GeneID	logFC	logCPM	F	PValue	FDR	Accession	Isoform	E-value	ProteinN	GO_BP	GO_CC	GO_MF	GO	Status	Organism
TRINITY_DN102431_c0_g1	7.879689421	1.594841252	9.62074707	0.006469395	0.039492659	Q7ZX51	TRINITY_DN102431_c0_g1_i1	1.40E-40	"Tyrosine--tRNA ligase, cytoplasmic (EC 6.1.1.1) (Tyrosyl-tRNA synthetase) (TyrRS)"	tyrosyl-tRNA aminoacylation [GO:0006437]	cytoplasm [GO:0005737]	ATP binding [GO:0005524]; tRNA binding [GO:0000049]; tyrosine-tRNA ligase activity [GO:0004831]	GO:0000049; GO:0004831; GO:0005524; GO:0005737; GO:0006437	reviewed	Xenopus laevis (African clawed frog)
TRINITY_DN104822_c0_g1	7.26461096	1.860002248	8.55833467	0.00835486	0.048514619	Q69LE0	TRINITY_DN104822_c0_g1_i1	7.20E-13	Zinc finger A20 and AN1 domain-containing stress-associated protein 10 (OsSAP10)			DNA binding [GO:0003677]; zinc ion binding [GO:0008270]	GO:0003677; GO:0008270	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN111410_c0_g1	15.91333152	4.656098151	44.69808575	3.80E-06	6.35E-05	Q9W020	TRINITY_DN111410_c0_g1_i1	7.30E-08	Nucleolar MIF4G domain-containing protein 1 homolog	ribosomal small subunit biogenesis [GO:0042274]	nucleolus [GO:0005730]	RNA binding [GO:0003723]	GO:0003723; GO:0005730; GO:0042274	reviewed	Drosophila melanogaster (Fruit fly)
TRINITY_DN111543_c0_g1	8.141234473	2.263419779	10.39701348	0.004969218	0.031935814	O65202	TRINITY_DN111543_c0_g1_i1	4.30E-10	Peroxisomal acyl-coenzyme A oxidase 1 (AOX 1) (EC 1.3.3.6) (Long-chain acyl-CoA oxidase) (AtCX1)	fatty acid beta-oxidation [GO:0006635]; fatty acid beta-oxidation using acyl-CoA oxidase [GO:0033540]; jasmonic acid biosynthetic process [GO:0009695]; lipid homeostasis [GO:0055088]; long-chain fatty acid metabolic process [GO:0001676]; response to cadmium ion [GO:0046686]; response to fungus [GO:0009620]; response to wounding [GO:0009611]	peroxisome [GO:0005777]; plasmodesma [GO:0009506]	acyl-CoA oxidase activity [GO:0003997]; FAD binding [GO:0071949]; fatty acid binding [GO:0005504]; flavin adenine dinucleotide binding [GO:0050660]	GO:0001676; GO:0003997; GO:0005504; GO:0005777; GO:0006635; GO:0009506; GO:0009611; GO:0009620; GO:0009695; GO:0033540; GO:0046686; GO:0050660; GO:0055088; GO:0071949	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN111591_c0_g1	6.205884474	1.383822523	9.467356654	0.00682293	0.041244076	O67876	TRINITY_DN111591_c0_g1_i1	1.10E-41	Delta-aminolevulinic acid dehydratase (ALAD) (ALADH) (EC 4.2.1.24) (Porphobilinogen synthase)	heme biosynthetic process [GO:0006783]; protoporphyrinogen IX biosynthetic process [GO:0006782]	cytosol [GO:0005829]	porphobilinogen synthase activity [GO:0004655]; zinc ion binding [GO:0008270]	GO:0004655; GO:0005829; GO:0006782; GO:0006783; GO:0008270	reviewed	Aquifex aeolicus (strain VF5)
TRINITY_DN139711_c0_g1	7.930132876	1.615139546	11.00029338	0.004072252	0.027399172	P21187	TRINITY_DN139711_c0_g1_i1	1.50E-24	Polyadenylate-binding protein (PABP) (Poly(A)-binding protein)	"chemical synaptic transmission [GO:0007268]; dorsal/ventral pattern formation [GO:0009953]; male meiosis cytokinesis [GO:0007112]; male meiotic nuclear division [GO:0007140]; mRNA splicing, via spliceosome [GO:0000398]; negative regulation of neuron death [GO:1901215]; oocyte development [GO:0048599]; oogenesis [GO:0048477]; positive regulation of translation [GO:0045727]; regulation of compound eye photoreceptor development [GO:0045314]; spermatid nucleus differentiation [GO:0007289]; spermatogenesis [GO:0007283]"	catalytic step 2 spliceosome [GO:0071013]; cytoplasm [GO:0005737]; cytoplasmic stress granule [GO:0010494]; cytosol [GO:0005829]; nucleus [GO:0005634]; precatalytic spliceosome [GO:0071011]; ribonucleoprotein complex [GO:1990904]	mRNA 3'-UTR binding [GO:0003730]; mRNA binding [GO:0003729]; poly(A) binding [GO:0008143]; poly(U) RNA binding [GO:0008266]; RNA binding [GO:0003723]	GO:0000398; GO:0003723; GO:0003729; GO:0003730; GO:0005634; GO:0005737; GO:0005829; GO:0007112; GO:0007140; GO:0007268; GO:0007283; GO:0007289; GO:0008143; GO:0008266; GO:0009953; GO:0010494; GO:0045314; GO:0045727; GO:0048477; GO:0048599; GO:0071011; GO:0071013; GO:1901215; GO:1990904	reviewed	Drosophila melanogaster (Fruit fly)
TRINITY_DN151645_c0_g1	7.521405631	2.001550158	9.40084266	0.006087836	0.037683705	Q9NP78	TRINITY_DN151645_c0_g1_i1	1.70E-21	ATP-binding cassette sub-family B member 9 (ATP-binding cassette transporter 9) (ABC transporter 9 protein) (hABCB9) (TAP-like protein) (TAPL)	peptide transport [GO:0015833]; protein transport [GO:0015031]; transmembrane transport [GO:0055085]	integral component of endoplasmic reticulum membrane [GO:0030176]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; lysosomal membrane [GO:0005765]; lysosome [GO:0005764]	ATPase activity [GO:0016887]; ATPase-coupled peptide transmembrane transporter activity [GO:0015440]; ATPase-coupled transmembrane transporter activity [GO:0042626]; ATP binding [GO:0005524]; protein homodimerization activity [GO:0042803]; transmembrane transporter activity [GO:0022857]	GO:0005524; GO:0005764; GO:0005765; GO:0015031; GO:0015440; GO:0015833; GO:0016021; GO:0016887; GO:0022857; GO:0030176; GO:0042626; GO:0042803; GO:0043231; GO:0055085	reviewed	Homo sapiens (Human)
TRINITY_DN151688_c0_g1	8.348707376	1.729947773	9.957178112	0.005764086	0.03601293	P56701	TRINITY_DN151688_c0_g1_i1	2.30E-53	26S proteasome non-ATPase regulatory subunit 2 (26S proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) (Tumor necrosis factor type 1 receptor-associated protein 2)	proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; regulation of protein catabolic process [GO:0042176]	"nucleus [GO:0005634]; proteasome accessory complex [GO:0022624]; proteasome regulatory particle, base subcomplex [GO:0008540]; proteasome storage granule [GO:0034515]"	enzyme regulator activity [GO:0030234]	GO:0005634; GO:0008540; GO:0022624; GO:0030234; GO:0034515; GO:0042176; GO:0043161	reviewed	Bos taurus (Bovine)
TRINITY_DN151705_c0_g1	10.12471787	2.111142469	11.56475941	0.003395236	0.023787276	Q9D1Q6	TRINITY_DN151705_c0_g1_i1	8.00E-55	Endoplasmic reticulum resident protein 44 (ER protein 44) (ERp44) (Thioredoxin domain-containing protein 4)	cell redox homeostasis [GO:0045454]; glycoprotein metabolic process [GO:0009100]; protein folding [GO:0006457]; response to endoplasmic reticulum stress [GO:0034976]; response to unfolded protein [GO:0006986]	cell surface [GO:0009986]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; endoplasmic reticulum lumen [GO:0005788]; endoplasmic reticulum membrane [GO:0005789]	protein disulfide isomerase activity [GO:0003756]	GO:0003756; GO:0005788; GO:0005789; GO:0005793; GO:0006457; GO:0006986; GO:0009100; GO:0009986; GO:0034976; GO:0045454	reviewed	Mus musculus (Mouse)
TRINITY_DN172833_c0_g1	-12.53788475	3.079814322	17.40242837	0.000571331	0.005407552	O49561	TRINITY_DN172833_c0_g1_i1	7.60E-72	Gibberellin 2-beta-dioxygenase 8 (EC 1.14.11.13) (GA 2-oxidase 8) (Gibberellin 2-beta-hydroxylase 8) (Gibberellin 2-oxidase 8)	gibberellin biosynthetic process [GO:0009686]; gibberellin metabolic process [GO:0009685]		C-20 gibberellin 2-beta-dioxygenase activity [GO:0052635]; dioxygenase activity [GO:0051213]; metal ion binding [GO:0046872]	GO:0009685; GO:0009686; GO:0046872; GO:0051213; GO:0052635	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN172940_c0_g1	9.134569882	1.84225531	10.60346497	0.004639334	0.030292695	Q5I0P2	TRINITY_DN172940_c0_g1_i1	1.00E-38	"Glycine cleavage system H protein, mitochondrial (Lipoic acid-containing protein)"	glycine decarboxylation via glycine cleavage system [GO:0019464]; protein lipoylation [GO:0009249]	glycine cleavage complex [GO:0005960]; mitochondrion [GO:0005739]	aminomethyltransferase activity [GO:0004047]; enzyme binding [GO:0019899]	GO:0004047; GO:0005739; GO:0005960; GO:0009249; GO:0019464; GO:0019899	reviewed	Rattus norvegicus (Rat)
TRINITY_DN175296_c0_g1	6.812930831	8.111250344	66.48563787	3.06E-08	7.63E-07	P29057	TRINITY_DN175296_c0_g1_i1	4.60E-64	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (EC 1.1.1.34)	coenzyme A metabolic process [GO:0015936]; isoprenoid biosynthetic process [GO:0008299]	endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; mitochondrial membrane [GO:0031966]; plastid membrane [GO:0042170]	coenzyme binding [GO:0050662]; hydroxymethylglutaryl-CoA reductase (NADPH) activity [GO:0004420]	GO:0004420; GO:0005789; GO:0008299; GO:0015936; GO:0016021; GO:0031966; GO:0042170; GO:0050662	reviewed	Hevea brasiliensis (Para rubber tree) (Siphonia brasiliensis)
TRINITY_DN2119_c1_g1	10.97418726	2.214686917	19.60043684	0.000367456	0.003716585	Q8GWR0	TRINITY_DN2119_c1_g1_i1	1.40E-39	"Cytochrome c oxidase assembly protein COX11, mitochondrial"	pollen germination [GO:0009846]; positive regulation of cytochrome-c oxidase activity [GO:1904960]; post-embryonic root morphogenesis [GO:0010101]	integral component of mitochondrial membrane [GO:0032592]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]	copper ion binding [GO:0005507]; protein self-association [GO:0043621]	GO:0005507; GO:0005739; GO:0005743; GO:0009846; GO:0010101; GO:0032592; GO:0043621; GO:1904960	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN22035_c0_g1	7.098861686	1.527540731	9.650999666	0.006402138	0.039159319	O42899	TRINITY_DN22035_c0_g1_i1	5.00E-34	Protein sco1	cellular copper ion homeostasis [GO:0006878]; copper ion transport [GO:0006825]; mitochondrial respiratory chain complex IV assembly [GO:0033617]	mitochondrial inner membrane [GO:0005743]	copper chaperone activity [GO:0016531]	GO:0005743; GO:0006825; GO:0006878; GO:0016531; GO:0033617	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN223640_c0_g1	-9.412955251	1.997297604	11.70679459	0.003036758	0.021956702	P74327	TRINITY_DN223640_c0_g1_i1	8.30E-16	Mini-ribonuclease 3 (Mini-3) (Mini-RNase 3) (EC 3.1.26.-) (Mini-RNase III) (Mini-III)	rRNA processing [GO:0006364]	cytoplasm [GO:0005737]	ribonuclease III activity [GO:0004525]; rRNA binding [GO:0019843]	GO:0004525; GO:0005737; GO:0006364; GO:0019843	reviewed	Synechocystis sp. (strain PCC 6803 / Kazusa)
TRINITY_DN223644_c0_g1	20.69243682	7.453467239	170.7888035	2.90E-11	1.06E-09	Q9P783	TRINITY_DN223644_c0_g1_i1	4.90E-38	Ribosome assembly protein rrb1	ribosome biogenesis [GO:0042254]; rRNA processing [GO:0006364]	cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]		GO:0005634; GO:0005730; GO:0005829; GO:0006364; GO:0042254	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN223830_c0_g1	-10.25421077	6.698303266	30.17291262	1.38E-05	0.0002051	Q38885	TRINITY_DN223830_c0_g1_i1	2.10E-92	"Preprotein translocase subunit SCY1, chloroplastic (CpSecY)"	"SRP-dependent cotranslational protein targeting to membrane, translocation [GO:0006616]; thylakoid membrane organization [GO:0010027]"	chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]	protein transmembrane transporter activity [GO:0008320]; signal sequence binding [GO:0005048]	GO:0005048; GO:0006616; GO:0008320; GO:0009507; GO:0009535; GO:0010027; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN226183_c0_g1	21.57003222	8.167007166	218.9342458	2.97E-13	1.84E-11	Q54EW1	TRINITY_DN226183_c0_g1_i2	1.20E-158	Serine hydroxymethyltransferase 2 (SHMT 2) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 2) (Serine methylase 2)	cellular response to tetrahydrofolate [GO:1904482]; folic acid metabolic process [GO:0046655]; glycine biosynthetic process from serine [GO:0019264]; glycine metabolic process [GO:0006544]; L-serine catabolic process [GO:0006565]; one-carbon metabolic process [GO:0006730]; tetrahydrofolate interconversion [GO:0035999]; tetrahydrofolate metabolic process [GO:0046653]	mitochondrial matrix [GO:0005759]	amino acid binding [GO:0016597]; cobalt ion binding [GO:0050897]; glycine hydroxymethyltransferase activity [GO:0004372]; pyridoxal phosphate binding [GO:0030170]; serine binding [GO:0070905]; zinc ion binding [GO:0008270]	GO:0004372; GO:0005759; GO:0006544; GO:0006565; GO:0006730; GO:0008270; GO:0016597; GO:0019264; GO:0030170; GO:0035999; GO:0046653; GO:0046655; GO:0050897; GO:0070905; GO:1904482	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN226613_c0_g1	8.268831521	1.903304938	11.77702421	0.002635907	0.019610898	P00505	TRINITY_DN226613_c0_g1_i1	5.60E-92	"Aspartate aminotransferase, mitochondrial (mAspAT) (EC 2.6.1.1) (EC 2.6.1.7) (Fatty acid-binding protein) (FABP-1) (Glutamate oxaloacetate transaminase 2) (Kynurenine aminotransferase 4) (Kynurenine aminotransferase IV) (Kynurenine--oxoglutarate transaminase 4) (Kynurenine--oxoglutarate transaminase IV) (Plasma membrane-associated fatty acid-binding protein) (FABPpm) (Transaminase A)"	2-oxoglutarate metabolic process [GO:0006103]; 4-hydroxyproline catabolic process [GO:0019470]; aspartate biosynthetic process [GO:0006532]; aspartate catabolic process [GO:0006533]; aspartate metabolic process [GO:0006531]; cellular amino acid biosynthetic process [GO:0008652]; fatty acid transport [GO:0015908]; female pregnancy [GO:0007565]; gluconeogenesis [GO:0006094]; glutamate catabolic process to 2-oxoglutarate [GO:0019551]; glutamate catabolic process to aspartate [GO:0019550]; glutamate metabolic process [GO:0006536]; glyoxylate metabolic process [GO:0046487]; lactation [GO:0007595]; oxaloacetate metabolic process [GO:0006107]; response to ethanol [GO:0045471]; response to insulin [GO:0032868]; response to morphine [GO:0043278]; response to muscle activity [GO:0014850]	cell surface [GO:0009986]; extracellular exosome [GO:0070062]; mitochondrial inner membrane [GO:0005743]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; perikaryon [GO:0043204]; plasma membrane [GO:0005886]; protein-containing complex [GO:0032991]; T-tubule [GO:0030315]	amino acid binding [GO:0016597]; enzyme binding [GO:0019899]; kynurenine-oxoglutarate transaminase activity [GO:0016212]; L-aspartate:2-oxoglutarate aminotransferase activity [GO:0004069]; phospholipid binding [GO:0005543]; protein homodimerization activity [GO:0042803]; pyridoxal phosphate binding [GO:0030170]; RNA binding [GO:0003723]	GO:0003723; GO:0004069; GO:0005543; GO:0005739; GO:0005743; GO:0005759; GO:0005886; GO:0006094; GO:0006103; GO:0006107; GO:0006531; GO:0006532; GO:0006533; GO:0006536; GO:0007565; GO:0007595; GO:0008652; GO:0009986; GO:0014850; GO:0015908; GO:0016212; GO:0016597; GO:0019470; GO:0019550; GO:0019551; GO:0019899; GO:0030170; GO:0030315; GO:0032868; GO:0032991; GO:0042803; GO:0043204; GO:0043278; GO:0045471; GO:0046487; GO:0070062	reviewed	Homo sapiens (Human)
TRINITY_DN226664_c0_g1	5.879876934	8.413919916	28.04921286	2.23E-05	0.000311545	Q9ZVP5	TRINITY_DN226664_c0_g1_i1	7.20E-70	Mitogen-activated protein kinase kinase kinase 18 (EC 2.7.11.25)	abscisic acid-activated signaling pathway [GO:0009738]; activation of protein kinase activity [GO:0032147]; negative regulation of stomatal opening [GO:1902457]; positive regulation of abscisic acid-activated signaling pathway [GO:0009789]; positive regulation of leaf senescence [GO:1900057]; protein autophosphorylation [GO:0046777]; regulation of stomatal complex development [GO:2000038]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; MAP kinase kinase kinase activity [GO:0004709]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]	GO:0004672; GO:0004674; GO:0004709; GO:0005524; GO:0005634; GO:0005737; GO:0006970; GO:0009737; GO:0009738; GO:0009789; GO:0023014; GO:0031098; GO:0032147; GO:0046777; GO:1900057; GO:1902457; GO:2000038	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN226686_c0_g1	19.09657898	7.875067812	152.1494604	1.25E-11	4.66E-10	Q13630	TRINITY_DN226686_c0_g1_i1	2.80E-116	"GDP-L-fucose synthase (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase) (Protein FX) (Red cell NADP(H)-binding protein) (Short-chain dehydrogenase/reductase family 4E member 1)"	'de novo' GDP-L-fucose biosynthetic process [GO:0042351]; GDP-mannose metabolic process [GO:0019673]; leukocyte cell-cell adhesion [GO:0007159]; T cell mediated cytotoxicity [GO:0001913]	cytosol [GO:0005829]; extracellular exosome [GO:0070062]	"coenzyme binding [GO:0050662]; electron transfer activity [GO:0009055]; GDP-4-dehydro-D-rhamnose reductase activity [GO:0042356]; GDP-L-fucose synthase activity [GO:0050577]; GDP-mannose 3,5-epimerase activity [GO:0047918]; identical protein binding [GO:0042802]"	GO:0001913; GO:0005829; GO:0007159; GO:0009055; GO:0019673; GO:0042351; GO:0042356; GO:0042802; GO:0047918; GO:0050577; GO:0050662; GO:0070062	reviewed	Homo sapiens (Human)
TRINITY_DN226922_c0_g1	11.64871994	3.021693754	18.94145806	0.000307842	0.00322973	Q9LSG3	TRINITY_DN226922_c0_g1_i1	3.40E-08	Galacturonosyltransferase 8 (EC 2.4.1.-) (Glycosyltransferase QUASIMODO1)	cell adhesion [GO:0007155]; homogalacturonan biosynthetic process [GO:0010289]; pectin biosynthetic process [GO:0045489]	endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; trans-Golgi network [GO:0005802]	"polygalacturonate 4-alpha-galacturonosyltransferase activity [GO:0047262]; transferase activity, transferring glycosyl groups [GO:0016757]"	GO:0000139; GO:0005739; GO:0005768; GO:0005794; GO:0005802; GO:0007155; GO:0010289; GO:0016021; GO:0016757; GO:0045489; GO:0047262	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN227360_c0_g2	8.197688465	1.633907188	10.38757247	0.004984924	0.031935814	F4HZF0	TRINITY_DN227360_c0_g2_i1	2.20E-38	Kinesin-like protein KIN-14H	microtubule-based movement [GO:0007018]	kinesin complex [GO:0005871]; microtubule [GO:0005874]	ATPase activity [GO:0016887]; ATP binding [GO:0005524]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]	GO:0003777; GO:0005524; GO:0005871; GO:0005874; GO:0007018; GO:0008017; GO:0016887	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN228040_c0_g1	9.553233108	2.230654008	10.22052234	0.005272298	0.033233732	Q9BZE4	TRINITY_DN228040_c0_g1_i1	4.70E-35	Nucleolar GTP-binding protein 1 (Chronic renal failure gene protein) (GTP-binding protein NGB)	"maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; negative regulation of cell-cell adhesion [GO:0022408]; negative regulation of cell migration [GO:0030336]; negative regulation of cell population proliferation [GO:0008285]; negative regulation of collagen binding [GO:0033342]; negative regulation of DNA replication [GO:0008156]; negative regulation of protein ubiquitination [GO:0031397]; osteoblast differentiation [GO:0001649]; protein stabilization [GO:0050821]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079]"	cytoplasm [GO:0005737]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; nuclear membrane [GO:0031965]; nucleolus [GO:0005730]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; RNA binding [GO:0003723]	GO:0000079; GO:0000463; GO:0001649; GO:0003723; GO:0003924; GO:0005525; GO:0005634; GO:0005730; GO:0005737; GO:0005794; GO:0005829; GO:0008156; GO:0008285; GO:0016020; GO:0022408; GO:0030336; GO:0031397; GO:0031965; GO:0033342; GO:0048471; GO:0050821	reviewed	Homo sapiens (Human)
TRINITY_DN228042_c0_g1	-9.495679553	2.517460845	13.77578098	0.001289494	0.010757372	O80528	TRINITY_DN228042_c0_g1_i1	6.60E-58	Serine/threonine-protein kinase haspin homolog (AtHaspin) (EC 2.7.11.1)	histone H3-T11 phosphorylation [GO:0035407]; histone H3-T3 phosphorylation [GO:0072355]; intracellular signal transduction [GO:0035556]; mitotic cell cycle [GO:0000278]	chromosome [GO:0005694]; cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]; phragmoplast [GO:0009524]	ATP binding [GO:0005524]; histone kinase activity (H3-T11 specific) [GO:0035402]; histone kinase activity (H3-T3 specific) [GO:0072354]; protein serine/threonine kinase activity [GO:0004674]	GO:0000278; GO:0004674; GO:0005524; GO:0005634; GO:0005694; GO:0005737; GO:0005856; GO:0009524; GO:0035402; GO:0035407; GO:0035556; GO:0048471; GO:0072354; GO:0072355	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN231207_c0_g1	-6.316199447	5.903988265	14.59724519	0.00087566	0.007810284	Q7Y1L9	TRINITY_DN231207_c0_g1_i1	1.10E-12	Protein SPIRAL1-like 1	cortical microtubule organization [GO:0043622]	"cortical microtubule, transverse to long axis [GO:0010005]"		GO:0010005; GO:0043622	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN231504_c0_g1	8.452997496	1.65092527	10.38591085	0.004987694	0.031935814	Q5F3X0	TRINITY_DN231504_c0_g1_i1	6.80E-28	Lysocardiolipin acyltransferase 1 (EC 2.3.1.-) (1-acylglycerol-3-phosphate O-acyltransferase 8) (1-AGP acyltransferase 8) (1-AGPAT 8) (EC 2.3.1.51) (Acyl-CoA:lysocardiolipin acyltransferase 1)	CDP-diacylglycerol biosynthetic process [GO:0016024]; multicellular organism development [GO:0007275]; phosphatidylinositol acyl-chain remodeling [GO:0036149]; phospholipid metabolic process [GO:0006644]	cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]	"1-acylglycerol-3-phosphate O-acyltransferase activity [GO:0003841]; transferase activity, transferring acyl groups [GO:0016746]"	GO:0003841; GO:0005783; GO:0005789; GO:0005829; GO:0006644; GO:0007275; GO:0016021; GO:0016024; GO:0016746; GO:0036149	reviewed	Gallus gallus (Chicken)
TRINITY_DN231598_c0_g2	8.123754884	1.585223318	10.4339026	0.004908382	0.031648837	Q95JF4	TRINITY_DN231598_c0_g2_i1	8.60E-25	DnaJ homolog subfamily A member 1 (DnaJ protein homolog 2) (DJ-2) (Mydj2)	negative regulation of apoptotic process [GO:0043066]; negative regulation of JUN kinase activity [GO:0043508]; positive regulation of apoptotic process [GO:0043065]; protein folding [GO:0006457]; protein localization to mitochondrion [GO:0070585]; regulation of protein transport [GO:0051223]; response to heat [GO:0009408]	endoplasmic reticulum [GO:0005783]; membrane [GO:0016020]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]	ATPase activator activity [GO:0001671]; ATP binding [GO:0005524]; chaperone binding [GO:0051087]; Hsp70 protein binding [GO:0030544]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]	GO:0001671; GO:0005524; GO:0005634; GO:0005739; GO:0005783; GO:0006457; GO:0009408; GO:0016020; GO:0030544; GO:0043065; GO:0043066; GO:0043508; GO:0046872; GO:0048471; GO:0051082; GO:0051087; GO:0051223; GO:0070585	reviewed	Chlorocebus aethiops (Green monkey) (Cercopithecus aethiops)
TRINITY_DN233040_c0_g2	9.015096481	1.812795093	10.87324932	0.004244828	0.028314099	Q9VVI9	TRINITY_DN233040_c0_g2_i1	1.80E-38	Charged multivesicular body protein 5 (Vacuolar protein-sorting-associated protein 60)	endosome transport via multivesicular body sorting pathway [GO:0032509]; protein transport [GO:0015031]; vacuolar transport [GO:0007034]	ESCRT III complex [GO:0000815]		GO:0000815; GO:0007034; GO:0015031; GO:0032509	reviewed	Drosophila melanogaster (Fruit fly)
TRINITY_DN233686_c0_g1	10.97524919	4.800416979	19.98246642	0.000173874	0.001993116	Q9XIV8	TRINITY_DN233686_c0_g1_i1	6.20E-98	Peroxidase N1 (EC 1.11.1.7) (Peroxidase B2) (Peroxidase B3)	hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979]	extracellular region [GO:0005576]	heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]	GO:0004601; GO:0005576; GO:0006979; GO:0020037; GO:0042744; GO:0046872	reviewed	Nicotiana tabacum (Common tobacco)
TRINITY_DN234168_c0_g1	19.70795841	6.830639992	121.4789691	5.91E-10	1.71E-08	P40412	TRINITY_DN234168_c0_g1_i1	4.00E-09	T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19)	protein folding [GO:0006457]	cytoplasm [GO:0005737]	ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]	GO:0005524; GO:0005737; GO:0006457; GO:0051082	reviewed	Avena sativa (Oat)
TRINITY_DN234177_c0_g1	-7.186335703	4.01711896	10.98118721	0.003024102	0.021956702	Q9FIK1	TRINITY_DN234177_c0_g1_i1	2.40E-105	BTB/POZ domain-containing protein At5g47800	protein ubiquitination [GO:0016567]			GO:0016567	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN234179_c0_g1	9.675902417	3.592487687	14.03056225	0.001271146	0.01066178	Q9NRD8	TRINITY_DN234179_c0_g1_i1	7.50E-21	Dual oxidase 2 (EC 1.11.1.-) (EC 1.6.3.1) (Large NOX 2) (Long NOX 2) (NADH/NADPH thyroid oxidase p138-tox) (NADPH oxidase/peroxidase DUOX2) (NADPH thyroid oxidase 2) (Thyroid oxidase 2) (p138 thyroid oxidase)	cuticle development [GO:0042335]; cytokine-mediated signaling pathway [GO:0019221]; defense response [GO:0006952]; hormone biosynthetic process [GO:0042446]; hydrogen peroxide biosynthetic process [GO:0050665]; hydrogen peroxide catabolic process [GO:0042744]; oxidation-reduction process [GO:0055114]; positive regulation of cell motility [GO:2000147]; positive regulation of wound healing [GO:0090303]; response to cAMP [GO:0051591]; response to oxidative stress [GO:0006979]; response to virus [GO:0009615]; superoxide anion generation [GO:0042554]; thyroid hormone generation [GO:0006590]	apical part of cell [GO:0045177]; apical plasma membrane [GO:0016324]; cell junction [GO:0030054]; cell leading edge [GO:0031252]; cell surface [GO:0009986]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; extracellular exosome [GO:0070062]; NADPH oxidase complex [GO:0043020]; plasma membrane [GO:0005886]	calcium ion binding [GO:0005509]; heme binding [GO:0020037]; NAD(P)H oxidase activity [GO:0016174]; peroxidase activity [GO:0004601]; superoxide-generating NADPH oxidase activity [GO:0016175]	GO:0004601; GO:0005509; GO:0005783; GO:0005829; GO:0005886; GO:0006590; GO:0006952; GO:0006979; GO:0009615; GO:0009986; GO:0016174; GO:0016175; GO:0016324; GO:0019221; GO:0020037; GO:0030054; GO:0031252; GO:0042335; GO:0042446; GO:0042554; GO:0042744; GO:0043020; GO:0045177; GO:0050665; GO:0051591; GO:0055114; GO:0070062; GO:0090303; GO:2000147	reviewed	Homo sapiens (Human)
TRINITY_DN238280_c0_g1	10.0903011	2.245984205	11.05334064	0.004002543	0.027106939	O01541	TRINITY_DN238280_c0_g1_i1	2.40E-61	"Alanine--tRNA ligase, cytoplasmic (EC 6.1.1.7) (AlaRS A) (Alanyl-tRNA synthetase)"	alanyl-tRNA aminoacylation [GO:0006419]; tRNA modification [GO:0006400]	mitochondrion [GO:0005739]	alanine-tRNA ligase activity [GO:0004813]; amino acid binding [GO:0016597]; aminoacyl-tRNA editing activity [GO:0002161]; ATP binding [GO:0005524]; tRNA binding [GO:0000049]; zinc ion binding [GO:0008270]	GO:0000049; GO:0002161; GO:0004813; GO:0005524; GO:0005739; GO:0006400; GO:0006419; GO:0008270; GO:0016597	reviewed	Caenorhabditis elegans
TRINITY_DN250557_c0_g1	8.744758123	3.719193903	16.93598516	0.000421332	0.004166207	Q9LMN7	TRINITY_DN250557_c0_g1_i1	3.30E-134	Wall-associated receptor kinase 5 (EC 2.7.11.-)		integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; polysaccharide binding [GO:0030247]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005509; GO:0005524; GO:0005886; GO:0016021; GO:0030247	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN251094_c0_g1	-11.61378913	2.588398531	18.51172728	0.000427145	0.004210237	Q8LC69	TRINITY_DN251094_c0_g1_i1	2.00E-35	RING-H2 finger protein ATL8 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL8)	protein ubiquitination [GO:0016567]	integral component of membrane [GO:0016021]	metal ion binding [GO:0046872]; transferase activity [GO:0016740]	GO:0016021; GO:0016567; GO:0016740; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN251132_c0_g1	-6.917574199	5.531080097	9.097593457	0.00614534	0.037963727	Q651J5	TRINITY_DN251132_c0_g1_i1	5.70E-28	Phosphate transporter PHO1-3 (Protein PHO1-3) (OsPHO1;3)	cellular response to phosphate starvation [GO:0016036]; phosphate ion transport [GO:0006817]	Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]	inositol hexakisphosphate binding [GO:0000822]; phosphate ion transmembrane transporter activity [GO:0015114]	GO:0000822; GO:0005794; GO:0005802; GO:0005886; GO:0006817; GO:0015114; GO:0016021; GO:0016036	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN25194_c0_g1	-7.090122528	1.596246706	9.132573061	0.007315265	0.043962614	B1Q3J6	TRINITY_DN25194_c0_g1_i1	4.30E-80	DNA (cytosine-5)-methyltransferase 1B (OsMET1b) (EC 2.1.1.37) (DNA methyltransferase 1-2) (OsMET1-2)	DNA methylation on cytosine within a CG sequence [GO:0010424]; embryo development ending in seed dormancy [GO:0009793]; maintenance of DNA methylation [GO:0010216]; regulation of gene expression by genetic imprinting [GO:0006349]	nucleus [GO:0005634]	chromatin binding [GO:0003682]; DNA (cytosine-5-)-methyltransferase activity [GO:0003886]; DNA binding [GO:0003677]	GO:0003677; GO:0003682; GO:0003886; GO:0005634; GO:0006349; GO:0009793; GO:0010216; GO:0010424	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN252333_c0_g1	-4.103983292	10.39338543	9.882980407	0.004544936	0.029928884	P92934	TRINITY_DN252333_c0_g1_i1	1.10E-31	Amino acid permease 6 (Amino acid transporter AAP6)	amino acid transmembrane transport [GO:0003333]; aspartate transmembrane transport [GO:0015810]; tryptophan transport [GO:0015827]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	acidic amino acid transmembrane transporter activity [GO:0015172]; amino acid transmembrane transporter activity [GO:0015171]; neutral amino acid transmembrane transporter activity [GO:0015175]; symporter activity [GO:0015293]	GO:0003333; GO:0005886; GO:0015171; GO:0015172; GO:0015175; GO:0015293; GO:0015810; GO:0015827; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN252362_c0_g1	-3.649819338	7.758188874	13.42448936	0.001288617	0.010757372	Q9M0E2	TRINITY_DN252362_c0_g1_i1	2.20E-32	60S ribosomal protein L28-2	translation [GO:0006412]	cytosolic large ribosomal subunit [GO:0022625]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005886; GO:0006412; GO:0009506; GO:0022625	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN252876_c0_g1	10.55371907	7.627938849	57.16950765	1.10E-07	2.34E-06	Q0JGM8	TRINITY_DN252876_c0_g1_i1	1.80E-19	Cysteine proteinase inhibitor 5 (Oryzacystatin V) (OC-V) (Oryzacystatin-5)	defense response [GO:0006952]	extracellular region [GO:0005576]	cysteine-type endopeptidase inhibitor activity [GO:0004869]	GO:0004869; GO:0005576; GO:0006952	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN254083_c0_g1	-2.989501338	7.735954684	8.597574739	0.00748278	0.044795365	Q9AST6	TRINITY_DN254083_c0_g1_i1	3.00E-19	Vacuolar protein sorting-associated protein 55 homolog	late endosome to vacuole transport via multivesicular body sorting pathway [GO:0032511]; negative regulation of protein localization to cell surface [GO:2000009]; protein transport [GO:0015031]	endosome [GO:0005768]; endosome membrane [GO:0010008]; integral component of membrane [GO:0016021]; vacuole [GO:0005773]		GO:0005768; GO:0005773; GO:0010008; GO:0015031; GO:0016021; GO:0032511; GO:2000009	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN254084_c0_g1	17.15648079	5.259517997	61.98798397	1.47E-07	3.04E-06	Q47BF5	TRINITY_DN254084_c0_g1_i1	5.60E-35	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase (HMG aldolase) (EC 4.1.3.17) (Oxaloacetate decarboxylase) (OAA decarboxylase) (EC 4.1.1.112) (Regulator of ribonuclease activity homolog) (RraA-like protein)	regulation of RNA metabolic process [GO:0051252]		4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [GO:0047443]; metal ion binding [GO:0046872]; ribonuclease inhibitor activity [GO:0008428]	GO:0008428; GO:0046872; GO:0047443; GO:0051252	reviewed	Dechloromonas aromatica (strain RCB)
TRINITY_DN254239_c0_g1	21.56764307	9.564545075	246.3233308	8.61E-14	7.01E-12	Q9FVI2	TRINITY_DN254239_c0_g1_i1	4.90E-10	Actin-depolymerizing factor 1 (ADF-1)	actin filament depolymerization [GO:0030042]	actin cytoskeleton [GO:0015629]	actin binding [GO:0003779]	GO:0003779; GO:0015629; GO:0030042	reviewed	Petunia hybrida (Petunia)
TRINITY_DN254309_c0_g1	24.47632345	8.215265962	275.5164266	5.96E-12	2.36E-10	Q9SDS7	TRINITY_DN254309_c0_g1_i1	1.90E-40	V-type proton ATPase subunit C (V-ATPase subunit C) (Vacuolar H(+)-ATPase subunit C) (Vacuolar proton pump subunit C)	ATP hydrolysis coupled proton transport [GO:0015991]; unidimensional cell growth [GO:0009826]	"chloroplast [GO:0009507]; Golgi apparatus [GO:0005794]; plant-type vacuole [GO:0000325]; plasma membrane [GO:0005886]; vacuolar membrane [GO:0005774]; vacuolar proton-transporting V-type ATPase, V1 domain [GO:0000221]; vacuole [GO:0005773]"	"proton-exporting ATPase activity, phosphorylative mechanism [GO:0008553]; proton-transporting ATPase activity, rotational mechanism [GO:0046961]"	GO:0000221; GO:0000325; GO:0005773; GO:0005774; GO:0005794; GO:0005886; GO:0008553; GO:0009507; GO:0009826; GO:0015991; GO:0046961	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN25521_c0_g1	5.984200242	2.856479634	10.12088734	0.004155257	0.027776502	Q9C8D1	TRINITY_DN25521_c0_g1_i1	3.20E-12	U-box domain-containing protein 20 (EC 2.3.2.27) (Plant U-box protein 20) (RING-type E3 ubiquitin transferase PUB20)	response to chitin [GO:0010200]		ubiquitin-protein transferase activity [GO:0004842]	GO:0004842; GO:0010200	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN255257_c0_g1	23.25635436	9.000159587	298.0378925	1.13E-14	1.91E-12	P14906	TRINITY_DN255257_c0_g1_i1	1.10E-28	Protein translocation protein SEC63 (Protein NPL1) (Sec62/63 complex 73 kDa subunit)	"cytosol to endoplasmic reticulum transport [GO:0046967]; posttranslational protein targeting to endoplasmic reticulum membrane [GO:0006620]; posttranslational protein targeting to membrane, translocation [GO:0031204]; SRP-dependent cotranslational protein targeting to membrane [GO:0006614]"	endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; nuclear inner membrane [GO:0005637]; Sec62/Sec63 complex [GO:0031207]	protein transmembrane transporter activity [GO:0008320]	GO:0005637; GO:0005739; GO:0005783; GO:0006614; GO:0006620; GO:0008320; GO:0016021; GO:0031204; GO:0031207; GO:0046967	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN255876_c0_g1	21.88999175	9.276475045	350.6749003	1.96E-15	8.15E-13	Q9SGE9	TRINITY_DN255876_c0_g1_i1	5.40E-135	"Phenylalanine--tRNA ligase beta subunit, cytoplasmic (EC 6.1.1.20) (Phenylalanyl-tRNA synthetase beta subunit) (PheRS)"	phenylalanyl-tRNA aminoacylation [GO:0006432]	cytosol [GO:0005829]; phenylalanine-tRNA ligase complex [GO:0009328]	ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]; phenylalanine-tRNA ligase activity [GO:0004826]; RNA binding [GO:0003723]	GO:0000287; GO:0003723; GO:0004826; GO:0005524; GO:0005829; GO:0006432; GO:0009328	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN255899_c0_g1	-6.081648803	5.931596348	14.03098096	0.001053413	0.009132531	O48788	TRINITY_DN255899_c0_g1_i1	3.30E-87	Probable inactive receptor kinase At2g26730		integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	ATP binding [GO:0005524]; protein kinase activity [GO:0004672]	GO:0004672; GO:0005524; GO:0005886; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN255905_c0_g1	7.773712848	1.87070305	10.5466474	0.00472759	0.030803981	O76039	TRINITY_DN255905_c0_g1_i1	2.70E-27	Cyclin-dependent kinase-like 5 (EC 2.7.11.22) (Serine/threonine-protein kinase 9)	neuron migration [GO:0001764]; positive regulation of axon extension [GO:0045773]; positive regulation of dendrite morphogenesis [GO:0050775]; positive regulation of dendritic spine development [GO:0060999]; positive regulation of GTPase activity [GO:0043547]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; regulation of cilium assembly [GO:1902017]; regulation of dendrite development [GO:0050773]; regulation of postsynapse organization [GO:0099175]	"centrosome [GO:0005813]; ciliary basal body [GO:0036064]; ciliary tip [GO:0097542]; cytosol [GO:0005829]; dendrite cytoplasm [GO:0032839]; dendritic growth cone [GO:0044294]; glutamatergic synapse [GO:0098978]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; perinuclear region of cytoplasm [GO:0048471]; postsynaptic density, intracellular component [GO:0099092]; ruffle membrane [GO:0032587]"	ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; kinase activity [GO:0016301]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]; Rac GTPase binding [GO:0048365]	GO:0001764; GO:0004672; GO:0004674; GO:0004693; GO:0005524; GO:0005634; GO:0005654; GO:0005813; GO:0005829; GO:0006468; GO:0016301; GO:0032587; GO:0032839; GO:0036064; GO:0043547; GO:0044294; GO:0045773; GO:0046777; GO:0048365; GO:0048471; GO:0050773; GO:0050775; GO:0060999; GO:0097542; GO:0098978; GO:0099092; GO:0099175; GO:1902017	reviewed	Homo sapiens (Human)
TRINITY_DN255960_c0_g1	10.32703276	2.716057582	11.09413734	0.003949847	0.02688302	Q92122	TRINITY_DN255960_c0_g1_i1	2.50E-153	Pyruvate kinase PKM (EC 2.7.1.40) (Cytosolic thyroid hormone-binding protein) (CTHBP)			ATP binding [GO:0005524]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; potassium ion binding [GO:0030955]; pyruvate kinase activity [GO:0004743]	GO:0000287; GO:0004743; GO:0005524; GO:0016301; GO:0030955	reviewed	Xenopus laevis (African clawed frog)
TRINITY_DN255993_c0_g1	12.38110571	3.192355887	16.84704087	0.000736896	0.006787781	P0DJ52	TRINITY_DN255993_c0_g1_i1	1.50E-105	60S ribosomal protein L8	translation [GO:0006412]	ribosome [GO:0005840]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005840; GO:0006412; GO:0019843	reviewed	Tetrahymena thermophila (strain SB210)
TRINITY_DN256219_c0_g2	19.71133058	6.521373331	102.6736834	2.49E-09	6.71E-08	Q9NZB8	TRINITY_DN256219_c0_g2_i1	6.10E-70	"Molybdenum cofactor biosynthesis protein 1 (Cell migration-inducing gene 11 protein) (Molybdenum cofactor synthesis-step 1 protein A-B) [Includes: GTP 3',8-cyclase (EC 4.1.99.22) (Molybdenum cofactor biosynthesis protein A); Cyclic pyranopterin monophosphate synthase (EC 4.6.1.17) (Molybdenum cofactor biosynthesis protein C)]"	molybdopterin cofactor biosynthetic process [GO:0032324]; Mo-molybdopterin cofactor biosynthetic process [GO:0006777]	cytosol [GO:0005829]; molybdopterin synthase complex [GO:0019008]; nucleus [GO:0005634]	"4 iron, 4 sulfur cluster binding [GO:0051539]; cyclic pyranopterin monophosphate synthase activity [GO:0061799]; GTP 3',8'-cyclase activity [GO:0061798]; GTP binding [GO:0005525]; metal ion binding [GO:0046872]"	GO:0005525; GO:0005634; GO:0005829; GO:0006777; GO:0019008; GO:0032324; GO:0046872; GO:0051539; GO:0061798; GO:0061799	reviewed	Homo sapiens (Human)
