/gscratch/scrubbed/yaamini/data/Gigas-WGBS/2019-09-03-Trimmed-Files/YRVA_R1_001.fastq.gz and /gscratch/scrubbed/yaamini/data/Gigas-WGBS/2019-09-03-Trimmed-Files/YRVA_R2_001.fastq.gz
Data processed at 23:10 on 2020-02-12
Alignment Stats
Sequence pairs analysed in total
67542867
Paired-end alignments with a unique best hit
43217945
Pairs without alignments under any condition
19815721
Pairs that did not map uniquely
4509201
Genomic sequence context not extractable (edges of chromosomes)
15910
Cytosine Methylation
Total C's analysed
2014476985
Methylated C's in CpG context
38388669
Methylated C's in CHG context
12919248
Methylated C's in CHH context
61221106
Methylated C's in Unknown context
2748438
Unmethylated C's in CpG context
208388236
Unmethylated C's in CHG context
321769730
Unmethylated C's in CHH context
1371789996
Unmethylated C's in Unknown context
12474356
Percentage methylation (CpG context)
15.6%
Percentage methylation (CHG context)
3.9%
Percentage methylation (CHH context)
4.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
21607927
original top strand
CTOT
16626
complementary to original top strand
CTOB
17271
complementary to original bottom strand
OB
21560211
original bottom strand
Deduplication
Alignments analysed
43202035
Unique alignments
38329181
Duplicates removed
4872854
Duplicated alignments were found at 4302912 different positions
