GeneID	logFC	logCPM	F	PValue	FDR	Accession	Isoform	E-value	ProteinN	GO_BP	GO_CC	GO_MF	GO	Status	Organism	S_10B	S_9A	S_13A	S_42A	S_46B	S_47B	S_48B	S_2A	S_2B	S_7B	S_8B	S_33A	S_36B	S_38A	S_40A
1	TRINITY_DN102431_c0_g1	7.87968942125049	1.5948412518851	9.62074706954095	0.00646939513530696	0.039492658666223	Q7ZX51	TRINITY_DN102431_c0_g1_i1	1.4e-40	Tyrosine--tRNA ligase, cytoplasmic (EC 6.1.1.1) (Tyrosyl-tRNA synthetase) (TyrRS)	tyrosyl-tRNA aminoacylation [GO:0006437]	cytoplasm [GO:0005737]	ATP binding [GO:0005524]; tRNA binding [GO:0000049]; tyrosine-tRNA ligase activity [GO:0004831]	GO:0000049; GO:0004831; GO:0005524; GO:0005737; GO:0006437	reviewed	Xenopus laevis (African clawed frog)	0	0	2	0	2	4	0	0	0	0	0	0	0	0	0
2	TRINITY_DN104822_c0_g1	7.2646109600931	1.86000224765433	8.55833466951696	0.00835486014031411	0.0485146193888783	Q69LE0	TRINITY_DN104822_c0_g1_i1	7.2e-13	Zinc finger A20 and AN1 domain-containing stress-associated protein 10 (OsSAP10)			DNA binding [GO:0003677]; zinc ion binding [GO:0008270]	GO:0003677; GO:0008270	reviewed	Oryza sativa subsp. japonica (Rice)	0	1	7	5	1	0	0	0	0	0	0	0	2	0	0
3	TRINITY_DN111410_c0_g1	15.9133315206676	4.65609815132548	44.6980857487081	3.79590747515608e-06	6.3504506138422e-05	Q9W020	TRINITY_DN111410_c0_g1_i1	7.3e-08	Nucleolar MIF4G domain-containing protein 1 homolog	ribosomal small subunit biogenesis [GO:0042274]	nucleolus [GO:0005730]	RNA binding [GO:0003723]	GO:0003723; GO:0005730; GO:0042274	reviewed	Drosophila melanogaster (Fruit fly)	48	23	115	4	8	7	4	0	0	0	0	0	0	0	0
4	TRINITY_DN111543_c0_g1	8.1412344734979	2.26341977851795	10.3970134849236	0.00496921783510854	0.031935813591931	O65202	TRINITY_DN111543_c0_g1_i1	4.3e-10	Peroxisomal acyl-coenzyme A oxidase 1 (AOX 1) (EC 1.3.3.6) (Long-chain acyl-CoA oxidase) (AtCX1)	fatty acid beta-oxidation [GO:0006635]; fatty acid beta-oxidation using acyl-CoA oxidase [GO:0033540]; jasmonic acid biosynthetic process [GO:0009695]; lipid homeostasis [GO:0055088]; long-chain fatty acid metabolic process [GO:0001676]; response to cadmium ion [GO:0046686]; response to fungus [GO:0009620]; response to wounding [GO:0009611]	peroxisome [GO:0005777]; plasmodesma [GO:0009506]	acyl-CoA oxidase activity [GO:0003997]; FAD binding [GO:0071949]; fatty acid binding [GO:0005504]; flavin adenine dinucleotide binding [GO:0050660]	GO:0001676; GO:0003997; GO:0005504; GO:0005777; GO:0006635; GO:0009506; GO:0009611; GO:0009620; GO:0009695; GO:0033540; GO:0046686; GO:0050660; GO:0055088; GO:0071949	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	1	0	4	5	1	15	0	0	0	0	0	0	0	0
5	TRINITY_DN111591_c0_g1	6.20588447438575	1.38382252295707	9.46735665406913	0.00682292957271527	0.0412440762256909	O67876	TRINITY_DN111591_c0_g1_i1	1.1e-41	Delta-aminolevulinic acid dehydratase (ALAD) (ALADH) (EC 4.2.1.24) (Porphobilinogen synthase)	heme biosynthetic process [GO:0006783]; protoporphyrinogen IX biosynthetic process [GO:0006782]	cytosol [GO:0005829]	porphobilinogen synthase activity [GO:0004655]; zinc ion binding [GO:0008270]	GO:0004655; GO:0005829; GO:0006782; GO:0006783; GO:0008270	reviewed	Aquifex aeolicus (strain VF5)	1	2	2	1	0	0	0	0	0	0	0	0	0	0	0
6	TRINITY_DN139711_c0_g1	7.93013287608335	1.61513954555166	11.0002933789178	0.00407225176378168	0.0273991721932702	P21187	TRINITY_DN139711_c0_g1_i1	1.5e-24	Polyadenylate-binding protein (PABP) (Poly(A)-binding protein)	chemical synaptic transmission [GO:0007268]; dorsal/ventral pattern formation [GO:0009953]; male meiosis cytokinesis [GO:0007112]; male meiotic nuclear division [GO:0007140]; mRNA splicing, via spliceosome [GO:0000398]; negative regulation of neuron death [GO:1901215]; oocyte development [GO:0048599]; oogenesis [GO:0048477]; positive regulation of translation [GO:0045727]; regulation of compound eye photoreceptor development [GO:0045314]; spermatid nucleus differentiation [GO:0007289]; spermatogenesis [GO:0007283]	catalytic step 2 spliceosome [GO:0071013]; cytoplasm [GO:0005737]; cytoplasmic stress granule [GO:0010494]; cytosol [GO:0005829]; nucleus [GO:0005634]; precatalytic spliceosome [GO:0071011]; ribonucleoprotein complex [GO:1990904]	mRNA 3'-UTR binding [GO:0003730]; mRNA binding [GO:0003729]; poly(A) binding [GO:0008143]; poly(U) RNA binding [GO:0008266]; RNA binding [GO:0003723]	GO:0000398; GO:0003723; GO:0003729; GO:0003730; GO:0005634; GO:0005737; GO:0005829; GO:0007112; GO:0007140; GO:0007268; GO:0007283; GO:0007289; GO:0008143; GO:0008266; GO:0009953; GO:0010494; GO:0045314; GO:0045727; GO:0048477; GO:0048599; GO:0071011; GO:0071013; GO:1901215; GO:1990904	reviewed	Drosophila melanogaster (Fruit fly)	2	0	5	0	1	1	0	0	0	0	0	0	0	0	0
7	TRINITY_DN151645_c0_g1	7.52140563089698	2.00155015844305	9.40084266028603	0.00608783595563467	0.0376837045653786	Q9NP78	TRINITY_DN151645_c0_g1_i1	1.7e-21	ATP-binding cassette sub-family B member 9 (ATP-binding cassette transporter 9) (ABC transporter 9 protein) (hABCB9) (TAP-like protein) (TAPL)	peptide transport [GO:0015833]; protein transport [GO:0015031]; transmembrane transport [GO:0055085]	integral component of endoplasmic reticulum membrane [GO:0030176]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; lysosomal membrane [GO:0005765]; lysosome [GO:0005764]	ATPase activity [GO:0016887]; ATPase-coupled peptide transmembrane transporter activity [GO:0015440]; ATPase-coupled transmembrane transporter activity [GO:0042626]; ATP binding [GO:0005524]; protein homodimerization activity [GO:0042803]; transmembrane transporter activity [GO:0022857]	GO:0005524; GO:0005764; GO:0005765; GO:0015031; GO:0015440; GO:0015833; GO:0016021; GO:0016887; GO:0022857; GO:0030176; GO:0042626; GO:0042803; GO:0043231; GO:0055085	reviewed	Homo sapiens (Human)	0	0	5	5	4	2	1	1	0	2	0	0	0	0	0
8	TRINITY_DN151688_c0_g1	8.34870737629413	1.72994777259998	9.95717811227088	0.00576408631020783	0.0360129296042038	P56701	TRINITY_DN151688_c0_g1_i1	2.3e-53	26S proteasome non-ATPase regulatory subunit 2 (26S proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) (Tumor necrosis factor type 1 receptor-associated protein 2)	proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; regulation of protein catabolic process [GO:0042176]	nucleus [GO:0005634]; proteasome accessory complex [GO:0022624]; proteasome regulatory particle, base subcomplex [GO:0008540]; proteasome storage granule [GO:0034515]	enzyme regulator activity [GO:0030234]	GO:0005634; GO:0008540; GO:0022624; GO:0030234; GO:0034515; GO:0042176; GO:0043161	reviewed	Bos taurus (Bovine)	0	0	2	0	4	5	0	0	0	0	0	0	0	0	0
9	TRINITY_DN151705_c0_g1	10.1247178718277	2.11114246946171	11.5647594100327	0.00339523631269556	0.02378727601884	Q9D1Q6	TRINITY_DN151705_c0_g1_i1	8e-55	Endoplasmic reticulum resident protein 44 (ER protein 44) (ERp44) (Thioredoxin domain-containing protein 4)	cell redox homeostasis [GO:0045454]; glycoprotein metabolic process [GO:0009100]; protein folding [GO:0006457]; response to endoplasmic reticulum stress [GO:0034976]; response to unfolded protein [GO:0006986]	cell surface [GO:0009986]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; endoplasmic reticulum lumen [GO:0005788]; endoplasmic reticulum membrane [GO:0005789]	protein disulfide isomerase activity [GO:0003756]	GO:0003756; GO:0005788; GO:0005789; GO:0005793; GO:0006457; GO:0006986; GO:0009100; GO:0009986; GO:0034976; GO:0045454	reviewed	Mus musculus (Mouse)	0	0	4	0	4	10	0	0	0	0	0	0	0	0	0
10	TRINITY_DN172833_c0_g1	-12.5378847527906	3.0798143220118	17.4024283731941	0.000571330990979595	0.00540755173419525	O49561	TRINITY_DN172833_c0_g1_i1	7.6e-72	Gibberellin 2-beta-dioxygenase 8 (EC 1.14.11.13) (GA 2-oxidase 8) (Gibberellin 2-beta-hydroxylase 8) (Gibberellin 2-oxidase 8)	gibberellin biosynthetic process [GO:0009686]; gibberellin metabolic process [GO:0009685]		C-20 gibberellin 2-beta-dioxygenase activity [GO:0052635]; dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872]	GO:0009685; GO:0009686; GO:0046872; GO:0051213; GO:0052635	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	0	0	0	0	0	9	11	10	0	35	5	17	7
11	TRINITY_DN172940_c0_g1	9.13456988244307	1.84225530996764	10.6034649710433	0.00463933352453247	0.0302926946380337	Q5I0P2	TRINITY_DN172940_c0_g1_i1	1e-38	Glycine cleavage system H protein, mitochondrial (Lipoic acid-containing protein)	glycine decarboxylation via glycine cleavage system [GO:0019464]; protein lipoylation [GO:0009249]	glycine cleavage complex [GO:0005960]; mitochondrion [GO:0005739]	aminomethyltransferase activity [GO:0004047]; enzyme binding [GO:0019899]	GO:0004047; GO:0005739; GO:0005960; GO:0009249; GO:0019464; GO:0019899	reviewed	Rattus norvegicus (Rat)	0	0	3	0	2	7	0	0	0	0	0	0	0	0	0
12	TRINITY_DN175296_c0_g1	6.81293083122452	8.11125034407833	66.485637870996	3.05689608622685e-08	7.62991402167105e-07	P29057	TRINITY_DN175296_c0_g1_i1	4.6e-64	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (EC 1.1.1.34)	coenzyme A metabolic process [GO:0015936]; isoprenoid biosynthetic process [GO:0008299]	endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; plastid membrane [GO:0042170]	coenzyme binding [GO:0050662]; hydroxymethylglutaryl-CoA reductase (NADPH) activity [GO:0004420]	GO:0004420; GO:0005789; GO:0008299; GO:0015936; GO:0016021; GO:0031966; GO:0042170; GO:0050662	reviewed	Hevea brasiliensis (Para rubber tree) (Siphonia brasiliensis)	119	181	96	524	1130	295	300	54	34	80	64	13	57	31	16
13	TRINITY_DN2119_c1_g1	10.9741872629148	2.21468691727132	19.6004368394045	0.000367455600986505	0.003716585245272	Q8GWR0	TRINITY_DN2119_c1_g1_i1	1.4e-39	Cytochrome c oxidase assembly protein COX11, mitochondrial	pollen germination [GO:0009846]; positive regulation of cytochrome-c oxidase activity [GO:1904960]; post-embryonic root morphogenesis [GO:0010101]	integral component of mitochondrial membrane [GO:0032592]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]	copper ion binding [GO:0005507]; protein self-association [GO:0043621]	GO:0005507; GO:0005739; GO:0005743; GO:0009846; GO:0010101; GO:0032592; GO:0043621; GO:1904960	reviewed	Arabidopsis thaliana (Mouse-ear cress)	9	6	0	5	5	2	2	0	0	0	0	0	0	0	0
14	TRINITY_DN22035_c0_g1	7.09886168550539	1.52754073122055	9.65099966553804	0.00640213750992197	0.039159319354167	O42899	TRINITY_DN22035_c0_g1_i1	5e-34	Protein sco1	cellular copper ion homeostasis [GO:0006878]; copper ion transport [GO:0006825]; mitochondrial respiratory chain complex IV assembly [GO:0033617]	mitochondrial inner membrane [GO:0005743]	copper chaperone activity [GO:0016531]	GO:0005743; GO:0006825; GO:0006878; GO:0016531; GO:0033617	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	4	1	2	0	0	1	0	0	0	0	0	0	0	0	0
15	TRINITY_DN223640_c0_g1	-9.41295525077448	1.99729760369355	11.7067945868638	0.00303675750628274	0.0219567023924577	P74327	TRINITY_DN223640_c0_g1_i1	8.3e-16	Mini-ribonuclease 3 (Mini-3) (Mini-RNase 3) (EC 3.1.26.-) (Mini-RNase III) (Mini-III)	rRNA processing [GO:0006364]	cytoplasm [GO:0005737]	ribonuclease III activity [GO:0004525]; rRNA binding [GO:0019843]	GO:0004525; GO:0005737; GO:0006364; GO:0019843	reviewed	Synechocystis sp. (strain PCC 6803 / Kazusa)	0	0	0	0	0	0	0	9	3	0	1	6	2	4	5
16	TRINITY_DN223644_c0_g1	20.6924368189445	7.45346723942539	170.78880349714	2.90296845909061e-11	1.05702204481005e-09	Q9P783	TRINITY_DN223644_c0_g1_i1	4.9e-38	Ribosome assembly protein rrb1	ribosome biogenesis [GO:0042254]; rRNA processing [GO:0006364]	cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]		GO:0005634; GO:0005730; GO:0005829; GO:0006364; GO:0042254	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	137	141	78	253	462	351	190	0	0	0	0	0	0	1	0
17	TRINITY_DN223830_c0_g1	-10.2542107653628	6.69830326632133	30.1729126166447	1.37837928515505e-05	0.000205100186901678	Q38885	TRINITY_DN223830_c0_g1_i1	2.1e-92	Preprotein translocase subunit SCY1, chloroplastic (CpSecY)	SRP-dependent cotranslational protein targeting to membrane, translocation [GO:0006616]; thylakoid membrane organization [GO:0010027]	chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]	protein transmembrane transporter activity [GO:0008320]; signal sequence binding [GO:0005048]	GO:0005048; GO:0006616; GO:0008320; GO:0009507; GO:0009535; GO:0010027; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)	5	0	1	4	0	7	6	472	337	211	169	212	50	179	105
18	TRINITY_DN226183_c0_g1	21.5700322243233	8.16700716581045	218.934245822972	2.97392099009046e-13	1.83668953395763e-11	Q54EW1	TRINITY_DN226183_c0_g1_i2	1.2e-158	Serine hydroxymethyltransferase 2 (SHMT 2) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 2) (Serine methylase 2)	cellular response to tetrahydrofolate [GO:1904482]; folic acid metabolic process [GO:0046655]; glycine biosynthetic process from serine [GO:0019264]; glycine metabolic process [GO:0006544]; L-serine catabolic process [GO:0006565]; one-carbon metabolic process [GO:0006730]; tetrahydrofolate interconversion [GO:0035999]; tetrahydrofolate metabolic process [GO:0046653]	mitochondrial matrix [GO:0005759]	amino acid binding [GO:0016597]; cobalt ion binding [GO:0050897]; glycine hydroxymethyltransferase activity [GO:0004372]; pyridoxal phosphate binding [GO:0030170]; serine binding [GO:0070905]; zinc ion binding [GO:0008270]	GO:0004372; GO:0005759; GO:0006544; GO:0006565; GO:0006730; GO:0008270; GO:0016597; GO:0019264; GO:0030170; GO:0035999; GO:0046653; GO:0046655; GO:0050897; GO:0070905; GO:1904482	reviewed	Dictyostelium discoideum (Slime mold)	537	323	412	292	407	418	260	0	1	0	0	0	0	1	0
19	TRINITY_DN226613_c0_g1	8.26883152059342	1.90330493806649	11.7770242132737	0.00263590748074506	0.0196108982041008	P00505	TRINITY_DN226613_c0_g1_i1	5.6e-92	Aspartate aminotransferase, mitochondrial (mAspAT) (EC 2.6.1.1) (EC 2.6.1.7) (Fatty acid-binding protein) (FABP-1) (Glutamate oxaloacetate transaminase 2) (Kynurenine aminotransferase 4) (Kynurenine aminotransferase IV) (Kynurenine--oxoglutarate transaminase 4) (Kynurenine--oxoglutarate transaminase IV) (Plasma membrane-associated fatty acid-binding protein) (FABPpm) (Transaminase A)	2-oxoglutarate metabolic process [GO:0006103]; 4-hydroxyproline catabolic process [GO:0019470]; aspartate biosynthetic process [GO:0006532]; aspartate catabolic process [GO:0006533]; aspartate metabolic process [GO:0006531]; cellular amino acid biosynthetic process [GO:0008652]; fatty acid transport [GO:0015908]; female pregnancy [GO:0007565]; gluconeogenesis [GO:0006094]; glutamate catabolic process to 2-oxoglutarate [GO:0019551]; glutamate catabolic process to aspartate [GO:0019550]; glutamate metabolic process [GO:0006536]; glyoxylate metabolic process [GO:0046487]; lactation [GO:0007595]; oxaloacetate metabolic process [GO:0006107]; response to ethanol [GO:0045471]; response to insulin [GO:0032868]; response to morphine [GO:0043278]; response to muscle activity [GO:0014850]	cell surface [GO:0009986]; extracellular exosome [GO:0070062]; mitochondrial inner membrane [GO:0005743]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; perikaryon [GO:0043204]; plasma membrane [GO:0005886]; protein-containing complex [GO:0032991]; T-tubule [GO:0030315]	amino acid binding [GO:0016597]; enzyme binding [GO:0019899]; kynurenine-oxoglutarate transaminase activity [GO:0016212]; L-aspartate:2-oxoglutarate aminotransferase activity [GO:0004069]; phospholipid binding [GO:0005543]; protein homodimerization activity [GO:0042803]; pyridoxal phosphate binding [GO:0030170]; RNA binding [GO:0003723]	GO:0003723; GO:0004069; GO:0005543; GO:0005739; GO:0005743; GO:0005759; GO:0005886; GO:0006094; GO:0006103; GO:0006107; GO:0006531; GO:0006532; GO:0006533; GO:0006536; GO:0007565; GO:0007595; GO:0008652; GO:0009986; GO:0014850; GO:0015908; GO:0016212; GO:0016597; GO:0019470; GO:0019550; GO:0019551; GO:0019899; GO:0030170; GO:0030315; GO:0032868; GO:0032991; GO:0042803; GO:0043204; GO:0043278; GO:0045471; GO:0046487; GO:0070062	reviewed	Homo sapiens (Human)	1	11	1	0	0	4	2	0	0	0	0	0	1	0	0
20	TRINITY_DN226664_c0_g1	5.87987693401137	8.41391991556176	28.0492128601106	2.23467059597902e-05	0.000311545292547525	Q9ZVP5	TRINITY_DN226664_c0_g1_i1	7.2e-70	Mitogen-activated protein kinase kinase kinase 18 (EC 2.7.11.25)	abscisic acid-activated signaling pathway [GO:0009738]; activation of protein kinase activity [GO:0032147]; negative regulation of stomatal opening [GO:1902457]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of leaf senescence [GO:1900057]; protein autophosphorylation [GO:0046777]; regulation of stomatal complex development [GO:2000038]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; MAP kinase kinase kinase activity [GO:0004709]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]	GO:0004672; GO:0004674; GO:0004709; GO:0005524; GO:0005634; GO:0005737; GO:0006970; GO:0009737; GO:0009738; GO:0009789; GO:0023014; GO:0031098; GO:0032147; GO:0046777; GO:1900057; GO:1902457; GO:2000038	reviewed	Arabidopsis thaliana (Mouse-ear cress)	210	171	180	243	524	314	1021	33	23	20	79	245	81	81	30
21	TRINITY_DN226686_c0_g1	19.096578977277	7.87506781209436	152.14946035482	1.24949051634347e-11	4.65924475672657e-10	Q13630	TRINITY_DN226686_c0_g1_i1	2.8e-116	GDP-L-fucose synthase (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase) (Protein FX) (Red cell NADP(H)-binding protein) (Short-chain dehydrogenase/reductase family 4E member 1)	'de novo' GDP-L-fucose biosynthetic process [GO:0042351]; GDP-mannose metabolic process [GO:0019673]; leukocyte cell-cell adhesion [GO:0007159]; T cell mediated cytotoxicity [GO:0001913]	cytosol [GO:0005829]; extracellular exosome [GO:0070062]	coenzyme binding [GO:0050662]; electron transfer activity [GO:0009055]; GDP-4-dehydro-D-rhamnose reductase activity [GO:0042356]; GDP-L-fucose synthase activity [GO:0050577]; GDP-mannose 3,5-epimerase activity [GO:0047918]; identical protein binding [GO:0042802]	GO:0001913; GO:0005829; GO:0007159; GO:0009055; GO:0019673; GO:0042351; GO:0042356; GO:0042802; GO:0047918; GO:0050577; GO:0050662; GO:0070062	reviewed	Homo sapiens (Human)	417	305	328	266	407	316	188	1	0	0	2	0	0	2	0
22	TRINITY_DN226922_c0_g1	11.6487199419298	3.0216937543442	18.9414580616512	0.000307841773369018	0.00322972979178682	Q9LSG3	TRINITY_DN226922_c0_g1_i1	3.4e-08	Galacturonosyltransferase 8 (EC 2.4.1.-) (Glycosyltransferase QUASIMODO1)	cell adhesion [GO:0007155]; homogalacturonan biosynthetic process [GO:0010289]; pectin biosynthetic process [GO:0045489]	endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; trans-Golgi network [GO:0005802]	polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; transferase activity, transferring glycosyl groups [GO:0016757]	GO:0000139; GO:0005739; GO:0005768; GO:0005794; GO:0005802; GO:0007155; GO:0010289; GO:0016021; GO:0016757; GO:0045489; GO:0047262	reviewed	Arabidopsis thaliana (Mouse-ear cress)	1	0	13	11	3	2	22	0	0	0	0	0	1	0	0
23	TRINITY_DN227360_c0_g2	8.19768846534768	1.63390718845402	10.3875724661154	0.00498492390704313	0.031935813591931	F4HZF0	TRINITY_DN227360_c0_g2_i1	2.2e-38	Kinesin-like protein KIN-14H	microtubule-based movement [GO:0007018]	kinesin complex [GO:0005871]; microtubule [GO:0005874]	ATPase activity [GO:0016887]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]	GO:0003777; GO:0005524; GO:0005871; GO:0005874; GO:0007018; GO:0008017; GO:0016887	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	3	5	0	0	2	0	0	0	0	0	0	0	0	0
24	TRINITY_DN228040_c0_g1	9.55323310824479	2.23065400795893	10.2205223392912	0.00527229801147318	0.0332337318645814	Q9BZE4	TRINITY_DN228040_c0_g1_i1	4.7e-35	Nucleolar GTP-binding protein 1 (Chronic renal failure gene protein) (GTP-binding protein NGB)	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; negative regulation of cell-cell adhesion [GO:0022408]; negative regulation of cell migration [GO:0030336]; negative regulation of cell population proliferation [GO:0008285]; negative regulation of collagen binding [GO:0033342]; negative regulation of DNA replication [GO:0008156]; negative regulation of protein ubiquitination [GO:0031397]; osteoblast differentiation [GO:0001649]; protein stabilization [GO:0050821]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; nuclear membrane [GO:0031965]; nucleolus [GO:0005730]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; RNA binding [GO:0003723]	GO:0000079; GO:0000463; GO:0001649; GO:0003723; GO:0003924; GO:0005525; GO:0005634; GO:0005730; GO:0005737; GO:0005794; GO:0005829; GO:0008156; GO:0008285; GO:0016020; GO:0022408; GO:0030336; GO:0031397; GO:0031965; GO:0033342; GO:0048471; GO:0050821	reviewed	Homo sapiens (Human)	0	0	2	0	4	14	0	0	0	0	0	0	0	0	0
25	TRINITY_DN228042_c0_g1	-9.49567955250392	2.51746084479244	13.7757809797515	0.00128949429523451	0.0107573715464982	O80528	TRINITY_DN228042_c0_g1_i1	6.6e-58	Serine/threonine-protein kinase haspin homolog (AtHaspin) (EC 2.7.11.1)	histone H3-T11 phosphorylation [GO:0035407]; histone H3-T3 phosphorylation [GO:0072355]; intracellular signal transduction [GO:0035556]; mitotic cell cycle [GO:0000278]	chromosome [GO:0005694]; cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]; phragmoplast [GO:0009524]	ATP binding [GO:0005524]; histone kinase activity (H3-T11 specific) [GO:0035402]; histone kinase activity (H3-T3 specific) [GO:0072354]; protein serine/threonine kinase activity [GO:0004674]	GO:0000278; GO:0004674; GO:0005524; GO:0005634; GO:0005694; GO:0005737; GO:0005856; GO:0009524; GO:0035402; GO:0035407; GO:0035556; GO:0048471; GO:0072354; GO:0072355	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	0	0	1	0	0	10	14	5	3	11	1	7	6
26	TRINITY_DN231207_c0_g1	-6.31619944660782	5.90398826453452	14.5972451922431	0.000875660266266619	0.00781028393111005	Q7Y1L9	TRINITY_DN231207_c0_g1_i1	1.1e-12	Protein SPIRAL1-like 1	cortical microtubule organization [GO:0043622]	cortical microtubule, transverse to long axis [GO:0010005]		GO:0010005; GO:0043622	reviewed	Oryza sativa subsp. japonica (Rice)	13	2	1	8	2	10	2	69	77	34	38	204	136	157	102
27	TRINITY_DN231504_c0_g1	8.45299749601324	1.65092527045084	10.3859108549	0.00498769395059818	0.031935813591931	Q5F3X0	TRINITY_DN231504_c0_g1_i1	6.8e-28	Lysocardiolipin acyltransferase 1 (EC 2.3.1.-) (1-acylglycerol-3-phosphate O-acyltransferase 8) (1-AGP acyltransferase 8) (1-AGPAT 8) (EC 2.3.1.51) (Acyl-CoA:lysocardiolipin acyltransferase 1)	CDP-diacylglycerol biosynthetic process [GO:0016024]; multicellular organism development [GO:0007275]; phosphatidylinositol acyl-chain remodeling [GO:0036149]; phospholipid metabolic process [GO:0006644]	cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]	1-acylglycerol-3-phosphate O-acyltransferase activity [GO:0003841]; transferase activity, transferring acyl groups [GO:0016746]	GO:0003841; GO:0005783; GO:0005789; GO:0005829; GO:0006644; GO:0007275; GO:0016021; GO:0016024; GO:0016746; GO:0036149	reviewed	Gallus gallus (Chicken)	0	0	3	0	2	4	0	0	0	0	0	0	0	0	0
28	TRINITY_DN231598_c0_g2	8.12375488354626	1.58522331791075	10.433902600956	0.00490838177928324	0.0316488366810034	Q95JF4	TRINITY_DN231598_c0_g2_i1	8.6e-25	DnaJ homolog subfamily A member 1 (DnaJ protein homolog 2) (DJ-2) (Mydj2)	negative regulation of apoptotic process [GO:0043066]; negative regulation of JUN kinase activity [GO:0043508]; positive regulation of apoptotic process [GO:0043065]; protein folding [GO:0006457]; protein localization to mitochondrion [GO:0070585]; regulation of protein transport [GO:0051223]; response to heat [GO:0009408]	endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]	ATPase activator activity [GO:0001671]; ATP binding [GO:0005524]; chaperone binding [GO:0051087]; Hsp70 protein binding [GO:0030544]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]	GO:0001671; GO:0005524; GO:0005634; GO:0005739; GO:0005783; GO:0006457; GO:0009408; GO:0016020; GO:0030544; GO:0043065; GO:0043066; GO:0043508; GO:0046872; GO:0048471; GO:0051082; GO:0051087; GO:0051223; GO:0070585	reviewed	Chlorocebus aethiops (Green monkey) (Cercopithecus aethiops)	0	0	3	0	4	2	0	0	0	0	0	0	0	0	0
29	TRINITY_DN233040_c0_g2	9.01509648081959	1.81279509324418	10.8732493226023	0.00424482770321828	0.028314098580734	Q9VVI9	TRINITY_DN233040_c0_g2_i1	1.8e-38	Charged multivesicular body protein 5 (Vacuolar protein-sorting-associated protein 60)	endosome transport via multivesicular body sorting pathway [GO:0032509]; protein transport [GO:0015031]; vacuolar transport [GO:0007034]	ESCRT III complex [GO:0000815]		GO:0000815; GO:0007034; GO:0015031; GO:0032509	reviewed	Drosophila melanogaster (Fruit fly)	0	0	3	0	5	5	0	0	0	0	0	0	0	0	0
30	TRINITY_DN233686_c0_g1	10.9752491924003	4.80041697933975	19.9824664203	0.000173874389433226	0.00199311568628087	Q9XIV8	TRINITY_DN233686_c0_g1_i1	6.2e-98	Peroxidase N1 (EC 1.11.1.7) (Peroxidase B2) (Peroxidase B3)	hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979]	extracellular region [GO:0005576]	heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]	GO:0004601; GO:0005576; GO:0006979; GO:0020037; GO:0042744; GO:0046872	reviewed	Nicotiana tabacum (Common tobacco)	37	69	99	2	0	28	5	0	1	1	0	0	6	3	0
31	TRINITY_DN234168_c0_g1	19.7079584123126	6.83063999213227	121.478969124765	5.90763057517921e-10	1.70879594674576e-08	P40412	TRINITY_DN234168_c0_g1_i1	4e-09	T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19)	protein folding [GO:0006457]	cytoplasm [GO:0005737]	ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]	GO:0005524; GO:0005737; GO:0006457; GO:0051082	reviewed	Avena sativa (Oat)	226	295	139	175	112	126	76	0	0	1	1	0	0	0	0
32	TRINITY_DN234177_c0_g1	-7.18633570346576	4.01711896032251	10.981187206467	0.00302410226226205	0.0219567023924577	Q9FIK1	TRINITY_DN234177_c0_g1_i1	2.4e-105	BTB/POZ domain-containing protein At5g47800	protein ubiquitination [GO:0016567]			GO:0016567	reviewed	Arabidopsis thaliana (Mouse-ear cress)	6	1	4	1	0	0	0	22	25	18	4	60	7	45	15
33	TRINITY_DN234179_c0_g1	9.67590241722468	3.59248768734876	14.0305622493554	0.00127114598915495	0.0106617800445381	Q9NRD8	TRINITY_DN234179_c0_g1_i1	7.5e-21	Dual oxidase 2 (EC 1.11.1.-) (EC 1.6.3.1) (Large NOX 2) (Long NOX 2) (NADH/NADPH thyroid oxidase p138-tox) (NADPH oxidase/peroxidase DUOX2) (NADPH thyroid oxidase 2) (Thyroid oxidase 2) (p138 thyroid oxidase)	cuticle development [GO:0042335]; cytokine-mediated signaling pathway [GO:0019221]; defense response [GO:0006952]; hormone biosynthetic process [GO:0042446]; hydrogen peroxide biosynthetic process [GO:0050665]; hydrogen peroxide catabolic process [GO:0042744]; oxidation-reduction process [GO:0055114]; positive regulation of cell motility [GO:2000147]; positive regulation of wound healing [GO:0090303]; response to cAMP [GO:0051591]; response to oxidative stress [GO:0006979]; response to virus [GO:0009615]; superoxide anion generation [GO:0042554]; thyroid hormone generation [GO:0006590]	apical part of cell [GO:0045177]; apical plasma membrane [GO:0016324]; cell junction [GO:0030054]; cell leading edge [GO:0031252]; cell surface [GO:0009986]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; extracellular exosome [GO:0070062]; NADPH oxidase complex [GO:0043020]; plasma membrane [GO:0005886]	calcium ion binding [GO:0005509]; heme binding [GO:0020037]; NAD(P)H oxidase activity [GO:0016174]; peroxidase activity [GO:0004601]; superoxide-generating NADPH oxidase activity [GO:0016175]	GO:0004601; GO:0005509; GO:0005783; GO:0005829; GO:0005886; GO:0006590; GO:0006952; GO:0006979; GO:0009615; GO:0009986; GO:0016174; GO:0016175; GO:0016324; GO:0019221; GO:0020037; GO:0030054; GO:0031252; GO:0042335; GO:0042446; GO:0042554; GO:0042744; GO:0043020; GO:0045177; GO:0050665; GO:0051591; GO:0055114; GO:0070062; GO:0090303; GO:2000147	reviewed	Homo sapiens (Human)	0	18	4	39	56	0	1	0	0	0	0	0	7	1	1
34	TRINITY_DN238280_c0_g1	10.0903010984653	2.24598420492404	11.0533406447161	0.00400254324359354	0.027106939472477	O01541	TRINITY_DN238280_c0_g1_i1	2.4e-61	Alanine--tRNA ligase, cytoplasmic (EC 6.1.1.7) (AlaRS A) (Alanyl-tRNA synthetase)	alanyl-tRNA aminoacylation [GO:0006419]; tRNA modification [GO:0006400]	mitochondrion [GO:0005739]	alanine-tRNA ligase activity [GO:0004813]; amino acid binding [GO:0016597]; aminoacyl-tRNA editing activity [GO:0002161]; ATP binding [GO:0005524]; tRNA binding [GO:0000049]; zinc ion binding [GO:0008270]	GO:0000049; GO:0002161; GO:0004813; GO:0005524; GO:0005739; GO:0006400; GO:0006419; GO:0008270; GO:0016597	reviewed	Caenorhabditis elegans	0	0	3	0	3	14	0	0	0	0	0	0	0	0	0
35	TRINITY_DN250557_c0_g1	8.74475812263883	3.71919390303516	16.9359851632017	0.000421332088496308	0.00416620707315039	Q9LMN7	TRINITY_DN250557_c0_g1_i1	3.3e-134	Wall-associated receptor kinase 5 (EC 2.7.11.-)		integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005509; GO:0005524; GO:0005886; GO:0016021; GO:0030247	reviewed	Arabidopsis thaliana (Mouse-ear cress)	27	25	19	5	8	9	13	0	2	0	0	2	3	4	0
36	TRINITY_DN251094_c0_g1	-11.6137891335525	2.58839853092571	18.5117272830378	0.000427145244768292	0.00421023736483396	Q8LC69	TRINITY_DN251094_c0_g1_i1	2e-35	RING-H2 finger protein ATL8 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL8)	protein ubiquitination [GO:0016567]	integral component of membrane [GO:0016021]	metal ion binding [GO:0046872]; transferase activity [GO:0016740]	GO:0016021; GO:0016567; GO:0016740; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	0	0	0	0	0	14	16	5	4	9	5	9	4
37	TRINITY_DN251132_c0_g1	-6.91757419907991	5.53108009654409	9.09759345688199	0.00614533994137113	0.0379637267835203	Q651J5	TRINITY_DN251132_c0_g1_i1	5.7e-28	Phosphate transporter PHO1-3 (Protein PHO1-3) (OsPHO1;3)	cellular response to phosphate starvation [GO:0016036]; phosphate ion transport [GO:0006817]	Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]	inositol hexakisphosphate binding [GO:0000822]; phosphate ion transmembrane transporter activity [GO:0015114]	GO:0000822; GO:0005794; GO:0005802; GO:0005886; GO:0006817; GO:0015114; GO:0016021; GO:0016036	reviewed	Oryza sativa subsp. japonica (Rice)	4	0	0	1	3	21	2	138	15	45	2	120	33	292	22
38	TRINITY_DN25194_c0_g1	-7.09012252809885	1.59624670569206	9.13257306128789	0.00731526539940161	0.0439626143905786	B1Q3J6	TRINITY_DN25194_c0_g1_i1	4.3e-80	DNA (cytosine-5)-methyltransferase 1B (OsMET1b) (EC 2.1.1.37) (DNA methyltransferase 1-2) (OsMET1-2)	DNA methylation on cytosine within a CG sequence [GO:0010424]; embryo development ending in seed dormancy [GO:0009793]; maintenance of DNA methylation [GO:0010216]; regulation of gene expression by genetic imprinting [GO:0006349]	nucleus [GO:0005634]	chromatin binding [GO:0003682]; DNA (cytosine-5-)-methyltransferase activity [GO:0003886]; DNA binding [GO:0003677]	GO:0003677; GO:0003682; GO:0003886; GO:0005634; GO:0006349; GO:0009793; GO:0010216; GO:0010424	reviewed	Oryza sativa subsp. japonica (Rice)	0	0	0	0	0	0	0	2	1	5	5	0	1	1	1
39	TRINITY_DN252333_c0_g1	-4.10398329184335	10.3933854325209	9.8829804067485	0.00454493553424549	0.0299288839967868	P92934	TRINITY_DN252333_c0_g1_i1	1.1e-31	Amino acid permease 6 (Amino acid transporter AAP6)	amino acid transmembrane transport [GO:0003333]; aspartate transmembrane transport [GO:0015810]; tryptophan transport [GO:0015827]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	acidic amino acid transmembrane transporter activity [GO:0015172]; amino acid transmembrane transporter activity [GO:0015171]; neutral amino acid transmembrane transporter activity [GO:0015175]; symporter activity [GO:0015293]	GO:0003333; GO:0005886; GO:0015171; GO:0015172; GO:0015175; GO:0015293; GO:0015810; GO:0015827; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)	224	9	211	97	85	597	569	1692	1202	2185	297	2642	1216	3500	4537
40	TRINITY_DN252362_c0_g1	-3.64981933835391	7.75818887354762	13.4244893584957	0.00128861672430503	0.0107573715464982	Q9M0E2	TRINITY_DN252362_c0_g1_i1	2.2e-32	60S ribosomal protein L28-2	translation [GO:0006412]	cytosolic large ribosomal subunit [GO:0022625]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005886; GO:0006412; GO:0009506; GO:0022625	reviewed	Arabidopsis thaliana (Mouse-ear cress)	126	80	143	13	16	31	34	480	307	345	412	236	241	571	275
41	TRINITY_DN252876_c0_g1	10.5537190747034	7.62793884860265	57.1695076537629	1.10380182132436e-07	2.3399086554787e-06	Q0JGM8	TRINITY_DN252876_c0_g1_i1	1.8e-19	Cysteine proteinase inhibitor 5 (Oryzacystatin V) (OC-V) (Oryzacystatin-5)	defense response [GO:0006952]	extracellular region [GO:0005576]	cysteine-type endopeptidase inhibitor activity [GO:0004869]	GO:0004869; GO:0005576; GO:0006952	reviewed	Oryza sativa subsp. japonica (Rice)	128	232	134	266	146	277	509	15	1	5	7	30	15	6	1
42	TRINITY_DN254083_c0_g1	-2.9895013383217	7.73595468380302	8.59757473934057	0.00748277979295478	0.0447953645245552	Q9AST6	TRINITY_DN254083_c0_g1_i1	3e-19	Vacuolar protein sorting-associated protein 55 homolog	late endosome to vacuole transport via multivesicular body sorting pathway [GO:0032511]; negative regulation of protein localization to cell surface [GO:2000009]; protein transport [GO:0015031]	endosome [GO:0005768]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; vacuole [GO:0005773]		GO:0005768; GO:0005773; GO:0010008; GO:0015031; GO:0016021; GO:0032511; GO:2000009	reviewed	Arabidopsis thaliana (Mouse-ear cress)	146	104	69	72	6	35	59	562	480	441	331	211	212	331	271
43	TRINITY_DN254084_c0_g1	17.1564807889615	5.2595179969131	61.9879839654261	1.47426522272083e-07	3.04190057621398e-06	Q47BF5	TRINITY_DN254084_c0_g1_i1	5.6e-35	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase (HMG aldolase) (EC 4.1.3.17) (Oxaloacetate decarboxylase) (OAA decarboxylase) (EC 4.1.1.112) (Regulator of ribonuclease activity homolog) (RraA-like protein)	regulation of RNA metabolic process [GO:0051252]		4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [GO:0047443]; metal ion binding [GO:0046872]; ribonuclease inhibitor activity [GO:0008428]	GO:0008428; GO:0046872; GO:0047443; GO:0051252	reviewed	Dechloromonas aromatica (strain RCB)	64	89	21	57	50	62	24	1	0	0	0	0	0	0	0
44	TRINITY_DN254239_c0_g1	21.5676430656157	9.56454507521048	246.323330788228	8.60821846411745e-14	7.01116740695882e-12	Q9FVI2	TRINITY_DN254239_c0_g1_i1	4.9e-10	Actin-depolymerizing factor 1 (ADF-1)	actin filament depolymerization [GO:0030042]	actin cytoskeleton [GO:0015629]	actin binding [GO:0003779]	GO:0003779; GO:0015629; GO:0030042	reviewed	Petunia hybrida (Petunia)	1154	1123	598	1741	1155	1147	409	2	0	0	1	0	0	4	0
45	TRINITY_DN254309_c0_g1	24.4763234462992	8.2152659615535	275.516426563172	5.95611498770717e-12	2.36335588294278e-10	Q9SDS7	TRINITY_DN254309_c0_g1_i1	1.9e-40	V-type proton ATPase subunit C (V-ATPase subunit C) (Vacuolar H(+)-ATPase subunit C) (Vacuolar proton pump subunit C)	ATP hydrolysis coupled proton transport [GO:0015991]; unidimensional cell growth [GO:0009826]	chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuolar proton-transporting V-type ATPase, V1 domain [GO:0000221]; vacuole [GO:0005773]	proton-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]	GO:0000221; GO:0000325; GO:0005773; GO:0005774; GO:0005794; GO:0005886; GO:0008553; GO:0009507; GO:0009826; GO:0015991; GO:0046961	reviewed	Arabidopsis thaliana (Mouse-ear cress)	550	391	375	379	446	393	281	0	0	0	0	0	0	0	0
46	TRINITY_DN25521_c0_g1	5.98420024193541	2.85647963419005	10.1208873443849	0.00415525703005228	0.0277765021771313	Q9C8D1	TRINITY_DN25521_c0_g1_i1	3.2e-12	U-box domain-containing protein 20 (EC 2.3.2.27) (Plant U-box protein 20) (RING-type E3 ubiquitin transferase PUB20)	response to chitin [GO:0010200]		ubiquitin-protein transferase activity [GO:0004842]	GO:0004842; GO:0010200	reviewed	Arabidopsis thaliana (Mouse-ear cress)	4	16	2	8	12	4	7	1	2	1	1	1	2	2	0
47	TRINITY_DN255257_c0_g1	23.2563543554459	9.0001595874337	298.037892454782	1.13130589541778e-14	1.90575791791826e-12	P14906	TRINITY_DN255257_c0_g1_i1	1.1e-28	Protein translocation protein SEC63 (Protein NPL1) (Sec62/63 complex 73 kDa subunit)	cytosol to endoplasmic reticulum transport [GO:0046967]; posttranslational protein targeting to endoplasmic reticulum membrane [GO:0006620]; posttranslational protein targeting to membrane, translocation [GO:0031204]; SRP-dependent cotranslational protein targeting to membrane [GO:0006614]	endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; nuclear inner membrane [GO:0005637]; Sec62/Sec63 complex [GO:0031207]	protein transmembrane transporter activity [GO:0008320]	GO:0005637; GO:0005739; GO:0005783; GO:0006614; GO:0006620; GO:0008320; GO:0016021; GO:0031204; GO:0031207; GO:0046967	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	729	654	1076	557	697	636	405	0	0	0	1	0	1	0	0
48	TRINITY_DN255876_c0_g1	21.8899917528121	9.27647504529289	350.67490028809	1.95959567909052e-15	8.15188158761435e-13	Q9SGE9	TRINITY_DN255876_c0_g1_i1	5.4e-135	Phenylalanine--tRNA ligase beta subunit, cytoplasmic (EC 6.1.1.20) (Phenylalanyl-tRNA synthetase beta subunit) (PheRS)	phenylalanyl-tRNA aminoacylation [GO:0006432]	cytosol [GO:0005829]; phenylalanine-tRNA ligase complex [GO:0009328]	ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phenylalanine-tRNA ligase activity [GO:0004826]; RNA binding [GO:0003723]	GO:0000287; GO:0003723; GO:0004826; GO:0005524; GO:0005829; GO:0006432; GO:0009328	reviewed	Arabidopsis thaliana (Mouse-ear cress)	935	752	921	647	1083	898	573	1	0	0	1	0	1	1	1
49	TRINITY_DN255899_c0_g1	-6.08164880303806	5.93159634791703	14.0309809632793	0.00105341307647549	0.00913253073302978	O48788	TRINITY_DN255899_c0_g1_i1	3.3e-87	Probable inactive receptor kinase At2g26730		integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	ATP binding [GO:0005524]; protein kinase activity [GO:0004672]	GO:0004672; GO:0005524; GO:0005886; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)	9	7	2	12	1	15	5	177	94	51	34	143	67	255	65
50	TRINITY_DN255905_c0_g1	7.7737128478193	1.87070305008503	10.5466473984161	0.0047275900074818	0.0308039812066446	O76039	TRINITY_DN255905_c0_g1_i1	2.7e-27	Cyclin-dependent kinase-like 5 (EC 2.7.11.22) (Serine/threonine-protein kinase 9)	neuron migration [GO:0001764]; positive regulation of axon extension [GO:0045773]; positive regulation of dendrite morphogenesis [GO:0050775]; positive regulation of dendritic spine development [GO:0060999]; positive regulation of GTPase activity [GO:0043547]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; regulation of cilium assembly [GO:1902017]; regulation of dendrite development [GO:0050773]; regulation of postsynapse organization [GO:0099175]	centrosome [GO:0005813]; ciliary basal body [GO:0036064]; ciliary tip [GO:0097542]; cytosol [GO:0005829]; dendrite cytoplasm [GO:0032839]; dendritic growth cone [GO:0044294]; glutamatergic synapse [GO:0098978]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]; postsynaptic density, intracellular component [GO:0099092]; ruffle membrane [GO:0032587]	ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; Rac GTPase binding [GO:0048365]	GO:0001764; GO:0004672; GO:0004674; GO:0004693; GO:0005524; GO:0005634; GO:0005654; GO:0005813; GO:0005829; GO:0006468; GO:0016301; GO:0032587; GO:0032839; GO:0036064; GO:0043547; GO:0044294; GO:0045773; GO:0046777; GO:0048365; GO:0048471; GO:0050773; GO:0050775; GO:0060999; GO:0097542; GO:0098978; GO:0099092; GO:0099175; GO:1902017	reviewed	Homo sapiens (Human)	1	0	0	2	3	5	3	0	0	0	0	0	0	0	0
51	TRINITY_DN255960_c0_g1	10.3270327609439	2.71605758204736	11.0941373399017	0.00394984693503924	0.0268830195739531	Q92122	TRINITY_DN255960_c0_g1_i1	2.5e-153	Pyruvate kinase PKM (EC 2.7.1.40) (Cytosolic thyroid hormone-binding protein) (CTHBP)			ATP binding [GO:0005524]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743]	GO:0000287; GO:0004743; GO:0005524; GO:0016301; GO:0030955	reviewed	Xenopus laevis (African clawed frog)	0	0	2	0	14	21	0	0	0	0	0	0	0	0	0
52	TRINITY_DN255993_c0_g1	12.3811057051814	3.19235588713018	16.8470408745976	0.000736896386572825	0.00678778070369908	P0DJ52	TRINITY_DN255993_c0_g1_i1	1.5e-105	60S ribosomal protein L8	translation [GO:0006412]	ribosome [GO:0005840]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005840; GO:0006412; GO:0019843	reviewed	Tetrahymena thermophila (strain SB210)	3	0	49	1	0	3	1	0	0	0	0	0	0	0	0
53	TRINITY_DN256219_c0_g2	19.7113305833241	6.52137333126069	102.673683443645	2.49250998994938e-09	6.70810297295072e-08	Q9NZB8	TRINITY_DN256219_c0_g2_i1	6.1e-70	Molybdenum cofactor biosynthesis protein 1 (Cell migration-inducing gene 11 protein) (Molybdenum cofactor synthesis-step 1 protein A-B) [Includes: GTP 3',8-cyclase (EC 4.1.99.22) (Molybdenum cofactor biosynthesis protein A); Cyclic pyranopterin monophosphate synthase (EC 4.6.1.17) (Molybdenum cofactor biosynthesis protein C)]	molybdopterin cofactor biosynthetic process [GO:0032324]; Mo-molybdopterin cofactor biosynthetic process [GO:0006777]	cytosol [GO:0005829]; molybdopterin synthase complex [GO:0019008]; nucleus [GO:0005634]	4 iron, 4 sulfur cluster binding [GO:0051539]; cyclic pyranopterin monophosphate synthase activity [GO:0061799]; GTP 3',8'-cyclase activity [GO:0061798]; GTP binding [GO:0005525]; metal ion binding [GO:0046872]	GO:0005525; GO:0005634; GO:0005829; GO:0006777; GO:0019008; GO:0032324; GO:0046872; GO:0051539; GO:0061798; GO:0061799	reviewed	Homo sapiens (Human)	134	250	159	84	92	119	66	0	0	0	1	0	0	0	0
54	TRINITY_DN256326_c0_g1	16.0227157691198	4.1368311950585	44.2831479662696	4.02480926289295e-06	6.69719605841597e-05	Q8GXU8	TRINITY_DN256326_c0_g1_i2	7.8e-15	1-acyl-sn-glycerol-3-phosphate acyltransferase LPAT1, chloroplastic (EC 2.3.1.51) (EC 2.3.1.n4) (Lysophosphatidyl acyltransferase 1) (Protein EMBRYO DEFECTIVE 1995)	CDP-diacylglycerol biosynthetic process [GO:0016024]; embryo development ending in seed dormancy [GO:0009793]; phosphatidic acid biosynthetic process [GO:0006654]; phosphatidylglycerol biosynthetic process [GO:0006655]	chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plastid [GO:0009536]	1-acylglycerol-3-phosphate O-acyltransferase activity [GO:0003841]	GO:0003841; GO:0005783; GO:0006654; GO:0006655; GO:0009507; GO:0009536; GO:0009793; GO:0009941; GO:0016021; GO:0016024; GO:0031969	reviewed	Arabidopsis thaliana (Mouse-ear cress)	18	118	10	15	12	18	10	0	0	0	0	0	0	0	0
55	TRINITY_DN256462_c0_g1	2.11606484026021	11.1433419024515	10.7262136242286	0.00331936687145527	0.0233557884319311	Q9LVQ4	TRINITY_DN256462_c0_g1_i1	1.3e-31	WEB family protein At5g55860	cellular response to mechanical stimulus [GO:0071260]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903]	cytosol [GO:0005829]; plasma membrane [GO:0005886]		GO:0005829; GO:0005886; GO:0009903; GO:0009904; GO:0071260	reviewed	Arabidopsis thaliana (Mouse-ear cress)	3753	3039	2781	1101	1065	838	1994	2699	2333	2255	1169	1289	1514	1566	1202
56	TRINITY_DN256514_c0_g2	-3.88316214746561	7.67987491048751	13.8555407178639	0.00111621636711696	0.00962309096442057	P35686	TRINITY_DN256514_c0_g2_i2	3.3e-38	40S ribosomal protein S20	translation [GO:0006412]	cytosolic small ribosomal subunit [GO:0022627]	RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]	GO:0003723; GO:0003735; GO:0006412; GO:0022627	reviewed	Oryza sativa subsp. japonica (Rice)	111	42	73	27	11	33	48	410	308	333	342	212	310	683	249
57	TRINITY_DN256557_c0_g2	8.14274602726073	1.66289252258366	9.69298101949023	0.00631010820542639	0.0387495732059418	Q09541	TRINITY_DN256557_c0_g2_i1	1.4e-27	Tripeptidyl-peptidase 2 (TPP2) (EC 3.4.14.10) (Tripeptidyl aminopeptidase) (Tripeptidyl peptidase II) (TPPII)	positive regulation of lipid storage [GO:0010884]	cytosol [GO:0005829]	aminopeptidase activity [GO:0004177]; serine-type endopeptidase activity [GO:0004252]; tripeptidyl-peptidase activity [GO:0008240]	GO:0004177; GO:0004252; GO:0005829; GO:0008240; GO:0010884	reviewed	Caenorhabditis elegans	0	0	2	0	2	5	0	0	0	0	0	0	0	0	0
58	TRINITY_DN257902_c0_g1	7.76956209583395	3.04099550689789	8.82282492151437	0.00684429844450728	0.0412925997772905	Q8NBN7	TRINITY_DN257902_c0_g1_i1	4.1e-22	Retinol dehydrogenase 13 (EC 1.1.1.300) (Short chain dehydrogenase/reductase family 7C member 3)	eye photoreceptor cell development [GO:0042462]; response to high light intensity [GO:0009644]; retina layer formation [GO:0010842]; retinal metabolic process [GO:0042574]	mitochondrial inner membrane [GO:0005743]	NADP-retinol dehydrogenase activity [GO:0052650]	GO:0005743; GO:0009644; GO:0010842; GO:0042462; GO:0042574; GO:0052650	reviewed	Homo sapiens (Human)	0	35	0	1	38	6	2	1	0	3	0	0	3	0	0
59	TRINITY_DN257903_c0_g1	9.68930711647837	1.95357090604082	13.6511686145971	0.00179339798465376	0.0140877328997548	A6VYC5	TRINITY_DN257903_c0_g1_i1	0.00019	UPF0176 protein Mmwyl1_2535					reviewed	Marinomonas sp. (strain MWYL1)	3	1	1	0	0	6	4	0	0	0	0	0	0	0	0
60	TRINITY_DN259162_c0_g1	-8.02182513309664	1.67815359939065	10.5632821236206	0.00443636670404804	0.0293387926261297	P0C8K6	TRINITY_DN259162_c0_g1_i1	2e-25	60S ribosomal protein L2, mitochondrial	translation [GO:0006412]	mitochondrion [GO:0005739]; ribosome [GO:0005840]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005739; GO:0005840; GO:0006412	reviewed	Oryza sativa (Rice)	0	0	0	0	0	0	0	4	1	4	3	0	1	3	3
61	TRINITY_DN259522_c0_g1	6.73734959877337	3.04671747337592	9.24595761705227	0.00580087077372167	0.0361241348987295	Q852N6	TRINITY_DN259522_c0_g1_i1	6.3e-186	Calcium-dependent protein kinase 11 (OsCDPK11) (OsCPK11) (EC 2.7.11.1)	abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]	cytoplasm [GO:0005737]; membrane [GO:0016020]; nucleus [GO:0005634]	ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calcium ion binding [GO:0005509]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]	GO:0004683; GO:0005509; GO:0005516; GO:0005524; GO:0005634; GO:0005737; GO:0009738; GO:0009931; GO:0016020; GO:0018105; GO:0035556; GO:0046777	reviewed	Oryza sativa subsp. japonica (Rice)	15	8	24	3	1	2	2	4	0	1	0	0	1	0	2
62	TRINITY_DN259522_c1_g1	-6.8007892820938	4.26027550396215	12.1273013138584	0.00200943405695563	0.0155479960156942	Q8LPZ7	TRINITY_DN259522_c1_g1_i1	2.2e-129	Calcium-dependent protein kinase 3 (OsCDPK3) (OsCPK3) (EC 2.7.11.1)	abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]	cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]	ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calcium ion binding [GO:0005509]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]	GO:0004683; GO:0005509; GO:0005516; GO:0005524; GO:0005634; GO:0005737; GO:0005886; GO:0009738; GO:0009931; GO:0018105; GO:0035556; GO:0046777	reviewed	Oryza sativa subsp. japonica (Rice)	4	12	2	1	0	1	0	26	34	34	11	41	16	39	46
63	TRINITY_DN259595_c0_g1	22.6374068610491	11.268516045962	240.921691991863	1.08794885913567e-13	8.47710001436069e-12	P43644	TRINITY_DN259595_c0_g1_i1	1.1e-83	DnaJ protein homolog ANJ1	protein folding [GO:0006457]; response to heat [GO:0009408]	membrane [GO:0016020]	ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]	GO:0005524; GO:0006457; GO:0009408; GO:0016020; GO:0031072; GO:0046872; GO:0051082	reviewed	Atriplex nummularia (Old man saltbush) (Atriplex johnstonii)	4200	5842	8169	1070	1760	1622	1516	0	1	5	9	0	0	3	1
64	TRINITY_DN271000_c0_g1	21.7563053192141	8.75935447869139	240.759165320043	1.25297618601496e-12	6.15549412018462e-11	Q9K8E9	TRINITY_DN271000_c0_g1_i1	2e-84	3-isopropylmalate dehydrogenase (EC 1.1.1.85) (3-IPM-DH) (Beta-IPM dehydrogenase) (IMDH)	leucine biosynthetic process [GO:0009098]	cytoplasm [GO:0005737]	3-isopropylmalate dehydrogenase activity [GO:0003862]; magnesium ion binding [GO:0000287]; NAD binding [GO:0051287]	GO:0000287; GO:0003862; GO:0005737; GO:0009098; GO:0051287	reviewed	Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)	420	297	167	814	859	859	491	0	0	0	0	1	0	3	0
65	TRINITY_DN271057_c0_g1	-3.29030989757718	6.88236634452749	8.24609402919979	0.00861415489360587	0.0495243949538105	F4IP69	TRINITY_DN271057_c0_g1_i1	1.1e-206	Sec1 family domain-containing protein MIP3 (MAG2-interacting protein 3)	protein maturation [GO:0051604]; protein transport [GO:0015031]; vacuolar protein processing [GO:0006624]; vesicle docking involved in exocytosis [GO:0006904]	endoplasmic reticulum membrane [GO:0005789]; vacuole [GO:0005773]		GO:0005773; GO:0005789; GO:0006624; GO:0006904; GO:0015031; GO:0051604	reviewed	Arabidopsis thaliana (Mouse-ear cress)	62	111	47	23	3	19	21	303	251	264	216	126	113	205	105
66	TRINITY_DN271251_c0_g1	-5.80988523758241	8.22016375514264	40.1518401504663	1.81085994242874e-06	3.18443836466873e-05	Q8W207	TRINITY_DN271251_c0_g1_i1	6.6e-124	COP9 signalosome complex subunit 2 (Signalosome subunit 2) (Protein FUSCA 12)	multicellular organism development [GO:0007275]; negative regulation of transcription, DNA-templated [GO:0045892]; protein catabolic process [GO:0030163]; protein deneddylation [GO:0000338]; red, far-red light phototransduction [GO:0009585]	COP9 signalosome [GO:0008180]; cytosol [GO:0005829]; nucleus [GO:0005634]	transcription corepressor activity [GO:0003714]	GO:0000338; GO:0003714; GO:0005634; GO:0005829; GO:0007275; GO:0008180; GO:0009585; GO:0030163; GO:0045892	reviewed	Arabidopsis thaliana (Mouse-ear cress)	88	65	60	28	11	25	30	856	777	731	625	396	244	496	460