TRINITY_DN256326_c0_g1	16.02271577	4.136831195	44.28314797	4.02E-06	6.70E-05	Q8GXU8	TRINITY_DN256326_c0_g1_i2	7.80E-15	"1-acyl-sn-glycerol-3-phosphate acyltransferase LPAT1, chloroplastic (EC 2.3.1.51) (EC 2.3.1.n4) (Lysophosphatidyl acyltransferase 1) (Protein EMBRYO DEFECTIVE 1995)"	CDP-diacylglycerol biosynthetic process [GO:0016024]; embryo development ending in seed dormancy [GO:0009793]; phosphatidic acid biosynthetic process [GO:0006654]; phosphatidylglycerol biosynthetic process [GO:0006655]	chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast membrane [GO:0031969]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plastid [GO:0009536]	1-acylglycerol-3-phosphate O-acyltransferase activity [GO:0003841]	GO:0003841; GO:0005783; GO:0006654; GO:0006655; GO:0009507; GO:0009536; GO:0009793; GO:0009941; GO:0016021; GO:0016024; GO:0031969	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN256462_c0_g1	2.11606484	11.1433419	10.72621362	0.003319367	0.023355788	Q9LVQ4	TRINITY_DN256462_c0_g1_i1	1.30E-31	WEB family protein At5g55860	cellular response to mechanical stimulus [GO:0071260]; chloroplast accumulation movement [GO:0009904]; chloroplast avoidance movement [GO:0009903]	cytosol [GO:0005829]; plasma membrane [GO:0005886]		GO:0005829; GO:0005886; GO:0009903; GO:0009904; GO:0071260	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN256514_c0_g2	-3.883162147	7.67987491	13.85554072	0.001116216	0.009623091	P35686	TRINITY_DN256514_c0_g2_i2	3.30E-38	40S ribosomal protein S20	translation [GO:0006412]	cytosolic small ribosomal subunit [GO:0022627]	RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]	GO:0003723; GO:0003735; GO:0006412; GO:0022627	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN256557_c0_g2	8.142746027	1.662892523	9.692981019	0.006310108	0.038749573	Q09541	TRINITY_DN256557_c0_g2_i1	1.40E-27	Tripeptidyl-peptidase 2 (TPP2) (EC 3.4.14.10) (Tripeptidyl aminopeptidase) (Tripeptidyl peptidase II) (TPPII)	positive regulation of lipid storage [GO:0010884]	cytosol [GO:0005829]	aminopeptidase activity [GO:0004177]; serine-type endopeptidase activity [GO:0004252]; tripeptidyl-peptidase activity [GO:0008240]	GO:0004177; GO:0004252; GO:0005829; GO:0008240; GO:0010884	reviewed	Caenorhabditis elegans
TRINITY_DN257902_c0_g1	7.769562096	3.040995507	8.822824922	0.006844298	0.0412926	Q8NBN7	TRINITY_DN257902_c0_g1_i1	4.10E-22	Retinol dehydrogenase 13 (EC 1.1.1.300) (Short chain dehydrogenase/reductase family 7C member 3)	eye photoreceptor cell development [GO:0042462]; response to high light intensity [GO:0009644]; retina layer formation [GO:0010842]; retinal metabolic process [GO:0042574]	mitochondrial inner membrane [GO:0005743]	NADP-retinol dehydrogenase activity [GO:0052650]	GO:0005743; GO:0009644; GO:0010842; GO:0042462; GO:0042574; GO:0052650	reviewed	Homo sapiens (Human)
TRINITY_DN257903_c0_g1	9.689307116	1.953570906	13.65116861	0.001793398	0.014087733	A6VYC5	TRINITY_DN257903_c0_g1_i1	0.00019	UPF0176 protein Mmwyl1_2535					reviewed	Marinomonas sp. (strain MWYL1)
TRINITY_DN259162_c0_g1	-8.021825133	1.678153599	10.56328212	0.004436367	0.029338793	P0C8K6	TRINITY_DN259162_c0_g1_i1	2.00E-25	"60S ribosomal protein L2, mitochondrial"	translation [GO:0006412]	mitochondrion [GO:0005739]; ribosome [GO:0005840]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005739; GO:0005840; GO:0006412	reviewed	Oryza sativa (Rice)
TRINITY_DN259522_c0_g1	6.737349599	3.046717473	9.245957617	0.005800871	0.036124135	Q852N6	TRINITY_DN259522_c0_g1_i1	6.30E-186	Calcium-dependent protein kinase 11 (OsCDPK11) (OsCPK11) (EC 2.7.11.1)	abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]	cytoplasm [GO:0005737]; membrane [GO:0016020]; nucleus [GO:0005634]	ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calcium ion binding [GO:0005509]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]	GO:0004683; GO:0005509; GO:0005516; GO:0005524; GO:0005634; GO:0005737; GO:0009738; GO:0009931; GO:0016020; GO:0018105; GO:0035556; GO:0046777	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN259522_c1_g1	-6.800789282	4.260275504	12.12730131	0.002009434	0.015547996	Q8LPZ7	TRINITY_DN259522_c1_g1_i1	2.20E-129	Calcium-dependent protein kinase 3 (OsCDPK3) (OsCPK3) (EC 2.7.11.1)	abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]	cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]	ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calcium ion binding [GO:0005509]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]	GO:0004683; GO:0005509; GO:0005516; GO:0005524; GO:0005634; GO:0005737; GO:0005886; GO:0009738; GO:0009931; GO:0018105; GO:0035556; GO:0046777	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN259595_c0_g1	22.63740686	11.26851605	240.921692	1.09E-13	8.48E-12	P43644	TRINITY_DN259595_c0_g1_i1	1.10E-83	DnaJ protein homolog ANJ1	protein folding [GO:0006457]; response to heat [GO:0009408]	membrane [GO:0016020]	ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; metal ion binding [GO:0046872]; unfolded protein binding [GO:0051082]	GO:0005524; GO:0006457; GO:0009408; GO:0016020; GO:0031072; GO:0046872; GO:0051082	reviewed	Atriplex nummularia (Old man saltbush) (Atriplex johnstonii)
TRINITY_DN271000_c0_g1	21.75630532	8.759354479	240.7591653	1.25E-12	6.16E-11	Q9K8E9	TRINITY_DN271000_c0_g1_i1	2.00E-84	3-isopropylmalate dehydrogenase (EC 1.1.1.85) (3-IPM-DH) (Beta-IPM dehydrogenase) (IMDH)	leucine biosynthetic process [GO:0009098]	cytoplasm [GO:0005737]	3-isopropylmalate dehydrogenase activity [GO:0003862]; magnesium ion binding [GO:0000287]; NAD binding [GO:0051287]	GO:0000287; GO:0003862; GO:0005737; GO:0009098; GO:0051287	reviewed	Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
TRINITY_DN271057_c0_g1	-3.290309898	6.882366345	8.246094029	0.008614155	0.049524395	F4IP69	TRINITY_DN271057_c0_g1_i1	1.10E-206	Sec1 family domain-containing protein MIP3 (MAG2-interacting protein 3)	protein maturation [GO:0051604]; protein transport [GO:0015031]; vacuolar protein processing [GO:0006624]; vesicle docking involved in exocytosis [GO:0006904]	endoplasmic reticulum membrane [GO:0005789]; vacuole [GO:0005773]		GO:0005773; GO:0005789; GO:0006624; GO:0006904; GO:0015031; GO:0051604	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN271251_c0_g1	-5.809885238	8.220163755	40.15184015	1.81E-06	3.18E-05	Q8W207	TRINITY_DN271251_c0_g1_i1	6.60E-124	COP9 signalosome complex subunit 2 (Signalosome subunit 2) (Protein FUSCA 12)	"multicellular organism development [GO:0007275]; negative regulation of transcription, DNA-templated [GO:0045892]; protein catabolic process [GO:0030163]; protein deneddylation [GO:0000338]; red, far-red light phototransduction [GO:0009585]"	COP9 signalosome [GO:0008180]; cytosol [GO:0005829]; nucleus [GO:0005634]	transcription corepressor activity [GO:0003714]	GO:0000338; GO:0003714; GO:0005634; GO:0005829; GO:0007275; GO:0008180; GO:0009585; GO:0030163; GO:0045892	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN271265_c0_g1	23.18105717	8.992171307	282.0686741	2.86E-13	1.81E-11	P11029	TRINITY_DN271265_c0_g1_i1	0	Acetyl-CoA carboxylase (ACC) (EC 6.4.1.2) [Includes: Biotin carboxylase (EC 6.3.4.14)]	"fatty acid biosynthetic process [GO:0006633]; malonyl-CoA biosynthetic process [GO:2001295]; positive regulation of gene expression [GO:0010628]; positive regulation of transcription, DNA-templated [GO:0045893]; regulation of biological quality [GO:0065008]; regulation of gene expression, epigenetic [GO:0040029]; response to carbohydrate [GO:0009743]; response to fatty acid [GO:0070542]; response to thyroid hormone [GO:0097066]; transport [GO:0006810]"	cell [GO:0005623]; cytoplasm [GO:0005737]	acetyl-CoA carboxylase activity [GO:0003989]; ATP binding [GO:0005524]; biotin binding [GO:0009374]; biotin carboxylase activity [GO:0004075]; DBD domain binding [GO:0050692]; metal ion binding [GO:0046872]; signaling receptor binding [GO:0005102]; sterol response element binding [GO:0032810]; thyroid hormone receptor binding [GO:0046966]	GO:0003989; GO:0004075; GO:0005102; GO:0005524; GO:0005623; GO:0005737; GO:0006633; GO:0006810; GO:0009374; GO:0009743; GO:0010628; GO:0032810; GO:0040029; GO:0045893; GO:0046872; GO:0046966; GO:0050692; GO:0065008; GO:0070542; GO:0097066; GO:2001295	reviewed	Gallus gallus (Chicken)
TRINITY_DN271268_c0_g1	16.79561992	5.655596457	65.91438207	9.17E-08	2.01E-06	Q9P7N1	TRINITY_DN271268_c0_g1_i1	1.90E-23	EKC/KEOPS complex subunit SPAP27G11.07c (EC 3.6.-.-) (Atypical serine/threonine protein kinase BUD32 homolog) (EC 2.7.11.1)	protein phosphorylation [GO:0006468]; tRNA threonylcarbamoyladenosine metabolic process [GO:0070525]; tRNA threonylcarbamoyladenosine modification [GO:0002949]	"chromosome, telomeric region [GO:0000781]; cytosol [GO:0005829]; EKC/KEOPS complex [GO:0000408]; nucleus [GO:0005634]"	ATPase activity [GO:0016887]; ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]	GO:0000408; GO:0000781; GO:0002949; GO:0004674; GO:0005524; GO:0005634; GO:0005829; GO:0006468; GO:0016887; GO:0070525	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN271275_c0_g1	-5.72715617	6.768972691	19.74427077	0.000185868	0.002107184	O82197	TRINITY_DN271275_c0_g1_i1	1.70E-36	Vacuolar protein sorting-associated protein 32 homolog 1 (AtVPS32-1) (Charged multivesicular body protein 4 homolog 1) (ESCRT-III complex subunit VPS32 homolog 1)	protein transport [GO:0015031]; vacuolar transport [GO:0007034]	ESCRT III complex [GO:0000815]; plasma membrane [GO:0005886]		GO:0000815; GO:0005886; GO:0007034; GO:0015031	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN271596_c0_g1	8.916624046	1.941512966	10.2210833	0.005271302	0.033233732	B7ZFT1	TRINITY_DN271596_c0_g1_i1	9.60E-19	Glutaredoxin-1 (Glutathione-dependent oxidoreductase 1)	cell redox homeostasis [GO:0045454]	cytosol [GO:0005829]	electron transfer activity [GO:0009055]; protein disulfide oxidoreductase activity [GO:0015035]	GO:0005829; GO:0009055; GO:0015035; GO:0045454	reviewed	Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) (Arbuscular mycorrhizal fungus) (Glomus intraradices)
TRINITY_DN271641_c0_g3	8.626007256	1.703707653	11.93890436	0.003016537	0.021956702	Q86AQ7	TRINITY_DN271641_c0_g3_i1	1.60E-50	Vesicle-associated membrane protein 7B	endosome to lysosome transport [GO:0008333]; exocytosis [GO:0006887]; protein transport [GO:0015031]; vesicle fusion [GO:0006906]	contractile vacuole [GO:0000331]; endoplasmic reticulum membrane [GO:0005789]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; late endosome membrane [GO:0031902]; lysosomal membrane [GO:0005765]; phagocytic vesicle membrane [GO:0030670]; SNARE complex [GO:0031201]; transport vesicle membrane [GO:0030658]	SNAP receptor activity [GO:0005484]; SNARE binding [GO:0000149]	GO:0000149; GO:0000331; GO:0005484; GO:0005765; GO:0005768; GO:0005789; GO:0005794; GO:0006887; GO:0006906; GO:0008333; GO:0015031; GO:0016021; GO:0030658; GO:0030670; GO:0031201; GO:0031902	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN271649_c0_g1	9.197800248	2.375494239	10.59998055	0.003952108	0.02688302	Q99MN1	TRINITY_DN271649_c0_g1_i1	7.60E-108	Lysine--tRNA ligase (EC 2.7.7.-) (EC 6.1.1.6) (Lysyl-tRNA synthetase) (LysRS)	"activation of MAPK activity [GO:0000187]; basophil activation involved in immune response [GO:0002276]; diadenosine tetraphosphate biosynthetic process [GO:0015966]; ERK1 and ERK2 cascade [GO:0070371]; lysyl-tRNA aminoacylation [GO:0006430]; negative regulation of cell population proliferation [GO:0008285]; positive regulation of cytokine production involved in inflammatory response [GO:1900017]; positive regulation of cytokine secretion involved in immune response [GO:0002741]; positive regulation of ERK1 and ERK2 cascade [GO:0070374]; positive regulation of macrophage activation [GO:0043032]; positive regulation of macrophage chemotaxis [GO:0010759]; positive regulation of metallopeptidase activity [GO:1905050]; positive regulation of p38MAPK cascade [GO:1900745]; positive regulation of transcription, DNA-templated [GO:0045893]; response to X-ray [GO:0010165]; tumor necrosis factor-mediated signaling pathway [GO:0033209]"	aminoacyl-tRNA synthetase multienzyme complex [GO:0017101]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; extracellular space [GO:0005615]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; plasma membrane [GO:0005886]	amino acid binding [GO:0016597]; ATP adenylyltransferase activity [GO:0003877]; ATP binding [GO:0005524]; identical protein binding [GO:0042802]; lysine-tRNA ligase activity [GO:0004824]; protein homodimerization activity [GO:0042803]; scaffold protein binding [GO:0097110]; tRNA binding [GO:0000049]	GO:0000049; GO:0000187; GO:0002276; GO:0002741; GO:0003877; GO:0004824; GO:0005524; GO:0005615; GO:0005634; GO:0005737; GO:0005739; GO:0005829; GO:0005886; GO:0006430; GO:0008285; GO:0010165; GO:0010759; GO:0015966; GO:0016597; GO:0017101; GO:0033209; GO:0042802; GO:0042803; GO:0043032; GO:0045893; GO:0070371; GO:0070374; GO:0097110; GO:1900017; GO:1900745; GO:1905050	reviewed	Mus musculus (Mouse)
TRINITY_DN271662_c0_g1	-3.182610212	9.506240763	12.54797413	0.001736244	0.013778655	O65660	TRINITY_DN271662_c0_g1_i1	3.10E-46	PLAT domain-containing protein 1 (AtPLAT1) (PLAT domain protein 1)	regulation of growth [GO:0040008]; response to cold [GO:0009409]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]	chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; endoplasmic reticulum [GO:0005783]; plasma membrane [GO:0005886]; plastoglobule [GO:0010287]; thylakoid [GO:0009579]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]	catalase activity [GO:0004096]; heme binding [GO:0020037]	GO:0004096; GO:0005773; GO:0005774; GO:0005783; GO:0005886; GO:0009409; GO:0009414; GO:0009507; GO:0009535; GO:0009579; GO:0009651; GO:0010287; GO:0020037; GO:0040008	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN271688_c0_g1	-4.807073014	5.205298917	9.841342766	0.004617176	0.030275764	P26307	TRINITY_DN271688_c0_g1_i2	1.40E-15	Regulatory protein viviparous-1	abscisic acid-activated signaling pathway [GO:0009738]; multicellular organism development [GO:0007275]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	DNA binding [GO:0003677]	GO:0003677; GO:0005634; GO:0005737; GO:0007275; GO:0009738	reviewed	Zea mays (Maize)
TRINITY_DN274001_c0_g1	21.30828639	7.819741668	142.4662493	1.46E-10	4.93E-09	P79733	TRINITY_DN274001_c0_g1_i1	2.80E-122	Ribonucleoside-diphosphate reductase subunit M2 (EC 1.17.4.1) (Ribonucleotide reductase protein R2 class I) (Ribonucleotide reductase small chain) (Ribonucleotide reductase small subunit)	deoxyribonucleotide biosynthetic process [GO:0009263]; DNA replication [GO:0006260]	cytosol [GO:0005829]	"metal ion binding [GO:0046872]; ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [GO:0004748]"	GO:0004748; GO:0005829; GO:0006260; GO:0009263; GO:0046872	reviewed	Danio rerio (Zebrafish) (Brachydanio rerio)
TRINITY_DN274005_c0_g1	-5.059361014	4.750427958	8.412388368	0.008056972	0.047138619	Q5XET5	TRINITY_DN274005_c0_g1_i1	2.30E-42	Protein HESO1 (EC 2.7.7.52) (HEN1 suppressor 1) (RNA uridylyltransferase)	regulation of gene silencing by miRNA [GO:0060964]; RNA 3' uridylation [GO:0071076]	cytoplasm [GO:0005737]; nucleus [GO:0005634]; P-body [GO:0000932]	nucleotidyltransferase activity [GO:0016779]; RNA uridylyltransferase activity [GO:0050265]	GO:0000932; GO:0005634; GO:0005737; GO:0016779; GO:0050265; GO:0060964; GO:0071076	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN274054_c0_g1	18.13842282	5.845442379	80.16795996	1.94E-08	5.03E-07	Q94C49	TRINITY_DN274054_c0_g1_i1	6.70E-25	Probable protein S-acyltransferase 13 (EC 2.3.1.225) (Probable palmitoyltransferase At4g22750) (Zinc finger DHHC domain-containing protein At4g22750)		cytoplasmic vesicle membrane [GO:0030659]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	protein-cysteine S-palmitoyltransferase activity [GO:0019706]	GO:0005886; GO:0016021; GO:0019706; GO:0030659	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN274058_c0_g1	6.793864416	3.112733277	10.75910646	0.003279558	0.023227078	Q9SID8	TRINITY_DN274058_c0_g1_i1	2.50E-86	Ras-related protein RABH1d (AtRABH1d)	"intracellular protein transport [GO:0006886]; intra-Golgi vesicle-mediated transport [GO:0006891]; Rab protein signal transduction [GO:0032482]; retrograde transport, endosome to Golgi [GO:0042147]; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum [GO:0006890]"	cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; mitochondrion [GO:0005739]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]	GO:0000139; GO:0003924; GO:0005525; GO:0005739; GO:0005794; GO:0005829; GO:0006886; GO:0006890; GO:0006891; GO:0032482; GO:0042147	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN274570_c1_g1	-8.312447753	5.939413944	27.08891235	2.80E-05	0.000383429	Q6ZD63	TRINITY_DN274570_c1_g1_i1	5.90E-144	Chromatin assembly factor 1 subunit FAS2 homolog (CAF-1 subunit FAS2 homolog) (CAF-1 p60 homolog) (Protein FASCIATA 2 homolog)	DNA recombination [GO:0006310]; DNA repair [GO:0006281]; nucleosome assembly [GO:0006334]	CAF-1 complex [GO:0033186]; nucleus [GO:0005634]	histone binding [GO:0042393]	GO:0005634; GO:0006281; GO:0006310; GO:0006334; GO:0033186; GO:0042393	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN274635_c0_g1	17.55542048	5.542557782	66.36635974	8.69E-08	1.94E-06	Q12055	TRINITY_DN274635_c0_g1_i1	3.50E-31	Adenylate kinase isoenzyme 6 homolog FAP7 (AK6) (EC 2.7.4.3) (Dual activity adenylate kinase/ATPase) (AK/ATPase) (POS9-activating factor 7)	"cellular response to oxidative stress [GO:0034599]; maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]"	cytoplasm [GO:0005737]; cytoplasmic stress granule [GO:0010494]; nucleus [GO:0005634]	adenylate kinase activity [GO:0004017]; ATPase activity [GO:0016887]; ATP binding [GO:0005524]	GO:0000462; GO:0004017; GO:0005524; GO:0005634; GO:0005737; GO:0010494; GO:0016887; GO:0034599	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN274662_c0_g1	11.08003851	2.875042615	21.59424193	0.000154838	0.001801587	Q54C29	TRINITY_DN274662_c0_g1_i1	3.70E-36	General transcription factor IIH subunit 4 (TFIIH basal transcription factor complex subunit 4)	nucleotide-excision repair [GO:0006289]; phosphorylation of RNA polymerase II C-terminal domain [GO:0070816]; transcription by RNA polymerase II [GO:0006366]	transcription factor TFIIH core complex [GO:0000439]; transcription factor TFIIH holo complex [GO:0005675]	ATPase activator activity [GO:0001671]; double-stranded DNA binding [GO:0003690]	GO:0000439; GO:0001671; GO:0003690; GO:0005675; GO:0006289; GO:0006366; GO:0070816	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN274697_c0_g1	10.2891341	2.038184166	12.04175069	0.002920941	0.02142254	Q78PY7	TRINITY_DN274697_c0_g1_i3	4.30E-60	Staphylococcal nuclease domain-containing protein 1 (EC 3.1.31.1) (100 kDa coactivator) (p100 co-activator)	gene silencing by RNA [GO:0031047]; miRNA catabolic process [GO:0010587]; regulation of cell cycle process [GO:0010564]; RNA catabolic process [GO:0006401]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; dense body [GO:0097433]; melanosome [GO:0042470]; mitochondrion [GO:0005739]; nucleus [GO:0005634]; RISC complex [GO:0016442]	endonuclease activity [GO:0004519]; endoribonuclease activity [GO:0004521]; nuclease activity [GO:0004518]; RISC complex binding [GO:1905172]; RNA binding [GO:0003723]	GO:0003723; GO:0004518; GO:0004519; GO:0004521; GO:0005634; GO:0005737; GO:0005739; GO:0005829; GO:0006401; GO:0010564; GO:0010587; GO:0016442; GO:0031047; GO:0042470; GO:0097433; GO:1905172	reviewed	Mus musculus (Mouse)
TRINITY_DN274731_c0_g1	-3.315741169	8.149086647	13.1732927	0.001402373	0.011482393	Q8LGS1	TRINITY_DN274731_c0_g1_i1	3.60E-06	Protein MARD1 (FCS-Like Zinc finger 9) (Mediator of ABA-regulated dormancy1) (Senescence-associated protein SAG102)	response to abscisic acid [GO:0009737]; response to glucose [GO:0009749]; response to mannose [GO:1905582]; response to sucrose [GO:0009744]; seed dormancy process [GO:0010162]	cytoplasmic stress granule [GO:0010494]; nucleus [GO:0005634]; P-body [GO:0000932]	kinase binding [GO:0019900]; metal ion binding [GO:0046872]	GO:0000932; GO:0005634; GO:0009737; GO:0009744; GO:0009749; GO:0010162; GO:0010494; GO:0019900; GO:0046872; GO:1905582	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN274735_c0_g1	-9.524576909	8.857083523	54.31535528	1.69E-07	3.43E-06	Q6JJ61	TRINITY_DN274735_c0_g1_i1	7.00E-62	"50S ribosomal protein L9, chloroplastic (CL9)"	translation [GO:0006412]	chloroplast [GO:0009507]; ribosome [GO:0005840]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005840; GO:0006412; GO:0009507; GO:0019843	reviewed	Ipomoea trifida (Morning glory)
TRINITY_DN274795_c0_g2	17.91123687	13.70915381	125.895172	8.21E-11	2.82E-09	Q9FIA1	TRINITY_DN274795_c0_g2_i1	8.80E-57	GDSL esterase/lipase At5g55050 (EC 3.1.1.-) (Extracellular lipase At5g55050)	lipid catabolic process [GO:0016042]	extracellular region [GO:0005576]	lipase activity [GO:0016298]	GO:0005576; GO:0016042; GO:0016298	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN274796_c0_g1	7.761921247	2.339621689	9.834526854	0.004629122	0.030289918	P93596	TRINITY_DN274796_c0_g1_i1	2.80E-70	Obtusifoliol 14-alpha demethylase (EC 1.14.14.154) (CYPLI) (Cytochrome P450 51) (Cytochrome P450-LIA1) (Fragment)	sterol biosynthetic process [GO:0016126]	membrane [GO:0016020]	"heme binding [GO:0020037]; iron ion binding [GO:0005506]; methyltransferase activity [GO:0008168]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]"	GO:0004497; GO:0005506; GO:0008168; GO:0016020; GO:0016126; GO:0016705; GO:0020037	reviewed	Triticum aestivum (Wheat)
TRINITY_DN274800_c0_g1	-3.73196875	8.818097099	22.97428499	7.77E-05	0.000981607	A4FVR1	TRINITY_DN274800_c0_g1_i1	3.50E-15	GBF-interacting protein 1-like (Protein GIP1-like)		nucleus [GO:0005634]	unfolded protein binding [GO:0051082]	GO:0005634; GO:0051082	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN274808_c0_g1	-6.852161087	3.660366183	10.37030387	0.003785716	0.026037316	A6LKY1	TRINITY_DN274808_c0_g1_i1	1.60E-08	GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) (GMP synthetase) (Glutamine amidotransferase)	glutamine metabolic process [GO:0006541]		ATP binding [GO:0005524]; GMP synthase (glutamine-hydrolyzing) activity [GO:0003922]; pyrophosphatase activity [GO:0016462]	GO:0003922; GO:0005524; GO:0006541; GO:0016462	reviewed	Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429)
TRINITY_DN274809_c0_g1	21.70924913	7.122654221	163.2573293	3.74E-10	1.10E-08	A6VU31	TRINITY_DN274809_c0_g1_i1	1.30E-16	tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase)	tRNA pseudouridine synthesis [GO:0031119]		RNA binding [GO:0003723]; tRNA pseudouridine synthase activity [GO:0106029]	GO:0003723; GO:0031119; GO:0106029	reviewed	Marinomonas sp. (strain MWYL1)
TRINITY_DN274823_c0_g1	21.36233017	12.02370424	267.6831724	3.56E-14	3.34E-12	O55044	TRINITY_DN274823_c0_g1_i2	1.40E-91	Glucose-6-phosphate 1-dehydrogenase (G6PD) (EC 1.1.1.49)	"cellular response to oxidative stress [GO:0034599]; cholesterol biosynthetic process [GO:0006695]; erythrocyte maturation [GO:0043249]; glucose 6-phosphate metabolic process [GO:0051156]; glucose metabolic process [GO:0006006]; glutathione metabolic process [GO:0006749]; NADP metabolic process [GO:0006739]; negative regulation of protein glutathionylation [GO:0010734]; pentose biosynthetic process [GO:0019322]; pentose-phosphate shunt, oxidative branch [GO:0009051]; ribose phosphate biosynthetic process [GO:0046390]"	cytoplasmic side of plasma membrane [GO:0009898]; cytosol [GO:0005829]	glucose-6-phosphate dehydrogenase activity [GO:0004345]; glucose binding [GO:0005536]; NADP binding [GO:0050661]; protein homodimerization activity [GO:0042803]	GO:0004345; GO:0005536; GO:0005829; GO:0006006; GO:0006695; GO:0006739; GO:0006749; GO:0009051; GO:0009898; GO:0010734; GO:0019322; GO:0034599; GO:0042803; GO:0043249; GO:0046390; GO:0050661; GO:0051156	reviewed	Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus)
TRINITY_DN274831_c0_g1	11.42433247	2.452097333	13.06930943	0.002132022	0.016414449	O61199	TRINITY_DN274831_c0_g1_i1	1.10E-95	"2-oxoglutarate dehydrogenase, mitochondrial (EC 1.2.4.2) (2-oxoglutarate dehydrogenase complex component E1) (OGDC-E1) (Alpha-ketoglutarate dehydrogenase)"	generation of precursor metabolites and energy [GO:0006091]; glycolytic process [GO:0006096]; tricarboxylic acid cycle [GO:0006099]	mitochondrial matrix [GO:0005759]; mitochondrial membrane [GO:0031966]; mitochondrion [GO:0005739]; oxoglutarate dehydrogenase complex [GO:0045252]	oxoglutarate dehydrogenase (succinyl-transferring) activity [GO:0004591]; thiamine pyrophosphate binding [GO:0030976]	GO:0004591; GO:0005739; GO:0005759; GO:0006091; GO:0006096; GO:0006099; GO:0030976; GO:0031966; GO:0045252	reviewed	Caenorhabditis elegans
TRINITY_DN274840_c0_g2	22.7587614	9.116857842	297.1060792	1.17E-14	1.91E-12	Q839B2	TRINITY_DN274840_c0_g2_i1	1.10E-40	Hypoxanthine-guanine phosphoribosyltransferase (HGPRT) (HGPRTase) (EC 2.4.2.8)	IMP salvage [GO:0032264]; purine ribonucleoside salvage [GO:0006166]	cytoplasm [GO:0005737]	guanine phosphoribosyltransferase activity [GO:0052657]; hypoxanthine phosphoribosyltransferase activity [GO:0004422]; metal ion binding [GO:0046872]; nucleotide binding [GO:0000166]	GO:0000166; GO:0004422; GO:0005737; GO:0006166; GO:0032264; GO:0046872; GO:0052657	reviewed	Enterococcus faecalis (strain ATCC 700802 / V583)
TRINITY_DN274865_c0_g1	-3.85471816	9.302476373	26.71314925	3.06E-05	0.000417181	O94673	TRINITY_DN274865_c0_g1_i1	3.00E-19	Uncharacterized membrane protein C776.05	phosphatidylcholine biosynthetic process [GO:0006656]	endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]	glycero-3-phosphocholine acyltransferase activity [GO:0106158]	GO:0000139; GO:0005783; GO:0005789; GO:0005794; GO:0006656; GO:0016021; GO:0106158	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN276015_c0_g1	-7.327529925	6.265810664	27.45137675	2.57E-05	0.000353526	Q9SR06	TRINITY_DN276015_c0_g1_i1	1.80E-20	Protein CLP1 homolog (CLP-like protein 3) (Protein CLP-SIMILAR PROTEIN 3)	"flower development [GO:0009908]; mRNA polyadenylation [GO:0006378]; mRNA processing [GO:0006397]; phyllome development [GO:0048827]; tRNA splicing, via endonucleolytic cleavage and ligation [GO:0006388]; vegetative to reproductive phase transition of meristem [GO:0010228]"	mRNA cleavage factor complex [GO:0005849]; nucleus [GO:0005634]	ATP binding [GO:0005524]	GO:0005524; GO:0005634; GO:0005849; GO:0006378; GO:0006388; GO:0006397; GO:0009908; GO:0010228; GO:0048827	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN276016_c0_g1	21.05887115	6.588178467	116.1232037	5.02E-09	1.34E-07	Q9SSF1	TRINITY_DN276016_c0_g1_i1	1.00E-22	Small nuclear ribonucleoprotein SmD1a (AtSmD1-a)	posttranscriptional gene silencing by RNA [GO:0035194]; spliceosomal snRNP assembly [GO:0000387]	catalytic step 2 spliceosome [GO:0071013]; commitment complex [GO:0000243]; cytosol [GO:0005829]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; nucleus [GO:0005634]; pICln-Sm protein complex [GO:0034715]; SMN-Sm protein complex [GO:0034719]; U12-type spliceosomal complex [GO:0005689]; U1 snRNP [GO:0005685]; U2 snRNP [GO:0005686]; U4 snRNP [GO:0005687]; U5 snRNP [GO:0005682]; vacuolar membrane [GO:0005774]	RNA binding [GO:0003723]	GO:0000243; GO:0000387; GO:0003723; GO:0005634; GO:0005682; GO:0005685; GO:0005686; GO:0005687; GO:0005689; GO:0005730; GO:0005774; GO:0005829; GO:0016607; GO:0034715; GO:0034719; GO:0035194; GO:0071013	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN276022_c0_g1	21.96272079	7.345891257	175.1939726	2.16E-10	7.04E-09	Q54EW1	TRINITY_DN276022_c0_g1_i1	1.30E-89	Serine hydroxymethyltransferase 2 (SHMT 2) (EC 2.1.2.1) (Glycine hydroxymethyltransferase 2) (Serine methylase 2)	cellular response to tetrahydrofolate [GO:1904482]; folic acid metabolic process [GO:0046655]; glycine biosynthetic process from serine [GO:0019264]; glycine metabolic process [GO:0006544]; L-serine catabolic process [GO:0006565]; one-carbon metabolic process [GO:0006730]; tetrahydrofolate interconversion [GO:0035999]; tetrahydrofolate metabolic process [GO:0046653]	mitochondrial matrix [GO:0005759]	amino acid binding [GO:0016597]; cobalt ion binding [GO:0050897]; glycine hydroxymethyltransferase activity [GO:0004372]; pyridoxal phosphate binding [GO:0030170]; serine binding [GO:0070905]; zinc ion binding [GO:0008270]	GO:0004372; GO:0005759; GO:0006544; GO:0006565; GO:0006730; GO:0008270; GO:0016597; GO:0019264; GO:0030170; GO:0035999; GO:0046653; GO:0046655; GO:0050897; GO:0070905; GO:1904482	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN276025_c0_g1	21.38005103	9.218821072	282.7405094	1.99E-14	2.46E-12	O18404	TRINITY_DN276025_c0_g1_i1	1.20E-52	3-hydroxyacyl-CoA dehydrogenase type-2 (EC 1.1.1.35) (17-beta-hydroxysteroid dehydrogenase 10) (17-beta-HSD 10) (EC 1.1.1.51) (3-hydroxy-2-methylbutyryl-CoA dehydrogenase) (EC 1.1.1.178) (3-hydroxyacyl-CoA dehydrogenase type II) (Mitochondrial ribonuclease P protein 2) (Mitochondrial RNase P protein 2) (Scully protein) (Type II HADH)	"acyl-CoA metabolic process [GO:0006637]; androgen metabolic process [GO:0008209]; ecdysone metabolic process [GO:0008205]; estrogen metabolic process [GO:0008210]; fatty acid metabolic process [GO:0006631]; mitochondrial tRNA processing [GO:0090646]; RNA phosphodiester bond hydrolysis, endonucleolytic [GO:0090502]; steroid metabolic process [GO:0008202]"	cytosol [GO:0005829]; mitochondrial ribonuclease P complex [GO:0030678]; mitochondrion [GO:0005739]	3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity [GO:0047015]; 3-hydroxyacyl-CoA dehydrogenase activity [GO:0003857]; 7-beta-hydroxysteroid dehydrogenase (NADP+) activity [GO:0047022]; acetoacetyl-CoA reductase activity [GO:0018454]; dihydrotestosterone 17-beta-dehydrogenase activity [GO:0035410]; estradiol 17-beta-dehydrogenase activity [GO:0004303]; steroid dehydrogenase activity [GO:0016229]; testosterone dehydrogenase (NAD+) activity [GO:0047035]; testosterone dehydrogenase [NAD(P)] activity [GO:0030283]	GO:0003857; GO:0004303; GO:0005739; GO:0005829; GO:0006631; GO:0006637; GO:0008202; GO:0008205; GO:0008209; GO:0008210; GO:0016229; GO:0018454; GO:0030283; GO:0030678; GO:0035410; GO:0047015; GO:0047022; GO:0047035; GO:0090502; GO:0090646	reviewed	Drosophila melanogaster (Fruit fly)
TRINITY_DN276063_c0_g1	22.3439653	8.917973488	223.2313491	2.43E-13	1.56E-11	Q5ZMQ9	TRINITY_DN276063_c0_g1_i1	1.30E-13	Peroxisomal targeting signal 1 receptor (PTS1 receptor) (PTS1R) (PTS1-BP) (Peroxin-5) (Peroxisomal C-terminal targeting signal import receptor) (Peroxisome receptor 1)	"protein import into peroxisome matrix, docking [GO:0016560]"	cytosol [GO:0005829]; peroxisomal membrane [GO:0005778]	peroxisome matrix targeting signal-1 binding [GO:0005052]	GO:0005052; GO:0005778; GO:0005829; GO:0016560	reviewed	Gallus gallus (Chicken)
TRINITY_DN276081_c0_g1	7.137149536	1.440265108	10.36364629	0.005024979	0.032000636	Q47UW0	TRINITY_DN276081_c0_g1_i1	5.40E-86	DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (EC 2.7.7.6) (RNA polymerase subunit beta') (Transcriptase subunit beta')	"transcription, DNA-templated [GO:0006351]"		DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]	GO:0003677; GO:0003899; GO:0006351	reviewed	Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)
TRINITY_DN276081_c0_g2	8.196833591	1.776369992	10.3667825	0.005019708	0.032000636	Q47UW0	TRINITY_DN276081_c0_g2_i1	4.30E-107	DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (EC 2.7.7.6) (RNA polymerase subunit beta') (Transcriptase subunit beta')	"transcription, DNA-templated [GO:0006351]"		DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]	GO:0003677; GO:0003899; GO:0006351	reviewed	Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)
TRINITY_DN276264_c0_g1	22.48058958	10.38127723	275.4913751	2.62E-14	2.71E-12	Q5XHZ0	TRINITY_DN276264_c0_g1_i1	2.60E-119	"Heat shock protein 75 kDa, mitochondrial (HSP 75) (TNFR-associated protein 1) (Tumor necrosis factor type 1 receptor-associated protein) (TRAP-1)"	negative regulation of cellular respiration [GO:1901856]; negative regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide [GO:1903751]; protein folding [GO:0006457]; translational attenuation [GO:0009386]	mitochondrial inner membrane [GO:0005743]; mitochondrial intermembrane space [GO:0005758]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; nucleoplasm [GO:0005654]	ATP binding [GO:0005524]; protein kinase binding [GO:0019901]; RNA binding [GO:0003723]; unfolded protein binding [GO:0051082]	GO:0003723; GO:0005524; GO:0005654; GO:0005739; GO:0005743; GO:0005758; GO:0005759; GO:0006457; GO:0009386; GO:0019901; GO:0051082; GO:1901856; GO:1903751	reviewed	Rattus norvegicus (Rat)
TRINITY_DN276264_c0_g3	21.59371566	11.32907519	357.0112763	1.61E-15	8.15E-13	P0CH36	TRINITY_DN276264_c0_g3_i1	1.70E-84	NADP-dependent alcohol dehydrogenase C 1 (Ms-ADHC 1) (EC 1.1.1.2)			alcohol dehydrogenase (NADP+) activity [GO:0008106]; zinc ion binding [GO:0008270]	GO:0008106; GO:0008270	reviewed	Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
TRINITY_DN276293_c0_g1	-11.91648487	2.699058116	19.46875112	0.000334878	0.003443645	P09444	TRINITY_DN276293_c0_g1_i1	1.80E-67	Late embryogenesis abundant protein D-34 (LEA D-34)					reviewed	Gossypium hirsutum (Upland cotton) (Gossypium mexicanum)
TRINITY_DN276293_c0_g2	-4.411171616	6.676881006	11.4022907	0.002597536	0.019418777	Q9LJ97	TRINITY_DN276293_c0_g2_i1	1.00E-21	Late embryogenesis abundant protein 31 (LEA 31) (Protein RESPONSIVE TO ABSCISIC ACID 28) (AtRAB28)	cellular ion homeostasis [GO:0006873]; response to lithium ion [GO:0010226]; seed germination [GO:0009845]	cytosol [GO:0005829]; nucleolus [GO:0005730]; nucleus [GO:0005634]		GO:0005634; GO:0005730; GO:0005829; GO:0006873; GO:0009845; GO:0010226	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN276409_c0_g1	12.69571397	3.107917915	14.67591352	0.001334043	0.011099094	P00125	TRINITY_DN276409_c0_g1_i1	1.00E-74	"Cytochrome c1, heme protein, mitochondrial (Complex III subunit 4) (Complex III subunit IV) (Cytochrome b-c1 complex subunit 4) (Ubiquinol-cytochrome-c reductase complex cytochrome c1 subunit) (Cytochrome c-1)"	"mitochondrial ATP synthesis coupled proton transport [GO:0042776]; mitochondrial electron transport, ubiquinol to cytochrome c [GO:0006122]"	integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrial respiratory chain complex III [GO:0005750]; mitochondrion [GO:0005739]	"electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity [GO:0045153]; heme binding [GO:0020037]; metal ion binding [GO:0046872]"	GO:0005739; GO:0005743; GO:0005750; GO:0006122; GO:0016021; GO:0020037; GO:0042776; GO:0045153; GO:0046872	reviewed	Bos taurus (Bovine)
TRINITY_DN276418_c0_g1	10.26956814	2.372628237	14.0133849	0.001613302	0.01296927	Q3IJK2	TRINITY_DN276418_c0_g1_i1	2.50E-86	30S ribosomal protein S5	translation [GO:0006412]	small ribosomal subunit [GO:0015935]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0006412; GO:0015935; GO:0019843	reviewed	Pseudoalteromonas haloplanktis (strain TAC 125)
TRINITY_DN276445_c0_g1	-13.0539129	3.39476385	24.095659	0.00011261	0.001361435	Q9M8M3	TRINITY_DN276445_c0_g1_i1	5.00E-85	"Pentatricopeptide repeat-containing protein At1g80550, mitochondrial"		mitochondrion [GO:0005739]		GO:0005739	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN276539_c0_g1	3.688570525	8.908401116	20.89987758	0.000134977	0.001600592	Q9SPK4	TRINITY_DN276539_c0_g1_i1	6.10E-66	Phosphoenolpyruvate carboxylase kinase 1 (AtPPCK1) (EC 2.7.11.1)	abscisic acid-activated signaling pathway [GO:0009738]; intracellular signal transduction [GO:0035556]; peptidyl-serine phosphorylation [GO:0018105]; protein autophosphorylation [GO:0046777]; response to cycloheximide [GO:0046898]; response to light stimulus [GO:0009416]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; calcium-dependent protein serine/threonine kinase activity [GO:0009931]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0004683; GO:0005516; GO:0005524; GO:0005634; GO:0005737; GO:0009416; GO:0009738; GO:0009931; GO:0018105; GO:0035556; GO:0046777; GO:0046898	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN276554_c0_g1	17.01164859	4.634943888	55.33423076	9.57E-07	1.73E-05	F4JRF4	TRINITY_DN276554_c0_g1_i1	2.10E-60	Adenine DNA glycosylase (EC 3.2.2.31) (MutY homolog) (AtMYH)	base-excision repair [GO:0006284]; DNA repair [GO:0006281]; mismatch repair [GO:0006298]	nucleus [GO:0005634]	"4 iron, 4 sulfur cluster binding [GO:0051539]; 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity [GO:0034039]; adenine/guanine mispair binding [GO:0035485]; metal ion binding [GO:0046872]; oxidized purine DNA binding [GO:0032357]; purine-specific mismatch base pair DNA N-glycosylase activity [GO:0000701]"	GO:0000701; GO:0005634; GO:0006281; GO:0006284; GO:0006298; GO:0032357; GO:0034039; GO:0035485; GO:0046872; GO:0051539	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN276572_c0_g1	-9.174746092	2.01631103	8.987571511	0.00770914	0.0455143	Q6PDQ2	TRINITY_DN276572_c0_g1_i1	1.70E-11	Chromodomain-helicase-DNA-binding protein 4 (CHD-4) (EC 3.6.4.12)	chromatin organization [GO:0006325]; negative regulation of transcription by RNA polymerase II [GO:0000122]; terminal button organization [GO:0072553]	centrosome [GO:0005813]; cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; NuRD complex [GO:0016581]; protein-containing complex [GO:0032991]; protein-DNA complex [GO:0032993]	ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; histone deacetylase binding [GO:0042826]; metal ion binding [GO:0046872]; RNA polymerase II repressing transcription factor binding [GO:0001103]; transcription factor binding [GO:0008134]	GO:0000122; GO:0001103; GO:0003677; GO:0004386; GO:0005524; GO:0005634; GO:0005654; GO:0005737; GO:0005813; GO:0006325; GO:0008134; GO:0016581; GO:0032991; GO:0032993; GO:0042826; GO:0046872; GO:0072553	reviewed	Mus musculus (Mouse)
TRINITY_DN276582_c0_g1	7.870536733	3.116623101	9.992297839	0.00436111	0.028902862	Q963B7	TRINITY_DN276582_c0_g1_i1	1.40E-55	60S ribosomal protein L9	translation [GO:0006412]	ribosome [GO:0005840]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005840; GO:0006412; GO:0019843	reviewed	Spodoptera frugiperda (Fall armyworm)
