1009 GLEAN mRNA 1071829 1072313 0.544784 - . ID=CGI_10028779; scaffold1009 TRF Tandem_Repeat 1071829 1072313 424 + . . scaffold1009 GLEAN mRNA 1074260 1074309 0.544784 - . ID=CGI_10028779; scaffold1009 TRF Tandem_Repeat 1074260 1074309 100 + . . scaffold1009 GLEAN mRNA 1076896 1077938 0.544784 - . ID=CGI_10028779; scaffold1009 TRF Tandem_Repeat 1076896 1077938 982 + . . scaffold1009 GLEAN mRNA 1076885 1077938 0.544784 - . ID=CGI_10028779; scaffold1009 TRF Tandem_Repeat 1076885 1077938 988 + . . scaffold1009 GLEAN mRNA 1085983 1086871 0.999884 - . ID=CGI_10028780; scaffold1009 TRF Tandem_Repeat 1085983 1086871 1141 + . . scaffold1009 GLEAN mRNA 1148292 1148816 0.98363 + . ID=CGI_10028785; scaffold1009 TRF Tandem_Repeat 1148292 1148816 658 + . . scaffold1009 GLEAN mRNA 1148292 1148816 0.999289 - . ID=CGI_10028786; scaffold1009 TRF Tandem_Repeat 1148292 1148816 658 + . . scaffold1009 GLEAN mRNA 1179808 1179872 0.998821 + . ID=CGI_10028787; scaffold1009 TRF Tandem_Repeat 1179808 1179872 121 + . . scaffold1009 GLEAN mRNA 1208490 1209292 0.350484 + . ID=CGI_10028788; scaffold1009 TRF Tandem_Repeat 1208490 1209292 635 + . . scaffold1009 GLEAN mRNA 1219322 1219367 0.350484 + . ID=CGI_10028788; scaffold1009 TRF Tandem_Repeat 1219322 1219367 76 + . . scaffold1009 GLEAN mRNA 1225840 1226142 0.350484 + . ID=CGI_10028788; scaffold1009 WUBlastX LINE_RTE-X 1225840 1226142 111 - . . scaffold1009 GLEAN mRNA 1225837 1226280 0.350484 + . ID=CGI_10028788; scaffold1009 WUBlastX LINE_RTE-X 1225837 1226280 93 - . . scaffold1009 GLEAN mRNA 1225840 1226364 0.350484 + . ID=CGI_10028788; scaffold1009 WUBlastX LINE_RTE-X 1225840 1226364 29 - . . scaffold1009 GLEAN mRNA 1212325 1213359 0.350484 + . ID=CGI_10028788; scaffold1009 WUBlastX LTR_Pao 1212325 1213359 106 - . . scaffold1009 GLEAN mRNA 1248369 1248432 0.613222 - . ID=CGI_10028790; scaffold1009 TRF Tandem_Repeat 1248369 1248432 82 + . . scaffold1009 GLEAN mRNA 1248374 1248435 0.613222 - . ID=CGI_10028790; scaffold1009 TRF Tandem_Repeat 1248374 1248435 79 + . . scaffold1009 GLEAN mRNA 1267554 1268387 0.528485 - . ID=CGI_10028792; scaffold1009 WUBlastX DNA_hAT-hATw 1267554 1268387 21 - . . scaffold1009 GLEAN mRNA 1404015 1404338 0.363333 + . ID=CGI_10028796; scaffold1009 WUBlastX LINE_RTE-BovB 1404015 1404338 121 - . . scaffold1009 GLEAN mRNA 1403603 1404013 0.363333 + . ID=CGI_10028796; scaffold1009 WUBlastX LINE_RTE-BovB 1403603 1404013 43 - . . scaffold1009 GLEAN mRNA 1403774 1403941 0.363333 + . ID=CGI_10028796; scaffold1009 WUBlastX LINE_RTE-RTE 1403774 1403941 49 - . . scaffold1009 GLEAN mRNA 1418055 1418081 0.999944 - . ID=CGI_10028797; scaffold1009 TRF Tandem_Repeat 1418055 1418081 54 + . . scaffold1009 GLEAN mRNA 1524365 1524423 0.542618 - . ID=CGI_10028806; scaffold1009 TRF Tandem_Repeat 1524365 1524423 118 + . . scaffold1009 GLEAN mRNA 1534525 1534573 0.542618 - . ID=CGI_10028806; scaffold1009 TRF Tandem_Repeat 1534525 1534573 98 + . . scaffold1009 GLEAN mRNA 1540216 1540255 1 - . ID=CGI_10028807; scaffold1009 TRF Tandem_Repeat 1540216 1540255 62 + . . scaffold1009 GLEAN mRNA 1549651 1549692 0.982585 + . ID=CGI_10028808; scaffold1009 TRF Tandem_Repeat 1549651 1549692 84 + . . scaffold1009 GLEAN mRNA 1553133 1553266 0.982585 + . ID=CGI_10028808; scaffold1009 TRF Tandem_Repeat 1553133 1553266 171 + . . scaffold1009 GLEAN mRNA 1553343 1553502 0.982585 + . ID=CGI_10028808; scaffold1009 TRF Tandem_Repeat 1553343 1553502 182 + . . scaffold1009 GLEAN mRNA 1553709 1553802 0.982585 + . ID=CGI_10028808; scaffold1009 TRF Tandem_Repeat 1553709 1553802 98 + . . scaffold1009 GLEAN mRNA 1575911 1575959 1 - . ID=CGI_10028810; scaffold1009 TRF Tandem_Repeat 1575911 1575959 98 + . . scaffold1009 GLEAN mRNA 1589132 1589162 0.999619 - . ID=CGI_10028811; scaffold1009 TRF Tandem_Repeat 1589132 1589162 62 + . . scaffold1009 GLEAN mRNA 1609733 1609999 0.658504 - . ID=CGI_10028812; scaffold1009 TRF Tandem_Repeat 1609733 1609999 154 + . . scaffold1009 GLEAN mRNA 1609731 1609998 0.658504 - . ID=CGI_10028812; scaffold1009 TRF Tandem_Repeat 1609731 1609998 279 + . . scaffold1009 GLEAN mRNA 1609733 1609999 0.99628 + . ID=CGI_10028813; scaffold1009 TRF Tandem_Repeat 1609733 1609999 154 + . . scaffold1009 GLEAN mRNA 1609731 1609998 0.99628 + . ID=CGI_10028813; scaffold1009 TRF Tandem_Repeat 1609731 1609998 279 + . . scaffold1009 GLEAN mRNA 1621718 1621794 0.930867 + . ID=CGI_10028814; scaffold1009 TRF Tandem_Repeat 1621718 1621794 100 + . . scaffold1009 GLEAN mRNA 1621721 1621794 0.930867 + . ID=CGI_10028814; scaffold1009 TRF Tandem_Repeat 1621721 1621794 103 + . . scaffold1009 GLEAN mRNA 1621721 1621794 0.930867 + . ID=CGI_10028814; scaffold1009 TRF Tandem_Repeat 1621721 1621794 112 + . . scaffold1009 GLEAN mRNA 1633345 1633389 0.930867 + . ID=CGI_10028814; scaffold1009 TRF Tandem_Repeat 1633345 1633389 90 + . . scaffold1009 GLEAN mRNA 1666878 1667305 0.999706 + . ID=CGI_10028815; scaffold1009 TRF Tandem_Repeat 1666878 1667305 608 + . . scaffold1009 GLEAN mRNA 1667523 1667613 0.999706 + . ID=CGI_10028815; scaffold1009 TRF Tandem_Repeat 1667523 1667613 128 + . . scaffold1009 GLEAN mRNA 1761032 1761088 0.941658 - . ID=CGI_10028821; scaffold1009 TRF Tandem_Repeat 1761032 1761088 114 + . . scaffold22 GLEAN mRNA 13376 13437 0.999464 + . ID=CGI_10028822; scaffold22 TRF Tandem_Repeat 13376 13437 52 + . . scaffold22 GLEAN mRNA 13373 13436 0.999464 + . ID=CGI_10028822; scaffold22 TRF Tandem_Repeat 13373 13436 50 + . . scaffold22 GLEAN mRNA 13373 13442 0.999464 + . ID=CGI_10028822; scaffold22 TRF Tandem_Repeat 13373 13442 63 + . . scaffold22 GLEAN mRNA 13373 13442 0.999464 + . ID=CGI_10028822; scaffold22 TRF Tandem_Repeat 13373 13442 72 + . . scaffold22 GLEAN mRNA 33043 33067 0.999348 + . ID=CGI_10028824; scaffold22 TRF Tandem_Repeat 33043 33067 50 + . . scaffold22 GLEAN mRNA 71576 71625 0.801532 - . ID=CGI_10028825; scaffold22 TRF Tandem_Repeat 71576 71625 100 + . . scaffold22 GLEAN mRNA 73016 73069 0.801532 - . ID=CGI_10028825; scaffold22 TRF Tandem_Repeat 73016 73069 108 + . . scaffold22 GLEAN mRNA 90386 90583 0.856288 - . ID=CGI_10028828; scaffold22 WUBlastX DNA_TcMar-Marin 90386 90583 63 + . . scaffold22 GLEAN mRNA 90329 90520 0.856288 - . ID=CGI_10028828; scaffold22 WUBlastX DNA_TcMar-Marin 90329 90520 51 + . . scaffold22 GLEAN mRNA 90897 90992 0.856288 - . ID=CGI_10028828; scaffold22 WUBlastX DNA_TcMar-Marin 90897 90992 27 + . . scaffold22 GLEAN mRNA 90567 90803 0.856288 - . ID=CGI_10028828; scaffold22 WUBlastX DNA_TcMar-Marin 90567 90803 69 + . . scaffold22 GLEAN mRNA 90834 90995 0.856288 - . ID=CGI_10028828; scaffold22 WUBlastX DNA_TcMar-Marin 90834 90995 21 + . . scaffold22 GLEAN mRNA 105518 105692 0.856288 - . ID=CGI_10028828; scaffold22 TRF Tandem_Repeat 105518 105692 98 + . . scaffold22 GLEAN mRNA 106781 106990 0.856288 - . ID=CGI_10028828; scaffold22 TRF Tandem_Repeat 106781 106990 161 + . . scaffold22 GLEAN mRNA 106785 106993 0.856288 - . ID=CGI_10028828; scaffold22 TRF Tandem_Repeat 106785 106993 188 + . . scaffold22 GLEAN mRNA 136184 136429 1 - . ID=CGI_10028830; scaffold22 TRF Tandem_Repeat 136184 136429 156 + . . scaffold22 GLEAN mRNA 139884 140069 1 - . ID=CGI_10028830; scaffold22 TRF Tandem_Repeat 139884 140069 264 + . . scaffold22 GLEAN mRNA 140070 140395 1 - . ID=CGI_10028830; scaffold22 TRF Tandem_Repeat 140070 140395 575 + . . scaffold22 GLEAN mRNA 148300 148342 1 - . ID=CGI_10028830; scaffold22 TRF Tandem_Repeat 148300 148342 59 + . . scaffold22 GLEAN mRNA 151312 151357 1 - . ID=CGI_10028830; scaffold22 TRF Tandem_Repeat 151312 151357 67 + . . scaffold22 GLEAN mRNA 163425 163501 0.71876 + . ID=CGI_10028831; scaffold22 TRF Tandem_Repeat 163425 163501 88 + . . scaffold22 GLEAN mRNA 163424 163497 0.71876 + . ID=CGI_10028831; scaffold22 TRF Tandem_Repeat 163424 163497 93 + . . scaffold22 GLEAN mRNA 163424 163498 0.71876 + . ID=CGI_10028831; scaffold22 TRF Tandem_Repeat 163424 163498 70 + . . scaffold22 GLEAN mRNA 166105 166160 0.71876 + . ID=CGI_10028831; scaffold22 TRF Tandem_Repeat 166105 166160 51 + . . scaffold22 GLEAN mRNA 171801 171825 0.71876 + . ID=CGI_10028831; scaffold22 TRF Tandem_Repeat 171801 171825 50 + . . scaffold22 GLEAN mRNA 168185 169081 0.71876 + . ID=CGI_10028831; scaffold22 WUBlastX DNA_Merlin 168185 169081 353 + . . scaffold22 GLEAN mRNA 181548 182369 0.71876 + . ID=CGI_10028831; scaffold22 WUBlastX LTR_Pao 181548 182369 24 + . . scaffold22 GLEAN mRNA 187062 187349 0.987314 - . ID=CGI_10028832; scaffold22 TRF Tandem_Repeat 187062 187349 531 + . . scaffold22 GLEAN mRNA 187887 188005 0.987314 - . ID=CGI_10028832; scaffold22 TRF Tandem_Repeat 187887 188005 78 + . . scaffold22 GLEAN mRNA 190339 190419 0.987314 - . ID=CGI_10028832; scaffold22 TRF Tandem_Repeat 190339 190419 110 + . . scaffold22 GLEAN mRNA 190961 191101 0.987314 - . ID=CGI_10028832; scaffold22 TRF Tandem_Repeat 190961 191101 120 + . . scaffold22 GLEAN mRNA 192089 192201 0.987314 - . ID=CGI_10028832; scaffold22 TRF Tandem_Repeat 192089 192201 75 + . . scaffold22 GLEAN mRNA 192609 192729 0.987314 - . ID=CGI_10028832; scaffold22 TRF Tandem_Repeat 192609 192729 217 + . . scaffold22 GLEAN mRNA 198790 199574 1 + . ID=CGI_10028834; scaffold22 TRF Tandem_Repeat 198790 199574 1150 + . . scaffold22 GLEAN mRNA 198790 199574 1 + . ID=CGI_10028834; scaffold22 TRF Tandem_Repeat 198790 199574 1245 + . . scaffold22 GLEAN mRNA 199566 199604 1 + . ID=CGI_10028834; scaffold22 TRF Tandem_Repeat 199566 199604 78 + . . scaffold22 GLEAN mRNA 199594 199819 1 + . ID=CGI_10028834; scaffold22 TRF Tandem_Repeat 199594 199819 229 + . . scaffold22 GLEAN mRNA 208359 208402 0.999286 + . ID=CGI_10028835; scaffold22 TRF Tandem_Repeat 208359 208402 61 + . . scaffold22 GLEAN mRNA 208360 208398 0.999286 + . ID=CGI_10028835; scaffold22 TRF Tandem_Repeat 208360 208398 51 + . . scaffold22 GLEAN mRNA 208410 209066 0.999286 + . ID=CGI_10028835; scaffold22 TRF Tandem_Repeat 208410 209066 889 + . . scaffold22 GLEAN mRNA 211241 211505 0.999286 + . ID=CGI_10028835; scaffold22 TRF Tandem_Repeat 211241 211505 449 + . . scaffold22 GLEAN mRNA 211356 211482 0.999286 + . ID=CGI_10028835; scaffold22 TRF Tandem_Repeat 211356 211482 64 + . . scaffold22 GLEAN mRNA 211380 211504 0.999286 + . ID=CGI_10028835; scaffold22 TRF Tandem_Repeat 211380 211504 56 + . . scaffold22 GLEAN mRNA 213213 213710 0.999286 + . ID=CGI_10028835; scaffold22 TRF Tandem_Repeat 213213 213710 978 + . . scaffold22 GLEAN mRNA 216481 216507 0.999286 + . ID=CGI_10028835; scaffold22 TRF Tandem_Repeat 216481 216507 54 + . . scaffold22 GLEAN mRNA 219499 219737 0.999922 - . ID=CGI_10028836; scaffold22 TRF Tandem_Repeat 219499 219737 253 + . . scaffold22 GLEAN mRNA 255485 255593 1 - . ID=CGI_10028837; scaffold22 TRF Tandem_Repeat 255485 255593 175 + . . scaffold22 GLEAN mRNA 271306 272304 0.644868 - . ID=CGI_10028838; scaffold22 WUBlastX LINE_L1-Tx1 271306 272304 179 + . . scaffold22 GLEAN mRNA 302305 302351 