67	TRINITY_DN271265_c0_g1	23.1810571665582	8.99217130737707	282.068674063099	2.85837153506691e-13	1.805440796129e-11	P11029	TRINITY_DN271265_c0_g1_i1	0	Acetyl-CoA carboxylase (ACC) (EC 6.4.1.2) [Includes: Biotin carboxylase (EC 6.3.4.14)]	fatty acid biosynthetic process [GO:0006633]; malonyl-CoA biosynthetic process [GO:2001295]; positive regulation of gene expression [GO:0010628]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of biological quality [GO:0065008]; regulation of gene expression, epigenetic [GO:0040029]; response to carbohydrate [GO:0009743]; response to fatty acid [GO:0070542]; response to thyroid hormone [GO:0097066]; transport [GO:0006810]	cell [GO:0005623]; cytoplasm [GO:0005737]	acetyl-CoA carboxylase activity [GO:0003989]; ATP binding [GO:0005524]; biotin binding [GO:0009374]; biotin carboxylase activity [GO:0004075]; DBD domain binding [GO:0050692]; metal ion binding [GO:0046872]; signaling receptor binding [GO:0005102]; sterol response element binding [GO:0032810]; thyroid hormone receptor binding [GO:0046966]	GO:0003989; GO:0004075; GO:0005102; GO:0005524; GO:0005623; GO:0005737; GO:0006633; GO:0006810; GO:0009374; GO:0009743; GO:0010628; GO:0032810; GO:0040029; GO:0045893; GO:0046872; GO:0046966; GO:0050692; GO:0065008; GO:0070542; GO:0097066; GO:2001295	reviewed	Gallus gallus (Chicken)	1438	715	1041	272	503	384	522	0	1	1	2	0	0	0	0
68	TRINITY_DN271268_c0_g1	16.7956199169717	5.65559645728972	65.9143820682111	9.1695444119229e-08	2.01274751453201e-06	Q9P7N1	TRINITY_DN271268_c0_g1_i1	1.9e-23	EKC/KEOPS complex subunit SPAP27G11.07c (EC 3.6.-.-) (Atypical serine/threonine protein kinase BUD32 homolog) (EC 2.7.11.1)	protein phosphorylation [GO:0006468]; tRNA threonylcarbamoyladenosine metabolic process [GO:0070525]; tRNA threonylcarbamoyladenosine modification [GO:0002949]	chromosome, telomeric region [GO:0000781]; cytosol [GO:0005829]; EKC/KEOPS complex [GO:0000408]; nucleus [GO:0005634]	ATPase activity [GO:0016887]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]	GO:0000408; GO:0000781; GO:0002949; GO:0004674; GO:0005524; GO:0005634; GO:0005829; GO:0006468; GO:0016887; GO:0070525	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	31	32	23	78	120	106	50	0	0	0	0	0	0	0	1
69	TRINITY_DN271275_c0_g1	-5.72715617040659	6.76897269128516	19.7442707749418	0.000185867952549414	0.00210718429721771	O82197	TRINITY_DN271275_c0_g1_i1	1.7e-36	Vacuolar protein sorting-associated protein 32 homolog 1 (AtVPS32-1) (Charged multivesicular body protein 4 homolog 1) (ESCRT-III complex subunit VPS32 homolog 1)	protein transport [GO:0015031]; vacuolar transport [GO:0007034]	ESCRT III complex [GO:0000815]; plasma membrane [GO:0005886]		GO:0000815; GO:0005886; GO:0007034; GO:0015031	reviewed	Arabidopsis thaliana (Mouse-ear cress)	33	6	20	23	7	4	11	241	146	143	166	238	183	272	180
70	TRINITY_DN271596_c0_g1	8.91662404629201	1.94151296592286	10.2210832979425	0.00527130225213102	0.0332337318645814	B7ZFT1	TRINITY_DN271596_c0_g1_i1	9.6e-19	Glutaredoxin-1 (Glutathione-dependent oxidoreductase 1)	cell redox homeostasis [GO:0045454]	cytosol [GO:0005829]	electron transfer activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]	GO:0005829; GO:0009055; GO:0015035; GO:0045454	reviewed	Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) (Arbuscular mycorrhizal fungus) (Glomus intraradices)	0	0	2	0	7	7	0	0	0	0	0	0	0	0	0
71	TRINITY_DN271641_c0_g3	8.62600725644175	1.70370765306676	11.9389043597786	0.00301653690902748	0.0219567023924577	Q86AQ7	TRINITY_DN271641_c0_g3_i1	1.6e-50	Vesicle-associated membrane protein 7B	endosome to lysosome transport [GO:0008333]; exocytosis [GO:0006887]; protein transport [GO:0015031]; vesicle fusion [GO:0006906]	contractile vacuole [GO:0000331]; endoplasmic reticulum membrane [GO:0005789]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; lysosomal membrane [GO:0005765]; phagocytic vesicle membrane [GO:0030670]; SNARE complex [GO:0031201]; transport vesicle membrane [GO:0030658]	SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]	GO:0000149; GO:0000331; GO:0005484; GO:0005765; GO:0005768; GO:0005789; GO:0005794; GO:0006887; GO:0006906; GO:0008333; GO:0015031; GO:0016021; GO:0030658; GO:0030670; GO:0031201; GO:0031902	reviewed	Dictyostelium discoideum (Slime mold)	7	1	1	0	0	0	3	0	0	0	0	0	0	0	0
72	TRINITY_DN271649_c0_g1	9.19780024804431	2.37549423924929	10.5999805506321	0.00395210788567001	0.0268830195739531	Q99MN1	TRINITY_DN271649_c0_g1_i1	7.6e-108	Lysine--tRNA ligase (EC 2.7.7.-) (EC 6.1.1.6) (Lysyl-tRNA synthetase) (LysRS)	activation of MAPK activity [GO:0000187]; basophil activation involved in immune response [GO:0002276]; diadenosine tetraphosphate biosynthetic process [GO:0015966]; ERK1 and ERK2 cascade [GO:0070371]; lysyl-tRNA aminoacylation [GO:0006430]; negative regulation of cell population proliferation [GO:0008285]; positive regulation of cytokine production involved in inflammatory response [GO:1900017]; positive regulation of cytokine secretion involved in immune response [GO:0002741]; positive regulation of ERK1 and ERK2 cascade [GO:0070374]; positive regulation of macrophage activation [GO:0043032]; positive regulation of macrophage chemotaxis [GO:0010759]; positive regulation of metallopeptidase activity [GO:1905050]; positive regulation of p38MAPK cascade [GO:1900745]; positive regulation of transcription, DNA-templated [GO:0045893]; response to X-ray [GO:0010165]; tumor necrosis factor-mediated signaling pathway [GO:0033209]	aminoacyl-tRNA synthetase multienzyme complex [GO:0017101]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; extracellular space [GO:0005615]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasma membrane [GO:0005886]	amino acid binding [GO:0016597]; ATP adenylyltransferase activity [GO:0003877]; ATP binding [GO:0005524]; identical protein binding [GO:0042802]; lysine-tRNA ligase activity [GO:0004824]; protein homodimerization activity [GO:0042803]; scaffold protein binding [GO:0097110]; tRNA binding [GO:0000049]	GO:0000049; GO:0000187; GO:0002276; GO:0002741; GO:0003877; GO:0004824; GO:0005524; GO:0005615; GO:0005634; GO:0005737; GO:0005739; GO:0005829; GO:0005886; GO:0006430; GO:0008285; GO:0010165; GO:0010759; GO:0015966; GO:0016597; GO:0017101; GO:0033209; GO:0042802; GO:0042803; GO:0043032; GO:0045893; GO:0070371; GO:0070374; GO:0097110; GO:1900017; GO:1900745; GO:1905050	reviewed	Mus musculus (Mouse)	2	0	2	0	5	15	0	0	1	0	0	0	0	0	0
73	TRINITY_DN271662_c0_g1	-3.18261021180568	9.50624076317237	12.5479741322902	0.00173624413768962	0.013778655400383	O65660	TRINITY_DN271662_c0_g1_i1	3.1e-46	PLAT domain-containing protein 1 (AtPLAT1) (PLAT domain protein 1)	regulation of growth [GO:0040008]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]	chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]	catalase activity [GO:0004096]; heme binding [GO:0020037]	GO:0004096; GO:0005773; GO:0005774; GO:0005783; GO:0005886; GO:0009409; GO:0009414; GO:0009507; GO:0009535; GO:0009579; GO:0009651; GO:0010287; GO:0020037; GO:0040008	reviewed	Arabidopsis thaliana (Mouse-ear cress)	470	123	297	282	56	104	159	1362	1018	951	1264	1530	719	1565	783
74	TRINITY_DN271688_c0_g1	-4.80707301386134	5.20529891686498	9.84134276621696	0.00461717636154872	0.0302757644893926	P26307	TRINITY_DN271688_c0_g1_i2	1.4e-15	Regulatory protein viviparous-1	abscisic acid-activated signaling pathway [GO:0009738]; multicellular organism development [GO:0007275]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	DNA binding [GO:0003677]	GO:0003677; GO:0005634; GO:0005737; GO:0007275; GO:0009738	reviewed	Zea mays (Maize)	10	6	9	11	4	2	3	122	125	104	57	21	32	55	39
75	TRINITY_DN274001_c0_g1	21.3082863946522	7.8197416677977	142.466249277202	1.46473867786034e-10	4.92757196519322e-09	P79733	TRINITY_DN274001_c0_g1_i1	2.8e-122	Ribonucleoside-diphosphate reductase subunit M2 (EC 1.17.4.1) (Ribonucleotide reductase protein R2 class I) (Ribonucleotide reductase small chain) (Ribonucleotide reductase small subunit)	deoxyribonucleotide biosynthetic process [GO:0009263]; DNA replication [GO:0006260]	cytosol [GO:0005829]	metal ion binding [GO:0046872]; ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [GO:0004748]	GO:0004748; GO:0005829; GO:0006260; GO:0009263; GO:0046872	reviewed	Danio rerio (Zebrafish) (Brachydanio rerio)	380	317	50	597	416	320	150	0	0	0	2	0	0	0	0
76	TRINITY_DN274005_c0_g1	-5.05936101438168	4.75042795793046	8.41238836760395	0.00805697234921565	0.0471386189429536	Q5XET5	TRINITY_DN274005_c0_g1_i1	2.3e-42	Protein HESO1 (EC 2.7.7.52) (HEN1 suppressor 1) (RNA uridylyltransferase)	regulation of gene silencing by miRNA [GO:0060964]; RNA 3' uridylation [GO:0071076]	cytoplasm [GO:0005737]; nucleus [GO:0005634]; P-body [GO:0000932]	nucleotidyltransferase activity [GO:0016779]; RNA uridylyltransferase activity [GO:0050265]	GO:0000932; GO:0005634; GO:0005737; GO:0016779; GO:0050265; GO:0060964; GO:0071076	reviewed	Arabidopsis thaliana (Mouse-ear cress)	8	23	4	3	0	1	4	96	51	62	42	31	31	23	41
77	TRINITY_DN274054_c0_g1	18.1384228171548	5.84544237855506	80.1679599597598	1.93511191735029e-08	5.03291712957911e-07	Q94C49	TRINITY_DN274054_c0_g1_i1	6.7e-25	Probable protein S-acyltransferase 13 (EC 2.3.1.225) (Probable palmitoyltransferase At4g22750) (Zinc finger DHHC domain-containing protein At4g22750)		cytoplasmic vesicle membrane [GO:0030659]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	protein-cysteine S-palmitoyltransferase activity [GO:0019706]	GO:0005886; GO:0016021; GO:0019706; GO:0030659	reviewed	Arabidopsis thaliana (Mouse-ear cress)	77	126	59	87	81	89	34	0	0	0	0	0	0	1	0
78	TRINITY_DN274058_c0_g1	6.79386441551889	3.11273327740392	10.7591064600121	0.0032795583210806	0.0232270778117722	Q9SID8	TRINITY_DN274058_c0_g1_i1	2.5e-86	Ras-related protein RABH1d (AtRABH1d)	intracellular protein transport [GO:0006886]; intra-Golgi vesicle-mediated transport [GO:0006891]; Rab protein signal transduction [GO:0032482]; retrograde transport, endosome to Golgi [GO:0042147]; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum [GO:0006890]	cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; mitochondrion [GO:0005739]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]	GO:0000139; GO:0003924; GO:0005525; GO:0005739; GO:0005794; GO:0005829; GO:0006886; GO:0006890; GO:0006891; GO:0032482; GO:0042147	reviewed	Arabidopsis thaliana (Mouse-ear cress)	6	17	4	11	5	7	8	0	0	1	0	8	3	3	0
79	TRINITY_DN274570_c1_g1	-8.31244775333988	5.93941394371923	27.0889123489554	2.79983808860928e-05	0.000383429154170164	Q6ZD63	TRINITY_DN274570_c1_g1_i1	5.9e-144	Chromatin assembly factor 1 subunit FAS2 homolog (CAF-1 subunit FAS2 homolog) (CAF-1 p60 homolog) (Protein FASCIATA 2 homolog)	DNA recombination [GO:0006310]; DNA repair [GO:0006281]; nucleosome assembly [GO:0006334]	CAF-1 complex [GO:0033186]; nucleus [GO:0005634]	histone binding [GO:0042393]	GO:0005634; GO:0006281; GO:0006310; GO:0006334; GO:0033186; GO:0042393	reviewed	Oryza sativa subsp. japonica (Rice)	9	33	5	1	0	1	2	223	192	170	109	70	59	75	92
80	TRINITY_DN274635_c0_g1	17.5554204786408	5.54255778192172	66.3663597370911	8.69412781833779e-08	1.93585076242845e-06	Q12055	TRINITY_DN274635_c0_g1_i1	3.5e-31	Adenylate kinase isoenzyme 6 homolog FAP7 (AK6) (EC 2.7.4.3) (Dual activity adenylate kinase/ATPase) (AK/ATPase) (POS9-activating factor 7)	cellular response to oxidative stress [GO:0034599]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]	cytoplasm [GO:0005737]; cytoplasmic stress granule [GO:0010494]; nucleus [GO:0005634]	adenylate kinase activity [GO:0004017]; ATPase activity [GO:0016887]; ATP binding [GO:0005524]	GO:0000462; GO:0004017; GO:0005524; GO:0005634; GO:0005737; GO:0010494; GO:0016887; GO:0034599	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	65	69	48	71	73	67	38	0	0	0	1	0	0	0	0
81	TRINITY_DN274662_c0_g1	11.0800385113466	2.87504261534634	21.5942419336211	0.000154837549135684	0.00180158727283813	Q54C29	TRINITY_DN274662_c0_g1_i1	3.7e-36	General transcription factor IIH subunit 4 (TFIIH basal transcription factor complex subunit 4)	nucleotide-excision repair [GO:0006289]; phosphorylation of RNA polymerase II C-terminal domain [GO:0070816]; transcription by RNA polymerase II [GO:0006366]	transcription factor TFIIH core complex [GO:0000439]; transcription factor TFIIH holo complex [GO:0005675]	ATPase activator activity [GO:0001671]; double-stranded DNA binding [GO:0003690]	GO:0000439; GO:0001671; GO:0003690; GO:0005675; GO:0006289; GO:0006366; GO:0070816	reviewed	Dictyostelium discoideum (Slime mold)	18	8	15	2	5	1	4	0	0	0	1	0	0	0	0
82	TRINITY_DN274697_c0_g1	10.2891340967274	2.03818416596718	12.0417506869144	0.00292094083947198	0.0214225400430469	Q78PY7	TRINITY_DN274697_c0_g1_i3	4.3e-60	Staphylococcal nuclease domain-containing protein 1 (EC 3.1.31.1) (100 kDa coactivator) (p100 co-activator)	gene silencing by RNA [GO:0031047]; miRNA catabolic process [GO:0010587]; regulation of cell cycle process [GO:0010564]; RNA catabolic process [GO:0006401]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; dense body [GO:0097433]; melanosome [GO:0042470]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; RISC complex [GO:0016442]	endonuclease activity [GO:0004519]; endoribonuclease activity [GO:0004521]; nuclease activity [GO:0004518]; RISC complex binding [GO:1905172]; RNA binding [GO:0003723]	GO:0003723; GO:0004518; GO:0004519; GO:0004521; GO:0005634; GO:0005737; GO:0005739; GO:0005829; GO:0006401; GO:0010564; GO:0010587; GO:0016442; GO:0031047; GO:0042470; GO:0097433; GO:1905172	reviewed	Mus musculus (Mouse)	0	0	6	0	4	7	0	0	0	0	0	0	0	0	0
83	TRINITY_DN274731_c0_g1	-3.31574116909101	8.14908664653244	13.1732926977853	0.00140237302241844	0.0114823928687436	Q8LGS1	TRINITY_DN274731_c0_g1_i1	3.6e-06	Protein MARD1 (FCS-Like Zinc finger 9) (Mediator of ABA-regulated dormancy1) (Senescence-associated protein SAG102)	response to abscisic acid [GO:0009737]; response to glucose [GO:0009749]; response to mannose [GO:1905582]; response to sucrose [GO:0009744]; seed dormancy process [GO:0010162]	cytoplasmic stress granule [GO:0010494]; nucleus [GO:0005634]; P-body [GO:0000932]	kinase binding [GO:0019900]; metal ion binding [GO:0046872]	GO:0000932; GO:0005634; GO:0009737; GO:0009744; GO:0009749; GO:0010162; GO:0010494; GO:0019900; GO:0046872; GO:1905582	reviewed	Arabidopsis thaliana (Mouse-ear cress)	122	59	42	102	61	110	40	357	180	332	406	421	520	686	671
84	TRINITY_DN274735_c0_g1	-9.52457690938064	8.85708352297887	54.3153552841845	1.68666249485196e-07	3.43435554050448e-06	Q6JJ61	TRINITY_DN274735_c0_g1_i1	7e-62	50S ribosomal protein L9, chloroplastic (CL9)	translation [GO:0006412]	chloroplast [GO:0009507]; ribosome [GO:0005840]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005840; GO:0006412; GO:0009507; GO:0019843	reviewed	Ipomoea trifida (Morning glory)	65	10	16	19	2	5	22	1885	958	764	865	1281	290	967	508
85	TRINITY_DN274795_c0_g2	17.9112368652954	13.709153805063	125.895171976953	8.20559949520872e-11	2.82181449307455e-09	Q9FIA1	TRINITY_DN274795_c0_g2_i1	8.8e-57	GDSL esterase/lipase At5g55050 (EC 3.1.1.-) (Extracellular lipase At5g55050)	lipid catabolic process [GO:0016042]	extracellular region [GO:0005576]	lipase activity [GO:0016298]	GO:0005576; GO:0016042; GO:0016298	reviewed	Arabidopsis thaliana (Mouse-ear cress)	9760	10784	19836	16521	30598	5846	34761	18	2	15	21	425	453	106	11
86	TRINITY_DN274796_c0_g1	7.76192124688987	2.33962168870287	9.83452685389757	0.00462912157068568	0.0302899180999412	P93596	TRINITY_DN274796_c0_g1_i1	2.8e-70	Obtusifoliol 14-alpha demethylase (EC 1.14.14.154) (CYPLI) (Cytochrome P450 51) (Cytochrome P450-LIA1) (Fragment)	sterol biosynthetic process [GO:0016126]	membrane [GO:0016020]	heme binding [GO:0020037]; iron ion binding [GO:0005506]; methyltransferase activity [GO:0008168]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]	GO:0004497; GO:0005506; GO:0008168; GO:0016020; GO:0016126; GO:0016705; GO:0020037	reviewed	Triticum aestivum (Wheat)	8	11	7	0	0	2	3	0	0	0	1	0	0	0	1
87	TRINITY_DN274800_c0_g1	-3.73196874995519	8.81809709913959	22.9742849913392	7.7703911197909e-05	0.000981606551663381	A4FVR1	TRINITY_DN274800_c0_g1_i1	3.5e-15	GBF-interacting protein 1-like (Protein GIP1-like)		nucleus [GO:0005634]	unfolded protein binding [GO:0051082]	GO:0005634; GO:0051082	reviewed	Arabidopsis thaliana (Mouse-ear cress)	254	170	164	61	49	41	123	1601	1211	1072	601	385	493	802	454
88	TRINITY_DN274808_c0_g1	-6.85216108745489	3.66036618346836	10.3703038699295	0.00378571638118401	0.0260373159994767	A6LKY1	TRINITY_DN274808_c0_g1_i1	1.6e-08	GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) (GMP synthetase) (Glutamine amidotransferase)	glutamine metabolic process [GO:0006541]		ATP binding [GO:0005524]; GMP synthase (glutamine-hydrolyzing) activity [GO:0003922]; pyrophosphatase activity [GO:0016462]	GO:0003922; GO:0005524; GO:0006541; GO:0016462	reviewed	Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429)	2	1	1	0	3	0	0	43	35	31	37	12	2	8	8
89	TRINITY_DN274809_c0_g1	21.709249134594	7.12265422095082	163.25732930268	3.73951222150076e-10	1.10226574528999e-08	A6VU31	TRINITY_DN274809_c0_g1_i1	1.3e-16	tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase)	tRNA pseudouridine synthesis [GO:0031119]		RNA binding [GO:0003723]; tRNA pseudouridine synthase activity [GO:0106029]	GO:0003723; GO:0031119; GO:0106029	reviewed	Marinomonas sp. (strain MWYL1)	106	199	63	216	298	265	162	0	0	0	0	0	0	0	0
90	TRINITY_DN274823_c0_g1	21.3623301694363	12.023704238312	267.683172396512	3.56362748300579e-14	3.34225062421301e-12	O55044	TRINITY_DN274823_c0_g1_i2	1.4e-91	Glucose-6-phosphate 1-dehydrogenase (G6PD) (EC 1.1.1.49)	cellular response to oxidative stress [GO:0034599]; cholesterol biosynthetic process [GO:0006695]; erythrocyte maturation [GO:0043249]; glucose 6-phosphate metabolic process [GO:0051156]; glucose metabolic process [GO:0006006]; glutathione metabolic process [GO:0006749]; NADP metabolic process [GO:0006739]; negative regulation of protein glutathionylation [GO:0010734]; pentose biosynthetic process [GO:0019322]; pentose-phosphate shunt, oxidative branch [GO:0009051]; ribose phosphate biosynthetic process [GO:0046390]	cytoplasmic side of plasma membrane [GO:0009898]; cytosol [GO:0005829]	glucose-6-phosphate dehydrogenase activity [GO:0004345]; glucose binding [GO:0005536]; NADP binding [GO:0050661]; protein homodimerization activity [GO:0042803]	GO:0004345; GO:0005536; GO:0005829; GO:0006006; GO:0006695; GO:0006739; GO:0006749; GO:0009051; GO:0009898; GO:0010734; GO:0019322; GO:0034599; GO:0042803; GO:0043249; GO:0046390; GO:0050661; GO:0051156	reviewed	Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus)	5858	9559	3148	5953	7724	6290	3687	2	1	7	11	4	1	17	3
91	TRINITY_DN274831_c0_g1	11.4243324669739	2.45209733320607	13.0693094308709	0.00213202211497279	0.0164144488702507	O61199	TRINITY_DN274831_c0_g1_i1	1.1e-95	2-oxoglutarate dehydrogenase, mitochondrial (EC 1.2.4.2) (2-oxoglutarate dehydrogenase complex component E1) (OGDC-E1) (Alpha-ketoglutarate dehydrogenase)	generation of precursor metabolites and energy [GO:0006091]; glycolytic process [GO:0006096]; tricarboxylic acid cycle [GO:0006099]	mitochondrial matrix [GO:0005759]; mitochondrial membrane [GO:0031966]; mitochondrion [GO:0005739]; oxoglutarate dehydrogenase complex [GO:0045252]	oxoglutarate dehydrogenase (succinyl-transferring) activity [GO:0004591]; thiamine pyrophosphate binding [GO:0030976]	GO:0004591; GO:0005739; GO:0005759; GO:0006091; GO:0006096; GO:0006099; GO:0030976; GO:0031966; GO:0045252	reviewed	Caenorhabditis elegans	0	0	7	0	8	13	0	0	0	0	0	0	0	0	0
92	TRINITY_DN274840_c0_g2	22.75876139707	9.11685784159346	297.106079175099	1.16993216285774e-14	1.90575791791826e-12	Q839B2	TRINITY_DN274840_c0_g2_i1	1.1e-40	Hypoxanthine-guanine phosphoribosyltransferase (HGPRT) (HGPRTase) (EC 2.4.2.8)	IMP salvage [GO:0032264]; purine ribonucleoside salvage [GO:0006166]	cytoplasm [GO:0005737]	guanine phosphoribosyltransferase activity [GO:0052657]; hypoxanthine phosphoribosyltransferase activity [GO:0004422]; metal ion binding [GO:0046872]; nucleotide binding [GO:0000166]	GO:0000166; GO:0004422; GO:0005737; GO:0006166; GO:0032264; GO:0046872; GO:0052657	reviewed	Enterococcus faecalis (strain ATCC 700802 / V583)	514	332	275	1025	1289	1139	466	0	0	0	1	0	0	1	0
93	TRINITY_DN274865_c0_g1	-3.85471816009335	9.30247637341744	26.7131492542597	3.06187943297465e-05	0.000417181218558328	O94673	TRINITY_DN274865_c0_g1_i1	3e-19	Uncharacterized membrane protein C776.05	phosphatidylcholine biosynthetic process [GO:0006656]	endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]	glycero-3-phosphocholine acyltransferase activity [GO:0106158]	GO:0000139; GO:0005783; GO:0005789; GO:0005794; GO:0006656; GO:0016021; GO:0106158	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	304	323	199	104	38	99	134	1538	1271	1252	886	935	921	1040	909
94	TRINITY_DN276015_c0_g1	-7.32752992463083	6.2658106636069	27.4513767525157	2.57005804924798e-05	0.000353525762774333	Q9SR06	TRINITY_DN276015_c0_g1_i1	1.8e-20	Protein CLP1 homolog (CLP-like protein 3) (Protein CLP-SIMILAR PROTEIN 3)	flower development [GO:0009908]; mRNA polyadenylation [GO:0006378]; mRNA processing [GO:0006397]; phyllome development [GO:0048827]; tRNA splicing, via endonucleolytic cleavage and ligation [GO:0006388]; vegetative to reproductive phase transition of meristem [GO:0010228]	mRNA cleavage factor complex [GO:0005849]; nucleus [GO:0005634]	ATP binding [GO:0005524]	GO:0005524; GO:0005634; GO:0005849; GO:0006378; GO:0006388; GO:0006397; GO:0009908; GO:0010228; GO:0048827	reviewed	Arabidopsis thaliana (Mouse-ear cress)	16	12	16	1	3	3	3	263	227	205	183	72	48	161	82
95	TRINITY_DN276016_c0_g1	21.0588711515207	6.58817846739286	116.123203726339	5.02159607054573e-09	1.33981377916716e-07	Q9SSF1	TRINITY_DN276016_c0_g1_i1	1e-22	Small nuclear ribonucleoprotein SmD1a (AtSmD1-a)	posttranscriptional gene silencing by RNA [GO:0035194]; spliceosomal snRNP assembly [GO:0000387]	catalytic step 2 spliceosome [GO:0071013]; commitment complex [GO:0000243]; cytosol [GO:0005829]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; nucleus [GO:0005634]; pICln-Sm protein complex [GO:0034715]; SMN-Sm protein complex [GO:0034719]; U12-type spliceosomal complex [GO:0005689]; U1 snRNP [GO:0005685]; U2 snRNP [GO:0005686]; U4 snRNP [GO:0005687]; U5 snRNP [GO:0005682]; vacuolar membrane [GO:0005774]	RNA binding [GO:0003723]	GO:0000243; GO:0000387; GO:0003723; GO:0005634; GO:0005682; GO:0005685; GO:0005686; GO:0005687; GO:0005689; GO:0005730; GO:0005774; GO:0005829; GO:0016607; GO:0034715; GO:0034719; GO:0035194; GO:0071013	reviewed	Arabidopsis thaliana (Mouse-ear cress)	118	106	112	139	116	179	79	0	0	0	0	0	0	0	0
96	TRINITY_DN276022_c0_g1	21.9627207870477	7.34589125668947	175.193972565112	2.16008547503899e-10	7.03733110025859e-09	Q54EW1	TRINITY_DN276022_c0_g1_i1	1.3e-89	Serine hydroxymethyltransferase 2 (SHMT 2) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 2) (Serine methylase 2)	cellular response to tetrahydrofolate [GO:1904482]; folic acid metabolic process [GO:0046655]; glycine biosynthetic process from serine [GO:0019264]; glycine metabolic process [GO:0006544]; L-serine catabolic process [GO:0006565]; one-carbon metabolic process [GO:0006730]; tetrahydrofolate interconversion [GO:0035999]; tetrahydrofolate metabolic process [GO:0046653]	mitochondrial matrix [GO:0005759]	amino acid binding [GO:0016597]; cobalt ion binding [GO:0050897]; glycine hydroxymethyltransferase activity [GO:0004372]; pyridoxal phosphate binding [GO:0030170]; serine binding [GO:0070905]; zinc ion binding [GO:0008270]	GO:0004372; GO:0005759; GO:0006544; GO:0006565; GO:0006730; GO:0008270; GO:0016597; GO:0019264; GO:0030170; GO:0035999; GO:0046653; GO:0046655; GO:0050897; GO:0070905; GO:1904482	reviewed	Dictyostelium discoideum (Slime mold)	142	177	39	391	426	245	165	0	0	0	0	0	0	0	0
97	TRINITY_DN276025_c0_g1	21.3800510316547	9.2188210720157	282.740509404153	1.98838336144278e-14	2.45512742858048e-12	O18404	TRINITY_DN276025_c0_g1_i1	1.2e-52	3-hydroxyacyl-CoA dehydrogenase type-2 (EC 1.1.1.35) (17-beta-hydroxysteroid dehydrogenase 10) (17-beta-HSD 10) (EC 1.1.1.51) (3-hydroxy-2-methylbutyryl-CoA dehydrogenase) (EC 1.1.1.178) (3-hydroxyacyl-CoA dehydrogenase type II) (Mitochondrial ribonuclease P protein 2) (Mitochondrial RNase P protein 2) (Scully protein) (Type II HADH)	acyl-CoA metabolic process [GO:0006637]; androgen metabolic process [GO:0008209]; ecdysone metabolic process [GO:0008205]; estrogen metabolic process [GO:0008210]; fatty acid metabolic process [GO:0006631]; mitochondrial tRNA processing [GO:0090646]; RNA phosphodiester bond hydrolysis, endonucleolytic [GO:0090502]; steroid metabolic process [GO:0008202]	cytosol [GO:0005829]; mitochondrial ribonuclease P complex [GO:0030678]; mitochondrion [GO:0005739]	3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity [GO:0047015]; 3-hydroxyacyl-CoA dehydrogenase activity [GO:0003857]; 7-beta-hydroxysteroid dehydrogenase (NADP+) activity [GO:0047022]; acetoacetyl-CoA reductase activity [GO:0018454]; dihydrotestosterone 17-beta-dehydrogenase activity [GO:0035410]; estradiol 17-beta-dehydrogenase activity [GO:0004303]; steroid dehydrogenase activity [GO:0016229]; testosterone dehydrogenase (NAD+) activity [GO:0047035]; testosterone dehydrogenase [NAD(P)] activity [GO:0030283]	GO:0003857; GO:0004303; GO:0005739; GO:0005829; GO:0006631; GO:0006637; GO:0008202; GO:0008205; GO:0008209; GO:0008210; GO:0016229; GO:0018454; GO:0030283; GO:0030678; GO:0035410; GO:0047015; GO:0047022; GO:0047035; GO:0090502; GO:0090646	reviewed	Drosophila melanogaster (Fruit fly)	1343	1839	1041	525	516	604	330	2	0	1	4	0	0	0	1
98	TRINITY_DN276063_c0_g1	22.3439652967885	8.91797348758866	223.231349148673	2.42619996279498e-13	1.56439351767718e-11	Q5ZMQ9	TRINITY_DN276063_c0_g1_i1	1.3e-13	Peroxisomal targeting signal 1 receptor (PTS1 receptor) (PTS1R) (PTS1-BP) (Peroxin-5) (Peroxisomal C-terminal targeting signal import receptor) (Peroxisome receptor 1)	protein import into peroxisome matrix, docking [GO:0016560]	cytosol [GO:0005829]; peroxisomal membrane [GO:0005778]	peroxisome matrix targeting signal-1 binding [GO:0005052]	GO:0005052; GO:0005778; GO:0005829; GO:0016560	reviewed	Gallus gallus (Chicken)	950	488	1519	299	403	477	209	2	0	0	0	0	0	1	0
99	TRINITY_DN276081_c0_g1	7.13714953593382	1.44026510776788	10.3636462889218	0.00502497875460433	0.032000636307614	Q47UW0	TRINITY_DN276081_c0_g1_i1	5.4e-86	DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (EC 2.7.7.6) (RNA polymerase subunit beta') (Transcriptase subunit beta')	transcription, DNA-templated [GO:0006351]		DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]	GO:0003677; GO:0003899; GO:0006351	reviewed	Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)	2	1	0	0	0	2	1	0	0	0	0	0	0	0	0
100	TRINITY_DN276081_c0_g2	8.19683359108232	1.7763699916678	10.3667825030133	0.00501970780488066	0.032000636307614	Q47UW0	TRINITY_DN276081_c0_g2_i1	4.3e-107	DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (EC 2.7.7.6) (RNA polymerase subunit beta') (Transcriptase subunit beta')	transcription, DNA-templated [GO:0006351]		DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]	GO:0003677; GO:0003899; GO:0006351	reviewed	Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)	0	1	1	0	0	5	4	0	0	0	0	0	0	0	0
101	TRINITY_DN276264_c0_g1	22.4805895765515	10.3812772280744	275.49137511459	2.62355572823413e-14	2.70663499296154e-12	Q5XHZ0	TRINITY_DN276264_c0_g1_i1	2.6e-119	Heat shock protein 75 kDa, mitochondrial (HSP 75) (TNFR-associated protein 1) (Tumor necrosis factor type 1 receptor-associated protein) (TRAP-1)	negative regulation of cellular respiration [GO:1901856]; negative regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide [GO:1903751]; protein folding [GO:0006457]; translational attenuation [GO:0009386]	mitochondrial inner membrane [GO:0005743]; mitochondrial intermembrane space [GO:0005758]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; nucleoplasm [GO:0005654]	ATP binding [GO:0005524]; protein kinase binding [GO:0019901]; RNA binding [GO:0003723]; unfolded protein binding [GO:0051082]	GO:0003723; GO:0005524; GO:0005654; GO:0005739; GO:0005743; GO:0005758; GO:0005759; GO:0006457; GO:0009386; GO:0019901; GO:0051082; GO:1901856; GO:1903751	reviewed	Rattus norvegicus (Rat)	2564	2880	4755	428	966	727	662	3	0	3	7	0	0	0	1
102	TRINITY_DN276264_c0_g3	21.5937156593725	11.329075189546	357.011276289837	1.61383966732196e-15	8.15188158761435e-13	P0CH36	TRINITY_DN276264_c0_g3_i1	1.7e-84	NADP-dependent alcohol dehydrogenase C 1 (Ms-ADHC 1) (EC 1.1.1.2)			alcohol dehydrogenase (NADP+) activity [GO:0008106]; zinc ion binding [GO:0008270]	GO:0008106; GO:0008270	reviewed	Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)	4606	5134	3443	2723	3817	3517	2082	3	1	2	9	2	3	6	1
103	TRINITY_DN276293_c0_g1	-11.9164848682761	2.69905811648833	19.4687511169794	0.00033487780842088	0.00344364462250325	P09444	TRINITY_DN276293_c0_g1_i1	1.8e-67	Late embryogenesis abundant protein D-34 (LEA D-34)					reviewed	Gossypium hirsutum (Upland cotton) (Gossypium mexicanum)	0	0	0	0	0	0	0	15	15	17	3	8	4	10	5
104	TRINITY_DN276293_c0_g2	-4.41117161587885	6.67688100633626	11.4022907048229	0.00259753587012898	0.0194187766136454	Q9LJ97	TRINITY_DN276293_c0_g2_i1	1e-21	Late embryogenesis abundant protein 31 (LEA 31) (Protein RESPONSIVE TO ABSCISIC ACID 28) (AtRAB28)	cellular ion homeostasis [GO:0006873]; response to lithium ion [GO:0010226]; seed germination [GO:0009845]	cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]		GO:0005634; GO:0005730; GO:0005829; GO:0006873; GO:0009845; GO:0010226	reviewed	Arabidopsis thaliana (Mouse-ear cress)	31	3	25	14	29	18	21	186	183	214	69	196	124	150	259
105	TRINITY_DN276409_c0_g1	12.6957139742073	3.10791791452393	14.6759135189892	0.0013340429054778	0.0110990935281016	P00125	TRINITY_DN276409_c0_g1_i1	1e-74	Cytochrome c1, heme protein, mitochondrial (Complex III subunit 4) (Complex III subunit IV) (Cytochrome b-c1 complex subunit 4) (Ubiquinol-cytochrome-c reductase complex cytochrome c1 subunit) (Cytochrome c-1)	mitochondrial ATP synthesis coupled proton transport [GO:0042776]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122]	integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739]	electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity [GO:0045153]; heme binding [GO:0020037]; metal ion binding [GO:0046872]	GO:0005739; GO:0005743; GO:0005750; GO:0006122; GO:0016021; GO:0020037; GO:0042776; GO:0045153; GO:0046872	reviewed	Bos taurus (Bovine)	0	0	8	0	18	27	0	0	0	0	0	0	0	0	0
106	TRINITY_DN276418_c0_g1	10.2695681445767	2.37262823734835	14.0133848999596	0.00161330175960385	0.0129692699895426	Q3IJK2	TRINITY_DN276418_c0_g1_i1	2.5e-86	30S ribosomal protein S5	translation [GO:0006412]	small ribosomal subunit [GO:0015935]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0006412; GO:0015935; GO:0019843	reviewed	Pseudoalteromonas haloplanktis (strain TAC 125)	0	4	1	0	1	14	5	0	0	0	0	0	0	0	0
107	TRINITY_DN276445_c0_g1	-13.0539129024187	3.39476385014842	24.0956590025048	0.000112609820804527	0.00136143513824223	Q9M8M3	TRINITY_DN276445_c0_g1_i1	5e-85	Pentatricopeptide repeat-containing protein At1g80550, mitochondrial		mitochondrion [GO:0005739]		GO:0005739	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	0	0	0	0	0	45	30	38	23	8	2	5	5
108	TRINITY_DN276539_c0_g1	3.68857052534773	8.9084011160618	20.8998775758251	0.000134977255520651	0.00160059235952649	Q9SPK4	TRINITY_DN276539_c0_g1_i1	6.1e-66	Phosphoenolpyruvate carboxylase kinase 1 (AtPPCK1) (EC 2.7.11.1)	abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; response to cycloheximide [GO:0046898]; response to light stimulus [GO:0009416]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0004683; GO:0005516; GO:0005524; GO:0005634; GO:0005737; GO:0009416; GO:0009738; GO:0009931; GO:0018105; GO:0035556; GO:0046777; GO:0046898	reviewed	Arabidopsis thaliana (Mouse-ear cress)	100	249	103	235	847	1006	887	427	201	138	111	110	111	93	142
109	TRINITY_DN276554_c0_g1	17.0116485944408	4.63494388845045	55.3342307561233	9.57417639159406e-07	1.7328699375429e-05	F4JRF4	TRINITY_DN276554_c0_g1_i1	2.1e-60	Adenine DNA glycosylase (EC 3.2.2.31) (MutY homolog) (AtMYH)	base-excision repair [GO:0006284]; DNA repair [GO:0006281]; mismatch repair [GO:0006298]	nucleus [GO:0005634]	4 iron, 4 sulfur cluster binding [GO:0051539]; 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity [GO:0034039]; adenine/guanine mispair binding [GO:0035485]; metal ion binding [GO:0046872]; oxidized purine DNA binding [GO:0032357]; purine-specific mismatch base pair DNA N-glycosylase activity [GO:0000701]	GO:0000701; GO:0005634; GO:0006281; GO:0006284; GO:0006298; GO:0032357; GO:0034039; GO:0035485; GO:0046872; GO:0051539	reviewed	Arabidopsis thaliana (Mouse-ear cress)	30	31	26	34	45	35	20	0	0	0	0	0	0	0	0
110	TRINITY_DN276572_c0_g1	-9.17474609203995	2.01631103018106	8.987571510932	0.00770914027354237	0.0455142996671233	Q6PDQ2	TRINITY_DN276572_c0_g1_i1	1.7e-11	Chromodomain-helicase-DNA-binding protein 4 (CHD-4) (EC 3.6.4.12)	chromatin organization [GO:0006325]; negative regulation of transcription by RNA polymerase II [GO:0000122]; terminal button organization [GO:0072553]	centrosome [GO:0005813]; cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; NuRD complex [GO:0016581]; protein-containing complex [GO:0032991]; protein-DNA complex [GO:0032993]	ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; histone deacetylase binding [GO:0042826]; metal ion binding [GO:0046872]; RNA polymerase II repressing transcription factor binding [GO:0001103]; transcription factor binding [GO:0008134]	GO:0000122; GO:0001103; GO:0003677; GO:0004386; GO:0005524; GO:0005634; GO:0005654; GO:0005737; GO:0005813; GO:0006325; GO:0008134; GO:0016581; GO:0032991; GO:0032993; GO:0042826; GO:0046872; GO:0072553	reviewed	Mus musculus (Mouse)	0	0	0	0	0	0	0	21	0	10	1	0	6	2	0
111	TRINITY_DN276582_c0_g1	7.87053673341779	3.11662310138051	9.99229783895737	0.00436111041667487	0.0289028623974491	Q963B7	TRINITY_DN276582_c0_g1_i1	1.4e-55	60S ribosomal protein L9	translation [GO:0006412]	ribosome [GO:0005840]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005840; GO:0006412; GO:0019843	reviewed	Spodoptera frugiperda (Fall armyworm)	16	4	3	7	6	17	0	1	0	0	0	6	0	0	1
112	TRINITY_DN276586_c0_g1	-6.87167014720099	8.18029979742262	38.6985373472069	2.38165015160911e-06	4.14112765125292e-05	Q8GUI4	TRINITY_DN276586_c0_g1_i1	2.8e-78	Uncharacterized GPI-anchored protein At1g61900		anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]		GO:0005886; GO:0009506; GO:0031225; GO:0046658	reviewed	Arabidopsis thaliana (Mouse-ear cress)	100	23	29	21	3	20	12	1111	836	861	533	324	302	482	352
113	TRINITY_DN276607_c0_g1	20.4166006849997	6.83803402273126	130.178361550308	3.23630642576672e-10	9.72462950266795e-09	Q08DH3	TRINITY_DN276607_c0_g1_i1	7.3e-31	Probable tRNA methyltransferase 9B (Probable tRNA methyltransferase 9-like protein) (EC 2.1.1.-)	tRNA wobble uridine modification [GO:0002098]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	2-oxoglutarate-dependent dioxygenase activity [GO:0016706]; tRNA (uracil) methyltransferase activity [GO:0016300]; tRNA binding [GO:0000049]	GO:0000049; GO:0002098; GO:0005634; GO:0005737; GO:0016300; GO:0016706	reviewed	Bos taurus (Bovine)	158	293	176	140	173	129	87	0	1	0	0	0	0	0	0
114	TRINITY_DN276631_c0_g2	21.8887860095962	7.6593413522328	197.880673171002	7.62997988541918e-12	2.95184846817154e-10	P97501	TRINITY_DN276631_c0_g2_i1	8.4e-49	Dimethylaniline monooxygenase [N-oxide-forming] 3 (EC 1.14.13.8) (EC 1.14.14.73) (Dimethylaniline oxidase 3) (Hepatic flavin-containing monooxygenase 3) (FMO 3) (Trimethylamine monooxygenase) (EC 1.14.13.148)	drug metabolic process [GO:0017144]	endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]	amino acid binding [GO:0016597]; flavin adenine dinucleotide binding [GO:0050660]; monooxygenase activity [GO:0004497]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; trimethylamine monooxygenase activity [GO:0034899]	GO:0004497; GO:0004499; GO:0005789; GO:0016021; GO:0016597; GO:0017144; GO:0034899; GO:0043231; GO:0050660; GO:0050661	reviewed	Mus musculus (Mouse)	448	550	229	255	248	247	105	0	0	0	0	0	0	1	0
115	TRINITY_DN276843_c0_g1	-2.91200719881568	11.0482724024478	11.7940306766049	0.00225934976118672	0.017351581912836	P26360	TRINITY_DN276843_c0_g1_i1	6.3e-29	ATP synthase subunit gamma, mitochondrial (F-ATPase gamma subunit)	ATP synthesis coupled proton transport [GO:0015986]	mitochondrial inner membrane [GO:0005743]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]	proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]	GO:0005743; GO:0015986; GO:0045261; GO:0046933	reviewed	Ipomoea batatas (Sweet potato) (Convolvulus batatas)	994	844	996	367	192	407	939	6266	3619	2885	3605	3771	1593	3571	2000
116	TRINITY_DN276910_c0_g1	16.7587773330096	4.45277077518028	50.9436041703651	1.6458307940513e-06	2.91076931862216e-05	Q0VD24	TRINITY_DN276910_c0_g1_i1	2.4e-27	Histone-lysine N-methyltransferase SETMAR (EC 2.1.1.43) (SET domain and mariner transposase fusion protein homolog)	histone H3-K36 methylation [GO:0010452]; histone H3-K4 methylation [GO:0051568]	chromosome [GO:0005694]; nucleus [GO:0005634]	histone methyltransferase activity (H3-K36 specific) [GO:0046975]; histone methyltransferase activity (H3-K4 specific) [GO:0042800]; zinc ion binding [GO:0008270]	GO:0005634; GO:0005694; GO:0008270; GO:0010452; GO:0042800; GO:0046975; GO:0051568	reviewed	Bos taurus (Bovine)	36	50	36	31	26	21	6	0	0	0	0	0	0	0	0
117	TRINITY_DN276910_c0_g2	20.3651308453541	6.91318576659881	134.039658217918	2.50550073042654e-10	7.76960632868147e-09	Q0VD24	TRINITY_DN276910_c0_g2_i1	1.6e-27	Histone-lysine N-methyltransferase SETMAR (EC 2.1.1.43) (SET domain and mariner transposase fusion protein homolog)	histone H3-K36 methylation [GO:0010452]; histone H3-K4 methylation [GO:0051568]	chromosome [GO:0005694]; nucleus [GO:0005634]	histone methyltransferase activity (H3-K36 specific) [GO:0046975]; histone methyltransferase activity (H3-K4 specific) [GO:0042800]; zinc ion binding [GO:0008270]	GO:0005634; GO:0005694; GO:0008270; GO:0010452; GO:0042800; GO:0046975; GO:0051568	reviewed	Bos taurus (Bovine)	186	240	168	174	154	165	77	0	0	0	0	0	0	1	0
118	TRINITY_DN276935_c0_g1	8.59073759843635	3.02334634709787	14.0662088792869	0.00104127401578647	0.00905264909791888	P0A356	TRINITY_DN276935_c0_g1_i1	6.6e-17	Cold shock-like protein CspLA (CspL)		cytoplasm [GO:0005737]	DNA binding [GO:0003677]	GO:0003677; GO:0005737	reviewed	Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)	29	7	7	3	1	5	5	2	0	0	0	0	1	2	0
119	TRINITY_DN276943_c0_g1	12.0273325946599	3.05480846917729	13.8296006564787	0.00170200410191261	0.013541652173315	Q01085	TRINITY_DN276943_c0_g1_i1	4.8e-61	Nucleolysin TIAR (TIA-1-related protein)	apoptotic process [GO:0006915]; defense response [GO:0006952]; fibroblast growth factor receptor signaling pathway [GO:0008543]; germ cell development [GO:0007281]; positive regulation of cell population proliferation [GO:0008284]; regulation of transcription by RNA polymerase II [GO:0006357]; stem cell division [GO:0017145]	cytoplasm [GO:0005737]; cytoplasmic stress granule [GO:0010494]; lysosome [GO:0005764]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]	DNA binding [GO:0003677]; mRNA 3'-UTR AU-rich region binding [GO:0035925]; RNA binding [GO:0003723]	GO:0003677; GO:0003723; GO:0005634; GO:0005654; GO:0005737; GO:0005764; GO:0006357; GO:0006915; GO:0006952; GO:0007281; GO:0008284; GO:0008543; GO:0010494; GO:0017145; GO:0035925	reviewed	Homo sapiens (Human)	0	0	5	0	19	27	0	0	0	0	0	0	0	0	0
120	TRINITY_DN276974_c0_g1	17.1449858045241	5.85063577444203	72.8802246976643	4.15915767637964e-08	9.82640687663739e-07	Q9CA40	TRINITY_DN276974_c0_g1_i1	1e-07	Nudix hydrolase 1 (AtNUDT1) (7,8-dihydro-8-oxoguanine-triphosphatase) (8-oxo-dGTP diphosphatase) (8-oxo-dGTPase) (EC 3.6.1.55) (Dihydroneopterin triphosphate diphosphatase) (EC 3.6.1.67) (Dihydroneopterin triphosphate pyrophosphohydrolase) (DHNTP pyrophosphohydrolase) (NADH pyrophosphatase) (EC 3.6.1.22)	cellular response to DNA damage stimulus [GO:0006974]; dGTP catabolic process [GO:0006203]	cytosol [GO:0005829]	8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity [GO:0035539]; 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity [GO:0008413]; dihydroneopterin triphosphate pyrophosphohydrolase activity [GO:0019177]; metal ion binding [GO:0046872]; NAD+ diphosphatase activity [GO:0000210]	GO:0000210; GO:0005829; GO:0006203; GO:0006974; GO:0008413; GO:0019177; GO:0035539; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)	91	67	28	95	77	103	56	0	0	0	0	0	0	1	1
121	TRINITY_DN276983_c0_g1	-8.39360273800739	7.97739444341348	56.2782787378194	1.25794193843357e-07	2.61297335533685e-06	F4JVI3	TRINITY_DN276983_c0_g1_i1	8.5e-76	Transcription termination factor MTERF5, chloroplastic (Mitochondrial transcription termination factor 5) (Protein MTERF DEFECTIVE IN ARABIDOPSIS 1)	chloroplast organization [GO:0009658]; developmental process [GO:0032502]; DNA-templated transcription, termination [GO:0006353]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]	chloroplast [GO:0009507]	double-stranded DNA binding [GO:0003690]	GO:0003690; GO:0006353; GO:0006355; GO:0006970; GO:0009507; GO:0009651; GO:0009658; GO:0009737; GO:0032502	reviewed	Arabidopsis thaliana (Mouse-ear cress)	50	31	19	6	2	7	12	1229	553	519	533	410	211	536	242
122	TRINITY_DN276992_c0_g1	20.2461614683454	6.94659039833252	134.009971841113	2.51037361185185e-10	7.76960632868147e-09	Q9VHS8	TRINITY_DN276992_c0_g1_i1	4.4e-140	Eukaryotic initiation factor 4A-III (eIF-4A-III) (eIF4A-III) (EC 3.6.4.13)	chromatin organization [GO:0006325]; exon-exon junction complex assembly [GO:1903040]; mRNA splicing, via spliceosome [GO:0000398]; mRNA transport [GO:0051028]; pole plasm oskar mRNA localization [GO:0045451]; positive regulation of gene expression [GO:0010628]; RNA splicing [GO:0008380]	catalytic step 2 spliceosome [GO:0071013]; nucleus [GO:0005634]; pole plasm [GO:0045495]; precatalytic spliceosome [GO:0071011]	ATP binding [GO:0005524]; helicase activity [GO:0004386]; RNA binding [GO:0003723]	GO:0000398; GO:0003723; GO:0004386; GO:0005524; GO:0005634; GO:0006325; GO:0008380; GO:0010628; GO:0045451; GO:0045495; GO:0051028; GO:0071011; GO:0071013; GO:1903040	reviewed	Drosophila melanogaster (Fruit fly)	193	167	86	159	248	209	106	0	0	0	0	0	0	1	0
123	TRINITY_DN277000_c0_g1	-5.6642754665351	6.97365236048429	20.529737498617	0.000149392927235394	0.00174479664073035	Q94K73	TRINITY_DN277000_c0_g1_i1	1.4e-71	Phenylalanine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.20) (Phenylalanyl-tRNA synthetase) (PheRS)	phenylalanyl-tRNA aminoacylation [GO:0006432]	chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; membrane [GO:0016020]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]	ATP binding [GO:0005524]; phenylalanine-tRNA ligase activity [GO:0004826]; tRNA binding [GO:0000049]	GO:0000049; GO:0004826; GO:0005524; GO:0005737; GO:0005739; GO:0005759; GO:0006432; GO:0009507; GO:0009570; GO:0016020	reviewed	Arabidopsis thaliana (Mouse-ear cress)	34	46	17	21	5	5	17	486	311	247	250	288	60	181	77
124	TRINITY_DN277003_c0_g1	-2.62213296679115	9.36625815613197	14.8952388933025	0.000795506440447797	0.0072414483328998	Q8W4A5	TRINITY_DN277003_c0_g1_i1	3.4e-146	APO protein 2, chloroplastic (Accumulation of photosystem I protein 2) (Protein EMBRYO DEFECTIVE 1629)		chloroplast [GO:0009507]	RNA binding [GO:0003723]	GO:0003723; GO:0009507	reviewed	Arabidopsis thaliana (Mouse-ear cress)	355	358	400	156	113	113	200	1756	1210	1445	656	755	834	1040	855
125	TRINITY_DN277043_c0_g1	19.1542953228374	8.45151376495427	162.686023025968	6.35228718265759e-12	2.48864921902851e-10	P40991	TRINITY_DN277043_c0_g1_i1	1.1e-93	25S rRNA (cytosine(2870)-C(5))-methyltransferase (EC 2.1.1.310) (Nucleolar protein 2)	assembly of large subunit precursor of preribosome [GO:1902626]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; ribosomal large subunit biogenesis [GO:0042273]; rRNA base methylation [GO:0070475]; rRNA methylation [GO:0031167]	nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; preribosome, large subunit precursor [GO:0030687]	RNA binding [GO:0003723]; rRNA (cytosine-C5-)-methyltransferase activity [GO:0009383]	GO:0000463; GO:0003723; GO:0005634; GO:0005654; GO:0005730; GO:0009383; GO:0030687; GO:0031167; GO:0042273; GO:0070475; GO:1902626	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	235	226	101	542	934	790	342	0	1	0	4	1	0	0	0
126	TRINITY_DN277043_c0_g2	7.12048424053398	1.43667782041483	11.4784995455355	0.00348996087863053	0.0242184504918419	P40991	TRINITY_DN277043_c0_g2_i1	7e-25	25S rRNA (cytosine(2870)-C(5))-methyltransferase (EC 2.1.1.310) (Nucleolar protein 2)	assembly of large subunit precursor of preribosome [GO:1902626]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; ribosomal large subunit biogenesis [GO:0042273]; rRNA base methylation [GO:0070475]; rRNA methylation [GO:0031167]	nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; preribosome, large subunit precursor [GO:0030687]	RNA binding [GO:0003723]; rRNA (cytosine-C5-)-methyltransferase activity [GO:0009383]	GO:0000463; GO:0003723; GO:0005634; GO:0005654; GO:0005730; GO:0009383; GO:0030687; GO:0031167; GO:0042273; GO:0070475; GO:1902626	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	0	5	0	1	2	0	1	0	0	0	0	0	0	0	0
127	TRINITY_DN277047_c0_g1	-12.0469405422942	3.12324785869669	19.4684040498399	0.000334906956825033	0.00344364462250325	Q05627	TRINITY_DN277047_c0_g1_i1	3.8e-72	Uncharacterized protein Cbei_0202 (ORF1)					reviewed	Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium acetobutylicum)	0	0	0	0	0	0	0	39	44	27	5	2	1	6	4
128	TRINITY_DN277053_c0_g1	-9.79598170075459	8.8808198554677	58.7579557669783	8.7758458270548e-08	1.94008877390961e-06	Q9FLV9	TRINITY_DN277053_c0_g1_i1	8.4e-19	S-type anion channel SLAH3 (SLAC1-homolog protein 3)	cellular ion homeostasis [GO:0006873]; chloride transport [GO:0006821]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	voltage-gated anion channel activity [GO:0008308]	GO:0005886; GO:0006821; GO:0006873; GO:0008308; GO:0009414; GO:0009651; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)	40	5	5	44	7	13	12	2281	725	508	346	657	636	1443	1307
129	TRINITY_DN277209_c0_g1	10.0882191305347	2.90539245994882	13.5709268965098	0.00146833679666253	0.0119469684508099	P37891	TRINITY_DN277209_c0_g1_i3	1.9e-65	Serine carboxypeptidase 3 (EC 3.4.16.5) (Serine carboxypeptidase III)	proteolysis involved in cellular protein catabolic process [GO:0051603]	vacuole [GO:0005773]	serine-type carboxypeptidase activity [GO:0004185]	GO:0004185; GO:0005773; GO:0051603	reviewed	Oryza sativa subsp. japonica (Rice)	6	1	35	0	0	2	1	0	0	1	0	0	0	0	0
130	TRINITY_DN277215_c0_g1	20.6936657690256	9.34544600932653	330.72091884677	3.69267488308422e-15	1.14288287631456e-12	Q9A9I6	TRINITY_DN277215_c0_g1_i1	5.7e-49	Peptide methionine sulfoxide reductase MsrA 1 (Protein-methionine-S-oxide reductase 1) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase 1) (Peptide Met(O) reductase 1)	cellular protein modification process [GO:0006464]		peptide-methionine (S)-S-oxide reductase activity [GO:0008113]	GO:0006464; GO:0008113	reviewed	Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus)	1483	1459	1752	511	464	465	303	2	0	1	1	1	0	2	1
131	TRINITY_DN277252_c0_g1	11.2508215587905	2.36803934037269	12.8395929605688	0.00228505445421542	0.0175055533064275	Q99LE6	TRINITY_DN277252_c0_g1_i2	2.2e-40	ATP-binding cassette sub-family F member 2		mitochondrion [GO:0005739]	ATPase activity [GO:0016887]; ATP binding [GO:0005524]	GO:0005524; GO:0005739; GO:0016887	reviewed	Mus musculus (Mouse)	0	0	7	0	6	12	0	0	0	0	0	0	0	0	0
132	TRINITY_DN277292_c0_g1	-4.65799323388791	9.24410369098314	28.2625021293917	2.12680682703435e-05	0.000297849191387843	Q8GZ79	TRINITY_DN277292_c0_g1_i2	1.9e-68	Protein TIC 20-I, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 20-I) (AtTIC20-I)	protein import into chloroplast stroma [GO:0045037]	chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]	protein transmembrane transporter activity [GO:0008320]	GO:0008320; GO:0009706; GO:0016021; GO:0045037	reviewed	Arabidopsis thaliana (Mouse-ear cress)	304	129	201	79	20	61	84	2057	1267	1380	1164	548	505	1312	857