TRINITY_DN276586_c0_g1	-6.871670147	8.180299797	38.69853735	2.38E-06	4.14E-05	Q8GUI4	TRINITY_DN276586_c0_g1_i1	2.80E-78	Uncharacterized GPI-anchored protein At1g61900		anchored component of membrane [GO:0031225]; anchored component of plasma membrane [GO:0046658]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]		GO:0005886; GO:0009506; GO:0031225; GO:0046658	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN276607_c0_g1	20.41660068	6.838034023	130.1783616	3.24E-10	9.72E-09	Q08DH3	TRINITY_DN276607_c0_g1_i1	7.30E-31	Probable tRNA methyltransferase 9B (Probable tRNA methyltransferase 9-like protein) (EC 2.1.1.-)	tRNA wobble uridine modification [GO:0002098]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	2-oxoglutarate-dependent dioxygenase activity [GO:0016706]; tRNA (uracil) methyltransferase activity [GO:0016300]; tRNA binding [GO:0000049]	GO:0000049; GO:0002098; GO:0005634; GO:0005737; GO:0016300; GO:0016706	reviewed	Bos taurus (Bovine)
TRINITY_DN276631_c0_g2	21.88878601	7.659341352	197.8806732	7.63E-12	2.95E-10	P97501	TRINITY_DN276631_c0_g2_i1	8.40E-49	Dimethylaniline monooxygenase [N-oxide-forming] 3 (EC 1.14.13.8) (EC 1.14.14.73) (Dimethylaniline oxidase 3) (Hepatic flavin-containing monooxygenase 3) (FMO 3) (Trimethylamine monooxygenase) (EC 1.14.13.148)	drug metabolic process [GO:0017144]	endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]	"amino acid binding [GO:0016597]; flavin adenine dinucleotide binding [GO:0050660]; monooxygenase activity [GO:0004497]; N,N-dimethylaniline monooxygenase activity [GO:0004499]; NADP binding [GO:0050661]; trimethylamine monooxygenase activity [GO:0034899]"	GO:0004497; GO:0004499; GO:0005789; GO:0016021; GO:0016597; GO:0017144; GO:0034899; GO:0043231; GO:0050660; GO:0050661	reviewed	Mus musculus (Mouse)
TRINITY_DN276843_c0_g1	-2.912007199	11.0482724	11.79403068	0.00225935	0.017351582	P26360	TRINITY_DN276843_c0_g1_i1	6.30E-29	"ATP synthase subunit gamma, mitochondrial (F-ATPase gamma subunit)"	ATP synthesis coupled proton transport [GO:0015986]	"mitochondrial inner membrane [GO:0005743]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]"	"proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]"	GO:0005743; GO:0015986; GO:0045261; GO:0046933	reviewed	Ipomoea batatas (Sweet potato) (Convolvulus batatas)
TRINITY_DN276910_c0_g1	16.75877733	4.452770775	50.94360417	1.65E-06	2.91E-05	Q0VD24	TRINITY_DN276910_c0_g1_i1	2.40E-27	Histone-lysine N-methyltransferase SETMAR (EC 2.1.1.43) (SET domain and mariner transposase fusion protein homolog)	histone H3-K36 methylation [GO:0010452]; histone H3-K4 methylation [GO:0051568]	chromosome [GO:0005694]; nucleus [GO:0005634]	histone methyltransferase activity (H3-K36 specific) [GO:0046975]; histone methyltransferase activity (H3-K4 specific) [GO:0042800]; zinc ion binding [GO:0008270]	GO:0005634; GO:0005694; GO:0008270; GO:0010452; GO:0042800; GO:0046975; GO:0051568	reviewed	Bos taurus (Bovine)
TRINITY_DN276910_c0_g2	20.36513085	6.913185767	134.0396582	2.51E-10	7.77E-09	Q0VD24	TRINITY_DN276910_c0_g2_i1	1.60E-27	Histone-lysine N-methyltransferase SETMAR (EC 2.1.1.43) (SET domain and mariner transposase fusion protein homolog)	histone H3-K36 methylation [GO:0010452]; histone H3-K4 methylation [GO:0051568]	chromosome [GO:0005694]; nucleus [GO:0005634]	histone methyltransferase activity (H3-K36 specific) [GO:0046975]; histone methyltransferase activity (H3-K4 specific) [GO:0042800]; zinc ion binding [GO:0008270]	GO:0005634; GO:0005694; GO:0008270; GO:0010452; GO:0042800; GO:0046975; GO:0051568	reviewed	Bos taurus (Bovine)
TRINITY_DN276935_c0_g1	8.590737598	3.023346347	14.06620888	0.001041274	0.009052649	P0A356	TRINITY_DN276935_c0_g1_i1	6.60E-17	Cold shock-like protein CspLA (CspL)		cytoplasm [GO:0005737]	DNA binding [GO:0003677]	GO:0003677; GO:0005737	reviewed	Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
TRINITY_DN276943_c0_g1	12.02733259	3.054808469	13.82960066	0.001702004	0.013541652	Q01085	TRINITY_DN276943_c0_g1_i1	4.80E-61	Nucleolysin TIAR (TIA-1-related protein)	apoptotic process [GO:0006915]; defense response [GO:0006952]; fibroblast growth factor receptor signaling pathway [GO:0008543]; germ cell development [GO:0007281]; positive regulation of cell population proliferation [GO:0008284]; regulation of transcription by RNA polymerase II [GO:0006357]; stem cell division [GO:0017145]	cytoplasm [GO:0005737]; cytoplasmic stress granule [GO:0010494]; lysosome [GO:0005764]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]	DNA binding [GO:0003677]; mRNA 3'-UTR AU-rich region binding [GO:0035925]; RNA binding [GO:0003723]	GO:0003677; GO:0003723; GO:0005634; GO:0005654; GO:0005737; GO:0005764; GO:0006357; GO:0006915; GO:0006952; GO:0007281; GO:0008284; GO:0008543; GO:0010494; GO:0017145; GO:0035925	reviewed	Homo sapiens (Human)
TRINITY_DN276974_c0_g1	17.1449858	5.850635774	72.8802247	4.16E-08	9.83E-07	Q9CA40	TRINITY_DN276974_c0_g1_i1	1.00E-07	"Nudix hydrolase 1 (AtNUDT1) (7,8-dihydro-8-oxoguanine-triphosphatase) (8-oxo-dGTP diphosphatase) (8-oxo-dGTPase) (EC 3.6.1.55) (Dihydroneopterin triphosphate diphosphatase) (EC 3.6.1.67) (Dihydroneopterin triphosphate pyrophosphohydrolase) (DHNTP pyrophosphohydrolase) (NADH pyrophosphatase) (EC 3.6.1.22)"	cellular response to DNA damage stimulus [GO:0006974]; dGTP catabolic process [GO:0006203]	cytosol [GO:0005829]	"8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity [GO:0035539]; 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity [GO:0008413]; dihydroneopterin triphosphate pyrophosphohydrolase activity [GO:0019177]; metal ion binding [GO:0046872]; NAD+ diphosphatase activity [GO:0000210]"	GO:0000210; GO:0005829; GO:0006203; GO:0006974; GO:0008413; GO:0019177; GO:0035539; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN276983_c0_g1	-8.393602738	7.977394443	56.27827874	1.26E-07	2.61E-06	F4JVI3	TRINITY_DN276983_c0_g1_i1	8.50E-76	"Transcription termination factor MTERF5, chloroplastic (Mitochondrial transcription termination factor 5) (Protein MTERF DEFECTIVE IN ARABIDOPSIS 1)"	"chloroplast organization [GO:0009658]; developmental process [GO:0032502]; DNA-templated transcription, termination [GO:0006353]; regulation of transcription, DNA-templated [GO:0006355]; response to abscisic acid [GO:0009737]; response to osmotic stress [GO:0006970]; response to salt stress [GO:0009651]"	chloroplast [GO:0009507]	double-stranded DNA binding [GO:0003690]	GO:0003690; GO:0006353; GO:0006355; GO:0006970; GO:0009507; GO:0009651; GO:0009658; GO:0009737; GO:0032502	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN276992_c0_g1	20.24616147	6.946590398	134.0099718	2.51E-10	7.77E-09	Q9VHS8	TRINITY_DN276992_c0_g1_i1	4.40E-140	Eukaryotic initiation factor 4A-III (eIF-4A-III) (eIF4A-III) (EC 3.6.4.13)	"chromatin organization [GO:0006325]; exon-exon junction complex assembly [GO:1903040]; mRNA splicing, via spliceosome [GO:0000398]; mRNA transport [GO:0051028]; pole plasm oskar mRNA localization [GO:0045451]; positive regulation of gene expression [GO:0010628]; RNA splicing [GO:0008380]"	catalytic step 2 spliceosome [GO:0071013]; nucleus [GO:0005634]; pole plasm [GO:0045495]; precatalytic spliceosome [GO:0071011]	ATP binding [GO:0005524]; helicase activity [GO:0004386]; RNA binding [GO:0003723]	GO:0000398; GO:0003723; GO:0004386; GO:0005524; GO:0005634; GO:0006325; GO:0008380; GO:0010628; GO:0045451; GO:0045495; GO:0051028; GO:0071011; GO:0071013; GO:1903040	reviewed	Drosophila melanogaster (Fruit fly)
TRINITY_DN277000_c0_g1	-5.664275467	6.97365236	20.5297375	0.000149393	0.001744797	Q94K73	TRINITY_DN277000_c0_g1_i1	1.40E-71	"Phenylalanine--tRNA ligase, chloroplastic/mitochondrial (EC 6.1.1.20) (Phenylalanyl-tRNA synthetase) (PheRS)"	phenylalanyl-tRNA aminoacylation [GO:0006432]	chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytoplasm [GO:0005737]; membrane [GO:0016020]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]	ATP binding [GO:0005524]; phenylalanine-tRNA ligase activity [GO:0004826]; tRNA binding [GO:0000049]	GO:0000049; GO:0004826; GO:0005524; GO:0005737; GO:0005739; GO:0005759; GO:0006432; GO:0009507; GO:0009570; GO:0016020	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN277003_c0_g1	-2.622132967	9.366258156	14.89523889	0.000795506	0.007241448	Q8W4A5	TRINITY_DN277003_c0_g1_i1	3.40E-146	"APO protein 2, chloroplastic (Accumulation of photosystem I protein 2) (Protein EMBRYO DEFECTIVE 1629)"		chloroplast [GO:0009507]	RNA binding [GO:0003723]	GO:0003723; GO:0009507	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN277043_c0_g1	19.15429532	8.451513765	162.686023	6.35E-12	2.49E-10	P40991	TRINITY_DN277043_c0_g1_i1	1.10E-93	25S rRNA (cytosine(2870)-C(5))-methyltransferase (EC 2.1.1.310) (Nucleolar protein 2)	"assembly of large subunit precursor of preribosome [GO:1902626]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; ribosomal large subunit biogenesis [GO:0042273]; rRNA base methylation [GO:0070475]; rRNA methylation [GO:0031167]"	"nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; preribosome, large subunit precursor [GO:0030687]"	RNA binding [GO:0003723]; rRNA (cytosine-C5-)-methyltransferase activity [GO:0009383]	GO:0000463; GO:0003723; GO:0005634; GO:0005654; GO:0005730; GO:0009383; GO:0030687; GO:0031167; GO:0042273; GO:0070475; GO:1902626	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN277043_c0_g2	7.120484241	1.43667782	11.47849955	0.003489961	0.02421845	P40991	TRINITY_DN277043_c0_g2_i1	7.00E-25	25S rRNA (cytosine(2870)-C(5))-methyltransferase (EC 2.1.1.310) (Nucleolar protein 2)	"assembly of large subunit precursor of preribosome [GO:1902626]; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; ribosomal large subunit biogenesis [GO:0042273]; rRNA base methylation [GO:0070475]; rRNA methylation [GO:0031167]"	"nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; preribosome, large subunit precursor [GO:0030687]"	RNA binding [GO:0003723]; rRNA (cytosine-C5-)-methyltransferase activity [GO:0009383]	GO:0000463; GO:0003723; GO:0005634; GO:0005654; GO:0005730; GO:0009383; GO:0030687; GO:0031167; GO:0042273; GO:0070475; GO:1902626	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN277047_c0_g1	-12.04694054	3.123247859	19.46840405	0.000334907	0.003443645	Q05627	TRINITY_DN277047_c0_g1_i1	3.80E-72	Uncharacterized protein Cbei_0202 (ORF1)					reviewed	Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium acetobutylicum)
TRINITY_DN277053_c0_g1	-9.795981701	8.880819855	58.75795577	8.78E-08	1.94E-06	Q9FLV9	TRINITY_DN277053_c0_g1_i1	8.40E-19	S-type anion channel SLAH3 (SLAC1-homolog protein 3)	cellular ion homeostasis [GO:0006873]; chloride transport [GO:0006821]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	voltage-gated anion channel activity [GO:0008308]	GO:0005886; GO:0006821; GO:0006873; GO:0008308; GO:0009414; GO:0009651; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN277209_c0_g1	10.08821913	2.90539246	13.5709269	0.001468337	0.011946968	P37891	TRINITY_DN277209_c0_g1_i3	1.90E-65	Serine carboxypeptidase 3 (EC 3.4.16.5) (Serine carboxypeptidase III)	proteolysis involved in cellular protein catabolic process [GO:0051603]	vacuole [GO:0005773]	serine-type carboxypeptidase activity [GO:0004185]	GO:0004185; GO:0005773; GO:0051603	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN277215_c0_g1	20.69366577	9.345446009	330.7209188	3.69E-15	1.14E-12	Q9A9I6	TRINITY_DN277215_c0_g1_i1	5.70E-49	Peptide methionine sulfoxide reductase MsrA 1 (Protein-methionine-S-oxide reductase 1) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase 1) (Peptide Met(O) reductase 1)	cellular protein modification process [GO:0006464]		peptide-methionine (S)-S-oxide reductase activity [GO:0008113]	GO:0006464; GO:0008113	reviewed	Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus)
TRINITY_DN277252_c0_g1	11.25082156	2.36803934	12.83959296	0.002285054	0.017505553	Q99LE6	TRINITY_DN277252_c0_g1_i2	2.20E-40	ATP-binding cassette sub-family F member 2		mitochondrion [GO:0005739]	ATPase activity [GO:0016887]; ATP binding [GO:0005524]	GO:0005524; GO:0005739; GO:0016887	reviewed	Mus musculus (Mouse)
TRINITY_DN277292_c0_g1	-4.657993234	9.244103691	28.26250213	2.13E-05	0.000297849	Q8GZ79	TRINITY_DN277292_c0_g1_i2	1.90E-68	"Protein TIC 20-I, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 20-I) (AtTIC20-I)"	protein import into chloroplast stroma [GO:0045037]	chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]	protein transmembrane transporter activity [GO:0008320]	GO:0008320; GO:0009706; GO:0016021; GO:0045037	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN277371_c0_g1	20.66210984	9.870806567	230.9102441	1.70E-13	1.14E-11	E9F8M3	TRINITY_DN277371_c0_g1_i1	1.60E-81	Reducing polyketide synthase swnK (EC 2.3.1.-) (Swainsonine biosynthesis gene cluster protein K)			ligase activity [GO:0016874]; methyltransferase activity [GO:0008168]; oxidoreductase activity [GO:0016491]; phosphopantetheine binding [GO:0031177]	GO:0008168; GO:0016491; GO:0016874; GO:0031177	reviewed	Metarhizium robertsii (strain ARSEF 23 / ATCC MYA-3075) (Metarhizium anisopliae (strain ARSEF 23))
TRINITY_DN277373_c0_g1	11.06419007	2.855356422	12.44038778	0.002581304	0.019344158	Q9U1Y5	TRINITY_DN277373_c0_g1_i1	1.10E-35	Serine/threonine-protein kinase chk-2 (EC 2.7.11.1) (Ce-cds-1) (Ce-chk-2)	cell division [GO:0051301]; DNA repair [GO:0006281]; mitotic DNA damage checkpoint [GO:0044773]; positive regulation of histone H3-K9 methylation [GO:0051574]; signal transduction in response to DNA damage [GO:0042770]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005524; GO:0005634; GO:0005737; GO:0006281; GO:0042770; GO:0044773; GO:0046872; GO:0051301; GO:0051574	reviewed	Caenorhabditis elegans
TRINITY_DN277393_c0_g1	23.97274159	8.358908573	256.5490961	1.06E-11	4.04E-10	Q53P98	TRINITY_DN277393_c0_g1_i1	2.90E-24	Signal peptide peptidase-like 2 (OsSPPL2) (EC 3.4.23.-)	membrane protein proteolysis [GO:0033619]	endosome membrane [GO:0010008]; Golgi-associated vesicle membrane [GO:0030660]; integral component of cytoplasmic side of endoplasmic reticulum membrane [GO:0071458]; integral component of lumenal side of endoplasmic reticulum membrane [GO:0071556]; lysosomal membrane [GO:0005765]	"aspartic endopeptidase activity, intramembrane cleaving [GO:0042500]"	GO:0005765; GO:0010008; GO:0030660; GO:0033619; GO:0042500; GO:0071458; GO:0071556	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN277394_c0_g1	15.09669728	3.725164171	38.01163146	1.03E-05	0.000157588	O14233	TRINITY_DN277394_c0_g1_i1	3.60E-20	mRNA 3'-end-processing protein rna14	mRNA cleavage [GO:0006379]; mRNA polyadenylation [GO:0006378]; regulation of mRNA 3'-end processing [GO:0031440]; RNA 3'-end processing [GO:0031123]	mitochondrion [GO:0005739]; mRNA cleavage and polyadenylation specificity factor complex [GO:0005847]; nucleus [GO:0005634]	mRNA binding [GO:0003729]	GO:0003729; GO:0005634; GO:0005739; GO:0005847; GO:0006378; GO:0006379; GO:0031123; GO:0031440	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN277395_c0_g1	-4.573523287	6.392789748	12.94690358	0.001514352	0.012269419	O81078	TRINITY_DN277395_c0_g1_i1	5.30E-27	Glutamate receptor 2.9 (Ligand-gated ion channel 2.9)	calcium ion transport [GO:0006816]; calcium-mediated signaling [GO:0019722]; cellular response to amino acid stimulus [GO:0071230]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	calcium channel activity [GO:0005262]; glutamate receptor activity [GO:0008066]; ionotropic glutamate receptor activity [GO:0004970]	GO:0004970; GO:0005262; GO:0005886; GO:0006816; GO:0008066; GO:0016021; GO:0019722; GO:0071230	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN277915_c0_g1	21.71370551	12.62033781	348.3331315	2.11E-15	8.15E-13	O94489	TRINITY_DN277915_c0_g1_i1	5.10E-209	Elongation factor 3 (EF-3)	cytoplasmic translational elongation [GO:0002182]	cytosol [GO:0005829]	ATPase activity [GO:0016887]; ATP binding [GO:0005524]; translation elongation factor activity [GO:0003746]	GO:0002182; GO:0003746; GO:0005524; GO:0005829; GO:0016887	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN277933_c0_g1	-4.906696468	7.937117515	24.38279978	5.42E-05	0.000714007	Q5N712	TRINITY_DN277933_c0_g1_i1	3.80E-69	Lysine-specific demethylase JMJ705 (EC 1.14.11.-) (Jumonji domain-containing protein 705) (Lysine-specific histone demethylase JMJ705) (Protein JUMONJI 705)	"chromatin remodeling [GO:0006338]; defense response [GO:0006952]; positive regulation of gene expression, epigenetic [GO:0045815]; positive regulation of growth rate [GO:0040010]"	histone methyltransferase complex [GO:0035097]; nucleus [GO:0005634]	dioxygenase activity [GO:0051213]; histone demethylase activity [GO:0032452]; histone demethylase activity (H3-K27 specific) [GO:0071558]; histone demethylase activity (H3-trimethyl-K4 specific) [GO:0034647]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]	GO:0003676; GO:0005634; GO:0006338; GO:0006952; GO:0032452; GO:0034647; GO:0035097; GO:0040010; GO:0045815; GO:0046872; GO:0051213; GO:0071558	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN278325_c0_g1	11.32557731	2.591205211	12.65482872	0.002417131	0.018291	Q92359	TRINITY_DN278325_c0_g1_i1	2.90E-11	Pumilio domain-containing protein C6G9.14	"nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [GO:0000288]"	cytosol [GO:0005829]	mRNA binding [GO:0003729]	GO:0000288; GO:0003729; GO:0005829	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN278343_c0_g1	-10.31717464	5.538898583	30.450679	1.30E-05	0.00019376	A7S6A5	TRINITY_DN278343_c0_g1_i2	7.60E-87	Protein SDA1 homolog (SDA1 domain-containing protein 1 homolog)	actin cytoskeleton organization [GO:0030036]; ribosomal large subunit biogenesis [GO:0042273]; ribosomal large subunit export from nucleus [GO:0000055]	nucleolus [GO:0005730]; nucleus [GO:0005634]		GO:0000055; GO:0005634; GO:0005730; GO:0030036; GO:0042273	reviewed	Nematostella vectensis (Starlet sea anemone)
TRINITY_DN278380_c0_g1	3.977490385	7.606782736	18.79962325	0.000243131	0.002577024	Q9XGY4	TRINITY_DN278380_c0_g1_i1	1.10E-23	Mitochondrial import inner membrane translocase subunit TIM8	chaperone-mediated protein transport [GO:0072321]	mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]	metal ion binding [GO:0046872]	GO:0005739; GO:0005758; GO:0046872; GO:0072321	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN278387_c0_g1	-6.122848066	9.416855657	37.49243032	3.01E-06	5.11E-05	Q9CAP8	TRINITY_DN278387_c0_g1_i1	4.10E-11	"Long chain acyl-CoA synthetase 9, chloroplastic (EC 6.2.1.3)"	fatty acid metabolic process [GO:0006631]	chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; membrane [GO:0016020]; plastid [GO:0009536]	acyl-CoA ligase activity [GO:0003996]; ATP binding [GO:0005524]; decanoate-CoA ligase activity [GO:0102391]; long-chain fatty acid-CoA ligase activity [GO:0004467]	GO:0003996; GO:0004467; GO:0005524; GO:0006631; GO:0009507; GO:0009536; GO:0009941; GO:0016020; GO:0102391	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN278824_c0_g1	-8.532015911	6.861480087	38.13325525	2.65E-06	4.54E-05	P0ABU3	TRINITY_DN278824_c0_g1_i7	6.30E-18	Ribosome-binding ATPase YchF			ATPase activity [GO:0016887]; ATP binding [GO:0005524]; GTP binding [GO:0005525]; metal ion binding [GO:0046872]; ribosomal large subunit binding [GO:0043023]; ribosome binding [GO:0043022]	GO:0005524; GO:0005525; GO:0016887; GO:0043022; GO:0043023; GO:0046872	reviewed	Escherichia coli O157:H7
TRINITY_DN278923_c1_g1	11.12537267	5.176962137	24.02118671	5.94E-05	0.000769186	Q8VZQ2	TRINITY_DN278923_c1_g1_i1	2.70E-16	Transcription factor MYB61 (Myb-related protein 61) (AtMYB61)	cell differentiation [GO:0030154]; phloem or xylem histogenesis [GO:0010087]; regulation of stomatal movement [GO:0010119]; response to auxin [GO:0009733]; root development [GO:0048364]; seed coat development [GO:0010214]; xylem development [GO:0010089]	nucleus [GO:0005634]	DNA-binding transcription factor activity [GO:0003700]; sequence-specific DNA binding [GO:0043565]; transcription regulatory region DNA binding [GO:0044212]	GO:0003700; GO:0005634; GO:0009733; GO:0010087; GO:0010089; GO:0010119; GO:0010214; GO:0030154; GO:0043565; GO:0044212; GO:0048364	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN278928_c0_g1	11.98799353	2.613726442	13.6953276	0.001770277	0.013941491	P34574	TRINITY_DN278928_c0_g1_i1	8.80E-65	Probable clathrin heavy chain 1	apical protein localization [GO:0045176]; cortical actin cytoskeleton organization [GO:0030866]; determination of adult lifespan [GO:0008340]; embryo development ending in birth or egg hatching [GO:0009792]; intracellular protein transport [GO:0006886]; positive regulation of clathrin-dependent endocytosis [GO:2000370]; protein localization [GO:0008104]; receptor-mediated endocytosis [GO:0006898]	apical plasma membrane [GO:0016324]; cell cortex [GO:0005938]; clathrin-coated endocytic vesicle [GO:0045334]; clathrin coat of coated pit [GO:0030132]; clathrin coat of trans-Golgi network vesicle [GO:0030130]; clathrin complex [GO:0071439]; cytoplasm [GO:0005737]; cytoplasmic side of plasma membrane [GO:0009898]; cytoplasmic vesicle [GO:0031410]; endocytic vesicle [GO:0030139]; mitotic spindle [GO:0072686]; plasma membrane [GO:0005886]	clathrin light chain binding [GO:0032051]; structural molecule activity [GO:0005198]	GO:0005198; GO:0005737; GO:0005886; GO:0005938; GO:0006886; GO:0006898; GO:0008104; GO:0008340; GO:0009792; GO:0009898; GO:0016324; GO:0030130; GO:0030132; GO:0030139; GO:0030866; GO:0031410; GO:0032051; GO:0045176; GO:0045334; GO:0071439; GO:0072686; GO:2000370	reviewed	Caenorhabditis elegans
TRINITY_DN278965_c0_g1	12.45010467	2.656409104	14.14668869	0.001552212	0.012543329	Q20065	TRINITY_DN278965_c0_g1_i1	1.30E-34	"Prolyl 4-hydroxylase subunit alpha-2 (4-PH alpha-2) (EC 1.14.11.2) (Procollagen-proline,2-oxoglutarate-4-dioxygenase subunit alpha-2)"	macromolecule modification [GO:0043412]; oxidation-reduction process [GO:0055114]; peptidyl-proline hydroxylation to 4-hydroxy-L-proline [GO:0018401]	endoplasmic reticulum [GO:0005783]; endoplasmic reticulum lumen [GO:0005788]	"iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [GO:0016702]; peptidyl-proline 4-dioxygenase activity [GO:0031545]; procollagen-proline 4-dioxygenase activity [GO:0004656]"	GO:0004656; GO:0005506; GO:0005783; GO:0005788; GO:0016702; GO:0018401; GO:0031418; GO:0031545; GO:0043412; GO:0055114	reviewed	Caenorhabditis elegans
TRINITY_DN278966_c0_g1	-2.877033879	9.938206881	8.577731215	0.007542096	0.045060345	Q40478	TRINITY_DN278966_c0_g1_i1	3.30E-32	Ethylene-responsive transcription factor 5 (Ethylene-responsive element-binding factor 4) (EREBP-4) (Ethylene-responsive element-binding factor 5 homolog) (NtERF4)	defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]	nucleus [GO:0005634]	DNA binding [GO:0003677]; DNA-binding transcription factor activity [GO:0003700]	GO:0003677; GO:0003700; GO:0005634; GO:0006952; GO:0009873	reviewed	Nicotiana tabacum (Common tobacco)
TRINITY_DN278966_c0_g2	-2.808891805	7.944445303	8.424551763	0.008017805	0.046998306	Q40478	TRINITY_DN278966_c0_g2_i1	3.30E-32	Ethylene-responsive transcription factor 5 (Ethylene-responsive element-binding factor 4) (EREBP-4) (Ethylene-responsive element-binding factor 5 homolog) (NtERF4)	defense response [GO:0006952]; ethylene-activated signaling pathway [GO:0009873]	nucleus [GO:0005634]	DNA binding [GO:0003677]; DNA-binding transcription factor activity [GO:0003700]	GO:0003677; GO:0003700; GO:0005634; GO:0006952; GO:0009873	reviewed	Nicotiana tabacum (Common tobacco)
TRINITY_DN292320_c0_g2	21.93640015	11.77093032	298.8436048	1.10E-14	1.91E-12	P49691	TRINITY_DN292320_c0_g2_i1	5.50E-107	60S ribosomal protein L4-2 (L1)	response to cytokinin [GO:0009735]; translation [GO:0006412]	chloroplast [GO:0009507]; cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]; polysomal ribosome [GO:0042788]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]	mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]	GO:0003729; GO:0003735; GO:0005730; GO:0005773; GO:0005774; GO:0005829; GO:0005886; GO:0006412; GO:0009506; GO:0009507; GO:0009735; GO:0016020; GO:0022625; GO:0022626; GO:0042788	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN292320_c0_g4	22.87731984	10.9792527	281.7738922	2.06E-14	2.46E-12	O14734	TRINITY_DN292320_c0_g4_i1	2.10E-53	Acyl-coenzyme A thioesterase 8 (Acyl-CoA thioesterase 8) (EC 3.1.2.1) (EC 3.1.2.11) (EC 3.1.2.2) (EC 3.1.2.3) (EC 3.1.2.5) (Choloyl-coenzyme A thioesterase) (EC 3.1.2.27) (HIV-Nef-associated acyl-CoA thioesterase) (Peroxisomal acyl-CoA thioesterase 2) (PTE-2) (Peroxisomal acyl-coenzyme A thioester hydrolase 1) (PTE-1) (Peroxisomal long-chain acyl-CoA thioesterase 1) (Thioesterase II) (hACTE-III) (hACTEIII) (hTE)	acyl-CoA metabolic process [GO:0006637]; alpha-linolenic acid metabolic process [GO:0036109]; bile acid biosynthetic process [GO:0006699]; dicarboxylic acid catabolic process [GO:0043649]; fatty acid beta-oxidation using acyl-CoA oxidase [GO:0033540]; fatty acid catabolic process [GO:0009062]; negative regulation of CD4 biosynthetic process [GO:0045225]; peroxisome fission [GO:0016559]; protein targeting to peroxisome [GO:0006625]; viral process [GO:0016032]	cytosol [GO:0005829]; peroxisomal matrix [GO:0005782]	acetoacetyl-CoA hydrolase activity [GO:0047603]; acetyl-CoA hydrolase activity [GO:0003986]; acyl-CoA hydrolase activity [GO:0047617]; carboxylic ester hydrolase activity [GO:0052689]; choloyl-CoA hydrolase activity [GO:0033882]; CoA hydrolase activity [GO:0016289]; hydroxymethylglutaryl-CoA hydrolase activity [GO:0047994]; medium-chain acyl-CoA hydrolase activity [GO:0052815]; myristoyl-CoA hydrolase activity [GO:0102991]; palmitoyl-CoA hydrolase activity [GO:0016290]; signaling receptor binding [GO:0005102]; succinyl-CoA hydrolase activity [GO:0004778]	GO:0003986; GO:0004778; GO:0005102; GO:0005782; GO:0005829; GO:0006625; GO:0006637; GO:0006699; GO:0009062; GO:0016032; GO:0016289; GO:0016290; GO:0016559; GO:0033540; GO:0033882; GO:0036109; GO:0043649; GO:0045225; GO:0047603; GO:0047617; GO:0047994; GO:0052689; GO:0052815; GO:0102991	reviewed	Homo sapiens (Human)
TRINITY_DN292331_c0_g1	19.9484273	7.132838754	116.7057909	8.35E-10	2.37E-08	O43290	TRINITY_DN292331_c0_g1_i1	1.30E-09	U4/U6.U5 tri-snRNP-associated protein 1 (SNU66 homolog) (hSnu66) (Squamous cell carcinoma antigen recognized by T-cells 1) (SART-1) (hSART-1) (U4/U6.U5 tri-snRNP-associated 110 kDa protein) (allergen Hom s 1)	"maturation of 5S rRNA [GO:0000481]; mRNA cis splicing, via spliceosome [GO:0045292]; mRNA splicing, via spliceosome [GO:0000398]; positive regulation of cytotoxic T cell differentiation [GO:0045585]; spliceosomal snRNP assembly [GO:0000387]"	Cajal body [GO:0015030]; catalytic step 2 spliceosome [GO:0071013]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; Golgi apparatus [GO:0005794]; nuclear speck [GO:0016607]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; U2-type precatalytic spliceosome [GO:0071005]; U4/U6 x U5 tri-snRNP complex [GO:0046540]	RNA binding [GO:0003723]	GO:0000387; GO:0000398; GO:0000481; GO:0003723; GO:0005634; GO:0005654; GO:0005737; GO:0005794; GO:0005829; GO:0015030; GO:0016607; GO:0045292; GO:0045585; GO:0046540; GO:0071005; GO:0071013	reviewed	Homo sapiens (Human)
TRINITY_DN292335_c2_g3	9.678438416	2.905111103	10.74052973	0.003301976	0.023332456	P28748	TRINITY_DN292335_c2_g3_i1	3.20E-86	GTP-binding nuclear protein spi1	negative regulation of G2/M transition of mitotic cell cycle [GO:0010972]; poly(A)+ mRNA export from nucleus [GO:0016973]; protein import into nucleus [GO:0006606]; signaling [GO:0023052]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; Ran guanyl-nucleotide exchange factor activity [GO:0005087]	GO:0003924; GO:0005087; GO:0005525; GO:0005634; GO:0005737; GO:0005829; GO:0006606; GO:0010972; GO:0016973; GO:0023052	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN292371_c5_g1	5.57061451	3.852636937	8.307810427	0.008402561	0.048700237	Q9I8F9	TRINITY_DN292371_c5_g1_i2	2.20E-136	Heat shock 70 kDa protein 1 (HSP70-1)	cellular response to heat [GO:0034605]; cellular response to unfolded protein [GO:0034620]; chaperone cofactor-dependent protein refolding [GO:0051085]; protein refolding [GO:0042026]; response to unfolded protein [GO:0006986]	cytoplasm [GO:0005737]; cytosol [GO:0005829]	"ATPase activity [GO:0016887]; ATPase activity, coupled [GO:0042623]; ATP binding [GO:0005524]; heat shock protein binding [GO:0031072]; misfolded protein binding [GO:0051787]; protein folding chaperone [GO:0044183]; unfolded protein binding [GO:0051082]"	GO:0005524; GO:0005737; GO:0005829; GO:0006986; GO:0016887; GO:0031072; GO:0034605; GO:0034620; GO:0042026; GO:0042623; GO:0044183; GO:0051082; GO:0051085; GO:0051787	reviewed	Oryzias latipes (Japanese rice fish) (Japanese killifish)
TRINITY_DN292378_c0_g2	-12.69977637	8.681514597	99.89076291	7.61E-10	2.18E-08	Q9SK55	TRINITY_DN292378_c0_g2_i1	6.60E-55	Transcription factor JUNGBRUNNEN 1 (NAC domain-containing protein 42) (ANAC042)	anthocyanin-containing compound biosynthetic process [GO:0009718]; camalexin biosynthetic process [GO:0010120]; hyperosmotic salinity response [GO:0042538]; leaf senescence [GO:0010150]; negative regulation of leaf senescence [GO:1900056]; proline biosynthetic process [GO:0006561]; trehalose biosynthetic process [GO:0005992]	nucleus [GO:0005634]	DNA binding [GO:0003677]; DNA-binding transcription factor activity [GO:0003700]	GO:0003677; GO:0003700; GO:0005634; GO:0005992; GO:0006561; GO:0009718; GO:0010120; GO:0010150; GO:0042538; GO:1900056	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN292382_c1_g2	-7.007281594	7.241219538	34.11550483	5.92E-06	9.64E-05	Q9ZUU4	TRINITY_DN292382_c1_g2_i1	2.00E-68	"RNA-binding protein CP29B, chloroplastic (Ribonucleoprotein At2g37220)"	chloroplast rRNA processing [GO:1901259]; innate immune response [GO:0045087]; mRNA processing [GO:0006397]; response to abscisic acid [GO:0009737]; response to cold [GO:0009409]	chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; ribonucleoprotein complex [GO:1990904]; stromule [GO:0010319]; thylakoid [GO:0009579]	mRNA binding [GO:0003729]; poly(U) RNA binding [GO:0008266]; RNA binding [GO:0003723]	GO:0003723; GO:0003729; GO:0006397; GO:0008266; GO:0009409; GO:0009507; GO:0009534; GO:0009535; GO:0009570; GO:0009579; GO:0009737; GO:0009941; GO:0010319; GO:0045087; GO:1901259; GO:1990904	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN292383_c0_g1	-4.987084363	9.569316437	32.09339354	9.06E-06	0.000141586	O64888	TRINITY_DN292383_c0_g1_i6	1.00E-164	"Ribose-phosphate pyrophosphokinase 5, chloroplastic (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthase 5)"	5-phosphoribose 1-diphosphate biosynthetic process [GO:0006015]; nucleoside metabolic process [GO:0009116]; nucleotide biosynthetic process [GO:0009165]; purine nucleotide biosynthetic process [GO:0006164]; ribonucleoside monophosphate biosynthetic process [GO:0009156]	chloroplast [GO:0009507]; cytoplasm [GO:0005737]; plastid [GO:0009536]; ribose phosphate diphosphokinase complex [GO:0002189]	ATP binding [GO:0005524]; kinase activity [GO:0016301]; magnesium ion binding [GO:0000287]; ribose phosphate diphosphokinase activity [GO:0004749]	GO:0000287; GO:0002189; GO:0004749; GO:0005524; GO:0005737; GO:0006015; GO:0006164; GO:0009116; GO:0009156; GO:0009165; GO:0009507; GO:0009536; GO:0016301	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN292384_c0_g1	23.88819578	8.569279861	306.7027688	1.30E-13	9.15E-12	Q09818	TRINITY_DN292384_c0_g1_i1	3.00E-42	Putative general negative regulator of transcription C16C9.04c	negative regulation of gene expression [GO:0010629]; nuclear-transcribed mRNA poly(A) tail shortening [GO:0000289]; protein ubiquitination [GO:0016567]	CCR4-NOT complex [GO:0030014]; CCR4-NOT core complex [GO:0030015]; cytosol [GO:0005829]; nucleus [GO:0005634]	metal ion binding [GO:0046872]; RNA binding [GO:0003723]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin-protein transferase activity [GO:0004842]	GO:0000289; GO:0003723; GO:0004842; GO:0005634; GO:0005829; GO:0010629; GO:0016567; GO:0030014; GO:0030015; GO:0046872; GO:0061630	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN292387_c4_g1	3.031642043	10.30848938	22.47224174	8.86E-05	0.001110114	B8B7S5	TRINITY_DN292387_c4_g1_i1	2.20E-69	Protein BZR1 homolog 1 (OsBZR1) (Protein BRASSINAZOLE-RESISTANT 1 homolog 1)	"brassinosteroid mediated signaling pathway [GO:0009742]; regulation of growth [GO:0040008]; transcription, DNA-templated [GO:0006351]"	cytoplasm [GO:0005737]; nucleus [GO:0005634]	DNA binding [GO:0003677]; DNA-binding transcription factor activity [GO:0003700]	GO:0003677; GO:0003700; GO:0005634; GO:0005737; GO:0006351; GO:0009742; GO:0040008	reviewed	Oryza sativa subsp. indica (Rice)
TRINITY_DN292396_c0_g1	-6.013829233	8.154494804	39.52134537	2.04E-06	3.56E-05	Q38967	TRINITY_DN292396_c0_g1_i2	7.40E-139	Amino acid permease 2 (Amino acid transporter AAP2)	acidic amino acid transport [GO:0015800]; amino acid transmembrane transport [GO:0003333]; amino acid transport [GO:0006865]; neutral amino acid transport [GO:0015804]; phloem loading [GO:0110126]	integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]	amino acid transmembrane transporter activity [GO:0015171]; symporter activity [GO:0015293]	GO:0003333; GO:0005886; GO:0005887; GO:0006865; GO:0015171; GO:0015293; GO:0015800; GO:0015804; GO:0110126	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN292396_c0_g2	-9.973727584	2.78735859	15.28735695	0.000803809	0.007274233	Q9FF99	TRINITY_DN292396_c0_g2_i1	1.60E-17	Probable amino acid permease 7 (Amino acid transporter AAP7)	amino acid transmembrane transport [GO:0003333]; amino acid transport [GO:0006865]	integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]	amino acid transmembrane transporter activity [GO:0015171]; symporter activity [GO:0015293]	GO:0003333; GO:0005886; GO:0006865; GO:0015171; GO:0015293; GO:0016020; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN292396_c0_g3	-8.404944981	3.290547683	12.38442716	0.001837297	0.014359683	Q8GUM3	TRINITY_DN292396_c0_g3_i1	2.70E-28	Amino acid permease 5 (Amino acid transporter AAP5)	amino acid transmembrane transport [GO:0003333]; arginine transport [GO:0015809]; basic amino acid transport [GO:0015802]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	amino acid transmembrane transporter activity [GO:0015171]; basic amino acid transmembrane transporter activity [GO:0015174]; symporter activity [GO:0015293]	GO:0003333; GO:0005886; GO:0015171; GO:0015174; GO:0015293; GO:0015802; GO:0015809; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN292396_c0_g4	-9.317464252	1.961822935	12.05212621	0.002717245	0.020119317	Q38967	TRINITY_DN292396_c0_g4_i1	8.60E-23	Amino acid permease 2 (Amino acid transporter AAP2)	acidic amino acid transport [GO:0015800]; amino acid transmembrane transport [GO:0003333]; amino acid transport [GO:0006865]; neutral amino acid transport [GO:0015804]; phloem loading [GO:0110126]	integral component of plasma membrane [GO:0005887]; plasma membrane [GO:0005886]	amino acid transmembrane transporter activity [GO:0015171]; symporter activity [GO:0015293]	GO:0003333; GO:0005886; GO:0005887; GO:0006865; GO:0015171; GO:0015293; GO:0015800; GO:0015804; GO:0110126	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN292660_c0_g1	19.96159802	5.991421834	96.28029239	2.01E-08	5.18E-07	F4I9T0	TRINITY_DN292660_c0_g1_i1	7.60E-84	BEACH domain-containing protein B (BEACH-domain homolog B)		mitochondrion [GO:0005739]		GO:0005739	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN292909_c0_g1	-5.535055415	9.095179746	52.84627181	2.11E-07	4.25E-06	Q8GT66	TRINITY_DN292909_c0_g1_i1	1.00E-21	"Protein TIC 40, chloroplastic (Translocon at the inner envelope membrane of chloroplasts 40) (PsTIC40)"	protein transport [GO:0015031]	chloroplast inner membrane [GO:0009706]; integral component of membrane [GO:0016021]		GO:0009706; GO:0015031; GO:0016021	reviewed	Pisum sativum (Garden pea)
TRINITY_DN292914_c1_g1	3.819653988	14.42082589	21.49092692	0.000115004	0.001384968	P04712	TRINITY_DN292914_c1_g1_i1	8.30E-208	Sucrose synthase 1 (EC 2.4.1.13) (Shrunken-1) (Sucrose-UDP glucosyltransferase 1)	protein tetramerization [GO:0051262]; response to anoxia [GO:0034059]; seed maturation [GO:0010431]; sucrose metabolic process [GO:0005985]		sucrose synthase activity [GO:0016157]	GO:0005985; GO:0010431; GO:0016157; GO:0034059; GO:0051262	reviewed	Zea mays (Maize)
TRINITY_DN292950_c0_g1	-10.98123625	9.20469757	61.70736206	5.80E-08	1.34E-06	Q9ZT94	TRINITY_DN292950_c0_g1_i1	1.90E-09	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]	DNA integration [GO:0015074]; DNA recombination [GO:0006310]	retrotransposon nucleocapsid [GO:0000943]	aspartic-type endopeptidase activity [GO:0004190]; endonuclease activity [GO:0004519]; metal ion binding [GO:0046872]; nucleic acid binding [GO:0003676]; RNA-directed DNA polymerase activity [GO:0003964]	GO:0000943; GO:0003676; GO:0003964; GO:0004190; GO:0004519; GO:0006310; GO:0015074; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN292951_c0_g1	-3.180473321	7.110462652	8.280351053	0.008495989	0.049149695	Q6NRK1	TRINITY_DN292951_c0_g1_i1	9.00E-12	Afadin- and alpha-actinin-binding protein A (ADIP-A) (Afadin DIL domain-interacting protein A) (SSX2-interacting protein A) (XSSX2IP)	cell adhesion [GO:0007155]; centrosome cycle [GO:0007098]	adherens junction [GO:0005912]; centriolar satellite [GO:0034451]; microtubule [GO:0005874]	microtubule minus-end binding [GO:0051011]	GO:0005874; GO:0005912; GO:0007098; GO:0007155; GO:0034451; GO:0051011	reviewed	Xenopus laevis (African clawed frog)