0.999999 + . ID=CGI_10028840; scaffold22 TRF Tandem_Repeat 302305 302351 85 + . . scaffold22 GLEAN mRNA 329042 329075 1 - . ID=CGI_10028843; scaffold22 TRF Tandem_Repeat 329042 329075 68 + . . scaffold22 GLEAN mRNA 339494 339623 1 - . ID=CGI_10028844; scaffold22 TRF Tandem_Repeat 339494 339623 84 + . . scaffold22 GLEAN mRNA 339539 339685 1 - . ID=CGI_10028844; scaffold22 TRF Tandem_Repeat 339539 339685 64 + . . scaffold22 GLEAN mRNA 356233 356297 1 + . ID=CGI_10028845; scaffold22 TRF Tandem_Repeat 356233 356297 74 + . . scaffold22 GLEAN mRNA 370375 370464 0.982418 + . ID=CGI_10028847; scaffold22 TRF Tandem_Repeat 370375 370464 58 + . . scaffold22 GLEAN mRNA 387530 387705 0.826654 + . ID=CGI_10028849; scaffold22 TRF Tandem_Repeat 387530 387705 275 + . . scaffold22 GLEAN mRNA 402269 403064 0.826654 + . ID=CGI_10028849; scaffold22 TRF Tandem_Repeat 402269 403064 1001 + . . scaffold22 GLEAN mRNA 404127 404154 0.826654 + . ID=CGI_10028849; scaffold22 TRF Tandem_Repeat 404127 404154 56 + . . scaffold22 GLEAN mRNA 404458 404506 0.826654 + . ID=CGI_10028849; scaffold22 TRF Tandem_Repeat 404458 404506 98 + . . scaffold22 GLEAN mRNA 452548 452585 0.499919 - . ID=CGI_10028854; scaffold22 TRF Tandem_Repeat 452548 452585 76 + . . scaffold22 GLEAN mRNA 492351 492675 0.640664 + . ID=CGI_10028857; scaffold22 TRF Tandem_Repeat 492351 492675 321 + . . scaffold22 GLEAN mRNA 507168 507214 0.640664 + . ID=CGI_10028857; scaffold22 TRF Tandem_Repeat 507168 507214 76 + . . scaffold22 GLEAN mRNA 507375 507399 0.640664 + . ID=CGI_10028857; scaffold22 TRF Tandem_Repeat 507375 507399 50 + . . scaffold22 GLEAN mRNA 657452 657482 0.981305 - . ID=CGI_10028868; scaffold22 TRF Tandem_Repeat 657452 657482 62 + . . scaffold22 GLEAN mRNA 727908 727944 1 - . ID=CGI_10028871; scaffold22 TRF Tandem_Repeat 727908 727944 56 + . . scaffold22 GLEAN mRNA 771267 771306 0.978569 + . ID=CGI_10028874; scaffold22 TRF Tandem_Repeat 771267 771306 80 + . . scaffold22 GLEAN mRNA 849127 849175 1 - . ID=CGI_10028879; scaffold22 TRF Tandem_Repeat 849127 849175 98 + . . scaffold22 GLEAN mRNA 860244 860282 0.996367 + . ID=CGI_10028880; scaffold22 TRF Tandem_Repeat 860244 860282 51 + . . scaffold22 GLEAN mRNA 861240 861279 0.996367 + . ID=CGI_10028880; scaffold22 TRF Tandem_Repeat 861240 861279 53 + . . scaffold22 GLEAN mRNA 864849 865895 0.996367 + . ID=CGI_10028880; scaffold22 TRF Tandem_Repeat 864849 865895 1001 + . . scaffold22 GLEAN mRNA 866413 867210 0.996367 + . ID=CGI_10028880; scaffold22 TRF Tandem_Repeat 866413 867210 1109 + . . scaffold22 GLEAN mRNA 866413 867210 0.996367 + . ID=CGI_10028880; scaffold22 TRF Tandem_Repeat 866413 867210 1069 + . . scaffold22 GLEAN mRNA 871484 871526 0.996367 + . ID=CGI_10028880; scaffold22 TRF Tandem_Repeat 871484 871526 59 + . . scaffold22 GLEAN mRNA 882347 883090 0.996367 + . ID=CGI_10028880; scaffold22 WUBlastX LINE_RTE-X 882347 883090 183 - . . scaffold22 GLEAN mRNA 882221 883114 0.996367 + . ID=CGI_10028880; scaffold22 WUBlastX LINE_RTE-X 882221 883114 106 - . . scaffold22 GLEAN mRNA 897800 897837 1 - . ID=CGI_10028882; scaffold22 TRF Tandem_Repeat 897800 897837 60 + . . scaffold22 GLEAN mRNA 905361 906230 1 - . ID=CGI_10028882; scaffold22 TRF Tandem_Repeat 905361 906230 1210 + . . scaffold22 GLEAN mRNA 907182 907328 1 - . ID=CGI_10028882; scaffold22 TRF Tandem_Repeat 907182 907328 73 + . . scaffold22 GLEAN mRNA 907244 907373 1 - . ID=CGI_10028882; scaffold22 TRF Tandem_Repeat 907244 907373 93 + . . scaffold22 GLEAN mRNA 911763 912063 1 - . ID=CGI_10028882; scaffold22 TRF Tandem_Repeat 911763 912063 401 + . . scaffold22 GLEAN mRNA 905361 906230 0.824202 + . ID=CGI_10028883; scaffold22 TRF Tandem_Repeat 905361 906230 1210 + . . scaffold22 GLEAN mRNA 907182 907328 0.824202 + . ID=CGI_10028883; scaffold22 TRF Tandem_Repeat 907182 907328 73 + . . scaffold22 GLEAN mRNA 907244 907373 0.824202 + . ID=CGI_10028883; scaffold22 TRF Tandem_Repeat 907244 907373 93 + . . scaffold22 GLEAN mRNA 911763 912063 0.824202 + . ID=CGI_10028883; scaffold22 TRF Tandem_Repeat 911763 912063 401 + . . scaffold22 GLEAN mRNA 916446 916836 0.824202 + . ID=CGI_10028883; scaffold22 TRF Tandem_Repeat 916446 916836 522 + . . scaffold22 GLEAN mRNA 916444 916829 0.824202 + . ID=CGI_10028883; scaffold22 TRF Tandem_Repeat 916444 916829 582 + . . scaffold22 GLEAN mRNA 931880 933208 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 931880 933208 1266 - . . scaffold22 GLEAN mRNA 933494 933874 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 933494 933874 152 - . . scaffold22 GLEAN mRNA 930589 931887 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 930589 931887 1104 - . . scaffold22 GLEAN mRNA 933213 933512 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 933213 933512 292 - . . scaffold22 GLEAN mRNA 935126 935317 0.999814 - . ID=CGI_10028884; scaffold22 TRF Tandem_Repeat 935126 935317 79 + . . scaffold22 GLEAN mRNA 935125 935318 0.999814 - . ID=CGI_10028884; scaffold22 TRF Tandem_Repeat 935125 935318 160 + . . scaffold22 GLEAN mRNA 934158 934478 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 934158 934478 31 - . . scaffold22 GLEAN mRNA 934583 934807 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 934583 934807 53 - . . scaffold22 GLEAN mRNA 934730 935083 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 934730 935083 98 - . . scaffold22 GLEAN mRNA 935536 935907 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 935536 935907 229 - . . scaffold22 GLEAN mRNA 935539 936081 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 935539 936081 27 - . . scaffold22 GLEAN mRNA 933888 934400 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 933888 934400 280 - . . scaffold22 GLEAN mRNA 1007568 1007618 0.999624 - . ID=CGI_10028889; scaffold22 TRF Tandem_Repeat 1007568 1007618 102 + . . scaffold22 GLEAN mRNA 1069415 1069842 0.983676 + . ID=CGI_10028894; scaffold22 TRF Tandem_Repeat 1069415 1069842 348 + . . scaffold22 GLEAN mRNA 1069407 1069842 0.983676 + . ID=CGI_10028894; scaffold22 TRF Tandem_Repeat 1069407 1069842 421 + . . scaffold22 GLEAN mRNA 1069407 1069842 0.983676 + . ID=CGI_10028894; scaffold22 TRF Tandem_Repeat 1069407 1069842 430 + . . scaffold22 GLEAN mRNA 1070044 1070137 0.983676 + . ID=CGI_10028894; scaffold22 TRF Tandem_Repeat 1070044 1070137 147 + . . scaffold22 GLEAN mRNA 1077787 1077838 0.99991 + . ID=CGI_10028895; scaffold22 TRF Tandem_Repeat 1077787 1077838 63 + . . scaffold22 GLEAN mRNA 1073448 1073597 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1073448 1073597 51 + . . scaffold22 GLEAN mRNA 1073807 1073998 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1073807 1073998 154 + . . scaffold22 GLEAN mRNA 1074783 1074995 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074783 1074995 83 + . . scaffold22 GLEAN mRNA 1074443 1074496 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074443 1074496 25 + . . scaffold22 GLEAN mRNA 1072791 1073057 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1072791 1073057 69 + . . scaffold22 GLEAN mRNA 1073780 1074010 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1073780 1074010 121 + . . scaffold22 GLEAN mRNA 1074457 1074633 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074457 1074633 73 + . . scaffold22 GLEAN mRNA 