133	TRINITY_DN277371_c0_g1	20.6621098426618	9.87080656693431	230.910244121526	1.70114759341838e-13	1.1445764786152e-11	E9F8M3	TRINITY_DN277371_c0_g1_i1	1.6e-81	Reducing polyketide synthase swnK (EC 2.3.1.-) (Swainsonine biosynthesis gene cluster protein K)			ligase activity [GO:0016874]; methyltransferase activity [GO:0008168]; oxidoreductase activity [GO:0016491]; phosphopantetheine binding [GO:0031177]	GO:0008168; GO:0016491; GO:0016874; GO:0031177	reviewed	Metarhizium robertsii (strain ARSEF 23 / ATCC MYA-3075) (Metarhizium anisopliae (strain ARSEF 23))	2275	1365	1529	556	1105	859	1277	0	0	1	5	1	2	4	0
134	TRINITY_DN277373_c0_g1	11.0641900705276	2.85535642223525	12.440387777361	0.00258130441209609	0.0193441577613497	Q9U1Y5	TRINITY_DN277373_c0_g1_i1	1.1e-35	Serine/threonine-protein kinase chk-2 (EC 2.7.11.1) (Ce-cds-1) (Ce-chk-2)	cell division [GO:0051301]; DNA repair [GO:0006281]; mitotic DNA damage checkpoint [GO:0044773]; positive regulation of histone H3-K9 methylation [GO:0051574]; signal transduction in response to DNA damage [GO:0042770]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005524; GO:0005634; GO:0005737; GO:0006281; GO:0042770; GO:0044773; GO:0046872; GO:0051301; GO:0051574	reviewed	Caenorhabditis elegans	0	0	3	0	19	22	0	0	0	0	0	0	0	0	0
135	TRINITY_DN277393_c0_g1	23.9727415901808	8.35890857345442	256.549096057431	1.05610068387191e-11	4.03534767479451e-10	Q53P98	TRINITY_DN277393_c0_g1_i1	2.9e-24	Signal peptide peptidase-like 2 (OsSPPL2) (EC 3.4.23.-)	membrane protein proteolysis [GO:0033619]	endosome membrane [GO:0010008]; Golgi-associated vesicle membrane [GO:0030660]; integral component of cytoplasmic side of endoplasmic reticulum membrane [GO:0071458]; integral component of lumenal side of endoplasmic reticulum membrane [GO:0071556]; lysosomal membrane [GO:0005765]	aspartic endopeptidase activity, intramembrane cleaving [GO:0042500]	GO:0005765; GO:0010008; GO:0030660; GO:0033619; GO:0042500; GO:0071458; GO:0071556	reviewed	Oryza sativa subsp. japonica (Rice)	301	205	117	538	679	726	347	0	0	0	0	0	0	0	0
136	TRINITY_DN277394_c0_g1	15.096697278837	3.7251641709294	38.01163145657	1.02852447942362e-05	0.000157588280386937	O14233	TRINITY_DN277394_c0_g1_i1	3.6e-20	mRNA 3'-end-processing protein rna14	mRNA cleavage [GO:0006379]; mRNA polyadenylation [GO:0006378]; regulation of mRNA 3'-end processing [GO:0031440]; RNA 3'-end processing [GO:0031123]	mitochondrion [GO:0005739]; mRNA cleavage and polyadenylation specificity factor complex [GO:0005847]; nucleus [GO:0005634]	mRNA binding [GO:0003729]	GO:0003729; GO:0005634; GO:0005739; GO:0005847; GO:0006378; GO:0006379; GO:0031123; GO:0031440	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	8	65	16	19	30	4	3	0	0	0	0	0	0	0	0
137	TRINITY_DN277395_c0_g1	-4.57352328681573	6.39278974841393	12.9469035814333	0.00151435159519024	0.0122694193379942	O81078	TRINITY_DN277395_c0_g1_i1	5.3e-27	Glutamate receptor 2.9 (Ligand-gated ion channel 2.9)	calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular response to amino acid stimulus [GO:0071230]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	calcium channel activity [GO:0005262]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]	GO:0004970; GO:0005262; GO:0005886; GO:0006816; GO:0008066; GO:0016021; GO:0019722; GO:0071230	reviewed	Arabidopsis thaliana (Mouse-ear cress)	28	9	28	9	10	10	13	233	239	186	240	68	122	100	60
138	TRINITY_DN277915_c0_g1	21.7137055142311	12.6203378127874	348.333131546983	2.10710994187124e-15	8.15188158761435e-13	O94489	TRINITY_DN277915_c0_g1_i1	5.1e-209	Elongation factor 3 (EF-3)	cytoplasmic translational elongation [GO:0002182]	cytosol [GO:0005829]	ATPase activity [GO:0016887]; ATP binding [GO:0005524]; translation elongation factor activity [GO:0003746]	GO:0002182; GO:0003746; GO:0005524; GO:0005829; GO:0016887	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	10681	15572	3546	8865	12467	10024	3944	7	6	8	14	6	2	13	6
139	TRINITY_DN277933_c0_g1	-4.90669646760069	7.93711751471602	24.3827997785896	5.42137475889072e-05	0.000714006590585821	Q5N712	TRINITY_DN277933_c0_g1_i1	3.8e-69	Lysine-specific demethylase JMJ705 (EC 1.14.11.-) (Jumonji domain-containing protein 705) (Lysine-specific histone demethylase JMJ705) (Protein JUMONJI 705)	chromatin remodeling [GO:0006338]; defense response [GO:0006952]; positive regulation of gene expression, epigenetic [GO:0045815]; positive regulation of growth rate [GO:0040010]	histone methyltransferase complex [GO:0035097]; nucleus [GO:0005634]	dioxygenase activity [GO:0051213]; histone demethylase activity [GO:0032452]; histone demethylase activity (H3-K27 specific) [GO:0071558]; histone demethylase activity (H3-trimethyl-K4 specific) [GO:0034647]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]	GO:0003676; GO:0005634; GO:0006338; GO:0006952; GO:0032452; GO:0034647; GO:0035097; GO:0040010; GO:0045815; GO:0046872; GO:0051213; GO:0071558	reviewed	Oryza sativa subsp. japonica (Rice)	136	103	49	32	5	19	31	794	515	424	233	330	363	565	398
140	TRINITY_DN278325_c0_g1	11.3255773115413	2.59120521062589	12.6548287207752	0.0024171305067164	0.0182909998002133	Q92359	TRINITY_DN278325_c0_g1_i1	2.9e-11	Pumilio domain-containing protein C6G9.14	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288]	cytosol [GO:0005829]	mRNA binding [GO:0003729]	GO:0000288; GO:0003729; GO:0005829	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	0	0	5	0	6	19	0	0	0	0	0	0	0	0	0
141	TRINITY_DN278343_c0_g1	-10.3171746404214	5.53889858295791	30.4506790004066	1.29590719290468e-05	0.000193760036813526	A7S6A5	TRINITY_DN278343_c0_g1_i2	7.6e-87	Protein SDA1 homolog (SDA1 domain-containing protein 1 homolog)	actin cytoskeleton organization [GO:0030036]; ribosomal large subunit biogenesis [GO:0042273]; ribosomal large subunit export from nucleus [GO:0000055]	nucleolus [GO:0005730]; nucleus [GO:0005634]		GO:0000055; GO:0005634; GO:0005730; GO:0030036; GO:0042273	reviewed	Nematostella vectensis (Starlet sea anemone)	2	8	1	0	1	1	0	234	102	213	121	37	12	44	48
142	TRINITY_DN278380_c0_g1	3.9774903850533	7.60678273641512	18.7996232510394	0.00024313116696749	0.00257702384165884	Q9XGY4	TRINITY_DN278380_c0_g1_i1	1.1e-23	Mitochondrial import inner membrane translocase subunit TIM8	chaperone-mediated protein transport [GO:0072321]	mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]	metal ion binding [GO:0046872]	GO:0005739; GO:0005758; GO:0046872; GO:0072321	reviewed	Arabidopsis thaliana (Mouse-ear cress)	278	324	548	71	111	75	77	59	47	109	45	49	182	109	101
143	TRINITY_DN278387_c0_g1	-6.12284806612457	9.41685565719731	37.4924303216975	3.00505561897531e-06	5.110245681719e-05	Q9CAP8	TRINITY_DN278387_c0_g1_i1	4.1e-11	Long chain acyl-CoA synthetase 9, chloroplastic (EC 6.2.1.3)	fatty acid metabolic process [GO:0006631]	chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; membrane [GO:0016020]; plastid [GO:0009536]	acyl-CoA ligase activity [GO:0003996]; ATP binding [GO:0005524]; decanoate-CoA ligase activity [GO:0102391]; long-chain fatty acid-CoA ligase activity [GO:0004467]	GO:0003996; GO:0004467; GO:0005524; GO:0006631; GO:0009507; GO:0009536; GO:0009941; GO:0016020; GO:0102391	reviewed	Arabidopsis thaliana (Mouse-ear cress)	168	53	73	42	40	100	91	1865	1627	1029	1011	1783	441	1401	973
144	TRINITY_DN278824_c0_g1	-8.53201591092851	6.8614800871797	38.1332552501664	2.6542778941067e-06	4.53866855373493e-05	P0ABU3	TRINITY_DN278824_c0_g1_i7	6.3e-18	Ribosome-binding ATPase YchF			ATPase activity [GO:0016887]; ATP binding [GO:0005524]; GTP binding [GO:0005525]; metal ion binding [GO:0046872]; ribosomal large subunit binding [GO:0043023]; ribosome binding [GO:0043022]	GO:0005524; GO:0005525; GO:0016887; GO:0043022; GO:0043023; GO:0046872	reviewed	Escherichia coli O157:H7	4	4	6	7	3	5	19	457	361	328	193	146	71	243	149
145	TRINITY_DN278923_c1_g1	11.1253726716705	5.17696213688337	24.021186705551	5.93975782462158e-05	0.000769186212016895	Q8VZQ2	TRINITY_DN278923_c1_g1_i1	2.7e-16	Transcription factor MYB61 (Myb-related protein 61) (AtMYB61)	cell differentiation [GO:0030154]; phloem or xylem histogenesis [GO:0010087]; regulation of stomatal movement [GO:0010119]; response to auxin [GO:0009733]; root development [GO:0048364]; seed coat development [GO:0010214]; xylem development [GO:0010089]	nucleus [GO:0005634]	DNA-binding transcription factor activity [GO:0003700]; sequence-specific DNA binding [GO:0043565]; transcription regulatory region DNA binding [GO:0044212]	GO:0003700; GO:0005634; GO:0009733; GO:0010087; GO:0010089; GO:0010119; GO:0010214; GO:0030154; GO:0043565; GO:0044212; GO:0048364	reviewed	Arabidopsis thaliana (Mouse-ear cress)	39	60	29	19	52	40	84	2	0	6	0	4	0	0	0
146	TRINITY_DN278928_c0_g1	11.987993529716	2.61372644155218	13.6953276028641	0.00177027660373156	0.0139414913194636	P34574	TRINITY_DN278928_c0_g1_i1	8.8e-65	Probable clathrin heavy chain 1	apical protein localization [GO:0045176]; cortical actin cytoskeleton organization [GO:0030866]; determination of adult lifespan [GO:0008340]; embryo development ending in birth or egg hatching [GO:0009792]; intracellular protein transport [GO:0006886]; positive regulation of clathrin-dependent endocytosis [GO:2000370]; protein localization [GO:0008104]; receptor-mediated endocytosis [GO:0006898]	apical plasma membrane [GO:0016324]; cell cortex [GO:0005938]; clathrin-coated endocytic vesicle [GO:0045334]; clathrin coat of coated pit [GO:0030132]; clathrin coat of trans-Golgi network vesicle [GO:0030130]; clathrin complex [GO:0071439]; cytoplasm [GO:0005737]; cytoplasmic side of plasma membrane [GO:0009898]; cytoplasmic vesicle [GO:0031410]; endocytic vesicle [GO:0030139]; mitotic spindle [GO:0072686]; plasma membrane [GO:0005886]	clathrin light chain binding [GO:0032051]; structural molecule activity [GO:0005198]	GO:0005198; GO:0005737; GO:0005886; GO:0005938; GO:0006886; GO:0006898; GO:0008104; GO:0008340; GO:0009792; GO:0009898; GO:0016324; GO:0030130; GO:0030132; GO:0030139; GO:0030866; GO:0031410; GO:0032051; GO:0045176; GO:0045334; GO:0071439; GO:0072686; GO:2000370	reviewed	Caenorhabditis elegans	0	0	9	0	9	15	0	0	0	0	0	0	0	0	0
147	TRINITY_DN278965_c0_g1	12.4501046720134	2.65640910387906	14.1466886892927	0.00155221164446673	0.0125433290851815	Q20065	TRINITY_DN278965_c0_g1_i1	1.3e-34	Prolyl 4-hydroxylase subunit alpha-2 (4-PH alpha-2) (EC 1.14.11.2) (Procollagen-proline,2-oxoglutarate-4-dioxygenase subunit alpha-2)	macromolecule modification [GO:0043412]; oxidation-reduction process [GO:0055114]; peptidyl-proline hydroxylation to 4-hydroxy-L-proline [GO:0018401]	endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]	iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [GO:0016702]; peptidyl-proline 4-dioxygenase activity [GO:0031545]; procollagen-proline 4-dioxygenase activity [GO:0004656]	GO:0004656; GO:0005506; GO:0005783; GO:0005788; GO:0016702; GO:0018401; GO:0031418; GO:0031545; GO:0043412; GO:0055114	reviewed	Caenorhabditis elegans	0	0	16	0	6	12	0	0	0	0	0	0	0	0	0
148	TRINITY_DN278966_c0_g1	-2.87703387851137	9.93820688148512	8.57773121540312	0.0075420961671599	0.0450603450567481	Q40478	TRINITY_DN278966_c0_g1_i1	3.3e-32	Ethylene-responsive transcription factor 5 (Ethylene-responsive element-binding factor 4) (EREBP-4) (Ethylene-responsive element-binding factor 5 homolog) (NtERF4)	defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]	nucleus [GO:0005634]	DNA binding [GO:0003677]; DNA-binding transcription factor activity [GO:0003700]	GO:0003677; GO:0003700; GO:0005634; GO:0006952; GO:0009873	reviewed	Nicotiana tabacum (Common tobacco)	842	336	282	176	84	284	184	3824	3412	1619	978	1673	288	915	622
149	TRINITY_DN278966_c0_g2	-2.80889180494953	7.94444530304553	8.4245517634182	0.00801780473761878	0.0469983061797919	Q40478	TRINITY_DN278966_c0_g2_i1	3.3e-32	Ethylene-responsive transcription factor 5 (Ethylene-responsive element-binding factor 4) (EREBP-4) (Ethylene-responsive element-binding factor 5 homolog) (NtERF4)	defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]	nucleus [GO:0005634]	DNA binding [GO:0003677]; DNA-binding transcription factor activity [GO:0003700]	GO:0003677; GO:0003700; GO:0005634; GO:0006952; GO:0009873	reviewed	Nicotiana tabacum (Common tobacco)	222	67	115	74	20	46	42	777	450	382	262	202	318	645	243
150	TRINITY_DN292320_c0_g2	21.9364001465132	11.7709303210387	298.843604831525	1.09902299681544e-14	1.90575791791826e-12	P49691	TRINITY_DN292320_c0_g2_i1	5.5e-107	60S ribosomal protein L4-2 (L1)	response to cytokinin [GO:0009735]; translation [GO:0006412]	chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]	mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]	GO:0003729; GO:0003735; GO:0005730; GO:0005773; GO:0005774; GO:0005829; GO:0005886; GO:0006412; GO:0009506; GO:0009507; GO:0009735; GO:0016020; GO:0022625; GO:0022626; GO:0042788	reviewed	Arabidopsis thaliana (Mouse-ear cress)	3372	2718	1895	5183	7685	6819	4217	0	1	2	4	7	1	11	4
151	TRINITY_DN292320_c0_g4	22.8773198439766	10.9792527002554	281.773892174628	2.06246569121462e-14	2.45512742858048e-12	O14734	TRINITY_DN292320_c0_g4_i1	2.1e-53	Acyl-coenzyme A thioesterase 8 (Acyl-CoA thioesterase 8) (EC 3.1.2.1) (EC 3.1.2.11) (EC 3.1.2.2) (EC 3.1.2.3) (EC 3.1.2.5) (Choloyl-coenzyme A thioesterase) (EC 3.1.2.27) (HIV-Nef-associated acyl-CoA thioesterase) (Peroxisomal acyl-CoA thioesterase 2) (PTE-2) (Peroxisomal acyl-coenzyme A thioester hydrolase 1) (PTE-1) (Peroxisomal long-chain acyl-CoA thioesterase 1) (Thioesterase II) (hACTE-III) (hACTEIII) (hTE)	acyl-CoA metabolic process [GO:0006637]; alpha-linolenic acid metabolic process [GO:0036109]; bile acid biosynthetic process [GO:0006699]; dicarboxylic acid catabolic process [GO:0043649]; fatty acid beta-oxidation using acyl-CoA oxidase [GO:0033540]; fatty acid catabolic process [GO:0009062]; negative regulation of CD4 biosynthetic process [GO:0045225]; peroxisome fission [GO:0016559]; protein targeting to peroxisome [GO:0006625]; viral process [GO:0016032]	cytosol [GO:0005829]; peroxisomal matrix [GO:0005782]	acetoacetyl-CoA hydrolase activity [GO:0047603]; acetyl-CoA hydrolase activity [GO:0003986]; acyl-CoA hydrolase activity [GO:0047617]; carboxylic ester hydrolase activity [GO:0052689]; choloyl-CoA hydrolase activity [GO:0033882]; CoA hydrolase activity [GO:0016289]; hydroxymethylglutaryl-CoA hydrolase activity [GO:0047994]; medium-chain acyl-CoA hydrolase activity [GO:0052815]; myristoyl-CoA hydrolase activity [GO:0102991]; palmitoyl-CoA hydrolase activity [GO:0016290]; signaling receptor binding [GO:0005102]; succinyl-CoA hydrolase activity [GO:0004778]	GO:0003986; GO:0004778; GO:0005102; GO:0005782; GO:0005829; GO:0006625; GO:0006637; GO:0006699; GO:0009062; GO:0016032; GO:0016289; GO:0016290; GO:0016559; GO:0033540; GO:0033882; GO:0036109; GO:0043649; GO:0045225; GO:0047603; GO:0047617; GO:0047994; GO:0052689; GO:0052815; GO:0102991	reviewed	Homo sapiens (Human)	1892	2206	1177	3493	3720	3654	2532	0	0	0	2	2	1	10	0
152	TRINITY_DN292331_c0_g1	19.9484273039928	7.13283875355563	116.705790860879	8.35200861943137e-10	2.37151070432478e-08	O43290	TRINITY_DN292331_c0_g1_i1	1.3e-09	U4/U6.U5 tri-snRNP-associated protein 1 (SNU66 homolog) (hSnu66) (Squamous cell carcinoma antigen recognized by T-cells 1) (SART-1) (hSART-1) (U4/U6.U5 tri-snRNP-associated 110 kDa protein) (allergen Hom s 1)	maturation of 5S rRNA [GO:0000481]; mRNA cis splicing, via spliceosome [GO:0045292]; mRNA splicing, via spliceosome [GO:0000398]; positive regulation of cytotoxic T cell differentiation [GO:0045585]; spliceosomal snRNP assembly [GO:0000387]	Cajal body [GO:0015030]; catalytic step 2 spliceosome [GO:0071013]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; nuclear speck [GO:0016607]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; U2-type precatalytic spliceosome [GO:0071005]; U4/U6 x U5 tri-snRNP complex [GO:0046540]	RNA binding [GO:0003723]	GO:0000387; GO:0000398; GO:0000481; GO:0003723; GO:0005634; GO:0005654; GO:0005737; GO:0005794; GO:0005829; GO:0015030; GO:0016607; GO:0045292; GO:0045585; GO:0046540; GO:0071005; GO:0071013	reviewed	Homo sapiens (Human)	243	362	166	213	178	173	87	0	0	3	0	0	0	0	0
153	TRINITY_DN292335_c2_g3	9.67843841621811	2.90511110285674	10.7405297321444	0.00330197603921776	0.0233324562588561	P28748	TRINITY_DN292335_c2_g3_i1	3.2e-86	GTP-binding nuclear protein spi1	negative regulation of G2/M transition of mitotic cell cycle [GO:0010972]; poly(A)+ mRNA export from nucleus [GO:0016973]; protein import into nucleus [GO:0006606]; signaling [GO:0023052]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; Ran guanyl-nucleotide exchange factor activity [GO:0005087]	GO:0003924; GO:0005087; GO:0005525; GO:0005634; GO:0005737; GO:0005829; GO:0006606; GO:0010972; GO:0016973; GO:0023052	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	0	0	35	0	1	6	0	0	0	1	0	0	1	0	0
154	TRINITY_DN292371_c5_g1	5.57061450999189	3.85263693734305	8.307810427189	0.00840256099895374	0.0487002365014267	Q9I8F9	TRINITY_DN292371_c5_g1_i2	2.2e-136	Heat shock 70 kDa protein 1 (HSP70-1)	cellular response to heat [GO:0034605]; cellular response to unfolded protein [GO:0034620]; chaperone cofactor-dependent protein refolding [GO:0051085]; protein refolding [GO:0042026]; response to unfolded protein [GO:0006986]	cytoplasm [GO:0005737]; cytosol [GO:0005829]	ATPase activity [GO:0016887]; ATPase activity, coupled [GO:0042623]; ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; misfolded protein binding [GO:0051787]; protein folding chaperone [GO:0044183]; unfolded protein binding [GO:0051082]	GO:0005524; GO:0005737; GO:0005829; GO:0006986; GO:0016887; GO:0031072; GO:0034605; GO:0034620; GO:0042026; GO:0042623; GO:0044183; GO:0051082; GO:0051085; GO:0051787	reviewed	Oryzias latipes (Japanese rice fish) (Japanese killifish)	3	29	9	22	29	12	10	19	1	10	5	0	5	1	0
155	TRINITY_DN292378_c0_g2	-12.6997763693268	8.68151459720287	99.8907629138558	7.61447449336755e-10	2.18211097749746e-08	Q9SK55	TRINITY_DN292378_c0_g2_i1	6.6e-55	Transcription factor JUNGBRUNNEN 1 (NAC domain-containing protein 42) (ANAC042)	anthocyanin-containing compound biosynthetic process [GO:0009718]; camalexin biosynthetic process [GO:0010120]; hyperosmotic salinity response [GO:0042538]; leaf senescence [GO:0010150]; negative regulation of leaf senescence [GO:1900056]; proline biosynthetic process [GO:0006561]; trehalose biosynthetic process [GO:0005992]	nucleus [GO:0005634]	DNA binding [GO:0003677]; DNA-binding transcription factor activity [GO:0003700]	GO:0003677; GO:0003700; GO:0005634; GO:0005992; GO:0006561; GO:0009718; GO:0010120; GO:0010150; GO:0042538; GO:1900056	reviewed	Arabidopsis thaliana (Mouse-ear cress)	7	5	3	7	7	6	3	1075	1475	1241	1850	232	58	1062	199
156	TRINITY_DN292382_c1_g2	-7.0072815936678	7.24121953833681	34.115504832781	5.91651011764128e-06	9.6376835863683e-05	Q9ZUU4	TRINITY_DN292382_c1_g2_i1	2e-68	RNA-binding protein CP29B, chloroplastic (Ribonucleoprotein At2g37220)	chloroplast rRNA processing [GO:1901259]; innate immune response [GO:0045087]; mRNA processing [GO:0006397]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]	chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; ribonucleoprotein complex [GO:1990904]; stromule [GO:0010319]; thylakoid [GO:0009579]	mRNA binding [GO:0003729]; poly(U) RNA binding [GO:0008266]; RNA binding [GO:0003723]	GO:0003723; GO:0003729; GO:0006397; GO:0008266; GO:0009409; GO:0009507; GO:0009534; GO:0009535; GO:0009570; GO:0009579; GO:0009737; GO:0009941; GO:0010319; GO:0045087; GO:1901259; GO:1990904	reviewed	Arabidopsis thaliana (Mouse-ear cress)	28	31	22	7	5	7	12	426	574	155	387	256	141	352	80
157	TRINITY_DN292383_c0_g1	-4.98708436285638	9.56931643744376	32.0933935424096	9.05787543605086e-06	0.00014158648724534	O64888	TRINITY_DN292383_c0_g1_i6	1e-164	Ribose-phosphate pyrophosphokinase 5, chloroplastic (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthase 5)	5-phosphoribose 1-diphosphate biosynthetic process [GO:0006015]; nucleoside metabolic process [GO:0009116]; nucleotide biosynthetic process [GO:0009165]; purine nucleotide biosynthetic process [GO:0006164]; ribonucleoside monophosphate biosynthetic process [GO:0009156]	chloroplast [GO:0009507]; cytoplasm [GO:0005737]; plastid [GO:0009536]; ribose phosphate diphosphokinase complex [GO:0002189]	ATP binding [GO:0005524]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; ribose phosphate diphosphokinase activity [GO:0004749]	GO:0000287; GO:0002189; GO:0004749; GO:0005524; GO:0005737; GO:0006015; GO:0006164; GO:0009116; GO:0009156; GO:0009165; GO:0009507; GO:0009536; GO:0016301	reviewed	Arabidopsis thaliana (Mouse-ear cress)	308	96	93	99	50	103	181	2490	1593	1358	1087	802	878	2065	1250
158	TRINITY_DN292384_c0_g1	23.888195776376	8.56927986057527	306.702768780323	1.30044471469524e-13	9.14744634541312e-12	Q09818	TRINITY_DN292384_c0_g1_i1	3e-42	Putative general negative regulator of transcription C16C9.04c	negative regulation of gene expression [GO:0010629]; nuclear-transcribed mRNA poly(A) tail shortening [GO:0000289]; protein ubiquitination [GO:0016567]	CCR4-NOT complex [GO:0030014]; CCR4-NOT core complex [GO:0030015]; cytosol [GO:0005829]; nucleus [GO:0005634]	metal ion binding [GO:0046872]; RNA binding [GO:0003723]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]	GO:0000289; GO:0003723; GO:0004842; GO:0005634; GO:0005829; GO:0010629; GO:0016567; GO:0030014; GO:0030015; GO:0046872; GO:0061630	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	653	824	513	548	540	435	297	0	0	0	1	0	0	0	0
159	TRINITY_DN292387_c4_g1	3.03164204311001	10.3084893786188	22.4722417388876	8.85939114829749e-05	0.001110113992064	B8B7S5	TRINITY_DN292387_c4_g1_i1	2.2e-69	Protein BZR1 homolog 1 (OsBZR1) (Protein BRASSINAZOLE-RESISTANT 1 homolog 1)	brassinosteroid mediated signaling pathway [GO:0009742]; regulation of growth [GO:0040008]; transcription, DNA-templated [GO:0006351]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	DNA binding [GO:0003677]; DNA-binding transcription factor activity [GO:0003700]	GO:0003677; GO:0003700; GO:0005634; GO:0005737; GO:0006351; GO:0009742; GO:0040008	reviewed	Oryza sativa subsp. indica (Rice)	1126	2729	1557	744	928	645	1553	1042	767	591	509	743	847	1333	485
160	TRINITY_DN292396_c0_g1	-6.01382923314128	8.1544948037559	39.5213453664294	2.03777980379541e-06	3.56323643658011e-05	Q38967	TRINITY_DN292396_c0_g1_i2	7.4e-139	Amino acid permease 2 (Amino acid transporter AAP2)	acidic amino acid transport [GO:0015800]; amino acid transmembrane transport [GO:0003333]; amino acid transport [GO:0006865]; neutral amino acid transport [GO:0015804]; phloem loading [GO:0110126]	integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]	amino acid transmembrane transporter activity [GO:0015171]; symporter activity [GO:0015293]	GO:0003333; GO:0005886; GO:0005887; GO:0006865; GO:0015171; GO:0015293; GO:0015800; GO:0015804; GO:0110126	reviewed	Arabidopsis thaliana (Mouse-ear cress)	64	44	30	29	15	29	29	376	574	309	172	827	857	401	567
161	TRINITY_DN292396_c0_g2	-9.97372758361215	2.78735859038851	15.2873569494893	0.000803808661102134	0.00727423335120206	Q9FF99	TRINITY_DN292396_c0_g2_i1	1.6e-17	Probable amino acid permease 7 (Amino acid transporter AAP7)	amino acid transmembrane transport [GO:0003333]; amino acid transport [GO:0006865]	integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]	amino acid transmembrane transporter activity [GO:0015171]; symporter activity [GO:0015293]	GO:0003333; GO:0005886; GO:0006865; GO:0015171; GO:0015293; GO:0016020; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	0	0	0	0	1	15	14	10	2	9	7	8	13
162	TRINITY_DN292396_c0_g3	-8.40494498101468	3.29054768320728	12.3844271614166	0.00183729710482375	0.0143596831803775	Q8GUM3	TRINITY_DN292396_c0_g3_i1	2.7e-28	Amino acid permease 5 (Amino acid transporter AAP5)	amino acid transmembrane transport [GO:0003333]; arginine transport [GO:0015809]; basic amino acid transport [GO:0015802]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	amino acid transmembrane transporter activity [GO:0015171]; basic amino acid transmembrane transporter activity [GO:0015174]; symporter activity [GO:0015293]	GO:0003333; GO:0005886; GO:0015171; GO:0015174; GO:0015293; GO:0015802; GO:0015809; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)	1	0	0	2	0	0	0	14	19	26	5	18	10	22	10
163	TRINITY_DN292396_c0_g4	-9.31746425231106	1.96182293450054	12.0521262121138	0.00271724546053952	0.0201193174649995	Q38967	TRINITY_DN292396_c0_g4_i1	8.6e-23	Amino acid permease 2 (Amino acid transporter AAP2)	acidic amino acid transport [GO:0015800]; amino acid transmembrane transport [GO:0003333]; amino acid transport [GO:0006865]; neutral amino acid transport [GO:0015804]; phloem loading [GO:0110126]	integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]	amino acid transmembrane transporter activity [GO:0015171]; symporter activity [GO:0015293]	GO:0003333; GO:0005886; GO:0005887; GO:0006865; GO:0015171; GO:0015293; GO:0015800; GO:0015804; GO:0110126	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	0	0	0	0	0	5	2	7	0	4	9	2	2
164	TRINITY_DN292660_c0_g1	19.9615980199062	5.99142183427253	96.2802923911692	2.00738978853424e-08	5.17739282959457e-07	F4I9T0	TRINITY_DN292660_c0_g1_i1	7.6e-84	BEACH domain-containing protein B (BEACH-domain homolog B)		mitochondrion [GO:0005739]		GO:0005739	reviewed	Arabidopsis thaliana (Mouse-ear cress)	149	169	103	41	67	57	53	0	0	0	0	0	0	0	0
165	TRINITY_DN292909_c0_g1	-5.53505541535433	9.09517974588081	52.8462718114691	2.11121933741872e-07	4.25138738927239e-06	Q8GT66	TRINITY_DN292909_c0_g1_i1	1e-21	Protein TIC 40, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 40) (PsTIC40)	protein transport [GO:0015031]	chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]		GO:0009706; GO:0015031; GO:0016021	reviewed	Pisum sativum (Garden pea)	144	308	117	36	39	11	61	3024	1714	1696	977	346	312	625	516
166	TRINITY_DN292914_c1_g1	3.8196539883214	14.4208258856937	21.4909269249805	0.00011500381917338	0.00138496817253545	P04712	TRINITY_DN292914_c1_g1_i1	8.3e-208	Sucrose synthase 1 (EC 2.4.1.13) (Shrunken-1) (Sucrose-UDP glucosyltransferase 1)	protein tetramerization [GO:0051262]; response to anoxia [GO:0034059]; seed maturation [GO:0010431]; sucrose metabolic process [GO:0005985]		sucrose synthase activity [GO:0016157]	GO:0005985; GO:0010431; GO:0016157; GO:0034059; GO:0051262	reviewed	Zea mays (Maize)	35810	16300	27130	13899	17541	15462	28126	12849	12242	9963	7399	12305	9109	12484	10079
167	TRINITY_DN292950_c0_g1	-10.9812362528802	9.20469756982255	61.7073620617671	5.80063809322214e-08	1.3397742461584e-06	Q9ZT94	TRINITY_DN292950_c0_g1_i1	1.9e-09	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]	DNA integration [GO:0015074]; DNA recombination [GO:0006310]	retrotransposon nucleocapsid [GO:0000943]	aspartic-type endopeptidase activity [GO:0004190]; endonuclease activity [GO:0004519]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; RNA-directed DNA polymerase activity [GO:0003964]	GO:0000943; GO:0003676; GO:0003964; GO:0004190; GO:0004519; GO:0006310; GO:0015074; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)	220	20	23	6	0	1	1	3837	1809	1596	1075	265	332	1089	721
168	TRINITY_DN292951_c0_g1	-3.18047332080424	7.11046265153378	8.28035105318281	0.00849598923570892	0.0491496947374189	Q6NRK1	TRINITY_DN292951_c0_g1_i1	9e-12	Afadin- and alpha-actinin-binding protein A (ADIP-A) (Afadin DIL domain-interacting protein A) (SSX2-interacting protein A) (XSSX2IP)	cell adhesion [GO:0007155]; centrosome cycle [GO:0007098]	adherens junction [GO:0005912]; centriolar satellite [GO:0034451]; microtubule [GO:0005874]	microtubule minus-end binding [GO:0051011]	GO:0005874; GO:0005912; GO:0007098; GO:0007155; GO:0034451; GO:0051011	reviewed	Xenopus laevis (African clawed frog)	60	38	66	42	11	19	46	297	270	280	203	162	115	256	223
169	TRINITY_DN292961_c0_g1	-4.18034459655284	9.51841609247972	31.033249853215	1.13984553714551e-05	0.000172932447914968	O22207	TRINITY_DN292961_c0_g1_i1	2.5e-220	Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.4.19.12) (Deubiquitinating enzyme 5) (AtUBP5) (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5)	protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511]	nucleus [GO:0005634]	thiol-dependent ubiquitin-specific protease activity [GO:0004843]	GO:0004843; GO:0005634; GO:0006511; GO:0016579	reviewed	Arabidopsis thaliana (Mouse-ear cress)	409	327	254	79	39	78	126	2532	1980	1967	947	698	843	1270	742
170	TRINITY_DN292970_c0_g1	20.8921925223861	8.29820604365944	229.535628789869	1.81132255087401e-13	1.19277516913937e-11	Q8VEG4	TRINITY_DN292970_c0_g1_i1	7e-48	Exonuclease 3'-5' domain-containing protein 2 (EC 3.1.11.1) (Exonuclease 3'-5' domain-like-containing protein 2)	DNA double-strand break processing [GO:0000729]; double-strand break repair [GO:0006302]; double-strand break repair via homologous recombination [GO:0000724]; nucleic acid phosphodiester bond hydrolysis [GO:0090305]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	3'-5' exonuclease activity [GO:0008408]; exodeoxyribonuclease I activity [GO:0008852]; nucleic acid binding [GO:0003676]; single-stranded DNA 3'-5' exodeoxyribonuclease activity [GO:0008310]	GO:0000724; GO:0000729; GO:0003676; GO:0005634; GO:0005737; GO:0006302; GO:0008310; GO:0008408; GO:0008852; GO:0090305	reviewed	Mus musculus (Mouse)	432	402	303	533	486	511	273	0	0	0	1	0	0	1	1
171	TRINITY_DN292970_c0_g2	11.9088291314446	2.51934758908879	23.0753061403815	0.000164744907524215	0.001902557793983	Q8VEG4	TRINITY_DN292970_c0_g2_i1	9e-30	Exonuclease 3'-5' domain-containing protein 2 (EC 3.1.11.1) (Exonuclease 3'-5' domain-like-containing protein 2)	DNA double-strand break processing [GO:0000729]; double-strand break repair [GO:0006302]; double-strand break repair via homologous recombination [GO:0000724]; nucleic acid phosphodiester bond hydrolysis [GO:0090305]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	3'-5' exonuclease activity [GO:0008408]; exodeoxyribonuclease I activity [GO:0008852]; nucleic acid binding [GO:0003676]; single-stranded DNA 3'-5' exodeoxyribonuclease activity [GO:0008310]	GO:0000724; GO:0000729; GO:0003676; GO:0005634; GO:0005737; GO:0006302; GO:0008310; GO:0008408; GO:0008852; GO:0090305	reviewed	Mus musculus (Mouse)	1	30	4	2	8	1	5	0	0	0	0	0	0	0	0
172	TRINITY_DN292973_c0_g1	-4.66865157568464	6.97237871153889	14.7258668086643	0.000840030155334133	0.0075798639380733	Q6Z382	TRINITY_DN292973_c0_g1_i1	0	Coatomer subunit gamma-2 (Gamma-2-coat protein) (Gamma-2-COP)	endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein secretion [GO:0009306]	COPI vesicle coat [GO:0030126]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; membrane [GO:0016020]	structural molecule activity [GO:0005198]	GO:0000139; GO:0005198; GO:0005783; GO:0005793; GO:0005794; GO:0006886; GO:0006888; GO:0006891; GO:0009306; GO:0016020; GO:0030126	reviewed	Oryza sativa subsp. japonica (Rice)	38	16	14	31	6	18	46	265	198	172	235	138	180	299	265
173	TRINITY_DN292973_c0_g2	-2.15422595257493	10.2958449097169	8.38130190640224	0.00815803591447022	0.0476398512363874	Q0WW26	TRINITY_DN292973_c0_g2_i1	3.2e-10	Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)	endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein secretion [GO:0009306]	chloroplast [GO:0009507]; COPI vesicle coat [GO:0030126]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]	structural molecule activity [GO:0005198]	GO:0000139; GO:0005198; GO:0005783; GO:0005793; GO:0005794; GO:0005829; GO:0005886; GO:0006886; GO:0006888; GO:0006891; GO:0009306; GO:0009506; GO:0009507; GO:0016020; GO:0030126	reviewed	Arabidopsis thaliana (Mouse-ear cress)	589	222	511	592	323	494	572	2513	2091	1836	1668	1248	1416	2516	1780
174	TRINITY_DN292975_c0_g1	19.0955149421413	5.73927857671163	81.5140180321584	6.67041180696541e-08	1.51800915754103e-06	B1ZSW8	TRINITY_DN292975_c0_g1_i1	1.3e-96	Aspartate--tRNA(Asp/Asn) ligase (EC 6.1.1.23) (Aspartyl-tRNA synthetase) (AspRS) (Non-discriminating aspartyl-tRNA synthetase) (ND-AspRS)	aspartyl-tRNA aminoacylation [GO:0006422]	cytoplasm [GO:0005737]	aspartate-tRNA(Asn) ligase activity [GO:0050560]; aspartate-tRNA ligase activity [GO:0004815]; ATP binding [GO:0005524]; nucleic acid binding [GO:0003676]	GO:0003676; GO:0004815; GO:0005524; GO:0005737; GO:0006422; GO:0050560	reviewed	Opitutus terrae (strain DSM 11246 / JCM 15787 / PB90-1)	66	56	30	68	98	103	55	0	0	0	0	0	0	0	0
175	TRINITY_DN292978_c1_g13	16.8480643117911	4.67595140756117	19.7374636855655	0.000355475766759376	0.00364303807324593	P08428	TRINITY_DN292978_c1_g13_i1	1.2e-111	ATP synthase subunit alpha, mitochondrial (ATP synthase F1 subunit alpha)	ATP synthesis coupled proton transport [GO:0015986]	mitochondrial inner membrane [GO:0005743]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]	ATP binding [GO:0005524]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]	GO:0005524; GO:0005743; GO:0015986; GO:0045261; GO:0046933	reviewed	Xenopus laevis (African clawed frog)	0	0	46	0	44	87	0	0	0	0	0	0	0	0	0
176	TRINITY_DN292979_c1_g2	-6.73551003099509	8.07100555724032	29.2768535446298	1.68584410309103e-05	0.000244961854416279	B9DG24	TRINITY_DN292979_c1_g2_i2	4.7e-26	Transcription initiation factor TFIID subunit 7 (TBP-associated factor 7) (AtTAF7)	regulation of transcription by RNA polymerase II [GO:0006357]; RNA polymerase II preinitiation complex assembly [GO:0051123]	transcription factor TFIID complex [GO:0005669]	histone acetyltransferase binding [GO:0035035]; transcription coactivator activity [GO:0003713]; transcription factor binding [GO:0008134]; transcription regulatory region DNA binding [GO:0044212]	GO:0003713; GO:0005669; GO:0006357; GO:0008134; GO:0035035; GO:0044212; GO:0051123	reviewed	Arabidopsis thaliana (Mouse-ear cress)	128	6	26	15	4	18	13	846	649	558	397	360	344	726	389
177	TRINITY_DN292979_c1_g6	-4.26224324675002	6.13148406210754	9.63507116854681	0.00499416277172684	0.031935813591931	Q9ZUM2	TRINITY_DN292979_c1_g6_i5	2.3e-06	Tobamovirus multiplication protein 3 (AtTOM3)	viral replication complex formation and maintenance [GO:0046786]	integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]		GO:0009705; GO:0016021; GO:0046786	reviewed	Arabidopsis thaliana (Mouse-ear cress)	11	47	11	6	8	18	16	176	150	146	172	128	36	102	53
178	TRINITY_DN292998_c2_g1	21.3144470330045	10.7944038068706	203.427665015221	6.39743163883264e-13	3.60000925857946e-11	O65731	TRINITY_DN292998_c2_g1_i2	3.2e-64	40S ribosomal protein S5 (Fragment)	translation [GO:0006412]	small ribosomal subunit [GO:0015935]	RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]	GO:0003723; GO:0003735; GO:0006412; GO:0015935	reviewed	Cicer arietinum (Chickpea) (Garbanzo)	1504	1458	846	2875	3611	3706	2034	0	0	0	5	0	1	10	1
179	TRINITY_DN292998_c5_g6	15.9488422594326	5.16417385895822	20.2298859957834	0.000219145585221442	0.00240516165340554	P49041	TRINITY_DN292998_c5_g6_i1	4e-91	40S ribosomal protein S5	ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412]	cytosolic small ribosomal subunit [GO:0022627]	mRNA binding [GO:0003729]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0000028; GO:0003729; GO:0003735; GO:0006412; GO:0019843; GO:0022627	reviewed	Caenorhabditis elegans	0	0	38	0	68	143	0	0	1	0	0	0	0	0	0
180	TRINITY_DN292999_c3_g1	-4.12862963741266	9.60405985368854	19.2940037666986	0.000211079573528573	0.00234154580670586	Q9C942	TRINITY_DN292999_c3_g1_i1	1.2e-19	Caffeoylshikimate esterase (EC 3.1.1.-) (Lysophospholipase 2) (LysoPL2)	lignin biosynthetic process [GO:0009809]; response to cadmium ion [GO:0046686]; response to hydrogen peroxide [GO:0042542]; response to oxidative stress [GO:0006979]; response to zinc ion [GO:0010043]	endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]	2-acylglycerol O-acyltransferase activity [GO:0003846]; caffeoyl-CoA: alcohol caffeoyl transferase activity [GO:0090430]; hydrolase activity [GO:0016787]; lysophospholipase activity [GO:0004622]	GO:0003846; GO:0004622; GO:0005783; GO:0005794; GO:0005886; GO:0006979; GO:0009506; GO:0009809; GO:0010043; GO:0016020; GO:0016787; GO:0042542; GO:0046686; GO:0090430	reviewed	Arabidopsis thaliana (Mouse-ear cress)	702	193	140	97	27	77	153	2642	2002	1482	914	958	660	1781	861
181	TRINITY_DN293332_c0_g1	20.6651077550348	7.73004389736649	182.527313541444	1.96149134651567e-12	8.55044467248733e-11	Q5Z6F5	TRINITY_DN293332_c0_g1_i1	9e-33	Probable protein phosphatase 2C 59 (OsPP2C59) (EC 3.1.3.16)			magnesium-dependent protein serine/threonine phosphatase activity [GO:0004724]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]	GO:0004722; GO:0004724; GO:0046872	reviewed	Oryza sativa subsp. japonica (Rice)	366	414	287	277	270	288	157	0	0	0	1	0	0	1	0
182	TRINITY_DN293332_c0_g2	20.7046591571643	8.09240960209827	184.826293222699	1.72459071789644e-12	7.62515467412782e-11	Q99JB2	TRINITY_DN293332_c0_g2_i1	1.2e-49	Stomatin-like protein 2, mitochondrial (SLP-2) (mslp2)	CD4-positive, alpha-beta T cell activation [GO:0035710]; cellular calcium ion homeostasis [GO:0006874]; interleukin-2 production [GO:0032623]; lipid localization [GO:0010876]; mitochondrial ATP synthesis coupled proton transport [GO:0042776]; mitochondrial calcium ion transmembrane transport [GO:0006851]; mitochondrial protein processing [GO:0034982]; mitochondrion organization [GO:0007005]; positive regulation of cardiolipin metabolic process [GO:1900210]; positive regulation of mitochondrial DNA replication [GO:0090297]; positive regulation of mitochondrial membrane potential [GO:0010918]; protein complex oligomerization [GO:0051259]; stress-induced mitochondrial fusion [GO:1990046]; T cell receptor signaling pathway [GO:0050852]	actin cytoskeleton [GO:0015629]; COP9 signalosome [GO:0008180]; extrinsic component of plasma membrane [GO:0019897]; immunological synapse [GO:0001772]; membrane raft [GO:0045121]; mitochondrial inner membrane [GO:0005743]; mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]; T cell receptor complex [GO:0042101]	cardiolipin binding [GO:1901612]; GTPase binding [GO:0051020]	GO:0001772; GO:0005739; GO:0005743; GO:0005758; GO:0006851; GO:0006874; GO:0007005; GO:0008180; GO:0010876; GO:0010918; GO:0015629; GO:0019897; GO:0032623; GO:0034982; GO:0035710; GO:0042101; GO:0042776; GO:0045121; GO:0050852; GO:0051020; GO:0051259; GO:0090297; GO:1900210; GO:1901612; GO:1990046	reviewed	Mus musculus (Mouse)	471	482	459	299	381	342	198	0	0	0	2	0	0	1	0
183	TRINITY_DN293340_c0_g2	5.42852587851527	6.25662658688883	9.58669683837647	0.00508738832914272	0.0322653009809359	Q70FG7	TRINITY_DN293340_c0_g2_i1	8.3e-42	4,5-DOPA dioxygenase extradiol (EC 1.13.11.29)	cellular aromatic compound metabolic process [GO:0006725]; oxidation-reduction process [GO:0055114]	cytoplasm [GO:0005737]	DOPA dioxygenase activity [GO:0046566]; ferrous iron binding [GO:0008198]; stizolobate synthase activity [GO:0050297]; zinc ion binding [GO:0008270]	GO:0005737; GO:0006725; GO:0008198; GO:0008270; GO:0046566; GO:0050297; GO:0055114	reviewed	Beta vulgaris (Sugar beet)	10	167	18	109	445	16	66	77	8	19	17	2	52	7	0
184	TRINITY_DN293346_c7_g1	11.5780275257019	5.22304229331439	13.0312043518546	0.00174428142859793	0.0138070358606409	Q03206	TRINITY_DN293346_c7_g1_i1	2.8e-78	Ras-related protein ced-10 (CErac1) (Cell death protein 10) (Cell-corpse engulfment protein ced-10) (Ras-related protein rac-1)	actin cytoskeleton organization [GO:0030036]; apoptotic process [GO:0006915]; axon extension involved in axon guidance [GO:0048846]; axon regeneration [GO:0031103]; body morphogenesis [GO:0010171]; cell migration [GO:0016477]; distal tip cell migration [GO:0097628]; dorsal/ventral axon guidance [GO:0033563]; embryonic body morphogenesis [GO:0010172]; embryonic morphogenesis [GO:0048598]; engulfment of apoptotic cell [GO:0043652]; establishment of mitotic spindle orientation [GO:0000132]; gastrulation [GO:0007369]; left/right axis specification [GO:0070986]; motor neuron axon guidance [GO:0008045]; nematode larval development [GO:0002119]; nematode male tail tip morphogenesis [GO:0045138]; neuron migration [GO:0001764]; neuron projection morphogenesis [GO:0048812]; positive regulation of distal tip cell migration [GO:1903356]; positive regulation of engulfment of apoptotic cell [GO:1901076]; regulation of cell migration [GO:0030334]; regulation of phagocytosis [GO:0050764]; regulation of synaptic transmission, GABAergic [GO:0032228]; Rho protein signal transduction [GO:0007266]; small GTPase mediated signal transduction [GO:0007264]	cell projection [GO:0042995]; cytoplasm [GO:0005737]; cytoplasmic side of plasma membrane [GO:0009898]; cytoplasmic vesicle [GO:0031410]; cytosol [GO:0005829]; integral component of membrane [GO:0016021]; neuronal cell body [GO:0043025]; plasma membrane [GO:0005886]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; protein kinase binding [GO:0019901]	GO:0000132; GO:0001764; GO:0002119; GO:0003924; GO:0005525; GO:0005737; GO:0005829; GO:0005886; GO:0006915; GO:0007264; GO:0007266; GO:0007369; GO:0008045; GO:0009898; GO:0010171; GO:0010172; GO:0016021; GO:0016477; GO:0019901; GO:0030036; GO:0030334; GO:0031103; GO:0031410; GO:0032228; GO:0033563; GO:0042995; GO:0043025; GO:0043652; GO:0045138; GO:0048598; GO:0048812; GO:0048846; GO:0050764; GO:0070986; GO:0097628; GO:1901076; GO:1903356	reviewed	Caenorhabditis elegans	0	705	0	0	2	0	0	0	0	0	1	0	0	0	0
185	TRINITY_DN293348_c0_g2	22.9111260509861	9.98055969097464	271.665199686235	3.04524310007773e-14	2.96031643818987e-12	Q14012	TRINITY_DN293348_c0_g2_i1	3.2e-62	Calcium/calmodulin-dependent protein kinase type 1 (EC 2.7.11.17) (CaM kinase I) (CaM-KI) (CaM kinase I alpha) (CaMKI-alpha)	cell cycle [GO:0007049]; negative regulation of protein binding [GO:0032091]; nucleocytoplasmic transport [GO:0006913]; positive regulation of dendritic spine development [GO:0060999]; positive regulation of muscle cell differentiation [GO:0051149]; positive regulation of neuron projection development [GO:0010976]; positive regulation of peptidyl-serine phosphorylation [GO:0033138]; positive regulation of protein acetylation [GO:1901985]; positive regulation of protein export from nucleus [GO:0046827]; positive regulation of protein serine/threonine kinase activity [GO:0071902]; positive regulation of synapse structural plasticity [GO:0051835]; positive regulation of syncytium formation by plasma membrane fusion [GO:0060143]; positive regulation of transcription by RNA polymerase II [GO:0045944]; protein phosphorylation [GO:0006468]; regulation of muscle cell differentiation [GO:0051147]; regulation of protein binding [GO:0043393]; regulation of protein localization [GO:0032880]; signal transduction [GO:0007165]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutamatergic synapse [GO:0098978]; nucleus [GO:0005634]; postsynaptic density [GO:0014069]	ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]	GO:0004683; GO:0005516; GO:0005524; GO:0005634; GO:0005737; GO:0005829; GO:0006468; GO:0006913; GO:0007049; GO:0007165; GO:0010976; GO:0014069; GO:0032091; GO:0032880; GO:0033138; GO:0043393; GO:0045944; GO:0046827; GO:0051147; GO:0051149; GO:0051835; GO:0060143; GO:0060999; GO:0071902; GO:0098978; GO:1901985	reviewed	Homo sapiens (Human)	1659	1255	1648	1451	1503	1341	665	0	0	0	1	1	0	6	0
186	TRINITY_DN293349_c0_g1	-4.99826939877638	7.52023682641155	19.3410310027492	0.000208279643797706	0.00232425702515497	Q945S8	TRINITY_DN293349_c0_g1_i2	9.7e-74	Histone-lysine N-methyltransferase ASHH3 (EC 2.1.1.43) (ASH1 homolog 3) (Protein SET DOMAIN GROUP 7)	regulation of transcription, DNA-templated [GO:0006355]	chromatin [GO:0000785]; chromosome, centromeric region [GO:0000775]; endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; plasmodesma [GO:0009506]	histone methyltransferase activity (H3-K36 specific) [GO:0046975]; protein-lysine N-methyltransferase activity [GO:0016279]	GO:0000775; GO:0000785; GO:0005634; GO:0005783; GO:0006355; GO:0009506; GO:0016279; GO:0046975	reviewed	Arabidopsis thaliana (Mouse-ear cress)	86	54	62	10	2	16	23	730	462	461	365	185	142	267	199
187	TRINITY_DN293350_c0_g1	23.0907935052753	8.72363013035041	238.127747758594	1.38746733710324e-12	6.60647908974544e-11	O68965	TRINITY_DN293350_c0_g1_i1	3.4e-30	Inositol 2-dehydrogenase (EC 1.1.1.18) (Myo-inositol 2-dehydrogenase) (MI-dehydrogenase)			inositol 2-dehydrogenase activity [GO:0050112]	GO:0050112	reviewed	Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)	497	2199	1224	249	237	237	173	0	0	0	2	0	0	0	0
188	TRINITY_DN293383_c0_g1	15.7511621531288	5.27209405286017	20.6225832563527	0.000198041896169458	0.00222887152234353	P91128	TRINITY_DN293383_c0_g1_i1	1.1e-59	60S ribosomal protein L13	translation [GO:0006412]	cytosolic large ribosomal subunit [GO:0022625]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0006412; GO:0022625	reviewed	Caenorhabditis elegans	2	0	50	0	72	147	0	0	2	0	0	0	0	0	0
189	TRINITY_DN293385_c0_g1	15.0761670777859	5.31955178323381	22.210080849999	9.49327624992191e-05	0.00118474556425437	O01802	TRINITY_DN293385_c0_g1_i1	1e-72	60S ribosomal protein L7	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]	cytosolic large ribosomal subunit [GO:0022625]	RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]	GO:0000463; GO:0003723; GO:0003735; GO:0022625	reviewed	Caenorhabditis elegans	2	0	53	0	75	151	0	0	1	0	0	0	0	1	0
190	TRINITY_DN293394_c0_g1	16.8806103579611	5.51785593905498	23.0876474669452	0.000107323132231394	0.00131811545339748	P47991	TRINITY_DN293394_c0_g1_i1	3.2e-47	60S ribosomal protein L6	cytoplasmic translation [GO:0002181]; determination of adult lifespan [GO:0008340]; ribosomal large subunit assembly [GO:0000027]	cytosolic large ribosomal subunit [GO:0022625]; rough endoplasmic reticulum [GO:0005791]	RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]	GO:0000027; GO:0002181; GO:0003723; GO:0003735; GO:0005791; GO:0008340; GO:0022625	reviewed	Caenorhabditis elegans	1	0	57	0	90	177	0	0	1	0	0	0	0	0	0
191	TRINITY_DN293398_c2_g7	-4.47934847450798	11.0315118268057	17.8584417452819	0.000319845451909233	0.00332188481093649	P17614	TRINITY_DN293398_c2_g7_i1	5.5e-96	ATP synthase subunit beta, mitochondrial (EC 7.1.2.2)	ATP synthesis coupled proton transport [GO:0015986]	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) [GO:0000275]	ATPase activity [GO:0016887]; ATP binding [GO:0005524]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]	GO:0000275; GO:0005524; GO:0015986; GO:0016887; GO:0046933	reviewed	Nicotiana plumbaginifolia (Leadwort-leaved tobacco) (Tex-Mex tobacco)	777	200	481	382	129	243	612	6161	3004	2312	2104	7707	1304	4081	1578
192	TRINITY_DN293450_c1_g1	-6.53438463440036	7.54318477132784	19.0585677346363	0.00022572820373	0.00245944172435139	Q8LG10	TRINITY_DN293450_c1_g1_i6	5.1e-13	GATA transcription factor 15		nucleus [GO:0005634]	DNA-binding transcription factor activity [GO:0003700]; sequence-specific DNA binding [GO:0043565]; zinc ion binding [GO:0008270]	GO:0003700; GO:0005634; GO:0008270; GO:0043565	reviewed	Arabidopsis thaliana (Mouse-ear cress)	152	13	22	15	0	2	8	546	497	360	230	384	125	486	170
193	TRINITY_DN293455_c0_g1	20.0228159007345	8.342654480761	167.979027019934	4.58786624029795e-12	1.86834815970028e-10	P11883	TRINITY_DN293455_c0_g1_i1	3.1e-91	Aldehyde dehydrogenase, dimeric NADP-preferring (EC 1.2.1.5) (Aldehyde dehydrogenase family 3 member A1) (HTC-ALDH) (Tumor-associated aldehyde dehydrogenase)	aging [GO:0007568]; cellular aldehyde metabolic process [GO:0006081]; oxidation-reduction process [GO:0055114]; positive regulation of cell population proliferation [GO:0008284]; response to cAMP [GO:0051591]; response to drug [GO:0042493]; response to glucocorticoid [GO:0051384]; response to hypoxia [GO:0001666]; response to nutrient [GO:0007584]; response to organic cyclic compound [GO:0014070]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	3-chloroallyl aldehyde dehydrogenase activity [GO:0004028]; alcohol dehydrogenase (NADP+) activity [GO:0008106]; aldehyde dehydrogenase (NAD) activity [GO:0004029]; aldehyde dehydrogenase [NAD(P)+] activity [GO:0004030]; benzaldehyde dehydrogenase (NAD+) activity [GO:0018479]	GO:0001666; GO:0004028; GO:0004029; GO:0004030; GO:0005737; GO:0005783; GO:0005829; GO:0005886; GO:0006081; GO:0007568; GO:0007584; GO:0008106; GO:0008284; GO:0014070; GO:0016021; GO:0018479; GO:0042493; GO:0051384; GO:0051591; GO:0055114	reviewed	Rattus norvegicus (Rat)	744	390	286	477	458	472	242	0	1	0	4	0	0	1	0
194	TRINITY_DN293455_c0_g2	8.56460955167824	1.64709267509814	12.8218456576832	0.00229738198213084	0.0175565363819628	P11883	TRINITY_DN293455_c0_g2_i1	5.4e-31	Aldehyde dehydrogenase, dimeric NADP-preferring (EC 1.2.1.5) (Aldehyde dehydrogenase family 3 member A1) (HTC-ALDH) (Tumor-associated aldehyde dehydrogenase)	aging [GO:0007568]; cellular aldehyde metabolic process [GO:0006081]; oxidation-reduction process [GO:0055114]; positive regulation of cell population proliferation [GO:0008284]; response to cAMP [GO:0051591]; response to drug [GO:0042493]; response to glucocorticoid [GO:0051384]; response to hypoxia [GO:0001666]; response to nutrient [GO:0007584]; response to organic cyclic compound [GO:0014070]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	3-chloroallyl aldehyde dehydrogenase activity [GO:0004028]; alcohol dehydrogenase (NADP+) activity [GO:0008106]; aldehyde dehydrogenase (NAD) activity [GO:0004029]; aldehyde dehydrogenase [NAD(P)+] activity [GO:0004030]; benzaldehyde dehydrogenase (NAD+) activity [GO:0018479]	GO:0001666; GO:0004028; GO:0004029; GO:0004030; GO:0005737; GO:0005783; GO:0005829; GO:0005886; GO:0006081; GO:0007568; GO:0007584; GO:0008106; GO:0008284; GO:0014070; GO:0016021; GO:0018479; GO:0042493; GO:0051384; GO:0051591; GO:0055114	reviewed	Rattus norvegicus (Rat)	1	0	3	1	0	2	2	0	0	0	0	0	0	0	0