TRINITY_DN292961_c0_g1	-4.180344597	9.518416092	31.03324985	1.14E-05	0.000172932	O22207	TRINITY_DN292961_c0_g1_i1	2.50E-220	Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.4.19.12) (Deubiquitinating enzyme 5) (AtUBP5) (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5)	protein deubiquitination [GO:0016579]; ubiquitin-dependent protein catabolic process [GO:0006511]	nucleus [GO:0005634]	thiol-dependent ubiquitin-specific protease activity [GO:0004843]	GO:0004843; GO:0005634; GO:0006511; GO:0016579	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN292970_c0_g1	20.89219252	8.298206044	229.5356288	1.81E-13	1.19E-11	Q8VEG4	TRINITY_DN292970_c0_g1_i1	7.00E-48	Exonuclease 3'-5' domain-containing protein 2 (EC 3.1.11.1) (Exonuclease 3'-5' domain-like-containing protein 2)	DNA double-strand break processing [GO:0000729]; double-strand break repair [GO:0006302]; double-strand break repair via homologous recombination [GO:0000724]; nucleic acid phosphodiester bond hydrolysis [GO:0090305]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	3'-5' exonuclease activity [GO:0008408]; exodeoxyribonuclease I activity [GO:0008852]; nucleic acid binding [GO:0003676]; single-stranded DNA 3'-5' exodeoxyribonuclease activity [GO:0008310]	GO:0000724; GO:0000729; GO:0003676; GO:0005634; GO:0005737; GO:0006302; GO:0008310; GO:0008408; GO:0008852; GO:0090305	reviewed	Mus musculus (Mouse)
TRINITY_DN292970_c0_g2	11.90882913	2.519347589	23.07530614	0.000164745	0.001902558	Q8VEG4	TRINITY_DN292970_c0_g2_i1	9.00E-30	Exonuclease 3'-5' domain-containing protein 2 (EC 3.1.11.1) (Exonuclease 3'-5' domain-like-containing protein 2)	DNA double-strand break processing [GO:0000729]; double-strand break repair [GO:0006302]; double-strand break repair via homologous recombination [GO:0000724]; nucleic acid phosphodiester bond hydrolysis [GO:0090305]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	3'-5' exonuclease activity [GO:0008408]; exodeoxyribonuclease I activity [GO:0008852]; nucleic acid binding [GO:0003676]; single-stranded DNA 3'-5' exodeoxyribonuclease activity [GO:0008310]	GO:0000724; GO:0000729; GO:0003676; GO:0005634; GO:0005737; GO:0006302; GO:0008310; GO:0008408; GO:0008852; GO:0090305	reviewed	Mus musculus (Mouse)
TRINITY_DN292973_c0_g1	-4.668651576	6.972378712	14.72586681	0.00084003	0.007579864	Q6Z382	TRINITY_DN292973_c0_g1_i1	0	Coatomer subunit gamma-2 (Gamma-2-coat protein) (Gamma-2-COP)	endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein secretion [GO:0009306]	COPI vesicle coat [GO:0030126]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; membrane [GO:0016020]	structural molecule activity [GO:0005198]	GO:0000139; GO:0005198; GO:0005783; GO:0005793; GO:0005794; GO:0006886; GO:0006888; GO:0006891; GO:0009306; GO:0016020; GO:0030126	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN292973_c0_g2	-2.154225953	10.29584491	8.381301906	0.008158036	0.047639851	Q0WW26	TRINITY_DN292973_c0_g2_i1	3.20E-10	Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)	endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; intra-Golgi vesicle-mediated transport [GO:0006891]; protein secretion [GO:0009306]	chloroplast [GO:0009507]; COPI vesicle coat [GO:0030126]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]	structural molecule activity [GO:0005198]	GO:0000139; GO:0005198; GO:0005783; GO:0005793; GO:0005794; GO:0005829; GO:0005886; GO:0006886; GO:0006888; GO:0006891; GO:0009306; GO:0009506; GO:0009507; GO:0016020; GO:0030126	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN292975_c0_g1	19.09551494	5.739278577	81.51401803	6.67E-08	1.52E-06	B1ZSW8	TRINITY_DN292975_c0_g1_i1	1.30E-96	Aspartate--tRNA(Asp/Asn) ligase (EC 6.1.1.23) (Aspartyl-tRNA synthetase) (AspRS) (Non-discriminating aspartyl-tRNA synthetase) (ND-AspRS)	aspartyl-tRNA aminoacylation [GO:0006422]	cytoplasm [GO:0005737]	aspartate-tRNA(Asn) ligase activity [GO:0050560]; aspartate-tRNA ligase activity [GO:0004815]; ATP binding [GO:0005524]; nucleic acid binding [GO:0003676]	GO:0003676; GO:0004815; GO:0005524; GO:0005737; GO:0006422; GO:0050560	reviewed	Opitutus terrae (strain DSM 11246 / JCM 15787 / PB90-1)
TRINITY_DN292978_c1_g13	16.84806431	4.675951408	19.73746369	0.000355476	0.003643038	P08428	TRINITY_DN292978_c1_g13_i1	1.20E-111	"ATP synthase subunit alpha, mitochondrial (ATP synthase F1 subunit alpha)"	ATP synthesis coupled proton transport [GO:0015986]	"mitochondrial inner membrane [GO:0005743]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]"	"ATP binding [GO:0005524]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]"	GO:0005524; GO:0005743; GO:0015986; GO:0045261; GO:0046933	reviewed	Xenopus laevis (African clawed frog)
TRINITY_DN292979_c1_g2	-6.735510031	8.071005557	29.27685354	1.69E-05	0.000244962	B9DG24	TRINITY_DN292979_c1_g2_i2	4.70E-26	Transcription initiation factor TFIID subunit 7 (TBP-associated factor 7) (AtTAF7)	regulation of transcription by RNA polymerase II [GO:0006357]; RNA polymerase II preinitiation complex assembly [GO:0051123]	transcription factor TFIID complex [GO:0005669]	histone acetyltransferase binding [GO:0035035]; transcription coactivator activity [GO:0003713]; transcription factor binding [GO:0008134]; transcription regulatory region DNA binding [GO:0044212]	GO:0003713; GO:0005669; GO:0006357; GO:0008134; GO:0035035; GO:0044212; GO:0051123	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN292979_c1_g6	-4.262243247	6.131484062	9.635071169	0.004994163	0.031935814	Q9ZUM2	TRINITY_DN292979_c1_g6_i5	2.30E-06	Tobamovirus multiplication protein 3 (AtTOM3)	viral replication complex formation and maintenance [GO:0046786]	integral component of membrane [GO:0016021]; plant-type vacuole membrane [GO:0009705]		GO:0009705; GO:0016021; GO:0046786	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN292998_c2_g1	21.31444703	10.79440381	203.427665	6.40E-13	3.60E-11	O65731	TRINITY_DN292998_c2_g1_i2	3.20E-64	40S ribosomal protein S5 (Fragment)	translation [GO:0006412]	small ribosomal subunit [GO:0015935]	RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]	GO:0003723; GO:0003735; GO:0006412; GO:0015935	reviewed	Cicer arietinum (Chickpea) (Garbanzo)
TRINITY_DN292998_c5_g6	15.94884226	5.164173859	20.229886	0.000219146	0.002405162	P49041	TRINITY_DN292998_c5_g6_i1	4.00E-91	40S ribosomal protein S5	ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412]	cytosolic small ribosomal subunit [GO:0022627]	mRNA binding [GO:0003729]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0000028; GO:0003729; GO:0003735; GO:0006412; GO:0019843; GO:0022627	reviewed	Caenorhabditis elegans
TRINITY_DN292999_c3_g1	-4.128629637	9.604059854	19.29400377	0.00021108	0.002341546	Q9C942	TRINITY_DN292999_c3_g1_i1	1.20E-19	Caffeoylshikimate esterase (EC 3.1.1.-) (Lysophospholipase 2) (LysoPL2)	lignin biosynthetic process [GO:0009809]; response to cadmium ion [GO:0046686]; response to hydrogen peroxide [GO:0042542]; response to oxidative stress [GO:0006979]; response to zinc ion [GO:0010043]	endoplasmic reticulum [GO:0005783]; Golgi apparatus [GO:0005794]; membrane [GO:0016020]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]	2-acylglycerol O-acyltransferase activity [GO:0003846]; caffeoyl-CoA: alcohol caffeoyl transferase activity [GO:0090430]; hydrolase activity [GO:0016787]; lysophospholipase activity [GO:0004622]	GO:0003846; GO:0004622; GO:0005783; GO:0005794; GO:0005886; GO:0006979; GO:0009506; GO:0009809; GO:0010043; GO:0016020; GO:0016787; GO:0042542; GO:0046686; GO:0090430	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN293332_c0_g1	20.66510776	7.730043897	182.5273135	1.96E-12	8.55E-11	Q5Z6F5	TRINITY_DN293332_c0_g1_i1	9.00E-33	Probable protein phosphatase 2C 59 (OsPP2C59) (EC 3.1.3.16)			magnesium-dependent protein serine/threonine phosphatase activity [GO:0004724]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]	GO:0004722; GO:0004724; GO:0046872	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN293332_c0_g2	20.70465916	8.092409602	184.8262932	1.72E-12	7.63E-11	Q99JB2	TRINITY_DN293332_c0_g2_i1	1.20E-49	"Stomatin-like protein 2, mitochondrial (SLP-2) (mslp2)"	"CD4-positive, alpha-beta T cell activation [GO:0035710]; cellular calcium ion homeostasis [GO:0006874]; interleukin-2 production [GO:0032623]; lipid localization [GO:0010876]; mitochondrial ATP synthesis coupled proton transport [GO:0042776]; mitochondrial calcium ion transmembrane transport [GO:0006851]; mitochondrial protein processing [GO:0034982]; mitochondrion organization [GO:0007005]; positive regulation of cardiolipin metabolic process [GO:1900210]; positive regulation of mitochondrial DNA replication [GO:0090297]; positive regulation of mitochondrial membrane potential [GO:0010918]; protein complex oligomerization [GO:0051259]; stress-induced mitochondrial fusion [GO:1990046]; T cell receptor signaling pathway [GO:0050852]"	actin cytoskeleton [GO:0015629]; COP9 signalosome [GO:0008180]; extrinsic component of plasma membrane [GO:0019897]; immunological synapse [GO:0001772]; membrane raft [GO:0045121]; mitochondrial inner membrane [GO:0005743]; mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]; T cell receptor complex [GO:0042101]	cardiolipin binding [GO:1901612]; GTPase binding [GO:0051020]	GO:0001772; GO:0005739; GO:0005743; GO:0005758; GO:0006851; GO:0006874; GO:0007005; GO:0008180; GO:0010876; GO:0010918; GO:0015629; GO:0019897; GO:0032623; GO:0034982; GO:0035710; GO:0042101; GO:0042776; GO:0045121; GO:0050852; GO:0051020; GO:0051259; GO:0090297; GO:1900210; GO:1901612; GO:1990046	reviewed	Mus musculus (Mouse)
TRINITY_DN293340_c0_g2	5.428525879	6.256626587	9.586696838	0.005087388	0.032265301	Q70FG7	TRINITY_DN293340_c0_g2_i1	8.30E-42	"4,5-DOPA dioxygenase extradiol (EC 1.13.11.29)"	cellular aromatic compound metabolic process [GO:0006725]; oxidation-reduction process [GO:0055114]	cytoplasm [GO:0005737]	DOPA dioxygenase activity [GO:0046566]; ferrous iron binding [GO:0008198]; stizolobate synthase activity [GO:0050297]; zinc ion binding [GO:0008270]	GO:0005737; GO:0006725; GO:0008198; GO:0008270; GO:0046566; GO:0050297; GO:0055114	reviewed	Beta vulgaris (Sugar beet)
TRINITY_DN293346_c7_g1	11.57802753	5.223042293	13.03120435	0.001744281	0.013807036	Q03206	TRINITY_DN293346_c7_g1_i1	2.80E-78	Ras-related protein ced-10 (CErac1) (Cell death protein 10) (Cell-corpse engulfment protein ced-10) (Ras-related protein rac-1)	"actin cytoskeleton organization [GO:0030036]; apoptotic process [GO:0006915]; axon extension involved in axon guidance [GO:0048846]; axon regeneration [GO:0031103]; body morphogenesis [GO:0010171]; cell migration [GO:0016477]; distal tip cell migration [GO:0097628]; dorsal/ventral axon guidance [GO:0033563]; embryonic body morphogenesis [GO:0010172]; embryonic morphogenesis [GO:0048598]; engulfment of apoptotic cell [GO:0043652]; establishment of mitotic spindle orientation [GO:0000132]; gastrulation [GO:0007369]; left/right axis specification [GO:0070986]; motor neuron axon guidance [GO:0008045]; nematode larval development [GO:0002119]; nematode male tail tip morphogenesis [GO:0045138]; neuron migration [GO:0001764]; neuron projection morphogenesis [GO:0048812]; positive regulation of distal tip cell migration [GO:1903356]; positive regulation of engulfment of apoptotic cell [GO:1901076]; regulation of cell migration [GO:0030334]; regulation of phagocytosis [GO:0050764]; regulation of synaptic transmission, GABAergic [GO:0032228]; Rho protein signal transduction [GO:0007266]; small GTPase mediated signal transduction [GO:0007264]"	cell projection [GO:0042995]; cytoplasm [GO:0005737]; cytoplasmic side of plasma membrane [GO:0009898]; cytoplasmic vesicle [GO:0031410]; cytosol [GO:0005829]; integral component of membrane [GO:0016021]; neuronal cell body [GO:0043025]; plasma membrane [GO:0005886]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; protein kinase binding [GO:0019901]	GO:0000132; GO:0001764; GO:0002119; GO:0003924; GO:0005525; GO:0005737; GO:0005829; GO:0005886; GO:0006915; GO:0007264; GO:0007266; GO:0007369; GO:0008045; GO:0009898; GO:0010171; GO:0010172; GO:0016021; GO:0016477; GO:0019901; GO:0030036; GO:0030334; GO:0031103; GO:0031410; GO:0032228; GO:0033563; GO:0042995; GO:0043025; GO:0043652; GO:0045138; GO:0048598; GO:0048812; GO:0048846; GO:0050764; GO:0070986; GO:0097628; GO:1901076; GO:1903356	reviewed	Caenorhabditis elegans
TRINITY_DN293348_c0_g2	22.91112605	9.980559691	271.6651997	3.05E-14	2.96E-12	Q14012	TRINITY_DN293348_c0_g2_i1	3.20E-62	Calcium/calmodulin-dependent protein kinase type 1 (EC 2.7.11.17) (CaM kinase I) (CaM-KI) (CaM kinase I alpha) (CaMKI-alpha)	cell cycle [GO:0007049]; negative regulation of protein binding [GO:0032091]; nucleocytoplasmic transport [GO:0006913]; positive regulation of dendritic spine development [GO:0060999]; positive regulation of muscle cell differentiation [GO:0051149]; positive regulation of neuron projection development [GO:0010976]; positive regulation of peptidyl-serine phosphorylation [GO:0033138]; positive regulation of protein acetylation [GO:1901985]; positive regulation of protein export from nucleus [GO:0046827]; positive regulation of protein serine/threonine kinase activity [GO:0071902]; positive regulation of synapse structural plasticity [GO:0051835]; positive regulation of syncytium formation by plasma membrane fusion [GO:0060143]; positive regulation of transcription by RNA polymerase II [GO:0045944]; protein phosphorylation [GO:0006468]; regulation of muscle cell differentiation [GO:0051147]; regulation of protein binding [GO:0043393]; regulation of protein localization [GO:0032880]; signal transduction [GO:0007165]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; glutamatergic synapse [GO:0098978]; nucleus [GO:0005634]; postsynaptic density [GO:0014069]	ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]	GO:0004683; GO:0005516; GO:0005524; GO:0005634; GO:0005737; GO:0005829; GO:0006468; GO:0006913; GO:0007049; GO:0007165; GO:0010976; GO:0014069; GO:0032091; GO:0032880; GO:0033138; GO:0043393; GO:0045944; GO:0046827; GO:0051147; GO:0051149; GO:0051835; GO:0060143; GO:0060999; GO:0071902; GO:0098978; GO:1901985	reviewed	Homo sapiens (Human)
TRINITY_DN293349_c0_g1	-4.998269399	7.520236826	19.341031	0.00020828	0.002324257	Q945S8	TRINITY_DN293349_c0_g1_i2	9.70E-74	Histone-lysine N-methyltransferase ASHH3 (EC 2.1.1.43) (ASH1 homolog 3) (Protein SET DOMAIN GROUP 7)	"regulation of transcription, DNA-templated [GO:0006355]"	"chromatin [GO:0000785]; chromosome, centromeric region [GO:0000775]; endoplasmic reticulum [GO:0005783]; nucleus [GO:0005634]; plasmodesma [GO:0009506]"	histone methyltransferase activity (H3-K36 specific) [GO:0046975]; protein-lysine N-methyltransferase activity [GO:0016279]	GO:0000775; GO:0000785; GO:0005634; GO:0005783; GO:0006355; GO:0009506; GO:0016279; GO:0046975	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN293350_c0_g1	23.09079351	8.72363013	238.1277478	1.39E-12	6.61E-11	O68965	TRINITY_DN293350_c0_g1_i1	3.40E-30	Inositol 2-dehydrogenase (EC 1.1.1.18) (Myo-inositol 2-dehydrogenase) (MI-dehydrogenase)			inositol 2-dehydrogenase activity [GO:0050112]	GO:0050112	reviewed	Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
TRINITY_DN293383_c0_g1	15.75116215	5.272094053	20.62258326	0.000198042	0.002228872	P91128	TRINITY_DN293383_c0_g1_i1	1.10E-59	60S ribosomal protein L13	translation [GO:0006412]	cytosolic large ribosomal subunit [GO:0022625]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0006412; GO:0022625	reviewed	Caenorhabditis elegans
TRINITY_DN293385_c0_g1	15.07616708	5.319551783	22.21008085	9.49E-05	0.001184746	O01802	TRINITY_DN293385_c0_g1_i1	1.00E-72	60S ribosomal protein L7	"maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]"	cytosolic large ribosomal subunit [GO:0022625]	RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]	GO:0000463; GO:0003723; GO:0003735; GO:0022625	reviewed	Caenorhabditis elegans
TRINITY_DN293394_c0_g1	16.88061036	5.517855939	23.08764747	0.000107323	0.001318115	P47991	TRINITY_DN293394_c0_g1_i1	3.20E-47	60S ribosomal protein L6	cytoplasmic translation [GO:0002181]; determination of adult lifespan [GO:0008340]; ribosomal large subunit assembly [GO:0000027]	cytosolic large ribosomal subunit [GO:0022625]; rough endoplasmic reticulum [GO:0005791]	RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]	GO:0000027; GO:0002181; GO:0003723; GO:0003735; GO:0005791; GO:0008340; GO:0022625	reviewed	Caenorhabditis elegans
TRINITY_DN293398_c2_g7	-4.479348475	11.03151183	17.85844175	0.000319845	0.003321885	P17614	TRINITY_DN293398_c2_g7_i1	5.50E-96	"ATP synthase subunit beta, mitochondrial (EC 7.1.2.2)"	ATP synthesis coupled proton transport [GO:0015986]	"mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) [GO:0000275]"	"ATPase activity [GO:0016887]; ATP binding [GO:0005524]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]"	GO:0000275; GO:0005524; GO:0015986; GO:0016887; GO:0046933	reviewed	Nicotiana plumbaginifolia (Leadwort-leaved tobacco) (Tex-Mex tobacco)
TRINITY_DN293450_c1_g1	-6.534384634	7.543184771	19.05856773	0.000225728	0.002459442	Q8LG10	TRINITY_DN293450_c1_g1_i6	5.10E-13	GATA transcription factor 15		nucleus [GO:0005634]	DNA-binding transcription factor activity [GO:0003700]; sequence-specific DNA binding [GO:0043565]; zinc ion binding [GO:0008270]	GO:0003700; GO:0005634; GO:0008270; GO:0043565	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN293455_c0_g1	20.0228159	8.342654481	167.979027	4.59E-12	1.87E-10	P11883	TRINITY_DN293455_c0_g1_i1	3.10E-91	"Aldehyde dehydrogenase, dimeric NADP-preferring (EC 1.2.1.5) (Aldehyde dehydrogenase family 3 member A1) (HTC-ALDH) (Tumor-associated aldehyde dehydrogenase)"	aging [GO:0007568]; cellular aldehyde metabolic process [GO:0006081]; oxidation-reduction process [GO:0055114]; positive regulation of cell population proliferation [GO:0008284]; response to cAMP [GO:0051591]; response to drug [GO:0042493]; response to glucocorticoid [GO:0051384]; response to hypoxia [GO:0001666]; response to nutrient [GO:0007584]; response to organic cyclic compound [GO:0014070]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	3-chloroallyl aldehyde dehydrogenase activity [GO:0004028]; alcohol dehydrogenase (NADP+) activity [GO:0008106]; aldehyde dehydrogenase (NAD) activity [GO:0004029]; aldehyde dehydrogenase [NAD(P)+] activity [GO:0004030]; benzaldehyde dehydrogenase (NAD+) activity [GO:0018479]	GO:0001666; GO:0004028; GO:0004029; GO:0004030; GO:0005737; GO:0005783; GO:0005829; GO:0005886; GO:0006081; GO:0007568; GO:0007584; GO:0008106; GO:0008284; GO:0014070; GO:0016021; GO:0018479; GO:0042493; GO:0051384; GO:0051591; GO:0055114	reviewed	Rattus norvegicus (Rat)
TRINITY_DN293455_c0_g2	8.564609552	1.647092675	12.82184566	0.002297382	0.017556536	P11883	TRINITY_DN293455_c0_g2_i1	5.40E-31	"Aldehyde dehydrogenase, dimeric NADP-preferring (EC 1.2.1.5) (Aldehyde dehydrogenase family 3 member A1) (HTC-ALDH) (Tumor-associated aldehyde dehydrogenase)"	aging [GO:0007568]; cellular aldehyde metabolic process [GO:0006081]; oxidation-reduction process [GO:0055114]; positive regulation of cell population proliferation [GO:0008284]; response to cAMP [GO:0051591]; response to drug [GO:0042493]; response to glucocorticoid [GO:0051384]; response to hypoxia [GO:0001666]; response to nutrient [GO:0007584]; response to organic cyclic compound [GO:0014070]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	3-chloroallyl aldehyde dehydrogenase activity [GO:0004028]; alcohol dehydrogenase (NADP+) activity [GO:0008106]; aldehyde dehydrogenase (NAD) activity [GO:0004029]; aldehyde dehydrogenase [NAD(P)+] activity [GO:0004030]; benzaldehyde dehydrogenase (NAD+) activity [GO:0018479]	GO:0001666; GO:0004028; GO:0004029; GO:0004030; GO:0005737; GO:0005783; GO:0005829; GO:0005886; GO:0006081; GO:0007568; GO:0007584; GO:0008106; GO:0008284; GO:0014070; GO:0016021; GO:0018479; GO:0042493; GO:0051384; GO:0051591; GO:0055114	reviewed	Rattus norvegicus (Rat)
TRINITY_DN293456_c0_g2	-10.87882199	7.105560067	40.99990291	1.55E-06	2.75E-05	Q67YI6	TRINITY_DN293456_c0_g2_i1	2.40E-40	RING-H2 finger protein ATL65 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL65)	protein ubiquitination [GO:0016567]	chloroplast [GO:0009507]; integral component of membrane [GO:0016021]; vesicle [GO:0031982]	metal ion binding [GO:0046872]; transferase activity [GO:0016740]; ubiquitin protein ligase binding [GO:0031625]	GO:0009507; GO:0016021; GO:0016567; GO:0016740; GO:0031625; GO:0031982; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN293483_c0_g1	4.903297609	5.891661155	10.66238403	0.003398137	0.023787276	O13672	TRINITY_DN293483_c0_g1_i1	1.00E-64	60S ribosomal protein L8 (L4) (L7A)	cytoplasmic translation [GO:0002181]; maturation of LSU-rRNA [GO:0000470]	cytosolic large ribosomal subunit [GO:0022625]	RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735]	GO:0000470; GO:0002181; GO:0003723; GO:0003735; GO:0022625	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN293491_c0_g1	-9.420676798	4.044567305	15.15929393	0.000731151	0.006754959	Q9LDR4	TRINITY_DN293491_c0_g1_i1	1.40E-17	Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol reductase) (Protein FACKEL) (Sterol C14-reductase)	sterol biosynthetic process [GO:0016126]	integral component of endoplasmic reticulum membrane [GO:0030176]	delta14-sterol reductase activity [GO:0050613]; NADP binding [GO:0050661]	GO:0016126; GO:0030176; GO:0050613; GO:0050661	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN293492_c0_g1	19.53185131	5.840431278	87.11757812	4.14E-08	9.83E-07	Q03957	TRINITY_DN293492_c0_g1_i1	6.30E-25	CTD kinase subunit alpha (CTDK-I subunit alpha) (EC 2.7.11.23) (CTD kinase 58 kDa subunit) (CTD kinase subunit 1)	"cellular response to DNA damage stimulus [GO:0006974]; mRNA 3'-end processing [GO:0031124]; peptidyl-serine phosphorylation [GO:0018105]; phosphorylation of RNA polymerase II C-terminal domain [GO:0070816]; positive regulation of DNA-templated transcription, elongation [GO:0032786]; positive regulation of transcription by RNA polymerase I [GO:0045943]; positive regulation of transcription by RNA polymerase II [GO:0045944]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; positive regulation of translational fidelity [GO:0045903]; protein phosphorylation [GO:0006468]; transcription elongation from RNA polymerase II promoter [GO:0006368]; translational initiation [GO:0006413]"	chromosome [GO:0005694]; CTDK-1 complex [GO:0070692]; cyclin/CDK positive transcription elongation factor complex [GO:0008024]; cyclin-dependent protein kinase holoenzyme complex [GO:0000307]; cytoplasm [GO:0005737]; nuclear chromatin [GO:0000790]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]	ATP binding [GO:0005524]; cyclin binding [GO:0030332]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; protein kinase activity [GO:0004672]; RNA polymerase II CTD heptapeptide repeat kinase activity [GO:0008353]; transcription factor binding [GO:0008134]; transcription regulatory region DNA binding [GO:0044212]	GO:0000307; GO:0000790; GO:0004672; GO:0004693; GO:0005524; GO:0005634; GO:0005654; GO:0005694; GO:0005730; GO:0005737; GO:0006368; GO:0006413; GO:0006468; GO:0006974; GO:0008024; GO:0008134; GO:0008353; GO:0018105; GO:0030332; GO:0031124; GO:0032786; GO:0032968; GO:0044212; GO:0045903; GO:0045943; GO:0045944; GO:0070692; GO:0070816	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN293493_c3_g1	4.320970805	14.47234379	20.80700311	0.000138446	0.00163546	P46421	TRINITY_DN293493_c3_g1_i1	4.90E-11	Glutathione S-transferase U5 (AtGSTU5) (EC 2.5.1.18) (AtGSTU1) (GST class-tau member 5) (Glutathione S-transferase 103-1A)	glutathione metabolic process [GO:0006749]; response to oxidative stress [GO:0006979]; toxin catabolic process [GO:0009407]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]	glutathione binding [GO:0043295]; glutathione transferase activity [GO:0004364]	GO:0004364; GO:0005737; GO:0005829; GO:0005886; GO:0006749; GO:0006979; GO:0009407; GO:0009506; GO:0043295	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN293493_c3_g4	6.606283875	1.640540421	9.163735751	0.006647502	0.040420467	Q9FUS8	TRINITY_DN293493_c3_g4_i1	7.60E-30	Glutathione S-transferase U17 (AtGSTU17) (EC 2.5.1.18) (GST class-tau member 17) (Glutathione S-transferase 30) (Protein EARLY RESPONSIVE TO DEHYDRATION 9)	de-etiolation [GO:0009704]; glutathione metabolic process [GO:0006749]; lateral root development [GO:0048527]; negative regulation of response to water deprivation [GO:0080148]; regulation of growth [GO:0040008]; response to growth hormone [GO:0060416]; response to karrikin [GO:0080167]; response to salt stress [GO:0009651]; toxin catabolic process [GO:0009407]	chloroplast [GO:0009507]; cytoplasm [GO:0005737]; cytosol [GO:0005829]	glutathione transferase activity [GO:0004364]	GO:0004364; GO:0005737; GO:0005829; GO:0006749; GO:0009407; GO:0009507; GO:0009651; GO:0009704; GO:0040008; GO:0048527; GO:0060416; GO:0080148; GO:0080167	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN293493_c3_g6	4.160447204	7.153303643	8.568216769	0.00757072	0.045060345	O23760	TRINITY_DN293493_c3_g6_i1	1.00E-14	Caffeic acid 3-O-methyltransferase (CAOMT) (COMT) (EC 2.1.1.68) (S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase)	lignin biosynthetic process [GO:0009809]		caffeate O-methyltransferase activity [GO:0047763]; protein dimerization activity [GO:0046983]	GO:0009809; GO:0046983; GO:0047763	reviewed	Clarkia breweri (Fairy fans) (Eucharidium breweri)
TRINITY_DN293494_c0_g1	18.64189257	8.122997157	189.0495716	1.37E-12	6.61E-11	Q8GYD2	TRINITY_DN293494_c0_g1_i1	4.10E-21	Meiotic nuclear division protein 1 homolog (AtMND1) (Meiotic nuclear division 1-like protein)	double-strand break repair [GO:0006302]; embryo sac development [GO:0009553]; pollen development [GO:0009555]; reciprocal meiotic recombination [GO:0007131]; response to ionizing radiation [GO:0010212]	nucleolus [GO:0005730]	double-stranded DNA binding [GO:0003690]	GO:0003690; GO:0005730; GO:0006302; GO:0007131; GO:0009553; GO:0009555; GO:0010212	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN293499_c0_g1	-11.74452162	9.248471034	93.60858208	1.40E-09	3.87E-08	Q0JF58	TRINITY_DN293499_c0_g1_i1	1.50E-193	Protein argonaute 4B (OsAGO4b)	gene silencing by RNA [GO:0031047]		nucleic acid binding [GO:0003676]	GO:0003676; GO:0031047	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN293682_c3_g2	20.94589568	11.18055718	172.3665064	3.53E-12	1.48E-10	A9PEK8	TRINITY_DN293682_c3_g2_i1	4.60E-153	S-adenosylmethionine synthase 3 (AdoMet synthase 3) (EC 2.5.1.6) (Methionine adenosyltransferase 3) (MAT 3)	one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]	cytosol [GO:0005829]	ATP binding [GO:0005524]; metal ion binding [GO:0046872]; methionine adenosyltransferase activity [GO:0004478]	GO:0004478; GO:0005524; GO:0005829; GO:0006556; GO:0006730; GO:0046872	reviewed	Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
TRINITY_DN293689_c0_g1	11.30248482	5.212083368	18.89290403	0.000236699	0.002523726	Q8ISN9	TRINITY_DN293689_c0_g1_i1	5.20E-14	40S ribosomal protein S25		ribosome [GO:0005840]		GO:0005840	reviewed	Branchiostoma belcheri (Amphioxus)
TRINITY_DN293689_c0_g3	8.910005129	5.140368976	13.26592393	0.001359194	0.011188047	Q8ISN9	TRINITY_DN293689_c0_g3_i1	1.20E-14	40S ribosomal protein S25		ribosome [GO:0005840]		GO:0005840	reviewed	Branchiostoma belcheri (Amphioxus)
TRINITY_DN293691_c0_g1	-11.3086032	12.31789648	64.42365199	4.01E-08	9.70E-07	Q55DY8	TRINITY_DN293691_c0_g1_i2	8.10E-45	Mitoferrin (Mitochondrial substrate carrier family protein F)	iron import into the mitochondrion [GO:0048250]	integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]; mitochondrion [GO:0005739]	iron ion transmembrane transporter activity [GO:0005381]	GO:0005381; GO:0005739; GO:0005743; GO:0016021; GO:0048250	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN293813_c0_g1	-2.554852285	8.673268872	10.47687581	0.003638948	0.025195848	Q10G56	TRINITY_DN293813_c0_g1_i1	6.70E-196	"Ornithine aminotransferase, mitochondrial (EC 2.6.1.13) (Ornithine delta-aminotransferase) (Ornithine--oxo-acid aminotransferase)"	"arginine catabolic process to glutamate [GO:0019544]; arginine catabolic process to proline via ornithine [GO:0010121]; defense response to bacterium, incompatible interaction [GO:0009816]; hyperosmotic salinity response [GO:0042538]; L-proline biosynthetic process [GO:0055129]; mitochondrion localization [GO:0051646]; ornithine catabolic process [GO:0006593]; response to abscisic acid [GO:0009737]; response to auxin [GO:0009733]; response to brassinosteroid [GO:0009741]; response to flooding [GO:0009413]; response to heat [GO:0009408]; response to jasmonic acid [GO:0009753]; response to oxidative stress [GO:0006979]; response to salt stress [GO:0009651]; response to water deprivation [GO:0009414]"	cytoplasm [GO:0005737]; mitochondrial matrix [GO:0005759]	ornithine-oxo-acid transaminase activity [GO:0004587]; pyridoxal phosphate binding [GO:0030170]; zinc ion binding [GO:0008270]	GO:0004587; GO:0005737; GO:0005759; GO:0006593; GO:0006979; GO:0008270; GO:0009408; GO:0009413; GO:0009414; GO:0009651; GO:0009733; GO:0009737; GO:0009741; GO:0009753; GO:0009816; GO:0010121; GO:0019544; GO:0030170; GO:0042538; GO:0051646; GO:0055129	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN293818_c2_g1	6.512826299	1.381680559	11.17322389	0.003849903	0.026361615	A5H8G4	TRINITY_DN293818_c2_g1_i1	4.60E-18	Peroxidase 1 (EC 1.11.1.7) (Plasma membrane-bound peroxidase 1) (pmPOX1)	hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979]	extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; vacuole [GO:0005773]	heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]	GO:0004601; GO:0005576; GO:0005773; GO:0006979; GO:0009505; GO:0009506; GO:0020037; GO:0042744; GO:0046872	reviewed	Zea mays (Maize)
TRINITY_DN293818_c2_g2	7.747876142	6.267030105	13.62033629	0.001206924	0.010234054	A5H8G4	TRINITY_DN293818_c2_g2_i1	4.80E-90	Peroxidase 1 (EC 1.11.1.7) (Plasma membrane-bound peroxidase 1) (pmPOX1)	hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979]	extracellular region [GO:0005576]; plant-type cell wall [GO:0009505]; plasmodesma [GO:0009506]; vacuole [GO:0005773]	heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]	GO:0004601; GO:0005576; GO:0005773; GO:0006979; GO:0009505; GO:0009506; GO:0020037; GO:0042744; GO:0046872	reviewed	Zea mays (Maize)
TRINITY_DN293818_c3_g2	-9.498780721	4.935561532	19.18651804	0.000217634	0.002405162	A5PJZ1	TRINITY_DN293818_c3_g2_i1	1.90E-11	Calcium-binding mitochondrial carrier protein SCaMC-1 (Small calcium-binding mitochondrial carrier protein 1) (Solute carrier family 25 member 24)	cellular response to calcium ion [GO:0071277]; cellular response to oxidative stress [GO:0034599]; mitochondrial transport [GO:0006839]; regulation of cell death [GO:0010941]	integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]	ATP transmembrane transporter activity [GO:0005347]; calcium ion binding [GO:0005509]	GO:0005347; GO:0005509; GO:0005743; GO:0006839; GO:0010941; GO:0016021; GO:0034599; GO:0071277	reviewed	Bos taurus (Bovine)
TRINITY_DN293826_c5_g4	9.702096223	2.014980395	13.9435804	0.001646366	0.013132739	P40615	TRINITY_DN293826_c5_g4_i1	2.80E-40	H/ACA ribonucleoprotein complex subunit DKC1 (EC 5.4.99.-) (Dyskerin) (Nopp140-associated protein of 57 kDa) (Nucleolar protein NAP57) (Nucleolar protein family A member 4) (snoRNP protein DKC1)	box H/ACA snoRNA 3'-end processing [GO:0000495]; enzyme-directed rRNA pseudouridine synthesis [GO:0000455]; mRNA pseudouridine synthesis [GO:1990481]; positive regulation of cell population proliferation [GO:0008284]; rRNA pseudouridine synthesis [GO:0031118]; snoRNA guided rRNA pseudouridine synthesis [GO:0000454]; snRNA pseudouridine synthesis [GO:0031120]; telomere maintenance via telomerase [GO:0007004]	box H/ACA snoRNP complex [GO:0031429]; Cajal body [GO:0015030]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; telomerase holoenzyme complex [GO:0005697]	pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]	GO:0000454; GO:0000455; GO:0000495; GO:0003723; GO:0005654; GO:0005697; GO:0005730; GO:0007004; GO:0008284; GO:0009982; GO:0015030; GO:0031118; GO:0031120; GO:0031429; GO:1990481	reviewed	Rattus norvegicus (Rat)
TRINITY_DN293895_c0_g1	19.71429061	5.863524952	86.90599294	4.22E-08	9.89E-07	Q53RK8	TRINITY_DN293895_c0_g1_i1	3.90E-91	DEAD-box ATP-dependent RNA helicase 21 (EC 3.6.4.13)	mRNA processing [GO:0006397]; RNA splicing [GO:0008380]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; helicase activity [GO:0004386]; RNA binding [GO:0003723]	GO:0003723; GO:0004386; GO:0005524; GO:0005634; GO:0005737; GO:0006397; GO:0008380	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN294142_c0_g1	-9.678254543	2.621945862	9.038120029	0.007569189	0.045060345	Q59536	TRINITY_DN294142_c0_g1_i1	6.00E-147	Protease 2 (EC 3.4.21.83) (Oligopeptidase B) (Protease II)			serine-type endopeptidase activity [GO:0004252]; serine-type exopeptidase activity [GO:0070008]	GO:0004252; GO:0070008	reviewed	Moraxella lacunata
TRINITY_DN294161_c0_g1	12.83666735	2.832624627	28.18091342	5.74E-05	0.000746459	Q9LZQ9	TRINITY_DN294161_c0_g1_i1	9.70E-103	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP43)	mRNA processing [GO:0006397]; RNA splicing [GO:0008380]	cytosol [GO:0005829]; nucleolus [GO:0005730]; spliceosomal complex [GO:0005681]	ATP binding [GO:0005524]; ATP-dependent 3'-5' RNA helicase activity [GO:0034459]; RNA binding [GO:0003723]	GO:0003723; GO:0005524; GO:0005681; GO:0005730; GO:0005829; GO:0006397; GO:0008380; GO:0034459	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN294161_c0_g2	18.41759355	6.857006038	115.9852686	1.82E-10	6.07E-09	O22899	TRINITY_DN294161_c0_g2_i1	6.20E-212	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP43)	mRNA processing [GO:0006397]; RNA splicing [GO:0008380]	chloroplast envelope [GO:0009941]; membrane [GO:0016020]; spliceosomal complex [GO:0005681]	ATP binding [GO:0005524]; ATP-dependent 3'-5' RNA helicase activity [GO:0034459]; RNA binding [GO:0003723]	GO:0003723; GO:0005524; GO:0005681; GO:0006397; GO:0008380; GO:0009941; GO:0016020; GO:0034459	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN294184_c0_g1	14.63528628	3.858161775	18.46857975	0.000485697	0.004697601	Q9NL98	TRINITY_DN294184_c0_g1_i1	3.40E-59	Peroxiredoxin (EC 1.11.1.15) (AsPrx) (Thioredoxin peroxidase)	cell redox homeostasis [GO:0045454]; response to oxidative stress [GO:0006979]	cell [GO:0005623]	antioxidant activity [GO:0016209]; peroxidase activity [GO:0004601]; thioredoxin peroxidase activity [GO:0008379]	GO:0004601; GO:0005623; GO:0006979; GO:0008379; GO:0016209; GO:0045454	reviewed	Ascaris suum (Pig roundworm) (Ascaris lumbricoides)
TRINITY_DN294185_c1_g1	3.57291908	7.778956861	9.709010896	0.004855275	0.031437399	Q09473	TRINITY_DN294185_c1_g1_i1	7.60E-30	ER lumen protein-retaining receptor erd-2.2	endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; protein retention in ER lumen [GO:0006621]; protein transport [GO:0015031]	cis-Golgi network [GO:0005801]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]	ER retention sequence binding [GO:0046923]	GO:0005783; GO:0005789; GO:0005794; GO:0005801; GO:0006621; GO:0006888; GO:0015031; GO:0016021; GO:0046923	reviewed	Caenorhabditis elegans
TRINITY_DN294187_c0_g1	-5.518384048	7.367389835	25.25497047	4.36E-05	0.000584537	Q0DST9	TRINITY_DN294187_c0_g1_i2	1.50E-05	RNA pseudouridine synthase 5 (EC 5.4.99.-) (RNA pseudouridylate synthase 5) (RNA-uridine isomerase 5)	pseudouridine synthesis [GO:0001522]		pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]	GO:0001522; GO:0003723; GO:0009982	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN294189_c0_g1	10.06608575	3.375733948	16.16970335	0.000532584	0.005071839	Q487Z6	TRINITY_DN294189_c0_g1_i1	1.10E-146	50S ribosomal protein L2	translation [GO:0006412]	large ribosomal subunit [GO:0015934]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]; transferase activity [GO:0016740]	GO:0003735; GO:0006412; GO:0015934; GO:0016740; GO:0019843	reviewed	Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)
TRINITY_DN294194_c0_g1	20.91857652	9.397860602	191.808221	1.18E-12	5.87E-11	Q58DA0	TRINITY_DN294194_c0_g1_i1	3.50E-27	26S proteasome non-ATPase regulatory subunit 4 (26S proteasome regulatory subunit RPN10)	proteasome assembly [GO:0043248]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]	"cytosol [GO:0005829]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; proteasome accessory complex [GO:0022624]; proteasome regulatory particle, base subcomplex [GO:0008540]"	polyubiquitin modification-dependent protein binding [GO:0031593]	GO:0005634; GO:0005654; GO:0005829; GO:0008540; GO:0022624; GO:0031593; GO:0043161; GO:0043248	reviewed	Bos taurus (Bovine)
TRINITY_DN294194_c0_g2	22.63435814	8.587981503	250.6101098	8.63E-13	4.53E-11	Q9U5N0	TRINITY_DN294194_c0_g2_i1	8.80E-28	V-type proton ATPase subunit H (V-ATPase subunit H) (Vacuolar proton pump subunit H)	ATP hydrolysis coupled proton transport [GO:0015991]	"vacuolar proton-transporting V-type ATPase, V1 domain [GO:0000221]"	"proton-transporting ATPase activity, rotational mechanism [GO:0046961]"	GO:0000221; GO:0015991; GO:0046961	reviewed	Manduca sexta (Tobacco hawkmoth) (Tobacco hornworm)
TRINITY_DN294619_c0_g2	-7.138996197	5.255131073	17.405156	0.000365912	0.003716585	Q9SJA4	TRINITY_DN294619_c0_g2_i2	4.20E-79	Probable cyclic nucleotide-gated ion channel 14 (Cyclic nucleotide- and calmodulin-regulated ion channel 14)		integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	calmodulin binding [GO:0005516]; cAMP binding [GO:0030552]; cGMP binding [GO:0030553]; voltage-gated potassium channel activity [GO:0005249]	GO:0005249; GO:0005516; GO:0005886; GO:0016021; GO:0030552; GO:0030553	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN294650_c0_g4	5.043392209	10.40857294	44.65297406	8.06E-07	1.48E-05	Q52QH4	TRINITY_DN294650_c0_g4_i1	1.90E-68	NAC domain-containing protein 68 (ONAC068) (OsNAC4)	"regulation of transcription, DNA-templated [GO:0006355]"	nucleus [GO:0005634]	DNA binding [GO:0003677]	GO:0003677; GO:0005634; GO:0006355	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN294652_c0_g3	19.24621928	5.738872947	87.34507075	4.07E-08	9.76E-07	Q5U780	TRINITY_DN294652_c0_g3_i1	6.10E-43	Lipase (EC 3.1.1.3) (Lip 42) (Thermostable organic solvent tolerant lipase) (Triacylglycerol hydrolase)	lipid catabolic process [GO:0016042]	extracellular region [GO:0005576]	metal ion binding [GO:0046872]; triglyceride lipase activity [GO:0004806]	GO:0004806; GO:0005576; GO:0016042; GO:0046872	reviewed	Bacillus sp.