1074950 1075342 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074950 1075342 216 + . . scaffold22 GLEAN mRNA 1073554 1073694 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1073554 1073694 45 + . . scaffold22 GLEAN mRNA 1072854 1073057 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1072854 1073057 69 + . . scaffold22 GLEAN mRNA 1074147 1074419 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074147 1074419 51 + . . scaffold22 GLEAN mRNA 1073172 1073321 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1073172 1073321 78 + . . scaffold22 GLEAN mRNA 1073744 1073971 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1073744 1073971 76 + . . scaffold22 GLEAN mRNA 1074675 1074995 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074675 1074995 52 + . . scaffold22 GLEAN mRNA 1073439 1073567 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1073439 1073567 64 + . . scaffold22 GLEAN mRNA 1074496 1074633 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074496 1074633 81 + . . scaffold22 GLEAN mRNA 1073340 1073468 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1073340 1073468 41 + . . scaffold22 GLEAN mRNA 1074866 1075303 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1074866 1075303 113 + . . scaffold22 GLEAN mRNA 1076206 1076580 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LINE_Penelope 1076206 1076580 23 + . . scaffold22 GLEAN mRNA 1082672 1082926 0.644932 - . ID=CGI_10028896; scaffold22 WUBlastX LINE_L1-Tx1 1082672 1082926 88 + . . scaffold22 GLEAN mRNA 1083911 1084951 0.644932 - . ID=CGI_10028896; scaffold22 WUBlastX LINE_L2 1083911 1084951 565 + . . scaffold22 GLEAN mRNA 1082672 1082869 0.644932 - . ID=CGI_10028896; scaffold22 WUBlastX LINE_L1-Tx1 1082672 1082869 103 + . . scaffold22 GLEAN mRNA 1082330 1083010 0.644932 - . ID=CGI_10028896; scaffold22 WUBlastX LINE_L1-Tx1 1082330 1083010 79 + . . scaffold22 GLEAN mRNA 1085013 1085276 0.644932 - . ID=CGI_10028896; scaffold22 WUBlastX LINE_L2 1085013 1085276 135 + . . scaffold22 GLEAN mRNA 1083737 1085011 0.644932 - . ID=CGI_10028896; scaffold22 WUBlastX LINE_L2 1083737 1085011 487 + . . scaffold22 GLEAN mRNA 1081990 1082523 0.644932 - . ID=CGI_10028896; scaffold22 WUBlastX LINE_L1-Tx1 1081990 1082523 121 + . . scaffold22 GLEAN mRNA 1082950 1083744 0.644932 - . ID=CGI_10028896; scaffold22 WUBlastX LINE_L1-Tx1 1082950 1083744 115 + . . scaffold22 GLEAN mRNA 1085079 1085324 0.644932 - . ID=CGI_10028896; scaffold22 WUBlastX LINE_L2 1085079 1085324 34 + . . scaffold22 GLEAN mRNA 1124205 1124260 0.933697 + . ID=CGI_10028898; scaffold22 TRF Tandem_Repeat 1124205 1124260 112 + . . scaffold22 GLEAN mRNA 1130210 1130290 0.933697 + . ID=CGI_10028898; scaffold22 TRF Tandem_Repeat 1130210 1130290 62 + . . scaffold22 GLEAN mRNA 1132657 1132712 0.933697 + . ID=CGI_10028898; scaffold22 TRF Tandem_Repeat 1132657 1132712 112 + . . scaffold22 GLEAN mRNA 1136434 1136460 0.933697 + . ID=CGI_10028898; scaffold22 TRF Tandem_Repeat 1136434 1136460 54 + . . scaffold22 GLEAN mRNA 1136546 1136634 0.933697 + . ID=CGI_10028898; scaffold22 TRF Tandem_Repeat 1136546 1136634 65 + . . scaffold22 GLEAN mRNA 1136546 1136614 0.933697 + . ID=CGI_10028898; scaffold22 TRF Tandem_Repeat 1136546 1136614 97 + . . scaffold22 GLEAN mRNA 1177428 1177668 0.999676 - . ID=CGI_10028900; scaffold22 TRF Tandem_Repeat 1177428 1177668 113 + . . scaffold22 GLEAN mRNA 1177934 1178152 0.999676 - . ID=CGI_10028900; scaffold22 TRF Tandem_Repeat 1177934 1178152 172 + . . scaffold22 GLEAN mRNA 1186591 1186620 0.999676 - . ID=CGI_10028900; scaffold22 TRF Tandem_Repeat 1186591 1186620 60 + . . scaffold22 