195	TRINITY_DN293456_c0_g2	-10.8788219861365	7.10556006664936	40.9999029095633	1.54791382899287e-06	2.75332948317985e-05	Q67YI6	TRINITY_DN293456_c0_g2_i1	2.4e-40	RING-H2 finger protein ATL65 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL65)	protein ubiquitination [GO:0016567]	chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; vesicle [GO:0031982]	metal ion binding [GO:0046872]; transferase activity [GO:0016740]; ubiquitin protein ligase binding [GO:0031625]	GO:0009507; GO:0016021; GO:0016567; GO:0016740; GO:0031625; GO:0031982; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)	6	0	4	4	4	3	3	153	381	232	299	545	64	304	79
196	TRINITY_DN293483_c0_g1	4.90329760854589	5.8916611545411	10.6623840292055	0.00339813745837776	0.02378727601884	O13672	TRINITY_DN293483_c0_g1_i1	1e-64	60S ribosomal protein L8 (L4) (L7A)	cytoplasmic translation [GO:0002181]; maturation of LSU-rRNA [GO:0000470]	cytosolic large ribosomal subunit [GO:0022625]	RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]	GO:0000470; GO:0002181; GO:0003723; GO:0003735; GO:0022625	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	8	63	55	107	192	47	39	47	4	31	31	6	37	8	3
197	TRINITY_DN293491_c0_g1	-9.42067679787695	4.04456730478155	15.1592939279357	0.000731150661669974	0.00675495909811514	Q9LDR4	TRINITY_DN293491_c0_g1_i1	1.4e-17	Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol reductase) (Protein FACKEL) (Sterol C14-reductase)	sterol biosynthetic process [GO:0016126]	integral component of endoplasmic reticulum membrane [GO:0030176]	delta14-sterol reductase activity [GO:0050613]; NADP binding [GO:0050661]	GO:0016126; GO:0030176; GO:0050613; GO:0050661	reviewed	Arabidopsis thaliana (Mouse-ear cress)	3	0	0	0	0	0	1	63	16	26	66	13	7	28	21
198	TRINITY_DN293492_c0_g1	19.5318513143244	5.84043127824905	87.1175781211352	4.1445676959073e-08	9.82640687663739e-07	Q03957	TRINITY_DN293492_c0_g1_i1	6.3e-25	CTD kinase subunit alpha (CTDK-I subunit alpha) (EC 2.7.11.23) (CTD kinase 58 kDa subunit) (CTD kinase subunit 1)	cellular response to DNA damage stimulus [GO:0006974]; mRNA 3'-end processing [GO:0031124]; peptidyl-serine phosphorylation [GO:0018105]; phosphorylation of RNA polymerase II C-terminal domain [GO:0070816]; positive regulation of DNA-templated transcription, elongation [GO:0032786]; positive regulation of transcription by RNA polymerase I [GO:0045943]; positive regulation of transcription by RNA polymerase II [GO:0045944]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; positive regulation of translational fidelity [GO:0045903]; protein phosphorylation [GO:0006468]; transcription elongation from RNA polymerase II promoter [GO:0006368]; translational initiation [GO:0006413]	chromosome [GO:0005694]; CTDK-1 complex [GO:0070692]; cyclin/CDK positive transcription elongation factor complex [GO:0008024]; cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; cytoplasm [GO:0005737]; nuclear chromatin [GO:0000790]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]	ATP binding [GO:0005524]; cyclin binding [GO:0030332]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein kinase activity [GO:0004672]; RNA polymerase II CTD heptapeptide repeat kinase activity [GO:0008353]; transcription factor binding [GO:0008134]; transcription regulatory region DNA binding [GO:0044212]	GO:0000307; GO:0000790; GO:0004672; GO:0004693; GO:0005524; GO:0005634; GO:0005654; GO:0005694; GO:0005730; GO:0005737; GO:0006368; GO:0006413; GO:0006468; GO:0006974; GO:0008024; GO:0008134; GO:0008353; GO:0018105; GO:0030332; GO:0031124; GO:0032786; GO:0032968; GO:0044212; GO:0045903; GO:0045943; GO:0045944; GO:0070692; GO:0070816	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	84	90	45	81	91	98	43	0	0	0	0	0	0	0	0
199	TRINITY_DN293493_c3_g1	4.32097080498161	14.4723437891391	20.8070031101383	0.000138446068049305	0.0016354602313458	P46421	TRINITY_DN293493_c3_g1_i1	4.9e-11	Glutathione S-transferase U5 (AtGSTU5) (EC 2.5.1.18) (AtGSTU1) (GST class-tau member 5) (Glutathione S-transferase 103-1A)	glutathione metabolic process [GO:0006749]; response to oxidative stress [GO:0006979]; toxin catabolic process [GO:0009407]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]	glutathione binding [GO:0043295]; glutathione transferase activity [GO:0004364]	GO:0004364; GO:0005737; GO:0005829; GO:0005886; GO:0006749; GO:0006979; GO:0009407; GO:0009506; GO:0043295	reviewed	Arabidopsis thaliana (Mouse-ear cress)	22510	29265	15163	12490	14715	9986	68739	15133	6792	15362	5011	10122	6947	7190	8675
200	TRINITY_DN293493_c3_g4	6.60628387504287	1.64054042120669	9.16373575050429	0.00664750173380391	0.0404204673204776	Q9FUS8	TRINITY_DN293493_c3_g4_i1	7.6e-30	Glutathione S-transferase U17 (AtGSTU17) (EC 2.5.1.18) (GST class-tau member 17) (Glutathione S-transferase 30) (Protein EARLY RESPONSIVE TO DEHYDRATION 9)	de-etiolation [GO:0009704]; glutathione metabolic process [GO:0006749]; lateral root development [GO:0048527]; negative regulation of response to water deprivation [GO:0080148]; regulation of growth [GO:0040008]; response to growth hormone [GO:0060416]; response to karrikin [GO:0080167]; response to salt stress [GO:0009651]; toxin catabolic process [GO:0009407]	chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]	glutathione transferase activity [GO:0004364]	GO:0004364; GO:0005737; GO:0005829; GO:0006749; GO:0009407; GO:0009507; GO:0009651; GO:0009704; GO:0040008; GO:0048527; GO:0060416; GO:0080148; GO:0080167	reviewed	Arabidopsis thaliana (Mouse-ear cress)	1	1	1	0	2	0	5	0	0	0	0	0	1	0	0
201	TRINITY_DN293493_c3_g6	4.16044720394213	7.15330364339536	8.56821676870267	0.00757072033263618	0.0450603450567481	O23760	TRINITY_DN293493_c3_g6_i1	1e-14	Caffeic acid 3-O-methyltransferase (CAOMT) (COMT) (EC 2.1.1.68) (S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase)	lignin biosynthetic process [GO:0009809]		caffeate O-methyltransferase activity [GO:0047763]; protein dimerization activity [GO:0046983]	GO:0009809; GO:0046983; GO:0047763	reviewed	Clarkia breweri (Fairy fans) (Eucharidium breweri)	199	106	149	60	58	130	267	32	45	78	72	167	16	8	23
202	TRINITY_DN293494_c0_g1	18.6418925743841	8.12299715665205	189.049571645376	1.36646020251848e-12	6.60647908974544e-11	Q8GYD2	TRINITY_DN293494_c0_g1_i1	4.1e-21	Meiotic nuclear division protein 1 homolog (AtMND1) (Meiotic nuclear division 1-like protein)	double-strand break repair [GO:0006302]; embryo sac development [GO:0009553]; pollen development [GO:0009555]; reciprocal meiotic recombination [GO:0007131]; response to ionizing radiation [GO:0010212]	nucleolus [GO:0005730]	double-stranded DNA binding [GO:0003690]	GO:0003690; GO:0005730; GO:0006302; GO:0007131; GO:0009553; GO:0009555; GO:0010212	reviewed	Arabidopsis thaliana (Mouse-ear cress)	405	782	213	416	467	396	212	0	0	2	2	1	0	1	1
203	TRINITY_DN293499_c0_g1	-11.7445216224371	9.24847103426427	93.6085820827732	1.40106717600416e-09	3.87169902654722e-08	Q0JF58	TRINITY_DN293499_c0_g1_i1	1.5e-193	Protein argonaute 4B (OsAGO4b)	gene silencing by RNA [GO:0031047]		nucleic acid binding [GO:0003676]	GO:0003676; GO:0031047	reviewed	Oryza sativa subsp. japonica (Rice)	51	8	12	4	2	5	8	3328	2436	1767	1082	617	215	1019	637
204	TRINITY_DN293682_c3_g2	20.9458956797956	11.1805571786185	172.366506380561	3.52714415641126e-12	1.4752042113639e-10	A9PEK8	TRINITY_DN293682_c3_g2_i1	4.6e-153	S-adenosylmethionine synthase 3 (AdoMet synthase 3) (EC 2.5.1.6) (Methionine adenosyltransferase 3) (MAT 3)	one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]	cytosol [GO:0005829]	ATP binding [GO:0005524]; metal ion binding [GO:0046872]; methionine adenosyltransferase activity [GO:0004478]	GO:0004478; GO:0005524; GO:0005829; GO:0006556; GO:0006730; GO:0046872	reviewed	Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)	2286	3794	1646	2670	3983	4651	2673	1	0	2	8	1	0	16	0
205	TRINITY_DN293689_c0_g1	11.3024848177983	5.21208336807217	18.8929040343166	0.000236698950744321	0.002523726311151	Q8ISN9	TRINITY_DN293689_c0_g1_i1	5.2e-14	40S ribosomal protein S25		ribosome [GO:0005840]		GO:0005840	reviewed	Branchiostoma belcheri (Amphioxus)	11	8	96.76	1	3	118	2	1	0	2	4	1	3	0	1
206	TRINITY_DN293689_c0_g3	8.91000512894698	5.14036897574877	13.2659239277974	0.00135919404620285	0.0111880467366963	Q8ISN9	TRINITY_DN293689_c0_g3_i1	1.2e-14	40S ribosomal protein S25		ribosome [GO:0005840]		GO:0005840	reviewed	Branchiostoma belcheri (Amphioxus)	19	5	197.24	0	6	19	7	1	0	5	0	2	4	0	9
207	TRINITY_DN293691_c0_g1	-11.3086031972694	12.3178964813271	64.4236519913003	4.0126393358098e-08	9.70243651900884e-07	Q55DY8	TRINITY_DN293691_c0_g1_i2	8.1e-45	Mitoferrin (Mitochondrial substrate carrier family protein F)	iron import into the mitochondrion [GO:0048250]	integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]	iron ion transmembrane transporter activity [GO:0005381]	GO:0005381; GO:0005739; GO:0005743; GO:0016021; GO:0048250	reviewed	Dictyostelium discoideum (Slime mold)	1297	78	179	14	26	31	23	12454	12013	9454	7059	9096	1806	9951	18132
208	TRINITY_DN293813_c0_g1	-2.55485228538728	8.67326887152513	10.4768758101015	0.00363894806264484	0.0251958484426975	Q10G56	TRINITY_DN293813_c0_g1_i1	6.7e-196	Ornithine aminotransferase, mitochondrial (EC 2.6.1.13) (Ornithine delta-aminotransferase) (Ornithine--oxo-acid aminotransferase)	arginine catabolic process to glutamate [GO:0019544]; arginine catabolic process to proline via ornithine [GO:0010121]; defense response to bacterium, incompatible interaction [GO:0009816]; hyperosmotic salinity response [GO:0042538]; L-proline biosynthetic process [GO:0055129]; mitochondrion localization [GO:0051646]; ornithine catabolic process [GO:0006593]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to brassinosteroid [GO:0009741]; response to flooding [GO:0009413]; response to heat [GO:0009408]; response to jasmonic acid [GO:0009753]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]	cytoplasm [GO:0005737]; mitochondrial matrix [GO:0005759]	ornithine-oxo-acid transaminase activity [GO:0004587]; pyridoxal phosphate binding [GO:0030170]; zinc ion binding [GO:0008270]	GO:0004587; GO:0005737; GO:0005759; GO:0006593; GO:0006979; GO:0008270; GO:0009408; GO:0009413; GO:0009414; GO:0009651; GO:0009733; GO:0009737; GO:0009741; GO:0009753; GO:0009816; GO:0010121; GO:0019544; GO:0030170; GO:0042538; GO:0051646; GO:0055129	reviewed	Oryza sativa subsp. japonica (Rice)	289	302	172	105	41	101	90	1011	778	581	237	512	599	793	639
209	TRINITY_DN293818_c2_g1	6.51282629949086	1.38168055944787	11.1732238890493	0.00384990310770916	0.0263616153061059	A5H8G4	TRINITY_DN293818_c2_g1_i1	4.6e-18	Peroxidase 1 (EC 1.11.1.7) (Plasma membrane-bound peroxidase 1) (pmPOX1)	hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979]	extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; vacuole [GO:0005773]	heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]	GO:0004601; GO:0005576; GO:0005773; GO:0006979; GO:0009505; GO:0009506; GO:0020037; GO:0042744; GO:0046872	reviewed	Zea mays (Maize)	0	1	1	1	2	0	1	0	0	0	0	0	0	0	0
210	TRINITY_DN293818_c2_g2	7.74787614226654	6.26703010507726	13.6203362934446	0.00120692393456847	0.0102340536369573	A5H8G4	TRINITY_DN293818_c2_g2_i1	4.8e-90	Peroxidase 1 (EC 1.11.1.7) (Plasma membrane-bound peroxidase 1) (pmPOX1)	hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979]	extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; vacuole [GO:0005773]	heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]	GO:0004601; GO:0005576; GO:0005773; GO:0006979; GO:0009505; GO:0009506; GO:0020037; GO:0042744; GO:0046872	reviewed	Zea mays (Maize)	51	51	92	19	126	178	43	1	8	1	2	90	0	3	2
211	TRINITY_DN293818_c3_g2	-9.49878072063545	4.93556153178881	19.1865180367516	0.000217634454952849	0.00240516165340554	A5PJZ1	TRINITY_DN293818_c3_g2_i1	1.9e-11	Calcium-binding mitochondrial carrier protein SCaMC-1 (Small calcium-binding mitochondrial carrier protein 1) (Solute carrier family 25 member 24)	cellular response to calcium ion [GO:0071277]; cellular response to oxidative stress [GO:0034599]; mitochondrial transport [GO:0006839]; regulation of cell death [GO:0010941]	integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]	ATP transmembrane transporter activity [GO:0005347]; calcium ion binding [GO:0005509]	GO:0005347; GO:0005509; GO:0005743; GO:0006839; GO:0010941; GO:0016021; GO:0034599; GO:0071277	reviewed	Bos taurus (Bovine)	3	0	0	2	1	2	0	65	67	59	76	19	78	28	77
212	TRINITY_DN293826_c5_g4	9.70209622336566	2.01498039492376	13.9435803998751	0.00164636598021107	0.0131327389400857	P40615	TRINITY_DN293826_c5_g4_i1	2.8e-40	H/ACA ribonucleoprotein complex subunit DKC1 (EC 5.4.99.-) (Dyskerin) (Nopp140-associated protein of 57 kDa) (Nucleolar protein NAP57) (Nucleolar protein family A member 4) (snoRNP protein DKC1)	box H/ACA snoRNA 3'-end processing [GO:0000495]; enzyme-directed rRNA pseudouridine synthesis [GO:0000455]; mRNA pseudouridine synthesis [GO:1990481]; positive regulation of cell population proliferation [GO:0008284]; rRNA pseudouridine synthesis [GO:0031118]; snoRNA guided rRNA pseudouridine synthesis [GO:0000454]; snRNA pseudouridine synthesis [GO:0031120]; telomere maintenance via telomerase [GO:0007004]	box H/ACA snoRNP complex [GO:0031429]; Cajal body [GO:0015030]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; telomerase holoenzyme complex [GO:0005697]	pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]	GO:0000454; GO:0000455; GO:0000495; GO:0003723; GO:0005654; GO:0005697; GO:0005730; GO:0007004; GO:0008284; GO:0009982; GO:0015030; GO:0031118; GO:0031120; GO:0031429; GO:1990481	reviewed	Rattus norvegicus (Rat)	12	1	3	0	0	2	1	0	0	0	0	0	0	0	0
213	TRINITY_DN293895_c0_g1	19.7142906111476	5.8635249522504	86.9059929355302	4.2177073630474e-08	9.88924567320582e-07	Q53RK8	TRINITY_DN293895_c0_g1_i1	3.9e-91	DEAD-box ATP-dependent RNA helicase 21 (EC 3.6.4.13)	mRNA processing [GO:0006397]; RNA splicing [GO:0008380]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; helicase activity [GO:0004386]; RNA binding [GO:0003723]	GO:0003723; GO:0004386; GO:0005524; GO:0005634; GO:0005737; GO:0006397; GO:0008380	reviewed	Oryza sativa subsp. japonica (Rice)	88	92	148	37	80	49	49	0	0	0	0	0	0	0	0
214	TRINITY_DN294142_c0_g1	-9.67825454337403	2.62194586222961	9.03812002898735	0.00756918869884784	0.0450603450567481	Q59536	TRINITY_DN294142_c0_g1_i1	6e-147	Protease 2 (EC 3.4.21.83) (Oligopeptidase B) (Protease II)			serine-type endopeptidase activity [GO:0004252]; serine-type exopeptidase activity [GO:0070008]	GO:0004252; GO:0070008	reviewed	Moraxella lacunata	0	0	0	0	0	0	0	53	0	30	1	0	2	2	0
215	TRINITY_DN294161_c0_g1	12.8366673520102	2.83262462655799	28.1809134235532	5.74014073404954e-05	0.000746459477810224	Q9LZQ9	TRINITY_DN294161_c0_g1_i1	9.7e-103	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP43)	mRNA processing [GO:0006397]; RNA splicing [GO:0008380]	cytosol [GO:0005829]; nucleolus [GO:0005730]; spliceosomal complex [GO:0005681]	ATP binding [GO:0005524]; ATP-dependent 3'-5' RNA helicase activity [GO:0034459]; RNA binding [GO:0003723]	GO:0003723; GO:0005524; GO:0005681; GO:0005730; GO:0005829; GO:0006397; GO:0008380; GO:0034459	reviewed	Arabidopsis thaliana (Mouse-ear cress)	13	8	3	7	12	7	3	0	0	0	0	0	0	0	0
216	TRINITY_DN294161_c0_g2	18.4175935545193	6.85700603802291	115.985268563066	1.82424981299403e-10	6.07102491528659e-09	O22899	TRINITY_DN294161_c0_g2_i1	6.2e-212	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP43)	mRNA processing [GO:0006397]; RNA splicing [GO:0008380]	chloroplast envelope [GO:0009941]; membrane [GO:0016020]; spliceosomal complex [GO:0005681]	ATP binding [GO:0005524]; ATP-dependent 3'-5' RNA helicase activity [GO:0034459]; RNA binding [GO:0003723]	GO:0003723; GO:0005524; GO:0005681; GO:0006397; GO:0008380; GO:0009941; GO:0016020; GO:0034459	reviewed	Arabidopsis thaliana (Mouse-ear cress)	99	109	65	176	254	233	115	1	0	0	0	0	0	1	0
217	TRINITY_DN294184_c0_g1	14.6352862768362	3.858161774867	18.4685797513423	0.000485697054696145	0.00469760120088928	Q9NL98	TRINITY_DN294184_c0_g1_i1	3.4e-59	Peroxiredoxin (EC 1.11.1.15) (AsPrx) (Thioredoxin peroxidase)	cell redox homeostasis [GO:0045454]; response to oxidative stress [GO:0006979]	cell [GO:0005623]	antioxidant activity [GO:0016209]; peroxidase activity [GO:0004601]; thioredoxin peroxidase activity [GO:0008379]	GO:0004601; GO:0005623; GO:0006979; GO:0008379; GO:0016209; GO:0045454	reviewed	Ascaris suum (Pig roundworm) (Ascaris lumbricoides)	1	0	16	0	28	51	0	0	0	0	0	0	0	0	0
218	TRINITY_DN294185_c1_g1	3.57291908020892	7.77895686112111	9.709010895868	0.00485527514519807	0.0314373986911883	Q09473	TRINITY_DN294185_c1_g1_i1	7.6e-30	ER lumen protein-retaining receptor erd-2.2	endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; protein retention in ER lumen [GO:0006621]; protein transport [GO:0015031]	cis-Golgi network [GO:0005801]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]	ER retention sequence binding [GO:0046923]	GO:0005783; GO:0005789; GO:0005794; GO:0005801; GO:0006621; GO:0006888; GO:0015031; GO:0016021; GO:0046923	reviewed	Caenorhabditis elegans	415	341	237	45	289	103	252	118	233	136	12	115	262	26	59
219	TRINITY_DN294187_c0_g1	-5.51838404802613	7.3673898350215	25.254970473329	4.36277647931661e-05	0.000584536502315364	Q0DST9	TRINITY_DN294187_c0_g1_i2	1.5e-05	RNA pseudouridine synthase 5 (EC 5.4.99.-) (RNA pseudouridylate synthase 5) (RNA-uridine isomerase 5)	pseudouridine synthesis [GO:0001522]		pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]	GO:0001522; GO:0003723; GO:0009982	reviewed	Oryza sativa subsp. japonica (Rice)	42	43	27	37	4	17	14	452	382	449	227	189	246	415	205
220	TRINITY_DN294189_c0_g1	10.066085746026	3.37573394809292	16.169703349977	0.000532584060990811	0.00507183898082019	Q487Z6	TRINITY_DN294189_c0_g1_i1	1.1e-146	50S ribosomal protein L2	translation [GO:0006412]	large ribosomal subunit [GO:0015934]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; transferase activity [GO:0016740]	GO:0003735; GO:0006412; GO:0015934; GO:0016740; GO:0019843	reviewed	Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)	6	16	4	0	3	23	19	0	1	0	1	0	0	0	1
221	TRINITY_DN294194_c0_g1	20.9185765199175	9.39786060181739	191.80822096975	1.17666394215895e-12	5.87383048545475e-11	Q58DA0	TRINITY_DN294194_c0_g1_i1	3.5e-27	26S proteasome non-ATPase regulatory subunit 4 (26S proteasome regulatory subunit RPN10)	proteasome assembly [GO:0043248]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]	cytosol [GO:0005829]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; proteasome accessory complex [GO:0022624]; proteasome regulatory particle, base subcomplex [GO:0008540]	polyubiquitin modification-dependent protein binding [GO:0031593]	GO:0005634; GO:0005654; GO:0005829; GO:0008540; GO:0022624; GO:0031593; GO:0043161; GO:0043248	reviewed	Bos taurus (Bovine)	1145	684	2000	622	697	604	396	0	0	0	3	2	0	3	0
222	TRINITY_DN294194_c0_g2	22.6343581370699	8.58798150317641	250.610109802262	8.63114661674661e-13	4.53254956583416e-11	Q9U5N0	TRINITY_DN294194_c0_g2_i1	8.8e-28	V-type proton ATPase subunit H (V-ATPase subunit H) (Vacuolar proton pump subunit H)	ATP hydrolysis coupled proton transport [GO:0015991]	vacuolar proton-transporting V-type ATPase, V1 domain [GO:0000221]	proton-transporting ATPase activity, rotational mechanism [GO:0046961]	GO:0000221; GO:0015991; GO:0046961	reviewed	Manduca sexta (Tobacco hawkmoth) (Tobacco hornworm)	634	510	325	605	637	594	349	0	0	1	2	0	0	0	0
223	TRINITY_DN294619_c0_g2	-7.13899619687234	5.2551310731213	17.40515599816	0.000365911775635492	0.003716585245272	Q9SJA4	TRINITY_DN294619_c0_g2_i2	4.2e-79	Probable cyclic nucleotide-gated ion channel 14 (Cyclic nucleotide- and calmodulin-regulated ion channel 14)		integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]	GO:0005249; GO:0005516; GO:0005886; GO:0016021; GO:0030552; GO:0030553	reviewed	Arabidopsis thaliana (Mouse-ear cress)	7	4	2	5	1	1	4	116	80	88	64	106	28	52	29
224	TRINITY_DN294650_c0_g4	5.04339220878307	10.4085729382305	44.6529740636401	8.06311538530043e-07	1.47664746257425e-05	Q52QH4	TRINITY_DN294650_c0_g4_i1	1.9e-68	NAC domain-containing protein 68 (ONAC068) (OsNAC4)	regulation of transcription, DNA-templated [GO:0006355]	nucleus [GO:0005634]	DNA binding [GO:0003677]	GO:0003677; GO:0005634; GO:0006355	reviewed	Oryza sativa subsp. japonica (Rice)	1259	538	940	862	4151	1269	2228	379	314	522	316	537	443	624	235
225	TRINITY_DN294652_c0_g3	19.2462192790914	5.7388729467713	87.3450707500382	4.06750651946952e-08	9.75886254089781e-07	Q5U780	TRINITY_DN294652_c0_g3_i1	6.1e-43	Lipase (EC 3.1.1.3) (Lip 42) (Thermostable organic solvent tolerant lipase) (Triacylglycerol hydrolase)	lipid catabolic process [GO:0016042]	extracellular region [GO:0005576]	metal ion binding [GO:0046872]; triglyceride lipase activity [GO:0004806]	GO:0004806; GO:0005576; GO:0016042; GO:0046872	reviewed	Bacillus sp.	127	212	99	49	51	25	22	0	0	0	0	0	0	0	0
226	TRINITY_DN294655_c3_g1	-3.37601942783284	7.63336390829844	11.302233968623	0.0026925557431732	0.0199843166070049	Q84WV9	TRINITY_DN294655_c3_g1_i1	6.4e-73	Glutaminyl-peptide cyclotransferase (EC 2.3.2.5) (Glutaminyl cyclase)	peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase [GO:0017186]	endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	glutaminyl-peptide cyclotransferase activity [GO:0016603]	GO:0005789; GO:0005886; GO:0016021; GO:0016603; GO:0017186	reviewed	Arabidopsis thaliana (Mouse-ear cress)	112	77.6	114.98	39	9	28	37.6	407	327	352.77	379	273.82	205.18	390.46	245.44
227	TRINITY_DN294655_c4_g1	-10.2093478012498	9.47692405469667	46.7502167613142	5.63529074272324e-07	1.06348932004442e-05	A7NVJ4	TRINITY_DN294655_c4_g1_i1	1.4e-59	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase subunit M) (NDH subunit M) (NDH-M) (NADH-plastoquinone oxidoreductase subunit M)		chloroplast thylakoid membrane [GO:0009535]	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [GO:0016655]; quinone binding [GO:0048038]	GO:0009535; GO:0016655; GO:0048038	reviewed	Vitis vinifera (Grape)	304	14	19	8	0	4	6	2961	1715	1563	714	1095	652	2903	553
228	TRINITY_DN294655_c4_g2	-7.80112785205693	6.34837742004176	21.8189159426557	0.000105328306471432	0.00129876935668958	A7NVJ4	TRINITY_DN294655_c4_g2_i1	1.3e-11	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase subunit M) (NDH subunit M) (NDH-M) (NADH-plastoquinone oxidoreductase subunit M)		chloroplast thylakoid membrane [GO:0009535]	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [GO:0016655]; quinone binding [GO:0048038]	GO:0009535; GO:0016655; GO:0048038	reviewed	Vitis vinifera (Grape)	19	2	11	5	0	2	4	137	217	176	234	115	66	202	106
229	TRINITY_DN294657_c0_g2	18.8143402316848	5.43982444675793	75.4398974545611	1.15365731430699e-07	2.42182603531092e-06	Q63584	TRINITY_DN294657_c0_g2_i1	8.5e-15	Transmembrane emp24 domain-containing protein 10 (21 kDa transmembrane-trafficking protein) (Transmembrane protein Tmp21) (p24 family protein delta-1) (p24delta1)	COPI-coated vesicle budding [GO:0035964]; endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; Golgi organization [GO:0007030]; intracellular protein transport [GO:0006886]; kidney development [GO:0001822]; protein complex oligomerization [GO:0051259]; regulated exocytosis [GO:0045055]; regulation of amyloid-beta formation [GO:1902003]; response to alkaloid [GO:0043279]; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum [GO:0006890]; vesicle targeting [GO:0006903]; vesicle targeting, to, from or within Golgi [GO:0048199]	cis-Golgi network [GO:0005801]; COPI-coated vesicle [GO:0030137]; COPII-coated ER to Golgi transport vesicle [GO:0030134]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; endoplasmic reticulum membrane [GO:0005789]; gamma-secretase complex [GO:0070765]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; melanosome [GO:0042470]; plasma membrane [GO:0005886]; secretory granule membrane [GO:0030667]; trans-Golgi network transport vesicle [GO:0030140]; transport vesicle membrane [GO:0030658]; zymogen granule membrane [GO:0042589]	protein-containing complex binding [GO:0044877]; syntaxin binding [GO:0019905]	GO:0000139; GO:0001822; GO:0005783; GO:0005789; GO:0005793; GO:0005794; GO:0005801; GO:0005886; GO:0006886; GO:0006888; GO:0006890; GO:0006903; GO:0007030; GO:0016021; GO:0019905; GO:0030134; GO:0030137; GO:0030140; GO:0030658; GO:0030667; GO:0033116; GO:0035964; GO:0042470; GO:0042589; GO:0043231; GO:0043279; GO:0044877; GO:0045055; GO:0048199; GO:0051259; GO:0070765; GO:1902003	reviewed	Rattus norvegicus (Rat)	81	69	42	53	65	58	38	0	0	0	0	0	0	0	0
230	TRINITY_DN294674_c6_g1	-7.03883440173173	8.70184640113905	51.2819127208952	2.69469099693148e-07	5.31214562770888e-06	Q8GY91	TRINITY_DN294674_c6_g1_i1	3e-87	Putative L-ascorbate peroxidase 6 (AtAPx08) (EC 1.11.1.11)	cellular response to oxidative stress [GO:0034599]; hydrogen peroxide catabolic process [GO:0042744]; response to reactive oxygen species [GO:0000302]; seed germination [GO:0009845]; seed maturation [GO:0010431]	cytosol [GO:0005829]	heme binding [GO:0020037]; L-ascorbate peroxidase activity [GO:0016688]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]	GO:0000302; GO:0004601; GO:0005829; GO:0009845; GO:0010431; GO:0016688; GO:0020037; GO:0034599; GO:0042744; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)	59	18	34	27	26	25	74	2073	1249	937	579	532	404	868	406
231	TRINITY_DN294747_c0_g1	-6.62223616810866	8.74667766624462	28.9896169550015	1.79962697988854e-05	0.00025729098168201	Q84MD6	TRINITY_DN294747_c0_g1_i1	7.5e-07	Tyrosine-protein phosphatase DSP2 (EC 3.1.3.48) (Protein PLANT AND FUNGI ATYPICAL DUAL-SPECIFICITY PHOSPHATASE 2) (AtPFA-DSP2)		cytoplasm [GO:0005737]	phosphatase activity [GO:0016791]; protein tyrosine phosphatase activity [GO:0004725]	GO:0004725; GO:0005737; GO:0016791	reviewed	Arabidopsis thaliana (Mouse-ear cress)	105	22	59	7	5	44	51	2045	1376	937	522	500	374	1103	375
232	TRINITY_DN294759_c0_g1	-4.36133556560501	10.0118916551094	24.9195372998923	4.74059117793793e-05	0.000632419383436116	Q93YN4	TRINITY_DN294759_c0_g1_i1	2.9e-164	Mitochondrial fission protein ELM1 (Protein ELONGATED MITOCHONDRIA 1)	mitochondrial fission [GO:0000266]	mitochondrial outer membrane [GO:0005741]		GO:0000266; GO:0005741	reviewed	Arabidopsis thaliana (Mouse-ear cress)	668	278	211	164	29	122	185	3193	2284	2279	1432	1188	1116	2055	1588
233	TRINITY_DN294767_c5_g1	9.5358362422735	3.05763182390952	10.1673247299516	0.00408355911308136	0.0274156517461753	P49210	TRINITY_DN294767_c5_g1_i1	4e-34	60S ribosomal protein L9	cytoplasmic translation [GO:0002181]	cytosolic large ribosomal subunit [GO:0022625]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0002181; GO:0003735; GO:0019843; GO:0022625	reviewed	Oryza sativa subsp. japonica (Rice)	1	0	19.23	0.29	1	22.01	0	0	0	0	2.01	0	0	1.27	0
234	TRINITY_DN294767_c5_g2	8.46932929424859	4.53784549789122	10.9565081374659	0.00305138238325325	0.0219628569213228	P49210	TRINITY_DN294767_c5_g2_i1	2.2e-44	60S ribosomal protein L9	cytoplasmic translation [GO:0002181]	cytosolic large ribosomal subunit [GO:0022625]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0002181; GO:0003735; GO:0019843; GO:0022625	reviewed	Oryza sativa subsp. japonica (Rice)	10	5	120	0	6	16	2	0	0	3	0	5	1	0	9
235	TRINITY_DN294772_c2_g5	8.76385106217548	4.20411731267557	15.5728516445995	0.000641496107683158	0.00599827931504342	Q9XGL4	TRINITY_DN294772_c2_g5_i1	8.2e-39	60S ribosomal protein L31	translation [GO:0006412]	ribosome [GO:0005840]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005840; GO:0006412	reviewed	Cyanophora paradoxa	69	24	36	1	1	10	10	3	3	1	4	2	0	0	0
236	TRINITY_DN294775_c0_g1	11.25330884973	4.94619177744359	19.523180464719	0.000197810812218931	0.00222887152234353	P79015	TRINITY_DN294775_c0_g1_i3	4.7e-18	60S ribosomal protein L32-A	cytoplasmic translation [GO:0002181]	cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; nucleus [GO:0005634]	structural constituent of ribosome [GO:0003735]	GO:0002181; GO:0003735; GO:0005634; GO:0005829; GO:0022625	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	8	8	117	1	5	63.24	7	0	0	2	1	3	1	0	3
237	TRINITY_DN294775_c0_g2	9.72987045063953	2.77622088589291	14.2485766330238	0.00118801034961113	0.0101013517363914	Q7RXY1	TRINITY_DN294775_c0_g2_i1	1.8e-20	60S ribosomal protein L32 (Cytoplasmic ribosomal protein-63)	translation [GO:0006412]	cytosolic large ribosomal subunit [GO:0022625]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0006412; GO:0022625	reviewed	Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)	6	1	24	0	2	5	1	0	0	0	0	1	0	0	1
238	TRINITY_DN294776_c2_g6	8.82023222056755	8.41465242677063	21.5797761565462	0.000112290592403073	0.00136143513824223	Q9ZPE7	TRINITY_DN294776_c2_g6_i1	7.2e-97	Protein EXORDIUM	response to brassinosteroid [GO:0009741]	apoplast [GO:0048046]; cell wall [GO:0005618]; extracellular space [GO:0005615]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]		GO:0005615; GO:0005618; GO:0005794; GO:0009505; GO:0009741; GO:0048046	reviewed	Arabidopsis thaliana (Mouse-ear cress)	255	29	32	262	289	259	1579	4	18	0	8	147	1	46	1
239	TRINITY_DN294778_c3_g3	-2.41375049493516	8.641798191237	10.3892769073289	0.00375911886739753	0.0259119663576734	Q84WK5	TRINITY_DN294778_c3_g3_i2	1.5e-27	Protein GID8 homolog		cytoplasm [GO:0005737]		GO:0005737	reviewed	Arabidopsis thaliana (Mouse-ear cress)	215	125	157	166	99	86	177	922	598	644	479	504	508	817	494
240	TRINITY_DN294779_c0_g2	-4.78321780666286	9.36551367626757	34.0058766167967	6.05225485825279e-06	9.80718784622637e-05	P35135	TRINITY_DN294779_c0_g2_i3	1.9e-82	Ubiquitin-conjugating enzyme E2-17 kDa (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme) (Ubiquitin carrier protein) (Ubiquitin-protein ligase)			ATP binding [GO:0005524]; ubiquitin conjugating enzyme activity [GO:0061631]	GO:0005524; GO:0061631	reviewed	Solanum lycopersicum (Tomato) (Lycopersicon esculentum)	223	88	134	155	50	81	116	1299	1051	1243	843	1181	779	1873	1154
241	TRINITY_DN294779_c1_g2	-2.18663603585208	10.8686011580523	8.27161099243842	0.00852596634324417	0.0491732496626579	Q94F47	TRINITY_DN294779_c1_g2_i1	1.5e-67	Ubiquitin-conjugating enzyme E2 28 (EC 2.3.2.23) (AtUBC9A) (E2 ubiquitin-conjugating enzyme 28) (Ubiquitin carrier protein 28)			ATP binding [GO:0005524]; ubiquitin conjugating enzyme activity [GO:0061631]	GO:0005524; GO:0061631	reviewed	Arabidopsis thaliana (Mouse-ear cress)	1051	488	1309	595	311	385	753	4247	3154.51	3217	2564	2322	2051	3095	2196
242	TRINITY_DN294779_c1_g9	5.68862460336299	5.40804600950434	13.6921941702015	0.00117838477048666	0.0100748642670061	Q94F47	TRINITY_DN294779_c1_g9_i1	7.3e-67	Ubiquitin-conjugating enzyme E2 28 (EC 2.3.2.23) (AtUBC9A) (E2 ubiquitin-conjugating enzyme 28) (Ubiquitin carrier protein 28)			ATP binding [GO:0005524]; ubiquitin conjugating enzyme activity [GO:0061631]	GO:0005524; GO:0061631	reviewed	Arabidopsis thaliana (Mouse-ear cress)	52	12	32	34	18.7	48	100	17	12	14	16	9	8	7	6
243	TRINITY_DN294781_c1_g1	15.9230936288582	4.38189691697591	18.787036091393	0.000448601624560109	0.00439374059497954	Q29361	TRINITY_DN294781_c1_g1_i1	1.8e-37	60S ribosomal protein L35	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; translation [GO:0006412]	cytoplasmic side of rough endoplasmic reticulum membrane [GO:0098556]; cytosolic large ribosomal subunit [GO:0022625]; large ribosomal subunit [GO:0015934]	mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]	GO:0000463; GO:0003729; GO:0003735; GO:0006412; GO:0015934; GO:0022625; GO:0098556	reviewed	Sus scrofa (Pig)	0	0	28	0	44	73	0	0	0	0	0	0	0	0	0
244	TRINITY_DN294781_c2_g1	6.41957217600829	4.52365468871963	10.9039733491554	0.00311035707954382	0.0223353948055409	Q3MHM7	TRINITY_DN294781_c2_g1_i3	2.7e-31	60S ribosomal protein L35	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; translation [GO:0006412]	cytosolic large ribosomal subunit [GO:0022625]	mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]	GO:0000463; GO:0003729; GO:0003735; GO:0006412; GO:0022625	reviewed	Bos taurus (Bovine)	68	47	43	1	0	11	19	13	5	7	6	2	4	1	2
245	TRINITY_DN294783_c0_g1	-4.33287630430365	8.79362824698841	21.8415322689996	0.000104694618352735	0.00129611937520686	Q8L4D8	TRINITY_DN294783_c0_g1_i1	5.7e-14	Protein IQ-DOMAIN 31		cytosol [GO:0005829]; microtubule associated complex [GO:0005875]; plasma membrane [GO:0005886]		GO:0005829; GO:0005875; GO:0005886	reviewed	Arabidopsis thaliana (Mouse-ear cress)	254	89	126	100	23	15	101	1543	1022	901	715	398	605	849	576
246	TRINITY_DN294787_c0_g3	-7.30067261187285	3.2452155648271	8.80635461563671	0.00733823728658471	0.044015202329418	F1MH24	TRINITY_DN294787_c0_g3_i1	1.6e-09	AP2-associated protein kinase 1 (EC 2.7.11.1) (Adaptor-associated kinase 1)	endocytosis [GO:0006897]; positive regulation of Notch signaling pathway [GO:0045747]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; protein stabilization [GO:0050821]; regulation of clathrin-dependent endocytosis [GO:2000369]; regulation of protein localization [GO:0032880]	cell leading edge [GO:0031252]; clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; extrinsic component of plasma membrane [GO:0019897]; nucleus [GO:0005634]; terminal bouton [GO:0043195]	AP-2 adaptor complex binding [GO:0035612]; ATP binding [GO:0005524]; Notch binding [GO:0005112]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005112; GO:0005524; GO:0005634; GO:0005905; GO:0006468; GO:0006897; GO:0019897; GO:0030136; GO:0031252; GO:0032880; GO:0035612; GO:0043195; GO:0045747; GO:0046777; GO:0050821; GO:2000369	reviewed	Bos taurus (Bovine)	0	0	0	1	2	6	2	12	0	11	18	22	8	8	11
247	TRINITY_DN294789_c1_g1	-3.78395584542341	8.65673957025456	23.8654832714376	6.17938500205367e-05	0.000793576621633033	Q8GXE9	TRINITY_DN294789_c1_g1_i1	9e-17	HVA22-like protein j (AtHVA22j)					reviewed	Arabidopsis thaliana (Mouse-ear cress)	176	158	105	127	56	67	61	721	365	721	735	364	749	1003	850
248	TRINITY_DN295071_c1_g1	-7.50444870584481	9.273160041984	91.9227697841311	1.65951218882695e-09	4.54530108355701e-08	C0LGG8	TRINITY_DN295071_c1_g1_i3	1.1e-06	Probable LRR receptor-like serine/threonine-protein kinase At1g53430 (EC 2.7.11.1)	protein autophosphorylation [GO:0046777]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005524; GO:0005886; GO:0016021; GO:0046777	reviewed	Arabidopsis thaliana (Mouse-ear cress)	57	101	30	41	102	19	60	2483.82	1585.04	2116.01	1144.62	433.73	929	1797.07	353.96
249	TRINITY_DN295075_c3_g1	9.71611634037831	4.64618551825481	17.2442257122674	0.000383969270780594	0.00384590580280239	Q5UAP0	TRINITY_DN295075_c3_g1_i1	1.1e-71	40S ribosomal protein S4	translation [GO:0006412]	ribosome [GO:0005840]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005840; GO:0006412; GO:0019843	reviewed	Bombyx mori (Silk moth)	15	7	80	2	6	52	6	0	0	4	1	4	2	1	2
250	TRINITY_DN295083_c1_g3	7.93118551173909	16.533677585843	57.4969460884361	1.0524357756184e-07	2.24709866215731e-06	P21357	TRINITY_DN295083_c1_g3_i1	8.2e-237	Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1) (DAHP synthase 1) (Phospho-2-keto-3-deoxyheptonate aldolase 1)	aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423]	chloroplast [GO:0009507]; membrane [GO:0016020]	3-deoxy-7-phosphoheptulonate synthase activity [GO:0003849]	GO:0003849; GO:0009073; GO:0009423; GO:0009507; GO:0016020	reviewed	Solanum tuberosum (Potato)	56750	94761	121968	94734	228926	58951	209750	11496	5122	15326	11143	20665	19957	11897	6066
251	TRINITY_DN295083_c2_g1	-3.43600172320125	9.75174791085277	20.3627755233362	0.000156437637972338	0.00181338760121493	B8AAV3	TRINITY_DN295083_c2_g1_i5	2.3e-61	Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic (OsCEST)	chloroplast organization [GO:0009658]; heat acclimation [GO:0010286]; hyperosmotic salinity response [GO:0042538]; photosystem I assembly [GO:0048564]; response to photooxidative stress [GO:0080183]; response to water deprivation [GO:0009414]	chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]		GO:0009414; GO:0009535; GO:0009658; GO:0010286; GO:0016021; GO:0042538; GO:0048564; GO:0080183	reviewed	Oryza sativa subsp. indica (Rice)	629	315	365	114	89	95	225	2119	1284	1471	1373	1517	1170	1747	768
252	TRINITY_DN295213_c0_g1	23.8335657274341	7.95656764354067	234.960952933434	2.13208778431671e-11	7.85572820530978e-10	P41004	TRINITY_DN295213_c0_g1_i1	2.5e-125	Structural maintenance of chromosomes protein 4 (Cell untimely torn protein 3) (Chromosome segregation protein cut3)	cell division [GO:0051301]; mitotic chromosome condensation [GO:0007076]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; nuclear chromatin [GO:0000790]; nuclear condensin complex [GO:0000799]; nucleus [GO:0005634]	ATP binding [GO:0005524]; DNA translocase activity [GO:0015616]; topological DNA entrapment activity [GO:0061776]	GO:0000790; GO:0000799; GO:0005524; GO:0005634; GO:0005737; GO:0005829; GO:0007076; GO:0015616; GO:0051301; GO:0061776	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	425	222	230	295	498	353	300	0	0	0	0	0	0	0	0
253	TRINITY_DN295214_c0_g1	11.1179592946664	5.70254307750935	13.8129019978213	0.00113209086186617	0.00973283671521057	P19036	TRINITY_DN295214_c0_g1_i2	3.1e-12	17.4 kDa class I heat shock protein (17.4 kDa heat shock protein 1) (AtHsp17.4A)	protein complex oligomerization [GO:0051259]; protein folding [GO:0006457]; response to heat [GO:0009408]; response to hydrogen peroxide [GO:0042542]; response to reactive oxygen species [GO:0000302]; response to salt stress [GO:0009651]	cytoplasm [GO:0005737]	protein self-association [GO:0043621]; unfolded protein binding [GO:0051082]	GO:0000302; GO:0005737; GO:0006457; GO:0009408; GO:0009651; GO:0042542; GO:0043621; GO:0051082; GO:0051259	reviewed	Arabidopsis thaliana (Mouse-ear cress)	5	10	154	271	4	0	2	15	0	0	0	0	2	0	5
254	TRINITY_DN295216_c0_g2	-3.33096618741531	10.0078551333375	24.3505624742236	5.46552542837485e-05	0.000716771237322888	Q6ZIK0	TRINITY_DN295216_c0_g2_i1	1.1e-108	Probable tocopherol O-methyltransferase, chloroplastic (EC 2.1.1.95) (Gamma-tocopherol methyltransferase) (Vitamin E pathway gene 4 protein)	vitamin E biosynthetic process [GO:0010189]	chloroplast [GO:0009507]	tocopherol O-methyltransferase activity [GO:0050342]	GO:0009507; GO:0010189; GO:0050342	reviewed	Oryza sativa subsp. japonica (Rice)	478	210	196	323	362	213	368	2478	1745	1519	1102	1077	1959	2838	1313
255	TRINITY_DN295218_c0_g1	18.7557164039059	6.77978612206574	112.270667668421	2.49813613409682e-10	7.76960632868147e-09	Q8BWD2	TRINITY_DN295218_c0_g1_i1	1.9e-17	Inositol hexakisphosphate kinase 3 (InsP6 kinase 3) (EC 2.7.4.21) (Inositol hexaphosphate kinase 3)	inositol phosphate biosynthetic process [GO:0032958]; phosphatidylinositol metabolic process [GO:0046488]; protein phosphorylation [GO:0006468]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; inositol hexakisphosphate 1-kinase activity [GO:0052723]; inositol hexakisphosphate 3-kinase activity [GO:0052724]; inositol hexakisphosphate 5-kinase activity [GO:0000832]; inositol hexakisphosphate 6-kinase activity [GO:0000831]; inositol hexakisphosphate kinase activity [GO:0000828]	GO:0000828; GO:0000831; GO:0000832; GO:0005524; GO:0005634; GO:0005737; GO:0006468; GO:0032958; GO:0046488; GO:0052723; GO:0052724	reviewed	Mus musculus (Mouse)	221	226	138	89	187	126	104	0	0	1	0	0	0	0	1
256	TRINITY_DN295223_c0_g1	7.47120107597705	3.94136889951955	16.5027369080336	0.00048072015623031	0.00466404038725018	Q9C9Y1	TRINITY_DN295223_c0_g1_i1	8.6e-06	TOM1-like protein 8	intracellular protein transport [GO:0006886]	cell [GO:0005623]; membrane [GO:0016020]		GO:0005623; GO:0006886; GO:0016020	reviewed	Arabidopsis thaliana (Mouse-ear cress)	13	11	14	40	35	6	8	1	2	1	0	1	6	6	3
257	TRINITY_DN295224_c1_g2	23.5298958926348	10.650602824713	381.384839736648	7.87413770346166e-16	6.09261404805346e-13	Q05062	TRINITY_DN295224_c1_g2_i1	6.8e-42	Cell division control protein 42 homolog (CDC42Ce)	actin cytoskeleton organization [GO:0030036]; actin filament organization [GO:0007015]; Cdc42 protein signal transduction [GO:0032488]; cell division [GO:0051301]; cell projection assembly [GO:0030031]; endocytosis [GO:0006897]; epithelial tube morphogenesis [GO:0060562]; establishment of mitotic spindle localization [GO:0040001]; establishment of mitotic spindle orientation [GO:0000132]; establishment or maintenance of cell polarity [GO:0007163]; positive regulation of clathrin-dependent endocytosis [GO:2000370]; regulation of actin cytoskeleton organization [GO:0032956]; regulation of actin filament-based process [GO:0032970]; regulation of cell shape [GO:0008360]; regulation of Golgi organization [GO:1903358]; Rho protein signal transduction [GO:0007266]	cell cortex [GO:0005938]; cell projection [GO:0042995]; centrosome [GO:0005813]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; integral component of membrane [GO:0016021]; perinuclear region of cytoplasm [GO:0048471]; plasma membrane [GO:0005886]; recycling endosome [GO:0055037]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; protein kinase binding [GO:0019901]	GO:0000132; GO:0003924; GO:0005525; GO:0005737; GO:0005813; GO:0005829; GO:0005886; GO:0005938; GO:0006897; GO:0007015; GO:0007163; GO:0007266; GO:0008360; GO:0016021; GO:0019901; GO:0030031; GO:0030036; GO:0032488; GO:0032956; GO:0032970; GO:0040001; GO:0042995; GO:0048471; GO:0051301; GO:0055037; GO:0060562; GO:1903358; GO:2000370	reviewed	Caenorhabditis elegans	3037	3222	2827	2050	1880	1902	882	1	0	2	1	0	0	2	2
258	TRINITY_DN295225_c0_g2	-8.47547158341099	1.80183061149354	12.2978536389059	0.00251279880648096	0.0188764861797538	Q9FHB6	TRINITY_DN295225_c0_g2_i1	4.5e-15	Protein DETOXIFICATION 16 (AtDTX16) (Multidrug and toxic compound extrusion protein 16) (MATE protein 16)	drug transmembrane transport [GO:0006855]; response to nematode [GO:0009624]	integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]	antiporter activity [GO:0015297]; xenobiotic transmembrane transporter activity [GO:0042910]	GO:0005774; GO:0006855; GO:0009624; GO:0015297; GO:0016021; GO:0042910	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	0	0	0	0	0	3	3	1	1	4	2	6	2
259	TRINITY_DN295225_c1_g1	-9.92359769536979	5.61882650328292	21.8692871488036	0.000103922624069638	0.00129172900199008	Q9FHB6	TRINITY_DN295225_c1_g1_i1	1e-41	Protein DETOXIFICATION 16 (AtDTX16) (Multidrug and toxic compound extrusion protein 16) (MATE protein 16)	drug transmembrane transport [GO:0006855]; response to nematode [GO:0009624]	integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]	antiporter activity [GO:0015297]; xenobiotic transmembrane transporter activity [GO:0042910]	GO:0005774; GO:0006855; GO:0009624; GO:0015297; GO:0016021; GO:0042910	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	3	2	3	3	0	67	79	99	40	167	32	167	69
260	TRINITY_DN295268_c2_g1	-3.17128616388679	8.73629078387086	16.5856748688502	0.000468679344968007	0.00456151752413831	B9DFI7	TRINITY_DN295268_c2_g1_i1	1.6e-124	Probable methyltransferase PMT2 (EC 2.1.1.-)		endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; trans-Golgi network [GO:0005802]	methyltransferase activity [GO:0008168]	GO:0000139; GO:0005768; GO:0005794; GO:0005802; GO:0008168; GO:0016020; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)	198	125	104	127	69	84	193	949	698	806	457	676	639	967	452
261	TRINITY_DN295269_c0_g3	20.6640831516458	6.33302652852744	112.075036363028	6.54499280504773e-09	1.73134638731818e-07	Q0KHQ5	TRINITY_DN295269_c0_g3_i1	2.6e-11	Serine/threonine-protein kinase Tao (EC 2.7.11.1)	activation of MAPKK activity [GO:0000186]; activation of protein kinase activity [GO:0032147]; apoptotic process [GO:0006915]; central complex development [GO:0048036]; intestinal stem cell homeostasis [GO:0036335]; mushroom body development [GO:0016319]; negative regulation of organ growth [GO:0046621]; ovarian follicle cell development [GO:0030707]; positive regulation of endocytosis [GO:0045807]; positive regulation of hippo signaling [GO:0035332]; protein phosphorylation [GO:0006468]; response to cocaine [GO:0042220]; response to ethanol [GO:0045471]; response to nicotine [GO:0035094]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098]; tissue homeostasis [GO:0001894]	axon [GO:0030424]; basal part of cell [GO:0045178]; cell cortex [GO:0005938]; cytoplasm [GO:0005737]; membrane [GO:0016020]; microtubule [GO:0005874]; nucleus [GO:0005634]; perikaryon [GO:0043204]; plasma membrane [GO:0005886]; spindle [GO:0005819]	ATP binding [GO:0005524]; MAP kinase kinase kinase activity [GO:0004709]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]	GO:0000186; GO:0001894; GO:0004672; GO:0004674; GO:0004709; GO:0005524; GO:0005634; GO:0005737; GO:0005819; GO:0005874; GO:0005886; GO:0005938; GO:0006468; GO:0006915; GO:0016020; GO:0016319; GO:0023014; GO:0030424; GO:0030707; GO:0031098; GO:0032147; GO:0035094; GO:0035332; GO:0036335; GO:0042220; GO:0043204; GO:0045178; GO:0045471; GO:0045807; GO:0046621; GO:0048036	reviewed	Drosophila melanogaster (Fruit fly)	117	198	86	132	99	108	58	0	0	0	0	0	0	0	0
262	TRINITY_DN295269_c0_g4	14.4443391436367	3.4504687961474	36.672072229631	1.27478161831022e-05	0.000191526655760686	Q55FT4	TRINITY_DN295269_c0_g4_i1	3.7e-13	Probable serine/threonine-protein kinase tsuA (EC 2.7.11.1) (Tsunami)	chemotaxis to cAMP [GO:0043327]; chemotaxis to folate [GO:0043326]; establishment of cell polarity [GO:0030010]; negative regulation of actin filament polymerization [GO:0030837]; positive regulation of hh target transcription factor activity [GO:0007228]; protein phosphorylation [GO:0006468]; regulation of aggregation involved in sorocarp development [GO:0060176]; regulation of pseudopodium assembly [GO:0031272]	cytoplasm [GO:0005737]; cytoplasmic microtubule [GO:0005881]	ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005524; GO:0005737; GO:0005881; GO:0006468; GO:0007228; GO:0030010; GO:0030837; GO:0031272; GO:0043326; GO:0043327; GO:0060176	reviewed	Dictyostelium discoideum (Slime mold)	18	25	17	9	10	10	4	0	0	0	0	0	0	0	0
263	TRINITY_DN295269_c0_g5	15.1383348273827	3.95981151674203	40.9526932492339	6.53868473973334e-06	0.000104315614791107	Q55FS2	TRINITY_DN295269_c0_g5_i1	7.6e-11	Serine/threonine-protein kinase 4 homolog B (EC 2.7.11.1) (Kinase responsive to stress B) (STE20-like kinase krsB)	activation of protein kinase activity [GO:0032147]; aggregation involved in sorocarp development [GO:0031152]; cell motility [GO:0048870]; chemotaxis to cAMP [GO:0043327]; negative regulation of cell-substrate adhesion [GO:0010812]; programmed cell death [GO:0012501]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; signal transduction [GO:0007165]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005524; GO:0005634; GO:0005737; GO:0006468; GO:0007165; GO:0010812; GO:0012501; GO:0023014; GO:0031098; GO:0031152; GO:0032147; GO:0043327; GO:0046777; GO:0046872; GO:0048870	reviewed	Dictyostelium discoideum (Slime mold)	13	19	6	24	26	32	8	0	0	0	0	0	0	0	0
264	TRINITY_DN295269_c0_g6	9.35352655472444	1.86038163980533	15.9560507203302	0.000935265876317141	0.00831795369885503	P25341	TRINITY_DN295269_c0_g6_i2	2.6e-08	Serine/threonine-protein kinase KIN82 (EC 2.7.11.1) (Flippase kinase 2)	phospholipid translocation [GO:0045332]; protein phosphorylation [GO:0006468]; response to pheromone triggering conjugation with cellular fusion [GO:0000749]	cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]	ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]	GO:0000749; GO:0004672; GO:0004674; GO:0005524; GO:0005634; GO:0005737; GO:0005886; GO:0006468; GO:0045332	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	1	0	3	3	4	2	2	0	0	0	0	0	0	0	0
265	TRINITY_DN295270_c0_g1	-4.76164323713494	6.94852050207218	14.9294248709241	0.000786836278498505	0.00718365274912352	Q8K2V6	TRINITY_DN295270_c0_g1_i2	1.3e-104	Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)	protein import into nucleus [GO:0006606]; ribosomal protein import into nucleus [GO:0006610]	cytosol [GO:0005829]; fibrillar center [GO:0001650]; nuclear envelope [GO:0005635]; nucleus [GO:0005634]	nuclear import signal receptor activity [GO:0061608]; Ran GTPase binding [GO:0008536]	GO:0001650; GO:0005634; GO:0005635; GO:0005829; GO:0006606; GO:0006610; GO:0008536; GO:0061608	reviewed	Mus musculus (Mouse)	25	6	20	16	24	10	57	451	364	298	267	119	81	179	113
