YRVA_R1_001_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 38329181 lines in total Total number of methylation call strings processed: 76658362 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1373661079 Total methylated C's in CpG context: 26565256 Total methylated C's in CHG context: 9456529 Total methylated C's in CHH context: 44402726 Total C to T conversions in CpG context: 141927641 Total C to T conversions in CHG context: 218892506 Total C to T conversions in CHH context: 932416421 C methylated in CpG context: 15.8% C methylated in CHG context: 4.1% C methylated in CHH context: 4.5%