TRINITY_DN294655_c3_g1	-3.376019428	7.633363908	11.30223397	0.002692556	0.019984317	Q84WV9	TRINITY_DN294655_c3_g1_i1	6.40E-73	Glutaminyl-peptide cyclotransferase (EC 2.3.2.5) (Glutaminyl cyclase)	"peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase [GO:0017186]"	endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	glutaminyl-peptide cyclotransferase activity [GO:0016603]	GO:0005789; GO:0005886; GO:0016021; GO:0016603; GO:0017186	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN294655_c4_g1	-10.2093478	9.476924055	46.75021676	5.64E-07	1.06E-05	A7NVJ4	TRINITY_DN294655_c4_g1_i1	1.40E-59	"NAD(P)H-quinone oxidoreductase subunit M, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase subunit M) (NDH subunit M) (NDH-M) (NADH-plastoquinone oxidoreductase subunit M)"		chloroplast thylakoid membrane [GO:0009535]	"oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [GO:0016655]; quinone binding [GO:0048038]"	GO:0009535; GO:0016655; GO:0048038	reviewed	Vitis vinifera (Grape)
TRINITY_DN294655_c4_g2	-7.801127852	6.34837742	21.81891594	0.000105328	0.001298769	A7NVJ4	TRINITY_DN294655_c4_g2_i1	1.30E-11	"NAD(P)H-quinone oxidoreductase subunit M, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase subunit M) (NDH subunit M) (NDH-M) (NADH-plastoquinone oxidoreductase subunit M)"		chloroplast thylakoid membrane [GO:0009535]	"oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [GO:0016655]; quinone binding [GO:0048038]"	GO:0009535; GO:0016655; GO:0048038	reviewed	Vitis vinifera (Grape)
TRINITY_DN294657_c0_g2	18.81434023	5.439824447	75.43989745	1.15E-07	2.42E-06	Q63584	TRINITY_DN294657_c0_g2_i1	8.50E-15	Transmembrane emp24 domain-containing protein 10 (21 kDa transmembrane-trafficking protein) (Transmembrane protein Tmp21) (p24 family protein delta-1) (p24delta1)	"COPI-coated vesicle budding [GO:0035964]; endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; Golgi organization [GO:0007030]; intracellular protein transport [GO:0006886]; kidney development [GO:0001822]; protein complex oligomerization [GO:0051259]; regulated exocytosis [GO:0045055]; regulation of amyloid-beta formation [GO:1902003]; response to alkaloid [GO:0043279]; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum [GO:0006890]; vesicle targeting [GO:0006903]; vesicle targeting, to, from or within Golgi [GO:0048199]"	cis-Golgi network [GO:0005801]; COPI-coated vesicle [GO:0030137]; COPII-coated ER to Golgi transport vesicle [GO:0030134]; endoplasmic reticulum [GO:0005783]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; endoplasmic reticulum-Golgi intermediate compartment membrane [GO:0033116]; endoplasmic reticulum membrane [GO:0005789]; gamma-secretase complex [GO:0070765]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; intracellular membrane-bounded organelle [GO:0043231]; melanosome [GO:0042470]; plasma membrane [GO:0005886]; secretory granule membrane [GO:0030667]; trans-Golgi network transport vesicle [GO:0030140]; transport vesicle membrane [GO:0030658]; zymogen granule membrane [GO:0042589]	protein-containing complex binding [GO:0044877]; syntaxin binding [GO:0019905]	GO:0000139; GO:0001822; GO:0005783; GO:0005789; GO:0005793; GO:0005794; GO:0005801; GO:0005886; GO:0006886; GO:0006888; GO:0006890; GO:0006903; GO:0007030; GO:0016021; GO:0019905; GO:0030134; GO:0030137; GO:0030140; GO:0030658; GO:0030667; GO:0033116; GO:0035964; GO:0042470; GO:0042589; GO:0043231; GO:0043279; GO:0044877; GO:0045055; GO:0048199; GO:0051259; GO:0070765; GO:1902003	reviewed	Rattus norvegicus (Rat)
TRINITY_DN294674_c6_g1	-7.038834402	8.701846401	51.28191272	2.69E-07	5.31E-06	Q8GY91	TRINITY_DN294674_c6_g1_i1	3.00E-87	Putative L-ascorbate peroxidase 6 (AtAPx08) (EC 1.11.1.11)	cellular response to oxidative stress [GO:0034599]; hydrogen peroxide catabolic process [GO:0042744]; response to reactive oxygen species [GO:0000302]; seed germination [GO:0009845]; seed maturation [GO:0010431]	cytosol [GO:0005829]	heme binding [GO:0020037]; L-ascorbate peroxidase activity [GO:0016688]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]	GO:0000302; GO:0004601; GO:0005829; GO:0009845; GO:0010431; GO:0016688; GO:0020037; GO:0034599; GO:0042744; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN294747_c0_g1	-6.622236168	8.746677666	28.98961696	1.80E-05	0.000257291	Q84MD6	TRINITY_DN294747_c0_g1_i1	7.50E-07	Tyrosine-protein phosphatase DSP2 (EC 3.1.3.48) (Protein PLANT AND FUNGI ATYPICAL DUAL-SPECIFICITY PHOSPHATASE 2) (AtPFA-DSP2)		cytoplasm [GO:0005737]	phosphatase activity [GO:0016791]; protein tyrosine phosphatase activity [GO:0004725]	GO:0004725; GO:0005737; GO:0016791	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN294759_c0_g1	-4.361335566	10.01189166	24.9195373	4.74E-05	0.000632419	Q93YN4	TRINITY_DN294759_c0_g1_i1	2.90E-164	Mitochondrial fission protein ELM1 (Protein ELONGATED MITOCHONDRIA 1)	mitochondrial fission [GO:0000266]	mitochondrial outer membrane [GO:0005741]		GO:0000266; GO:0005741	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN294767_c5_g1	9.535836242	3.057631824	10.16732473	0.004083559	0.027415652	P49210	TRINITY_DN294767_c5_g1_i1	4.00E-34	60S ribosomal protein L9	cytoplasmic translation [GO:0002181]	cytosolic large ribosomal subunit [GO:0022625]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0002181; GO:0003735; GO:0019843; GO:0022625	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN294767_c5_g2	8.469329294	4.537845498	10.95650814	0.003051382	0.021962857	P49210	TRINITY_DN294767_c5_g2_i1	2.20E-44	60S ribosomal protein L9	cytoplasmic translation [GO:0002181]	cytosolic large ribosomal subunit [GO:0022625]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0002181; GO:0003735; GO:0019843; GO:0022625	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN294772_c2_g5	8.763851062	4.204117313	15.57285164	0.000641496	0.005998279	Q9XGL4	TRINITY_DN294772_c2_g5_i1	8.20E-39	60S ribosomal protein L31	translation [GO:0006412]	ribosome [GO:0005840]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005840; GO:0006412	reviewed	Cyanophora paradoxa
TRINITY_DN294775_c0_g1	11.25330885	4.946191777	19.52318046	0.000197811	0.002228872	P79015	TRINITY_DN294775_c0_g1_i3	4.70E-18	60S ribosomal protein L32-A	cytoplasmic translation [GO:0002181]	cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; nucleus [GO:0005634]	structural constituent of ribosome [GO:0003735]	GO:0002181; GO:0003735; GO:0005634; GO:0005829; GO:0022625	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN294775_c0_g2	9.729870451	2.776220886	14.24857663	0.00118801	0.010101352	Q7RXY1	TRINITY_DN294775_c0_g2_i1	1.80E-20	60S ribosomal protein L32 (Cytoplasmic ribosomal protein-63)	translation [GO:0006412]	cytosolic large ribosomal subunit [GO:0022625]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0006412; GO:0022625	reviewed	Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
TRINITY_DN294776_c2_g6	8.820232221	8.414652427	21.57977616	0.000112291	0.001361435	Q9ZPE7	TRINITY_DN294776_c2_g6_i1	7.20E-97	Protein EXORDIUM	response to brassinosteroid [GO:0009741]	apoplast [GO:0048046]; cell wall [GO:0005618]; extracellular space [GO:0005615]; Golgi apparatus [GO:0005794]; plant-type cell wall [GO:0009505]		GO:0005615; GO:0005618; GO:0005794; GO:0009505; GO:0009741; GO:0048046	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN294778_c3_g3	-2.413750495	8.641798191	10.38927691	0.003759119	0.025911966	Q84WK5	TRINITY_DN294778_c3_g3_i2	1.50E-27	Protein GID8 homolog		cytoplasm [GO:0005737]		GO:0005737	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN294779_c0_g2	-4.783217807	9.365513676	34.00587662	6.05E-06	9.81E-05	P35135	TRINITY_DN294779_c0_g2_i3	1.90E-82	Ubiquitin-conjugating enzyme E2-17 kDa (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme) (Ubiquitin carrier protein) (Ubiquitin-protein ligase)			ATP binding [GO:0005524]; ubiquitin conjugating enzyme activity [GO:0061631]	GO:0005524; GO:0061631	reviewed	Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
TRINITY_DN294779_c1_g2	-2.186636036	10.86860116	8.271610992	0.008525966	0.04917325	Q94F47	TRINITY_DN294779_c1_g2_i1	1.50E-67	Ubiquitin-conjugating enzyme E2 28 (EC 2.3.2.23) (AtUBC9A) (E2 ubiquitin-conjugating enzyme 28) (Ubiquitin carrier protein 28)			ATP binding [GO:0005524]; ubiquitin conjugating enzyme activity [GO:0061631]	GO:0005524; GO:0061631	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN294779_c1_g9	5.688624603	5.40804601	13.69219417	0.001178385	0.010074864	Q94F47	TRINITY_DN294779_c1_g9_i1	7.30E-67	Ubiquitin-conjugating enzyme E2 28 (EC 2.3.2.23) (AtUBC9A) (E2 ubiquitin-conjugating enzyme 28) (Ubiquitin carrier protein 28)			ATP binding [GO:0005524]; ubiquitin conjugating enzyme activity [GO:0061631]	GO:0005524; GO:0061631	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN294781_c1_g1	15.92309363	4.381896917	18.78703609	0.000448602	0.004393741	Q29361	TRINITY_DN294781_c1_g1_i1	1.80E-37	60S ribosomal protein L35	"maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; translation [GO:0006412]"	cytoplasmic side of rough endoplasmic reticulum membrane [GO:0098556]; cytosolic large ribosomal subunit [GO:0022625]; large ribosomal subunit [GO:0015934]	mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]	GO:0000463; GO:0003729; GO:0003735; GO:0006412; GO:0015934; GO:0022625; GO:0098556	reviewed	Sus scrofa (Pig)
TRINITY_DN294781_c2_g1	6.419572176	4.523654689	10.90397335	0.003110357	0.022335395	Q3MHM7	TRINITY_DN294781_c2_g1_i3	2.70E-31	60S ribosomal protein L35	"maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000463]; translation [GO:0006412]"	cytosolic large ribosomal subunit [GO:0022625]	mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]	GO:0000463; GO:0003729; GO:0003735; GO:0006412; GO:0022625	reviewed	Bos taurus (Bovine)
TRINITY_DN294783_c0_g1	-4.332876304	8.793628247	21.84153227	0.000104695	0.001296119	Q8L4D8	TRINITY_DN294783_c0_g1_i1	5.70E-14	Protein IQ-DOMAIN 31		cytosol [GO:0005829]; microtubule associated complex [GO:0005875]; plasma membrane [GO:0005886]		GO:0005829; GO:0005875; GO:0005886	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN294787_c0_g3	-7.300672612	3.245215565	8.806354616	0.007338237	0.044015202	F1MH24	TRINITY_DN294787_c0_g3_i1	1.60E-09	AP2-associated protein kinase 1 (EC 2.7.11.1) (Adaptor-associated kinase 1)	endocytosis [GO:0006897]; positive regulation of Notch signaling pathway [GO:0045747]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; protein stabilization [GO:0050821]; regulation of clathrin-dependent endocytosis [GO:2000369]; regulation of protein localization [GO:0032880]	cell leading edge [GO:0031252]; clathrin-coated pit [GO:0005905]; clathrin-coated vesicle [GO:0030136]; extrinsic component of plasma membrane [GO:0019897]; nucleus [GO:0005634]; terminal bouton [GO:0043195]	AP-2 adaptor complex binding [GO:0035612]; ATP binding [GO:0005524]; Notch binding [GO:0005112]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005112; GO:0005524; GO:0005634; GO:0005905; GO:0006468; GO:0006897; GO:0019897; GO:0030136; GO:0031252; GO:0032880; GO:0035612; GO:0043195; GO:0045747; GO:0046777; GO:0050821; GO:2000369	reviewed	Bos taurus (Bovine)
TRINITY_DN294789_c1_g1	-3.783955845	8.65673957	23.86548327	6.18E-05	0.000793577	Q8GXE9	TRINITY_DN294789_c1_g1_i1	9.00E-17	HVA22-like protein j (AtHVA22j)					reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN295071_c1_g1	-7.504448706	9.273160042	91.92276978	1.66E-09	4.55E-08	C0LGG8	TRINITY_DN295071_c1_g1_i3	1.10E-06	Probable LRR receptor-like serine/threonine-protein kinase At1g53430 (EC 2.7.11.1)	protein autophosphorylation [GO:0046777]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005524; GO:0005886; GO:0016021; GO:0046777	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN295075_c3_g1	9.71611634	4.646185518	17.24422571	0.000383969	0.003845906	Q5UAP0	TRINITY_DN295075_c3_g1_i1	1.10E-71	40S ribosomal protein S4	translation [GO:0006412]	ribosome [GO:0005840]	rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005840; GO:0006412; GO:0019843	reviewed	Bombyx mori (Silk moth)
TRINITY_DN295083_c1_g3	7.931185512	16.53367759	57.49694609	1.05E-07	2.25E-06	P21357	TRINITY_DN295083_c1_g3_i1	8.20E-237	"Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1) (DAHP synthase 1) (Phospho-2-keto-3-deoxyheptonate aldolase 1)"	aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423]	chloroplast [GO:0009507]; membrane [GO:0016020]	3-deoxy-7-phosphoheptulonate synthase activity [GO:0003849]	GO:0003849; GO:0009073; GO:0009423; GO:0009507; GO:0016020	reviewed	Solanum tuberosum (Potato)
TRINITY_DN295083_c2_g1	-3.436001723	9.751747911	20.36277552	0.000156438	0.001813388	B8AAV3	TRINITY_DN295083_c2_g1_i5	2.30E-61	"Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic (OsCEST)"	chloroplast organization [GO:0009658]; heat acclimation [GO:0010286]; hyperosmotic salinity response [GO:0042538]; photosystem I assembly [GO:0048564]; response to photooxidative stress [GO:0080183]; response to water deprivation [GO:0009414]	chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]		GO:0009414; GO:0009535; GO:0009658; GO:0010286; GO:0016021; GO:0042538; GO:0048564; GO:0080183	reviewed	Oryza sativa subsp. indica (Rice)
TRINITY_DN295213_c0_g1	23.83356573	7.956567644	234.9609529	2.13E-11	7.86E-10	P41004	TRINITY_DN295213_c0_g1_i1	2.50E-125	Structural maintenance of chromosomes protein 4 (Cell untimely torn protein 3) (Chromosome segregation protein cut3)	cell division [GO:0051301]; mitotic chromosome condensation [GO:0007076]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; nuclear chromatin [GO:0000790]; nuclear condensin complex [GO:0000799]; nucleus [GO:0005634]	ATP binding [GO:0005524]; DNA translocase activity [GO:0015616]; topological DNA entrapment activity [GO:0061776]	GO:0000790; GO:0000799; GO:0005524; GO:0005634; GO:0005737; GO:0005829; GO:0007076; GO:0015616; GO:0051301; GO:0061776	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN295214_c0_g1	11.11795929	5.702543078	13.812902	0.001132091	0.009732837	P19036	TRINITY_DN295214_c0_g1_i2	3.10E-12	17.4 kDa class I heat shock protein (17.4 kDa heat shock protein 1) (AtHsp17.4A)	protein complex oligomerization [GO:0051259]; protein folding [GO:0006457]; response to heat [GO:0009408]; response to hydrogen peroxide [GO:0042542]; response to reactive oxygen species [GO:0000302]; response to salt stress [GO:0009651]	cytoplasm [GO:0005737]	protein self-association [GO:0043621]; unfolded protein binding [GO:0051082]	GO:0000302; GO:0005737; GO:0006457; GO:0009408; GO:0009651; GO:0042542; GO:0043621; GO:0051082; GO:0051259	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN295216_c0_g2	-3.330966187	10.00785513	24.35056247	5.47E-05	0.000716771	Q6ZIK0	TRINITY_DN295216_c0_g2_i1	1.10E-108	"Probable tocopherol O-methyltransferase, chloroplastic (EC 2.1.1.95) (Gamma-tocopherol methyltransferase) (Vitamin E pathway gene 4 protein)"	vitamin E biosynthetic process [GO:0010189]	chloroplast [GO:0009507]	tocopherol O-methyltransferase activity [GO:0050342]	GO:0009507; GO:0010189; GO:0050342	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN295218_c0_g1	18.7557164	6.779786122	112.2706677	2.50E-10	7.77E-09	Q8BWD2	TRINITY_DN295218_c0_g1_i1	1.90E-17	Inositol hexakisphosphate kinase 3 (InsP6 kinase 3) (EC 2.7.4.21) (Inositol hexaphosphate kinase 3)	inositol phosphate biosynthetic process [GO:0032958]; phosphatidylinositol metabolic process [GO:0046488]; protein phosphorylation [GO:0006468]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; inositol hexakisphosphate 1-kinase activity [GO:0052723]; inositol hexakisphosphate 3-kinase activity [GO:0052724]; inositol hexakisphosphate 5-kinase activity [GO:0000832]; inositol hexakisphosphate 6-kinase activity [GO:0000831]; inositol hexakisphosphate kinase activity [GO:0000828]	GO:0000828; GO:0000831; GO:0000832; GO:0005524; GO:0005634; GO:0005737; GO:0006468; GO:0032958; GO:0046488; GO:0052723; GO:0052724	reviewed	Mus musculus (Mouse)
TRINITY_DN295223_c0_g1	7.471201076	3.9413689	16.50273691	0.00048072	0.00466404	Q9C9Y1	TRINITY_DN295223_c0_g1_i1	8.60E-06	TOM1-like protein 8	intracellular protein transport [GO:0006886]	cell [GO:0005623]; membrane [GO:0016020]		GO:0005623; GO:0006886; GO:0016020	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN295224_c1_g2	23.52989589	10.65060282	381.3848397	7.87E-16	6.09E-13	Q05062	TRINITY_DN295224_c1_g2_i1	6.80E-42	Cell division control protein 42 homolog (CDC42Ce)	actin cytoskeleton organization [GO:0030036]; actin filament organization [GO:0007015]; Cdc42 protein signal transduction [GO:0032488]; cell division [GO:0051301]; cell projection assembly [GO:0030031]; endocytosis [GO:0006897]; epithelial tube morphogenesis [GO:0060562]; establishment of mitotic spindle localization [GO:0040001]; establishment of mitotic spindle orientation [GO:0000132]; establishment or maintenance of cell polarity [GO:0007163]; positive regulation of clathrin-dependent endocytosis [GO:2000370]; regulation of actin cytoskeleton organization [GO:0032956]; regulation of actin filament-based process [GO:0032970]; regulation of cell shape [GO:0008360]; regulation of Golgi organization [GO:1903358]; Rho protein signal transduction [GO:0007266]	cell cortex [GO:0005938]; cell projection [GO:0042995]; centrosome [GO:0005813]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; integral component of membrane [GO:0016021]; perinuclear region of cytoplasm [GO:0048471]; plasma membrane [GO:0005886]; recycling endosome [GO:0055037]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; protein kinase binding [GO:0019901]	GO:0000132; GO:0003924; GO:0005525; GO:0005737; GO:0005813; GO:0005829; GO:0005886; GO:0005938; GO:0006897; GO:0007015; GO:0007163; GO:0007266; GO:0008360; GO:0016021; GO:0019901; GO:0030031; GO:0030036; GO:0032488; GO:0032956; GO:0032970; GO:0040001; GO:0042995; GO:0048471; GO:0051301; GO:0055037; GO:0060562; GO:1903358; GO:2000370	reviewed	Caenorhabditis elegans
TRINITY_DN295225_c0_g2	-8.475471583	1.801830611	12.29785364	0.002512799	0.018876486	Q9FHB6	TRINITY_DN295225_c0_g2_i1	4.50E-15	Protein DETOXIFICATION 16 (AtDTX16) (Multidrug and toxic compound extrusion protein 16) (MATE protein 16)	drug transmembrane transport [GO:0006855]; response to nematode [GO:0009624]	integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]	antiporter activity [GO:0015297]; xenobiotic transmembrane transporter activity [GO:0042910]	GO:0005774; GO:0006855; GO:0009624; GO:0015297; GO:0016021; GO:0042910	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN295225_c1_g1	-9.923597695	5.618826503	21.86928715	0.000103923	0.001291729	Q9FHB6	TRINITY_DN295225_c1_g1_i1	1.00E-41	Protein DETOXIFICATION 16 (AtDTX16) (Multidrug and toxic compound extrusion protein 16) (MATE protein 16)	drug transmembrane transport [GO:0006855]; response to nematode [GO:0009624]	integral component of membrane [GO:0016021]; vacuolar membrane [GO:0005774]	antiporter activity [GO:0015297]; xenobiotic transmembrane transporter activity [GO:0042910]	GO:0005774; GO:0006855; GO:0009624; GO:0015297; GO:0016021; GO:0042910	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN295268_c2_g1	-3.171286164	8.736290784	16.58567487	0.000468679	0.004561518	B9DFI7	TRINITY_DN295268_c2_g1_i1	1.60E-124	Probable methyltransferase PMT2 (EC 2.1.1.-)		endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; trans-Golgi network [GO:0005802]	methyltransferase activity [GO:0008168]	GO:0000139; GO:0005768; GO:0005794; GO:0005802; GO:0008168; GO:0016020; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN295269_c0_g3	20.66408315	6.333026529	112.0750364	6.54E-09	1.73E-07	Q0KHQ5	TRINITY_DN295269_c0_g3_i1	2.60E-11	Serine/threonine-protein kinase Tao (EC 2.7.11.1)	activation of MAPKK activity [GO:0000186]; activation of protein kinase activity [GO:0032147]; apoptotic process [GO:0006915]; central complex development [GO:0048036]; intestinal stem cell homeostasis [GO:0036335]; mushroom body development [GO:0016319]; negative regulation of organ growth [GO:0046621]; ovarian follicle cell development [GO:0030707]; positive regulation of endocytosis [GO:0045807]; positive regulation of hippo signaling [GO:0035332]; protein phosphorylation [GO:0006468]; response to cocaine [GO:0042220]; response to ethanol [GO:0045471]; response to nicotine [GO:0035094]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098]; tissue homeostasis [GO:0001894]	axon [GO:0030424]; basal part of cell [GO:0045178]; cell cortex [GO:0005938]; cytoplasm [GO:0005737]; membrane [GO:0016020]; microtubule [GO:0005874]; nucleus [GO:0005634]; perikaryon [GO:0043204]; plasma membrane [GO:0005886]; spindle [GO:0005819]	ATP binding [GO:0005524]; MAP kinase kinase kinase activity [GO:0004709]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]	GO:0000186; GO:0001894; GO:0004672; GO:0004674; GO:0004709; GO:0005524; GO:0005634; GO:0005737; GO:0005819; GO:0005874; GO:0005886; GO:0005938; GO:0006468; GO:0006915; GO:0016020; GO:0016319; GO:0023014; GO:0030424; GO:0030707; GO:0031098; GO:0032147; GO:0035094; GO:0035332; GO:0036335; GO:0042220; GO:0043204; GO:0045178; GO:0045471; GO:0045807; GO:0046621; GO:0048036	reviewed	Drosophila melanogaster (Fruit fly)
TRINITY_DN295269_c0_g4	14.44433914	3.450468796	36.67207223	1.27E-05	0.000191527	Q55FT4	TRINITY_DN295269_c0_g4_i1	3.70E-13	Probable serine/threonine-protein kinase tsuA (EC 2.7.11.1) (Tsunami)	chemotaxis to cAMP [GO:0043327]; chemotaxis to folate [GO:0043326]; establishment of cell polarity [GO:0030010]; negative regulation of actin filament polymerization [GO:0030837]; positive regulation of hh target transcription factor activity [GO:0007228]; protein phosphorylation [GO:0006468]; regulation of aggregation involved in sorocarp development [GO:0060176]; regulation of pseudopodium assembly [GO:0031272]	cytoplasm [GO:0005737]; cytoplasmic microtubule [GO:0005881]	ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005524; GO:0005737; GO:0005881; GO:0006468; GO:0007228; GO:0030010; GO:0030837; GO:0031272; GO:0043326; GO:0043327; GO:0060176	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN295269_c0_g5	15.13833483	3.959811517	40.95269325	6.54E-06	0.000104316	Q55FS2	TRINITY_DN295269_c0_g5_i1	7.60E-11	Serine/threonine-protein kinase 4 homolog B (EC 2.7.11.1) (Kinase responsive to stress B) (STE20-like kinase krsB)	activation of protein kinase activity [GO:0032147]; aggregation involved in sorocarp development [GO:0031152]; cell motility [GO:0048870]; chemotaxis to cAMP [GO:0043327]; negative regulation of cell-substrate adhesion [GO:0010812]; programmed cell death [GO:0012501]; protein autophosphorylation [GO:0046777]; protein phosphorylation [GO:0006468]; signal transduction [GO:0007165]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; metal ion binding [GO:0046872]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005524; GO:0005634; GO:0005737; GO:0006468; GO:0007165; GO:0010812; GO:0012501; GO:0023014; GO:0031098; GO:0031152; GO:0032147; GO:0043327; GO:0046777; GO:0046872; GO:0048870	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN295269_c0_g6	9.353526555	1.86038164	15.95605072	0.000935266	0.008317954	P25341	TRINITY_DN295269_c0_g6_i2	2.60E-08	Serine/threonine-protein kinase KIN82 (EC 2.7.11.1) (Flippase kinase 2)	phospholipid translocation [GO:0045332]; protein phosphorylation [GO:0006468]; response to pheromone triggering conjugation with cellular fusion [GO:0000749]	cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]	ATP binding [GO:0005524]; protein kinase activity [GO:0004672]; protein serine/threonine kinase activity [GO:0004674]	GO:0000749; GO:0004672; GO:0004674; GO:0005524; GO:0005634; GO:0005737; GO:0005886; GO:0006468; GO:0045332	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN295270_c0_g1	-4.761643237	6.948520502	14.92942487	0.000786836	0.007183653	Q8K2V6	TRINITY_DN295270_c0_g1_i2	1.30E-104	Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)	protein import into nucleus [GO:0006606]; ribosomal protein import into nucleus [GO:0006610]	cytosol [GO:0005829]; fibrillar center [GO:0001650]; nuclear envelope [GO:0005635]; nucleus [GO:0005634]	nuclear import signal receptor activity [GO:0061608]; Ran GTPase binding [GO:0008536]	GO:0001650; GO:0005634; GO:0005635; GO:0005829; GO:0006606; GO:0006610; GO:0008536; GO:0061608	reviewed	Mus musculus (Mouse)
TRINITY_DN296278_c0_g3	19.73683602	7.848555912	179.3379035	2.35E-12	9.97E-11	Q9I0K9	TRINITY_DN296278_c0_g3_i1	1.60E-128	Adenylosuccinate lyase (ASL) (EC 4.3.2.2) (Adenylosuccinase) (ASase)	'de novo' AMP biosynthetic process [GO:0044208]; 'de novo' IMP biosynthetic process [GO:0006189]	cytosol [GO:0005829]	"(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity [GO:0070626]; N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [GO:0004018]"	GO:0004018; GO:0005829; GO:0006189; GO:0044208; GO:0070626	reviewed	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
TRINITY_DN296278_c0_g4	12.77256347	2.804129522	26.95227679	7.31E-05	0.000927324	P0AB90	TRINITY_DN296278_c0_g4_i1	8.20E-64	Adenylosuccinate lyase (ASL) (EC 4.3.2.2) (Adenylosuccinase) (ASase)	'de novo' AMP biosynthetic process [GO:0044208]; 'de novo' IMP biosynthetic process [GO:0006189]		"(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity [GO:0070626]; N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [GO:0004018]"	GO:0004018; GO:0006189; GO:0044208; GO:0070626	reviewed	Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
TRINITY_DN296278_c0_g5	22.38349408	7.362704785	177.2895056	1.97E-10	6.48E-09	Q54J34	TRINITY_DN296278_c0_g5_i1	2.60E-129	Adenylosuccinate lyase (ASL) (EC 4.3.2.2) (Adenylosuccinase) (ASase)	'de novo' AMP biosynthetic process [GO:0044208]; 'de novo' IMP biosynthetic process [GO:0006189]; purine nucleotide biosynthetic process [GO:0006164]		"(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity [GO:0070626]; N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [GO:0004018]"	GO:0004018; GO:0006164; GO:0006189; GO:0044208; GO:0070626	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN296362_c0_g1	-2.934342638	8.870157073	13.58228843	0.00122234	0.010336458	Q9FIN7	TRINITY_DN296362_c0_g1_i1	1.70E-300	MAG2-interacting protein 2	"protein maturation [GO:0051604]; protein transport [GO:0015031]; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum [GO:0006890]; vacuolar protein processing [GO:0006624]"	endoplasmic reticulum membrane [GO:0005789]; vacuole [GO:0005773]		GO:0005773; GO:0005789; GO:0006624; GO:0006890; GO:0015031; GO:0051604	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN296362_c0_g2	-14.40548214	5.054849564	36.24156106	5.61E-06	9.24E-05	Q6NVM6	TRINITY_DN296362_c0_g2_i5	3.50E-57	Nucleolar protein 10	"maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000462]"	nucleolus [GO:0005730]; small-subunit processome [GO:0032040]		GO:0000462; GO:0005730; GO:0032040	reviewed	Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
TRINITY_DN296362_c0_g5	-8.533570732	7.299335245	43.55659794	9.77E-07	1.76E-05	Q8LF21	TRINITY_DN296362_c0_g5_i1	4.80E-281	Dynamin-related protein 1C (Dynamin-like protein 5) (Dynamin-like protein C) (Dynamin-like protein DLP1)	cell cycle [GO:0007049]; cell division [GO:0051301]; mitochondrial fission [GO:0000266]; mitochondrion organization [GO:0007005]; pollen maturation [GO:0010152]	cell cortex [GO:0005938]; cell plate [GO:0009504]; cytoplasm [GO:0005737]; membrane [GO:0016020]; microtubule [GO:0005874]; phragmoplast [GO:0009524]; plasma membrane [GO:0005886]; plasmodesma [GO:0009506]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; microtubule binding [GO:0008017]	GO:0000266; GO:0003924; GO:0005525; GO:0005737; GO:0005874; GO:0005886; GO:0005938; GO:0007005; GO:0007049; GO:0008017; GO:0009504; GO:0009506; GO:0009524; GO:0010152; GO:0016020; GO:0051301	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN296376_c0_g1	-11.62297475	3.642558904	20.41747797	0.00020877	0.002324257	A5AEC8	TRINITY_DN296376_c0_g1_i4	1.40E-87	"Arginine biosynthesis bifunctional protein ArgJ, chloroplastic [Cleaved into: Arginine biosynthesis bifunctional protein ArgJ alpha chain; Arginine biosynthesis bifunctional protein ArgJ beta chain] [Includes: Glutamate N-acetyltransferase (GAT) (EC 2.3.1.35) (Ornithine acetyltransferase) (OATase) (Ornithine transacetylase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate synthase) (AGS)]"	arginine biosynthetic process [GO:0006526]	chloroplast stroma [GO:0009570]	acetyl-CoA:L-glutamate N-acetyltransferase activity [GO:0004042]; glutamate N-acetyltransferase activity [GO:0004358]; methione N-acyltransferase activity [GO:0103045]	GO:0004042; GO:0004358; GO:0006526; GO:0009570; GO:0103045	reviewed	Vitis vinifera (Grape)
TRINITY_DN296377_c0_g1	17.99124107	5.040340857	63.36086908	3.86E-07	7.51E-06	Q0DXS3	TRINITY_DN296377_c0_g1_i2	1.70E-79	Probable RNA-dependent RNA polymerase 1 (OsRDR1) (EC 2.7.7.48)	positive regulation of posttranscriptional gene silencing [GO:0060148]; production of siRNA involved in chromatin silencing by small RNA [GO:0070919]; production of siRNA involved in RNA interference [GO:0030422]; response to salicylic acid [GO:0009751]; response to virus [GO:0009615]; wax biosynthetic process [GO:0010025]	nuclear RNA-directed RNA polymerase complex [GO:0031380]; nucleus [GO:0005634]	RNA binding [GO:0003723]; RNA-directed 5'-3' RNA polymerase activity [GO:0003968]	GO:0003723; GO:0003968; GO:0005634; GO:0009615; GO:0009751; GO:0010025; GO:0030422; GO:0031380; GO:0060148; GO:0070919	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN296379_c5_g1	2.415321601	10.81119475	14.20474119	0.000994999	0.008699801	P34909	TRINITY_DN296379_c5_g1_i1	5.40E-11	General negative regulator of transcription subunit 4 (Modulator of transcription 2)	deadenylation-independent decapping of nuclear-transcribed mRNA [GO:0031087]; positive regulation of transcription elongation from RNA polymerase II promoter [GO:0032968]; proteasomal protein catabolic process [GO:0010498]; protein polyubiquitination [GO:0000209]; protein ubiquitination [GO:0016567]	CCR4-NOT complex [GO:0030014]; CCR4-NOT core complex [GO:0030015]; cytoplasm [GO:0005737]; nucleus [GO:0005634]	metal ion binding [GO:0046872]; RNA binding [GO:0003723]; ubiquitin-protein transferase activity [GO:0004842]	GO:0000209; GO:0003723; GO:0004842; GO:0005634; GO:0005737; GO:0010498; GO:0016567; GO:0030014; GO:0030015; GO:0031087; GO:0032968; GO:0046872	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN296706_c2_g1	-3.4919577	7.394107542	9.422667735	0.005418021	0.034082878	Q8L7N4	TRINITY_DN296706_c2_g1_i2	1.40E-70	E3 ubiquitin-protein ligase SP1 (EC 2.3.2.27) (DIAP1-like protein 1) (Protein SUPPRESSOR OF PPI1 LOCUS 1) (RING-type E3 ubiquitin transferase SP1)	organelle organization [GO:0006996]; regulation of protein import into chloroplast stroma [GO:1904215]	chloroplast outer membrane [GO:0009707]; integral component of membrane [GO:0016021]	metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]	GO:0004842; GO:0006996; GO:0009707; GO:0016021; GO:0046872; GO:1904215	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN296757_c3_g1	-2.015335813	9.034766392	8.243043351	0.008624765	0.049524395	P50287	TRINITY_DN296757_c3_g1_i1	1.80E-61	Isoaspartyl peptidase/L-asparaginase 1 (EC 3.4.19.5) (L-asparagine amidohydrolase 1) [Cleaved into: Isoaspartyl peptidase/L-asparaginase 1 subunit alpha; Isoaspartyl peptidase/L-asparaginase 1 subunit beta]	asparagine catabolic process via L-aspartate [GO:0033345]	cytoplasm [GO:0005737]; cytosol [GO:0005829]	asparaginase activity [GO:0004067]; beta-aspartyl-peptidase activity [GO:0008798]	GO:0004067; GO:0005737; GO:0005829; GO:0008798; GO:0033345	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN296758_c2_g1	-4.674421122	7.772814557	19.1279854	0.000221297	0.002420193	Q6Z844	TRINITY_DN296758_c2_g1_i1	1.80E-17	Coatomer subunit zeta-2 (Non-clathrin coat protein zeta2-COP) (Zeta-2-coat protein) (Zeta-COP 2)	"intracellular protein transport [GO:0006886]; intra-Golgi vesicle-mediated transport [GO:0006891]; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum [GO:0006890]"	COPI vesicle coat [GO:0030126]; Golgi membrane [GO:0000139]		GO:0000139; GO:0006886; GO:0006890; GO:0006891; GO:0030126	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN296758_c2_g5	6.057082783	11.4868287	61.4107997	6.04E-08	1.39E-06	P47927	TRINITY_DN296758_c2_g5_i2	1.30E-60	Floral homeotic protein APETALA 2	cell differentiation [GO:0030154]; flower development [GO:0009908]; meristem maintenance [GO:0010073]; plant ovule development [GO:0048481]; seed development [GO:0048316]; specification of floral organ identity [GO:0010093]	nucleus [GO:0005634]	DNA binding [GO:0003677]; DNA-binding transcription factor activity [GO:0003700]	GO:0003677; GO:0003700; GO:0005634; GO:0009908; GO:0010073; GO:0010093; GO:0030154; GO:0048316; GO:0048481	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN296759_c4_g1	12.39731974	4.067218591	18.88425675	0.000237287	0.002523726	P02556	TRINITY_DN296759_c4_g1_i2	9.70E-14	Tubulin beta chain (Beta-tubulin) (Fragment)	microtubule-based process [GO:0007017]	cytoplasm [GO:0005737]; microtubule [GO:0005874]	GTP binding [GO:0005525]; structural constituent of cytoskeleton [GO:0005200]	GO:0005200; GO:0005525; GO:0005737; GO:0005874; GO:0007017	reviewed	Lytechinus pictus (Painted sea urchin)
TRINITY_DN296771_c4_g2	11.11570629	2.227957151	12.69002155	0.002391325	0.018184649	P27165	TRINITY_DN296771_c4_g2_i1	1.00E-14	Calmodulin (CaM)	calcium-mediated signaling [GO:0019722]		calcium ion binding [GO:0005509]	GO:0005509; GO:0019722	reviewed	Phytophthora infestans (Potato late blight fungus) (Botrytis infestans)
TRINITY_DN296781_c0_g1	-5.852416819	8.209179052	30.12051442	1.39E-05	0.000206516	Q5M755	TRINITY_DN296781_c0_g1_i1	3.30E-08	"Fibrillin-5, chloroplastic (Plastid-lipid-associated protein 7)"	plastoquinone biosynthetic process [GO:0010236]	chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]		GO:0009507; GO:0009570; GO:0010236	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN296783_c0_g1	-4.065574129	9.235356015	19.00476121	0.000229229	0.00246342	Q93ZB6	TRINITY_DN296783_c0_g1_i1	5.30E-167	"Uroporphyrinogen decarboxylase 1, chloroplastic (UPD1) (URO-D1) (EC 4.1.1.37)"	chlorophyll biosynthetic process [GO:0015995]; heme biosynthetic process [GO:0006783]; protoporphyrinogen IX biosynthetic process [GO:0006782]; response to cadmium ion [GO:0046686]	chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]	uroporphyrinogen decarboxylase activity [GO:0004853]	GO:0004853; GO:0005829; GO:0006782; GO:0006783; GO:0009507; GO:0009570; GO:0015995; GO:0046686	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN296786_c0_g1	-8.704040398	6.2021687	20.90154972	0.000134916	0.001600592	Q39079	TRINITY_DN296786_c0_g1_i1	2.20E-50	Chaperone protein dnaJ 13 (AtDjB13) (AtJ13)	response to very low light intensity stimulus [GO:0055122]; vegetative to reproductive phase transition of meristem [GO:0010228]	integral component of membrane [GO:0016021]; plastid [GO:0009536]		GO:0009536; GO:0010228; GO:0016021; GO:0055122	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN296786_c0_g3	4.993462226	12.90302703	44.89450195	7.73E-07	1.42E-05	Q39079	TRINITY_DN296786_c0_g3_i6	1.90E-08	Chaperone protein dnaJ 13 (AtDjB13) (AtJ13)	response to very low light intensity stimulus [GO:0055122]; vegetative to reproductive phase transition of meristem [GO:0010228]	integral component of membrane [GO:0016021]; plastid [GO:0009536]		GO:0009536; GO:0010228; GO:0016021; GO:0055122	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN296791_c0_g1	-10.20166425	7.016333	47.73165155	4.78E-07	9.14E-06	Q9FUZ0	TRINITY_DN296791_c0_g1_i1	1.40E-81	"Peptide deformylase 1A, chloroplastic (PDF 1A) (EC 3.5.1.88) (Polypeptide deformylase)"	co-translational protein modification [GO:0043686]; N-terminal protein amino acid modification [GO:0031365]; peptidyl-methionine modification [GO:0018206]; translation [GO:0006412]	chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; mitochondrion [GO:0005739]; plant-type cell wall [GO:0009505]	metal ion binding [GO:0046872]; peptide deformylase activity [GO:0042586]	GO:0005739; GO:0006412; GO:0009505; GO:0009507; GO:0009570; GO:0018206; GO:0031365; GO:0042586; GO:0043686; GO:0046872	reviewed	Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