266	TRINITY_DN296278_c0_g3	19.7368360232981	7.84855591158132	179.33790349797	2.3506493916608e-12	9.96610940710982e-11	Q9I0K9	TRINITY_DN296278_c0_g3_i1	1.6e-128	Adenylosuccinate lyase (ASL) (EC 4.3.2.2) (Adenylosuccinase) (ASase)	'de novo' AMP biosynthetic process [GO:0044208]; 'de novo' IMP biosynthetic process [GO:0006189]	cytosol [GO:0005829]	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity [GO:0070626]; N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [GO:0004018]	GO:0004018; GO:0005829; GO:0006189; GO:0044208; GO:0070626	reviewed	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	365.96	411	263	272	344	311	257	1	0	0	2	0	1	0	0
267	TRINITY_DN296278_c0_g4	12.7725634745589	2.80412952239449	26.9522767884846	7.31072994213808e-05	0.000927324146349072	P0AB90	TRINITY_DN296278_c0_g4_i1	8.2e-64	Adenylosuccinate lyase (ASL) (EC 4.3.2.2) (Adenylosuccinase) (ASase)	'de novo' AMP biosynthetic process [GO:0044208]; 'de novo' IMP biosynthetic process [GO:0006189]		(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity [GO:0070626]; N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [GO:0004018]	GO:0004018; GO:0006189; GO:0044208; GO:0070626	reviewed	Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)	10	3	15	5	7	3	4	0	0	0	0	0	0	0	0
268	TRINITY_DN296278_c0_g5	22.383494083794	7.36270478524612	177.28950559101	1.96865376038097e-10	6.4818972216799e-09	Q54J34	TRINITY_DN296278_c0_g5_i1	2.6e-129	Adenylosuccinate lyase (ASL) (EC 4.3.2.2) (Adenylosuccinase) (ASase)	'de novo' AMP biosynthetic process [GO:0044208]; 'de novo' IMP biosynthetic process [GO:0006189]; purine nucleotide biosynthetic process [GO:0006164]		(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity [GO:0070626]; N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [GO:0004018]	GO:0004018; GO:0006164; GO:0006189; GO:0044208; GO:0070626	reviewed	Dictyostelium discoideum (Slime mold)	170	162	122	221	341	317	167	0	0	0	0	0	0	0	0
269	TRINITY_DN296362_c0_g1	-2.93434263792035	8.87015707265843	13.5822884300354	0.00122234041629762	0.0103364578919157	Q9FIN7	TRINITY_DN296362_c0_g1_i1	1.7e-300	MAG2-interacting protein 2	protein maturation [GO:0051604]; protein transport [GO:0015031]; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum [GO:0006890]; vacuolar protein processing [GO:0006624]	endoplasmic reticulum membrane [GO:0005789]; vacuole [GO:0005773]		GO:0005773; GO:0005789; GO:0006624; GO:0006890; GO:0015031; GO:0051604	reviewed	Arabidopsis thaliana (Mouse-ear cress)	254	344	143	73	33	77	173	1833	1398	1120	700	362	432	507	345
270	TRINITY_DN296362_c0_g2	-14.4054821416874	5.05484956443749	36.2415610649465	5.61202449636312e-06	9.23894458310844e-05	Q6NVM6	TRINITY_DN296362_c0_g2_i5	3.5e-57	Nucleolar protein 10	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]	nucleolus [GO:0005730]; small-subunit processome [GO:0032040]		GO:0000462; GO:0005730; GO:0032040	reviewed	Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)	0	0	0	0	0	1	1	85	81	103	97	45	17	47	52
271	TRINITY_DN296362_c0_g5	-8.53357073222925	7.29933524522993	43.5565979433334	9.76841693501126e-07	1.75774711708488e-05	Q8LF21	TRINITY_DN296362_c0_g5_i1	4.8e-281	Dynamin-related protein 1C (Dynamin-like protein 5) (Dynamin-like protein C) (Dynamin-like protein DLP1)	cell cycle [GO:0007049]; cell division [GO:0051301]; mitochondrial fission [GO:0000266]; mitochondrion organization [GO:0007005]; pollen maturation [GO:0010152]	cell cortex [GO:0005938]; cell plate [GO:0009504]; cytoplasm [GO:0005737]; membrane [GO:0016020]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; microtubule binding [GO:0008017]	GO:0000266; GO:0003924; GO:0005525; GO:0005737; GO:0005874; GO:0005886; GO:0005938; GO:0007005; GO:0007049; GO:0008017; GO:0009504; GO:0009506; GO:0009524; GO:0010152; GO:0016020; GO:0051301	reviewed	Arabidopsis thaliana (Mouse-ear cress)	22	9	8	12	3	5	6	789	320	302	214	215	90	565	184
272	TRINITY_DN296376_c0_g1	-11.6229747535938	3.64255890417072	20.4174779685773	0.000208770097897603	0.00232425702515497	A5AEC8	TRINITY_DN296376_c0_g1_i4	1.4e-87	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic [Cleaved into: Arginine biosynthesis bifunctional protein ArgJ alpha chain; Arginine biosynthesis bifunctional protein ArgJ beta chain] [Includes: Glutamate N-acetyltransferase (GAT) (EC 2.3.1.35) (Ornithine acetyltransferase) (OATase) (Ornithine transacetylase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate synthase) (AGS)]	arginine biosynthetic process [GO:0006526]	chloroplast stroma [GO:0009570]	acetyl-CoA:L-glutamate N-acetyltransferase activity [GO:0004042]; glutamate N-acetyltransferase activity [GO:0004358]; methione N-acyltransferase activity [GO:0103045]	GO:0004042; GO:0004358; GO:0006526; GO:0009570; GO:0103045	reviewed	Vitis vinifera (Grape)	0	0	1	0	0	0	0	34	39	49	28	8	3	8	15
273	TRINITY_DN296377_c0_g1	17.9912410673623	5.04034085731647	63.3608690764906	3.85782787450705e-07	7.50941966767252e-06	Q0DXS3	TRINITY_DN296377_c0_g1_i2	1.7e-79	Probable RNA-dependent RNA polymerase 1 (OsRDR1) (EC 2.7.7.48)	positive regulation of posttranscriptional gene silencing [GO:0060148]; production of siRNA involved in chromatin silencing by small RNA [GO:0070919]; production of siRNA involved in RNA interference [GO:0030422]; response to salicylic acid [GO:0009751]; response to virus [GO:0009615]; wax biosynthetic process [GO:0010025]	nuclear RNA-directed RNA polymerase complex [GO:0031380]; nucleus [GO:0005634]	RNA binding [GO:0003723]; RNA-directed 5'-3' RNA polymerase activity [GO:0003968]	GO:0003723; GO:0003968; GO:0005634; GO:0009615; GO:0009751; GO:0010025; GO:0030422; GO:0031380; GO:0060148; GO:0070919	reviewed	Oryza sativa subsp. japonica (Rice)	38	41	56	42	36	34	43	0	0	0	0	0	0	0	0
274	TRINITY_DN296379_c5_g1	2.4153216005952	10.8111947530297	14.2047411930543	0.000994999353515208	0.00869980065277489	P34909	TRINITY_DN296379_c5_g1_i1	5.4e-11	General negative regulator of transcription subunit 4 (Modulator of transcription 2)	deadenylation-independent decapping of nuclear-transcribed mRNA [GO:0031087]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; proteasomal protein catabolic process [GO:0010498]; protein polyubiquitination [GO:0000209]; protein ubiquitination [GO:0016567]	CCR4-NOT complex [GO:0030014]; CCR4-NOT core complex [GO:0030015]; cytoplasm [GO:0005737]; nucleus [GO:0005634]	metal ion binding [GO:0046872]; RNA binding [GO:0003723]; ubiquitin-protein transferase activity [GO:0004842]	GO:0000209; GO:0003723; GO:0004842; GO:0005634; GO:0005737; GO:0010498; GO:0016567; GO:0030014; GO:0030015; GO:0031087; GO:0032968; GO:0046872	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	2776	2111	2660	1046	844	872	1298	1725	1473	1218	864	1029	1510	1156	1169
275	TRINITY_DN296706_c2_g1	-3.49195769973623	7.39410754165793	9.42266773500967	0.00541802131316424	0.0340828779761043	Q8L7N4	TRINITY_DN296706_c2_g1_i2	1.4e-70	E3 ubiquitin-protein ligase SP1 (EC 2.3.2.27) (DIAP1-like protein 1) (Protein SUPPRESSOR OF PPI1 LOCUS 1) (RING-type E3 ubiquitin transferase SP1)	organelle organization [GO:0006996]; regulation of protein import into chloroplast stroma [GO:1904215]	chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]	metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]	GO:0004842; GO:0006996; GO:0009707; GO:0016021; GO:0046872; GO:1904215	reviewed	Arabidopsis thaliana (Mouse-ear cress)	110	39	75	27	6	17	52	440	400	299.75	254	243	131	295	194
276	TRINITY_DN296757_c3_g1	-2.01533581312683	9.03476639171668	8.24304335100707	0.0086247653893712	0.0495243949538105	P50287	TRINITY_DN296757_c3_g1_i1	1.8e-61	Isoaspartyl peptidase/L-asparaginase 1 (EC 3.4.19.5) (L-asparagine amidohydrolase 1) [Cleaved into: Isoaspartyl peptidase/L-asparaginase 1 subunit alpha; Isoaspartyl peptidase/L-asparaginase 1 subunit beta]	asparagine catabolic process via L-aspartate [GO:0033345]	cytoplasm [GO:0005737]; cytosol [GO:0005829]	asparaginase activity [GO:0004067]; beta-aspartyl-peptidase activity [GO:0008798]	GO:0004067; GO:0005737; GO:0005829; GO:0008798; GO:0033345	reviewed	Arabidopsis thaliana (Mouse-ear cress)	379	315	270	131	98	135	211	1190	1015	965	583	576	643	815	587
277	TRINITY_DN296758_c2_g1	-4.67442112153169	7.77281455729541	19.1279853960883	0.000221297086025999	0.00242019251325254	Q6Z844	TRINITY_DN296758_c2_g1_i1	1.8e-17	Coatomer subunit zeta-2 (Non-clathrin coat protein zeta2-COP) (Zeta-2-coat protein) (Zeta-COP 2)	intracellular protein transport [GO:0006886]; intra-Golgi vesicle-mediated transport [GO:0006891]; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum [GO:0006890]	COPI vesicle coat [GO:0030126]; Golgi membrane [GO:0000139]		GO:0000139; GO:0006886; GO:0006890; GO:0006891; GO:0030126	reviewed	Oryza sativa subsp. japonica (Rice)	122	40	64	29	6	29	22	576	485	454	324	316	197	477	322
278	TRINITY_DN296758_c2_g5	6.05708278304911	11.4868286950824	61.410799696044	6.04317319688565e-08	1.38545341069341e-06	P47927	TRINITY_DN296758_c2_g5_i2	1.3e-60	Floral homeotic protein APETALA 2	cell differentiation [GO:0030154]; flower development [GO:0009908]; meristem maintenance [GO:0010073]; plant ovule development [GO:0048481]; seed development [GO:0048316]; specification of floral organ identity [GO:0010093]	nucleus [GO:0005634]	DNA binding [GO:0003677]; DNA-binding transcription factor activity [GO:0003700]	GO:0003677; GO:0003700; GO:0005634; GO:0009908; GO:0010073; GO:0010093; GO:0030154; GO:0048316; GO:0048481	reviewed	Arabidopsis thaliana (Mouse-ear cress)	1754	3782	2568	1979	5272	1372	8148	865	582	609	336	890	997	595	658
279	TRINITY_DN296759_c4_g1	12.3973197391514	4.06721859090254	18.884256749985	0.00023728735268011	0.002523726311151	P02556	TRINITY_DN296759_c4_g1_i2	9.7e-14	Tubulin beta chain (Beta-tubulin) (Fragment)	microtubule-based process [GO:0007017]	cytoplasm [GO:0005737]; microtubule [GO:0005874]	GTP binding [GO:0005525]; structural constituent of cytoskeleton [GO:0005200]	GO:0005200; GO:0005525; GO:0005737; GO:0005874; GO:0007017	reviewed	Lytechinus pictus (Painted sea urchin)	6	4	58	1	1	38	0	1	0	1	0	0	0	0	1
280	TRINITY_DN296771_c4_g2	11.1157062922759	2.22795715103984	12.6900215458524	0.0023913253654809	0.0181846486637921	P27165	TRINITY_DN296771_c4_g2_i1	1e-14	Calmodulin (CaM)	calcium-mediated signaling [GO:0019722]		calcium ion binding [GO:0005509]	GO:0005509; GO:0019722	reviewed	Phytophthora infestans (Potato late blight fungus) (Botrytis infestans)	0	0	10	0	3	8	0	0	0	0	0	0	0	0	0
281	TRINITY_DN296781_c0_g1	-5.85241681863544	8.2091790515646	30.1205144168377	1.39456824642806e-05	0.000206516206827505	Q5M755	TRINITY_DN296781_c0_g1_i1	3.3e-08	Fibrillin-5, chloroplastic (Plastid-lipid-associated protein 7)	plastoquinone biosynthetic process [GO:0010236]	chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]		GO:0009507; GO:0009570; GO:0010236	reviewed	Arabidopsis thaliana (Mouse-ear cress)	140	49	45	23	4	14	37	1215	726	643	592	386	239	582	298
282	TRINITY_DN296783_c0_g1	-4.06557412890791	9.23535601549476	19.0047612124203	0.000229229384254682	0.00246341994537583	Q93ZB6	TRINITY_DN296783_c0_g1_i1	5.3e-167	Uroporphyrinogen decarboxylase 1, chloroplastic (UPD1) (URO-D1) (EC 4.1.1.37)	chlorophyll biosynthetic process [GO:0015995]; heme biosynthetic process [GO:0006783]; protoporphyrinogen IX biosynthetic process [GO:0006782]; response to cadmium ion [GO:0046686]	chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]	uroporphyrinogen decarboxylase activity [GO:0004853]	GO:0004853; GO:0005829; GO:0006782; GO:0006783; GO:0009507; GO:0009570; GO:0015995; GO:0046686	reviewed	Arabidopsis thaliana (Mouse-ear cress)	167	140	369	99	21	102	72	1355	1431	1444	837	580	710	840	1282
283	TRINITY_DN296786_c0_g1	-8.70404039833948	6.20216870029087	20.9015497170504	0.000134915676543109	0.00160059235952649	Q39079	TRINITY_DN296786_c0_g1_i1	2.2e-50	Chaperone protein dnaJ 13 (AtDjB13) (AtJ13)	response to very low light intensity stimulus [GO:0055122]; vegetative to reproductive phase transition of meristem [GO:0010228]	integral component of membrane [GO:0016021]; plastid [GO:0009536]		GO:0009536; GO:0010228; GO:0016021; GO:0055122	reviewed	Arabidopsis thaliana (Mouse-ear cress)	15	6	8	0	0	4	0	278	297	205	158	85	28	105	69
284	TRINITY_DN296786_c0_g3	4.99346222609486	12.9030270277317	44.8945019510966	7.73275352741236e-07	1.4245757242465e-05	Q39079	TRINITY_DN296786_c0_g3_i6	1.9e-08	Chaperone protein dnaJ 13 (AtDjB13) (AtJ13)	response to very low light intensity stimulus [GO:0055122]; vegetative to reproductive phase transition of meristem [GO:0010228]	integral component of membrane [GO:0016021]; plastid [GO:0009536]		GO:0009536; GO:0010228; GO:0016021; GO:0055122	reviewed	Arabidopsis thaliana (Mouse-ear cress)	5530	6478	9173	9227.98	10407	6077	12830	2414	1647	2425	2650	2548	4455	2110	2574
285	TRINITY_DN296791_c0_g1	-10.2016642461943	7.0163330003539	47.7316515520258	4.7835451904369e-07	9.13893355827297e-06	Q9FUZ0	TRINITY_DN296791_c0_g1_i1	1.4e-81	Peptide deformylase 1A, chloroplastic (PDF 1A) (EC 3.5.1.88) (Polypeptide deformylase)	co-translational protein modification [GO:0043686]; N-terminal protein amino acid modification [GO:0031365]; peptidyl-methionine modification [GO:0018206]; translation [GO:0006412]	chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; plant-type cell wall [GO:0009505]	metal ion binding [GO:0046872]; peptide deformylase activity [GO:0042586]	GO:0005739; GO:0006412; GO:0009505; GO:0009507; GO:0009570; GO:0018206; GO:0031365; GO:0042586; GO:0043686; GO:0046872	reviewed	Solanum lycopersicum (Tomato) (Lycopersicon esculentum)	54	41	16	0	0	1	0	603	456	373	389	102	73	102	78
286	TRINITY_DN296798_c5_g3	10.4979117429551	4.47315662678617	14.3428683854238	0.000951088693816378	0.00841034144960483	P33188	TRINITY_DN296798_c5_g3_i2	2.5e-62	Tubulin beta chain (Beta-tubulin)	microtubule-based process [GO:0007017]; microtubule cytoskeleton organization [GO:0000226]; mitotic cell cycle [GO:0000278]	cytoplasm [GO:0005737]; microtubule [GO:0005874]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; structural constituent of cytoskeleton [GO:0005200]	GO:0000226; GO:0000278; GO:0003924; GO:0005200; GO:0005525; GO:0005737; GO:0005874; GO:0007017	reviewed	Paramecium tetraurelia	11	5	104	0	6	28.03	0	0	0	3	0	3	1	1	0
287	TRINITY_DN298147_c1_g1	-8.1423835706113	5.19162264057671	19.0470110612767	0.000226475247638173	0.00245944172435139	Q84J46	TRINITY_DN298147_c1_g1_i1	3e-69	Pentatricopeptide repeat-containing protein At3g29290 (Protein EMBRYO DEFECTIVE 2076)					reviewed	Arabidopsis thaliana (Mouse-ear cress)	5	0	1	3	2	2	1	193	129	103	51	26	26	39	48
288	TRINITY_DN298149_c0_g1	13.5630291762584	3.43962458217787	15.6688406034539	0.00101148625668466	0.00881845060405355	Q9SLX0	TRINITY_DN298149_c0_g1_i1	3e-24	Importin subunit alpha-1b	NLS-bearing protein import into nucleus [GO:0006607]	cytosol [GO:0005829]; nuclear pore [GO:0005643]; nucleoplasm [GO:0005654]; perinuclear region of cytoplasm [GO:0048471]	nuclear import signal receptor activity [GO:0061608]; nuclear localization sequence binding [GO:0008139]	GO:0005643; GO:0005654; GO:0005829; GO:0006607; GO:0008139; GO:0048471; GO:0061608	reviewed	Oryza sativa subsp. japonica (Rice)	0	0	11	0	16	39	0	0	0	0	0	0	0	0	0
289	TRINITY_DN298161_c0_g1	-2.87494071168932	8.13375834917793	10.7253898945719	0.00332037056867518	0.0233557884319311	B1AVH7	TRINITY_DN298161_c0_g1_i1	3.6e-09	TBC1 domain family member 2A	activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; positive regulation of GTPase activity [GO:0043547]	cell junction [GO:0030054]; cytoplasmic vesicle [GO:0031410]; cytosol [GO:0005829]; nucleus [GO:0005634]	cadherin binding [GO:0045296]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]	GO:0005096; GO:0005634; GO:0005829; GO:0006886; GO:0017137; GO:0030054; GO:0031410; GO:0043547; GO:0045296; GO:0090630	reviewed	Mus musculus (Mouse)	159	121	118	81	22	63	80	791	647	585	288	315	330	444	343
290	TRINITY_DN298164_c0_g1	19.1507416085678	5.66522185861127	77.7544360060156	9.32391731798781e-08	2.03222000698396e-06	Q2UU67	TRINITY_DN298164_c0_g1_i1	3.2e-19	Mitochondrial glycine transporter (Solute carrier family 25 member 38 homolog)	glycine import into mitochondrion [GO:1904983]	integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]	glycine transmembrane transporter activity [GO:0015187]	GO:0005743; GO:0015187; GO:0016021; GO:1904983	reviewed	Aspergillus oryzae (strain ATCC 42149 / RIB 40) (Yellow koji mold)	82	62	37	79	78	92	29	0	0	0	0	0	0	0	0
291	TRINITY_DN298165_c0_g2	-3.01552857672569	9.74971857029634	24.4514970746867	5.32858052699808e-05	0.000704784475686284	Q8GXG1	TRINITY_DN298165_c0_g2_i2	3.9e-132	Probable isoaspartyl peptidase/L-asparaginase 2 (EC 3.4.19.5) (L-asparagine amidohydrolase 2) [Cleaved into: Isoaspartyl peptidase/L-asparaginase 2 subunit alpha; Isoaspartyl peptidase/L-asparaginase 2 subunit beta]	asparagine catabolic process via L-aspartate [GO:0033345]	cytoplasm [GO:0005737]	asparaginase activity [GO:0004067]; beta-aspartyl-peptidase activity [GO:0008798]	GO:0004067; GO:0005737; GO:0008798; GO:0033345	reviewed	Arabidopsis thaliana (Mouse-ear cress)	431	1919	448	92	143	70	104	2123	1932	1752	1150	903	808	1115	1073
292	TRINITY_DN298167_c1_g1	-3.88203821085097	8.81279046389147	17.3942128942841	0.000367109839623286	0.003716585245272	P40940	TRINITY_DN298167_c1_g1_i2	1.3e-88	ADP-ribosylation factor 3 (AtARF3) (Protein ARF-LIKE 1) (AtARL1)	intracellular protein transport [GO:0006886]; response to cadmium ion [GO:0046686]; vesicle-mediated transport [GO:0016192]	cytoplasm [GO:0005737]; Golgi apparatus [GO:0005794]; Golgi stack [GO:0005795]; membrane [GO:0016020]; plasma membrane [GO:0005886]	GTP binding [GO:0005525]	GO:0005525; GO:0005737; GO:0005794; GO:0005795; GO:0005886; GO:0006886; GO:0016020; GO:0016192; GO:0046686	reviewed	Arabidopsis thaliana (Mouse-ear cress)	189	83	168	55	20	76	144	1046	988	940	664	562	605	959	570
293	TRINITY_DN298173_c0_g1	22.2909543001589	11.7972251374186	290.980393196536	1.4624672474272e-14	2.05742551399417e-12	Q9FMU6	TRINITY_DN298173_c0_g1_i1	1.4e-56	Mitochondrial phosphate carrier protein 3, mitochondrial (Mitochondrial phosphate transporter 3) (MPT3) (Phosphate transporter 3;1)	phosphate ion transmembrane transport [GO:0035435]; response to salt stress [GO:0009651]	cell wall [GO:0005618]; chloroplast [GO:0009507]; integral component of mitochondrial inner membrane [GO:0031305]; membrane [GO:0016020]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]	inorganic phosphate transmembrane transporter activity [GO:0005315]	GO:0005315; GO:0005618; GO:0005739; GO:0005774; GO:0009507; GO:0009651; GO:0016020; GO:0031305; GO:0035435	reviewed	Arabidopsis thaliana (Mouse-ear cress)	5633	4911	3412	4214	6274	5842	3457	3	2	3	13	0	1	5	3
294	TRINITY_DN298177_c0_g1	-4.45051932037226	7.0251201949936	15.3402819078609	0.000690333824118562	0.00643549152303298	Q9FJY7	TRINITY_DN298177_c0_g1_i1	7.9e-92	Pentatricopeptide repeat-containing protein At5g66520	chloroplast RNA modification [GO:1900865]; cytidine to uridine editing [GO:0016554]; RNA modification [GO:0009451]	chloroplast [GO:0009507]	zinc ion binding [GO:0008270]	GO:0008270; GO:0009451; GO:0009507; GO:0016554; GO:1900865	reviewed	Arabidopsis thaliana (Mouse-ear cress)	64	64	19	12	19	15	21	476	183	397	313	161	45	260	103
295	TRINITY_DN298179_c0_g2	2.42509450274764	10.9233267313008	10.0280248440208	0.00430281553061923	0.0285777125907007	Q9LZJ5	TRINITY_DN298179_c0_g2_i1	0	ABC transporter C family member 14 (ABC transporter ABCC.14) (AtABCC14) (EC 7.6.2.2) (ATP-energized glutathione S-conjugate pump 10) (Glutathione S-conjugate-transporting ATPase 10) (Multidrug resistance-associated protein 10)	transmembrane transport [GO:0055085]	Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plant-type vacuole [GO:0000325]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]	ATPase activity [GO:0016887]; ATPase-coupled transmembrane transporter activity [GO:0042626]; ATP binding [GO:0005524]	GO:0000325; GO:0005524; GO:0005773; GO:0005774; GO:0005794; GO:0016020; GO:0016021; GO:0016887; GO:0042626; GO:0055085	reviewed	Arabidopsis thaliana (Mouse-ear cress)	1861	888	1059	1008	3141	1056	3718	2603	1540	1281	1239	1341	664	994	703
296	TRINITY_DN298237_c0_g1	-5.71477486384601	6.19016253622073	16.6662815924452	0.000457291780326742	0.00446472574167592	Q6YWK8	TRINITY_DN298237_c0_g1_i1	1.4e-20	Probable glucomannan 4-beta-mannosyltransferase 11 (EC 2.4.1.32) (Cellulose synthase-like protein A11) (OsCslA11) (Glucomannan synthase) (Mannan synthase 11)	cell wall organization [GO:0071555]	Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]	glucomannan 4-beta-mannosyltransferase activity [GO:0047259]; mannan synthase activity [GO:0051753]; transferase activity, transferring glycosyl groups [GO:0016757]	GO:0000139; GO:0005794; GO:0016021; GO:0016757; GO:0047259; GO:0051753; GO:0071555	reviewed	Oryza sativa subsp. japonica (Rice)	25	30	19	7	1	3	5	307	190	70	226	63	56	115	77
297	TRINITY_DN298237_c0_g2	-6.46774260094297	6.00472761980301	13.757380671762	0.00115313264769165	0.00988627574683003	Q9HCU8	TRINITY_DN298237_c0_g2_i1	7.2e-09	DNA polymerase delta subunit 4 (DNA polymerase delta subunit p12)	DNA damage response, detection of DNA damage [GO:0042769]; DNA-dependent DNA replication [GO:0006261]; mismatch repair [GO:0006298]; nucleotide-excision repair, DNA gap filling [GO:0006297]; nucleotide-excision repair, DNA incision [GO:0033683]; nucleotide-excision repair, DNA incision, 5'-to lesion [GO:0006296]; telomere maintenance [GO:0000723]; telomere maintenance via semi-conservative replication [GO:0032201]; transcription-coupled nucleotide-excision repair [GO:0006283]; translesion synthesis [GO:0019985]	cytosol [GO:0005829]; delta DNA polymerase complex [GO:0043625]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]		GO:0000723; GO:0005634; GO:0005654; GO:0005730; GO:0005739; GO:0005829; GO:0006261; GO:0006283; GO:0006296; GO:0006297; GO:0006298; GO:0019985; GO:0032201; GO:0033683; GO:0042769; GO:0043625	reviewed	Homo sapiens (Human)	33	17	11	0	0	4	4	114	148	139	73	148	95	70	119
298	TRINITY_DN298417_c1_g1	6.6926741339971	3.84335376124612	8.5190625715318	0.00772051932964127	0.0455142996671233	Q9ZW86	TRINITY_DN298417_c1_g1_i2	3e-09	Prolyl 4-hydroxylase 1 (AtP4H-1) (AtP4H1) (EC 1.14.11.2)	peptidyl-proline hydroxylation to 4-hydroxy-L-proline [GO:0018401]	endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]	iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; procollagen-proline 4-dioxygenase activity [GO:0004656]	GO:0004656; GO:0005506; GO:0005783; GO:0005789; GO:0005794; GO:0016021; GO:0018401; GO:0031418	reviewed	Arabidopsis thaliana (Mouse-ear cress)	9.58	16.53	22.69	36.6	22.68	0	9.25	0	7.39	4.19	0	0	7.36	1	1.88
299	TRINITY_DN298447_c0_g1	-4.87317031568258	6.93476797478556	17.1996533043452	0.000389140943855781	0.00388513297172143	Q8RWR1	TRINITY_DN298447_c0_g1_i1	1.4e-101	Lysine-specific demethylase JMJ30 (AtJMJ30) (EC 1.14.11.-) (JmjC domain-containing protein 30) (Jumonji domain-containing protein 5) (AtJMJD5)	circadian rhythm [GO:0007623]; flower development [GO:0009908]; histone H3-K36 demethylation [GO:0070544]; regulation of circadian rhythm [GO:0042752]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	2-oxoglutarate-dependent dioxygenase activity [GO:0016706]; DNA-binding transcription factor activity [GO:0003700]; histone methyltransferase activity (H3-K36 specific) [GO:0046975]; metal ion binding [GO:0046872]	GO:0003700; GO:0005634; GO:0005737; GO:0007623; GO:0009908; GO:0016706; GO:0042752; GO:0046872; GO:0046975; GO:0070544	reviewed	Arabidopsis thaliana (Mouse-ear cress)	76	33	50	7	4	8	11	431	372	322	208	152	88	154	93
300	TRINITY_DN298447_c1_g1	-4.58038510425199	10.2614443043337	33.9088192286792	6.17526502139275e-06	9.9543985631305e-05	Q94AM1	TRINITY_DN298447_c1_g1_i1	2.3e-307	Organellar oligopeptidase A, chloroplastic/mitochondrial (EC 3.4.24.70) (Thimet metalloendopeptidase 1) (Zincin-like metalloproteases family protein 1)	peptide metabolic process [GO:0006518]; proteolysis [GO:0006508]	chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; mitochondrial matrix [GO:0005759]	metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]	GO:0004222; GO:0005759; GO:0005829; GO:0006508; GO:0006518; GO:0009507; GO:0009570; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)	455	310	307	163	127	102	322	4984	3174	2248	1572	1548	982	2757	1401
301	TRINITY_DN298449_c3_g4	-4.28551674371933	7.26669413302905	14.8843292454917	0.000798295243844569	0.00724552428064206	P40392	TRINITY_DN298449_c3_g4_i1	3.9e-47	Ras-related protein RIC1	endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; Rab protein signal transduction [GO:0032482]	endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]	GO:0000139; GO:0003924; GO:0005525; GO:0005789; GO:0005886; GO:0006886; GO:0006888; GO:0032482	reviewed	Oryza sativa subsp. japonica (Rice)	75	40	32	50	9	19	19	458	284	261	323	217	112	318	202
302	TRINITY_DN298449_c4_g2	-7.6957578931771	4.08494139543012	8.55506996101174	0.00761046952473975	0.0452099869080029	P62822	TRINITY_DN298449_c4_g2_i3	1.5e-44	Ras-related protein Rab-1A	autophagosome assembly [GO:0000045]; autophagy [GO:0006914]; cell migration [GO:0016477]; defense response to bacterium [GO:0042742]; endocytosis [GO:0006897]; endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; growth hormone secretion [GO:0030252]; interleukin-8 secretion [GO:0072606]; intracellular protein transport [GO:0006886]; Rab protein signal transduction [GO:0032482]; vesicle transport along microtubule [GO:0047496]	cytosol [GO:0005829]; early endosome [GO:0005769]; endoplasmic reticulum membrane [GO:0005789]; exocytic vesicle [GO:0070382]; Golgi membrane [GO:0000139]; melanosome [GO:0042470]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]	GO:0000045; GO:0000139; GO:0003924; GO:0005525; GO:0005769; GO:0005789; GO:0005829; GO:0006886; GO:0006888; GO:0006897; GO:0006914; GO:0016477; GO:0030252; GO:0032482; GO:0042470; GO:0042742; GO:0047496; GO:0070382; GO:0072606	reviewed	Canis lupus familiaris (Dog) (Canis familiaris)	0	2	3	0	0	0	1	179	1	92	10	1	20	8	0
303	TRINITY_DN298472_c6_g2	-2.65760952986602	9.71753219235888	10.9668570607445	0.00303991002194696	0.0219567023924577	Q9M1K3	TRINITY_DN298472_c6_g2_i1	5.7e-48	Probable aquaporin SIP2-1 (Small basic intrinsic protein 2-1) (AtSIP2;1)		endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]	channel activity [GO:0015267]	GO:0005789; GO:0015267; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)	458	203	307	231	77	231	239	1198	882	557	598	1231	1535	2665	1825
304	TRINITY_DN298472_c6_g3	-3.19191125518135	8.89315752983121	13.919283845117	0.00109293664759143	0.00944871207903764	Q6NWJ4	TRINITY_DN298472_c6_g3_i1	2.1e-58	DnaJ homolog subfamily C member 2	chromatin organization [GO:0006325]; positive regulation of transcription, DNA-templated [GO:0045893]	cytosol [GO:0005829]; nucleus [GO:0005634]	chromatin binding [GO:0003682]; DNA binding [GO:0003677]; histone binding [GO:0042393]; ubiquitin modification-dependent histone binding [GO:0061649]	GO:0003677; GO:0003682; GO:0005634; GO:0005829; GO:0006325; GO:0042393; GO:0045893; GO:0061649	reviewed	Danio rerio (Zebrafish) (Brachydanio rerio)	421	129	155	97	42	46	151	1063	854	861	470	700	651	1135	558
305	TRINITY_DN298476_c0_g1	-6.17949162017213	9.30297943020024	66.9445458202612	2.87980256569672e-08	7.24633247222062e-07	Q9LD55	TRINITY_DN298476_c0_g1_i3	1.2e-263	Eukaryotic translation initiation factor 3 subunit A (eIF3a) (Eukaryotic translation initiation factor 3 large subunit) (Eukaryotic translation initiation factor 3 subunit 10) (eIF-3-theta) (p114)	formation of cytoplasmic translation initiation complex [GO:0001732]; translational initiation [GO:0006413]; translation reinitiation [GO:0002188]	cytosol [GO:0005829]; eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; eukaryotic translation initiation factor 3 complex, eIF3e [GO:0071540]; eukaryotic translation initiation factor 3 complex, eIF3m [GO:0071541]; multi-eIF complex [GO:0043614]; plasma membrane [GO:0005886]	mRNA binding [GO:0003729]; translation initiation factor activity [GO:0003743]	GO:0001732; GO:0002188; GO:0003729; GO:0003743; GO:0005829; GO:0005852; GO:0005886; GO:0006413; GO:0016282; GO:0033290; GO:0043614; GO:0071540; GO:0071541	reviewed	Arabidopsis thaliana (Mouse-ear cress)	123	160	90	67	33	35	91	1908	1512	1566	678	877	915	1483	1068
306	TRINITY_DN298602_c0_g1	21.5622158296111	10.142527197682	209.900964157942	4.61771435005227e-13	2.6975303607523e-11	Q9HZP7	TRINITY_DN298602_c0_g1_i1	4e-82	Electron transfer flavoprotein subunit alpha (Alpha-ETF) (Electron transfer flavoprotein large subunit) (ETFLS)	fatty acid beta-oxidation using acyl-CoA dehydrogenase [GO:0033539]		electron transfer activity [GO:0009055]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity [GO:0016491]	GO:0009055; GO:0016491; GO:0033539; GO:0050660	reviewed	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	2079	1632	2658	1058	1235	1257	686	0	0	0	6	1	0	3	1
307	TRINITY_DN298605_c1_g1	9.80003507609302	3.51843858247441	12.0408723876739	0.00207120008784377	0.0159859458151533	O13755	TRINITY_DN298605_c1_g1_i1	4.1e-74	Fumarate reductase (FRDS) (EC 1.3.1.6) (FAD-dependent oxidoreductase) (NADH-dependent fumarate reductase)	fumarate metabolic process [GO:0006106]; tricarboxylic acid cycle [GO:0006099]	cytosol [GO:0005829]; mitochondrion [GO:0005739]; nucleus [GO:0005634]	fumarate reductase (NADH) activity [GO:0016156]; succinate dehydrogenase activity [GO:0000104]	GO:0000104; GO:0005634; GO:0005739; GO:0005829; GO:0006099; GO:0006106; GO:0016156	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	3	1	55	0	0	11	1	0	0	0	1	1	0	2	0
308	TRINITY_DN298615_c0_g2	2.93533365168917	11.8035406980898	9.38877441787195	0.00548924387700662	0.034460871803926	Q9ZQG9	TRINITY_DN298615_c0_g2_i1	2.8e-111	Glucan endo-1,3-beta-glucosidase 14 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 14) ((1->3)-beta-glucanase 14) (Beta-1,3-endoglucanase 14) (Beta-1,3-glucanase 14)	carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555]; defense response [GO:0006952]	anchored component of plasma membrane [GO:0046658]; cell wall [GO:0005618]; cytoplasm [GO:0005737]; extracellular region [GO:0005576]; nucleus [GO:0005634]	glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]	GO:0005576; GO:0005618; GO:0005634; GO:0005737; GO:0005975; GO:0006952; GO:0042973; GO:0046658; GO:0071555	reviewed	Arabidopsis thaliana (Mouse-ear cress)	2929	1342	10151	944	908	1652	2199	1575	1251	617	847	2596	6414	2597	3176
309	TRINITY_DN298618_c0_g1	20.0363674152951	8.15989808814809	218.56759581293	3.02653202687688e-13	1.83668953395763e-11	A2XUN8	TRINITY_DN298618_c0_g1_i1	3.9e-71	Pachytene checkpoint protein 2 homolog	meiotic cell cycle [GO:0051321]		ATP binding [GO:0005524]	GO:0005524; GO:0051321	reviewed	Oryza sativa subsp. indica (Rice)	584	625	428	320	395	326	185	1	0	1	2	0	0	0	1
310	TRINITY_DN298802_c0_g2	-9.96515115542764	10.1391362698447	36.3548279046323	3.7585502817035e-06	6.32212669666975e-05	Q9M7I7	TRINITY_DN298802_c0_g2_i1	3.5e-11	Chlorophyllase-2, chloroplastic (AtCLH2) (EC 3.1.1.14) (Chlorophyll-chlorophyllido hydrolase 2) (Chlase 2)	chlorophyll catabolic process [GO:0015996]	chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]	chlorophyllase activity [GO:0047746]; pheophytinase b activity [GO:0102293]	GO:0009507; GO:0015996; GO:0031969; GO:0047746; GO:0102293	reviewed	Arabidopsis thaliana (Mouse-ear cress)	94	7	7	105	4	9	47	4309	2332	363	325	4132	3077	3020	643
311	TRINITY_DN298805_c0_g1	23.9462696309034	10.7346330272477	288.29314031753	1.61512513178658e-14	2.08283845119977e-12	A9UNU6	TRINITY_DN298805_c0_g1_i2	3.4e-72	Bystin	rRNA processing [GO:0006364]	cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; preribosome, small subunit precursor [GO:0030688]	snoRNA binding [GO:0030515]	GO:0005634; GO:0005730; GO:0005737; GO:0006364; GO:0030515; GO:0030688	reviewed	Monosiga brevicollis (Choanoflagellate)	2588	3574	2973	2630	1619	2177	1011	2	1	0	7	1	0	0	0
312	TRINITY_DN298805_c0_g2	19.0667148737691	5.53839403170212	81.1486871225819	6.88711515205131e-08	1.55588477340137e-06	Q93VG8	TRINITY_DN298805_c0_g2_i2	1.2e-08	DeSI-like protein At4g17486 (EC 3.4.-.-)			peptidase activity [GO:0008233]	GO:0008233	reviewed	Arabidopsis thaliana (Mouse-ear cress)	78	119	58	59	57	47	43	0	0	0	0	0	0	0	0
313	TRINITY_DN298805_c0_g4	20.8454986353356	8.36257880055571	214.195502913986	3.69057316318557e-12	1.52297652534125e-10	A9UNU6	TRINITY_DN298805_c0_g4_i1	3.1e-72	Bystin	rRNA processing [GO:0006364]	cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; preribosome, small subunit precursor [GO:0030688]	snoRNA binding [GO:0030515]	GO:0005634; GO:0005730; GO:0005737; GO:0006364; GO:0030515; GO:0030688	reviewed	Monosiga brevicollis (Choanoflagellate)	256	314	97	646	791	634	339	0	0	0	0	1	0	3	0
314	TRINITY_DN298831_c0_g1	17.2165316962049	7.53566275587544	75.0349253940217	3.29670406826389e-08	8.11704886430149e-07	P00434	TRINITY_DN298831_c0_g1_i1	4.3e-37	Peroxidase P7 (EC 1.11.1.7) (TP7)	hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979]		heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]	GO:0004601; GO:0006979; GO:0020037; GO:0042744; GO:0046872	reviewed	Brassica rapa subsp. rapa (Turnip)	706	433	83	248	199	119	158	0	0	0	0	21	3	1	0
315	TRINITY_DN298832_c0_g1	-4.54242936380082	7.86475195555825	21.7166021666709	0.000108247732801105	0.00132421633604514	Q9LQI7	TRINITY_DN298832_c0_g1_i1	3.2e-18	Probable complex I intermediate-associated protein 30	mitochondrial electron transport, NADH to ubiquinone [GO:0006120]; mitochondrial respiratory chain complex I assembly [GO:0032981]	mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]	unfolded protein binding [GO:0051082]	GO:0005739; GO:0005747; GO:0006120; GO:0032981; GO:0051082	reviewed	Arabidopsis thaliana (Mouse-ear cress)	79	77	68	20	12	40	41	748	528	477	442	313	238	449	240
316	TRINITY_DN298832_c1_g1	-9.16027214998507	7.38967154890798	54.8204116759086	1.56294526675139e-07	3.20352026529507e-06	A4FV84	TRINITY_DN298832_c1_g1_i6	3.5e-13	mRNA turnover protein 4 homolog (Ribosome assembly factor MRTO4)	nuclear-transcribed mRNA catabolic process [GO:0000956]; ribosomal large subunit assembly [GO:0000027]; ribosomal large subunit biogenesis [GO:0042273]; rRNA processing [GO:0006364]	cytoplasm [GO:0005737]; nucleolus [GO:0005730]; preribosome, large subunit precursor [GO:0030687]		GO:0000027; GO:0000956; GO:0005730; GO:0005737; GO:0006364; GO:0030687; GO:0042273	reviewed	Bos taurus (Bovine)	35	77	29	1	0	2	2	638	538	458	298	128	187	310	238
317	TRINITY_DN298834_c0_g1	20.6738907423999	9.58817979768917	250.466625619994	7.21583744331571e-14	6.03595051001679e-12	Q10179	TRINITY_DN298834_c0_g1_i1	5.3e-77	Putative glycine--tRNA ligase (EC 6.1.1.14) (Diadenosine tetraphosphate synthetase) (Ap4A synthetase) (EC 2.7.7.-) (Glycyl-tRNA synthetase) (GlyRS)	cytoplasmic translation [GO:0002181]; diadenosine tetraphosphate biosynthetic process [GO:0015966]; glycyl-tRNA aminoacylation [GO:0006426]; mitochondrial glycyl-tRNA aminoacylation [GO:0070150]; mitochondrial translation [GO:0032543]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]	ATP binding [GO:0005524]; glycine-tRNA ligase activity [GO:0004820]; protein dimerization activity [GO:0046983]; transferase activity [GO:0016740]	GO:0002181; GO:0004820; GO:0005524; GO:0005737; GO:0005739; GO:0005759; GO:0005829; GO:0006426; GO:0015966; GO:0016740; GO:0032543; GO:0046983; GO:0070150	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	796	1229	387	1131	1605	1440	802	0	0	0	3	1	0	2	3
318	TRINITY_DN298834_c0_g2	20.7571451705515	8.41391600123808	205.48278651294	5.76264485119391e-13	3.30284922489725e-11	Q9HA82	TRINITY_DN298834_c0_g2_i1	1.6e-17	Ceramide synthase 4 (CerS4) (LAG1 longevity assurance homolog 4)	ceramide biosynthetic process [GO:0046513]; sphingolipid biosynthetic process [GO:0030148]	endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nuclear membrane [GO:0031965]	DNA binding [GO:0003677]; sphingosine N-acyltransferase activity [GO:0050291]	GO:0003677; GO:0005783; GO:0005789; GO:0016021; GO:0030148; GO:0031965; GO:0046513; GO:0050291	reviewed	Homo sapiens (Human)	422	494	417	566	520	483	328	0	0	0	1	0	0	3	0
319	TRINITY_DN298836_c0_g1	-3.15611017962101	9.29662530619195	16.3376987009427	0.000505697137564222	0.00487580261919398	Q84RR2	TRINITY_DN298836_c0_g1_i1	1e-161	Probable E3 ubiquitin-protein ligase ARI2 (EC 2.3.2.31) (ARIADNE-like protein ARI2) (Protein ariadne homolog 2) (RING-type E3 ubiquitin transferase ARI2)	positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; ubiquitin-dependent protein catabolic process [GO:0006511]	cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]	metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]	GO:0000151; GO:0000209; GO:0005737; GO:0006511; GO:0031624; GO:0032436; GO:0046872; GO:0061630	reviewed	Arabidopsis thaliana (Mouse-ear cress)	539	364	260	113	30	78	145	1739	1407	1424	690	591	897	984	791
320	TRINITY_DN298841_c2_g1	17.4334731725652	10.4512928852667	276.908654721209	2.48384053865956e-14	2.65085740246597e-12	Q86FP7	TRINITY_DN298841_c2_g1_i1	3.1e-57	40S ribosomal protein S23	cytoplasmic translation [GO:0002181]	cytosolic small ribosomal subunit [GO:0022627]; polysomal ribosome [GO:0042788]; rough endoplasmic reticulum [GO:0005791]	structural constituent of ribosome [GO:0003735]	GO:0002181; GO:0003735; GO:0005791; GO:0022627; GO:0042788	reviewed	Dermacentor variabilis (American dog tick)	1470.82	1245.09	869.62	2118.48	2533.05	2705.69	1704.13	9.73	12.14	3.89	3.15	3.05	1.77	16.34	5.05
321	TRINITY_DN298843_c0_g1	21.3996836154872	7.38253974543802	162.575646488894	4.52114546504829e-11	1.59010741071869e-09	Q55D99	TRINITY_DN298843_c0_g1_i1	5.2e-62	Serine/threonine-protein kinase pakA (dPAKa) (EC 2.7.11.1) (dpak1)	activation of protein kinase activity [GO:0032147]; aggregation involved in sorocarp development [GO:0031152]; cell motility [GO:0048870]; chemotaxis [GO:0006935]; chemotaxis to cAMP [GO:0043327]; establishment of cell polarity [GO:0030010]; establishment or maintenance of cell polarity [GO:0007163]; mitotic cytokinesis [GO:0000281]; myosin II filament assembly [GO:0031036]; phagocytosis [GO:0006909]; positive regulation of cytokinesis [GO:0032467]; regulation of sorocarp development [GO:0031156]; response to differentiation-inducing factor 1 [GO:1903013]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098]	cell cortex [GO:0005938]; cell trailing edge [GO:0031254]; cleavage furrow [GO:0032154]; cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; cytosol [GO:0005829]; phagocytic cup base [GO:0097204]	ATP binding [GO:0005524]; metal ion binding [GO:0046872]; myosin II binding [GO:0045159]; protein serine/threonine kinase activity [GO:0004674]	GO:0000281; GO:0004674; GO:0005524; GO:0005737; GO:0005829; GO:0005856; GO:0005938; GO:0006909; GO:0006935; GO:0007163; GO:0023014; GO:0030010; GO:0031036; GO:0031098; GO:0031152; GO:0031156; GO:0031254; GO:0032147; GO:0032154; GO:0032467; GO:0043327; GO:0045159; GO:0046872; GO:0048870; GO:0097204; GO:1903013	reviewed	Dictyostelium discoideum (Slime mold)	418	733	190	139	177	154	77	0	0	0	1	0	0	0	0
322	TRINITY_DN298848_c3_g2	8.08012134139688	4.12963057170333	10.3256831211473	0.00384908602134741	0.0263616153061059	O04204	TRINITY_DN298848_c3_g2_i1	3.8e-18	60S acidic ribosomal protein P0-1	cytoplasmic translation [GO:0002181]; ribosomal large subunit assembly [GO:0000027]	cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]	large ribosomal subunit rRNA binding [GO:0070180]; structural constituent of ribosome [GO:0003735]	GO:0000027; GO:0002181; GO:0003735; GO:0022625; GO:0022626; GO:0070180	reviewed	Arabidopsis thaliana (Mouse-ear cress)	12	1	94.05	0	5	5	4	1	0	4	0	2	0	0	3
323	TRINITY_DN298862_c0_g3	-5.97075688026849	6.99680816290664	23.5288874054952	6.73419282016918e-05	0.000857708920922782	Q8VWF1	TRINITY_DN298862_c0_g3_i1	1.1e-109	SH3 domain-containing protein 2	cell plate formation involved in plant-type cell wall biogenesis [GO:0009920]; clathrin-dependent endocytosis [GO:0072583]	autophagosome membrane [GO:0000421]; cell plate [GO:0009504]; clathrin-coated vesicle [GO:0030136]; cytosol [GO:0005829]; endosome [GO:0005768]; late endosome [GO:0005770]; nucleus [GO:0005634]; plasma membrane [GO:0005886]	ubiquitin binding [GO:0043130]	GO:0000421; GO:0005634; GO:0005768; GO:0005770; GO:0005829; GO:0005886; GO:0009504; GO:0009920; GO:0030136; GO:0043130; GO:0072583	reviewed	Arabidopsis thaliana (Mouse-ear cress)	40	20	22	8	3	14	12	300	300	250	222	208	139	330	171
324	TRINITY_DN298863_c0_g2	-3.7889341894672	6.74098765080045	10.6326607878033	0.00343551601656718	0.0238942069017425	Q8S8S9	TRINITY_DN298863_c0_g2_i1	4.8e-65	Methylesterase 1 (AtMES1) (EC 3.1.1.-)	defense response to fungus, incompatible interaction [GO:0009817]; jasmonic acid metabolic process [GO:0009694]; salicylic acid metabolic process [GO:0009696]; systemic acquired resistance [GO:0009627]		hydrolase activity, acting on ester bonds [GO:0016788]; methyl indole-3-acetate esterase activity [GO:0080030]; methyl jasmonate esterase activity [GO:0080032]; methyl salicylate esterase activity [GO:0080031]	GO:0009627; GO:0009694; GO:0009696; GO:0009817; GO:0016788; GO:0080030; GO:0080031; GO:0080032	reviewed	Arabidopsis thaliana (Mouse-ear cress)	11	15	20	51	40	29	52	225	212	131	103	209	91	284	98
325	TRINITY_DN299020_c1_g1	-8.61244004200714	7.72617855639205	50.7039145527575	2.95286591906681e-07	5.78425317690618e-06	Q940Q8	TRINITY_DN299020_c1_g1_i1	9.6e-217	Probable beta-1,4-xylosyltransferase IRX10L (EC 2.4.2.-) (Glucuronoxylan glucuronosyltransferase 1) (AtGUT1) (Glucuronoxylan glucuronosyltransferase 2) (AtGUT2) (Protein IRREGULAR XYLEM 10-like) (Xylan xylosyltransferase IRX10L)	cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; glucuronoxylan biosynthetic process [GO:0010417]; plant-type secondary cell wall biogenesis [GO:0009834]; protein glycosylation [GO:0006486]; xylan biosynthetic process [GO:0045492]	endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]	1,4-beta-D-xylan synthase activity [GO:0047517]; glucuronoxylan glucuronosyltransferase activity [GO:0080116]	GO:0000139; GO:0005768; GO:0005794; GO:0005802; GO:0006486; GO:0009834; GO:0010417; GO:0016021; GO:0042546; GO:0045492; GO:0047517; GO:0071555; GO:0080116	reviewed	Arabidopsis thaliana (Mouse-ear cress)	46	16	11	2	4	10	3	760	757	556	571	241	195	215	260
326	TRINITY_DN299024_c0_g1	9.903917475783	3.76824294162643	11.1982214798766	0.00320964738521505	0.0229273071154568	Q162S8	TRINITY_DN299024_c0_g1_i1	2.6e-29	ATP synthase gamma chain (ATP synthase F1 sector gamma subunit) (F-ATPase gamma subunit)	plasma membrane ATP synthesis coupled proton transport [GO:0042777]	plasma membrane [GO:0005886]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]	ATP binding [GO:0005524]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]	GO:0005524; GO:0005886; GO:0042777; GO:0045261; GO:0046933	reviewed	Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans)	1	223	0	0	2	0	0	0	0	0	1	0	0	0	0
327	TRINITY_DN299032_c0_g1	20.8925443546444	8.6257792507716	185.014081733298	1.70666157642601e-12	7.62515467412782e-11	Q9SBJ1	TRINITY_DN299032_c0_g1_i1	1.2e-69	[Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial (AtPDHK) (Pyruvate dehydrogenase kinase) (EC 2.7.11.2)	protein autophosphorylation [GO:0046777]	mitochondrion [GO:0005739]	ATP binding [GO:0005524]; histidine phosphotransfer kinase activity [GO:0009927]; protein homodimerization activity [GO:0042803]; pyruvate dehydrogenase (acetyl-transferring) kinase activity [GO:0004740]	GO:0004740; GO:0005524; GO:0005739; GO:0009927; GO:0042803; GO:0046777	reviewed	Arabidopsis thaliana (Mouse-ear cress)	693	542	520	473	545	563	371	0	0	0	4	0	0	1	0
328	TRINITY_DN299040_c0_g1	21.0316382777587	13.1855857402865	153.860440968408	1.11643512457192e-11	4.21386184213426e-10	Q943E6	TRINITY_DN299040_c0_g1_i1	6.6e-10	16.9 kDa class I heat shock protein 2 (16.9 kDa heat shock protein 2) (OsHsp16.9B)	protein complex oligomerization [GO:0051259]; protein folding [GO:0006457]; response to heat [GO:0009408]; response to hydrogen peroxide [GO:0042542]; response to reactive oxygen species [GO:0000302]; response to salt stress [GO:0009651]	cytoplasm [GO:0005737]	protein self-association [GO:0043621]; unfolded protein binding [GO:0051082]	GO:0000302; GO:0005737; GO:0006457; GO:0009408; GO:0009651; GO:0042542; GO:0043621; GO:0051082; GO:0051259	reviewed	Oryza sativa subsp. japonica (Rice)	17451	4129	56460	110	294	137	192	5	5	8	28	1	0	0	1
329	TRINITY_DN299042_c0_g1	-10.9615925926004	2.93795346648013	11.5110162638389	0.00323644969410321	0.0230271535706883	Q5ZKE7	TRINITY_DN299042_c0_g1_i2	8.1e-51	UMP-CMP kinase (EC 2.7.4.14) (Deoxycytidylate kinase) (CK) (dCMP kinase) (Nucleoside-diphosphate kinase) (EC 2.7.4.6) (Uridine monophosphate/cytidine monophosphate kinase) (UMP/CMP kinase) (UMP/CMPK)	'de novo' pyrimidine nucleobase biosynthetic process [GO:0006207]; nucleoside diphosphate phosphorylation [GO:0006165]; nucleoside triphosphate biosynthetic process [GO:0009142]; pyrimidine nucleotide biosynthetic process [GO:0006221]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; cytidylate kinase activity [GO:0004127]; nucleoside diphosphate kinase activity [GO:0004550]; uridylate kinase activity [GO:0009041]	GO:0004127; GO:0004550; GO:0005524; GO:0005634; GO:0005737; GO:0006165; GO:0006207; GO:0006221; GO:0009041; GO:0009142	reviewed	Gallus gallus (Chicken)	0	0	0	0	0	0	0	69	1	42	1	0	6	2	0
330	TRINITY_DN299202_c0_g2	-9.64177669380038	4.75691393228095	9.43981600518094	0.00577137740991441	0.0360129296042038	P16397	TRINITY_DN299202_c0_g2_i1	6.6e-59	Bacillopeptidase F (EC 3.4.21.-) (90 kDa serine proteinase) (Esterase) (RP-I protease)		extracellular region [GO:0005576]	serine-type endopeptidase activity [GO:0004252]	GO:0004252; GO:0005576	reviewed	Bacillus subtilis (strain 168)	0	0	0	0	1	0	9	395	5	106	5	0	26	2	0
331	TRINITY_DN299209_c0_g1	4.96304008149527	11.4067192757216	46.4754458442927	5.90234953628646e-07	1.10713768574585e-05	Q56X46	TRINITY_DN299209_c0_g1_i1	3.5e-15	Mechanosensitive ion channel protein 2, chloroplastic (Mechanosensitive channel of small conductance-like 2) (MscS-Like protein 2)	chloroplast fission [GO:0010020]; ion transport [GO:0006811]; transmembrane transport [GO:0055085]	chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid envelope [GO:0009526]		GO:0006811; GO:0009507; GO:0009526; GO:0010020; GO:0016021; GO:0031969; GO:0055085	reviewed	Arabidopsis thaliana (Mouse-ear cress)	1859	2448	2210	2766	6175	1042	6372	1561	1272	1128	720	837	763	550	494
332	TRINITY_DN299255_c0_g1	-8.05358556720299	7.81839211605712	47.8631718113653	4.68047642435273e-07	8.99756182197e-06	O80450	TRINITY_DN299255_c0_g1_i9	7e-07	Trihelix transcription factor GT-3b (Transcription factor GT-1-like) (Trihelix DNA-binding protein GT-3b)	regulation of transcription, DNA-templated [GO:0006355]	mediator complex [GO:0016592]; nucleolus [GO:0005730]; nucleus [GO:0005634]	DNA-binding transcription factor activity [GO:0003700]; sequence-specific DNA binding [GO:0043565]	GO:0003700; GO:0005634; GO:0005730; GO:0006355; GO:0016592; GO:0043565	reviewed	Arabidopsis thaliana (Mouse-ear cress)	55	27	10	11	2	8	4	1148	966	719	340	194	127	302	202
333	TRINITY_DN299255_c0_g5	-8.05655578544499	5.77381560547983	23.8845012267654	6.1495597393756e-05	0.000793036974723645	M4MR97	TRINITY_DN299255_c0_g5_i1	2.9e-79	Ribonuclease J (RNase J) (EC 3.1.-.-)	rRNA processing [GO:0006364]	cytoplasm [GO:0005737]	5'-3' exoribonuclease activity [GO:0004534]; endoribonuclease activity [GO:0004521]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]	GO:0003723; GO:0004521; GO:0004534; GO:0005737; GO:0006364; GO:0008270	reviewed	Sinorhizobium meliloti (strain Sm2011 / Rm2011 / 2011)	7	7	4	1	1	4	1	275	215	111	94	74	22	71	48
334	TRINITY_DN299263_c0_g1	17.6957531678913	4.89030117904777	61.0028022636208	4.98878444416273e-07	9.47256923600224e-06	P22612	TRINITY_DN299263_c0_g1_i1	4.9e-22	cAMP-dependent protein kinase catalytic subunit gamma (PKA C-gamma) (EC 2.7.11.11)	activation of protein kinase A activity [GO:0034199]; blood coagulation [GO:0007596]; cellular response to glucagon stimulus [GO:0071377]; high-density lipoprotein particle assembly [GO:0034380]; male gonad development [GO:0008584]; renal water homeostasis [GO:0003091]; spermatogenesis [GO:0007283]; stimulatory C-type lectin receptor signaling pathway [GO:0002223]	ciliary base [GO:0097546]; cytosol [GO:0005829]; intercellular bridge [GO:0045171]; nucleoplasm [GO:0005654]	ATP binding [GO:0005524]; cAMP-dependent protein kinase activity [GO:0004691]	GO:0002223; GO:0003091; GO:0004691; GO:0005524; GO:0005654; GO:0005829; GO:0007283; GO:0007596; GO:0008584; GO:0034199; GO:0034380; GO:0045171; GO:0071377; GO:0097546	reviewed	Homo sapiens (Human)	42	64	40	31	31	40	25	0	0	0	0	0	0	0	0
