/gscratch/scrubbed/yaamini/data/Gigas-WGBS/2019-09-03-Trimmed-Files/YRVL_R1_001.fastq.gz and /gscratch/scrubbed/yaamini/data/Gigas-WGBS/2019-09-03-Trimmed-Files/YRVL_R2_001.fastq.gz
Data processed at 23:10 on 2020-02-12
Alignment Stats
Sequence pairs analysed in total
66590575
Paired-end alignments with a unique best hit
42554384
Pairs without alignments under any condition
19593685
Pairs that did not map uniquely
4442506
Genomic sequence context not extractable (edges of chromosomes)
15181
Cytosine Methylation
Total C's analysed
1975323986
Methylated C's in CpG context
36708077
Methylated C's in CHG context
12605227
Methylated C's in CHH context
59188038
Methylated C's in Unknown context
2509847
Unmethylated C's in CpG context
203868749
Unmethylated C's in CHG context
314647529
Unmethylated C's in CHH context
1348306366
Unmethylated C's in Unknown context
12087334
Percentage methylation (CpG context)
15.3%
Percentage methylation (CHG context)
3.9%
Percentage methylation (CHH context)
4.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
21265268
original top strand
CTOT
12105
complementary to original top strand
CTOB
13209
complementary to original bottom strand
OB
21248621
original bottom strand
Deduplication
Alignments analysed
42539203
Unique alignments
38688147
Duplicates removed
3851056
Duplicated alignments were found at 3464155 different positions