TRINITY_DN296798_c5_g3	10.49791174	4.473156627	14.34286839	0.000951089	0.008410341	P33188	TRINITY_DN296798_c5_g3_i2	2.50E-62	Tubulin beta chain (Beta-tubulin)	microtubule-based process [GO:0007017]; microtubule cytoskeleton organization [GO:0000226]; mitotic cell cycle [GO:0000278]	cytoplasm [GO:0005737]; microtubule [GO:0005874]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; structural constituent of cytoskeleton [GO:0005200]	GO:0000226; GO:0000278; GO:0003924; GO:0005200; GO:0005525; GO:0005737; GO:0005874; GO:0007017	reviewed	Paramecium tetraurelia
TRINITY_DN298147_c1_g1	-8.142383571	5.191622641	19.04701106	0.000226475	0.002459442	Q84J46	TRINITY_DN298147_c1_g1_i1	3.00E-69	Pentatricopeptide repeat-containing protein At3g29290 (Protein EMBRYO DEFECTIVE 2076)					reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298149_c0_g1	13.56302918	3.439624582	15.6688406	0.001011486	0.008818451	Q9SLX0	TRINITY_DN298149_c0_g1_i1	3.00E-24	Importin subunit alpha-1b	NLS-bearing protein import into nucleus [GO:0006607]	cytosol [GO:0005829]; nuclear pore [GO:0005643]; nucleoplasm [GO:0005654]; perinuclear region of cytoplasm [GO:0048471]	nuclear import signal receptor activity [GO:0061608]; nuclear localization sequence binding [GO:0008139]	GO:0005643; GO:0005654; GO:0005829; GO:0006607; GO:0008139; GO:0048471; GO:0061608	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN298161_c0_g1	-2.874940712	8.133758349	10.72538989	0.003320371	0.023355788	B1AVH7	TRINITY_DN298161_c0_g1_i1	3.60E-09	TBC1 domain family member 2A	activation of GTPase activity [GO:0090630]; intracellular protein transport [GO:0006886]; positive regulation of GTPase activity [GO:0043547]	cell junction [GO:0030054]; cytoplasmic vesicle [GO:0031410]; cytosol [GO:0005829]; nucleus [GO:0005634]	cadherin binding [GO:0045296]; GTPase activator activity [GO:0005096]; Rab GTPase binding [GO:0017137]	GO:0005096; GO:0005634; GO:0005829; GO:0006886; GO:0017137; GO:0030054; GO:0031410; GO:0043547; GO:0045296; GO:0090630	reviewed	Mus musculus (Mouse)
TRINITY_DN298164_c0_g1	19.15074161	5.665221859	77.75443601	9.32E-08	2.03E-06	Q2UU67	TRINITY_DN298164_c0_g1_i1	3.20E-19	Mitochondrial glycine transporter (Solute carrier family 25 member 38 homolog)	glycine import into mitochondrion [GO:1904983]	integral component of membrane [GO:0016021]; mitochondrial inner membrane [GO:0005743]	glycine transmembrane transporter activity [GO:0015187]	GO:0005743; GO:0015187; GO:0016021; GO:1904983	reviewed	Aspergillus oryzae (strain ATCC 42149 / RIB 40) (Yellow koji mold)
TRINITY_DN298165_c0_g2	-3.015528577	9.74971857	24.45149707	5.33E-05	0.000704784	Q8GXG1	TRINITY_DN298165_c0_g2_i2	3.90E-132	Probable isoaspartyl peptidase/L-asparaginase 2 (EC 3.4.19.5) (L-asparagine amidohydrolase 2) [Cleaved into: Isoaspartyl peptidase/L-asparaginase 2 subunit alpha; Isoaspartyl peptidase/L-asparaginase 2 subunit beta]	asparagine catabolic process via L-aspartate [GO:0033345]	cytoplasm [GO:0005737]	asparaginase activity [GO:0004067]; beta-aspartyl-peptidase activity [GO:0008798]	GO:0004067; GO:0005737; GO:0008798; GO:0033345	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298167_c1_g1	-3.882038211	8.812790464	17.39421289	0.00036711	0.003716585	P40940	TRINITY_DN298167_c1_g1_i2	1.30E-88	ADP-ribosylation factor 3 (AtARF3) (Protein ARF-LIKE 1) (AtARL1)	intracellular protein transport [GO:0006886]; response to cadmium ion [GO:0046686]; vesicle-mediated transport [GO:0016192]	cytoplasm [GO:0005737]; Golgi apparatus [GO:0005794]; Golgi stack [GO:0005795]; membrane [GO:0016020]; plasma membrane [GO:0005886]	GTP binding [GO:0005525]	GO:0005525; GO:0005737; GO:0005794; GO:0005795; GO:0005886; GO:0006886; GO:0016020; GO:0016192; GO:0046686	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298173_c0_g1	22.2909543	11.79722514	290.9803932	1.46E-14	2.06E-12	Q9FMU6	TRINITY_DN298173_c0_g1_i1	1.40E-56	"Mitochondrial phosphate carrier protein 3, mitochondrial (Mitochondrial phosphate transporter 3) (MPT3) (Phosphate transporter 3;1)"	phosphate ion transmembrane transport [GO:0035435]; response to salt stress [GO:0009651]	cell wall [GO:0005618]; chloroplast [GO:0009507]; integral component of mitochondrial inner membrane [GO:0031305]; membrane [GO:0016020]; mitochondrion [GO:0005739]; vacuolar membrane [GO:0005774]	inorganic phosphate transmembrane transporter activity [GO:0005315]	GO:0005315; GO:0005618; GO:0005739; GO:0005774; GO:0009507; GO:0009651; GO:0016020; GO:0031305; GO:0035435	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298177_c0_g1	-4.45051932	7.025120195	15.34028191	0.000690334	0.006435492	Q9FJY7	TRINITY_DN298177_c0_g1_i1	7.90E-92	Pentatricopeptide repeat-containing protein At5g66520	chloroplast RNA modification [GO:1900865]; cytidine to uridine editing [GO:0016554]; RNA modification [GO:0009451]	chloroplast [GO:0009507]	zinc ion binding [GO:0008270]	GO:0008270; GO:0009451; GO:0009507; GO:0016554; GO:1900865	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298179_c0_g2	2.425094503	10.92332673	10.02802484	0.004302816	0.028577713	Q9LZJ5	TRINITY_DN298179_c0_g2_i1	0	ABC transporter C family member 14 (ABC transporter ABCC.14) (AtABCC14) (EC 7.6.2.2) (ATP-energized glutathione S-conjugate pump 10) (Glutathione S-conjugate-transporting ATPase 10) (Multidrug resistance-associated protein 10)	transmembrane transport [GO:0055085]	Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plant-type vacuole [GO:0000325]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]	ATPase activity [GO:0016887]; ATPase-coupled transmembrane transporter activity [GO:0042626]; ATP binding [GO:0005524]	GO:0000325; GO:0005524; GO:0005773; GO:0005774; GO:0005794; GO:0016020; GO:0016021; GO:0016887; GO:0042626; GO:0055085	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298237_c0_g1	-5.714774864	6.190162536	16.66628159	0.000457292	0.004464726	Q6YWK8	TRINITY_DN298237_c0_g1_i1	1.40E-20	Probable glucomannan 4-beta-mannosyltransferase 11 (EC 2.4.1.32) (Cellulose synthase-like protein A11) (OsCslA11) (Glucomannan synthase) (Mannan synthase 11)	cell wall organization [GO:0071555]	Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]	"glucomannan 4-beta-mannosyltransferase activity [GO:0047259]; mannan synthase activity [GO:0051753]; transferase activity, transferring glycosyl groups [GO:0016757]"	GO:0000139; GO:0005794; GO:0016021; GO:0016757; GO:0047259; GO:0051753; GO:0071555	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN298237_c0_g2	-6.467742601	6.00472762	13.75738067	0.001153133	0.009886276	Q9HCU8	TRINITY_DN298237_c0_g2_i1	7.20E-09	DNA polymerase delta subunit 4 (DNA polymerase delta subunit p12)	"DNA damage response, detection of DNA damage [GO:0042769]; DNA-dependent DNA replication [GO:0006261]; mismatch repair [GO:0006298]; nucleotide-excision repair, DNA gap filling [GO:0006297]; nucleotide-excision repair, DNA incision [GO:0033683]; nucleotide-excision repair, DNA incision, 5'-to lesion [GO:0006296]; telomere maintenance [GO:0000723]; telomere maintenance via semi-conservative replication [GO:0032201]; transcription-coupled nucleotide-excision repair [GO:0006283]; translesion synthesis [GO:0019985]"	cytosol [GO:0005829]; delta DNA polymerase complex [GO:0043625]; mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]		GO:0000723; GO:0005634; GO:0005654; GO:0005730; GO:0005739; GO:0005829; GO:0006261; GO:0006283; GO:0006296; GO:0006297; GO:0006298; GO:0019985; GO:0032201; GO:0033683; GO:0042769; GO:0043625	reviewed	Homo sapiens (Human)
TRINITY_DN298417_c1_g1	6.692674134	3.843353761	8.519062572	0.007720519	0.0455143	Q9ZW86	TRINITY_DN298417_c1_g1_i2	3.00E-09	Prolyl 4-hydroxylase 1 (AtP4H-1) (AtP4H1) (EC 1.14.11.2)	peptidyl-proline hydroxylation to 4-hydroxy-L-proline [GO:0018401]	endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; integral component of membrane [GO:0016021]	iron ion binding [GO:0005506]; L-ascorbic acid binding [GO:0031418]; procollagen-proline 4-dioxygenase activity [GO:0004656]	GO:0004656; GO:0005506; GO:0005783; GO:0005789; GO:0005794; GO:0016021; GO:0018401; GO:0031418	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298447_c0_g1	-4.873170316	6.934767975	17.1996533	0.000389141	0.003885133	Q8RWR1	TRINITY_DN298447_c0_g1_i1	1.40E-101	Lysine-specific demethylase JMJ30 (AtJMJ30) (EC 1.14.11.-) (JmjC domain-containing protein 30) (Jumonji domain-containing protein 5) (AtJMJD5)	circadian rhythm [GO:0007623]; flower development [GO:0009908]; histone H3-K36 demethylation [GO:0070544]; regulation of circadian rhythm [GO:0042752]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	2-oxoglutarate-dependent dioxygenase activity [GO:0016706]; DNA-binding transcription factor activity [GO:0003700]; histone methyltransferase activity (H3-K36 specific) [GO:0046975]; metal ion binding [GO:0046872]	GO:0003700; GO:0005634; GO:0005737; GO:0007623; GO:0009908; GO:0016706; GO:0042752; GO:0046872; GO:0046975; GO:0070544	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298447_c1_g1	-4.580385104	10.2614443	33.90881923	6.18E-06	9.95E-05	Q94AM1	TRINITY_DN298447_c1_g1_i1	2.30E-307	"Organellar oligopeptidase A, chloroplastic/mitochondrial (EC 3.4.24.70) (Thimet metalloendopeptidase 1) (Zincin-like metalloproteases family protein 1)"	peptide metabolic process [GO:0006518]; proteolysis [GO:0006508]	chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; mitochondrial matrix [GO:0005759]	metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]	GO:0004222; GO:0005759; GO:0005829; GO:0006508; GO:0006518; GO:0009507; GO:0009570; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298449_c3_g4	-4.285516744	7.266694133	14.88432925	0.000798295	0.007245524	P40392	TRINITY_DN298449_c3_g4_i1	3.90E-47	Ras-related protein RIC1	endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; intracellular protein transport [GO:0006886]; Rab protein signal transduction [GO:0032482]	endoplasmic reticulum membrane [GO:0005789]; Golgi membrane [GO:0000139]; plasma membrane [GO:0005886]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]	GO:0000139; GO:0003924; GO:0005525; GO:0005789; GO:0005886; GO:0006886; GO:0006888; GO:0032482	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN298449_c4_g2	-7.695757893	4.084941395	8.555069961	0.00761047	0.045209987	P62822	TRINITY_DN298449_c4_g2_i3	1.50E-44	Ras-related protein Rab-1A	autophagosome assembly [GO:0000045]; autophagy [GO:0006914]; cell migration [GO:0016477]; defense response to bacterium [GO:0042742]; endocytosis [GO:0006897]; endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; growth hormone secretion [GO:0030252]; interleukin-8 secretion [GO:0072606]; intracellular protein transport [GO:0006886]; Rab protein signal transduction [GO:0032482]; vesicle transport along microtubule [GO:0047496]	cytosol [GO:0005829]; early endosome [GO:0005769]; endoplasmic reticulum membrane [GO:0005789]; exocytic vesicle [GO:0070382]; Golgi membrane [GO:0000139]; melanosome [GO:0042470]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]	GO:0000045; GO:0000139; GO:0003924; GO:0005525; GO:0005769; GO:0005789; GO:0005829; GO:0006886; GO:0006888; GO:0006897; GO:0006914; GO:0016477; GO:0030252; GO:0032482; GO:0042470; GO:0042742; GO:0047496; GO:0070382; GO:0072606	reviewed	Canis lupus familiaris (Dog) (Canis familiaris)
TRINITY_DN298472_c6_g2	-2.65760953	9.717532192	10.96685706	0.00303991	0.021956702	Q9M1K3	TRINITY_DN298472_c6_g2_i1	5.70E-48	Probable aquaporin SIP2-1 (Small basic intrinsic protein 2-1) (AtSIP2;1)		endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]	channel activity [GO:0015267]	GO:0005789; GO:0015267; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298472_c6_g3	-3.191911255	8.89315753	13.91928385	0.001092937	0.009448712	Q6NWJ4	TRINITY_DN298472_c6_g3_i1	2.10E-58	DnaJ homolog subfamily C member 2	"chromatin organization [GO:0006325]; positive regulation of transcription, DNA-templated [GO:0045893]"	cytosol [GO:0005829]; nucleus [GO:0005634]	chromatin binding [GO:0003682]; DNA binding [GO:0003677]; histone binding [GO:0042393]; ubiquitin modification-dependent histone binding [GO:0061649]	GO:0003677; GO:0003682; GO:0005634; GO:0005829; GO:0006325; GO:0042393; GO:0045893; GO:0061649	reviewed	Danio rerio (Zebrafish) (Brachydanio rerio)
TRINITY_DN298476_c0_g1	-6.17949162	9.30297943	66.94454582	2.88E-08	7.25E-07	Q9LD55	TRINITY_DN298476_c0_g1_i3	1.20E-263	Eukaryotic translation initiation factor 3 subunit A (eIF3a) (Eukaryotic translation initiation factor 3 large subunit) (Eukaryotic translation initiation factor 3 subunit 10) (eIF-3-theta) (p114)	formation of cytoplasmic translation initiation complex [GO:0001732]; translational initiation [GO:0006413]; translation reinitiation [GO:0002188]	"cytosol [GO:0005829]; eukaryotic 43S preinitiation complex [GO:0016282]; eukaryotic 48S preinitiation complex [GO:0033290]; eukaryotic translation initiation factor 3 complex [GO:0005852]; eukaryotic translation initiation factor 3 complex, eIF3e [GO:0071540]; eukaryotic translation initiation factor 3 complex, eIF3m [GO:0071541]; multi-eIF complex [GO:0043614]; plasma membrane [GO:0005886]"	mRNA binding [GO:0003729]; translation initiation factor activity [GO:0003743]	GO:0001732; GO:0002188; GO:0003729; GO:0003743; GO:0005829; GO:0005852; GO:0005886; GO:0006413; GO:0016282; GO:0033290; GO:0043614; GO:0071540; GO:0071541	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298602_c0_g1	21.56221583	10.1425272	209.9009642	4.62E-13	2.70E-11	Q9HZP7	TRINITY_DN298602_c0_g1_i1	4.00E-82	Electron transfer flavoprotein subunit alpha (Alpha-ETF) (Electron transfer flavoprotein large subunit) (ETFLS)	fatty acid beta-oxidation using acyl-CoA dehydrogenase [GO:0033539]		electron transfer activity [GO:0009055]; flavin adenine dinucleotide binding [GO:0050660]; oxidoreductase activity [GO:0016491]	GO:0009055; GO:0016491; GO:0033539; GO:0050660	reviewed	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
TRINITY_DN298605_c1_g1	9.800035076	3.518438582	12.04087239	0.0020712	0.015985946	O13755	TRINITY_DN298605_c1_g1_i1	4.10E-74	Fumarate reductase (FRDS) (EC 1.3.1.6) (FAD-dependent oxidoreductase) (NADH-dependent fumarate reductase)	fumarate metabolic process [GO:0006106]; tricarboxylic acid cycle [GO:0006099]	cytosol [GO:0005829]; mitochondrion [GO:0005739]; nucleus [GO:0005634]	fumarate reductase (NADH) activity [GO:0016156]; succinate dehydrogenase activity [GO:0000104]	GO:0000104; GO:0005634; GO:0005739; GO:0005829; GO:0006099; GO:0006106; GO:0016156	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN298615_c0_g2	2.935333652	11.8035407	9.388774418	0.005489244	0.034460872	Q9ZQG9	TRINITY_DN298615_c0_g2_i1	2.80E-111	"Glucan endo-1,3-beta-glucosidase 14 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 14) ((1->3)-beta-glucanase 14) (Beta-1,3-endoglucanase 14) (Beta-1,3-glucanase 14)"	carbohydrate metabolic process [GO:0005975]; cell wall organization [GO:0071555]; defense response [GO:0006952]	anchored component of plasma membrane [GO:0046658]; cell wall [GO:0005618]; cytoplasm [GO:0005737]; extracellular region [GO:0005576]; nucleus [GO:0005634]	"glucan endo-1,3-beta-D-glucosidase activity [GO:0042973]"	GO:0005576; GO:0005618; GO:0005634; GO:0005737; GO:0005975; GO:0006952; GO:0042973; GO:0046658; GO:0071555	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298618_c0_g1	20.03636742	8.159898088	218.5675958	3.03E-13	1.84E-11	A2XUN8	TRINITY_DN298618_c0_g1_i1	3.90E-71	Pachytene checkpoint protein 2 homolog	meiotic cell cycle [GO:0051321]		ATP binding [GO:0005524]	GO:0005524; GO:0051321	reviewed	Oryza sativa subsp. indica (Rice)
TRINITY_DN298802_c0_g2	-9.965151155	10.13913627	36.3548279	3.76E-06	6.32E-05	Q9M7I7	TRINITY_DN298802_c0_g2_i1	3.50E-11	"Chlorophyllase-2, chloroplastic (AtCLH2) (EC 3.1.1.14) (Chlorophyll-chlorophyllido hydrolase 2) (Chlase 2)"	chlorophyll catabolic process [GO:0015996]	chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]	chlorophyllase activity [GO:0047746]; pheophytinase b activity [GO:0102293]	GO:0009507; GO:0015996; GO:0031969; GO:0047746; GO:0102293	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298805_c0_g1	23.94626963	10.73463303	288.2931403	1.62E-14	2.08E-12	A9UNU6	TRINITY_DN298805_c0_g1_i2	3.40E-72	Bystin	rRNA processing [GO:0006364]	"cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; preribosome, small subunit precursor [GO:0030688]"	snoRNA binding [GO:0030515]	GO:0005634; GO:0005730; GO:0005737; GO:0006364; GO:0030515; GO:0030688	reviewed	Monosiga brevicollis (Choanoflagellate)
TRINITY_DN298805_c0_g2	19.06671487	5.538394032	81.14868712	6.89E-08	1.56E-06	Q93VG8	TRINITY_DN298805_c0_g2_i2	1.20E-08	DeSI-like protein At4g17486 (EC 3.4.-.-)			peptidase activity [GO:0008233]	GO:0008233	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298805_c0_g4	20.84549864	8.362578801	214.1955029	3.69E-12	1.52E-10	A9UNU6	TRINITY_DN298805_c0_g4_i1	3.10E-72	Bystin	rRNA processing [GO:0006364]	"cytoplasm [GO:0005737]; nucleolus [GO:0005730]; nucleus [GO:0005634]; preribosome, small subunit precursor [GO:0030688]"	snoRNA binding [GO:0030515]	GO:0005634; GO:0005730; GO:0005737; GO:0006364; GO:0030515; GO:0030688	reviewed	Monosiga brevicollis (Choanoflagellate)
TRINITY_DN298831_c0_g1	17.2165317	7.535662756	75.03492539	3.30E-08	8.12E-07	P00434	TRINITY_DN298831_c0_g1_i1	4.30E-37	Peroxidase P7 (EC 1.11.1.7) (TP7)	hydrogen peroxide catabolic process [GO:0042744]; response to oxidative stress [GO:0006979]		heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]	GO:0004601; GO:0006979; GO:0020037; GO:0042744; GO:0046872	reviewed	Brassica rapa subsp. rapa (Turnip)
TRINITY_DN298832_c0_g1	-4.542429364	7.864751956	21.71660217	0.000108248	0.001324216	Q9LQI7	TRINITY_DN298832_c0_g1_i1	3.20E-18	Probable complex I intermediate-associated protein 30	"mitochondrial electron transport, NADH to ubiquinone [GO:0006120]; mitochondrial respiratory chain complex I assembly [GO:0032981]"	mitochondrial respiratory chain complex I [GO:0005747]; mitochondrion [GO:0005739]	unfolded protein binding [GO:0051082]	GO:0005739; GO:0005747; GO:0006120; GO:0032981; GO:0051082	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298832_c1_g1	-9.16027215	7.389671549	54.82041168	1.56E-07	3.20E-06	A4FV84	TRINITY_DN298832_c1_g1_i6	3.50E-13	mRNA turnover protein 4 homolog (Ribosome assembly factor MRTO4)	nuclear-transcribed mRNA catabolic process [GO:0000956]; ribosomal large subunit assembly [GO:0000027]; ribosomal large subunit biogenesis [GO:0042273]; rRNA processing [GO:0006364]	"cytoplasm [GO:0005737]; nucleolus [GO:0005730]; preribosome, large subunit precursor [GO:0030687]"		GO:0000027; GO:0000956; GO:0005730; GO:0005737; GO:0006364; GO:0030687; GO:0042273	reviewed	Bos taurus (Bovine)
TRINITY_DN298834_c0_g1	20.67389074	9.588179798	250.4666256	7.22E-14	6.04E-12	Q10179	TRINITY_DN298834_c0_g1_i1	5.30E-77	Putative glycine--tRNA ligase (EC 6.1.1.14) (Diadenosine tetraphosphate synthetase) (Ap4A synthetase) (EC 2.7.7.-) (Glycyl-tRNA synthetase) (GlyRS)	cytoplasmic translation [GO:0002181]; diadenosine tetraphosphate biosynthetic process [GO:0015966]; glycyl-tRNA aminoacylation [GO:0006426]; mitochondrial glycyl-tRNA aminoacylation [GO:0070150]; mitochondrial translation [GO:0032543]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]	ATP binding [GO:0005524]; glycine-tRNA ligase activity [GO:0004820]; protein dimerization activity [GO:0046983]; transferase activity [GO:0016740]	GO:0002181; GO:0004820; GO:0005524; GO:0005737; GO:0005739; GO:0005759; GO:0005829; GO:0006426; GO:0015966; GO:0016740; GO:0032543; GO:0046983; GO:0070150	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN298834_c0_g2	20.75714517	8.413916001	205.4827865	5.76E-13	3.30E-11	Q9HA82	TRINITY_DN298834_c0_g2_i1	1.60E-17	Ceramide synthase 4 (CerS4) (LAG1 longevity assurance homolog 4)	ceramide biosynthetic process [GO:0046513]; sphingolipid biosynthetic process [GO:0030148]	endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; nuclear membrane [GO:0031965]	DNA binding [GO:0003677]; sphingosine N-acyltransferase activity [GO:0050291]	GO:0003677; GO:0005783; GO:0005789; GO:0016021; GO:0030148; GO:0031965; GO:0046513; GO:0050291	reviewed	Homo sapiens (Human)
TRINITY_DN298836_c0_g1	-3.15611018	9.296625306	16.3376987	0.000505697	0.004875803	Q84RR2	TRINITY_DN298836_c0_g1_i1	1.00E-161	Probable E3 ubiquitin-protein ligase ARI2 (EC 2.3.2.31) (ARIADNE-like protein ARI2) (Protein ariadne homolog 2) (RING-type E3 ubiquitin transferase ARI2)	positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436]; protein polyubiquitination [GO:0000209]; ubiquitin-dependent protein catabolic process [GO:0006511]	cytoplasm [GO:0005737]; ubiquitin ligase complex [GO:0000151]	metal ion binding [GO:0046872]; ubiquitin conjugating enzyme binding [GO:0031624]; ubiquitin protein ligase activity [GO:0061630]	GO:0000151; GO:0000209; GO:0005737; GO:0006511; GO:0031624; GO:0032436; GO:0046872; GO:0061630	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298841_c2_g1	17.43347317	10.45129289	276.9086547	2.48E-14	2.65E-12	Q86FP7	TRINITY_DN298841_c2_g1_i1	3.10E-57	40S ribosomal protein S23	cytoplasmic translation [GO:0002181]	cytosolic small ribosomal subunit [GO:0022627]; polysomal ribosome [GO:0042788]; rough endoplasmic reticulum [GO:0005791]	structural constituent of ribosome [GO:0003735]	GO:0002181; GO:0003735; GO:0005791; GO:0022627; GO:0042788	reviewed	Dermacentor variabilis (American dog tick)
TRINITY_DN298843_c0_g1	21.39968362	7.382539745	162.5756465	4.52E-11	1.59E-09	Q55D99	TRINITY_DN298843_c0_g1_i1	5.20E-62	Serine/threonine-protein kinase pakA (dPAKa) (EC 2.7.11.1) (dpak1)	activation of protein kinase activity [GO:0032147]; aggregation involved in sorocarp development [GO:0031152]; cell motility [GO:0048870]; chemotaxis [GO:0006935]; chemotaxis to cAMP [GO:0043327]; establishment of cell polarity [GO:0030010]; establishment or maintenance of cell polarity [GO:0007163]; mitotic cytokinesis [GO:0000281]; myosin II filament assembly [GO:0031036]; phagocytosis [GO:0006909]; positive regulation of cytokinesis [GO:0032467]; regulation of sorocarp development [GO:0031156]; response to differentiation-inducing factor 1 [GO:1903013]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098]	cell cortex [GO:0005938]; cell trailing edge [GO:0031254]; cleavage furrow [GO:0032154]; cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]; cytosol [GO:0005829]; phagocytic cup base [GO:0097204]	ATP binding [GO:0005524]; metal ion binding [GO:0046872]; myosin II binding [GO:0045159]; protein serine/threonine kinase activity [GO:0004674]	GO:0000281; GO:0004674; GO:0005524; GO:0005737; GO:0005829; GO:0005856; GO:0005938; GO:0006909; GO:0006935; GO:0007163; GO:0023014; GO:0030010; GO:0031036; GO:0031098; GO:0031152; GO:0031156; GO:0031254; GO:0032147; GO:0032154; GO:0032467; GO:0043327; GO:0045159; GO:0046872; GO:0048870; GO:0097204; GO:1903013	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN298848_c3_g2	8.080121341	4.129630572	10.32568312	0.003849086	0.026361615	O04204	TRINITY_DN298848_c3_g2_i1	3.80E-18	60S acidic ribosomal protein P0-1	cytoplasmic translation [GO:0002181]; ribosomal large subunit assembly [GO:0000027]	cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]	large ribosomal subunit rRNA binding [GO:0070180]; structural constituent of ribosome [GO:0003735]	GO:0000027; GO:0002181; GO:0003735; GO:0022625; GO:0022626; GO:0070180	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298862_c0_g3	-5.97075688	6.996808163	23.52888741	6.73E-05	0.000857709	Q8VWF1	TRINITY_DN298862_c0_g3_i1	1.10E-109	SH3 domain-containing protein 2	cell plate formation involved in plant-type cell wall biogenesis [GO:0009920]; clathrin-dependent endocytosis [GO:0072583]	autophagosome membrane [GO:0000421]; cell plate [GO:0009504]; clathrin-coated vesicle [GO:0030136]; cytosol [GO:0005829]; endosome [GO:0005768]; late endosome [GO:0005770]; nucleus [GO:0005634]; plasma membrane [GO:0005886]	ubiquitin binding [GO:0043130]	GO:0000421; GO:0005634; GO:0005768; GO:0005770; GO:0005829; GO:0005886; GO:0009504; GO:0009920; GO:0030136; GO:0043130; GO:0072583	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN298863_c0_g2	-3.788934189	6.740987651	10.63266079	0.003435516	0.023894207	Q8S8S9	TRINITY_DN298863_c0_g2_i1	4.80E-65	Methylesterase 1 (AtMES1) (EC 3.1.1.-)	"defense response to fungus, incompatible interaction [GO:0009817]; jasmonic acid metabolic process [GO:0009694]; salicylic acid metabolic process [GO:0009696]; systemic acquired resistance [GO:0009627]"		"hydrolase activity, acting on ester bonds [GO:0016788]; methyl indole-3-acetate esterase activity [GO:0080030]; methyl jasmonate esterase activity [GO:0080032]; methyl salicylate esterase activity [GO:0080031]"	GO:0009627; GO:0009694; GO:0009696; GO:0009817; GO:0016788; GO:0080030; GO:0080031; GO:0080032	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299020_c1_g1	-8.612440042	7.726178556	50.70391455	2.95E-07	5.78E-06	Q940Q8	TRINITY_DN299020_c1_g1_i1	9.60E-217	"Probable beta-1,4-xylosyltransferase IRX10L (EC 2.4.2.-) (Glucuronoxylan glucuronosyltransferase 1) (AtGUT1) (Glucuronoxylan glucuronosyltransferase 2) (AtGUT2) (Protein IRREGULAR XYLEM 10-like) (Xylan xylosyltransferase IRX10L)"	cell wall biogenesis [GO:0042546]; cell wall organization [GO:0071555]; glucuronoxylan biosynthetic process [GO:0010417]; plant-type secondary cell wall biogenesis [GO:0009834]; protein glycosylation [GO:0006486]; xylan biosynthetic process [GO:0045492]	endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]	"1,4-beta-D-xylan synthase activity [GO:0047517]; glucuronoxylan glucuronosyltransferase activity [GO:0080116]"	GO:0000139; GO:0005768; GO:0005794; GO:0005802; GO:0006486; GO:0009834; GO:0010417; GO:0016021; GO:0042546; GO:0045492; GO:0047517; GO:0071555; GO:0080116	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299024_c0_g1	9.903917476	3.768242942	11.19822148	0.003209647	0.022927307	Q162S8	TRINITY_DN299024_c0_g1_i1	2.60E-29	ATP synthase gamma chain (ATP synthase F1 sector gamma subunit) (F-ATPase gamma subunit)	plasma membrane ATP synthesis coupled proton transport [GO:0042777]	"plasma membrane [GO:0005886]; proton-transporting ATP synthase complex, catalytic core F(1) [GO:0045261]"	"ATP binding [GO:0005524]; proton-transporting ATP synthase activity, rotational mechanism [GO:0046933]"	GO:0005524; GO:0005886; GO:0042777; GO:0045261; GO:0046933	reviewed	Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans)
TRINITY_DN299032_c0_g1	20.89254435	8.625779251	185.0140817	1.71E-12	7.63E-11	Q9SBJ1	TRINITY_DN299032_c0_g1_i1	1.20E-69	"[Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial (AtPDHK) (Pyruvate dehydrogenase kinase) (EC 2.7.11.2)"	protein autophosphorylation [GO:0046777]	mitochondrion [GO:0005739]	ATP binding [GO:0005524]; histidine phosphotransfer kinase activity [GO:0009927]; protein homodimerization activity [GO:0042803]; pyruvate dehydrogenase (acetyl-transferring) kinase activity [GO:0004740]	GO:0004740; GO:0005524; GO:0005739; GO:0009927; GO:0042803; GO:0046777	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299040_c0_g1	21.03163828	13.18558574	153.860441	1.12E-11	4.21E-10	Q943E6	TRINITY_DN299040_c0_g1_i1	6.60E-10	16.9 kDa class I heat shock protein 2 (16.9 kDa heat shock protein 2) (OsHsp16.9B)	protein complex oligomerization [GO:0051259]; protein folding [GO:0006457]; response to heat [GO:0009408]; response to hydrogen peroxide [GO:0042542]; response to reactive oxygen species [GO:0000302]; response to salt stress [GO:0009651]	cytoplasm [GO:0005737]	protein self-association [GO:0043621]; unfolded protein binding [GO:0051082]	GO:0000302; GO:0005737; GO:0006457; GO:0009408; GO:0009651; GO:0042542; GO:0043621; GO:0051082; GO:0051259	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN299042_c0_g1	-10.96159259	2.937953466	11.51101626	0.00323645	0.023027154	Q5ZKE7	TRINITY_DN299042_c0_g1_i2	8.10E-51	UMP-CMP kinase (EC 2.7.4.14) (Deoxycytidylate kinase) (CK) (dCMP kinase) (Nucleoside-diphosphate kinase) (EC 2.7.4.6) (Uridine monophosphate/cytidine monophosphate kinase) (UMP/CMP kinase) (UMP/CMPK)	'de novo' pyrimidine nucleobase biosynthetic process [GO:0006207]; nucleoside diphosphate phosphorylation [GO:0006165]; nucleoside triphosphate biosynthetic process [GO:0009142]; pyrimidine nucleotide biosynthetic process [GO:0006221]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; cytidylate kinase activity [GO:0004127]; nucleoside diphosphate kinase activity [GO:0004550]; uridylate kinase activity [GO:0009041]	GO:0004127; GO:0004550; GO:0005524; GO:0005634; GO:0005737; GO:0006165; GO:0006207; GO:0006221; GO:0009041; GO:0009142	reviewed	Gallus gallus (Chicken)
TRINITY_DN299202_c0_g2	-9.641776694	4.756913932	9.439816005	0.005771377	0.03601293	P16397	TRINITY_DN299202_c0_g2_i1	6.60E-59	Bacillopeptidase F (EC 3.4.21.-) (90 kDa serine proteinase) (Esterase) (RP-I protease)		extracellular region [GO:0005576]	serine-type endopeptidase activity [GO:0004252]	GO:0004252; GO:0005576	reviewed	Bacillus subtilis (strain 168)
TRINITY_DN299209_c0_g1	4.963040081	11.40671928	46.47544584	5.90E-07	1.11E-05	Q56X46	TRINITY_DN299209_c0_g1_i1	3.50E-15	"Mechanosensitive ion channel protein 2, chloroplastic (Mechanosensitive channel of small conductance-like 2) (MscS-Like protein 2)"	chloroplast fission [GO:0010020]; ion transport [GO:0006811]; transmembrane transport [GO:0055085]	chloroplast [GO:0009507]; chloroplast membrane [GO:0031969]; integral component of membrane [GO:0016021]; plastid envelope [GO:0009526]		GO:0006811; GO:0009507; GO:0009526; GO:0010020; GO:0016021; GO:0031969; GO:0055085	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299255_c0_g1	-8.053585567	7.818392116	47.86317181	4.68E-07	9.00E-06	O80450	TRINITY_DN299255_c0_g1_i9	7.00E-07	Trihelix transcription factor GT-3b (Transcription factor GT-1-like) (Trihelix DNA-binding protein GT-3b)	"regulation of transcription, DNA-templated [GO:0006355]"	mediator complex [GO:0016592]; nucleolus [GO:0005730]; nucleus [GO:0005634]	DNA-binding transcription factor activity [GO:0003700]; sequence-specific DNA binding [GO:0043565]	GO:0003700; GO:0005634; GO:0005730; GO:0006355; GO:0016592; GO:0043565	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299255_c0_g5	-8.056555785	5.773815605	23.88450123	6.15E-05	0.000793037	M4MR97	TRINITY_DN299255_c0_g5_i1	2.90E-79	Ribonuclease J (RNase J) (EC 3.1.-.-)	rRNA processing [GO:0006364]	cytoplasm [GO:0005737]	5'-3' exoribonuclease activity [GO:0004534]; endoribonuclease activity [GO:0004521]; RNA binding [GO:0003723]; zinc ion binding [GO:0008270]	GO:0003723; GO:0004521; GO:0004534; GO:0005737; GO:0006364; GO:0008270	reviewed	Sinorhizobium meliloti (strain Sm2011 / Rm2011 / 2011)
TRINITY_DN299263_c0_g1	17.69575317	4.890301179	61.00280226	4.99E-07	9.47E-06	P22612	TRINITY_DN299263_c0_g1_i1	4.90E-22	cAMP-dependent protein kinase catalytic subunit gamma (PKA C-gamma) (EC 2.7.11.11)	activation of protein kinase A activity [GO:0034199]; blood coagulation [GO:0007596]; cellular response to glucagon stimulus [GO:0071377]; high-density lipoprotein particle assembly [GO:0034380]; male gonad development [GO:0008584]; renal water homeostasis [GO:0003091]; spermatogenesis [GO:0007283]; stimulatory C-type lectin receptor signaling pathway [GO:0002223]	ciliary base [GO:0097546]; cytosol [GO:0005829]; intercellular bridge [GO:0045171]; nucleoplasm [GO:0005654]	ATP binding [GO:0005524]; cAMP-dependent protein kinase activity [GO:0004691]	GO:0002223; GO:0003091; GO:0004691; GO:0005524; GO:0005654; GO:0005829; GO:0007283; GO:0007596; GO:0008584; GO:0034199; GO:0034380; GO:0045171; GO:0071377; GO:0097546	reviewed	Homo sapiens (Human)
TRINITY_DN299263_c0_g2	11.51402172	2.373265957	22.85468915	0.000172966	0.001990073	P22612	TRINITY_DN299263_c0_g2_i1	2.60E-22	cAMP-dependent protein kinase catalytic subunit gamma (PKA C-gamma) (EC 2.7.11.11)	activation of protein kinase A activity [GO:0034199]; blood coagulation [GO:0007596]; cellular response to glucagon stimulus [GO:0071377]; high-density lipoprotein particle assembly [GO:0034380]; male gonad development [GO:0008584]; renal water homeostasis [GO:0003091]; spermatogenesis [GO:0007283]; stimulatory C-type lectin receptor signaling pathway [GO:0002223]	ciliary base [GO:0097546]; cytosol [GO:0005829]; intercellular bridge [GO:0045171]; nucleoplasm [GO:0005654]	ATP binding [GO:0005524]; cAMP-dependent protein kinase activity [GO:0004691]	GO:0002223; GO:0003091; GO:0004691; GO:0005524; GO:0005654; GO:0005829; GO:0007283; GO:0007596; GO:0008584; GO:0034199; GO:0034380; GO:0045171; GO:0071377; GO:0097546	reviewed	Homo sapiens (Human)
TRINITY_DN299263_c0_g3	17.01411509	4.5642273	51.75972944	1.48E-06	2.66E-05	P34099	TRINITY_DN299263_c0_g3_i1	1.00E-17	cAMP-dependent protein kinase catalytic subunit (EC 2.7.11.11) (Dd GPK2) (DdPK3)	"activation of GTPase activity [GO:0090630]; c-di-GMP signaling [GO:0061939]; chemotaxis to cAMP [GO:0043327]; culmination involved in sorocarp development [GO:0031154]; negative regulation of gene expression [GO:0010629]; negative regulation of GTPase activity [GO:0034260]; negative regulation of protein kinase activity [GO:0006469]; positive regulation of chemorepellent activity [GO:1903669]; positive regulation of gene expression [GO:0010628]; protein kinase A signaling [GO:0010737]; protein phosphorylation [GO:0006468]; regulation of macropinocytosis [GO:1905301]; regulation of MAP kinase activity [GO:0043405]; regulation of sorocarp spore cell differentiation [GO:1901261]; regulation of sorocarp stalk cell differentiation [GO:0031285]; regulation of sporulation resulting in formation of a cellular spore [GO:0042173]; regulation of transcription, DNA-templated [GO:0006355]; response to curcumin [GO:1904643]; signal transduction [GO:0007165]; sorocarp morphogenesis [GO:0031288]; sorocarp spore cell differentiation [GO:0044671]; sporulation resulting in formation of a cellular spore [GO:0030435]"	cAMP-dependent protein kinase complex [GO:0005952]; centrosome [GO:0005813]; cytosol [GO:0005829]	ATP binding [GO:0005524]; cAMP-dependent protein kinase activity [GO:0004691]; protein kinase A regulatory subunit binding [GO:0034237]	GO:0004691; GO:0005524; GO:0005813; GO:0005829; GO:0005952; GO:0006355; GO:0006468; GO:0006469; GO:0007165; GO:0010628; GO:0010629; GO:0010737; GO:0030435; GO:0031154; GO:0031285; GO:0031288; GO:0034237; GO:0034260; GO:0042173; GO:0043327; GO:0043405; GO:0044671; GO:0061939; GO:0090630; GO:1901261; GO:1903669; GO:1904643; GO:1905301	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN299270_c6_g1	3.241385889	9.772377653	17.26095323	0.000382048	0.003839084	Q94F39	TRINITY_DN299270_c6_g1_i1	3.80E-34	Ninja-family protein AFP3 (ABI five-binding protein 3) (ABI5-binding protein 3)	"negative regulation of transcription, DNA-templated [GO:0045892]; signal transduction [GO:0007165]"	nucleus [GO:0005634]		GO:0005634; GO:0007165; GO:0045892	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299270_c7_g1	-6.260603927	6.634114192	21.19795586	0.000124469	0.001493145	P35266	TRINITY_DN299270_c7_g1_i1	7.90E-60	60S ribosomal protein L17-1	hematopoietic stem cell homeostasis [GO:0061484]; translation [GO:0006412]	large ribosomal subunit [GO:0015934]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0006412; GO:0015934; GO:0061484	reviewed	Hordeum vulgare (Barley)