335	TRINITY_DN299263_c0_g2	11.5140217237107	2.37326595653225	22.8546891466058	0.000172965952813228	0.00199007295151279	P22612	TRINITY_DN299263_c0_g2_i1	2.6e-22	cAMP-dependent protein kinase catalytic subunit gamma (PKA C-gamma) (EC 2.7.11.11)	activation of protein kinase A activity [GO:0034199]; blood coagulation [GO:0007596]; cellular response to glucagon stimulus [GO:0071377]; high-density lipoprotein particle assembly [GO:0034380]; male gonad development [GO:0008584]; renal water homeostasis [GO:0003091]; spermatogenesis [GO:0007283]; stimulatory C-type lectin receptor signaling pathway [GO:0002223]	ciliary base [GO:0097546]; cytosol [GO:0005829]; intercellular bridge [GO:0045171]; nucleoplasm [GO:0005654]	ATP binding [GO:0005524]; cAMP-dependent protein kinase activity [GO:0004691]	GO:0002223; GO:0003091; GO:0004691; GO:0005524; GO:0005654; GO:0005829; GO:0007283; GO:0007596; GO:0008584; GO:0034199; GO:0034380; GO:0045171; GO:0071377; GO:0097546	reviewed	Homo sapiens (Human)	4	5	10	2	3	4	2	0	0	0	0	0	0	0	0
336	TRINITY_DN299263_c0_g3	17.0141150909608	4.56422730019181	51.7597294354455	1.48421952145125e-06	2.65529446178707e-05	P34099	TRINITY_DN299263_c0_g3_i1	1e-17	cAMP-dependent protein kinase catalytic subunit (EC 2.7.11.11) (Dd GPK2) (DdPK3)	activation of GTPase activity [GO:0090630]; c-di-GMP signaling [GO:0061939]; chemotaxis to cAMP [GO:0043327]; culmination involved in sorocarp development [GO:0031154]; negative regulation of gene expression [GO:0010629]; negative regulation of GTPase activity [GO:0034260]; negative regulation of protein kinase activity [GO:0006469]; positive regulation of chemorepellent activity [GO:1903669]; positive regulation of gene expression [GO:0010628]; protein kinase A signaling [GO:0010737]; protein phosphorylation [GO:0006468]; regulation of macropinocytosis [GO:1905301]; regulation of MAP kinase activity [GO:0043405]; regulation of sorocarp spore cell differentiation [GO:1901261]; regulation of sorocarp stalk cell differentiation [GO:0031285]; regulation of sporulation resulting in formation of a cellular spore [GO:0042173]; regulation of transcription, DNA-templated [GO:0006355]; response to curcumin [GO:1904643]; signal transduction [GO:0007165]; sorocarp morphogenesis [GO:0031288]; sorocarp spore cell differentiation [GO:0044671]; sporulation resulting in formation of a cellular spore [GO:0030435]	cAMP-dependent protein kinase complex [GO:0005952]; centrosome [GO:0005813]; cytosol [GO:0005829]	ATP binding [GO:0005524]; cAMP-dependent protein kinase activity [GO:0004691]; protein kinase A regulatory subunit binding [GO:0034237]	GO:0004691; GO:0005524; GO:0005813; GO:0005829; GO:0005952; GO:0006355; GO:0006468; GO:0006469; GO:0007165; GO:0010628; GO:0010629; GO:0010737; GO:0030435; GO:0031154; GO:0031285; GO:0031288; GO:0034237; GO:0034260; GO:0042173; GO:0043327; GO:0043405; GO:0044671; GO:0061939; GO:0090630; GO:1901261; GO:1903669; GO:1904643; GO:1905301	reviewed	Dictyostelium discoideum (Slime mold)	38	34	41	18	19	34	17	0	0	0	0	0	0	0	0
337	TRINITY_DN299270_c6_g1	3.24138588905604	9.77237765272267	17.2609532307352	0.000382047795207614	0.00383908417586872	Q94F39	TRINITY_DN299270_c6_g1_i1	3.8e-34	Ninja-family protein AFP3 (ABI five-binding protein 3) (ABI5-binding protein 3)	negative regulation of transcription, DNA-templated [GO:0045892]; signal transduction [GO:0007165]	nucleus [GO:0005634]		GO:0005634; GO:0007165; GO:0045892	reviewed	Arabidopsis thaliana (Mouse-ear cress)	2131	750	1815	498	250	254	435	587	580	286	139	417	545	672	534
338	TRINITY_DN299270_c7_g1	-6.26060392707018	6.63411419225209	21.1979558648051	0.000124468915942701	0.00149314455365372	P35266	TRINITY_DN299270_c7_g1_i1	7.9e-60	60S ribosomal protein L17-1	hematopoietic stem cell homeostasis [GO:0061484]; translation [GO:0006412]	large ribosomal subunit [GO:0015934]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0006412; GO:0015934; GO:0061484	reviewed	Hordeum vulgare (Barley)	26	5	12	11	3	11	9	219	185	185	173	115	136	356	150
339	TRINITY_DN299275_c0_g1	21.7993681708512	10.0157703938965	321.751034301621	4.96765801024534e-15	1.18268473397764e-12	P54069	TRINITY_DN299275_c0_g1_i1	1.3e-33	Protein bem46		endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]	hydrolase activity, acting on ester bonds [GO:0016788]	GO:0005783; GO:0016021; GO:0016788	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	1675	1741	1466	1484	1479	1378	782	1	0	0	2	1	0	4	2
340	TRINITY_DN299276_c0_g3	10.9938258787148	4.10913614923206	24.7407897090654	4.95636136254566e-05	0.000658366455668619	Q94A79	TRINITY_DN299276_c0_g3_i1	4.5e-93	Protein DEFECTIVE IN MERISTEM SILENCING 3 (Protein INVOLVED IN DE NOVO 1)	DNA methylation [GO:0006306]; gene silencing by RNA [GO:0031047]; regulation of production of siRNA involved in chromatin silencing by small RNA [GO:0070921]; RNA-directed DNA methylation [GO:0080188]	RNA polymerase V complex [GO:0000419]	protein homodimerization activity [GO:0042803]	GO:0000419; GO:0006306; GO:0031047; GO:0042803; GO:0070921; GO:0080188	reviewed	Arabidopsis thaliana (Mouse-ear cress)	15	9	13	24	41	8	38	0	0	3	0	0	1	1	0
341	TRINITY_DN299276_c0_g5	2.55225502245932	8.57776764656747	9.7506262111661	0.00477897570557421	0.03107338195116	Q9LNJ5	TRINITY_DN299276_c0_g5_i1	1.1e-108	Transcription factor bHLH13 (Basic helix-loop-helix protein 13) (AtbHLH13) (bHLH 13) (Transcription factor EN 39) (bHLH transcription factor bHLH013)	negative regulation of gene expression [GO:0010629]; regulation of transcription, DNA-templated [GO:0006355]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	DNA-binding transcription factor activity [GO:0003700]; protein dimerization activity [GO:0046983]; transcription regulatory region DNA binding [GO:0044212]	GO:0003700; GO:0005634; GO:0005737; GO:0006355; GO:0010629; GO:0044212; GO:0046983	reviewed	Arabidopsis thaliana (Mouse-ear cress)	382	272	133	188	469	156	865	591	536	404	286	86	99	167	126
342	TRINITY_DN299291_c1_g1	-3.95978999189377	9.10694094607143	26.6036319312078	3.14319171129105e-05	0.000424811281504184	Q9LZ23	TRINITY_DN299291_c1_g1_i1	1.4e-27	ACT domain-containing protein ACR12 (Protein ACT DOMAIN REPEATS 12)		chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]		GO:0009507; GO:0009535; GO:0009570	reviewed	Arabidopsis thaliana (Mouse-ear cress)	151	298	191	69	67	68	156	1704	1645	1541	679	404	512	631	1004
343	TRINITY_DN299296_c0_g1	-6.09854323806581	7.33516395213302	27.4698848198327	2.55888935011804e-05	0.000353525762774333	Q6KAE5	TRINITY_DN299296_c0_g1_i1	1.3e-143	Probable E3 ubiquitin-protein ligase XBOS32 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBOS32) (RING-type E3 ubiquitin transferase XBOS32) (XB3 protein homolog 2)	protein ubiquitination [GO:0016567]		metal ion binding [GO:0046872]; transferase activity [GO:0016740]	GO:0016567; GO:0016740; GO:0046872	reviewed	Oryza sativa subsp. japonica (Rice)	86	31	20	5	5	9	16	433	412	337	203	258	187	348	264
344	TRINITY_DN299653_c1_g2	18.2549608166824	5.62832708903221	23.5665871619696	0.000147963958246509	0.00173465322262479	O02056	TRINITY_DN299653_c1_g2_i1	3.8e-115	60S ribosomal protein L4	determination of adult lifespan [GO:0008340]; translation [GO:0006412]	cytosolic large ribosomal subunit [GO:0022625]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0006412; GO:0008340; GO:0022625	reviewed	Caenorhabditis elegans	1	0	53	0	113	192	0	0	0	0	0	0	0	0	0
345	TRINITY_DN299656_c3_g3	8.88915187094355	2.23319978945525	11.2731051136155	0.003727726397163	0.0257529312482577	P00054	TRINITY_DN299656_c3_g3_i2	5.8e-39	Cytochrome c		mitochondrial intermembrane space [GO:0005758]; respirasome [GO:0070469]	electron transfer activity [GO:0009055]; heme binding [GO:0020037]; metal ion binding [GO:0046872]	GO:0005758; GO:0009055; GO:0020037; GO:0046872; GO:0070469	reviewed	Sesamum indicum (Oriental sesame) (Sesamum orientale)	4	24	7	0	0	1	0	0	0	0	0	0	0	0	0
346	TRINITY_DN299658_c5_g1	-7.04976316891072	8.54776446000242	58.9575613549728	8.52928743338602e-08	1.91290902944418e-06	Q93WU6	TRINITY_DN299658_c5_g1_i2	6.3e-16	Probable WRKY transcription factor 74 (WRKY DNA-binding protein 74)		nucleus [GO:0005634]	calmodulin binding [GO:0005516]; DNA-binding transcription factor activity [GO:0003700]; sequence-specific DNA binding [GO:0043565]	GO:0003700; GO:0005516; GO:0005634; GO:0043565	reviewed	Arabidopsis thaliana (Mouse-ear cress)	107	37	26	20	18	25	24	1070	1120	981	698	570	483	758	385
347	TRINITY_DN299722_c1_g1	21.8954079739039	6.93211552398475	140.623957014583	1.1799190608943e-09	3.28995449861969e-08	Q5JKB0	TRINITY_DN299722_c1_g1_i1	2.9e-120	DNA replication licensing factor MCM4 (EC 3.6.4.12) (Minichromosome maintenance protein 4) (OsMCM4)	DNA strand elongation involved in DNA replication [GO:0006271]; DNA unwinding involved in DNA replication [GO:0006268]; double-strand break repair via break-induced replication [GO:0000727]; mitotic DNA replication initiation [GO:1902975]; pollen development [GO:0009555]; pre-replicative complex assembly involved in nuclear cell cycle DNA replication [GO:0006267]	cytosol [GO:0005829]; MCM complex [GO:0042555]; nucleus [GO:0005634]; THO complex [GO:0000347]	ATP binding [GO:0005524]; DNA helicase activity [GO:0003678]; DNA replication origin binding [GO:0003688]; metal ion binding [GO:0046872]; single-stranded DNA binding [GO:0003697]	GO:0000347; GO:0000727; GO:0003678; GO:0003688; GO:0003697; GO:0005524; GO:0005634; GO:0005829; GO:0006267; GO:0006268; GO:0006271; GO:0009555; GO:0042555; GO:0046872; GO:1902975	reviewed	Oryza sativa subsp. japonica (Rice)	215	146	174	151	172	178	89	0	0	0	0	0	0	0	0
348	TRINITY_DN299726_c0_g1	-2.56135312808574	8.49914240840056	10.787695936803	0.00324538302440402	0.0230377533498405	Q0IZS0	TRINITY_DN299726_c0_g1_i1	2.9e-38	Nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic (EC 2.4.2.19) (Quinolinate phosphoribosyltransferase [decarboxylating])	NAD biosynthetic process [GO:0009435]; quinolinate catabolic process [GO:0034213]	chloroplast [GO:0009507]; cytoplasm [GO:0005737]	nicotinate-nucleotide diphosphorylase (carboxylating) activity [GO:0004514]	GO:0004514; GO:0005737; GO:0009435; GO:0009507; GO:0034213	reviewed	Oryza sativa subsp. japonica (Rice)	250	193	155	74	79	54	146	752	623	661	429	466	293	707	565
349	TRINITY_DN299729_c1_g1	20.4531956127758	8.24668583584893	254.209577191101	6.16679593739391e-14	5.30173150728726e-12	Q7ZY11	TRINITY_DN299729_c1_g1_i1	1.6e-27	Eukaryotic translation initiation factor 2A (eIF-2A)			translation initiation factor activity [GO:0003743]	GO:0003743	reviewed	Xenopus laevis (African clawed frog)	440	609	212	386	566	492	291	1	1	0	1	0	0	1	0
350	TRINITY_DN299750_c2_g1	-9.07659359056418	9.1847537878682	45.7993045356411	6.61998293820201e-07	1.22687707746918e-05	O82504	TRINITY_DN299750_c2_g1_i2	2.4e-18	RNA-dependent RNA polymerase 2 (AtRDRP2) (EC 2.7.7.48) (Protein SILENCING MOVEMENT DEFICIENT 1) (RNA-directed RNA polymerase 2)	defense response to fungus [GO:0050832]; gene silencing [GO:0016458]; long-distance posttranscriptional gene silencing [GO:0010495]; production of siRNA involved in chromatin silencing by small RNA [GO:0070919]; production of siRNA involved in RNA interference [GO:0030422]	nuclear RNA-directed RNA polymerase complex [GO:0031380]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]	RNA binding [GO:0003723]; RNA-directed 5'-3' RNA polymerase activity [GO:0003968]	GO:0003723; GO:0003968; GO:0005634; GO:0005654; GO:0005730; GO:0010495; GO:0016458; GO:0030422; GO:0031380; GO:0050832; GO:0070919	reviewed	Arabidopsis thaliana (Mouse-ear cress)	127	16	21	20	2	5	26	3228	1582	1107	1196	1316	361	889	255
351	TRINITY_DN299750_c3_g1	3.01829992758566	10.7156276069165	11.6418425246414	0.00238463442376527	0.0181784323683584	Q6AWX0	TRINITY_DN299750_c3_g1_i1	2.2e-108	D-xylose-proton symporter-like 2		integral component of plasma membrane [GO:0005887]; vacuolar membrane [GO:0005774]	carbohydrate:proton symporter activity [GO:0005351]; fructose transmembrane transporter activity [GO:0005353]; glucose transmembrane transporter activity [GO:0005355]	GO:0005351; GO:0005353; GO:0005355; GO:0005774; GO:0005887	reviewed	Arabidopsis thaliana (Mouse-ear cress)	2420	256	1701	1760	1063	1140	2187	1224	729	692	1203	1178	1073	1011	767
352	TRINITY_DN299750_c3_g2	-3.2280576599533	11.5031776069081	12.3887632961669	0.00183453626899851	0.0143596831803775	Q8GV43	TRINITY_DN299750_c3_g2_i8	3.7e-190	Phosphoinositide phospholipase C 6 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC6) (AtPLC6) (AtPLC8) (PI-PLC6)	inositol trisphosphate biosynthetic process [GO:0032959]; lipid catabolic process [GO:0016042]; phosphatidylinositol-mediated signaling [GO:0048015]; release of sequestered calcium ion into cytosol [GO:0051209]	plasma membrane [GO:0005886]	phosphatidylinositol phospholipase C activity [GO:0004435]	GO:0004435; GO:0005886; GO:0016042; GO:0032959; GO:0048015; GO:0051209	reviewed	Arabidopsis thaliana (Mouse-ear cress)	2841	705	533	563	246	600	555	11000	9091	3482	5063	2722	1738	3952	3411
353	TRINITY_DN299750_c3_g3	-11.3548148236491	4.76572842698201	21.6910308046282	0.000108991082872111	0.00132806063578418	Q10QS9	TRINITY_DN299750_c3_g3_i1	7.6e-18	B3 domain-containing protein Os03g0184500		nucleus [GO:0005634]	DNA binding [GO:0003677]	GO:0003677; GO:0005634	reviewed	Oryza sativa subsp. japonica (Rice)	0	0	1	0	0	0	1	29	18	12	6	171	31	28	42
354	TRINITY_DN299755_c1_g3	16.3315264367687	4.26238773285424	47.806749711034	2.47853743117452e-06	4.26170741638063e-05	P34221	TRINITY_DN299755_c1_g3_i1	6.6e-21	Protein phosphatase 2C homolog 3 (PP2C-3) (EC 3.1.3.16)	cellular response to osmotic stress [GO:0071470]; inactivation of MAPK activity [GO:0000188]; negative regulation of stress-activated MAPK cascade [GO:0032873]; protein dephosphorylation [GO:0006470]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	magnesium-dependent protein serine/threonine phosphatase activity [GO:0004724]; MAP kinase serine/threonine phosphatase activity [GO:1990439]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]	GO:0000079; GO:0000188; GO:0004722; GO:0004724; GO:0005634; GO:0005737; GO:0006470; GO:0032873; GO:0046872; GO:0071470; GO:1990439	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	24	54	35	22	19	20	6	0	0	0	0	0	0	0	0
355	TRINITY_DN299755_c1_g4	20.1151775493755	6.66663393737097	116.224795972636	8.6544054367115e-10	2.43503498423837e-08	Q94BX4	TRINITY_DN299755_c1_g4_i1	2e-36	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A (EC 2.4.1.198) (GlcNAc-PI synthesis protein) (Phosphatidylinositol-glycan biosynthesis class A protein)	GPI anchor biosynthetic process [GO:0006506]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]	glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex [GO:0000506]; integral component of membrane [GO:0016021]	phosphatidylinositol N-acetylglucosaminyltransferase activity [GO:0017176]	GO:0000506; GO:0006506; GO:0009846; GO:0009860; GO:0016021; GO:0017176	reviewed	Arabidopsis thaliana (Mouse-ear cress)	196	189	145	120	106	136	73	0	0	1	0	0	0	0	0
356	TRINITY_DN299758_c1_g1	7.23949266644084	3.07106703795763	11.1164323459446	0.00287927211642387	0.0212681317430355	Q38772	TRINITY_DN299758_c1_g1_i1	2.6e-155	Cell division control protein 2 homolog A (EC 2.7.11.22) (EC 2.7.11.23)	cell cycle [GO:0007049]; cell division [GO:0051301]		ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; RNA polymerase II CTD heptapeptide repeat kinase activity [GO:0008353]	GO:0004693; GO:0005524; GO:0007049; GO:0008353; GO:0051301	reviewed	Antirrhinum majus (Garden snapdragon)	3	2	9	8	16	1	18	1	1	0	0	3	1	2	0
357	TRINITY_DN299758_c1_g2	-7.1877004736925	8.86360553296196	51.8794686420933	2.45335881694937e-07	4.8988035731989e-06	P93101	TRINITY_DN299758_c1_g2_i1	2.1e-28	Cell division control protein 2 homolog (EC 2.7.11.22) (EC 2.7.11.23) (p34cdc2)	cell cycle [GO:0007049]; cell division [GO:0051301]		ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; RNA polymerase II CTD heptapeptide repeat kinase activity [GO:0008353]	GO:0004693; GO:0005524; GO:0007049; GO:0008353; GO:0051301	reviewed	Oxybasis rubra (Red goosefoot) (Chenopodium rubrum)	184	45	63	25	6	11	20	2067	1748	1210	738	554	349	811	372
358	TRINITY_DN299782_c2_g3	7.09285983184241	1.81698525065101	9.06638571988943	0.00689367316600925	0.0415095689665343	Q8NK13	TRINITY_DN299782_c2_g3_i1	4.6e-33	E3 ubiquitin ligase complex SCF subunit scon-3 (Sulfur control protein 3) (Sulfur metabolite repression control scon-3)	negative regulation of mitotic metaphase/anaphase transition [GO:0045841]; nuclear membrane biogenesis involved in mitotic nuclear division [GO:0101026]; regulation of strand invasion [GO:0060542]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146]	nuclear SCF ubiquitin ligase complex [GO:0043224]; RAVE complex [GO:0043291]; single-stranded DNA-dependent ATP-dependent DNA helicase complex [GO:0017117]	ubiquitin protein ligase activity [GO:0061630]	GO:0017117; GO:0031146; GO:0043224; GO:0043291; GO:0045841; GO:0060542; GO:0061630; GO:0101026	reviewed	Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)	0	6	1	1	8	0	2	0	0	2	0	0	0	0	0
359	TRINITY_DN299783_c0_g3	12.9307652414718	3.89212011954649	31.4303385223665	1.72467906764161e-05	0.000248273568109339	O95372	TRINITY_DN299783_c0_g3_i1	9.7e-21	Acyl-protein thioesterase 2 (APT-2) (EC 3.1.2.-) (Lysophospholipase II) (LPL-II) (LysoPLA II)	axon guidance [GO:0007411]; fatty acid metabolic process [GO:0006631]; protein depalmitoylation [GO:0002084]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; extracellular exosome [GO:0070062]; Golgi stack [GO:0005795]	cadherin binding [GO:0045296]; carboxylic ester hydrolase activity [GO:0052689]; palmitoyl-(protein) hydrolase activity [GO:0008474]	GO:0002084; GO:0005737; GO:0005795; GO:0005829; GO:0006631; GO:0007411; GO:0008474; GO:0045296; GO:0052689; GO:0070062	reviewed	Homo sapiens (Human)	49	3	25	10	20	6	9	1	0	1	1	0	0	0	0
360	TRINITY_DN299788_c0_g1	-4.94130895908675	6.14222453166527	10.8133843941248	0.00321500849373449	0.0229273071154568	Q8H1G5	TRINITY_DN299788_c0_g1_i1	1.6e-14	Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 (Protein REI1-LIKE 1) (pre-60S factor REI1 homolog 1)	ribosomal large subunit biogenesis [GO:0042273]	cytosolic large ribosomal subunit [GO:0022625]; preribosome, large subunit precursor [GO:0030687]	nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]	GO:0003676; GO:0008270; GO:0022625; GO:0030687; GO:0042273	reviewed	Arabidopsis thaliana (Mouse-ear cress)	44	11	34	14	1	2	1	241	165	152	151	71	73	86	79
361	TRINITY_DN299789_c0_g1	22.1273074373762	7.03057893412709	157.562609351006	4.92239026658727e-10	1.43724508255543e-08	Q9FG38	TRINITY_DN299789_c0_g1_i1	4.6e-20	Sorting nexin 1 (AtSNX1) (Vacuolar protein sorting-associated protein 5 homolog)	auxin homeostasis [GO:0010252]; endosome to lysosome transport [GO:0008333]; Golgi to vacuole transport [GO:0006896]; positive gravitropism [GO:0009958]; protein targeting to vacuole [GO:0006623]; root development [GO:0048364]	cytosol [GO:0005829]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; intracellular membrane-bounded organelle [GO:0043231]; late endosome membrane [GO:0031902]; membrane [GO:0016020]; multivesicular body [GO:0005771]; retromer complex [GO:0030904]	phosphatidylinositol binding [GO:0035091]	GO:0005768; GO:0005771; GO:0005794; GO:0005829; GO:0006623; GO:0006896; GO:0008333; GO:0009958; GO:0010252; GO:0016020; GO:0030904; GO:0031902; GO:0035091; GO:0043231; GO:0048364	reviewed	Arabidopsis thaliana (Mouse-ear cress)	275	353	170	136	177	157	71	0	0	0	0	0	0	0	0
362	TRINITY_DN299795_c0_g1	-3.49164775885155	12.1769839562746	14.9918819025638	0.000771261452684354	0.00706229052088188	O80910	TRINITY_DN299795_c0_g1_i2	1.2e-90	TOM1-like protein 6	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [GO:0043328]	cytoplasm [GO:0005737]; early endosome [GO:0005769]; early endosome membrane [GO:0031901]; multivesicular body [GO:0005771]; plasma membrane [GO:0005886]	ubiquitin binding [GO:0043130]	GO:0005737; GO:0005769; GO:0005771; GO:0005886; GO:0031901; GO:0043130; GO:0043328	reviewed	Arabidopsis thaliana (Mouse-ear cress)	2621	1434	2590	366	296	873	718	12609	18036	12119	5990	2931	2758	8216	4421
363	TRINITY_DN310027_c1_g1	24.8318887742732	9.73463079929006	366.889910754359	2.38044324228408e-14	2.63123994102473e-12	P31584	TRINITY_DN310027_c1_g1_i2	2.1e-75	GTP-binding protein yptV1	protein transport [GO:0015031]	plasma membrane [GO:0005886]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]	GO:0003924; GO:0005525; GO:0005886; GO:0015031	reviewed	Volvox carteri (Green alga)	1555	1683	1548	976	1037	1050	472	0	0	0	0	0	0	2	1
364	TRINITY_DN310080_c0_g1	-2.63035096397261	8.32226960986521	9.29939527416741	0.00568204835142217	0.0355990681126551	Q949Z1	TRINITY_DN310080_c0_g1_i1	2.6e-42	Polygalacturonase At1g48100 (PG) (EC 3.2.1.15) (Pectinase At1g48100)	carbohydrate metabolic process [GO:0005975]; plant-type cell wall modification involved in multidimensional cell growth [GO:0009831]	cell wall [GO:0005618]; extracellular region [GO:0005576]	polygalacturonase activity [GO:0004650]	GO:0004650; GO:0005576; GO:0005618; GO:0005975; GO:0009831	reviewed	Arabidopsis thaliana (Mouse-ear cress)	177	116	160	141	29	54	100	581	534	515	549	306	445	564	513
365	TRINITY_DN310080_c0_g3	7.07245020254858	1.43689103065171	10.6950235674783	0.00450099242214549	0.0297027111866531	Q949Z1	TRINITY_DN310080_c0_g3_i1	1.6e-09	Polygalacturonase At1g48100 (PG) (EC 3.2.1.15) (Pectinase At1g48100)	carbohydrate metabolic process [GO:0005975]; plant-type cell wall modification involved in multidimensional cell growth [GO:0009831]	cell wall [GO:0005618]; extracellular region [GO:0005576]	polygalacturonase activity [GO:0004650]	GO:0004650; GO:0005576; GO:0005618; GO:0005975; GO:0009831	reviewed	Arabidopsis thaliana (Mouse-ear cress)	3	2	0	1	0	1	0	0	0	0	0	0	0	0	0
366	TRINITY_DN310082_c1_g1	3.39993046783166	13.6038498671738	10.1309177623814	0.00413965413941676	0.0277320986179543	Q9LMR3	TRINITY_DN310082_c1_g1_i3	2.4e-13	Arogenate dehydrogenase 2, chloroplastic (EC 1.3.1.78) (TyrAAT2)	tyrosine biosynthetic process [GO:0006571]	chloroplast [GO:0009507]	arogenate dehydrogenase (NADP+) activity [GO:0033730]; prephenate dehydrogenase (NAD+) activity [GO:0008977]; prephenate dehydrogenase (NADP+) activity [GO:0004665]	GO:0004665; GO:0006571; GO:0008977; GO:0009507; GO:0033730	reviewed	Arabidopsis thaliana (Mouse-ear cress)	5770.72	2385.29	6928	14696.01	17552.75	11325	27864.99	3079.28	921.76	2654.07	10253	8638.92	5477.02	3090.44	5562.98
367	TRINITY_DN310084_c1_g1	19.6760247969959	5.83433807778759	89.0228890371401	3.54618984060134e-08	8.64209256430011e-07	Q29C43	TRINITY_DN310084_c1_g1_i2	1.6e-40	Neutral ceramidase (N-CDase) (NCDase) (EC 3.5.1.23) (Acylsphingosine deacylase) (N-acylsphingosine amidohydrolase)	ceramide catabolic process [GO:0046514]	extracellular region [GO:0005576]	ceramidase activity [GO:0102121]; N-acylsphingosine amidohydrolase activity [GO:0017040]	GO:0005576; GO:0017040; GO:0046514; GO:0102121	reviewed	Drosophila pseudoobscura pseudoobscura (Fruit fly)	96	163	61	59	58	78	50	0	0	0	0	0	0	0	0
368	TRINITY_DN310084_c1_g2	18.5420478678592	6.8631299646877	111.346676817145	2.7049889747236e-10	8.20778517330348e-09	Q55G11	TRINITY_DN310084_c1_g2_i1	7.7e-32	Neutral ceramidase B (N-CDase B) (NCDase B) (EC 3.5.1.23) (Acylsphingosine deacylase 2B) (N-acylsphingosine amidohydrolase 2B)	ceramide catabolic process [GO:0046514]; ceramide metabolic process [GO:0006672]; long-chain fatty acid biosynthetic process [GO:0042759]; sphingosine biosynthetic process [GO:0046512]	extracellular region [GO:0005576]	ceramidase activity [GO:0102121]; N-acylsphingosine amidohydrolase activity [GO:0017040]	GO:0005576; GO:0006672; GO:0017040; GO:0042759; GO:0046512; GO:0046514; GO:0102121	reviewed	Dictyostelium discoideum (Slime mold)	140	140	71	185	251	204	102	0	0	0	1	0	0	1	0
369	TRINITY_DN310085_c0_g1	20.3282945794383	9.24967928396319	289.021295527947	1.57211865135539e-14	2.08283845119977e-12	B8ATT7	TRINITY_DN310085_c0_g1_i1	7.3e-19	Villin-4	actin filament capping [GO:0051693]; actin filament organization [GO:0007015]; actin filament severing [GO:0051014]	actin filament bundle [GO:0032432]; cytoplasm [GO:0005737]	actin filament binding [GO:0051015]	GO:0005737; GO:0007015; GO:0032432; GO:0051014; GO:0051015; GO:0051693	reviewed	Oryza sativa subsp. indica (Rice)	1082	1955	1177	584	740	578	312	4	0	1	2	0	1	0	2
370	TRINITY_DN310729_c0_g1	9.19871425816083	3.54997827673309	9.14240540489188	0.00670059173876748	0.0406633949636967	Q9LD90	TRINITY_DN310729_c0_g1_i1	6.6e-138	H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (CBF5 homolog) (Dyskerin) (Nopp-140-associated protein of 57 kDa homolog) (AtNAP57) (Nucleolar protein NAP57 homolog)	box H/ACA snoRNA 3'-end processing [GO:0000495]; mRNA pseudouridine synthesis [GO:1990481]; rRNA pseudouridine synthesis [GO:0031118]; snRNA pseudouridine synthesis [GO:0031120]	box H/ACA snoRNP complex [GO:0031429]; cytosol [GO:0005829]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]	pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]	GO:0000495; GO:0003723; GO:0005730; GO:0005829; GO:0009506; GO:0009982; GO:0031118; GO:0031120; GO:0031429; GO:1990481	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	186	0	0	2	0	0	2	0	0	0	0	0	0	0
371	TRINITY_DN310742_c0_g4	-5.80337821450099	4.98428648493289	8.84238553035061	0.00679174997568579	0.0411359416335568	Q8W4I6	TRINITY_DN310742_c0_g4_i1	8.9e-120	GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic (Protein BRZ-INSENSITIVE-PALE GREEN 2)	brassinosteroid mediated signaling pathway [GO:0009742]; chloroplast organization [GO:0009658]; chloroplast rRNA processing [GO:1901259]; developmental process [GO:0032502]; positive regulation of carotenoid biosynthetic process [GO:1904143]; positive regulation of chlorophyll biosynthetic process [GO:1902326]; regulation of transcription, DNA-templated [GO:0006355]; response to absence of light [GO:0009646]; response to brassinosteroid [GO:0009741]; response to light stimulus [GO:0009416]; response to salt stress [GO:0009651]	chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]	GTP binding [GO:0005525]; hydrolase activity [GO:0016787]; rRNA binding [GO:0019843]	GO:0005525; GO:0006355; GO:0009416; GO:0009507; GO:0009570; GO:0009646; GO:0009651; GO:0009658; GO:0009741; GO:0009742; GO:0016787; GO:0019843; GO:0032502; GO:1901259; GO:1902326; GO:1904143	reviewed	Arabidopsis thaliana (Mouse-ear cress)	15	1	2	7	0	1	3	86	85	52	55	56	27	86	11
372	TRINITY_DN310742_c1_g1	8.03377821493676	11.7343132748651	88.6929761117689	2.3117295044949e-09	6.27614282141378e-08	P36591	TRINITY_DN310742_c1_g1_i4	7.5e-11	Dihydrofolate reductase (EC 1.5.1.3)	dihydrofolate metabolic process [GO:0046452]; folic acid metabolic process [GO:0046655]; one-carbon metabolic process [GO:0006730]; tetrahydrofolate biosynthetic process [GO:0046654]	cytosol [GO:0005829]; mitochondrion [GO:0005739]	ATP binding [GO:0005524]; dihydrofolate reductase activity [GO:0004146]; NADP binding [GO:0050661]	GO:0004146; GO:0005524; GO:0005739; GO:0005829; GO:0006730; GO:0046452; GO:0046654; GO:0046655; GO:0050661	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	2690.39	2515.48	3064.81	2534.71	5399.83	3590.36	9188.18	587.98	341.99	410.98	333	662.98	357.99	327.38	240
373	TRINITY_DN310742_c1_g3	-9.4845694843726	4.92146485117913	18.0245362275642	0.000304582936371229	0.00320640880295563	Q5Z9J0	TRINITY_DN310742_c1_g3_i4	1.5e-161	Mitogen-activated protein kinase 12 (MAP kinase 12) (EC 2.7.11.24) (Blast- and wound-induced MAP kinase 1) (MAP kinase 1) (OsBWMK1) (OsMAPK1)	defense response [GO:0006952]; intracellular signal transduction [GO:0035556]; regulation of gene expression [GO:0010468]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]	GO:0004707; GO:0005524; GO:0005634; GO:0005737; GO:0006952; GO:0010468; GO:0035556	reviewed	Oryza sativa subsp. japonica (Rice)	3	7	0	1	0	0	1	127	33	38	16	82	162	15	7
374	TRINITY_DN310743_c0_g1	8.2670466186457	2.10792163896321	13.2487725712701	0.00162668005694402	0.0130281132610342	Q7ZV82	TRINITY_DN310743_c0_g1_i1	1.5e-34	60S ribosomal protein L27	erythrocyte differentiation [GO:0030218]; translation [GO:0006412]	cytoplasmic side of rough endoplasmic reticulum membrane [GO:0098556]; cytosolic large ribosomal subunit [GO:0022625]; large ribosomal subunit [GO:0015934]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0006412; GO:0015934; GO:0022625; GO:0030218; GO:0098556	reviewed	Danio rerio (Zebrafish) (Brachydanio rerio)	5	6	8	0	2	1	1	0	0	0	0	0	0	0	1
375	TRINITY_DN310743_c5_g1	10.0998991933546	4.73645686276975	13.2287811524146	0.00137633055611762	0.011299053239215	O74538	TRINITY_DN310743_c5_g1_i6	2.5e-23	60S ribosomal protein L27-B	cytoplasmic translation [GO:0002181]	cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]	structural constituent of ribosome [GO:0003735]	GO:0002181; GO:0003735; GO:0005829; GO:0022625	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	8	3	111	0	1	48	5	1	2	1	1	0	0	0	7
376	TRINITY_DN310744_c0_g3	20.4216815875119	7.97587522012126	197.493160544525	8.69801489331915e-13	4.53254956583416e-11	Q7JP68	TRINITY_DN310744_c0_g3_i1	1.4e-14	cAMP-dependent protein kinase, catalytic subunit-like (EC 2.7.11.11)		cytoplasm [GO:0005737]	ATP binding [GO:0005524]; cAMP-dependent protein kinase activity [GO:0004691]	GO:0004691; GO:0005524; GO:0005737	reviewed	Caenorhabditis elegans	435	913	341	280	277	287	159	0	1	0	1	1	0	0	0
377	TRINITY_DN310745_c1_g1	-3.24140580766736	13.9546776801059	12.5090229481242	0.0017597471386117	0.0138939219234776	Q9FIG7	TRINITY_DN310745_c1_g1_i1	3.4e-14	Dirigent protein 2 (AtDIR2)		apoplast [GO:0048046]		GO:0048046	reviewed	Arabidopsis thaliana (Mouse-ear cress)	6084	2129	5496	4595	2558	3125	4393	13368	10172	19513	19546	19865	33027	78598	18444
378	TRINITY_DN310746_c0_g1	20.1992280300939	9.0166888929408	239.73014570347	1.14636421413024e-13	8.65365181154415e-12	Q8X1F5	TRINITY_DN310746_c0_g1_i1	1.3e-29	Autophagy-related protein 18 (Glucose-induced selective autophagy protein 12)	autophagy [GO:0006914]; protein transport [GO:0015031]	endosome membrane [GO:0010008]; phagophore assembly site membrane [GO:0034045]; vacuolar membrane [GO:0005774]		GO:0005774; GO:0006914; GO:0010008; GO:0015031; GO:0034045	reviewed	Komagataella pastoris (Yeast) (Pichia pastoris)	533	1100	276	983	892	887	452	0	0	1	2	2	0	2	0
379	TRINITY_DN310746_c0_g3	18.8034913208293	5.66271939780552	75.398701338747	1.1580945176931e-07	2.42182603531092e-06	Q8X1F5	TRINITY_DN310746_c0_g3_i1	6.4e-17	Autophagy-related protein 18 (Glucose-induced selective autophagy protein 12)	autophagy [GO:0006914]; protein transport [GO:0015031]	endosome membrane [GO:0010008]; phagophore assembly site membrane [GO:0034045]; vacuolar membrane [GO:0005774]		GO:0005774; GO:0006914; GO:0010008; GO:0015031; GO:0034045	reviewed	Komagataella pastoris (Yeast) (Pichia pastoris)	28	122	16	91	129	94	27	0	0	0	0	0	0	0	0
380	TRINITY_DN310761_c3_g1	-5.92966668959657	7.5782502219002	19.4161172438681	0.000203892711036717	0.00228640558209652	Q9FH51	TRINITY_DN310761_c3_g1_i2	7.4e-17	Protein FLX-like 4 (AtFLXL4)	cell differentiation [GO:0030154]; flower development [GO:0009908]			GO:0009908; GO:0030154	reviewed	Arabidopsis thaliana (Mouse-ear cress)	63	91	86	0	2	18	5	599	467	526	269	216	251	299	279
381	TRINITY_DN310761_c3_g3	-5.22823684267904	9.4661550905322	32.3203260196817	8.62818974014982e-06	0.000135554554547024	Q9CAT7	TRINITY_DN310761_c3_g3_i2	7.1e-08	Nascent polypeptide-associated complex subunit beta	response to salt stress [GO:0009651]	cytosol [GO:0005829]; nascent polypeptide-associated complex [GO:0005854]; polysomal ribosome [GO:0042788]		GO:0005829; GO:0005854; GO:0009651; GO:0042788	reviewed	Arabidopsis thaliana (Mouse-ear cress)	158	194	184	63	26	123	76	1566	1282	1309	1342	1590	528	1715	856
382	TRINITY_DN310761_c3_g4	-8.95178831558239	1.85906678479109	13.1766693714327	0.00191061617435281	0.0148576810543265	Q9SMW7	TRINITY_DN310761_c3_g4_i1	5.3e-14	Basic transcription factor 3 (AtBTF3) (Nascent polypeptide-associated complex subunit beta)	response to salt stress [GO:0009651]	cytosol [GO:0005829]; nascent polypeptide-associated complex [GO:0005854]; polysomal ribosome [GO:0042788]		GO:0005829; GO:0005854; GO:0009651; GO:0042788	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	0	0	0	0	0	5	4	2	3	2	2	7	1
383	TRINITY_DN310763_c4_g1	-4.63463131965189	5.76628783844315	10.3126922287795	0.00386775360020014	0.0264253805576588	Q8RXU6	TRINITY_DN310763_c4_g1_i2	1.3e-29	WD repeat-containing protein PCN (Protein POPCORN)	embryo development ending in seed dormancy [GO:0009793]; lateral root formation [GO:0010311]; leaf development [GO:0048366]; leaf vascular tissue pattern formation [GO:0010305]; meristem growth [GO:0035266]; meristem maintenance [GO:0010073]; post-embryonic plant organ development [GO:0090696]; regulation of auxin polar transport [GO:2000012]; root meristem growth [GO:0010449]	nucleus [GO:0005634]		GO:0005634; GO:0009793; GO:0010073; GO:0010305; GO:0010311; GO:0010449; GO:0035266; GO:0048366; GO:0090696; GO:2000012	reviewed	Arabidopsis thaliana (Mouse-ear cress)	22	27	8	8	2	2	12	244	154	160	78	44	34	76	49
384	TRINITY_DN310765_c2_g2	22.0451048494374	9.95731684659055	237.655652122314	1.25636568067683e-13	9.14744634541312e-12	Q54KM6	TRINITY_DN310765_c2_g2_i1	3.8e-43	Kynurenine--oxoglutarate transaminase (EC 2.6.1.7) (Glutamine transaminase K) (EC 4.4.1.13) (Glutamine--phenylpyruvate transaminase) (EC 2.6.1.64) (Kynurenine aminotransferase)	biosynthetic process [GO:0009058]; L-kynurenine catabolic process [GO:0097053]	cytoplasm [GO:0005737]; mitochondrion [GO:0005739]	cysteine-S-conjugate beta-lyase activity [GO:0047804]; glutamine-phenylpyruvate transaminase activity [GO:0047316]; kynurenine-oxoglutarate transaminase activity [GO:0016212]; pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483]	GO:0005737; GO:0005739; GO:0008483; GO:0009058; GO:0016212; GO:0030170; GO:0047316; GO:0047804; GO:0097053	reviewed	Dictyostelium discoideum (Slime mold)	1943	2751	1663	1082	933	1211	511	0	0	0	4	1	0	3	0
385	TRINITY_DN310768_c2_g1	-3.3449241064751	8.72516674946339	15.1950662166346	0.000722878757990424	0.00669853220353402	Q9FNQ1	TRINITY_DN310768_c2_g1_i1	1.2e-29	DExH-box ATP-dependent RNA helicase DExH14 (EC 3.6.4.13) (BRR2 homolog C) (AtBRR2C) (Pre-mRNA-splicing helicase BRR2C)	DNA dealkylation involved in DNA repair [GO:0006307]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380]	nucleus [GO:0005634]; spliceosomal complex [GO:0005681]	ATP binding [GO:0005524]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; ATP-dependent helicase activity [GO:0008026]; mRNA binding [GO:0003729]	GO:0003729; GO:0005524; GO:0005634; GO:0005681; GO:0006307; GO:0006397; GO:0008026; GO:0008380; GO:0043140	reviewed	Arabidopsis thaliana (Mouse-ear cress)	196	79.62	93	62	101	72	234	1659.98	1034.24	808.76	480.81	466.58	452.89	645.84	439.97
386	TRINITY_DN310768_c2_g2	-2.36078172427893	8.77314978044711	8.54196938821926	0.00765030770919839	0.0452728534607438	F4JCU0	TRINITY_DN310768_c2_g2_i1	3.6e-08	SUPPRESSOR OF ABI3-5 (REQUIRED FOR SNC4-1D protein 1) (Splicing factor SUA)	mRNA processing [GO:0006397]; mRNA splicing, via spliceosome [GO:0000398]; regulation of RNA splicing [GO:0043484]	nucleus [GO:0005634]; spliceosomal complex [GO:0005681]	metal ion binding [GO:0046872]; RNA binding [GO:0003723]	GO:0000398; GO:0003723; GO:0005634; GO:0005681; GO:0006397; GO:0043484; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)	352	397.38	333	88	21	54	112	912.63	687.24	679.53	328.18	423.73	612.11	983.16	648.03
387	TRINITY_DN311070_c0_g2	-3.12743930269118	9.87949353930809	19.9361588387474	0.000176138310462547	0.00201161649771802	O48782	TRINITY_DN311070_c0_g2_i1	4.2e-06	Heme oxygenase 1, chloroplastic (AtHO1) (EC 1.14.14.18) (Protein GENOMES UNCOUPLED 2) (Protein REVERSAL OF THE DET PHENOTYPE 4)	carotenoid biosynthetic process [GO:0016117]; cellular response to UV-C [GO:0071494]; chloroplast-nucleus signaling pathway [GO:0010019]; flavonoid biosynthetic process [GO:0009813]; heme oxidation [GO:0006788]; photosynthesis [GO:0015979]; phytochromobilin biosynthetic process [GO:0010024]; regulation of meristem growth [GO:0010075]; regulation of stomatal movement [GO:0010119]	chloroplast [GO:0009507]	heme binding [GO:0020037]; heme oxygenase (decyclizing) activity [GO:0004392]; metal ion binding [GO:0046872]	GO:0004392; GO:0006788; GO:0009507; GO:0009813; GO:0010019; GO:0010024; GO:0010075; GO:0010119; GO:0015979; GO:0016117; GO:0020037; GO:0046872; GO:0071494	reviewed	Arabidopsis thaliana (Mouse-ear cress)	437	683	587	144	101	114	229	3562	1964	1979	1066	798	880	1554	1225
388	TRINITY_DN311070_c0_g3	-9.95532516473976	8.84252799649673	68.5136755057168	2.35367947685897e-08	6.0203619676682e-07	Q9LU21	TRINITY_DN311070_c0_g3_i1	8.2e-27	Photosynthetic NDH subunit of subcomplex B 3, chloroplastic (Protein PnsB3) (NDH-DEPENDENT CYCLIC ELECTRON FLOW 4)	photosynthetic electron transport in photosystem I [GO:0009773]	chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]	2 iron, 2 sulfur cluster binding [GO:0051537]; electron transfer activity [GO:0009055]; metal ion binding [GO:0046872]	GO:0009055; GO:0009507; GO:0009535; GO:0009773; GO:0010598; GO:0046872; GO:0051537	reviewed	Arabidopsis thaliana (Mouse-ear cress)	48	6	19	14	3	5	20	2032	696	733	704	940	545	1102	857
389	TRINITY_DN311077_c1_g1	-7.23038826517763	9.72111497591315	47.9357338729542	4.62464731586903e-07	8.94580215163415e-06	Q9SX33	TRINITY_DN311077_c1_g1_i1	0	Putative phospholipid-transporting ATPase 9 (AtALA9) (EC 7.6.2.1) (Aminophospholipid flippase 9)	Golgi vesicle budding [GO:0048194]; phospholipid translocation [GO:0045332]	Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]	ATPase-coupled phospholipid transporter activity [GO:0004012]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]	GO:0000139; GO:0000287; GO:0004012; GO:0005524; GO:0005802; GO:0005886; GO:0016021; GO:0045332; GO:0048194	reviewed	Arabidopsis thaliana (Mouse-ear cress)	287	34	38	54	25	59	38	2646	2068	1830	1049	1446	1192	2411	1039
390	TRINITY_DN311412_c1_g1	-6.67501114278395	7.9688658699267	30.0087705763066	1.42978824527189e-05	0.000210723553291261	A8IEF3	TRINITY_DN311412_c1_g1_i1	4.9e-116	Protein arginine N-methyltransferase 1 (EC 2.1.1.-)	histone arginine methylation [GO:0034969]; peptidyl-arginine methylation, to asymmetrical-dimethyl arginine [GO:0019919]; regulation of transcription, DNA-templated [GO:0006355]	cytosol [GO:0005829]; motile cilium [GO:0031514]; nucleus [GO:0005634]	histone-arginine N-methyltransferase activity [GO:0008469]; protein-arginine omega-N asymmetric methyltransferase activity [GO:0035242]	GO:0005634; GO:0005829; GO:0006355; GO:0008469; GO:0019919; GO:0031514; GO:0034969; GO:0035242	reviewed	Chlamydomonas reinhardtii (Chlamydomonas smithii)	49	7	24	37	32	16	19	666	584	442	853	552	56	426	206
391	TRINITY_DN311414_c0_g1	22.0342162174369	9.31070399782299	322.427209620046	4.85651903432776e-15	1.18268473397764e-12	Q54HP3	TRINITY_DN311414_c0_g1_i1	3.8e-39	Developmentally-regulated GTP-binding protein 1 homolog (DRG-1)	cytoplasmic translation [GO:0002181]	cytoplasm [GO:0005737]	GTP binding [GO:0005525]	GO:0002181; GO:0005525; GO:0005737	reviewed	Dictyostelium discoideum (Slime mold)	929	1351	732	900	981	882	530	1	0	2	0	0	0	2	0
392	TRINITY_DN311418_c0_g2	23.5063441439112	7.72626011474691	223.53280372765	3.17044524033491e-11	1.14099163009727e-09	Q5DX34	TRINITY_DN311418_c0_g2_i2	4.8e-29	X-linked retinitis pigmentosa GTPase regulator homolog (Gut granule loss protein 4)	negative regulation of axon extension [GO:0030517]	axon [GO:0030424]; synapse [GO:0045202]	guanyl-nucleotide exchange factor activity [GO:0005085]	GO:0005085; GO:0030424; GO:0030517; GO:0045202	reviewed	Caenorhabditis elegans	397	442	225	331	253	279	160	0	0	0	0	0	0	0	0
393	TRINITY_DN311418_c0_g3	9.43694170020433	1.93050901906282	16.978841926576	0.000711777015543787	0.00661546505437844	Q9VR91	TRINITY_DN311418_c0_g3_i1	1.1e-10	Probable E3 ubiquitin-protein ligase HERC2 (EC 2.3.2.26) (HECT domain and RCC1-like domain-containing protein 2) (HECT-type E3 ubiquitin transferase HERC2)	cellular response to DNA damage stimulus [GO:0006974]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]	centriole [GO:0005814]; cytoplasm [GO:0005737]; nucleus [GO:0005634]	metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]	GO:0004842; GO:0005634; GO:0005737; GO:0005814; GO:0006974; GO:0016567; GO:0043161; GO:0046872	reviewed	Drosophila melanogaster (Fruit fly)	0	3	2	3	4	2	4	0	0	0	0	0	0	0	0
394	TRINITY_DN311419_c1_g1	5.91401830228844	13.0086260168177	52.8334810982701	2.11539146348287e-07	4.25138738927239e-06	Q9LZP8	TRINITY_DN311419_c1_g1_i1	8.3e-14	bZIP transcription factor 53 (AtbZIP53)	cellular response to starvation [GO:0009267]; hypotonic response [GO:0006971]; positive regulation of seed maturation [GO:2000693]; positive regulation of transcription, DNA-templated [GO:0045893]	nucleus [GO:0005634]	DNA-binding transcription factor activity [GO:0003700]; nutrient reservoir activity [GO:0045735]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription regulatory region DNA binding [GO:0044212]	GO:0003700; GO:0005634; GO:0006971; GO:0009267; GO:0043565; GO:0044212; GO:0045735; GO:0045893; GO:0046982; GO:2000693	reviewed	Arabidopsis thaliana (Mouse-ear cress)	5394	4145	6468	13141	9356	7846	18698	3343	2768	2514	3485	1228	1884	756	779
395	TRINITY_DN311419_c1_g2	4.25399086665385	6.28673114563285	13.1264377262129	0.00142478351482142	0.0116351054838319	Q9SJG6	TRINITY_DN311419_c1_g2_i1	5.3e-82	Pentatricopeptide repeat-containing protein At2g42920, chloroplastic	RNA modification [GO:0009451]	chloroplast [GO:0009507]		GO:0009451; GO:0009507	reviewed	Arabidopsis thaliana (Mouse-ear cress)	41	198	71	88	88	42	116	46	22	39	13	24	49	58	29
396	TRINITY_DN311463_c2_g1	14.7385081638035	4.40725839586043	18.8189357323028	0.000318153423881021	0.00332188481093649	A0SXL6	TRINITY_DN311463_c2_g1_i1	2.3e-57	Elongation factor 2 (EF-2)	hematopoietic progenitor cell differentiation [GO:0002244]; positive regulation of translation [GO:0045727]	aggresome [GO:0016235]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; polysome [GO:0005844]; synapse [GO:0045202]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; protein kinase binding [GO:0019901]; translation elongation factor activity [GO:0003746]	GO:0002244; GO:0003746; GO:0003924; GO:0005525; GO:0005634; GO:0005737; GO:0005829; GO:0005844; GO:0005886; GO:0016235; GO:0019901; GO:0045202; GO:0045727	reviewed	Callithrix jacchus (White-tufted-ear marmoset)	0	0	35	0	52	66.04	0	0	0	0	0	0	1	0	0
397	TRINITY_DN311463_c3_g2	9.73012588876297	4.83808132995243	15.9690715033046	0.000566757493800311	0.00538071915126369	P09445	TRINITY_DN311463_c3_g2_i5	2.5e-34	Elongation factor 2 (EF-2)		cytoplasm [GO:0005737]; nucleus [GO:0005634]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; translation elongation factor activity [GO:0003746]	GO:0003746; GO:0003924; GO:0005525; GO:0005634; GO:0005737	reviewed	Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus)	13	11	128	0	2	43	1	2	0	2	2	2	2	3	2
398	TRINITY_DN311468_c0_g1	20.2051843918467	9.48197743917277	197.299555486831	8.78684891599514e-13	4.53254956583416e-11	Q8NC42	TRINITY_DN311468_c0_g1_i2	1.2e-12	E3 ubiquitin-protein ligase RNF149 (EC 2.3.2.27) (DNA polymerase-transactivated protein 2) (RING finger protein 149) (RING-type E3 ubiquitin transferase RNF149)	cellular response to drug [GO:0035690]; negative regulation of MAPK cascade [GO:0043409]; regulation of protein stability [GO:0031647]; ubiquitin-dependent protein catabolic process [GO:0006511]	integral component of membrane [GO:0016021]; membrane [GO:0016020]	metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]	GO:0006511; GO:0016020; GO:0016021; GO:0031647; GO:0035690; GO:0043409; GO:0046872; GO:0061630	reviewed	Homo sapiens (Human)	1397	3328	1402	470	537	593	326	0	2	0	5	0	0	4	0
399	TRINITY_DN311475_c2_g1	-1.91616820673015	9.83907495360602	8.50100424167075	0.00777637030170024	0.0457563993987875	O64827	TRINITY_DN311475_c2_g1_i1	5e-24	Histone-lysine N-methyltransferase SUVR5 (EC 2.1.1.43) (C2H2 zinc finger-SET histone methyltransferase) (Protein C2H2 SET) (Protein SET DOMAIN GROUP 6) (Suppressor of variegation 3-9-related protein 5) (Su(var)3-9-related protein 5)	chromatin remodeling [GO:0006338]; chromatin silencing [GO:0006342]; histone lysine methylation [GO:0034968]; regulation of histone H3-K9 dimethylation [GO:1900109]	chromosome [GO:0005694]; nucleus [GO:0005634]	DNA-binding transcription factor activity [GO:0003700]; histone-lysine N-methyltransferase activity [GO:0018024]; sequence-specific DNA binding [GO:0043565]; zinc ion binding [GO:0008270]	GO:0003700; GO:0005634; GO:0005694; GO:0006338; GO:0006342; GO:0008270; GO:0018024; GO:0034968; GO:0043565; GO:1900109	reviewed	Arabidopsis thaliana (Mouse-ear cress)	509	511	356	316	255	234	566	2595	1624	1847	794	865	1270	1396	951
400	TRINITY_DN311476_c1_g3	10.1683666495761	4.66085892071724	15.0126742860582	0.00076615146030046	0.00703631682382767	O22347	TRINITY_DN311476_c1_g3_i3	1.7e-33	Tubulin alpha-1 chain (Alpha-1-tubulin)	microtubule-based process [GO:0007017]	cytoplasm [GO:0005737]; microtubule [GO:0005874]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; structural constituent of cytoskeleton [GO:0005200]	GO:0003924; GO:0005200; GO:0005525; GO:0005737; GO:0005874; GO:0007017	reviewed	Eleusine indica (Goosegrass) (Cynosurus indicus)	10	1	131.77	2	3	24	3	0	0	4	0	3.48	1	0	1
401	TRINITY_DN311478_c1_g1	4.8339653337461	15.9062970212267	29.8117424113925	1.49427020277153e-05	0.000219183235904165	Q9SND9	TRINITY_DN311478_c1_g1_i1	3.7e-34	Uncharacterized acetyltransferase At3g50280 (EC 2.3.1.-)			transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]	GO:0016747	reviewed	Arabidopsis thaliana (Mouse-ear cress)	82261	56255	69343	39254	111466	31416	107019	26619	22125	30282	23174	21685	22380	26907	10646
402	TRINITY_DN311478_c1_g2	3.96335680331741	17.1591642969159	16.2366939550864	0.000521679870200435	0.00501428322444207	P51106	TRINITY_DN311478_c1_g2_i2	1e-77	Dihydroflavonol 4-reductase (DFR) (EC 1.1.1.219) (Dihydrokaempferol 4-reductase) (Flavanone 4-reductase) (FNR) (EC 1.1.1.234)	anthocyanin-containing compound biosynthetic process [GO:0009718]		coenzyme binding [GO:0050662]; dihydrokaempferol 4-reductase activity [GO:0045552]; flavanone 4-reductase activity [GO:0047890]	GO:0009718; GO:0045552; GO:0047890; GO:0050662	reviewed	Hordeum vulgare (Barley)	154468	56085	194778	146036	192996	78100	224311	64156	52104	86501	60132	71954	76408	94652	45025
403	TRINITY_DN311484_c1_g1	19.165907808135	5.70079145921827	83.2796513718664	5.72498973799177e-08	1.33224385256275e-06	O15066	TRINITY_DN311484_c1_g1_i1	1.2e-137	Kinesin-like protein KIF3B (HH0048) (Microtubule plus end-directed kinesin motor 3B) [Cleaved into: Kinesin-like protein KIF3B, N-terminally processed]	anterograde axonal transport [GO:0008089]; antigen processing and presentation of exogenous peptide antigen via MHC class II [GO:0019886]; determination of left/right symmetry [GO:0007368]; intraciliary transport involved in cilium assembly [GO:0035735]; microtubule-based movement [GO:0007018]; mitotic centrosome separation [GO:0007100]; mitotic spindle assembly [GO:0090307]; mitotic spindle organization [GO:0007052]; plus-end-directed vesicle transport along microtubule [GO:0072383]; positive regulation of cytokinesis [GO:0032467]; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum [GO:0006890]	axon cytoplasm [GO:1904115]; centrosome [GO:0005813]; ciliary tip [GO:0097542]; cilium [GO:0005929]; cytosol [GO:0005829]; extracellular exosome [GO:0070062]; kinesin complex [GO:0005871]; kinesin II complex [GO:0016939]; membrane [GO:0016020]; microtubule [GO:0005874]; microtubule cytoskeleton [GO:0015630]; midbody [GO:0030496]; plus-end kinesin complex [GO:0005873]; spindle [GO:0005819]	ATPase activity [GO:0016887]; ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, plus-end-directed [GO:0008574]; intraciliary transport particle B binding [GO:0120170]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; Rho GTPase binding [GO:0017048]	GO:0003777; GO:0005524; GO:0005813; GO:0005819; GO:0005829; GO:0005871; GO:0005873; GO:0005874; GO:0005929; GO:0006890; GO:0007018; GO:0007052; GO:0007100; GO:0007368; GO:0008017; GO:0008089; GO:0008574; GO:0015630; GO:0016020; GO:0016887; GO:0016939; GO:0017048; GO:0019886; GO:0030496; GO:0032467; GO:0035735; GO:0070062; GO:0072383; GO:0090307; GO:0097542; GO:0120170; GO:1904115	reviewed	Homo sapiens (Human)	62	58	48	93	92	74	50	0	0	0	0	0	0	0	0