GLEAN mRNA 1192185 1192415 0.999676 - . ID=CGI_10028900; scaffold22 TRF Tandem_Repeat 1192185 1192415 453 + . . scaffold22 GLEAN mRNA 1202023 1202059 0.999332 + . ID=CGI_10028901; scaffold22 TRF Tandem_Repeat 1202023 1202059 74 + . . scaffold22 GLEAN mRNA 1220708 1220755 0.947052 + . ID=CGI_10028902; scaffold22 TRF Tandem_Repeat 1220708 1220755 96 + . . scaffold22 GLEAN mRNA 1281978 1282054 0.979343 - . ID=CGI_10028905; scaffold22 TRF Tandem_Repeat 1281978 1282054 57 + . . scaffold22 GLEAN mRNA 1312793 1313259 0.541396 + . ID=CGI_10028906; scaffold22 TRF Tandem_Repeat 1312793 1313259 580 + . . scaffold22 GLEAN mRNA 1313666 1313891 0.541396 + . ID=CGI_10028906; scaffold22 TRF Tandem_Repeat 1313666 1313891 283 + . . scaffold22 GLEAN mRNA 1313891 1314454 0.541396 + . ID=CGI_10028906; scaffold22 TRF Tandem_Repeat 1313891 1314454 620 + . . scaffold22 GLEAN mRNA 1318139 1318178 0.541396 + . ID=CGI_10028906; scaffold22 TRF Tandem_Repeat 1318139 1318178 80 + . . scaffold22 GLEAN mRNA 1320837 1320863 0.541396 + . ID=CGI_10028906; scaffold22 TRF Tandem_Repeat 1320837 1320863 54 + . . scaffold22 GLEAN mRNA 1321342 1321419 0.541396 + . ID=CGI_10028906; scaffold22 TRF Tandem_Repeat 1321342 1321419 133 + . . scaffold22 GLEAN mRNA 1316464 1316772 0.541396 + . ID=CGI_10028906; scaffold22 WUBlastX DNA_NOF 1316464 1316772 137 + . . scaffold22 GLEAN mRNA 1317043 1317144 0.541396 + . ID=CGI_10028906; scaffold22 WUBlastX DNA_NOF 1317043 1317144 58 + . . scaffold22 GLEAN mRNA 1317732 1317866 0.541396 + . ID=CGI_10028906; scaffold22 WUBlastX DNA_NOF 1317732 1317866 21 + . . scaffold22 GLEAN mRNA 1316335 1316706 0.541396 + . ID=CGI_10028906; scaffold22 WUBlastX DNA_MuDR 1316335 1316706 56 + . . scaffold22 GLEAN mRNA 1318312 1318968 0.541396 + . ID=CGI_10028906; scaffold22 WUBlastX DNA_NOF 1318312 1318968 52 + . . scaffold22 GLEAN mRNA 1368741 1368765 0.878621 - . ID=CGI_10028908; scaffold22 TRF Tandem_Repeat 1368741 1368765 50 + . . scaffold22 GLEAN mRNA 1373200 1373249 0.878621 - . ID=CGI_10028908; scaffold22 TRF Tandem_Repeat 1373200 1373249 50 + . . scaffold22 GLEAN mRNA 1373333 1373661 0.878621 - . ID=CGI_10028908; scaffold22 TRF Tandem_Repeat 1373333 1373661 128 + . . scaffold22 GLEAN mRNA 1373398 1373466 0.878621 - . ID=CGI_10028908; scaffold22 TRF Tandem_Repeat 1373398 1373466 52 + . . scaffold22 GLEAN mRNA 1373383 1373472 0.878621 - . ID=CGI_10028908; scaffold22 TRF Tandem_Repeat 1373383 1373472 62 + . . scaffold22 GLEAN mRNA 1373397 1373470 0.878621 - . ID=CGI_10028908; scaffold22 TRF Tandem_Repeat 1373397 1373470 69 + . . scaffold22 GLEAN mRNA 1373333 1373718 0.878621 - . ID=CGI_10028908; scaffold22 TRF Tandem_Repeat 1373333 1373718 97 + . . scaffold22 GLEAN mRNA 1373200 1373249 0.350572 + . ID=CGI_10028909; scaffold22 TRF Tandem_Repeat 1373200 1373249 50 + . . scaffold22 GLEAN mRNA 1373333 1373661 0.350572 + . ID=CGI_10028909; scaffold22 TRF Tandem_Repeat 1373333 1373661 128 + . . scaffold22 GLEAN mRNA 1373398 1373466 0.350572 + . ID=CGI_10028909; scaffold22 TRF Tandem_Repeat 1373398 1373466 52 + . . scaffold22 GLEAN mRNA 1373383 1373472 0.350572 + . ID=CGI_10028909; scaffold22 TRF Tandem_Repeat 1373383 1373472 62 + . . scaffold22 GLEAN mRNA 1373397 1373470 0.350572 + . ID=CGI_10028909; scaffold22 TRF Tandem_Repeat 1373397 1373470 69 + . . scaffold22 GLEAN mRNA 1373333 1373718 0.350572 + . ID=CGI_10028909; scaffold22 TRF Tandem_Repeat 1373333 1373718 97 + . . scaffold22 GLEAN mRNA 1447369 1448452 0.431458 + . ID=CGI_10028915; scaffold22 TRF Tandem_Repeat 1447369 1448452 1875 + . . scaffold22 GLEAN mRNA 1449199 1449692 0.431458 + . ID=CGI_10028915; scaffold22 