TRINITY_DN299275_c0_g1	21.79936817	10.01577039	321.7510343	4.97E-15	1.18E-12	P54069	TRINITY_DN299275_c0_g1_i1	1.30E-33	Protein bem46		endoplasmic reticulum [GO:0005783]; integral component of membrane [GO:0016021]	"hydrolase activity, acting on ester bonds [GO:0016788]"	GO:0005783; GO:0016021; GO:0016788	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN299276_c0_g3	10.99382588	4.109136149	24.74078971	4.96E-05	0.000658366	Q94A79	TRINITY_DN299276_c0_g3_i1	4.50E-93	Protein DEFECTIVE IN MERISTEM SILENCING 3 (Protein INVOLVED IN DE NOVO 1)	DNA methylation [GO:0006306]; gene silencing by RNA [GO:0031047]; regulation of production of siRNA involved in chromatin silencing by small RNA [GO:0070921]; RNA-directed DNA methylation [GO:0080188]	RNA polymerase V complex [GO:0000419]	protein homodimerization activity [GO:0042803]	GO:0000419; GO:0006306; GO:0031047; GO:0042803; GO:0070921; GO:0080188	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299276_c0_g5	2.552255022	8.577767647	9.750626211	0.004778976	0.031073382	Q9LNJ5	TRINITY_DN299276_c0_g5_i1	1.10E-108	Transcription factor bHLH13 (Basic helix-loop-helix protein 13) (AtbHLH13) (bHLH 13) (Transcription factor EN 39) (bHLH transcription factor bHLH013)	"negative regulation of gene expression [GO:0010629]; regulation of transcription, DNA-templated [GO:0006355]"	cytoplasm [GO:0005737]; nucleus [GO:0005634]	DNA-binding transcription factor activity [GO:0003700]; protein dimerization activity [GO:0046983]; transcription regulatory region DNA binding [GO:0044212]	GO:0003700; GO:0005634; GO:0005737; GO:0006355; GO:0010629; GO:0044212; GO:0046983	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299291_c1_g1	-3.959789992	9.106940946	26.60363193	3.14E-05	0.000424811	Q9LZ23	TRINITY_DN299291_c1_g1_i1	1.40E-27	ACT domain-containing protein ACR12 (Protein ACT DOMAIN REPEATS 12)		chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]		GO:0009507; GO:0009535; GO:0009570	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299296_c0_g1	-6.098543238	7.335163952	27.46988482	2.56E-05	0.000353526	Q6KAE5	TRINITY_DN299296_c0_g1_i1	1.30E-143	Probable E3 ubiquitin-protein ligase XBOS32 (EC 2.3.2.27) (Ankyrin repeat domain and RING finger-containing protein XBOS32) (RING-type E3 ubiquitin transferase XBOS32) (XB3 protein homolog 2)	protein ubiquitination [GO:0016567]		metal ion binding [GO:0046872]; transferase activity [GO:0016740]	GO:0016567; GO:0016740; GO:0046872	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN299653_c1_g2	18.25496082	5.628327089	23.56658716	0.000147964	0.001734653	O02056	TRINITY_DN299653_c1_g2_i1	3.80E-115	60S ribosomal protein L4	determination of adult lifespan [GO:0008340]; translation [GO:0006412]	cytosolic large ribosomal subunit [GO:0022625]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0006412; GO:0008340; GO:0022625	reviewed	Caenorhabditis elegans
TRINITY_DN299656_c3_g3	8.889151871	2.233199789	11.27310511	0.003727726	0.025752931	P00054	TRINITY_DN299656_c3_g3_i2	5.80E-39	Cytochrome c		mitochondrial intermembrane space [GO:0005758]; respirasome [GO:0070469]	electron transfer activity [GO:0009055]; heme binding [GO:0020037]; metal ion binding [GO:0046872]	GO:0005758; GO:0009055; GO:0020037; GO:0046872; GO:0070469	reviewed	Sesamum indicum (Oriental sesame) (Sesamum orientale)
TRINITY_DN299658_c5_g1	-7.049763169	8.54776446	58.95756135	8.53E-08	1.91E-06	Q93WU6	TRINITY_DN299658_c5_g1_i2	6.30E-16	Probable WRKY transcription factor 74 (WRKY DNA-binding protein 74)		nucleus [GO:0005634]	calmodulin binding [GO:0005516]; DNA-binding transcription factor activity [GO:0003700]; sequence-specific DNA binding [GO:0043565]	GO:0003700; GO:0005516; GO:0005634; GO:0043565	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299722_c1_g1	21.89540797	6.932115524	140.623957	1.18E-09	3.29E-08	Q5JKB0	TRINITY_DN299722_c1_g1_i1	2.90E-120	DNA replication licensing factor MCM4 (EC 3.6.4.12) (Minichromosome maintenance protein 4) (OsMCM4)	DNA strand elongation involved in DNA replication [GO:0006271]; DNA unwinding involved in DNA replication [GO:0006268]; double-strand break repair via break-induced replication [GO:0000727]; mitotic DNA replication initiation [GO:1902975]; pollen development [GO:0009555]; pre-replicative complex assembly involved in nuclear cell cycle DNA replication [GO:0006267]	cytosol [GO:0005829]; MCM complex [GO:0042555]; nucleus [GO:0005634]; THO complex [GO:0000347]	ATP binding [GO:0005524]; DNA helicase activity [GO:0003678]; DNA replication origin binding [GO:0003688]; metal ion binding [GO:0046872]; single-stranded DNA binding [GO:0003697]	GO:0000347; GO:0000727; GO:0003678; GO:0003688; GO:0003697; GO:0005524; GO:0005634; GO:0005829; GO:0006267; GO:0006268; GO:0006271; GO:0009555; GO:0042555; GO:0046872; GO:1902975	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN299726_c0_g1	-2.561353128	8.499142408	10.78769594	0.003245383	0.023037753	Q0IZS0	TRINITY_DN299726_c0_g1_i1	2.90E-38	"Nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic (EC 2.4.2.19) (Quinolinate phosphoribosyltransferase [decarboxylating])"	NAD biosynthetic process [GO:0009435]; quinolinate catabolic process [GO:0034213]	chloroplast [GO:0009507]; cytoplasm [GO:0005737]	nicotinate-nucleotide diphosphorylase (carboxylating) activity [GO:0004514]	GO:0004514; GO:0005737; GO:0009435; GO:0009507; GO:0034213	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN299729_c1_g1	20.45319561	8.246685836	254.2095772	6.17E-14	5.30E-12	Q7ZY11	TRINITY_DN299729_c1_g1_i1	1.60E-27	Eukaryotic translation initiation factor 2A (eIF-2A)			translation initiation factor activity [GO:0003743]	GO:0003743	reviewed	Xenopus laevis (African clawed frog)
TRINITY_DN299750_c2_g1	-9.076593591	9.184753788	45.79930454	6.62E-07	1.23E-05	O82504	TRINITY_DN299750_c2_g1_i2	2.40E-18	RNA-dependent RNA polymerase 2 (AtRDRP2) (EC 2.7.7.48) (Protein SILENCING MOVEMENT DEFICIENT 1) (RNA-directed RNA polymerase 2)	defense response to fungus [GO:0050832]; gene silencing [GO:0016458]; long-distance posttranscriptional gene silencing [GO:0010495]; production of siRNA involved in chromatin silencing by small RNA [GO:0070919]; production of siRNA involved in RNA interference [GO:0030422]	nuclear RNA-directed RNA polymerase complex [GO:0031380]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]	RNA binding [GO:0003723]; RNA-directed 5'-3' RNA polymerase activity [GO:0003968]	GO:0003723; GO:0003968; GO:0005634; GO:0005654; GO:0005730; GO:0010495; GO:0016458; GO:0030422; GO:0031380; GO:0050832; GO:0070919	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299750_c3_g1	3.018299928	10.71562761	11.64184252	0.002384634	0.018178432	Q6AWX0	TRINITY_DN299750_c3_g1_i1	2.20E-108	D-xylose-proton symporter-like 2		integral component of plasma membrane [GO:0005887]; vacuolar membrane [GO:0005774]	carbohydrate:proton symporter activity [GO:0005351]; fructose transmembrane transporter activity [GO:0005353]; glucose transmembrane transporter activity [GO:0005355]	GO:0005351; GO:0005353; GO:0005355; GO:0005774; GO:0005887	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299750_c3_g2	-3.22805766	11.50317761	12.3887633	0.001834536	0.014359683	Q8GV43	TRINITY_DN299750_c3_g2_i8	3.70E-190	Phosphoinositide phospholipase C 6 (EC 3.1.4.11) (Phosphoinositide phospholipase PLC6) (AtPLC6) (AtPLC8) (PI-PLC6)	inositol trisphosphate biosynthetic process [GO:0032959]; lipid catabolic process [GO:0016042]; phosphatidylinositol-mediated signaling [GO:0048015]; release of sequestered calcium ion into cytosol [GO:0051209]	plasma membrane [GO:0005886]	phosphatidylinositol phospholipase C activity [GO:0004435]	GO:0004435; GO:0005886; GO:0016042; GO:0032959; GO:0048015; GO:0051209	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299750_c3_g3	-11.35481482	4.765728427	21.6910308	0.000108991	0.001328061	Q10QS9	TRINITY_DN299750_c3_g3_i1	7.60E-18	B3 domain-containing protein Os03g0184500		nucleus [GO:0005634]	DNA binding [GO:0003677]	GO:0003677; GO:0005634	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN299755_c1_g3	16.33152644	4.262387733	47.80674971	2.48E-06	4.26E-05	P34221	TRINITY_DN299755_c1_g3_i1	6.60E-21	Protein phosphatase 2C homolog 3 (PP2C-3) (EC 3.1.3.16)	cellular response to osmotic stress [GO:0071470]; inactivation of MAPK activity [GO:0000188]; negative regulation of stress-activated MAPK cascade [GO:0032873]; protein dephosphorylation [GO:0006470]; regulation of cyclin-dependent protein serine/threonine kinase activity [GO:0000079]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	magnesium-dependent protein serine/threonine phosphatase activity [GO:0004724]; MAP kinase serine/threonine phosphatase activity [GO:1990439]; metal ion binding [GO:0046872]; protein serine/threonine phosphatase activity [GO:0004722]	GO:0000079; GO:0000188; GO:0004722; GO:0004724; GO:0005634; GO:0005737; GO:0006470; GO:0032873; GO:0046872; GO:0071470; GO:1990439	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN299755_c1_g4	20.11517755	6.666633937	116.224796	8.65E-10	2.44E-08	Q94BX4	TRINITY_DN299755_c1_g4_i1	2.00E-36	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A (EC 2.4.1.198) (GlcNAc-PI synthesis protein) (Phosphatidylinositol-glycan biosynthesis class A protein)	GPI anchor biosynthetic process [GO:0006506]; pollen germination [GO:0009846]; pollen tube growth [GO:0009860]	glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex [GO:0000506]; integral component of membrane [GO:0016021]	phosphatidylinositol N-acetylglucosaminyltransferase activity [GO:0017176]	GO:0000506; GO:0006506; GO:0009846; GO:0009860; GO:0016021; GO:0017176	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299758_c1_g1	7.239492666	3.071067038	11.11643235	0.002879272	0.021268132	Q38772	TRINITY_DN299758_c1_g1_i1	2.60E-155	Cell division control protein 2 homolog A (EC 2.7.11.22) (EC 2.7.11.23)	cell cycle [GO:0007049]; cell division [GO:0051301]		ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; RNA polymerase II CTD heptapeptide repeat kinase activity [GO:0008353]	GO:0004693; GO:0005524; GO:0007049; GO:0008353; GO:0051301	reviewed	Antirrhinum majus (Garden snapdragon)
TRINITY_DN299758_c1_g2	-7.187700474	8.863605533	51.87946864	2.45E-07	4.90E-06	P93101	TRINITY_DN299758_c1_g2_i1	2.10E-28	Cell division control protein 2 homolog (EC 2.7.11.22) (EC 2.7.11.23) (p34cdc2)	cell cycle [GO:0007049]; cell division [GO:0051301]		ATP binding [GO:0005524]; cyclin-dependent protein serine/threonine kinase activity [GO:0004693]; RNA polymerase II CTD heptapeptide repeat kinase activity [GO:0008353]	GO:0004693; GO:0005524; GO:0007049; GO:0008353; GO:0051301	reviewed	Oxybasis rubra (Red goosefoot) (Chenopodium rubrum)
TRINITY_DN299782_c2_g3	7.092859832	1.816985251	9.06638572	0.006893673	0.041509569	Q8NK13	TRINITY_DN299782_c2_g3_i1	4.60E-33	E3 ubiquitin ligase complex SCF subunit scon-3 (Sulfur control protein 3) (Sulfur metabolite repression control scon-3)	negative regulation of mitotic metaphase/anaphase transition [GO:0045841]; nuclear membrane biogenesis involved in mitotic nuclear division [GO:0101026]; regulation of strand invasion [GO:0060542]; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GO:0031146]	nuclear SCF ubiquitin ligase complex [GO:0043224]; RAVE complex [GO:0043291]; single-stranded DNA-dependent ATP-dependent DNA helicase complex [GO:0017117]	ubiquitin protein ligase activity [GO:0061630]	GO:0017117; GO:0031146; GO:0043224; GO:0043291; GO:0045841; GO:0060542; GO:0061630; GO:0101026	reviewed	Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
TRINITY_DN299783_c0_g3	12.93076524	3.89212012	31.43033852	1.72E-05	0.000248274	O95372	TRINITY_DN299783_c0_g3_i1	9.70E-21	Acyl-protein thioesterase 2 (APT-2) (EC 3.1.2.-) (Lysophospholipase II) (LPL-II) (LysoPLA II)	axon guidance [GO:0007411]; fatty acid metabolic process [GO:0006631]; protein depalmitoylation [GO:0002084]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; extracellular exosome [GO:0070062]; Golgi stack [GO:0005795]	cadherin binding [GO:0045296]; carboxylic ester hydrolase activity [GO:0052689]; palmitoyl-(protein) hydrolase activity [GO:0008474]	GO:0002084; GO:0005737; GO:0005795; GO:0005829; GO:0006631; GO:0007411; GO:0008474; GO:0045296; GO:0052689; GO:0070062	reviewed	Homo sapiens (Human)
TRINITY_DN299788_c0_g1	-4.941308959	6.142224532	10.81338439	0.003215008	0.022927307	Q8H1G5	TRINITY_DN299788_c0_g1_i1	1.60E-14	Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 (Protein REI1-LIKE 1) (pre-60S factor REI1 homolog 1)	ribosomal large subunit biogenesis [GO:0042273]	"cytosolic large ribosomal subunit [GO:0022625]; preribosome, large subunit precursor [GO:0030687]"	nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270]	GO:0003676; GO:0008270; GO:0022625; GO:0030687; GO:0042273	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299789_c0_g1	22.12730744	7.030578934	157.5626094	4.92E-10	1.44E-08	Q9FG38	TRINITY_DN299789_c0_g1_i1	4.60E-20	Sorting nexin 1 (AtSNX1) (Vacuolar protein sorting-associated protein 5 homolog)	auxin homeostasis [GO:0010252]; endosome to lysosome transport [GO:0008333]; Golgi to vacuole transport [GO:0006896]; positive gravitropism [GO:0009958]; protein targeting to vacuole [GO:0006623]; root development [GO:0048364]	cytosol [GO:0005829]; endosome [GO:0005768]; Golgi apparatus [GO:0005794]; intracellular membrane-bounded organelle [GO:0043231]; late endosome membrane [GO:0031902]; membrane [GO:0016020]; multivesicular body [GO:0005771]; retromer complex [GO:0030904]	phosphatidylinositol binding [GO:0035091]	GO:0005768; GO:0005771; GO:0005794; GO:0005829; GO:0006623; GO:0006896; GO:0008333; GO:0009958; GO:0010252; GO:0016020; GO:0030904; GO:0031902; GO:0035091; GO:0043231; GO:0048364	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN299795_c0_g1	-3.491647759	12.17698396	14.9918819	0.000771261	0.007062291	O80910	TRINITY_DN299795_c0_g1_i2	1.20E-90	TOM1-like protein 6	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [GO:0043328]	cytoplasm [GO:0005737]; early endosome [GO:0005769]; early endosome membrane [GO:0031901]; multivesicular body [GO:0005771]; plasma membrane [GO:0005886]	ubiquitin binding [GO:0043130]	GO:0005737; GO:0005769; GO:0005771; GO:0005886; GO:0031901; GO:0043130; GO:0043328	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN310027_c1_g1	24.83188877	9.734630799	366.8899108	2.38E-14	2.63E-12	P31584	TRINITY_DN310027_c1_g1_i2	2.10E-75	GTP-binding protein yptV1	protein transport [GO:0015031]	plasma membrane [GO:0005886]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]	GO:0003924; GO:0005525; GO:0005886; GO:0015031	reviewed	Volvox carteri (Green alga)
TRINITY_DN310080_c0_g1	-2.630350964	8.32226961	9.299395274	0.005682048	0.035599068	Q949Z1	TRINITY_DN310080_c0_g1_i1	2.60E-42	Polygalacturonase At1g48100 (PG) (EC 3.2.1.15) (Pectinase At1g48100)	carbohydrate metabolic process [GO:0005975]; plant-type cell wall modification involved in multidimensional cell growth [GO:0009831]	cell wall [GO:0005618]; extracellular region [GO:0005576]	polygalacturonase activity [GO:0004650]	GO:0004650; GO:0005576; GO:0005618; GO:0005975; GO:0009831	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN310080_c0_g3	7.072450203	1.436891031	10.69502357	0.004500992	0.029702711	Q949Z1	TRINITY_DN310080_c0_g3_i1	1.60E-09	Polygalacturonase At1g48100 (PG) (EC 3.2.1.15) (Pectinase At1g48100)	carbohydrate metabolic process [GO:0005975]; plant-type cell wall modification involved in multidimensional cell growth [GO:0009831]	cell wall [GO:0005618]; extracellular region [GO:0005576]	polygalacturonase activity [GO:0004650]	GO:0004650; GO:0005576; GO:0005618; GO:0005975; GO:0009831	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN310082_c1_g1	3.399930468	13.60384987	10.13091776	0.004139654	0.027732099	Q9LMR3	TRINITY_DN310082_c1_g1_i3	2.40E-13	"Arogenate dehydrogenase 2, chloroplastic (EC 1.3.1.78) (TyrAAT2)"	tyrosine biosynthetic process [GO:0006571]	chloroplast [GO:0009507]	arogenate dehydrogenase (NADP+) activity [GO:0033730]; prephenate dehydrogenase (NAD+) activity [GO:0008977]; prephenate dehydrogenase (NADP+) activity [GO:0004665]	GO:0004665; GO:0006571; GO:0008977; GO:0009507; GO:0033730	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN310084_c1_g1	19.6760248	5.834338078	89.02288904	3.55E-08	8.64E-07	Q29C43	TRINITY_DN310084_c1_g1_i2	1.60E-40	Neutral ceramidase (N-CDase) (NCDase) (EC 3.5.1.23) (Acylsphingosine deacylase) (N-acylsphingosine amidohydrolase)	ceramide catabolic process [GO:0046514]	extracellular region [GO:0005576]	ceramidase activity [GO:0102121]; N-acylsphingosine amidohydrolase activity [GO:0017040]	GO:0005576; GO:0017040; GO:0046514; GO:0102121	reviewed	Drosophila pseudoobscura pseudoobscura (Fruit fly)
TRINITY_DN310084_c1_g2	18.54204787	6.863129965	111.3466768	2.70E-10	8.21E-09	Q55G11	TRINITY_DN310084_c1_g2_i1	7.70E-32	Neutral ceramidase B (N-CDase B) (NCDase B) (EC 3.5.1.23) (Acylsphingosine deacylase 2B) (N-acylsphingosine amidohydrolase 2B)	ceramide catabolic process [GO:0046514]; ceramide metabolic process [GO:0006672]; long-chain fatty acid biosynthetic process [GO:0042759]; sphingosine biosynthetic process [GO:0046512]	extracellular region [GO:0005576]	ceramidase activity [GO:0102121]; N-acylsphingosine amidohydrolase activity [GO:0017040]	GO:0005576; GO:0006672; GO:0017040; GO:0042759; GO:0046512; GO:0046514; GO:0102121	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN310085_c0_g1	20.32829458	9.249679284	289.0212955	1.57E-14	2.08E-12	B8ATT7	TRINITY_DN310085_c0_g1_i1	7.30E-19	Villin-4	actin filament capping [GO:0051693]; actin filament organization [GO:0007015]; actin filament severing [GO:0051014]	actin filament bundle [GO:0032432]; cytoplasm [GO:0005737]	actin filament binding [GO:0051015]	GO:0005737; GO:0007015; GO:0032432; GO:0051014; GO:0051015; GO:0051693	reviewed	Oryza sativa subsp. indica (Rice)
TRINITY_DN310729_c0_g1	9.198714258	3.549978277	9.142405405	0.006700592	0.040663395	Q9LD90	TRINITY_DN310729_c0_g1_i1	6.60E-138	H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (CBF5 homolog) (Dyskerin) (Nopp-140-associated protein of 57 kDa homolog) (AtNAP57) (Nucleolar protein NAP57 homolog)	box H/ACA snoRNA 3'-end processing [GO:0000495]; mRNA pseudouridine synthesis [GO:1990481]; rRNA pseudouridine synthesis [GO:0031118]; snRNA pseudouridine synthesis [GO:0031120]	box H/ACA snoRNP complex [GO:0031429]; cytosol [GO:0005829]; nucleolus [GO:0005730]; plasmodesma [GO:0009506]	pseudouridine synthase activity [GO:0009982]; RNA binding [GO:0003723]	GO:0000495; GO:0003723; GO:0005730; GO:0005829; GO:0009506; GO:0009982; GO:0031118; GO:0031120; GO:0031429; GO:1990481	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN310742_c0_g4	-5.803378215	4.984286485	8.84238553	0.00679175	0.041135942	Q8W4I6	TRINITY_DN310742_c0_g4_i1	8.90E-120	"GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic (Protein BRZ-INSENSITIVE-PALE GREEN 2)"	"brassinosteroid mediated signaling pathway [GO:0009742]; chloroplast organization [GO:0009658]; chloroplast rRNA processing [GO:1901259]; developmental process [GO:0032502]; positive regulation of carotenoid biosynthetic process [GO:1904143]; positive regulation of chlorophyll biosynthetic process [GO:1902326]; regulation of transcription, DNA-templated [GO:0006355]; response to absence of light [GO:0009646]; response to brassinosteroid [GO:0009741]; response to light stimulus [GO:0009416]; response to salt stress [GO:0009651]"	chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]	GTP binding [GO:0005525]; hydrolase activity [GO:0016787]; rRNA binding [GO:0019843]	GO:0005525; GO:0006355; GO:0009416; GO:0009507; GO:0009570; GO:0009646; GO:0009651; GO:0009658; GO:0009741; GO:0009742; GO:0016787; GO:0019843; GO:0032502; GO:1901259; GO:1902326; GO:1904143	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN310742_c1_g1	8.033778215	11.73431327	88.69297611	2.31E-09	6.28E-08	P36591	TRINITY_DN310742_c1_g1_i4	7.50E-11	Dihydrofolate reductase (EC 1.5.1.3)	dihydrofolate metabolic process [GO:0046452]; folic acid metabolic process [GO:0046655]; one-carbon metabolic process [GO:0006730]; tetrahydrofolate biosynthetic process [GO:0046654]	cytosol [GO:0005829]; mitochondrion [GO:0005739]	ATP binding [GO:0005524]; dihydrofolate reductase activity [GO:0004146]; NADP binding [GO:0050661]	GO:0004146; GO:0005524; GO:0005739; GO:0005829; GO:0006730; GO:0046452; GO:0046654; GO:0046655; GO:0050661	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN310742_c1_g3	-9.484569484	4.921464851	18.02453623	0.000304583	0.003206409	Q5Z9J0	TRINITY_DN310742_c1_g3_i4	1.50E-161	Mitogen-activated protein kinase 12 (MAP kinase 12) (EC 2.7.11.24) (Blast- and wound-induced MAP kinase 1) (MAP kinase 1) (OsBWMK1) (OsMAPK1)	defense response [GO:0006952]; intracellular signal transduction [GO:0035556]; regulation of gene expression [GO:0010468]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; MAP kinase activity [GO:0004707]	GO:0004707; GO:0005524; GO:0005634; GO:0005737; GO:0006952; GO:0010468; GO:0035556	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN310743_c0_g1	8.267046619	2.107921639	13.24877257	0.00162668	0.013028113	Q7ZV82	TRINITY_DN310743_c0_g1_i1	1.50E-34	60S ribosomal protein L27	erythrocyte differentiation [GO:0030218]; translation [GO:0006412]	cytoplasmic side of rough endoplasmic reticulum membrane [GO:0098556]; cytosolic large ribosomal subunit [GO:0022625]; large ribosomal subunit [GO:0015934]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0006412; GO:0015934; GO:0022625; GO:0030218; GO:0098556	reviewed	Danio rerio (Zebrafish) (Brachydanio rerio)
TRINITY_DN310743_c5_g1	10.09989919	4.736456863	13.22878115	0.001376331	0.011299053	O74538	TRINITY_DN310743_c5_g1_i6	2.50E-23	60S ribosomal protein L27-B	cytoplasmic translation [GO:0002181]	cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]	structural constituent of ribosome [GO:0003735]	GO:0002181; GO:0003735; GO:0005829; GO:0022625	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN310744_c0_g3	20.42168159	7.97587522	197.4931605	8.70E-13	4.53E-11	Q7JP68	TRINITY_DN310744_c0_g3_i1	1.40E-14	"cAMP-dependent protein kinase, catalytic subunit-like (EC 2.7.11.11)"		cytoplasm [GO:0005737]	ATP binding [GO:0005524]; cAMP-dependent protein kinase activity [GO:0004691]	GO:0004691; GO:0005524; GO:0005737	reviewed	Caenorhabditis elegans
TRINITY_DN310745_c1_g1	-3.241405808	13.95467768	12.50902295	0.001759747	0.013893922	Q9FIG7	TRINITY_DN310745_c1_g1_i1	3.40E-14	Dirigent protein 2 (AtDIR2)		apoplast [GO:0048046]		GO:0048046	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN310746_c0_g1	20.19922803	9.016688893	239.7301457	1.15E-13	8.65E-12	Q8X1F5	TRINITY_DN310746_c0_g1_i1	1.30E-29	Autophagy-related protein 18 (Glucose-induced selective autophagy protein 12)	autophagy [GO:0006914]; protein transport [GO:0015031]	endosome membrane [GO:0010008]; phagophore assembly site membrane [GO:0034045]; vacuolar membrane [GO:0005774]		GO:0005774; GO:0006914; GO:0010008; GO:0015031; GO:0034045	reviewed	Komagataella pastoris (Yeast) (Pichia pastoris)
TRINITY_DN310746_c0_g3	18.80349132	5.662719398	75.39870134	1.16E-07	2.42E-06	Q8X1F5	TRINITY_DN310746_c0_g3_i1	6.40E-17	Autophagy-related protein 18 (Glucose-induced selective autophagy protein 12)	autophagy [GO:0006914]; protein transport [GO:0015031]	endosome membrane [GO:0010008]; phagophore assembly site membrane [GO:0034045]; vacuolar membrane [GO:0005774]		GO:0005774; GO:0006914; GO:0010008; GO:0015031; GO:0034045	reviewed	Komagataella pastoris (Yeast) (Pichia pastoris)
TRINITY_DN310761_c3_g1	-5.92966669	7.578250222	19.41611724	0.000203893	0.002286406	Q9FH51	TRINITY_DN310761_c3_g1_i2	7.40E-17	Protein FLX-like 4 (AtFLXL4)	cell differentiation [GO:0030154]; flower development [GO:0009908]			GO:0009908; GO:0030154	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN310761_c3_g3	-5.228236843	9.466155091	32.32032602	8.63E-06	0.000135555	Q9CAT7	TRINITY_DN310761_c3_g3_i2	7.10E-08	Nascent polypeptide-associated complex subunit beta	response to salt stress [GO:0009651]	cytosol [GO:0005829]; nascent polypeptide-associated complex [GO:0005854]; polysomal ribosome [GO:0042788]		GO:0005829; GO:0005854; GO:0009651; GO:0042788	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN310761_c3_g4	-8.951788316	1.859066785	13.17666937	0.001910616	0.014857681	Q9SMW7	TRINITY_DN310761_c3_g4_i1	5.30E-14	Basic transcription factor 3 (AtBTF3) (Nascent polypeptide-associated complex subunit beta)	response to salt stress [GO:0009651]	cytosol [GO:0005829]; nascent polypeptide-associated complex [GO:0005854]; polysomal ribosome [GO:0042788]		GO:0005829; GO:0005854; GO:0009651; GO:0042788	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN310763_c4_g1	-4.63463132	5.766287838	10.31269223	0.003867754	0.026425381	Q8RXU6	TRINITY_DN310763_c4_g1_i2	1.30E-29	WD repeat-containing protein PCN (Protein POPCORN)	embryo development ending in seed dormancy [GO:0009793]; lateral root formation [GO:0010311]; leaf development [GO:0048366]; leaf vascular tissue pattern formation [GO:0010305]; meristem growth [GO:0035266]; meristem maintenance [GO:0010073]; post-embryonic plant organ development [GO:0090696]; regulation of auxin polar transport [GO:2000012]; root meristem growth [GO:0010449]	nucleus [GO:0005634]		GO:0005634; GO:0009793; GO:0010073; GO:0010305; GO:0010311; GO:0010449; GO:0035266; GO:0048366; GO:0090696; GO:2000012	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN310765_c2_g2	22.04510485	9.957316847	237.6556521	1.26E-13	9.15E-12	Q54KM6	TRINITY_DN310765_c2_g2_i1	3.80E-43	Kynurenine--oxoglutarate transaminase (EC 2.6.1.7) (Glutamine transaminase K) (EC 4.4.1.13) (Glutamine--phenylpyruvate transaminase) (EC 2.6.1.64) (Kynurenine aminotransferase)	biosynthetic process [GO:0009058]; L-kynurenine catabolic process [GO:0097053]	cytoplasm [GO:0005737]; mitochondrion [GO:0005739]	cysteine-S-conjugate beta-lyase activity [GO:0047804]; glutamine-phenylpyruvate transaminase activity [GO:0047316]; kynurenine-oxoglutarate transaminase activity [GO:0016212]; pyridoxal phosphate binding [GO:0030170]; transaminase activity [GO:0008483]	GO:0005737; GO:0005739; GO:0008483; GO:0009058; GO:0016212; GO:0030170; GO:0047316; GO:0047804; GO:0097053	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN310768_c2_g1	-3.344924106	8.725166749	15.19506622	0.000722879	0.006698532	Q9FNQ1	TRINITY_DN310768_c2_g1_i1	1.20E-29	DExH-box ATP-dependent RNA helicase DExH14 (EC 3.6.4.13) (BRR2 homolog C) (AtBRR2C) (Pre-mRNA-splicing helicase BRR2C)	DNA dealkylation involved in DNA repair [GO:0006307]; mRNA processing [GO:0006397]; RNA splicing [GO:0008380]	nucleus [GO:0005634]; spliceosomal complex [GO:0005681]	ATP binding [GO:0005524]; ATP-dependent 3'-5' DNA helicase activity [GO:0043140]; ATP-dependent helicase activity [GO:0008026]; mRNA binding [GO:0003729]	GO:0003729; GO:0005524; GO:0005634; GO:0005681; GO:0006307; GO:0006397; GO:0008026; GO:0008380; GO:0043140	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN310768_c2_g2	-2.360781724	8.77314978	8.541969388	0.007650308	0.045272853	F4JCU0	TRINITY_DN310768_c2_g2_i1	3.60E-08	SUPPRESSOR OF ABI3-5 (REQUIRED FOR SNC4-1D protein 1) (Splicing factor SUA)	"mRNA processing [GO:0006397]; mRNA splicing, via spliceosome [GO:0000398]; regulation of RNA splicing [GO:0043484]"	nucleus [GO:0005634]; spliceosomal complex [GO:0005681]	metal ion binding [GO:0046872]; RNA binding [GO:0003723]	GO:0000398; GO:0003723; GO:0005634; GO:0005681; GO:0006397; GO:0043484; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311070_c0_g2	-3.127439303	9.879493539	19.93615884	0.000176138	0.002011616	O48782	TRINITY_DN311070_c0_g2_i1	4.20E-06	"Heme oxygenase 1, chloroplastic (AtHO1) (EC 1.14.14.18) (Protein GENOMES UNCOUPLED 2) (Protein REVERSAL OF THE DET PHENOTYPE 4)"	carotenoid biosynthetic process [GO:0016117]; cellular response to UV-C [GO:0071494]; chloroplast-nucleus signaling pathway [GO:0010019]; flavonoid biosynthetic process [GO:0009813]; heme oxidation [GO:0006788]; photosynthesis [GO:0015979]; phytochromobilin biosynthetic process [GO:0010024]; regulation of meristem growth [GO:0010075]; regulation of stomatal movement [GO:0010119]	chloroplast [GO:0009507]	heme binding [GO:0020037]; heme oxygenase (decyclizing) activity [GO:0004392]; metal ion binding [GO:0046872]	GO:0004392; GO:0006788; GO:0009507; GO:0009813; GO:0010019; GO:0010024; GO:0010075; GO:0010119; GO:0015979; GO:0016117; GO:0020037; GO:0046872; GO:0071494	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311070_c0_g3	-9.955325165	8.842527996	68.51367551	2.35E-08	6.02E-07	Q9LU21	TRINITY_DN311070_c0_g3_i1	8.20E-27	"Photosynthetic NDH subunit of subcomplex B 3, chloroplastic (Protein PnsB3) (NDH-DEPENDENT CYCLIC ELECTRON FLOW 4)"	photosynthetic electron transport in photosystem I [GO:0009773]	chloroplast [GO:0009507]; chloroplast thylakoid membrane [GO:0009535]; NAD(P)H dehydrogenase complex (plastoquinone) [GO:0010598]	"2 iron, 2 sulfur cluster binding [GO:0051537]; electron transfer activity [GO:0009055]; metal ion binding [GO:0046872]"	GO:0009055; GO:0009507; GO:0009535; GO:0009773; GO:0010598; GO:0046872; GO:0051537	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311077_c1_g1	-7.230388265	9.721114976	47.93573387	4.62E-07	8.95E-06	Q9SX33	TRINITY_DN311077_c1_g1_i1	0	Putative phospholipid-transporting ATPase 9 (AtALA9) (EC 7.6.2.1) (Aminophospholipid flippase 9)	Golgi vesicle budding [GO:0048194]; phospholipid translocation [GO:0045332]	Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; trans-Golgi network [GO:0005802]	ATPase-coupled phospholipid transporter activity [GO:0004012]; ATP binding [GO:0005524]; magnesium ion binding [GO:0000287]	GO:0000139; GO:0000287; GO:0004012; GO:0005524; GO:0005802; GO:0005886; GO:0016021; GO:0045332; GO:0048194	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311412_c1_g1	-6.675011143	7.96886587	30.00877058	1.43E-05	0.000210724	A8IEF3	TRINITY_DN311412_c1_g1_i1	4.90E-116	Protein arginine N-methyltransferase 1 (EC 2.1.1.-)	"histone arginine methylation [GO:0034969]; peptidyl-arginine methylation, to asymmetrical-dimethyl arginine [GO:0019919]; regulation of transcription, DNA-templated [GO:0006355]"	cytosol [GO:0005829]; motile cilium [GO:0031514]; nucleus [GO:0005634]	histone-arginine N-methyltransferase activity [GO:0008469]; protein-arginine omega-N asymmetric methyltransferase activity [GO:0035242]	GO:0005634; GO:0005829; GO:0006355; GO:0008469; GO:0019919; GO:0031514; GO:0034969; GO:0035242	reviewed	Chlamydomonas reinhardtii (Chlamydomonas smithii)
TRINITY_DN311414_c0_g1	22.03421622	9.310703998	322.4272096	4.86E-15	1.18E-12	Q54HP3	TRINITY_DN311414_c0_g1_i1	3.80E-39	Developmentally-regulated GTP-binding protein 1 homolog (DRG-1)	cytoplasmic translation [GO:0002181]	cytoplasm [GO:0005737]	GTP binding [GO:0005525]	GO:0002181; GO:0005525; GO:0005737	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN311418_c0_g2	23.50634414	7.726260115	223.5328037	3.17E-11	1.14E-09	Q5DX34	TRINITY_DN311418_c0_g2_i2	4.80E-29	X-linked retinitis pigmentosa GTPase regulator homolog (Gut granule loss protein 4)	negative regulation of axon extension [GO:0030517]	axon [GO:0030424]; synapse [GO:0045202]	guanyl-nucleotide exchange factor activity [GO:0005085]	GO:0005085; GO:0030424; GO:0030517; GO:0045202	reviewed	Caenorhabditis elegans
TRINITY_DN311418_c0_g3	9.4369417	1.930509019	16.97884193	0.000711777	0.006615465	Q9VR91	TRINITY_DN311418_c0_g3_i1	1.10E-10	Probable E3 ubiquitin-protein ligase HERC2 (EC 2.3.2.26) (HECT domain and RCC1-like domain-containing protein 2) (HECT-type E3 ubiquitin transferase HERC2)	cellular response to DNA damage stimulus [GO:0006974]; proteasome-mediated ubiquitin-dependent protein catabolic process [GO:0043161]; protein ubiquitination [GO:0016567]	centriole [GO:0005814]; cytoplasm [GO:0005737]; nucleus [GO:0005634]	metal ion binding [GO:0046872]; ubiquitin-protein transferase activity [GO:0004842]	GO:0004842; GO:0005634; GO:0005737; GO:0005814; GO:0006974; GO:0016567; GO:0043161; GO:0046872	reviewed	Drosophila melanogaster (Fruit fly)
TRINITY_DN311419_c1_g1	5.914018302	13.00862602	52.8334811	2.12E-07	4.25E-06	Q9LZP8	TRINITY_DN311419_c1_g1_i1	8.30E-14	bZIP transcription factor 53 (AtbZIP53)	"cellular response to starvation [GO:0009267]; hypotonic response [GO:0006971]; positive regulation of seed maturation [GO:2000693]; positive regulation of transcription, DNA-templated [GO:0045893]"	nucleus [GO:0005634]	DNA-binding transcription factor activity [GO:0003700]; nutrient reservoir activity [GO:0045735]; protein heterodimerization activity [GO:0046982]; sequence-specific DNA binding [GO:0043565]; transcription regulatory region DNA binding [GO:0044212]	GO:0003700; GO:0005634; GO:0006971; GO:0009267; GO:0043565; GO:0044212; GO:0045735; GO:0045893; GO:0046982; GO:2000693	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311419_c1_g2	4.253990867	6.286731146	13.12643773	0.001424784	0.011635105	Q9SJG6	TRINITY_DN311419_c1_g2_i1	5.30E-82	"Pentatricopeptide repeat-containing protein At2g42920, chloroplastic"	RNA modification [GO:0009451]	chloroplast [GO:0009507]		GO:0009451; GO:0009507	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311463_c2_g1	14.73850816	4.407258396	18.81893573	0.000318153	0.003321885	A0SXL6	TRINITY_DN311463_c2_g1_i1	2.30E-57	Elongation factor 2 (EF-2)	hematopoietic progenitor cell differentiation [GO:0002244]; positive regulation of translation [GO:0045727]	aggresome [GO:0016235]; cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; polysome [GO:0005844]; synapse [GO:0045202]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; protein kinase binding [GO:0019901]; translation elongation factor activity [GO:0003746]	GO:0002244; GO:0003746; GO:0003924; GO:0005525; GO:0005634; GO:0005737; GO:0005829; GO:0005844; GO:0005886; GO:0016235; GO:0019901; GO:0045202; GO:0045727	reviewed	Callithrix jacchus (White-tufted-ear marmoset)