404	TRINITY_DN311484_c1_g3	23.164623193981	8.19111683807449	235.433150232041	1.54183539140738e-12	7.08809467838635e-11	Q14697	TRINITY_DN311484_c1_g3_i1	2.2e-21	Neutral alpha-glucosidase AB (EC 3.2.1.207) (Alpha-glucosidase 2) (Glucosidase II subunit alpha)	carbohydrate metabolic process [GO:0005975]; N-glycan processing [GO:0006491]; protein folding [GO:0006457]	endoplasmic reticulum lumen [GO:0005788]; extracellular exosome [GO:0070062]; glucosidase II complex [GO:0017177]; Golgi apparatus [GO:0005794]; intracellular membrane-bounded organelle [GO:0043231]; melanosome [GO:0042470]; membrane [GO:0016020]	alpha-glucosidase activity [GO:0090599]; carbohydrate binding [GO:0030246]; glucan 1,3-alpha-glucosidase activity [GO:0033919]; RNA binding [GO:0003723]	GO:0003723; GO:0005788; GO:0005794; GO:0005975; GO:0006457; GO:0006491; GO:0016020; GO:0017177; GO:0030246; GO:0033919; GO:0042470; GO:0043231; GO:0070062; GO:0090599	reviewed	Homo sapiens (Human)	577	400	679	236	293	285	254	0	0	1	0	0	0	0	0
405	TRINITY_DN311484_c1_g5	15.2967603084957	3.85096822469622	42.188979864767	5.44305763190442e-06	9.00869698970276e-05	Q52828	TRINITY_DN311484_c1_g5_i2	6.5e-23	Protein GstA			transferase activity [GO:0016740]	GO:0016740	reviewed	Rhizobium leguminosarum	20	21	11	20	22	20	9	0	0	0	0	0	0	0	0
406	TRINITY_DN311486_c4_g1	-5.07181738507173	5.92617228414174	11.0939977339042	0.00290276113484908	0.0213397760388549	Q8LPS1	TRINITY_DN311486_c4_g1_i2	3.5e-11	Long chain acyl-CoA synthetase 6, peroxisomal (EC 6.2.1.3)	fatty acid metabolic process [GO:0006631]; multicellular organism development [GO:0007275]; response to ozone [GO:0010193]	glyoxysomal membrane [GO:0046861]; membrane [GO:0016020]; peroxisome [GO:0005777]	acyl-CoA ligase activity [GO:0003996]; ATP binding [GO:0005524]; decanoate-CoA ligase activity [GO:0102391]; long-chain fatty acid-CoA ligase activity [GO:0004467]	GO:0003996; GO:0004467; GO:0005524; GO:0005777; GO:0006631; GO:0007275; GO:0010193; GO:0016020; GO:0046861; GO:0102391	reviewed	Arabidopsis thaliana (Mouse-ear cress)	26	34	11	1	1	4	13	126	156	204	45	69	107	111	82
407	TRINITY_DN311493_c0_g1	13.9541887566718	5.41843270871887	19.0266401232429	0.00022779863426448	0.00246341994537583	P13607	TRINITY_DN311493_c0_g1_i2	0	Sodium/potassium-transporting ATPase subunit alpha (Na(+)/K(+) ATPase alpha subunit) (EC 7.2.2.13) (Sodium pump subunit alpha)	adult locomotory behavior [GO:0008344]; ATP hydrolysis coupled proton transport [GO:0015991]; cation transport [GO:0006812]; cellular potassium ion homeostasis [GO:0030007]; cellular sodium ion homeostasis [GO:0006883]; chemical synaptic transmission [GO:0007268]; determination of adult lifespan [GO:0008340]; jump response [GO:0007630]; locomotory behavior [GO:0007626]; neuromuscular process [GO:0050905]; potassium ion import across plasma membrane [GO:1990573]; regulation of tube diameter, open tracheal system [GO:0035158]; regulation of tube length, open tracheal system [GO:0035159]; response to mechanical stimulus [GO:0009612]; response to temperature stimulus [GO:0009266]; sensory perception of sound [GO:0007605]; septate junction assembly [GO:0019991]; sodium ion export across plasma membrane [GO:0036376]; synaptic growth at neuromuscular junction [GO:0051124]; tissue homeostasis [GO:0001894]; trachea morphogenesis [GO:0060439]	basolateral plasma membrane [GO:0016323]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; septate junction [GO:0005918]; sodium:potassium-exchanging ATPase complex [GO:0005890]	ATP binding [GO:0005524]; sodium:potassium-exchanging ATPase activity [GO:0005391]	GO:0001894; GO:0005391; GO:0005524; GO:0005634; GO:0005737; GO:0005886; GO:0005890; GO:0005918; GO:0006812; GO:0006883; GO:0007268; GO:0007605; GO:0007626; GO:0007630; GO:0008340; GO:0008344; GO:0009266; GO:0009612; GO:0015991; GO:0016323; GO:0019991; GO:0030007; GO:0035158; GO:0035159; GO:0036376; GO:0050905; GO:0051124; GO:0060439; GO:1990573	reviewed	Drosophila melanogaster (Fruit fly)	1	0	58	0	81	161	0	0	2	0	1	0	0	0	1
408	TRINITY_DN311730_c0_g1	6.13141101447842	6.2439433166619	14.6533320346412	0.000859924327287788	0.00769209766750203	O35604	TRINITY_DN311730_c0_g1_i1	3.5e-28	NPC intracellular cholesterol transporter 1 (Niemann-Pick C1 protein)	adult walking behavior [GO:0007628]; autophagy [GO:0006914]; bile acid metabolic process [GO:0008206]; cellular response to low-density lipoprotein particle stimulus [GO:0071404]; cellular response to steroid hormone stimulus [GO:0071383]; cholesterol efflux [GO:0033344]; cholesterol homeostasis [GO:0042632]; cholesterol metabolic process [GO:0008203]; cholesterol transport [GO:0030301]; endocytosis [GO:0006897]; establishment of protein localization to membrane [GO:0090150]; intracellular cholesterol transport [GO:0032367]; lysosomal transport [GO:0007041]; membrane raft organization [GO:0031579]; negative regulation of cell death [GO:0060548]; negative regulation of macroautophagy [GO:0016242]; protein glycosylation [GO:0006486]; response to cadmium ion [GO:0046686]; response to drug [GO:0042493]; viral entry into host cell [GO:0046718]	endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; integral component of lysosomal membrane [GO:1905103]; integral component of plasma membrane [GO:0005887]; late endosome membrane [GO:0031902]; lysosome [GO:0005764]; membrane [GO:0016020]; membrane raft [GO:0045121]; nuclear envelope [GO:0005635]; perinuclear region of cytoplasm [GO:0048471]; plasma membrane [GO:0005886]; vesicle [GO:0031982]	cholesterol binding [GO:0015485]; lipid transporter activity [GO:0005319]	GO:0005319; GO:0005576; GO:0005635; GO:0005764; GO:0005768; GO:0005783; GO:0005794; GO:0005886; GO:0005887; GO:0006486; GO:0006897; GO:0006914; GO:0007041; GO:0007628; GO:0008203; GO:0008206; GO:0015485; GO:0016020; GO:0016242; GO:0030301; GO:0031579; GO:0031902; GO:0031982; GO:0032367; GO:0033344; GO:0042493; GO:0042632; GO:0045121; GO:0046686; GO:0046718; GO:0048471; GO:0060548; GO:0071383; GO:0071404; GO:0090150; GO:1905103	reviewed	Mus musculus (Mouse)	7	126	57	94	330	47	85	57	5	39	7	2	42	4	2
409	TRINITY_DN311738_c1_g1	10.858668308854	5.17230645207359	17.4412497700449	0.000361990329064113	0.00369755798169449	O76856	TRINITY_DN311738_c1_g1_i4	4.7e-57	Cathepsin D (EC 3.4.23.5) (Ddp44)	programmed cell death [GO:0012501]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508]	early endosome [GO:0005769]; early phagosome [GO:0032009]; extracellular region [GO:0005576]; lysosome [GO:0005764]; phagocytic vesicle [GO:0045335]	aspartic-type endopeptidase activity [GO:0004190]	GO:0004190; GO:0005576; GO:0005764; GO:0005769; GO:0006508; GO:0012501; GO:0030163; GO:0032009; GO:0045335	reviewed	Dictyostelium discoideum (Slime mold)	19	6	144	0	2	70	3	0	0	2	1	6	4	1	2
410	TRINITY_DN311742_c0_g1	18.1635415619311	7.36308066356959	124.90464385355	8.86599145821003e-11	3.01541138056704e-09	Q9FN03	TRINITY_DN311742_c0_g1_i1	7e-39	Ultraviolet-B receptor UVR8 (Protein UV-B RESISTANCE 8) (RCC1 domain-containing protein UVR8)	entrainment of circadian clock [GO:0009649]; protein-chromophore linkage [GO:0018298]; response to UV [GO:0009411]; response to UV-B [GO:0010224]	chromatin [GO:0000785]; cytosol [GO:0005829]; nucleus [GO:0005634]	chromatin binding [GO:0003682]; guanyl-nucleotide exchange factor activity [GO:0005085]; identical protein binding [GO:0042802]; photoreceptor activity [GO:0009881]; protein homodimerization activity [GO:0042803]	GO:0000785; GO:0003682; GO:0005085; GO:0005634; GO:0005829; GO:0009411; GO:0009649; GO:0009881; GO:0010224; GO:0018298; GO:0042802; GO:0042803	reviewed	Arabidopsis thaliana (Mouse-ear cress)	348	519	299	130	149	155	106	3	0	0	2	0	0	1	0
411	TRINITY_DN311743_c1_g1	-4.32799041961514	8.04581311968933	19.1653656600869	0.000218950362955341	0.00240516165340554	Q9LKA5	TRINITY_DN311743_c1_g1_i2	2.3e-20	Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial (RNA editing-interacting protein 1)	cytidine to uridine editing [GO:0016554]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397]; RNA modification [GO:0009451]	chloroplast [GO:0009507]; mitochondrion [GO:0005739]	cobalt ion binding [GO:0050897]; protein dimerization activity [GO:0046983]; protein homodimerization activity [GO:0042803]	GO:0005739; GO:0006397; GO:0009451; GO:0009507; GO:0016554; GO:0042803; GO:0046983; GO:0050897; GO:0080156	reviewed	Arabidopsis thaliana (Mouse-ear cress)	230	131	86	11	9	21	40	868	617	443	322	370	305	569	242
412	TRINITY_DN311745_c0_g3	-3.56498082197027	9.3127448479832	18.75614937104	0.000246193839064072	0.00260057997236622	Q67VP4	TRINITY_DN311745_c0_g3_i1	9.4e-94	Rac-like GTP-binding protein 4 (GTPase protein ROP4) (OsRac4)	actin cytoskeleton organization [GO:0030036]; actin filament organization [GO:0007015]; cell migration [GO:0016477]; cell morphogenesis [GO:0000902]; positive regulation of actin filament polymerization [GO:0030838]; Rho protein signal transduction [GO:0007266]	cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; protein kinase binding [GO:0019901]	GO:0000902; GO:0003924; GO:0005525; GO:0005634; GO:0005737; GO:0005886; GO:0007015; GO:0007266; GO:0016477; GO:0019901; GO:0030036; GO:0030838	reviewed	Oryza sativa subsp. japonica (Rice)	322	161	247	227	46	60	157	1721	1215	1109	938	992	788	1090	814
413	TRINITY_DN311752_c0_g1	-2.3985059331349	10.8408513007627	10.1836540262016	0.00405867082591305	0.027367290209588	Q0DV32	TRINITY_DN311752_c0_g1_i1	1.1e-123	4-coumarate--CoA ligase-like 1 (EC 6.2.1.-)	jasmonic acid biosynthetic process [GO:0009695]	peroxisome [GO:0005777]	ATP binding [GO:0005524]; fatty-acyl-CoA synthase activity [GO:0004321]; ligase activity [GO:0016874]	GO:0004321; GO:0005524; GO:0005777; GO:0009695; GO:0016874	reviewed	Oryza sativa subsp. japonica (Rice)	886	1191	692	518	355	283	928	4274	2115	1594	1200	4247	3069	4592	1357
414	TRINITY_DN311753_c2_g3	19.924853200714	7.54027078263658	166.016255396436	5.17071179499917e-12	2.07835753318473e-10	Q1PFN9	TRINITY_DN311753_c2_g3_i1	3.2e-06	Pumilio homolog 9 (APUM-9) (AtPUM9)	negative regulation of seed dormancy process [GO:1902039]; regulation of translation [GO:0006417]	cytoplasm [GO:0005737]	RNA binding [GO:0003723]	GO:0003723; GO:0005737; GO:0006417; GO:1902039	reviewed	Arabidopsis thaliana (Mouse-ear cress)	211	158	123	236	389	337	239	0	0	1	0	0	0	1	0
415	TRINITY_DN311753_c2_g8	20.7944184311432	8.61104561003733	231.475963927308	1.65793983557206e-13	1.14029417579901e-11	P48758	TRINITY_DN311753_c2_g8_i1	1.3e-18	Carbonyl reductase [NADPH] 1 (EC 1.1.1.184) (15-hydroxyprostaglandin dehydrogenase [NADP(+)]) (EC 1.1.1.197) (NADPH-dependent carbonyl reductase 1) (Prostaglandin 9-ketoreductase) (Prostaglandin-E(2) 9-reductase) (EC 1.1.1.189)	drug metabolic process [GO:0017144]; oxidation-reduction process [GO:0055114]; vitamin K metabolic process [GO:0042373]	cytoplasm [GO:0005737]; intracellular membrane-bounded organelle [GO:0043231]; microvillus [GO:0005902]; nucleus [GO:0005634]; plasma membrane [GO:0005886]	15-hydroxyprostaglandin dehydrogenase (NADP+) activity [GO:0047021]; carbonyl reductase (NADPH) activity [GO:0004090]; oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [GO:0016655]; prostaglandin-E2 9-reductase activity [GO:0050221]	GO:0004090; GO:0005634; GO:0005737; GO:0005886; GO:0005902; GO:0016655; GO:0017144; GO:0042373; GO:0043231; GO:0047021; GO:0050221; GO:0055114	reviewed	Mus musculus (Mouse)	766	771	1249	150	249	293	241	1	0	0	1	0	0	1	1
416	TRINITY_DN311774_c0_g1	23.0314020762896	8.16950450288644	247.287786907679	9.77218021580518e-13	4.95817996195361e-11	O81117	TRINITY_DN311774_c0_g1_i2	7.3e-34	Cytochrome P450 94A1 (EC 1.14.-.-) (P450-dependent fatty acid omega-hydroxylase)		endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]	heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]	GO:0004497; GO:0005506; GO:0005789; GO:0016021; GO:0016705; GO:0020037	reviewed	Vicia sativa (Spring vetch) (Tare)	568	537	247	378	436	380	291	0	0	0	1	0	0	0	0
417	TRINITY_DN311783_c0_g2	21.6630384437546	9.69691739341026	384.378169526921	7.23158531044022e-16	6.09261404805346e-13	Q43531	TRINITY_DN311783_c0_g2_i2	2.9e-49	Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase (LlCCaMK) (EC 2.7.11.17)		integral component of membrane [GO:0016021]	ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]	GO:0004683; GO:0005509; GO:0005516; GO:0005524; GO:0016021	reviewed	Lilium longiflorum (Trumpet lily)	1324	1994	627	1254	1683	1116	620	2	0	2	3	0	1	1	0
418	TRINITY_DN311784_c3_g3	-3.11739281112209	9.041847143974	13.2897290695942	0.00134833388941519	0.0111345269361167	Q9LJU6	TRINITY_DN311784_c3_g3_i1	1.9e-28	Protein FATTY ACID EXPORT 6 (At-FAX6)		cytoplasm [GO:0005737]; endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]		GO:0005634; GO:0005737; GO:0012505; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)	322	214	275	106	25	113	103	1016	925	994	1035	573	520	1202	625
419	TRINITY_DN311788_c0_g1	-11.3163646919577	5.72973375738932	31.2266579156462	1.09265647003853e-05	0.00016658974259947	B6IPI0	TRINITY_DN311788_c0_g1_i9	7e-42	tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I)	tRNA pseudouridine synthesis [GO:0031119]		RNA binding [GO:0003723]; tRNA pseudouridine synthase activity [GO:0106029]	GO:0003723; GO:0031119; GO:0106029	reviewed	Rhodospirillum centenum (strain ATCC 51521 / SW)	1	5	0	0	1	2	0	214	173	171	113	71	22	50	79
420	TRINITY_DN311789_c4_g1	11.8068173391198	3.1874911206042	15.3675297932124	0.000845802266978572	0.00760976167528687	P04106	TRINITY_DN311789_c4_g1_i1	2.8e-20	Tubulin alpha chain	microtubule-based process [GO:0007017]	cytoplasm [GO:0005737]; microtubule [GO:0005874]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; structural constituent of cytoskeleton [GO:0005200]	GO:0003924; GO:0005200; GO:0005525; GO:0005737; GO:0005874; GO:0007017	reviewed	Trypanosoma brucei rhodesiense	2	1	39	0	0	11	1	0	0	0	0	1	0	0	0
421	TRINITY_DN311790_c1_g3	6.65379899443367	1.62746375237452	8.61527003508784	0.00817507310876113	0.0476494374230051	Q05022	TRINITY_DN311790_c1_g3_i1	4.1e-22	rRNA biogenesis protein RRP5 (Ribosomal RNA-processing protein 5) (U3 small nucleolar RNA-associated protein RRP5) (U3 snoRNA-associated protein RRP5)	90S preribosome assembly [GO:0034463]; endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000480]; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000447]; endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000464]; endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000472]; maturation of SSU-rRNA [GO:0030490]; rRNA methylation [GO:0031167]; rRNA processing [GO:0006364]	90S preribosome [GO:0030686]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; small-subunit processome [GO:0032040]	box C/D snoRNA binding [GO:0034512]; box H/ACA snoRNA binding [GO:0034513]; mRNA binding [GO:0003729]; poly(U) RNA binding [GO:0008266]; rRNA primary transcript binding [GO:0042134]; snoRNA binding [GO:0030515]; U3 snoRNA binding [GO:0034511]	GO:0000447; GO:0000464; GO:0000472; GO:0000480; GO:0003729; GO:0005654; GO:0005730; GO:0006364; GO:0008266; GO:0030490; GO:0030515; GO:0030686; GO:0031167; GO:0032040; GO:0034463; GO:0034511; GO:0034512; GO:0034513; GO:0042134	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	0	6	0	2	6	0	0	0	0	0	0	0	1	0	0
422	TRINITY_DN311791_c1_g2	6.06714021625193	4.53779979657357	9.59182785204433	0.00507740990690222	0.0322653009809359	Q5G1T1	TRINITY_DN311791_c1_g2_i2	9e-14	Pentatricopeptide repeat-containing protein At3g49170, chloroplastic (Protein EMBRYO DEFECTIVE 2261)	embryo development ending in seed dormancy [GO:0009793]; RNA modification [GO:0009451]	chloroplast [GO:0009507]	zinc ion binding [GO:0008270]	GO:0008270; GO:0009451; GO:0009507; GO:0009793	reviewed	Arabidopsis thaliana (Mouse-ear cress)	15	0	1	51	36	22	34	1	1	0	0	6	33	12	11
423	TRINITY_DN311791_c2_g1	-5.55727875541323	5.68263423488565	10.6509560096954	0.00341245575197575	0.02378727601884	F4JXF9	TRINITY_DN311791_c2_g1_i1	7.4e-13	DNA-directed RNA polymerase III subunit 1 (DNA-directed RNA polymerase III subunit RPC1) (DNA polymerase I subunit C1) (EC 2.7.7.6) (Nuclear RNA polymerase C1)	transcription by RNA polymerase III [GO:0006383]	RNA polymerase III complex [GO:0005666]	DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; metal ion binding [GO:0046872]	GO:0003677; GO:0003899; GO:0005666; GO:0006383; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)	17	68	17	0	0	1	5	194	113	151	104	25	81	52	46
424	TRINITY_DN311792_c1_g1	-6.55814009384528	7.32058541665805	32.6022074689073	8.12508054730347e-06	0.000128301654560736	P21238	TRINITY_DN311792_c1_g1_i5	7.7e-164	Chaperonin 60 subunit alpha 1, chloroplastic (CPN-60 alpha 1) (Protein SCHLEPPERLESS) (RuBisCO large subunit-binding protein subunit alpha 1)	'de novo' protein folding [GO:0006458]; chloroplast organization [GO:0009658]; embryo development ending in seed dormancy [GO:0009793]; mitochondrion organization [GO:0007005]; protein folding [GO:0006457]; protein refolding [GO:0042026]	apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; mitochondrion [GO:0005739]; thylakoid [GO:0009579]	ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]	GO:0005524; GO:0005739; GO:0005829; GO:0006457; GO:0006458; GO:0007005; GO:0009507; GO:0009570; GO:0009579; GO:0009658; GO:0009793; GO:0009941; GO:0016020; GO:0022626; GO:0042026; GO:0048046; GO:0051082	reviewed	Arabidopsis thaliana (Mouse-ear cress)	40	16	26	14	4	8	15	586	430	400	298	213	139	290	206
425	TRINITY_DN311798_c0_g2	1.83348694328055	9.76799060418858	8.54812090144466	0.00763157273259362	0.045248501163558	P53118	TRINITY_DN311798_c0_g2_i4	3.9e-14	Putative lipase ROG1 (EC 3.1.-.-) (Revertant of glycogen synthase kinase mutation protein 1)	cellular lipid metabolic process [GO:0044255]; lipid catabolic process [GO:0016042]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	acylglycerol lipase activity [GO:0047372]	GO:0005634; GO:0005737; GO:0016042; GO:0044255; GO:0047372	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	919	1037	530	707	789	318	845	1124	821	1890	1705	260	402	271	237
426	TRINITY_DN311986_c0_g1	4.4813559339046	12.8698866820092	31.613625120987	1.00449800353051e-05	0.000154672702533678	Q94B60	TRINITY_DN311986_c0_g1_i4	1.8e-12	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic (EC 3.4.21.92) (Endopeptidase ClpP4) (nClpP4) (nClpP3)	chloroplast organization [GO:0009658]; protein quality control for misfolded or incompletely synthesized proteins [GO:0006515]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]	chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplastic endopeptidase Clp complex [GO:0009840]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; endopeptidase Clp complex [GO:0009368]; plastid stroma [GO:0009532]; thylakoid [GO:0009579]	ATPase binding [GO:0051117]; ATP-dependent peptidase activity [GO:0004176]; serine-type endopeptidase activity [GO:0004252]	GO:0004176; GO:0004252; GO:0006515; GO:0009368; GO:0009507; GO:0009532; GO:0009535; GO:0009570; GO:0009579; GO:0009658; GO:0009840; GO:0009941; GO:0048510; GO:0051117	reviewed	Arabidopsis thaliana (Mouse-ear cress)	7794	3891	11803	7259	10241	4223	10628	5355	2900	4128	3613	2192	3555	3091	1150
427	TRINITY_DN311987_c0_g1	22.4837887770859	9.73364550273535	292.330957556357	1.39172814571675e-14	2.05114219571111e-12	O80800	TRINITY_DN311987_c0_g1_i1	1.7e-20	Acyl carrier protein 2, mitochondrial (MtACP-2) (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit)	oxidation-reduction process [GO:0055114]	mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; respirasome [GO:0070469]	acyl binding [GO:0000035]; acyl carrier activity [GO:0000036]; cobalt ion binding [GO:0050897]; metal ion binding [GO:0046872]	GO:0000035; GO:0000036; GO:0005739; GO:0005759; GO:0046872; GO:0050897; GO:0055114; GO:0070469	reviewed	Arabidopsis thaliana (Mouse-ear cress)	1540	1350	1751	825	1169	949	584	1	0	1	5	0	1	0	0
428	TRINITY_DN311987_c0_g6	21.189580668832	7.31138618772064	161.598904321492	4.77207532073843e-11	1.65950259749275e-09	P29509	TRINITY_DN311987_c0_g6_i1	2.2e-111	Thioredoxin reductase 1 (EC 1.8.1.9)	cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; removal of superoxide radicals [GO:0019430]	cytosol [GO:0005829]; mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]	ferrous iron binding [GO:0008198]; thioredoxin-disulfide reductase activity [GO:0004791]	GO:0004791; GO:0005739; GO:0005758; GO:0005829; GO:0008198; GO:0019430; GO:0034599; GO:0045454	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	239	308	299	162	207	207	101	0	0	0	0	0	0	1	0
429	TRINITY_DN312001_c0_g1	-7.63686262524981	9.20885940679368	67.5990282295493	2.64625040264951e-08	6.7132336034428e-07	F4JHA2	TRINITY_DN312001_c0_g1_i3	1.6e-07	Putative GTP diphosphokinase RSH1, chloroplastic (EC 2.7.6.5) (RelA/SpoT homolog 1) (AtRSH1) (ppGpp synthetase RSH1)	guanosine tetraphosphate metabolic process [GO:0015969]; leaf senescence [GO:0010150]; photosynthesis [GO:0015979]; response to wounding [GO:0009611]	chloroplast [GO:0009507]	ATP binding [GO:0005524]; GTP binding [GO:0005525]; GTP diphosphokinase activity [GO:0008728]; guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity [GO:0008893]; kinase activity [GO:0016301]	GO:0005524; GO:0005525; GO:0008728; GO:0008893; GO:0009507; GO:0009611; GO:0010150; GO:0015969; GO:0015979; GO:0016301	reviewed	Arabidopsis thaliana (Mouse-ear cress)	127	101	25	14	16	34	42	2662	1672	1465	882	804	626	1170	735
430	TRINITY_DN312003_c1_g6	20.4429193732125	6.2032394462178	108.073514181673	8.57600968519413e-09	2.24938559115897e-07	Q5FVC7	TRINITY_DN312003_c1_g6_i1	1.1e-17	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 (Centaurin-beta-2) (Cnt-b2)	cellular response to nerve growth factor stimulus [GO:1990090]; endocytic recycling [GO:0032456]	endosome membrane [GO:0010008]	GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]	GO:0005096; GO:0010008; GO:0032456; GO:0046872; GO:1990090	reviewed	Rattus norvegicus (Rat)	145	214	84	67	109	82	59	0	0	0	0	0	0	0	0
431	TRINITY_DN312005_c0_g4	21.9797668385087	9.74791811224948	298.264973623319	1.12210426127216e-14	1.90575791791826e-12	Q4PBY6	TRINITY_DN312005_c0_g4_i1	3.9e-36	Cytochrome c peroxidase, mitochondrial (CCP) (EC 1.11.1.5)	cellular response to oxidative stress [GO:0034599]; hydrogen peroxide catabolic process [GO:0042744]; response to reactive oxygen species [GO:0000302]	chloroplast [GO:0009507]; mitochondrial intermembrane space [GO:0005758]; mitochondrial matrix [GO:0005759]	cytochrome-c peroxidase activity [GO:0004130]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]	GO:0000302; GO:0004130; GO:0004601; GO:0005758; GO:0005759; GO:0009507; GO:0020037; GO:0034599; GO:0042744; GO:0046872	reviewed	Ustilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)	1337	1969	777	1436	1100	1389	513	0	0	2	2	0	0	2	1
432	TRINITY_DN312007_c1_g4	9.71959405757797	1.91057342003359	19.5857681158931	0.000368764630892525	0.00371767600199468	Q29PG5	TRINITY_DN312007_c1_g4_i1	5.4e-26	Adenylyltransferase and sulfurtransferase MOCS3-2 (Molybdenum cofactor synthesis protein 3-2) [Includes: Molybdopterin-synthase adenylyltransferase 2 (EC 2.7.7.80) (Adenylyltransferase MOCS3-2) (Sulfur carrier protein MOCS2A adenylyltransferase 2); Molybdopterin-synthase sulfurtransferase 2 (EC 2.8.1.11) (Sulfur carrier protein MOCS2A sulfurtransferase 2) (Sulfurtransferase MOCS3-2)]	enzyme active site formation via cysteine modification to L-cysteine persulfide [GO:0018192]; Mo-molybdopterin cofactor biosynthetic process [GO:0006777]; tRNA wobble position uridine thiolation [GO:0002143]	cytosol [GO:0005829]	ATP binding [GO:0005524]; metal ion binding [GO:0046872]; molybdopterin-synthase adenylyltransferase activity [GO:0061605]; molybdopterin-synthase sulfurtransferase activity [GO:0061604]; thiosulfate sulfurtransferase activity [GO:0004792]; ubiquitin-like modifier activating enzyme activity [GO:0008641]	GO:0002143; GO:0004792; GO:0005524; GO:0005829; GO:0006777; GO:0008641; GO:0018192; GO:0046872; GO:0061604; GO:0061605	reviewed	Drosophila pseudoobscura pseudoobscura (Fruit fly)	2	6	1	1	6	2	2	0	0	0	0	0	0	0	0
433	TRINITY_DN312065_c5_g1	-4.43847117089738	10.1409689790392	27.8421215919052	2.34512045265591e-05	0.000325477479864128	Q9XGM8	TRINITY_DN312065_c5_g1_i2	2.9e-31	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (EC 2.4.1.101) (N-acetylglucosaminyltransferase I) (GlcNAcT-I) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I) (Protein COMPLEX GLYCAN LESS 1)	hyperosmotic response [GO:0006972]; N-glycan processing [GO:0006491]; protein glycosylation [GO:0006486]	endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]	acetylglucosaminyltransferase activity [GO:0008375]; alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity [GO:0003827]; metal ion binding [GO:0046872]; protein N-acetylglucosaminyltransferase activity [GO:0016262]; transferase activity, transferring glycosyl groups [GO:0016757]	GO:0000139; GO:0003827; GO:0005768; GO:0005794; GO:0005802; GO:0006486; GO:0006491; GO:0006972; GO:0008375; GO:0016021; GO:0016262; GO:0016757; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)	419	143	293	269	60	132	287	2869	2534	2355	1547	1510	1901	2295	1519
434	TRINITY_DN312090_c4_g1	22.7068357769775	11.0398805156114	325.433180859928	4.39412812006147e-15	1.18268473397764e-12	P39692	TRINITY_DN312090_c4_g1_i5	1.4e-89	Sulfite reductase [NADPH] flavoprotein component (EC 1.8.1.2)	cysteine biosynthetic process [GO:0019344]; hydrogen sulfide biosynthetic process [GO:0070814]; methionine biosynthetic process [GO:0009086]; sulfate assimilation [GO:0000103]	cytosol [GO:0005829]; sulfite reductase complex (NADPH) [GO:0009337]	flavin adenine dinucleotide binding [GO:0050660]; FMN binding [GO:0010181]; NADPH-hemoprotein reductase activity [GO:0003958]; oxidoreductase activity [GO:0016491]; sulfite reductase (NADPH) activity [GO:0004783]	GO:0000103; GO:0003958; GO:0004783; GO:0005829; GO:0009086; GO:0009337; GO:0010181; GO:0016491; GO:0019344; GO:0050660; GO:0070814	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	3459	4336	3107	2496	3332	2783	1394	4	0	3	4	0	0	4	1
435	TRINITY_DN312093_c0_g7	22.1153091454244	10.9939885012046	502.879671150501	3.79900168517306e-17	1.17579102156106e-13	Q8GYX0	TRINITY_DN312093_c0_g7_i1	9.9e-17	MOB kinase activator-like 1B (Mob1 homolog 1B) (Mps one binder kinase activator-like 1B)			metal ion binding [GO:0046872]	GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)	3664	3962	2378	2683	3052	2721	1694	2	1	2	2	2	1	6	2
436	TRINITY_DN312095_c1_g3	-10.4089716042812	2.37358316261628	8.77688885747358	0.0083246258514646	0.0484299191922612	P37367	TRINITY_DN312095_c1_g3_i1	9.1e-28	Cation-transporting ATPase pma1 (EC 3.6.3.-)		integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	ATPase-coupled calcium transmembrane transporter activity [GO:0005388]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]	GO:0005388; GO:0005524; GO:0005886; GO:0016021; GO:0016787	reviewed	Synechocystis sp. (strain PCC 6803 / Kazusa)	0	0	0	0	0	0	0	0	0	14	0	1	18	0	17.3
437	TRINITY_DN312702_c0_g1	15.0615267188458	4.17744952861556	18.1054532194065	0.00053225461768484	0.00507183898082019	A6ZWD3	TRINITY_DN312702_c0_g1_i2	4.9e-26	ATP-dependent RNA helicase DBP1 (EC 3.6.4.13) (DEAD box protein 1) (Helicase CA1)		cytoplasm [GO:0005737]	ATP binding [GO:0005524]; helicase activity [GO:0004386]; translation initiation factor activity [GO:0003743]	GO:0003743; GO:0004386; GO:0005524; GO:0005737	reviewed	Saccharomyces cerevisiae (strain YJM789) (Baker's yeast)	0	0	17	0	72	53	0	0	0	0	0	0	0	0	0
438	TRINITY_DN312705_c0_g2	3.1035420076782	11.7934955274418	19.7754878434522	0.000184245977407263	0.00209647536792456	Q5H7P5	TRINITY_DN312705_c0_g2_i2	9.4e-80	Mannosylglycoprotein endo-beta-mannosidase (Endo-beta-mannosidase) (EC 3.2.1.152) [Cleaved into: Mannosylglycoprotein endo-beta-mannosidase 31 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 28 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 42 kDa subunit]	carbohydrate metabolic process [GO:0005975]		mannosylglycoprotein endo-beta-mannosidase activity [GO:0033947]	GO:0005975; GO:0033947	reviewed	Lilium longiflorum (Trumpet lily)	5270.36	7060.91	2580.16	2860.42	1510.16	2124.44	4591.76	3350.32	2846.15	2359.59	1651.46	1416.61	1490.38	3062.25	1438.91
439	TRINITY_DN312705_c0_g3	-8.10269296959081	1.68906627087006	8.70987540768425	0.00853183685584727	0.0491732496626579	F4I9Q5	TRINITY_DN312705_c0_g3_i1	1.2e-07	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (EC 3.6.4.13)		chloroplast [GO:0009507]	ATP binding [GO:0005524]; ATP-dependent 3'-5' RNA helicase activity [GO:0034459]; RNA binding [GO:0003723]	GO:0003723; GO:0005524; GO:0009507; GO:0034459	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	0	0	0	0	0	0	3	1	6	1	1	6	0
440	TRINITY_DN312707_c1_g1	22.9903798617626	10.3558664092433	292.752734478934	1.37040543578849e-14	2.05114219571111e-12	Q9C5X9	TRINITY_DN312707_c1_g1_i1	3.4e-38	Histone acetyltransferase HAC1 (EC 2.3.1.48)	regulation of transcription, DNA-templated [GO:0006355]	nucleus [GO:0005634]	histone acetyltransferase activity [GO:0004402]; transcription coregulator activity [GO:0003712]; zinc ion binding [GO:0008270]	GO:0003712; GO:0004402; GO:0005634; GO:0006355; GO:0008270	reviewed	Arabidopsis thaliana (Mouse-ear cress)	2174	3003	1713	1582	2272	1602	996	0	0	2	5	0	0	2	0
441	TRINITY_DN312713_c2_g1	3.87749701807214	11.0584889306794	26.6976352157612	3.0732574420452e-05	0.000417181218558328	Q7XP59	TRINITY_DN312713_c2_g1_i1	2.9e-256	Glutamate receptor 3.1 (Ligand-gated ion channel 3.1)		integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	ionotropic glutamate receptor activity [GO:0004970]	GO:0004970; GO:0005886; GO:0016021	reviewed	Oryza sativa subsp. japonica (Rice)	2208	1951	1505	2085	1335	1367	4842	1497	1858	1043	924	509	1041	514	859
442	TRINITY_DN312716_c1_g1	7.59859076629933	5.60743073366748	19.0088680092133	0.00022896007899756	0.00246341994537583	O48649	TRINITY_DN312716_c1_g1_i6	9.4e-52	ADP-ribosylation factor 1	protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192]	Golgi apparatus [GO:0005794]	GTP binding [GO:0005525]	GO:0005525; GO:0005794; GO:0015031; GO:0016192	reviewed	Salix bakko (Japanese willow)	5	191	9	21	306	24	29	43	5	7	12	2	3	4	2
443	TRINITY_DN312717_c0_g3	6.09146485937751	3.41111821254425	9.68496155911226	0.00489997782716926	0.0316488366810034	Q6CPQ9	TRINITY_DN312717_c0_g3_i1	1e-123	Elongation factor 2 (EF-2)		cytoplasm [GO:0005737]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; translation elongation factor activity [GO:0003746]	GO:0003746; GO:0003924; GO:0005525; GO:0005737	reviewed	Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast) (Candida sphaerica)	3	41	8	2	7	7	15	1	1	1	0	6	2	1	9
444	TRINITY_DN312719_c0_g1	6.16469469028649	12.5536912887159	57.6566629743812	1.02832872656462e-07	2.22564853756468e-06	F4IBB2	TRINITY_DN312719_c0_g1_i5	5e-11	Phosphoglycerate mutase-like protein 2		chloroplast [GO:0009507]		GO:0009507	reviewed	Arabidopsis thaliana (Mouse-ear cress)	6280	3618	6576	6541	4791	6149	12775	1892	1304	1187	1121	1343	1230	1998	1380
445	TRINITY_DN312725_c0_g2	19.8658599443598	8.43248830217446	237.382654109389	1.27167590088497e-13	9.14744634541312e-12	Q7S4N5	TRINITY_DN312725_c0_g2_i1	3.9e-43	Metacaspase-1B (EC 3.4.22.-)	apoptotic process [GO:0006915]		cysteine-type peptidase activity [GO:0008234]	GO:0006915; GO:0008234	reviewed	Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)	710	903	456	409	416	440	181	1	0	1	2	1	0	1	0
446	TRINITY_DN312726_c1_g1	13.8510284852434	3.5757207534013	35.3954225471053	1.57231874258832e-05	0.000229543703222211	Q9ZV48	TRINITY_DN312726_c1_g1_i1	2.2e-14	Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 11) (AtTPS11)	dephosphorylation [GO:0016311]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; mitochondrion [GO:0005739]	transferase activity, transferring glycosyl groups [GO:0016757]	GO:0005737; GO:0005739; GO:0005829; GO:0016311; GO:0016757	reviewed	Arabidopsis thaliana (Mouse-ear cress)	6	11	3	22	21	21	10	0	0	0	0	0	0	0	0
447	TRINITY_DN312726_c1_g3	21.9171654698579	12.2725523829399	406.652485933661	3.91195547627601e-16	6.05375109953713e-13	O80738	TRINITY_DN312726_c1_g3_i1	2.2e-11	Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 10) (AtTPS10)	dephosphorylation [GO:0016311]	cytoplasm [GO:0005737]; cytosol [GO:0005829]	transferase activity, transferring glycosyl groups [GO:0016757]	GO:0005737; GO:0005829; GO:0016311; GO:0016757	reviewed	Arabidopsis thaliana (Mouse-ear cress)	4480.56	3101.43	1858.16	9196.19	10953.98	9513.96	5994	5	1	3	4	4	4	13	4
448	TRINITY_DN312728_c0_g1	-10.8553250995081	3.56840967179775	18.8076988963564	0.000319118047335184	0.00332188481093649	Q8BW41	TRINITY_DN312728_c0_g1_i2	1.5e-07	Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 (POMGnT2) (EC 2.4.1.312) (Extracellular O-linked N-acetylglucosamine transferase-like) (Glycosyltransferase-like domain-containing protein 2)	neuron migration [GO:0001764]; protein O-linked glycosylation [GO:0006493]; protein O-linked mannosylation [GO:0035269]	endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]	acetylglucosaminyltransferase activity [GO:0008375]; protein O-GlcNAc transferase activity [GO:0097363]	GO:0001764; GO:0005783; GO:0005789; GO:0006493; GO:0008375; GO:0016021; GO:0035269; GO:0097363	reviewed	Mus musculus (Mouse)	1	0	1	0	0	0	0	13	13	20	14	46	14	15	9
449	TRINITY_DN312737_c2_g3	13.5519528714353	3.39010961049009	28.332338669718	5.5742182253755e-05	0.000727941156436168	Q3UX83	TRINITY_DN312737_c2_g3_i1	3.6e-47	Probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 (ACC synthase-like protein 2)	biosynthetic process [GO:0009058]		catalytic activity [GO:0003824]; pyridoxal phosphate binding [GO:0030170]	GO:0003824; GO:0009058; GO:0030170	reviewed	Mus musculus (Mouse)	28	17	27	4	8	3	0	0	0	0	0	0	0	0	0
450	TRINITY_DN312737_c2_g4	21.9015275620774	12.5515953493913	262.930249176002	4.31140490432026e-14	3.92464652319742e-12	Q39613	TRINITY_DN312737_c2_g4_i2	8.1e-71	Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) (Cyclophilin) (Cyp) (Cyclosporin A-binding protein) (Rotamase) (allergen Cat r 1)	protein folding [GO:0006457]; protein peptidyl-prolyl isomerization [GO:0000413]; regulation of protein refolding [GO:0061083]	cytoplasm [GO:0005737]	peptidyl-prolyl cis-trans isomerase activity [GO:0003755]	GO:0000413; GO:0003755; GO:0005737; GO:0006457; GO:0061083	reviewed	Catharanthus roseus (Madagascar periwinkle) (Vinca rosea)	9934	9707	8238	7949	8463	8580	4649	5	4	8	14	3	1	21	2
451	TRINITY_DN312737_c2_g5	10.4689059580857	2.13219823870807	15.7416790180158	0.000991516963327211	0.00869980065277489	F4JIU4	TRINITY_DN312737_c2_g5_i1	1.6e-19	Myosin-4 (MYOSIN VIII B) (AtVIIIB)	actin filament-based movement [GO:0030048]	myosin complex [GO:0016459]	actin filament binding [GO:0051015]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]	GO:0003774; GO:0005516; GO:0005524; GO:0016459; GO:0030048; GO:0051015	reviewed	Arabidopsis thaliana (Mouse-ear cress)	5	4	8	0	1	4	0	0	0	0	0	0	0	0	0
452	TRINITY_DN312738_c3_g1	-3.07278480243448	8.55436389435478	15.6021135592669	0.00063562352501676	0.00596137821189962	Q9SEE9	TRINITY_DN312738_c3_g1_i1	4.4e-29	Serine/arginine-rich splicing factor SR45 (At-SR45) (AtSR45) (Serine/arginine-rich ribonucleoprotein 1)	mRNA splicing, via spliceosome [GO:0000398]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; RNA splicing [GO:0008380]; sugar mediated signaling pathway [GO:0010182]	ASAP complex [GO:0061574]; cytoplasm [GO:0005737]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; spliceosomal complex [GO:0005681]	RNA binding [GO:0003723]	GO:0000381; GO:0000398; GO:0003723; GO:0005654; GO:0005681; GO:0005730; GO:0005737; GO:0008380; GO:0010182; GO:0016607; GO:0061574	reviewed	Arabidopsis thaliana (Mouse-ear cress)	187	164	207	71	63	73	77	959	829	919	492	210	418	823	510
453	TRINITY_DN312740_c0_g1	-2.80051652204744	8.14774346386331	11.3776617548817	0.00262057915530978	0.0195438373149006	Q9FGL9	TRINITY_DN312740_c0_g1_i1	4.2e-54	Polypyrimidine tract-binding protein homolog 2	mRNA processing [GO:0006397]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; regulation of RNA splicing [GO:0043484]; regulation of translation [GO:0006417]; RNA splicing [GO:0008380]; seed germination [GO:0009845]	cytoplasm [GO:0005737]; nucleus [GO:0005634]; P-body [GO:0000932]	mRNA binding [GO:0003729]; RNA binding [GO:0003723]	GO:0000381; GO:0000932; GO:0003723; GO:0003729; GO:0005634; GO:0005737; GO:0006397; GO:0006417; GO:0008380; GO:0009845; GO:0043484	reviewed	Arabidopsis thaliana (Mouse-ear cress)	138	178	112	91	25	53	94	510	448	515	283	308	482	619	474
454	TRINITY_DN312741_c6_g2	13.2112699809252	3.08500463609502	30.9906095656613	3.38461523820652e-05	0.000455451485315181	P0DM41	TRINITY_DN312741_c6_g2_i1	1.4e-25	Actin-1	actin cytoskeleton organization [GO:0030036]; cortical actin cytoskeleton organization [GO:0030866]; embryo development ending in birth or egg hatching [GO:0009792]; mitotic cytokinesis [GO:0000281]	actin cytoskeleton [GO:0015629]; cytoplasm [GO:0005737]	ATP binding [GO:0005524]	GO:0000281; GO:0005524; GO:0005737; GO:0009792; GO:0015629; GO:0030036; GO:0030866	reviewed	Caenorhabditis elegans	10	32	17	5	9	2	2	0	0	0	0	0	0	0	0
455	TRINITY_DN312741_c6_g4	5.38929456884135	6.98923319753682	10.6570473430631	0.00340481563361694	0.02378727601884	P22131	TRINITY_DN312741_c6_g4_i1	8e-29	Actin-1		cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]	ATP binding [GO:0005524]	GO:0005524; GO:0005737; GO:0005856	reviewed	Phytophthora infestans (Potato late blight fungus) (Botrytis infestans)	90.56	198.97	92.61	151.1	234.33	187.33	76.7	77.12	13.04	10.96	0	155.64	8.96	9	16.58
456	TRINITY_DN312745_c1_g1	13.9095396903651	3.56437277819624	34.1777665074677	1.93018154705033e-05	0.000272781364754373	P22216	TRINITY_DN312745_c1_g1_i6	2.9e-19	Serine/threonine-protein kinase RAD53 (EC 2.7.12.1) (CHEK2 homolog) (Serine-protein kinase 1)	deoxyribonucleoside triphosphate biosynthetic process [GO:0009202]; DNA damage checkpoint [GO:0000077]; DNA repair [GO:0006281]; DNA replication initiation [GO:0006270]; mitotic DNA damage checkpoint [GO:0044773]; negative regulation of phosphorylation [GO:0042326]; protein localization [GO:0008104]; protein phosphorylation [GO:0006468]; signal transduction in response to DNA damage [GO:0042770]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]	ATP binding [GO:0005524]; DNA replication origin binding [GO:0003688]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; protein serine/threonine kinase activity [GO:0004674]; protein tyrosine kinase activity [GO:0004713]	GO:0000077; GO:0003688; GO:0004672; GO:0004674; GO:0004712; GO:0004713; GO:0005524; GO:0005634; GO:0005737; GO:0005829; GO:0006270; GO:0006281; GO:0006468; GO:0008104; GO:0009202; GO:0042326; GO:0042770; GO:0044773	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	24	38	31	1	7	4	3	0	0	0	0	0	0	0	0
457	TRINITY_DN312745_c1_g2	9.57811394153458	2.90650194348033	12.6562459111968	0.0024160853204034	0.0182909998002133	P22612	TRINITY_DN312745_c1_g2_i1	4.9e-22	cAMP-dependent protein kinase catalytic subunit gamma (PKA C-gamma) (EC 2.7.11.11)	activation of protein kinase A activity [GO:0034199]; blood coagulation [GO:0007596]; cellular response to glucagon stimulus [GO:0071377]; high-density lipoprotein particle assembly [GO:0034380]; male gonad development [GO:0008584]; renal water homeostasis [GO:0003091]; spermatogenesis [GO:0007283]; stimulatory C-type lectin receptor signaling pathway [GO:0002223]	ciliary base [GO:0097546]; cytosol [GO:0005829]; intercellular bridge [GO:0045171]; nucleoplasm [GO:0005654]	ATP binding [GO:0005524]; cAMP-dependent protein kinase activity [GO:0004691]	GO:0002223; GO:0003091; GO:0004691; GO:0005524; GO:0005654; GO:0005829; GO:0007283; GO:0007596; GO:0008584; GO:0034199; GO:0034380; GO:0045171; GO:0071377; GO:0097546	reviewed	Homo sapiens (Human)	18	8	26	0	1	0	0	0	0	0	0	0	0	0	0
458	TRINITY_DN312745_c1_g3	16.2614231800615	4.2376681062774	47.9681885334375	2.42566977179705e-06	4.19410499648708e-05	P22216	TRINITY_DN312745_c1_g3_i1	8.4e-21	Serine/threonine-protein kinase RAD53 (EC 2.7.12.1) (CHEK2 homolog) (Serine-protein kinase 1)	deoxyribonucleoside triphosphate biosynthetic process [GO:0009202]; DNA damage checkpoint [GO:0000077]; DNA repair [GO:0006281]; DNA replication initiation [GO:0006270]; mitotic DNA damage checkpoint [GO:0044773]; negative regulation of phosphorylation [GO:0042326]; protein localization [GO:0008104]; protein phosphorylation [GO:0006468]; signal transduction in response to DNA damage [GO:0042770]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]	ATP binding [GO:0005524]; DNA replication origin binding [GO:0003688]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; protein serine/threonine kinase activity [GO:0004674]; protein tyrosine kinase activity [GO:0004713]	GO:0000077; GO:0003688; GO:0004672; GO:0004674; GO:0004712; GO:0004713; GO:0005524; GO:0005634; GO:0005737; GO:0005829; GO:0006270; GO:0006281; GO:0006468; GO:0008104; GO:0009202; GO:0042326; GO:0042770; GO:0044773	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	19.01	34.44	28	33	19.17	21	12	0	0	0	0	0	0	0	0
459	TRINITY_DN312745_c1_g6	11.9608246939546	2.53116858572281	24.1648468929981	0.000130058603928937	0.0015541752091122	Q03042	TRINITY_DN312745_c1_g6_i1	1e-13	cGMP-dependent protein kinase, isozyme 1 (cGK) (EC 2.7.11.12)	larval somatic muscle development [GO:0007526]; protein phosphorylation [GO:0006468]	cytoplasm [GO:0005737]	ATP binding [GO:0005524]; cGMP binding [GO:0030553]; cGMP-dependent protein kinase activity [GO:0004692]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0004692; GO:0005524; GO:0005737; GO:0006468; GO:0007526; GO:0030553	reviewed	Drosophila melanogaster (Fruit fly)	10	2	3	4	6	4	7	0	0	0	0	0	0	0	0
460	TRINITY_DN312752_c3_g1	22.092277093671	9.16905281838579	335.934225428607	3.11869649053848e-15	1.07248507091295e-12	P80576	TRINITY_DN312752_c3_g1_i1	2.9e-126	Phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (DAHP synthase) (Phospho-2-keto-3-deoxyheptonate aldolase)	aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423]		3-deoxy-7-phosphoheptulonate synthase activity [GO:0003849]	GO:0003849; GO:0009073; GO:0009423	reviewed	Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)	973	1131	783	776	766	785	412	2	0	1	1	1	0	0	0
461	TRINITY_DN312753_c3_g2	-2.63470380222504	9.70069708114461	11.519212113241	0.00249112933572251	0.0188049885221004	Q42564	TRINITY_DN312753_c3_g2_i1	2e-95	L-ascorbate peroxidase 3 (AtAPx03) (EC 1.11.1.11)	cellular response to oxidative stress [GO:0034599]; hydrogen peroxide catabolic process [GO:0042744]; response to cytokinin [GO:0009735]; response to oxidative stress [GO:0006979]; response to reactive oxygen species [GO:0000302]	chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; glyoxysomal membrane [GO:0046861]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; plastid [GO:0009536]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]	heme binding [GO:0020037]; L-ascorbate peroxidase activity [GO:0016688]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]	GO:0000302; GO:0004601; GO:0005739; GO:0005773; GO:0005774; GO:0005777; GO:0005778; GO:0006979; GO:0009506; GO:0009507; GO:0009536; GO:0009735; GO:0009941; GO:0016021; GO:0016688; GO:0020037; GO:0034599; GO:0042744; GO:0046861; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)	539	439	623	139	70	120	230	2453	1838	1468	1381	935	566	1395	678
462	TRINITY_DN312754_c1_g1	8.50397681248811	1.72178243201621	15.7592960430992	0.000986753804242523	0.00869980065277489	P11670	TRINITY_DN312754_c1_g1_i1	4.8e-21	Basic form of pathogenesis-related protein 1 (PRP 1)	defense response [GO:0006952]; response to biotic stimulus [GO:0009607]	extracellular region [GO:0005576]		GO:0005576; GO:0006952; GO:0009607	reviewed	Nicotiana tabacum (Common tobacco)	3	10	1	1	1	0	1	0	0	0	0	0	0	0	0
463	TRINITY_DN312799_c0_g2	-8.77502743888526	4.52424641523625	9.34732435427441	0.0059750641808299	0.037059766812963	Q0WPU1	TRINITY_DN312799_c0_g2_i1	4.7e-123	Myosin-15 (Myosin XI I) (AtXI-I)	actin filament-based movement [GO:0030048]; actin filament organization [GO:0007015]; nuclear migration [GO:0007097]; regulation of establishment or maintenance of cell polarity regulating cell shape [GO:2000769]	cytoplasm [GO:0005737]; myosin complex [GO:0016459]; nuclear membrane [GO:0031965]	actin filament binding [GO:0051015]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]	GO:0003774; GO:0005516; GO:0005524; GO:0005737; GO:0007015; GO:0007097; GO:0016459; GO:0030048; GO:0031965; GO:0051015; GO:2000769	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	0	21	5	0	15	194	1	8	2	7	108	21	2
464	TRINITY_DN314109_c1_g1	-12.4869359413913	5.65178637431173	32.7373144661972	7.89533388699101e-06	0.000125313119898652	Q9MAB3	TRINITY_DN314109_c1_g1_i1	2.4e-188	Probable nucleolar protein 5-2 (MAR-binding NOP56/58 homolog 2) (Nucleolar protein 58-2)	ribosome biogenesis [GO:0042254]	box C/D snoRNP complex [GO:0031428]; membrane [GO:0016020]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]	snoRNA binding [GO:0030515]	GO:0005730; GO:0016020; GO:0030515; GO:0031428; GO:0032040; GO:0042254	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	2	0	1	1	0	153	146	207	138	46	22	66	72
465	TRINITY_DN314109_c2_g1	-3.73776378118991	6.23076969642153	9.22827986800644	0.00584077787952495	0.0362996135283729	O81832	TRINITY_DN314109_c2_g1_i1	1.4e-07	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (EC 2.7.11.1)	protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544]	plasma membrane [GO:0005886]	ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005516; GO:0005524; GO:0005886; GO:0006468; GO:0030246; GO:0048544	reviewed	Arabidopsis thaliana (Mouse-ear cress)	29.02	36.41	12.42	19	18.5	7.68	21.47	227.55	175.5	173.3	160.39	92.51	112.6	97.35	25.72
466	TRINITY_DN314157_c1_g1	-13.6487860010172	5.5543358308884	37.1535951190808	3.21066282042255e-06	5.4300554257966e-05	Q54W07	TRINITY_DN314157_c1_g1_i1	1.7e-43	EKC/KEOPS complex subunit bud32 (EC 3.6.-.-) (Atypical serine/threonine protein kinase bud32) (EC 2.7.11.1)	protein phosphorylation [GO:0006468]; tRNA processing [GO:0008033]; tRNA threonylcarbamoyladenosine metabolic process [GO:0070525]	cytosol [GO:0005829]; EKC/KEOPS complex [GO:0000408]; nucleus [GO:0005634]	ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein serine/threonine kinase activity [GO:0004674]	GO:0000408; GO:0004674; GO:0005524; GO:0005634; GO:0005829; GO:0006468; GO:0008033; GO:0016787; GO:0070525	reviewed	Dictyostelium discoideum (Slime mold)	0	2	0	0	0	1	0	178	156	106	150	46	16	49	78
467	TRINITY_DN314157_c1_g3	9.23337947724432	6.55028360919485	17.8400994534614	0.00032158143993925	0.00332874433649491	A2XRZ0	TRINITY_DN314157_c1_g3_i1	1e-11	Probable aldo-keto reductase 2 (EC 1.1.1.-)			oxidoreductase activity [GO:0016491]	GO:0016491	reviewed	Oryza sativa subsp. indica (Rice)	438	8	147	19	5	20	154	3	12	11	24	12	0	0	2
468	TRINITY_DN314160_c4_g1	-5.44851487159801	8.01881406404335	23.7787369223136	6.31743947843412e-05	0.000807953520072463	Q9C9C0	TRINITY_DN314160_c4_g1_i1	3.8e-41	Serine protease SPPA, chloroplastic (EC 3.4.21.-) (Signal peptide peptidase SPPA)	proteolysis [GO:0006508]; signal peptide processing [GO:0006465]	chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]	serine-type endopeptidase activity [GO:0004252]	GO:0004252; GO:0006465; GO:0006508; GO:0009507; GO:0009534; GO:0009535; GO:0009570; GO:0009941; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)	39	18	30	37	32	26	112	940	493	279	266	733	215	608	211
469	TRINITY_DN314167_c0_g1	2.31147223648772	10.642739394219	13.5533986043734	0.00123419000230311	0.010408223588905	Q9LMG7	TRINITY_DN314167_c0_g1_i2	2.1e-57	Probable inactive purple acid phosphatase 2	protein insertion into mitochondrial outer membrane [GO:0045040]; protein targeting to mitochondrion [GO:0006626]; regulation of carbohydrate metabolic process [GO:0006109]	chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; endosome [GO:0005768]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; mitochondrial envelope [GO:0005740]; mitochondrion [GO:0005739]; trans-Golgi network [GO:0005802]	acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872]; mitochondrion targeting sequence binding [GO:0030943]	GO:0003993; GO:0005576; GO:0005739; GO:0005740; GO:0005768; GO:0005794; GO:0005802; GO:0006109; GO:0006626; GO:0009507; GO:0009941; GO:0030943; GO:0045040; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)	2402	1791	1889	1118	881	706	1442	1965.99	1373.99	1376	1359	736	942	1210.03	684