TRF Tandem_Repeat 1449199 1449692 855 + . . scaffold22 GLEAN mRNA 1458796 1458864 0.431458 + . ID=CGI_10028915; scaffold22 TRF Tandem_Repeat 1458796 1458864 129 + . . scaffold22 GLEAN mRNA 1458170 1458491 0.431458 + . ID=CGI_10028915; scaffold22 TRF Tandem_Repeat 1458170 1458491 500 + . . scaffold22 GLEAN mRNA 1464238 1464607 0.933197 + . ID=CGI_10028916; scaffold22 TRF Tandem_Repeat 1464238 1464607 473 + . . scaffold22 GLEAN mRNA 1464238 1464607 0.933197 + . ID=CGI_10028916; scaffold22 TRF Tandem_Repeat 1464238 1464607 523 + . . scaffold22 GLEAN mRNA 1469407 1469446 1 - . ID=CGI_10028917; scaffold22 TRF Tandem_Repeat 1469407 1469446 80 + . . scaffold22 GLEAN mRNA 1645408 1645456 0.331553 + . ID=CGI_10028925; scaffold22 TRF Tandem_Repeat 1645408 1645456 98 + . . scaffold22 GLEAN mRNA 1660322 1660407 0.396422 - . ID=CGI_10028926; scaffold22 TRF Tandem_Repeat 1660322 1660407 95 + . . scaffold22 GLEAN mRNA 1660324 1660397 0.396422 - . ID=CGI_10028926; scaffold22 TRF Tandem_Repeat 1660324 1660397 105 + . . scaffold22 GLEAN mRNA 1660909 1660958 0.396422 - . ID=CGI_10028926; scaffold22 TRF Tandem_Repeat 1660909 1660958 100 + . . scaffold22 GLEAN mRNA 1685979 1686015 0.999948 + . ID=CGI_10028928; scaffold22 TRF Tandem_Repeat 1685979 1686015 74 + . . scaffold22 GLEAN mRNA 1686106 1686143 0.999948 + . ID=CGI_10028928; scaffold22 TRF Tandem_Repeat 1686106 1686143 76 + . . scaffold22 GLEAN mRNA 1689092 1689126 0.999948 + . ID=CGI_10028928; scaffold22 TRF Tandem_Repeat 1689092 1689126 61 + . . scaffold22 GLEAN mRNA 1700579 1700609 0.999948 + . ID=CGI_10028928; scaffold22 TRF Tandem_Repeat 1700579 1700609 62 + . . scaffold22 GLEAN mRNA 1700628 1700655 0.999948 + . ID=CGI_10028928; scaffold22 TRF Tandem_Repeat 1700628 1700655 56 + . . scaffold22 GLEAN mRNA 1710916 1710942 0.998897 + . ID=CGI_10028929; scaffold22 TRF Tandem_Repeat 1710916 1710942 54 + . . scaffold22 GLEAN mRNA 1711887 1711941 0.998897 + . ID=CGI_10028929; scaffold22 TRF Tandem_Repeat 1711887 1711941 103 + . . scaffold22 GLEAN mRNA 1712600 1712649 0.998897 + . ID=CGI_10028929; scaffold22 TRF Tandem_Repeat 1712600 1712649 57 + . . scaffold22 GLEAN mRNA 1717831 1717883 0.998897 + . ID=CGI_10028929; scaffold22 TRF Tandem_Repeat 1717831 1717883 106 + . . scaffold22 GLEAN mRNA 1748210 1748264 0.648316 + . ID=CGI_10028931; scaffold22 TRF Tandem_Repeat 1748210 1748264 110 + . . scaffold22 GLEAN mRNA 1765849 1765901 1 + . ID=CGI_10028933; scaffold22 TRF Tandem_Repeat 1765849 1765901 90 + . . scaffold22 GLEAN mRNA 1796574 1796607 0.865666 - . ID=CGI_10028934; scaffold22 TRF Tandem_Repeat 1796574 1796607 68 + . . scaffold22 GLEAN mRNA 1819567 1819881 0.988961 + . ID=CGI_10028935; scaffold22 WUBlastX LTR_Gypsy 1819567 1819881 25 + . . scaffold22 GLEAN mRNA 1863538 1863687 0.647996 + . ID=CGI_10028937; scaffold22 WUBlastX DNA_TcMar-Fot1 1863538 1863921 48 + . . scaffold22 GLEAN mRNA 1863347 1863442 0.647996 + . ID=CGI_10028937; scaffold22 WUBlastX DNA_TcMar-Fot1 1863119 1863442 65 + . . scaffold22 GLEAN mRNA 1863772 1863942 0.544455 + . ID=CGI_10028938; scaffold22 WUBlastX DNA_TcMar-Tc2 1863772 1863942 57 + . . scaffold22 GLEAN mRNA 1863760 1863921 0.544455 + . ID=CGI_10028938; scaffold22 WUBlastX DNA_TcMar-Fot1 1863538 1863921 48 + . . scaffold22 GLEAN mRNA 1873216 1873294 0.999933 - . ID=CGI_10028939; scaffold22 TRF Tandem_Repeat 1873216 1873294 158 + . . scaffold22 GLEAN mRNA 1879835 1879975 0.999933 - . ID=CGI_10028939; scaffold22 TRF Tandem_Repeat 1879835 1879975 138 + . . scaffold22 GLEAN mRNA 1880967 1881100 0.999933 - . ID=CGI_10028939; scaffold22 TRF Tandem_Repeat 1880967 1881100 121 + . .