470	TRINITY_DN314168_c2_g5	20.0068035597293	8.32227611196938	181.932766097235	2.02836126698163e-12	8.71913627959463e-11	O22941	TRINITY_DN314168_c2_g5_i1	7.4e-119	Insulin-degrading enzyme-like 1, peroxisomal (EC 3.4.24.-) (Insulysin-like 1) (Peroxisomal M16 protease) (Zinc-metallopeptidase)	proteolysis involved in cellular protein catabolic process [GO:0051603]	mitochondrion [GO:0005739]; peroxisome [GO:0005777]	metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]	GO:0004222; GO:0005739; GO:0005777; GO:0046872; GO:0051603	reviewed	Arabidopsis thaliana (Mouse-ear cress)	301	269	137	380	774	672	382	0	0	0	1	0	0	3	0
471	TRINITY_DN314170_c2_g1	-7.61812443889094	2.91002242796644	9.71264220267382	0.00484856432742997	0.0314373986911883	O65202	TRINITY_DN314170_c2_g1_i1	1.2e-84	Peroxisomal acyl-coenzyme A oxidase 1 (AOX 1) (EC 1.3.3.6) (Long-chain acyl-CoA oxidase) (AtCX1)	fatty acid beta-oxidation [GO:0006635]; fatty acid beta-oxidation using acyl-CoA oxidase [GO:0033540]; jasmonic acid biosynthetic process [GO:0009695]; lipid homeostasis [GO:0055088]; long-chain fatty acid metabolic process [GO:0001676]; response to cadmium ion [GO:0046686]; response to fungus [GO:0009620]; response to wounding [GO:0009611]	peroxisome [GO:0005777]; plasmodesma [GO:0009506]	acyl-CoA oxidase activity [GO:0003997]; FAD binding [GO:0071949]; fatty acid binding [GO:0005504]; flavin adenine dinucleotide binding [GO:0050660]	GO:0001676; GO:0003997; GO:0005504; GO:0005777; GO:0006635; GO:0009506; GO:0009611; GO:0009620; GO:0009695; GO:0033540; GO:0046686; GO:0050660; GO:0055088; GO:0071949	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	1	0	1	0	0	0	35	46	7	2	2	1	2	5
472	TRINITY_DN314173_c1_g1	-6.14213786195551	8.30149605181655	28.9791054065379	1.80394646284317e-05	0.00025729098168201	Q9M084	TRINITY_DN314173_c1_g1_i1	3.9e-200	Aspartate--tRNA ligase 2, cytoplasmic (EC 6.1.1.12) (Aspartyl-tRNA synthetase) (AspRS) (Protein IMPAIRED IN BABA-INDUCED DISEASE IMMUNITY 1)	aspartyl-tRNA aminoacylation [GO:0006422]; defense response to fungus [GO:0050832]; response to cadmium ion [GO:0046686]	aminoacyl-tRNA synthetase multienzyme complex [GO:0017101]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]	aspartate-tRNA ligase activity [GO:0004815]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]	GO:0003677; GO:0003723; GO:0004815; GO:0005524; GO:0005783; GO:0005829; GO:0006422; GO:0017101; GO:0046686; GO:0046872; GO:0050832	reviewed	Arabidopsis thaliana (Mouse-ear cress)	29	46	16	11	95	13	144	717	659	765	557	272	152	1266	466
473	TRINITY_DN314173_c2_g1	-3.91158337989116	6.861367345167	10.1843885853582	0.00405755516855606	0.027367290209588	Q7TPQ3	TRINITY_DN314173_c2_g1_i7	3e-13	E3 ubiquitin-protein ligase SHPRH (EC 2.3.2.27) (EC 3.6.4.-) (RING-type E3 ubiquitin transferase SHPRH) (SNF2, histone-linker, PHD and RING finger domain-containing helicase)	cellular response to DNA damage stimulus [GO:0006974]; DNA repair [GO:0006281]; nucleosome assembly [GO:0006334]; protein polyubiquitination [GO:0000209]	nucleosome [GO:0000786]; nucleus [GO:0005634]	ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]	GO:0000209; GO:0000786; GO:0003677; GO:0004386; GO:0004842; GO:0005524; GO:0005634; GO:0006281; GO:0006334; GO:0006974; GO:0031625; GO:0046872; GO:0061630	reviewed	Mus musculus (Mouse)	82	121	40	5	2	9	24	284	283	239	113	127	136	223	167
474	TRINITY_DN314176_c0_g1	8.05313199027147	1.74289078126812	10.2636252617496	0.00519640019690119	0.0328892814098347	Q94AU2	TRINITY_DN314176_c0_g1_i1	7.6e-19	25.3 kDa vesicle transport protein (AtSEC22)	endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; protein transport [GO:0015031]; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum [GO:0006890]; vesicle fusion with Golgi apparatus [GO:0048280]	endoplasmic reticulum [GO:0005783]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; endoplasmic reticulum membrane [GO:0005789]; ER to Golgi transport vesicle membrane [GO:0012507]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]	SNAP receptor activity [GO:0005484]	GO:0000139; GO:0005484; GO:0005783; GO:0005789; GO:0005793; GO:0005794; GO:0005886; GO:0006888; GO:0006890; GO:0012507; GO:0015031; GO:0016021; GO:0031201; GO:0048280	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	3	0	9	0	0	2	0	0	0	0	0	0	0	0
475	TRINITY_DN314176_c1_g1	-4.81971521885084	9.91159059307217	31.6370858755835	9.99407919744636e-06	0.000154658375580482	A0KP37	TRINITY_DN314176_c1_g1_i1	1.7e-22	Siroheme synthase 2 [Includes: Uroporphyrinogen-III C-methyltransferase 2 (Urogen III methylase 2) (EC 2.1.1.107) (SUMT 2) (Uroporphyrinogen III methylase 2) (UROM 2); Precorrin-2 dehydrogenase 2 (EC 1.3.1.76); Sirohydrochlorin ferrochelatase 2 (EC 4.99.1.4)]	cobalamin biosynthetic process [GO:0009236]; siroheme biosynthetic process [GO:0019354]		NAD binding [GO:0051287]; precorrin-2 dehydrogenase activity [GO:0043115]; sirohydrochlorin ferrochelatase activity [GO:0051266]; uroporphyrin-III C-methyltransferase activity [GO:0004851]	GO:0004851; GO:0009236; GO:0019354; GO:0043115; GO:0051266; GO:0051287	reviewed	Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240)	231	149	224	120	94	88	303	3166	1930	3213	2078	691	517	1980	1376
476	TRINITY_DN314179_c1_g1	3.07152989863072	10.8180440731379	16.8503151726854	0.000432408262751681	0.00424858277211572	Q99ND9	TRINITY_DN314179_c1_g1_i8	1.3e-06	RWD domain-containing protein 1 (Small androgen receptor-interacting protein)	androgen receptor signaling pathway [GO:0030521]; cell aging [GO:0007569]; cellular response to oxidative stress [GO:0034599]; cellular response to testosterone stimulus [GO:0071394]; cytoplasmic translation [GO:0002181]; positive regulation of androgen receptor activity [GO:2000825]	cytoplasm [GO:0005737]; polysome [GO:0005844]		GO:0002181; GO:0005737; GO:0005844; GO:0007569; GO:0030521; GO:0034599; GO:0071394; GO:2000825	reviewed	Rattus norvegicus (Rat)	1581	686	804	1927	1617	1410	4035	1496	1095	1177	923	810	480	1165	587
477	TRINITY_DN314196_c0_g1	19.8166117550594	8.26981912908244	209.893799973355	4.61935732212833e-13	2.6975303607523e-11	O75643	TRINITY_DN314196_c0_g1_i1	0	U5 small nuclear ribonucleoprotein 200 kDa helicase (EC 3.6.4.13) (Activating signal cointegrator 1 complex subunit 3-like 1) (BRR2 homolog) (U5 snRNP-specific 200 kDa protein) (U5-200KD)	cis assembly of pre-catalytic spliceosome [GO:0000354]; mRNA splicing, via spliceosome [GO:0000398]; osteoblast differentiation [GO:0001649]; spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) [GO:0000388]	catalytic step 2 spliceosome [GO:0071013]; membrane [GO:0016020]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; post-mRNA release spliceosomal complex [GO:0071014]; spliceosomal complex [GO:0005681]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U5 snRNP [GO:0005682]	ATP binding [GO:0005524]; ATP-dependent helicase activity [GO:0008026]; ATP-dependent RNA helicase activity [GO:0004004]; identical protein binding [GO:0042802]; RNA binding [GO:0003723]	GO:0000354; GO:0000388; GO:0000398; GO:0001649; GO:0003723; GO:0004004; GO:0005524; GO:0005634; GO:0005654; GO:0005681; GO:0005682; GO:0008026; GO:0016020; GO:0042802; GO:0046540; GO:0071013; GO:0071014	reviewed	Homo sapiens (Human)	328	396	177	421	782	506	367	0	0	0	1	0	1	3	0
478	TRINITY_DN314218_c0_g2	-7.05871959883711	7.57358273256188	31.7941733384246	9.6604072044607e-06	0.000150246031647266	Q00IB6	TRINITY_DN314218_c0_g2_i1	5.3e-57	RNA polymerase II C-terminal domain phosphatase-like 4 (FCP-like 4) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 4) (AtCPL4) (CTD phosphatase-like 4)	dephosphorylation of RNA polymerase II C-terminal domain [GO:0070940]; response to salt stress [GO:0009651]	nucleus [GO:0005634]	metal ion binding [GO:0046872]; protein C-terminus binding [GO:0008022]; RNA binding [GO:0003723]; RNA polymerase II CTD heptapeptide repeat phosphatase activity [GO:0008420]	GO:0003723; GO:0005634; GO:0008022; GO:0008420; GO:0009651; GO:0046872; GO:0070940	reviewed	Arabidopsis thaliana (Mouse-ear cress)	66	57	28	5	0	8	7	685	681	665	392	181	131	274	156
479	TRINITY_DN314234_c0_g5	24.9354642513911	10.073906084018	397.454778597105	1.10956879093385e-14	1.90575791791826e-12	Q55D16	TRINITY_DN314234_c0_g5_i1	3.3e-43	KIN17-like protein	cellular response to DNA damage stimulus [GO:0006974]; DNA replication [GO:0006260]	nucleus [GO:0005634]	double-stranded DNA binding [GO:0003690]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]	GO:0003690; GO:0003723; GO:0005634; GO:0006260; GO:0006974; GO:0046872	reviewed	Dictyostelium discoideum (Slime mold)	2226	1919	1515	1255	1647	1281	794	2	0	1	3	0	0	0	0
480	TRINITY_DN314236_c0_g1	18.9316442425748	8.88768261815068	186.666886428795	1.5573196708571e-12	7.08809467838635e-11	Q12019	TRINITY_DN314236_c0_g1_i1	2.3e-301	Midasin (Dynein-related AAA-ATPase REA1) (MIDAS-containing protein) (Ribosome export/assembly protein 1)	protein-RNA complex remodeling [GO:0110136]; regulation of ribosomal subunit export from nucleus [GO:2000200]; ribosomal large subunit assembly [GO:0000027]; rRNA processing [GO:0006364]	mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]	ATPase activity [GO:0016887]; ATP binding [GO:0005524]	GO:0000027; GO:0005524; GO:0005634; GO:0005654; GO:0005730; GO:0005739; GO:0006364; GO:0016887; GO:0110136; GO:2000200	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	213	406	90	720	1503	864	713	0	0	0	3	1	0	3	0
481	TRINITY_DN314275_c4_g1	9.3316003921782	3.40328409254936	15.8124009513406	0.000595108364887437	0.00559835984597756	O93428	TRINITY_DN314275_c4_g1_i1	8.2e-34	Cathepsin D (EC 3.4.23.5)	proteolysis [GO:0006508]	lysosome [GO:0005764]	aspartic-type endopeptidase activity [GO:0004190]	GO:0004190; GO:0005764; GO:0006508	reviewed	Chionodraco hamatus (Antarctic teleost icefish) (Chaenichthys rhinoceratus hamatus)	34	15	21	1	1	4	6	0	0	1	2	1	0	0	0
482	TRINITY_DN314626_c2_g5	-9.65209859807611	2.75387821070908	13.8400217180342	0.00134909453991721	0.0111345269361167	O32472	TRINITY_DN314626_c2_g5_i2	8.1e-17	(R)-specific enoyl-CoA hydratase (EC 4.2.1.119)	fatty acid biosynthetic process [GO:0006633]; oxidation-reduction process [GO:0055114]	fatty acid synthase complex [GO:0005835]	fatty acid synthase activity [GO:0004312]; lyase activity [GO:0016829]	GO:0004312; GO:0005835; GO:0006633; GO:0016829; GO:0055114	reviewed	Aeromonas caviae (Aeromonas punctata)	0	0	1	0	0	0	0	16	7	16	11	2	4	17	7
483	TRINITY_DN314627_c4_g1	-3.17715461016588	8.76859567623986	12.2349523429567	0.00193530596648484	0.0150119598152145	Q9M9E8	TRINITY_DN314627_c4_g1_i1	2.3e-305	F-box protein At1g78280		cytosol [GO:0005829]		GO:0005829	reviewed	Arabidopsis thaliana (Mouse-ear cress)	304	94	204	56	37	97	105	1095	825	926	469	602	389	628	792
484	TRINITY_DN314629_c0_g1	3.26523463616883	13.8900620968754	16.1798086519278	0.000530923384895123	0.00507183898082019	Q6DJC8	TRINITY_DN314629_c0_g1_i3	1.8e-06	Transmembrane protein 53-B		integral component of membrane [GO:0016021]		GO:0016021	reviewed	Xenopus laevis (African clawed frog)	16293	12565	31310	16901	7971	7829	9227	9419	12814	12547	7914	4532	11822	8456	5226
485	TRINITY_DN314641_c0_g1	12.4207438449318	3.67127014168805	15.0997958794197	0.00118400091139955	0.0100949939966436	P07872	TRINITY_DN314641_c0_g1_i2	4.7e-104	Peroxisomal acyl-coenzyme A oxidase 1 (AOX) (EC 1.3.3.6) (Palmitoyl-CoA oxidase) [Cleaved into: Peroxisomal acyl-CoA oxidase 1, A chain; Peroxisomal acyl-CoA oxidase 1, B chain; Peroxisomal acyl-CoA oxidase 1, C chain]	fatty acid beta-oxidation using acyl-CoA oxidase [GO:0033540]; fatty acid oxidation [GO:0019395]; generation of precursor metabolites and energy [GO:0006091]; lipid homeostasis [GO:0055088]; lipid metabolic process [GO:0006629]; prostaglandin metabolic process [GO:0006693]; very long-chain fatty acid metabolic process [GO:0000038]	peroxisomal matrix [GO:0005782]; peroxisome [GO:0005777]	acyl-CoA oxidase activity [GO:0003997]; FAD binding [GO:0071949]; fatty acid binding [GO:0005504]; flavin adenine dinucleotide binding [GO:0050660]; palmitoyl-CoA oxidase activity [GO:0016401]; protein homodimerization activity [GO:0042803]	GO:0000038; GO:0003997; GO:0005504; GO:0005777; GO:0005782; GO:0006091; GO:0006629; GO:0006693; GO:0016401; GO:0019395; GO:0033540; GO:0042803; GO:0050660; GO:0055088; GO:0071949	reviewed	Rattus norvegicus (Rat)	0	202	0	0	2	2	0	0	0	0	0	0	0	0	0
486	TRINITY_DN314643_c0_g3	12.1986623260558	9.85725597108415	186.907709496726	1.53677195280618e-12	7.08809467838635e-11	P20825	TRINITY_DN314643_c0_g3_i1	1.1e-55	Retrovirus-related Pol polyprotein from transposon 297 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]	DNA integration [GO:0015074]		aspartic-type endopeptidase activity [GO:0004190]; endonuclease activity [GO:0004519]; nucleic acid binding [GO:0003676]; RNA-directed DNA polymerase activity [GO:0003964]	GO:0003676; GO:0003964; GO:0004190; GO:0004519; GO:0015074	reviewed	Drosophila melanogaster (Fruit fly)	2799	2129	1797	922	390	544	651	37	82	28	22	10	22	36	23
487	TRINITY_DN314645_c3_g1	21.0113262887414	8.24371484236491	197.896500046575	8.51606493997653e-13	4.53254956583416e-11	P48510	TRINITY_DN314645_c3_g1_i1	1.9e-08	Ubiquitin domain-containing protein DSK2	protein localization to vacuole [GO:0072665]; spindle pole body duplication [GO:0030474]; ubiquitin-dependent ERAD pathway [GO:0030433]; ubiquitin-dependent protein catabolic process [GO:0006511]	cytosol [GO:0005829]; nucleus [GO:0005634]	polyubiquitin modification-dependent protein binding [GO:0031593]; protein binding, bridging [GO:0030674]	GO:0005634; GO:0005829; GO:0006511; GO:0030433; GO:0030474; GO:0030674; GO:0031593; GO:0072665	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	536	525	491	326	425	395	218	0	0	0	2	0	0	1	0
488	TRINITY_DN314645_c3_g2	9.0121335100312	2.01483627478285	14.0786069416563	0.00158308093965315	0.0127594674693399	Q7YR70	TRINITY_DN314645_c3_g2_i1	2.2e-13	Angio-associated migratory cell protein	angiogenesis [GO:0001525]; cell differentiation [GO:0030154]; positive regulation of endothelial cell migration [GO:0010595]; ribosomal large subunit biogenesis [GO:0042273]; smooth muscle cell migration [GO:0014909]	cell surface [GO:0009986]; cytosol [GO:0005829]; intercellular bridge [GO:0045171]; microtubule cytoskeleton [GO:0015630]; plasma membrane [GO:0005886]	unfolded protein binding [GO:0051082]	GO:0001525; GO:0005829; GO:0005886; GO:0009986; GO:0010595; GO:0014909; GO:0015630; GO:0030154; GO:0042273; GO:0045171; GO:0051082	reviewed	Canis lupus familiaris (Dog) (Canis familiaris)	2	16	6	0	1	1	0	0	0	0	0	0	0	0	0
489	TRINITY_DN314645_c3_g3	20.8151331171171	7.06132864222441	135.907479451247	2.21885523453426e-10	7.15349682383701e-09	Q7YR70	TRINITY_DN314645_c3_g3_i1	1.7e-25	Angio-associated migratory cell protein	angiogenesis [GO:0001525]; cell differentiation [GO:0030154]; positive regulation of endothelial cell migration [GO:0010595]; ribosomal large subunit biogenesis [GO:0042273]; smooth muscle cell migration [GO:0014909]	cell surface [GO:0009986]; cytosol [GO:0005829]; intercellular bridge [GO:0045171]; microtubule cytoskeleton [GO:0015630]; plasma membrane [GO:0005886]	unfolded protein binding [GO:0051082]	GO:0001525; GO:0005829; GO:0005886; GO:0009986; GO:0010595; GO:0014909; GO:0015630; GO:0030154; GO:0042273; GO:0045171; GO:0051082	reviewed	Canis lupus familiaris (Dog) (Canis familiaris)	173	345	203	150	162	188	97	0	0	0	1	0	0	0	0
490	TRINITY_DN314831_c0_g1	13.2584131222664	3.12612102292943	26.5529330710599	7.92070739105422e-05	0.0009965280233867	P38404	TRINITY_DN314831_c0_g1_i1	1.8e-64	Guanine nucleotide-binding protein G(o) subunit alpha	adenylate cyclase-modulating G protein-coupled receptor signaling pathway [GO:0007188]		G-protein beta/gamma-subunit complex binding [GO:0031683]; GTPase activity [GO:0003924]; GTP binding [GO:0005525]; metal ion binding [GO:0046872]	GO:0003924; GO:0005525; GO:0007188; GO:0031683; GO:0046872	reviewed	Locusta migratoria (Migratory locust)	7	41	18	2	1	8	1	0	0	0	0	0	0	0	0
491	TRINITY_DN314831_c1_g1	21.2431052993673	10.2218582532163	271.53570741533	3.0607472058829e-14	2.96031643818987e-12	A8XDJ2	TRINITY_DN314831_c1_g1_i1	1.6e-20	Ubiquitin thioesterase otubain-like (EC 3.4.19.12) (Deubiquitinating enzyme otubain-like) (Ubiquitin-specific-processing protease otubain-like)	protein K48-linked deubiquitination [GO:0071108]	nucleus [GO:0005634]	NEDD8-specific protease activity [GO:0019784]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; ubiquitin binding [GO:0043130]	GO:0004843; GO:0005634; GO:0019784; GO:0043130; GO:0071108	reviewed	Caenorhabditis briggsae	2565	3202	1832	1421	1253	1351	613	1	0	3	5	0	0	2	3
492	TRINITY_DN314832_c0_g1	20.3830878235088	6.8847674789197	129.462428524408	3.39605966430671e-10	1.01065429432974e-08	A5WVX1	TRINITY_DN314832_c0_g1_i1	4.5e-12	eEF1A lysine and N-terminal methyltransferase (Methyltransferase-like protein 13) [Includes: eEF1A lysine methyltransferase (EC 2.1.1.-); eEF1A N-terminal methyltransferase (EC 2.1.1.-)]	protein methylation [GO:0006479]		methyltransferase activity [GO:0008168]	GO:0006479; GO:0008168	reviewed	Danio rerio (Zebrafish) (Brachydanio rerio)	158	218	142	147	214	138	140	0	0	0	1	0	0	0	0
493	TRINITY_DN314834_c0_g2	22.4431451857679	9.20949788784889	318.440440227881	5.55320861989373e-15	1.22765576275508e-12	Q9XJ54	TRINITY_DN314834_c0_g2_i1	3.1e-20	Nuclear transport factor 2 (NTF-2)	nucleocytoplasmic transport [GO:0006913]; protein transport [GO:0015031]	cytoplasm [GO:0005737]; nuclear pore central transport channel [GO:0044613]		GO:0005737; GO:0006913; GO:0015031; GO:0044613	reviewed	Oryza sativa subsp. japonica (Rice)	1032	1496	954	723	724	688	376	0	0	0	1	1	0	2	0
494	TRINITY_DN314842_c0_g2	21.9314014839689	10.5557299900649	280.760620549573	2.14335688302946e-14	2.45692205665784e-12	Q93Y39	TRINITY_DN314842_c0_g2_i1	2.9e-67	DEAD-box ATP-dependent RNA helicase 13 (EC 3.6.4.13)			ATP binding [GO:0005524]; helicase activity [GO:0004386]; RNA binding [GO:0003723]	GO:0003723; GO:0004386; GO:0005524	reviewed	Arabidopsis thaliana (Mouse-ear cress)	2439	4272	1835	1964	2218	1928	986	2	0	1	6	1	0	4	0
495	TRINITY_DN314848_c0_g1	-4.13701862301021	10.3983366871933	29.1856969213416	1.72108187324628e-05	0.000248273568109339	B9N843	TRINITY_DN314848_c0_g1_i1	2.2e-16	Biotin carboxylase 2, chloroplastic (EC 6.3.4.14) (Acetyl-CoA carboxylase subunit A 2) (ACC) (EC 6.4.1.2)	fatty acid biosynthetic process [GO:0006633]; malonyl-CoA biosynthetic process [GO:2001295]	chloroplast [GO:0009507]	acetyl-CoA carboxylase activity [GO:0003989]; ATP binding [GO:0005524]; biotin carboxylase activity [GO:0004075]; metal ion binding [GO:0046872]	GO:0003989; GO:0004075; GO:0005524; GO:0006633; GO:0009507; GO:0046872; GO:2001295	reviewed	Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)	864	982	411	133	44	160	190	3060	2894	2953	2243	1918	1761	2653	1413
496	TRINITY_DN314863_c3_g4	3.1230922764308	16.8836892434153	12.7332757837279	0.00162904033344757	0.0130281132610342	Q6K5Q0	TRINITY_DN314863_c3_g4_i2	4.1e-58	Putative germin-like protein 2-1		apoplast [GO:0048046]; cell wall [GO:0005618]	manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735]	GO:0005618; GO:0030145; GO:0045735; GO:0048046	reviewed	Oryza sativa subsp. japonica (Rice)	64790.14	144683.29	106887.25	128813.64	210498.35	103860.86	122342.72	75412.39	64678.04	51980.49	88119.19	47513.49	75730.8	44388.06	84137.71
497	TRINITY_DN314864_c1_g2	22.1438221166004	14.5826255266962	255.719134809447	5.79167809766046e-14	5.12149820350261e-12	P53995	TRINITY_DN314864_c1_g2_i4	9.4e-35	Anaphase-promoting complex subunit 1 (APC1) (Cyclosome subunit 1) (Mitotic checkpoint regulator) (Testis-specific gene 24 protein)	anaphase-promoting complex-dependent catabolic process [GO:0031145]; cell division [GO:0051301]; metaphase/anaphase transition of mitotic cell cycle [GO:0007091]; protein K11-linked ubiquitination [GO:0070979]	anaphase-promoting complex [GO:0005680]; nucleus [GO:0005634]		GO:0005634; GO:0005680; GO:0007091; GO:0031145; GO:0051301; GO:0070979	reviewed	Mus musculus (Mouse)	30727	21965	7460	58948	55500	41187	19065	12	11	12	29	19	10	72	21
498	TRINITY_DN314883_c0_g1	5.16635762144625	7.26792785842712	12.3046405528813	0.00188891798426253	0.014725947509553	Q93YS4	TRINITY_DN314883_c0_g1_i4	4.8e-86	ABC transporter G family member 22 (ABC transporter ABCG.22) (AtABCG22) (White-brown complex homolog protein 23) (AtWBC23)	response to water deprivation [GO:0009414]; transmembrane transport [GO:0055085]; transpiration [GO:0010148]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	ATPase activity [GO:0016887]; ATPase-coupled transmembrane transporter activity [GO:0042626]; ATP binding [GO:0005524]	GO:0005524; GO:0005886; GO:0009414; GO:0010148; GO:0016021; GO:0016887; GO:0042626; GO:0055085	reviewed	Arabidopsis thaliana (Mouse-ear cress)	18	432	50	115	795	60	181	169	14	48	24	9	139	19	3
499	TRINITY_DN316210_c2_g1	-8.40147685954151	6.09330119070524	28.630903160303	1.95361017811795e-05	0.000274837431876138	F4JI44	TRINITY_DN316210_c2_g1_i1	4e-111	Nodulin homeobox (NDX1 homeobox protein homolog) (AtNDX1)	flower development [GO:0009908]; negative regulation of antisense RNA transcription [GO:0060195]	nucleolus [GO:0005730]; nucleus [GO:0005634]	single-stranded DNA binding [GO:0003697]	GO:0003697; GO:0005634; GO:0005730; GO:0009908; GO:0060195	reviewed	Arabidopsis thaliana (Mouse-ear cress)	11	6	16	1	3	1	0	298	257	206	107	76	66	83	55
500	TRINITY_DN316210_c3_g3	-9.91432928598931	6.37075355950806	34.2271835933295	5.78162530762484e-06	9.46779382386184e-05	P37706	TRINITY_DN316210_c3_g3_i1	8.9e-83	Ribosome-recycling factor, chloroplastic (RRF) (Nuclear located protein D2) (Ribosome-releasing factor, chloroplastic) (Fragment)	translation [GO:0006412]	chloroplast [GO:0009507]		GO:0006412; GO:0009507	reviewed	Daucus carota (Wild carrot)	7	6	4	2	0	1	3	277	217	226	187	229	33	84	68
501	TRINITY_DN316221_c2_g2	-7.07335650081806	5.27617502064109	14.2045364852434	0.000995066052045981	0.00869980065277489	Q8QHA5	TRINITY_DN316221_c2_g2_i2	1.1e-55	DNA replication ATP-dependent helicase/nuclease DNA2 (DNA replication ATP-dependent helicase-like homolog) [Includes: DNA replication nuclease DNA2 (EC 3.1.-.-); DNA replication ATP-dependent helicase DNA2 (EC 3.6.4.12)]	base-excision repair [GO:0006284]; DNA double-strand break processing [GO:0000729]; DNA replication [GO:0006260]; DNA replication, Okazaki fragment processing [GO:0033567]; DNA replication, removal of RNA primer [GO:0043137]; DNA replication checkpoint [GO:0000076]; double-strand break repair via single-strand annealing [GO:0045002]; mitochondrial DNA replication [GO:0006264]; positive regulation of DNA replication [GO:0045740]	mitochondrion [GO:0005739]; nucleus [GO:0005634]	4 iron, 4 sulfur cluster binding [GO:0051539]; 5'-3' DNA helicase activity [GO:0043139]; 5'-3' exonuclease activity [GO:0008409]; 5'-flap endonuclease activity [GO:0017108]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA helicase activity [GO:0003678]; metal ion binding [GO:0046872]; nuclease activity [GO:0004518]; single-stranded DNA-dependent ATPase activity [GO:0043142]; site-specific endodeoxyribonuclease activity, specific for altered base [GO:0016890]	GO:0000076; GO:0000729; GO:0003677; GO:0003678; GO:0004518; GO:0005524; GO:0005634; GO:0005739; GO:0006260; GO:0006264; GO:0006284; GO:0008409; GO:0016890; GO:0017108; GO:0033567; GO:0043137; GO:0043139; GO:0043142; GO:0045002; GO:0045740; GO:0046872; GO:0051539	reviewed	Xenopus laevis (African clawed frog)	5	15	2	2	0	0	5	219	148	77	57	39	30	57	18
502	TRINITY_DN316221_c2_g4	-6.83733758404446	3.19088703858496	8.93769433211896	0.0065419813085646	0.0398571499015894	Q9URU2	TRINITY_DN316221_c2_g4_i2	7.5e-47	DNA replication ATP-dependent helicase/nuclease dna2 [Includes: DNA replication nuclease dna2 (EC 3.1.-.-); DNA replication ATP-dependent helicase dna2 (EC 3.6.4.12)]	DNA repair [GO:0006281]; Okazaki fragment processing involved in mitotic DNA replication [GO:1903461]; removal of RNA primer involved in mitotic DNA replication [GO:1903469]; replication fork processing [GO:0031297]; replication fork reversal [GO:0071932]; response to intra-S DNA damage checkpoint signaling [GO:0072429]; telomeric 3' overhang formation [GO:0031860]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; nuclear chromosome, telomeric region [GO:0000784]; nuclear replication fork [GO:0043596]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; replication fork [GO:0005657]; site of double-strand break [GO:0035861]	4 iron, 4 sulfur cluster binding [GO:0051539]; 5'-flap endonuclease activity [GO:0017108]; 5' overhang single-stranded DNA endodeoxyribonuclease activity [GO:1990601]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; nuclease activity [GO:0004518]; protein kinase binding [GO:0019901]; RNA binding [GO:0003723]; single-stranded DNA 5'-3' exodeoxyribonuclease activity [GO:0045145]; single-stranded DNA-dependent ATPase activity [GO:0043142]	GO:0000784; GO:0003677; GO:0003682; GO:0003723; GO:0004003; GO:0004518; GO:0005524; GO:0005634; GO:0005654; GO:0005657; GO:0005737; GO:0005829; GO:0006281; GO:0017108; GO:0019901; GO:0031297; GO:0031860; GO:0035861; GO:0043142; GO:0043596; GO:0045145; GO:0046872; GO:0051539; GO:0071932; GO:0072429; GO:1903461; GO:1903469; GO:1990601	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	3	0	1	0	0	0	1	11	9	11	17	15	5	19	15
503	TRINITY_DN316223_c6_g3	-6.06072234555864	8.39105893909112	33.7847098348289	6.33654008337576e-06	0.000101614464031337	Q8S9J6	TRINITY_DN316223_c6_g3_i1	7.1e-80	Aspartyl protease family protein At5g10770 (EC 3.4.23.-)	protein catabolic process [GO:0030163]; proteolysis [GO:0006508]	anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]	aspartic-type endopeptidase activity [GO:0004190]	GO:0004190; GO:0005886; GO:0006508; GO:0030163; GO:0031225	reviewed	Arabidopsis thaliana (Mouse-ear cress)	80	42	18	35	11	63	23	544	559	423	314	758	610	628	968
504	TRINITY_DN316228_c3_g1	-4.82801423908781	9.32697480990176	46.157288516713	6.22889402515617e-07	1.16135102456978e-05	A4QP78	TRINITY_DN316228_c3_g1_i4	7.5e-07	CCR4-NOT transcription complex subunit 11	gene silencing by RNA [GO:0031047]; regulation of translation [GO:0006417]	CCR4-NOT complex [GO:0030014]; cytoplasm [GO:0005737]; nucleus [GO:0005634]		GO:0005634; GO:0005737; GO:0006417; GO:0030014; GO:0031047	reviewed	Danio rerio (Zebrafish) (Brachydanio rerio)	164	174	112	108	88	68	174	1919	1355	1364	857	818	786	1680	871
505	TRINITY_DN316260_c0_g1	21.2553209743742	7.60055629328642	164.494578828692	4.06936008732731e-11	1.44766315750322e-09	A2QY22	TRINITY_DN316260_c0_g1_i1	1.8e-77	ATP-dependent DNA helicase chl1 (EC 3.6.4.12) (Chromosome loss protein 1)	cell cycle [GO:0007049]; nucleobase-containing compound metabolic process [GO:0006139]	nucleus [GO:0005634]	ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]	GO:0003677; GO:0004003; GO:0005524; GO:0005634; GO:0006139; GO:0007049	reviewed	Aspergillus niger (strain CBS 513.88 / FGSC A1513)	298	447	162	302	266	297	151	0	0	2	0	0	0	0	0
506	TRINITY_DN316260_c0_g3	10.7486951945003	2.18894612368052	21.5139998335634	0.000233995661304534	0.00250593969459354	A1D8E4	TRINITY_DN316260_c0_g3_i1	2.9e-43	ATP-dependent DNA helicase chl1 (EC 3.6.4.12) (Chromosome loss protein 1)	cell cycle [GO:0007049]; nucleobase-containing compound metabolic process [GO:0006139]	nucleus [GO:0005634]	ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]	GO:0003677; GO:0004003; GO:0005524; GO:0005634; GO:0006139; GO:0007049	reviewed	Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) (Aspergillus fischerianus)	3	6	2	8	4	3	1	0	0	0	0	0	0	0	0
507	TRINITY_DN316647_c2_g1	3.10503839219345	8.30104540252677	10.2479561456342	0.00396227118943868	0.0268930467791946	O14134	TRINITY_DN316647_c2_g1_i3	6.6e-36	mRNA export factor elf1	poly(A)+ mRNA export from nucleus [GO:0016973]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; protein-containing complex [GO:0032991]	ATPase activity [GO:0016887]; ATP binding [GO:0005524]	GO:0005524; GO:0005634; GO:0005737; GO:0005829; GO:0016887; GO:0016973; GO:0032991	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	24	321	285	473	617	192	307	751	92	475	270	33	134	88	42
508	TRINITY_DN316649_c0_g1	21.5676638863997	11.3026247083034	240.762001138114	1.09558643158135e-13	8.47710001436069e-12	Q5R962	TRINITY_DN316649_c0_g1_i1	1.7e-49	tRNA (guanine(10)-N2)-methyltransferase homolog (EC 2.1.1.-) (tRNA guanosine-2'-O-methyltransferase TRM11 homolog)	tRNA processing [GO:0008033]		methyltransferase activity [GO:0008168]; tRNA binding [GO:0000049]	GO:0000049; GO:0008033; GO:0008168	reviewed	Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii)	4260	5858	4173	2885	3394	3140	1569	6	1	3	15	0	0	6	1
509	TRINITY_DN316900_c0_g1	18.5827589355515	5.33825334913601	66.9772872042294	2.63888086151685e-07	5.2354719656376e-06	Q03168	TRINITY_DN316900_c0_g1_i1	2.3e-10	Lysosomal aspartic protease (EC 3.4.23.-)		lysosome [GO:0005764]	aspartic-type endopeptidase activity [GO:0004190]	GO:0004190; GO:0005764	reviewed	Aedes aegypti (Yellowfever mosquito) (Culex aegypti)	67	82.99	33	50.88	44	78	16	0	0	0	0	0	0	0	0
510	TRINITY_DN316900_c0_g2	17.4339381504514	4.76521453301963	55.692949884126	9.17331959947456e-07	1.67008377413963e-05	P42210	TRINITY_DN316900_c0_g2_i3	4e-23	Phytepsin (EC 3.4.23.40) (Aspartic proteinase) [Cleaved into: Phytepsin 32 kDa subunit; Phytepsin 29 kDa subunit; Phytepsin 16 kDa subunit; Phytepsin 11 kDa subunit]	lipid metabolic process [GO:0006629]	vacuole [GO:0005773]	aspartic-type endopeptidase activity [GO:0004190]	GO:0004190; GO:0005773; GO:0006629	reviewed	Hordeum vulgare (Barley)	40.7	76.31	29.53	23.64	27	46.35	12.02	0	0	0	0	0	0	0	0
511	TRINITY_DN316900_c0_g3	20.8057371669807	7.17291487971585	134.107347044875	2.49442878256053e-10	7.76960632868147e-09	Q03168	TRINITY_DN316900_c0_g3_i1	4.1e-23	Lysosomal aspartic protease (EC 3.4.23.-)		lysosome [GO:0005764]	aspartic-type endopeptidase activity [GO:0004190]	GO:0004190; GO:0005764	reviewed	Aedes aegypti (Yellowfever mosquito) (Culex aegypti)	284.81	224.89	328.41	111.76	122.09	176.69	82.06	0	0	0	0	0	0	0	1
512	TRINITY_DN316904_c8_g6	6.45702117204099	1.5704342726604	8.686938843295	0.00795485995821538	0.0467178208172232	P49632	TRINITY_DN316904_c8_g6_i1	2.1e-36	Ubiquitin-60S ribosomal protein L40 (CEP52) [Cleaved into: Ubiquitin; 60S ribosomal protein L40]	modification-dependent protein catabolic process [GO:0019941]; polarity specification of anterior/posterior axis [GO:0009949]; protein ubiquitination [GO:0016567]; translation [GO:0006412]	cytoplasm [GO:0005737]; nucleus [GO:0005634]; ribosome [GO:0005840]	protein tag [GO:0031386]; structural constituent of ribosome [GO:0003735]; ubiquitin protein ligase binding [GO:0031625]	GO:0003735; GO:0005634; GO:0005737; GO:0005840; GO:0006412; GO:0009949; GO:0016567; GO:0019941; GO:0031386; GO:0031625	reviewed	Caenorhabditis elegans	0	7.12	0	1	1	2	0	0	0	0	0	0	1	0	0
513	TRINITY_DN316932_c1_g1	-3.34620250243516	9.89515533964298	20.6804858298974	0.000143328688776408	0.00168670072913682	F4JKH6	TRINITY_DN316932_c1_g1_i3	1.6e-24	Protein TSS (TPR-domain suppressor of STIMPY)	cell cycle [GO:0007049]; multicellular organism development [GO:0007275]; response to abscisic acid [GO:0009737]	cytoplasm [GO:0005737]		GO:0005737; GO:0007049; GO:0007275; GO:0009737	reviewed	Arabidopsis thaliana (Mouse-ear cress)	576	595.13	389	163	52	130.11	226.42	3201.8	2291.16	2487.58	1176.21	823.44	1320	1071.45	1152
514	TRINITY_DN316936_c5_g1	-3.93819559052346	6.05023163467898	9.87463257662787	0.00455931882859366	0.0299598551475528	Q9Y3A4	TRINITY_DN316936_c5_g1_i1	7.4e-09	Ribosomal RNA-processing protein 7 homolog A (Gastric cancer antigen Zg14)	blastocyst formation [GO:0001825]; ribosomal small subunit assembly [GO:0000028]; rRNA processing [GO:0006364]	CURI complex [GO:0032545]; cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; UTP-C complex [GO:0034456]	RNA binding [GO:0003723]	GO:0000028; GO:0001825; GO:0003723; GO:0005654; GO:0005737; GO:0006364; GO:0032545; GO:0034456	reviewed	Homo sapiens (Human)	25	32	19	15	9	9	11	138	119	170	52	84	109	125	113
515	TRINITY_DN316951_c1_g2	21.7058923192104	9.76177123949797	368.715122079626	1.137054017746e-15	7.03836436984776e-13	Q8L9C4	TRINITY_DN316951_c1_g2_i1	1.4e-40	Very-long-chain 3-oxoacyl-CoA reductase 1 (EC 1.1.1.330) (Beta-ketoacyl reductase 1) (AtKCR1) (Protein GLOSSY 8) (gl8At)	embryo development ending in seed dormancy [GO:0009793]; very long-chain fatty acid biosynthetic process [GO:0042761]	endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]	3-oxo-arachidoyl-CoA reductase activity [GO:0102339]; 3-oxo-behenoyl-CoA reductase activity [GO:0102340]; 3-oxo-cerotoyl-CoA reductase activity [GO:0102342]; 3-oxo-lignoceroyl-CoA reductase activity [GO:0102341]; acetoacetyl-CoA reductase activity [GO:0018454]; ketoreductase activity [GO:0045703]	GO:0005783; GO:0005789; GO:0009793; GO:0016020; GO:0016021; GO:0018454; GO:0042761; GO:0045703; GO:0102339; GO:0102340; GO:0102341; GO:0102342	reviewed	Arabidopsis thaliana (Mouse-ear cress)	1601	1113	1023	918	1383	1226.88	934	0	0	1	2	1	1	2	1
516	TRINITY_DN316973_c2_g1	6.0475057751212	8.0143352640158	13.3021340979882	0.00134271222825633	0.0111345269361167	O49255	TRINITY_DN316973_c2_g1_i1	3e-09	NAC transcription factor 29 (AtNAC029) (Protein NAC-LIKE, ACTIVATED BY AP3/PI) (AtNAP)	embryo development ending in seed dormancy [GO:0009793]; flower development [GO:0009908]; fruit ripening [GO:0009835]; leaf senescence [GO:0010150]; multidimensional cell growth [GO:0009825]	nucleus [GO:0005634]	DNA binding [GO:0003677]; DNA-binding transcription factor activity [GO:0003700]	GO:0003677; GO:0003700; GO:0005634; GO:0009793; GO:0009825; GO:0009835; GO:0009908; GO:0010150	reviewed	Arabidopsis thaliana (Mouse-ear cress)	205	540	63	706	621	272	66	127	4	69	0	22	70	2	207
517	TRINITY_DN316974_c2_g2	-6.39100729833538	14.8710549962346	30.7824384160208	1.20437261141697e-05	0.00018183088938222	O22433	TRINITY_DN316974_c2_g2_i3	7e-06	Metallothionein-like protein 3 (MT-3)	cellular copper ion homeostasis [GO:0006878]	cell [GO:0005623]	copper ion binding [GO:0005507]; zinc ion binding [GO:0008270]	GO:0005507; GO:0005623; GO:0006878; GO:0008270	reviewed	Arabidopsis thaliana (Mouse-ear cress)	8717	3910	4966	1526	376	3114	1662	82568	105839	90512	55641	56319	19769	33523	30822
518	TRINITY_DN316991_c4_g1	7.11525691006484	12.352595677977	111.707996300219	2.62196416437374e-10	8.03463276112546e-09	Q9C5D0	TRINITY_DN316991_c4_g1_i2	6e-06	CBS domain-containing protein CBSX2, chloroplastic (CBS domain-containing protein 1) (AtCDCP1) (Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1) (AtLEJ1)	cell redox homeostasis [GO:0045454]	chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]		GO:0009507; GO:0009570; GO:0045454	reviewed	Arabidopsis thaliana (Mouse-ear cress)	3222.52	8104.41	4964.2	7892	8078	4751.05	9744.98	1052.08	727.72	856.99	544	769	1495.92	908.08	1078
519	TRINITY_DN316993_c2_g1	5.2284133457982	6.13591269171139	13.0329198747337	0.00147069304677176	0.0119469684508099	C6A4R7	TRINITY_DN316993_c2_g1_i7	3.1e-16	Elongation factor 1-alpha (EF-1-alpha) (Elongation factor Tu) (EF-Tu)		cytoplasm [GO:0005737]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; translation elongation factor activity [GO:0003746]	GO:0003746; GO:0003924; GO:0005525; GO:0005737	reviewed	Thermococcus sibiricus (strain MM 739 / DSM 12597)	180	215	180.66	8.96	5	17	28.13	65.74	11.39	61.38	11	2	10	4	14
520	TRINITY_DN317243_c9_g4	5.45210493627443	9.10941309798985	57.4948233800183	1.05276027790892e-07	2.24709866215731e-06	P11369	TRINITY_DN317243_c9_g4_i3	4.5e-36	LINE-1 retrotransposable element ORF2 protein (ORF2p) (Long interspersed element-1) (L1) (Retrovirus-related Pol polyprotein LINE-1) [Includes: Reverse transcriptase (EC 2.7.7.49); Endonuclease (EC 3.1.21.-)]	DNA recombination [GO:0006310]		endonuclease activity [GO:0004519]; metal ion binding [GO:0046872]; RNA-directed DNA polymerase activity [GO:0003964]	GO:0003964; GO:0004519; GO:0006310; GO:0046872	reviewed	Mus musculus (Mouse)	139.87	947.33	337.19	636.97	1601.89	346.52	1072.74	171.53	123.67	111.97	91.01	155.84	252.84	230.28	90.11
521	TRINITY_DN317261_c4_g1	3.09742245173074	10.8162306052159	13.4939142933739	0.00125898592283762	0.0105884821499523	Q9LIE6	TRINITY_DN317261_c4_g1_i1	7.6e-06	VQ motif-containing protein 22 (AtVQ22)		nucleus [GO:0005634]		GO:0005634	reviewed	Arabidopsis thaliana (Mouse-ear cress)	518	702	133	2402	3180	1199	5283	943	808	2161	1400	149	433	660	58
522	TRINITY_DN317261_c5_g1	4.1813490085786	10.5268671209954	28.9371502781707	1.82129972877799e-05	0.000258574433971003	Q7LHG5	TRINITY_DN317261_c5_g1_i1	2.5e-37	Transposon Ty3-I Gag-Pol polyprotein (Gag3-Pol3) (Transposon Ty3-2 TYA-TYB polyprotein) [Cleaved into: Capsid protein (CA) (p24); Spacer peptide p3; Nucleocapsid protein p11 (NC); Ty3 protease (PR) (EC 3.4.23.-) (p16); Spacer peptide J; Reverse transcriptase/ribonuclease H (RT) (RT-RH) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) (p55); Integrase p52 (IN); Integrase p49 (IN)]	DNA integration [GO:0015074]; DNA recombination [GO:0006310]; transposition, RNA-mediated [GO:0032197]	cytoplasm [GO:0005737]; nucleus [GO:0005634]; retrotransposon nucleocapsid [GO:0000943]	aspartic-type endopeptidase activity [GO:0004190]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; peptidase activity [GO:0008233]; ribonuclease activity [GO:0004540]; RNA binding [GO:0003723]; RNA-directed DNA polymerase activity [GO:0003964]; RNA-DNA hybrid ribonuclease activity [GO:0004523]; zinc ion binding [GO:0008270]	GO:0000943; GO:0003677; GO:0003723; GO:0003887; GO:0003964; GO:0004190; GO:0004523; GO:0004540; GO:0005524; GO:0005634; GO:0005737; GO:0006310; GO:0008233; GO:0008270; GO:0015074; GO:0032197	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	1521.17	1223	1518.61	1853.94	2194.78	805	2186	469.24	552	1065.86	395.14	880	737.05	956.15	138
523	TRINITY_DN317263_c4_g2	-3.28037554486596	8.60304211406866	17.0904357195457	0.000402137503285377	0.0040019793333384	P14381	TRINITY_DN317263_c4_g2_i2	1.4e-27	Transposon TX1 uncharacterized 149 kDa protein (ORF 2)					reviewed	Xenopus laevis (African clawed frog)	88	156	104	124	90.99	103	163	1161.15	442	365	656.14	461.02	406	1013.42	601.13
524	TRINITY_DN318563_c0_g1	19.7556548109639	8.76274688485037	200.869713038335	7.29584000633265e-13	4.03225443207135e-11	Q9C9S4	TRINITY_DN318563_c0_g1_i1	3.2e-33	Trehalose-phosphate phosphatase B (AtTPPB) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase)	trehalose biosynthetic process [GO:0005992]		trehalose-phosphatase activity [GO:0004805]	GO:0004805; GO:0005992	reviewed	Arabidopsis thaliana (Mouse-ear cress)	516	492	271	889	885	714	362	2	0	0	1	0	0	4	0
525	TRINITY_DN34409_c0_g1	8.36612758565182	1.72859817470805	9.7397141512937	0.00620941420744245	0.0382831413785545	Q176V0	TRINITY_DN34409_c0_g1_i1	3.6e-21	Ubiquitin-fold modifier 1	protein ufmylation [GO:0071569]			GO:0071569	reviewed	Aedes aegypti (Yellowfever mosquito) (Culex aegypti)	0	0	2	0	2	6	0	0	0	0	0	0	0	0	0
526	TRINITY_DN3463_c0_g1	7.87929349663646	1.61684078863861	12.0138245727553	0.00294655671223725	0.0215593215706248	Q5ZJF4	TRINITY_DN3463_c0_g1_i1	6e-59	Peroxiredoxin-6 (EC 1.11.1.15) (1-Cys peroxiredoxin) (1-Cys PRX) (Acidic calcium-independent phospholipase A2) (aiPLA2) (EC 3.1.1.4) (Non-selenium glutathione peroxidase) (NSGPx)	cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; hydrogen peroxide catabolic process [GO:0042744]; lipid catabolic process [GO:0016042]	cytosol [GO:0005829]; extracellular space [GO:0005615]; lysosome [GO:0005764]	peroxidase activity [GO:0004601]; peroxiredoxin activity [GO:0051920]; phospholipase A2 activity [GO:0004623]; phospholipase A2 activity (consuming 1,2-dipalmitoylphosphatidylcholine) [GO:0102567]; phospholipase A2 activity consuming 1,2-dioleoylphosphatidylethanolamine) [GO:0102568]	GO:0004601; GO:0004623; GO:0005615; GO:0005764; GO:0005829; GO:0016042; GO:0034599; GO:0042744; GO:0045454; GO:0051920; GO:0102567; GO:0102568	reviewed	Gallus gallus (Chicken)	0	4	0	2	6	1	0	0	0	0	0	0	0	0	0
527	TRINITY_DN3495_c0_g1	19.9600472367076	5.96870883364142	89.896931822948	3.30451746979641e-08	8.11704886430149e-07	P17609	TRINITY_DN3495_c0_g1_i1	2.9e-23	GTP-binding protein ypt2 (SEC4 homolog)	exocytosis [GO:0006887]; Golgi to plasma membrane transport [GO:0006893]; intracellular protein transport [GO:0006886]; protein localization to plasma membrane [GO:0072659]; protein secretion [GO:0009306]; Rab protein signal transduction [GO:0032482]; regulation of exocytosis [GO:0017157]; signaling [GO:0023052]; vesicle docking involved in exocytosis [GO:0006904]; vesicle fusion [GO:0006906]	cytosol [GO:0005829]; endosome [GO:0005768]; meiotic spindle pole body [GO:0035974]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; prospore membrane [GO:0005628]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]	GO:0003924; GO:0005525; GO:0005628; GO:0005634; GO:0005768; GO:0005829; GO:0005886; GO:0006886; GO:0006887; GO:0006893; GO:0006904; GO:0006906; GO:0009306; GO:0017157; GO:0023052; GO:0032482; GO:0035974; GO:0072659	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)	95	95	116	92	74	77	31	0	0	0	0	0	0	0	0
528	TRINITY_DN371660_c0_g1	6.03517952506738	1.31817049025397	9.67395264888764	0.00635163487165366	0.0389273463916199	Q852L0	TRINITY_DN371660_c0_g1_i1	1.1e-10	Casein kinase 1-like protein HD16 (EC 2.7.11.1) (Os03g0793500 protein) (Protein EARLY FLOWERING 1) (Protein HEADING DATE 16)	endocytosis [GO:0006897]; flower development [GO:0009908]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin mediated signaling pathway [GO:0010476]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107]; regulation of growth [GO:0040008]; regulation of long-day photoperiodism, flowering [GO:0048586]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005524; GO:0005634; GO:0005737; GO:0006897; GO:0009740; GO:0009908; GO:0010476; GO:0018105; GO:0018107; GO:0040008; GO:0048586	reviewed	Oryza sativa subsp. japonica (Rice)	0	1	1	1	2	0	0	0	0	0	0	0	0	0	0
529	TRINITY_DN38592_c0_g1	-8.95634970143521	3.12011810738283	14.6626935483849	0.000857328044207483	0.00769110230962945	Q9FZ45	TRINITY_DN38592_c0_g1_i1	1.2e-176	Uncharacterized membrane protein At1g16860	negative regulation of cellulose biosynthetic process [GO:2001007]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]		GO:0005886; GO:0016021; GO:2001007	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	1	0	0	0	1	0	16	16	15	14	10	13	15	9
530	TRINITY_DN45784_c0_g1	10.0074037273555	2.0999088600841	17.7173366327712	0.00058762820173839	0.00554484537920829	Q54JM9	TRINITY_DN45784_c0_g1_i1	9.5e-34	Nitrilase homolog 2 (EC 3.5.-.-)	asparagine metabolic process [GO:0006528]; glutamine metabolic process [GO:0006541]; oxaloacetate metabolic process [GO:0006107]		omega-amidase activity [GO:0050152]	GO:0006107; GO:0006528; GO:0006541; GO:0050152	reviewed	Dictyostelium discoideum (Slime mold)	2	5	0	4	7	5	1	0	0	0	0	0	0	0	0
531	TRINITY_DN46127_c0_g1	8.14274602726073	1.66289252258366	9.69298101949023	0.00631010820542639	0.0387495732059418	A2VDN6	TRINITY_DN46127_c0_g1_i1	1e-15	Splicing factor 3A subunit 1	mRNA splicing, via spliceosome [GO:0000398]; U2-type prespliceosome assembly [GO:1903241]	catalytic step 2 spliceosome [GO:0071013]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; U2 snRNP [GO:0005686]; U2-type precatalytic spliceosome [GO:0071005]; U2-type prespliceosome [GO:0071004]; U2-type spliceosomal complex [GO:0005684]	RNA binding [GO:0003723]	GO:0000398; GO:0003723; GO:0005634; GO:0005684; GO:0005686; GO:0016607; GO:0071004; GO:0071005; GO:0071013; GO:1903241	reviewed	Bos taurus (Bovine)	0	0	2	0	2	5	0	0	0	0	0	0	0	0	0
532	TRINITY_DN4638_c0_g1	10.839188046781	2.18069310398148	19.2075841376614	0.000404386662227107	0.00401146384484903	Q9SAB1	TRINITY_DN4638_c0_g1_i1	9.9e-89	Heat shock 70 kDa protein 16 (Heat shock protein 70-16) (AtHsp70-16)		cytosol [GO:0005829]; nucleus [GO:0005634]	ATP binding [GO:0005524]	GO:0005524; GO:0005634; GO:0005829	reviewed	Arabidopsis thaliana (Mouse-ear cress)	1	12	4	3	10	0	2	0	0	0	0	0	0	0	0
533	TRINITY_DN524499_c0_g1	-6.85834649206712	5.14998161697359	14.3845642894587	0.000938253125451414	0.00832061152800036	Q9M5L0	TRINITY_DN524499_c0_g1_i1	6e-50	60S ribosomal protein L35	translation [GO:0006412]	ribosome [GO:0005840]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005840; GO:0006412	reviewed	Euphorbia esula (Leafy spurge)	8	4	3	3	0	4	1	72	77	60	69	40	42	102	61
534	TRINITY_DN544815_c0_g1	8.57813914617691	1.67019532741007	12.5306985956526	0.00251068128140852	0.0188764861797538	O14735	TRINITY_DN544815_c0_g1_i1	6.1e-28	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (EC 2.7.8.11) (Phosphatidylinositol synthase) (PI synthase) (PtdIns synthase)	CDP-diacylglycerol metabolic process [GO:0046341]; phosphatidylinositol biosynthetic process [GO:0006661]	endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]	alcohol binding [GO:0043178]; carbohydrate binding [GO:0030246]; CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity [GO:0003881]; diacylglycerol binding [GO:0019992]; manganese ion binding [GO:0030145]	GO:0000139; GO:0003881; GO:0005789; GO:0005794; GO:0005886; GO:0006661; GO:0016020; GO:0016021; GO:0019992; GO:0030145; GO:0030246; GO:0043178; GO:0046341	reviewed	Homo sapiens (Human)	4	0	3	0	2	0	2	0	0	0	0	0	0	0	0
535	TRINITY_DN546034_c0_g1	-8.77239738630685	1.85556611721595	8.66016372443196	0.00868929848322556	0.0498025533436724	Q940B0	TRINITY_DN546034_c0_g1_i1	5.4e-58	60S ribosomal protein L18-3	translation [GO:0006412]	cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; plasmodesma [GO:0009506]; vacuole [GO:0005773]	mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]	GO:0003729; GO:0003735; GO:0005773; GO:0005829; GO:0006412; GO:0009506; GO:0016020; GO:0022625; GO:0022626	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	0	0	0	0	0	3	0	6	1	0	6	0	9
536	TRINITY_DN553854_c0_g1	-8.2006361490926	1.76892549600013	10.6787065084786	0.00426645143530987	0.0283971337468474	Q9LJD8	TRINITY_DN553854_c0_g1_i1	1.4e-21	MAP3K epsilon protein kinase 1 (AtM3KE1) (EC 2.7.11.1) (Mitogen-activated protein kinase kinase kinase 7)	activation of protein kinase activity [GO:0032147]; cell cycle [GO:0007049]; cell division [GO:0051301]; protein autophosphorylation [GO:0046777]; regulation of cell division [GO:0051302]; regulation of embryonic development [GO:0045995]; regulation of extent of cell growth [GO:0061387]; regulation of unidimensional cell growth [GO:0051510]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; microtubule organizing center [GO:0005815]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]	ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005524; GO:0005730; GO:0005737; GO:0005815; GO:0005829; GO:0005886; GO:0007049; GO:0023014; GO:0031098; GO:0032147; GO:0045995; GO:0046777; GO:0051301; GO:0051302; GO:0051510; GO:0061387	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	0	0	0	0	0	2	6	4	5	2	2	1	0
537	TRINITY_DN6259_c0_g1	8.63913650213097	1.82199417481445	11.7639435675334	0.00318736473142025	0.0228354024160779	Q5L8L7	TRINITY_DN6259_c0_g1_i2	4.7e-59	ATP-dependent Clp protease ATP-binding subunit ClpX	protein folding [GO:0006457]		ATP binding [GO:0005524]; protein dimerization activity [GO:0046983]; unfolded protein binding [GO:0051082]; zinc ion binding [GO:0008270]	GO:0005524; GO:0006457; GO:0008270; GO:0046983; GO:0051082	reviewed	Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)	2	19	0	0	0	1	1	0	0	0	0	0	0	0	0
538	TRINITY_DN6371_c0_g1	-8.21430445133469	1.71111043384873	11.8560921277397	0.00289373138625086	0.0213240443820153	Q7XZF5	TRINITY_DN6371_c0_g1_i1	2.5e-38	Protein RST1 (Protein RESURRECTION 1)	alkane biosynthetic process [GO:0043447]; cuticle hydrocarbon biosynthetic process [GO:0006723]; defense response [GO:0006952]; embryo development ending in seed dormancy [GO:0009793]; lipid metabolic process [GO:0006629]; seed development [GO:0048316]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]		GO:0005886; GO:0006629; GO:0006723; GO:0006952; GO:0009793; GO:0016021; GO:0043447; GO:0048316	reviewed	Arabidopsis thaliana (Mouse-ear cress)	0	0	0	0	0	0	0	3	1	4	2	1	1	6	2
539	TRINITY_DN643084_c0_g1	-8.22662094328197	1.76454376020032	11.7000195998508	0.00304343306183017	0.0219567023924577	Q5ZKD5	TRINITY_DN643084_c0_g1_i1	1.1e-30	RRP12-like protein		integral component of membrane [GO:0016021]; nuclear membrane [GO:0031965]; nucleolus [GO:0005730]		GO:0005730; GO:0016021; GO:0031965	reviewed	Gallus gallus (Chicken)	0	0	0	0	0	0	0	4	8	2	3	2	1	1	1
540	TRINITY_DN680_c0_g1	7.79906055231146	1.54575805090022	11.9632585329571	0.00299358546120113	0.0218517617981544	A5V5P9	TRINITY_DN680_c0_g1_i2	2e-48	Chaperone protein DnaK (HSP70) (Heat shock 70 kDa protein) (Heat shock protein 70)	protein folding [GO:0006457]		ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]	GO:0005524; GO:0006457; GO:0051082	reviewed	Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)	0	6	2	0	2	1	0	0	0	0	0	0	0	0	0