TRINITY_DN311463_c3_g2	9.730125889	4.83808133	15.9690715	0.000566757	0.005380719	P09445	TRINITY_DN311463_c3_g2_i5	2.50E-34	Elongation factor 2 (EF-2)		cytoplasm [GO:0005737]; nucleus [GO:0005634]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; translation elongation factor activity [GO:0003746]	GO:0003746; GO:0003924; GO:0005525; GO:0005634; GO:0005737	reviewed	Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus)
TRINITY_DN311468_c0_g1	20.20518439	9.481977439	197.2995555	8.79E-13	4.53E-11	Q8NC42	TRINITY_DN311468_c0_g1_i2	1.20E-12	E3 ubiquitin-protein ligase RNF149 (EC 2.3.2.27) (DNA polymerase-transactivated protein 2) (RING finger protein 149) (RING-type E3 ubiquitin transferase RNF149)	cellular response to drug [GO:0035690]; negative regulation of MAPK cascade [GO:0043409]; regulation of protein stability [GO:0031647]; ubiquitin-dependent protein catabolic process [GO:0006511]	integral component of membrane [GO:0016021]; membrane [GO:0016020]	metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]	GO:0006511; GO:0016020; GO:0016021; GO:0031647; GO:0035690; GO:0043409; GO:0046872; GO:0061630	reviewed	Homo sapiens (Human)
TRINITY_DN311475_c2_g1	-1.916168207	9.839074954	8.501004242	0.00777637	0.045756399	O64827	TRINITY_DN311475_c2_g1_i1	5.00E-24	Histone-lysine N-methyltransferase SUVR5 (EC 2.1.1.43) (C2H2 zinc finger-SET histone methyltransferase) (Protein C2H2 SET) (Protein SET DOMAIN GROUP 6) (Suppressor of variegation 3-9-related protein 5) (Su(var)3-9-related protein 5)	chromatin remodeling [GO:0006338]; chromatin silencing [GO:0006342]; histone lysine methylation [GO:0034968]; regulation of histone H3-K9 dimethylation [GO:1900109]	chromosome [GO:0005694]; nucleus [GO:0005634]	DNA-binding transcription factor activity [GO:0003700]; histone-lysine N-methyltransferase activity [GO:0018024]; sequence-specific DNA binding [GO:0043565]; zinc ion binding [GO:0008270]	GO:0003700; GO:0005634; GO:0005694; GO:0006338; GO:0006342; GO:0008270; GO:0018024; GO:0034968; GO:0043565; GO:1900109	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311476_c1_g3	10.16836665	4.660858921	15.01267429	0.000766151	0.007036317	O22347	TRINITY_DN311476_c1_g3_i3	1.70E-33	Tubulin alpha-1 chain (Alpha-1-tubulin)	microtubule-based process [GO:0007017]	cytoplasm [GO:0005737]; microtubule [GO:0005874]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; structural constituent of cytoskeleton [GO:0005200]	GO:0003924; GO:0005200; GO:0005525; GO:0005737; GO:0005874; GO:0007017	reviewed	Eleusine indica (Goosegrass) (Cynosurus indicus)
TRINITY_DN311478_c1_g1	4.833965334	15.90629702	29.81174241	1.49E-05	0.000219183	Q9SND9	TRINITY_DN311478_c1_g1_i1	3.70E-34	Uncharacterized acetyltransferase At3g50280 (EC 2.3.1.-)			"transferase activity, transferring acyl groups other than amino-acyl groups [GO:0016747]"	GO:0016747	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311478_c1_g2	3.963356803	17.1591643	16.23669396	0.00052168	0.005014283	P51106	TRINITY_DN311478_c1_g2_i2	1.00E-77	Dihydroflavonol 4-reductase (DFR) (EC 1.1.1.219) (Dihydrokaempferol 4-reductase) (Flavanone 4-reductase) (FNR) (EC 1.1.1.234)	anthocyanin-containing compound biosynthetic process [GO:0009718]		coenzyme binding [GO:0050662]; dihydrokaempferol 4-reductase activity [GO:0045552]; flavanone 4-reductase activity [GO:0047890]	GO:0009718; GO:0045552; GO:0047890; GO:0050662	reviewed	Hordeum vulgare (Barley)
TRINITY_DN311484_c1_g1	19.16590781	5.700791459	83.27965137	5.72E-08	1.33E-06	O15066	TRINITY_DN311484_c1_g1_i1	1.20E-137	"Kinesin-like protein KIF3B (HH0048) (Microtubule plus end-directed kinesin motor 3B) [Cleaved into: Kinesin-like protein KIF3B, N-terminally processed]"	"anterograde axonal transport [GO:0008089]; antigen processing and presentation of exogenous peptide antigen via MHC class II [GO:0019886]; determination of left/right symmetry [GO:0007368]; intraciliary transport involved in cilium assembly [GO:0035735]; microtubule-based movement [GO:0007018]; mitotic centrosome separation [GO:0007100]; mitotic spindle assembly [GO:0090307]; mitotic spindle organization [GO:0007052]; plus-end-directed vesicle transport along microtubule [GO:0072383]; positive regulation of cytokinesis [GO:0032467]; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum [GO:0006890]"	axon cytoplasm [GO:1904115]; centrosome [GO:0005813]; ciliary tip [GO:0097542]; cilium [GO:0005929]; cytosol [GO:0005829]; extracellular exosome [GO:0070062]; kinesin complex [GO:0005871]; kinesin II complex [GO:0016939]; membrane [GO:0016020]; microtubule [GO:0005874]; microtubule cytoskeleton [GO:0015630]; midbody [GO:0030496]; plus-end kinesin complex [GO:0005873]; spindle [GO:0005819]	"ATPase activity [GO:0016887]; ATP binding [GO:0005524]; ATP-dependent microtubule motor activity, plus-end-directed [GO:0008574]; intraciliary transport particle B binding [GO:0120170]; microtubule binding [GO:0008017]; microtubule motor activity [GO:0003777]; Rho GTPase binding [GO:0017048]"	GO:0003777; GO:0005524; GO:0005813; GO:0005819; GO:0005829; GO:0005871; GO:0005873; GO:0005874; GO:0005929; GO:0006890; GO:0007018; GO:0007052; GO:0007100; GO:0007368; GO:0008017; GO:0008089; GO:0008574; GO:0015630; GO:0016020; GO:0016887; GO:0016939; GO:0017048; GO:0019886; GO:0030496; GO:0032467; GO:0035735; GO:0070062; GO:0072383; GO:0090307; GO:0097542; GO:0120170; GO:1904115	reviewed	Homo sapiens (Human)
TRINITY_DN311484_c1_g3	23.16462319	8.191116838	235.4331502	1.54E-12	7.09E-11	Q14697	TRINITY_DN311484_c1_g3_i1	2.20E-21	Neutral alpha-glucosidase AB (EC 3.2.1.207) (Alpha-glucosidase 2) (Glucosidase II subunit alpha)	carbohydrate metabolic process [GO:0005975]; N-glycan processing [GO:0006491]; protein folding [GO:0006457]	endoplasmic reticulum lumen [GO:0005788]; extracellular exosome [GO:0070062]; glucosidase II complex [GO:0017177]; Golgi apparatus [GO:0005794]; intracellular membrane-bounded organelle [GO:0043231]; melanosome [GO:0042470]; membrane [GO:0016020]	"alpha-glucosidase activity [GO:0090599]; carbohydrate binding [GO:0030246]; glucan 1,3-alpha-glucosidase activity [GO:0033919]; RNA binding [GO:0003723]"	GO:0003723; GO:0005788; GO:0005794; GO:0005975; GO:0006457; GO:0006491; GO:0016020; GO:0017177; GO:0030246; GO:0033919; GO:0042470; GO:0043231; GO:0070062; GO:0090599	reviewed	Homo sapiens (Human)
TRINITY_DN311484_c1_g5	15.29676031	3.850968225	42.18897986	5.44E-06	9.01E-05	Q52828	TRINITY_DN311484_c1_g5_i2	6.50E-23	Protein GstA			transferase activity [GO:0016740]	GO:0016740	reviewed	Rhizobium leguminosarum
TRINITY_DN311486_c4_g1	-5.071817385	5.926172284	11.09399773	0.002902761	0.021339776	Q8LPS1	TRINITY_DN311486_c4_g1_i2	3.50E-11	"Long chain acyl-CoA synthetase 6, peroxisomal (EC 6.2.1.3)"	fatty acid metabolic process [GO:0006631]; multicellular organism development [GO:0007275]; response to ozone [GO:0010193]	glyoxysomal membrane [GO:0046861]; membrane [GO:0016020]; peroxisome [GO:0005777]	acyl-CoA ligase activity [GO:0003996]; ATP binding [GO:0005524]; decanoate-CoA ligase activity [GO:0102391]; long-chain fatty acid-CoA ligase activity [GO:0004467]	GO:0003996; GO:0004467; GO:0005524; GO:0005777; GO:0006631; GO:0007275; GO:0010193; GO:0016020; GO:0046861; GO:0102391	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311493_c0_g1	13.95418876	5.418432709	19.02664012	0.000227799	0.00246342	P13607	TRINITY_DN311493_c0_g1_i2	0	Sodium/potassium-transporting ATPase subunit alpha (Na(+)/K(+) ATPase alpha subunit) (EC 7.2.2.13) (Sodium pump subunit alpha)	"adult locomotory behavior [GO:0008344]; ATP hydrolysis coupled proton transport [GO:0015991]; cation transport [GO:0006812]; cellular potassium ion homeostasis [GO:0030007]; cellular sodium ion homeostasis [GO:0006883]; chemical synaptic transmission [GO:0007268]; determination of adult lifespan [GO:0008340]; jump response [GO:0007630]; locomotory behavior [GO:0007626]; neuromuscular process [GO:0050905]; potassium ion import across plasma membrane [GO:1990573]; regulation of tube diameter, open tracheal system [GO:0035158]; regulation of tube length, open tracheal system [GO:0035159]; response to mechanical stimulus [GO:0009612]; response to temperature stimulus [GO:0009266]; sensory perception of sound [GO:0007605]; septate junction assembly [GO:0019991]; sodium ion export across plasma membrane [GO:0036376]; synaptic growth at neuromuscular junction [GO:0051124]; tissue homeostasis [GO:0001894]; trachea morphogenesis [GO:0060439]"	basolateral plasma membrane [GO:0016323]; cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; septate junction [GO:0005918]; sodium:potassium-exchanging ATPase complex [GO:0005890]	ATP binding [GO:0005524]; sodium:potassium-exchanging ATPase activity [GO:0005391]	GO:0001894; GO:0005391; GO:0005524; GO:0005634; GO:0005737; GO:0005886; GO:0005890; GO:0005918; GO:0006812; GO:0006883; GO:0007268; GO:0007605; GO:0007626; GO:0007630; GO:0008340; GO:0008344; GO:0009266; GO:0009612; GO:0015991; GO:0016323; GO:0019991; GO:0030007; GO:0035158; GO:0035159; GO:0036376; GO:0050905; GO:0051124; GO:0060439; GO:1990573	reviewed	Drosophila melanogaster (Fruit fly)
TRINITY_DN311730_c0_g1	6.131411014	6.243943317	14.65333203	0.000859924	0.007692098	O35604	TRINITY_DN311730_c0_g1_i1	3.50E-28	NPC intracellular cholesterol transporter 1 (Niemann-Pick C1 protein)	adult walking behavior [GO:0007628]; autophagy [GO:0006914]; bile acid metabolic process [GO:0008206]; cellular response to low-density lipoprotein particle stimulus [GO:0071404]; cellular response to steroid hormone stimulus [GO:0071383]; cholesterol efflux [GO:0033344]; cholesterol homeostasis [GO:0042632]; cholesterol metabolic process [GO:0008203]; cholesterol transport [GO:0030301]; endocytosis [GO:0006897]; establishment of protein localization to membrane [GO:0090150]; intracellular cholesterol transport [GO:0032367]; lysosomal transport [GO:0007041]; membrane raft organization [GO:0031579]; negative regulation of cell death [GO:0060548]; negative regulation of macroautophagy [GO:0016242]; protein glycosylation [GO:0006486]; response to cadmium ion [GO:0046686]; response to drug [GO:0042493]; viral entry into host cell [GO:0046718]	endoplasmic reticulum [GO:0005783]; endosome [GO:0005768]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; integral component of lysosomal membrane [GO:1905103]; integral component of plasma membrane [GO:0005887]; late endosome membrane [GO:0031902]; lysosome [GO:0005764]; membrane [GO:0016020]; membrane raft [GO:0045121]; nuclear envelope [GO:0005635]; perinuclear region of cytoplasm [GO:0048471]; plasma membrane [GO:0005886]; vesicle [GO:0031982]	cholesterol binding [GO:0015485]; lipid transporter activity [GO:0005319]	GO:0005319; GO:0005576; GO:0005635; GO:0005764; GO:0005768; GO:0005783; GO:0005794; GO:0005886; GO:0005887; GO:0006486; GO:0006897; GO:0006914; GO:0007041; GO:0007628; GO:0008203; GO:0008206; GO:0015485; GO:0016020; GO:0016242; GO:0030301; GO:0031579; GO:0031902; GO:0031982; GO:0032367; GO:0033344; GO:0042493; GO:0042632; GO:0045121; GO:0046686; GO:0046718; GO:0048471; GO:0060548; GO:0071383; GO:0071404; GO:0090150; GO:1905103	reviewed	Mus musculus (Mouse)
TRINITY_DN311738_c1_g1	10.85866831	5.172306452	17.44124977	0.00036199	0.003697558	O76856	TRINITY_DN311738_c1_g1_i4	4.70E-57	Cathepsin D (EC 3.4.23.5) (Ddp44)	programmed cell death [GO:0012501]; protein catabolic process [GO:0030163]; proteolysis [GO:0006508]	early endosome [GO:0005769]; early phagosome [GO:0032009]; extracellular region [GO:0005576]; lysosome [GO:0005764]; phagocytic vesicle [GO:0045335]	aspartic-type endopeptidase activity [GO:0004190]	GO:0004190; GO:0005576; GO:0005764; GO:0005769; GO:0006508; GO:0012501; GO:0030163; GO:0032009; GO:0045335	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN311742_c0_g1	18.16354156	7.363080664	124.9046439	8.87E-11	3.02E-09	Q9FN03	TRINITY_DN311742_c0_g1_i1	7.00E-39	Ultraviolet-B receptor UVR8 (Protein UV-B RESISTANCE 8) (RCC1 domain-containing protein UVR8)	entrainment of circadian clock [GO:0009649]; protein-chromophore linkage [GO:0018298]; response to UV [GO:0009411]; response to UV-B [GO:0010224]	chromatin [GO:0000785]; cytosol [GO:0005829]; nucleus [GO:0005634]	chromatin binding [GO:0003682]; guanyl-nucleotide exchange factor activity [GO:0005085]; identical protein binding [GO:0042802]; photoreceptor activity [GO:0009881]; protein homodimerization activity [GO:0042803]	GO:0000785; GO:0003682; GO:0005085; GO:0005634; GO:0005829; GO:0009411; GO:0009649; GO:0009881; GO:0010224; GO:0018298; GO:0042802; GO:0042803	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311743_c1_g1	-4.32799042	8.04581312	19.16536566	0.00021895	0.002405162	Q9LKA5	TRINITY_DN311743_c1_g1_i2	2.30E-20	"Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial (RNA editing-interacting protein 1)"	cytidine to uridine editing [GO:0016554]; mitochondrial mRNA modification [GO:0080156]; mRNA processing [GO:0006397]; RNA modification [GO:0009451]	chloroplast [GO:0009507]; mitochondrion [GO:0005739]	cobalt ion binding [GO:0050897]; protein dimerization activity [GO:0046983]; protein homodimerization activity [GO:0042803]	GO:0005739; GO:0006397; GO:0009451; GO:0009507; GO:0016554; GO:0042803; GO:0046983; GO:0050897; GO:0080156	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311745_c0_g3	-3.564980822	9.312744848	18.75614937	0.000246194	0.00260058	Q67VP4	TRINITY_DN311745_c0_g3_i1	9.40E-94	Rac-like GTP-binding protein 4 (GTPase protein ROP4) (OsRac4)	actin cytoskeleton organization [GO:0030036]; actin filament organization [GO:0007015]; cell migration [GO:0016477]; cell morphogenesis [GO:0000902]; positive regulation of actin filament polymerization [GO:0030838]; Rho protein signal transduction [GO:0007266]	cytoplasm [GO:0005737]; nucleus [GO:0005634]; plasma membrane [GO:0005886]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; protein kinase binding [GO:0019901]	GO:0000902; GO:0003924; GO:0005525; GO:0005634; GO:0005737; GO:0005886; GO:0007015; GO:0007266; GO:0016477; GO:0019901; GO:0030036; GO:0030838	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN311752_c0_g1	-2.398505933	10.8408513	10.18365403	0.004058671	0.02736729	Q0DV32	TRINITY_DN311752_c0_g1_i1	1.10E-123	4-coumarate--CoA ligase-like 1 (EC 6.2.1.-)	jasmonic acid biosynthetic process [GO:0009695]	peroxisome [GO:0005777]	ATP binding [GO:0005524]; fatty-acyl-CoA synthase activity [GO:0004321]; ligase activity [GO:0016874]	GO:0004321; GO:0005524; GO:0005777; GO:0009695; GO:0016874	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN311753_c2_g3	19.9248532	7.540270783	166.0162554	5.17E-12	2.08E-10	Q1PFN9	TRINITY_DN311753_c2_g3_i1	3.20E-06	Pumilio homolog 9 (APUM-9) (AtPUM9)	negative regulation of seed dormancy process [GO:1902039]; regulation of translation [GO:0006417]	cytoplasm [GO:0005737]	RNA binding [GO:0003723]	GO:0003723; GO:0005737; GO:0006417; GO:1902039	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311753_c2_g8	20.79441843	8.61104561	231.4759639	1.66E-13	1.14E-11	P48758	TRINITY_DN311753_c2_g8_i1	1.30E-18	Carbonyl reductase [NADPH] 1 (EC 1.1.1.184) (15-hydroxyprostaglandin dehydrogenase [NADP(+)]) (EC 1.1.1.197) (NADPH-dependent carbonyl reductase 1) (Prostaglandin 9-ketoreductase) (Prostaglandin-E(2) 9-reductase) (EC 1.1.1.189)	drug metabolic process [GO:0017144]; oxidation-reduction process [GO:0055114]; vitamin K metabolic process [GO:0042373]	cytoplasm [GO:0005737]; intracellular membrane-bounded organelle [GO:0043231]; microvillus [GO:0005902]; nucleus [GO:0005634]; plasma membrane [GO:0005886]	"15-hydroxyprostaglandin dehydrogenase (NADP+) activity [GO:0047021]; carbonyl reductase (NADPH) activity [GO:0004090]; oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [GO:0016655]; prostaglandin-E2 9-reductase activity [GO:0050221]"	GO:0004090; GO:0005634; GO:0005737; GO:0005886; GO:0005902; GO:0016655; GO:0017144; GO:0042373; GO:0043231; GO:0047021; GO:0050221; GO:0055114	reviewed	Mus musculus (Mouse)
TRINITY_DN311774_c0_g1	23.03140208	8.169504503	247.2877869	9.77E-13	4.96E-11	O81117	TRINITY_DN311774_c0_g1_i2	7.30E-34	Cytochrome P450 94A1 (EC 1.14.-.-) (P450-dependent fatty acid omega-hydroxylase)		endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]	"heme binding [GO:0020037]; iron ion binding [GO:0005506]; monooxygenase activity [GO:0004497]; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [GO:0016705]"	GO:0004497; GO:0005506; GO:0005789; GO:0016021; GO:0016705; GO:0020037	reviewed	Vicia sativa (Spring vetch) (Tare)
TRINITY_DN311783_c0_g2	21.66303844	9.696917393	384.3781695	7.23E-16	6.09E-13	Q43531	TRINITY_DN311783_c0_g2_i2	2.90E-49	Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase (LlCCaMK) (EC 2.7.11.17)		integral component of membrane [GO:0016021]	ATP binding [GO:0005524]; calcium ion binding [GO:0005509]; calmodulin binding [GO:0005516]; calmodulin-dependent protein kinase activity [GO:0004683]	GO:0004683; GO:0005509; GO:0005516; GO:0005524; GO:0016021	reviewed	Lilium longiflorum (Trumpet lily)
TRINITY_DN311784_c3_g3	-3.117392811	9.041847144	13.28972907	0.001348334	0.011134527	Q9LJU6	TRINITY_DN311784_c3_g3_i1	1.90E-28	Protein FATTY ACID EXPORT 6 (At-FAX6)		cytoplasm [GO:0005737]; endomembrane system [GO:0012505]; integral component of membrane [GO:0016021]; nucleus [GO:0005634]		GO:0005634; GO:0005737; GO:0012505; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311788_c0_g1	-11.31636469	5.729733757	31.22665792	1.09E-05	0.00016659	B6IPI0	TRINITY_DN311788_c0_g1_i9	7.00E-42	tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I)	tRNA pseudouridine synthesis [GO:0031119]		RNA binding [GO:0003723]; tRNA pseudouridine synthase activity [GO:0106029]	GO:0003723; GO:0031119; GO:0106029	reviewed	Rhodospirillum centenum (strain ATCC 51521 / SW)
TRINITY_DN311789_c4_g1	11.80681734	3.187491121	15.36752979	0.000845802	0.007609762	P04106	TRINITY_DN311789_c4_g1_i1	2.80E-20	Tubulin alpha chain	microtubule-based process [GO:0007017]	cytoplasm [GO:0005737]; microtubule [GO:0005874]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; structural constituent of cytoskeleton [GO:0005200]	GO:0003924; GO:0005200; GO:0005525; GO:0005737; GO:0005874; GO:0007017	reviewed	Trypanosoma brucei rhodesiense
TRINITY_DN311790_c1_g3	6.653798994	1.627463752	8.615270035	0.008175073	0.047649437	Q05022	TRINITY_DN311790_c1_g3_i1	4.10E-22	rRNA biogenesis protein RRP5 (Ribosomal RNA-processing protein 5) (U3 small nucleolar RNA-associated protein RRP5) (U3 snoRNA-associated protein RRP5)	"90S preribosome assembly [GO:0034463]; endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000480]; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000447]; endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000464]; endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000472]; maturation of SSU-rRNA [GO:0030490]; rRNA methylation [GO:0031167]; rRNA processing [GO:0006364]"	90S preribosome [GO:0030686]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; small-subunit processome [GO:0032040]	box C/D snoRNA binding [GO:0034512]; box H/ACA snoRNA binding [GO:0034513]; mRNA binding [GO:0003729]; poly(U) RNA binding [GO:0008266]; rRNA primary transcript binding [GO:0042134]; snoRNA binding [GO:0030515]; U3 snoRNA binding [GO:0034511]	GO:0000447; GO:0000464; GO:0000472; GO:0000480; GO:0003729; GO:0005654; GO:0005730; GO:0006364; GO:0008266; GO:0030490; GO:0030515; GO:0030686; GO:0031167; GO:0032040; GO:0034463; GO:0034511; GO:0034512; GO:0034513; GO:0042134	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN311791_c1_g2	6.067140216	4.537799797	9.591827852	0.00507741	0.032265301	Q5G1T1	TRINITY_DN311791_c1_g2_i2	9.00E-14	"Pentatricopeptide repeat-containing protein At3g49170, chloroplastic (Protein EMBRYO DEFECTIVE 2261)"	embryo development ending in seed dormancy [GO:0009793]; RNA modification [GO:0009451]	chloroplast [GO:0009507]	zinc ion binding [GO:0008270]	GO:0008270; GO:0009451; GO:0009507; GO:0009793	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311791_c2_g1	-5.557278755	5.682634235	10.65095601	0.003412456	0.023787276	F4JXF9	TRINITY_DN311791_c2_g1_i1	7.40E-13	DNA-directed RNA polymerase III subunit 1 (DNA-directed RNA polymerase III subunit RPC1) (DNA polymerase I subunit C1) (EC 2.7.7.6) (Nuclear RNA polymerase C1)	transcription by RNA polymerase III [GO:0006383]	RNA polymerase III complex [GO:0005666]	DNA binding [GO:0003677]; DNA-directed 5'-3' RNA polymerase activity [GO:0003899]; metal ion binding [GO:0046872]	GO:0003677; GO:0003899; GO:0005666; GO:0006383; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311792_c1_g1	-6.558140094	7.320585417	32.60220747	8.13E-06	0.000128302	P21238	TRINITY_DN311792_c1_g1_i5	7.70E-164	"Chaperonin 60 subunit alpha 1, chloroplastic (CPN-60 alpha 1) (Protein SCHLEPPERLESS) (RuBisCO large subunit-binding protein subunit alpha 1)"	'de novo' protein folding [GO:0006458]; chloroplast organization [GO:0009658]; embryo development ending in seed dormancy [GO:0009793]; mitochondrion organization [GO:0007005]; protein folding [GO:0006457]; protein refolding [GO:0042026]	apoplast [GO:0048046]; chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; cytosol [GO:0005829]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; mitochondrion [GO:0005739]; thylakoid [GO:0009579]	ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]	GO:0005524; GO:0005739; GO:0005829; GO:0006457; GO:0006458; GO:0007005; GO:0009507; GO:0009570; GO:0009579; GO:0009658; GO:0009793; GO:0009941; GO:0016020; GO:0022626; GO:0042026; GO:0048046; GO:0051082	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311798_c0_g2	1.833486943	9.767990604	8.548120901	0.007631573	0.045248501	P53118	TRINITY_DN311798_c0_g2_i4	3.90E-14	Putative lipase ROG1 (EC 3.1.-.-) (Revertant of glycogen synthase kinase mutation protein 1)	cellular lipid metabolic process [GO:0044255]; lipid catabolic process [GO:0016042]	cytoplasm [GO:0005737]; nucleus [GO:0005634]	acylglycerol lipase activity [GO:0047372]	GO:0005634; GO:0005737; GO:0016042; GO:0044255; GO:0047372	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN311986_c0_g1	4.481355934	12.86988668	31.61362512	1.00E-05	0.000154673	Q94B60	TRINITY_DN311986_c0_g1_i4	1.80E-12	"ATP-dependent Clp protease proteolytic subunit 4, chloroplastic (EC 3.4.21.92) (Endopeptidase ClpP4) (nClpP4) (nClpP3)"	chloroplast organization [GO:0009658]; protein quality control for misfolded or incompletely synthesized proteins [GO:0006515]; regulation of timing of transition from vegetative to reproductive phase [GO:0048510]	chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplastic endopeptidase Clp complex [GO:0009840]; chloroplast stroma [GO:0009570]; chloroplast thylakoid membrane [GO:0009535]; endopeptidase Clp complex [GO:0009368]; plastid stroma [GO:0009532]; thylakoid [GO:0009579]	ATPase binding [GO:0051117]; ATP-dependent peptidase activity [GO:0004176]; serine-type endopeptidase activity [GO:0004252]	GO:0004176; GO:0004252; GO:0006515; GO:0009368; GO:0009507; GO:0009532; GO:0009535; GO:0009570; GO:0009579; GO:0009658; GO:0009840; GO:0009941; GO:0048510; GO:0051117	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311987_c0_g1	22.48378878	9.733645503	292.3309576	1.39E-14	2.05E-12	O80800	TRINITY_DN311987_c0_g1_i1	1.70E-20	"Acyl carrier protein 2, mitochondrial (MtACP-2) (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit)"	oxidation-reduction process [GO:0055114]	mitochondrial matrix [GO:0005759]; mitochondrion [GO:0005739]; respirasome [GO:0070469]	acyl binding [GO:0000035]; acyl carrier activity [GO:0000036]; cobalt ion binding [GO:0050897]; metal ion binding [GO:0046872]	GO:0000035; GO:0000036; GO:0005739; GO:0005759; GO:0046872; GO:0050897; GO:0055114; GO:0070469	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN311987_c0_g6	21.18958067	7.311386188	161.5989043	4.77E-11	1.66E-09	P29509	TRINITY_DN311987_c0_g6_i1	2.20E-111	Thioredoxin reductase 1 (EC 1.8.1.9)	cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; removal of superoxide radicals [GO:0019430]	cytosol [GO:0005829]; mitochondrial intermembrane space [GO:0005758]; mitochondrion [GO:0005739]	ferrous iron binding [GO:0008198]; thioredoxin-disulfide reductase activity [GO:0004791]	GO:0004791; GO:0005739; GO:0005758; GO:0005829; GO:0008198; GO:0019430; GO:0034599; GO:0045454	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN312001_c0_g1	-7.636862625	9.208859407	67.59902823	2.65E-08	6.71E-07	F4JHA2	TRINITY_DN312001_c0_g1_i3	1.60E-07	"Putative GTP diphosphokinase RSH1, chloroplastic (EC 2.7.6.5) (RelA/SpoT homolog 1) (AtRSH1) (ppGpp synthetase RSH1)"	guanosine tetraphosphate metabolic process [GO:0015969]; leaf senescence [GO:0010150]; photosynthesis [GO:0015979]; response to wounding [GO:0009611]	chloroplast [GO:0009507]	"ATP binding [GO:0005524]; GTP binding [GO:0005525]; GTP diphosphokinase activity [GO:0008728]; guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity [GO:0008893]; kinase activity [GO:0016301]"	GO:0005524; GO:0005525; GO:0008728; GO:0008893; GO:0009507; GO:0009611; GO:0010150; GO:0015969; GO:0015979; GO:0016301	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN312003_c1_g6	20.44291937	6.203239446	108.0735142	8.58E-09	2.25E-07	Q5FVC7	TRINITY_DN312003_c1_g6_i1	1.10E-17	"Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 (Centaurin-beta-2) (Cnt-b2)"	cellular response to nerve growth factor stimulus [GO:1990090]; endocytic recycling [GO:0032456]	endosome membrane [GO:0010008]	GTPase activator activity [GO:0005096]; metal ion binding [GO:0046872]	GO:0005096; GO:0010008; GO:0032456; GO:0046872; GO:1990090	reviewed	Rattus norvegicus (Rat)
TRINITY_DN312005_c0_g4	21.97976684	9.747918112	298.2649736	1.12E-14	1.91E-12	Q4PBY6	TRINITY_DN312005_c0_g4_i1	3.90E-36	"Cytochrome c peroxidase, mitochondrial (CCP) (EC 1.11.1.5)"	cellular response to oxidative stress [GO:0034599]; hydrogen peroxide catabolic process [GO:0042744]; response to reactive oxygen species [GO:0000302]	chloroplast [GO:0009507]; mitochondrial intermembrane space [GO:0005758]; mitochondrial matrix [GO:0005759]	cytochrome-c peroxidase activity [GO:0004130]; heme binding [GO:0020037]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]	GO:0000302; GO:0004130; GO:0004601; GO:0005758; GO:0005759; GO:0009507; GO:0020037; GO:0034599; GO:0042744; GO:0046872	reviewed	Ustilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)
TRINITY_DN312007_c1_g4	9.719594058	1.91057342	19.58576812	0.000368765	0.003717676	Q29PG5	TRINITY_DN312007_c1_g4_i1	5.40E-26	Adenylyltransferase and sulfurtransferase MOCS3-2 (Molybdenum cofactor synthesis protein 3-2) [Includes: Molybdopterin-synthase adenylyltransferase 2 (EC 2.7.7.80) (Adenylyltransferase MOCS3-2) (Sulfur carrier protein MOCS2A adenylyltransferase 2); Molybdopterin-synthase sulfurtransferase 2 (EC 2.8.1.11) (Sulfur carrier protein MOCS2A sulfurtransferase 2) (Sulfurtransferase MOCS3-2)]	enzyme active site formation via cysteine modification to L-cysteine persulfide [GO:0018192]; Mo-molybdopterin cofactor biosynthetic process [GO:0006777]; tRNA wobble position uridine thiolation [GO:0002143]	cytosol [GO:0005829]	ATP binding [GO:0005524]; metal ion binding [GO:0046872]; molybdopterin-synthase adenylyltransferase activity [GO:0061605]; molybdopterin-synthase sulfurtransferase activity [GO:0061604]; thiosulfate sulfurtransferase activity [GO:0004792]; ubiquitin-like modifier activating enzyme activity [GO:0008641]	GO:0002143; GO:0004792; GO:0005524; GO:0005829; GO:0006777; GO:0008641; GO:0018192; GO:0046872; GO:0061604; GO:0061605	reviewed	Drosophila pseudoobscura pseudoobscura (Fruit fly)
TRINITY_DN312065_c5_g1	-4.438471171	10.14096898	27.84212159	2.35E-05	0.000325477	Q9XGM8	TRINITY_DN312065_c5_g1_i2	2.90E-31	"Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (EC 2.4.1.101) (N-acetylglucosaminyltransferase I) (GlcNAcT-I) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I) (Protein COMPLEX GLYCAN LESS 1)"	hyperosmotic response [GO:0006972]; N-glycan processing [GO:0006491]; protein glycosylation [GO:0006486]	endosome [GO:0005768]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; trans-Golgi network [GO:0005802]	"acetylglucosaminyltransferase activity [GO:0008375]; alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity [GO:0003827]; metal ion binding [GO:0046872]; protein N-acetylglucosaminyltransferase activity [GO:0016262]; transferase activity, transferring glycosyl groups [GO:0016757]"	GO:0000139; GO:0003827; GO:0005768; GO:0005794; GO:0005802; GO:0006486; GO:0006491; GO:0006972; GO:0008375; GO:0016021; GO:0016262; GO:0016757; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN312090_c4_g1	22.70683578	11.03988052	325.4331809	4.39E-15	1.18E-12	P39692	TRINITY_DN312090_c4_g1_i5	1.40E-89	Sulfite reductase [NADPH] flavoprotein component (EC 1.8.1.2)	cysteine biosynthetic process [GO:0019344]; hydrogen sulfide biosynthetic process [GO:0070814]; methionine biosynthetic process [GO:0009086]; sulfate assimilation [GO:0000103]	cytosol [GO:0005829]; sulfite reductase complex (NADPH) [GO:0009337]	flavin adenine dinucleotide binding [GO:0050660]; FMN binding [GO:0010181]; NADPH-hemoprotein reductase activity [GO:0003958]; oxidoreductase activity [GO:0016491]; sulfite reductase (NADPH) activity [GO:0004783]	GO:0000103; GO:0003958; GO:0004783; GO:0005829; GO:0009086; GO:0009337; GO:0010181; GO:0016491; GO:0019344; GO:0050660; GO:0070814	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN312093_c0_g7	22.11530915	10.9939885	502.8796712	3.80E-17	1.18E-13	Q8GYX0	TRINITY_DN312093_c0_g7_i1	9.90E-17	MOB kinase activator-like 1B (Mob1 homolog 1B) (Mps one binder kinase activator-like 1B)			metal ion binding [GO:0046872]	GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN312095_c1_g3	-10.4089716	2.373583163	8.776888857	0.008324626	0.048429919	P37367	TRINITY_DN312095_c1_g3_i1	9.10E-28	Cation-transporting ATPase pma1 (EC 3.6.3.-)		integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	ATPase-coupled calcium transmembrane transporter activity [GO:0005388]; ATP binding [GO:0005524]; hydrolase activity [GO:0016787]	GO:0005388; GO:0005524; GO:0005886; GO:0016021; GO:0016787	reviewed	Synechocystis sp. (strain PCC 6803 / Kazusa)
TRINITY_DN312702_c0_g1	15.06152672	4.177449529	18.10545322	0.000532255	0.005071839	A6ZWD3	TRINITY_DN312702_c0_g1_i2	4.90E-26	ATP-dependent RNA helicase DBP1 (EC 3.6.4.13) (DEAD box protein 1) (Helicase CA1)		cytoplasm [GO:0005737]	ATP binding [GO:0005524]; helicase activity [GO:0004386]; translation initiation factor activity [GO:0003743]	GO:0003743; GO:0004386; GO:0005524; GO:0005737	reviewed	Saccharomyces cerevisiae (strain YJM789) (Baker's yeast)
TRINITY_DN312705_c0_g2	3.103542008	11.79349553	19.77548784	0.000184246	0.002096475	Q5H7P5	TRINITY_DN312705_c0_g2_i2	9.40E-80	Mannosylglycoprotein endo-beta-mannosidase (Endo-beta-mannosidase) (EC 3.2.1.152) [Cleaved into: Mannosylglycoprotein endo-beta-mannosidase 31 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 28 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 42 kDa subunit]	carbohydrate metabolic process [GO:0005975]		mannosylglycoprotein endo-beta-mannosidase activity [GO:0033947]	GO:0005975; GO:0033947	reviewed	Lilium longiflorum (Trumpet lily)
TRINITY_DN312705_c0_g3	-8.10269297	1.689066271	8.709875408	0.008531837	0.04917325	F4I9Q5	TRINITY_DN312705_c0_g3_i1	1.20E-07	"DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (EC 3.6.4.13)"		chloroplast [GO:0009507]	ATP binding [GO:0005524]; ATP-dependent 3'-5' RNA helicase activity [GO:0034459]; RNA binding [GO:0003723]	GO:0003723; GO:0005524; GO:0009507; GO:0034459	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN312707_c1_g1	22.99037986	10.35586641	292.7527345	1.37E-14	2.05E-12	Q9C5X9	TRINITY_DN312707_c1_g1_i1	3.40E-38	Histone acetyltransferase HAC1 (EC 2.3.1.48)	"regulation of transcription, DNA-templated [GO:0006355]"	nucleus [GO:0005634]	histone acetyltransferase activity [GO:0004402]; transcription coregulator activity [GO:0003712]; zinc ion binding [GO:0008270]	GO:0003712; GO:0004402; GO:0005634; GO:0006355; GO:0008270	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN312713_c2_g1	3.877497018	11.05848893	26.69763522	3.07E-05	0.000417181	Q7XP59	TRINITY_DN312713_c2_g1_i1	2.90E-256	Glutamate receptor 3.1 (Ligand-gated ion channel 3.1)		integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	ionotropic glutamate receptor activity [GO:0004970]	GO:0004970; GO:0005886; GO:0016021	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN312716_c1_g1	7.598590766	5.607430734	19.00886801	0.00022896	0.00246342	O48649	TRINITY_DN312716_c1_g1_i6	9.40E-52	ADP-ribosylation factor 1	protein transport [GO:0015031]; vesicle-mediated transport [GO:0016192]	Golgi apparatus [GO:0005794]	GTP binding [GO:0005525]	GO:0005525; GO:0005794; GO:0015031; GO:0016192	reviewed	Salix bakko (Japanese willow)
TRINITY_DN312717_c0_g3	6.091464859	3.411118213	9.684961559	0.004899978	0.031648837	Q6CPQ9	TRINITY_DN312717_c0_g3_i1	1.00E-123	Elongation factor 2 (EF-2)		cytoplasm [GO:0005737]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; translation elongation factor activity [GO:0003746]	GO:0003746; GO:0003924; GO:0005525; GO:0005737	reviewed	Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast) (Candida sphaerica)
TRINITY_DN312719_c0_g1	6.16469469	12.55369129	57.65666297	1.03E-07	2.23E-06	F4IBB2	TRINITY_DN312719_c0_g1_i5	5.00E-11	Phosphoglycerate mutase-like protein 2		chloroplast [GO:0009507]		GO:0009507	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN312725_c0_g2	19.86585994	8.432488302	237.3826541	1.27E-13	9.15E-12	Q7S4N5	TRINITY_DN312725_c0_g2_i1	3.90E-43	Metacaspase-1B (EC 3.4.22.-)	apoptotic process [GO:0006915]		cysteine-type peptidase activity [GO:0008234]	GO:0006915; GO:0008234	reviewed	Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
TRINITY_DN312726_c1_g1	13.85102849	3.575720753	35.39542255	1.57E-05	0.000229544	Q9ZV48	TRINITY_DN312726_c1_g1_i1	2.20E-14	"Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 11) (AtTPS11)"	dephosphorylation [GO:0016311]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; mitochondrion [GO:0005739]	"transferase activity, transferring glycosyl groups [GO:0016757]"	GO:0005737; GO:0005739; GO:0005829; GO:0016311; GO:0016757	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN312726_c1_g3	21.91716547	12.27255238	406.6524859	3.91E-16	6.05E-13	O80738	TRINITY_DN312726_c1_g3_i1	2.20E-11	"Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 10) (AtTPS10)"	dephosphorylation [GO:0016311]	cytoplasm [GO:0005737]; cytosol [GO:0005829]	"transferase activity, transferring glycosyl groups [GO:0016757]"	GO:0005737; GO:0005829; GO:0016311; GO:0016757	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN312728_c0_g1	-10.8553251	3.568409672	18.8076989	0.000319118	0.003321885	Q8BW41	TRINITY_DN312728_c0_g1_i2	1.50E-07	"Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 (POMGnT2) (EC 2.4.1.312) (Extracellular O-linked N-acetylglucosamine transferase-like) (Glycosyltransferase-like domain-containing protein 2)"	neuron migration [GO:0001764]; protein O-linked glycosylation [GO:0006493]; protein O-linked mannosylation [GO:0035269]	endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]	acetylglucosaminyltransferase activity [GO:0008375]; protein O-GlcNAc transferase activity [GO:0097363]	GO:0001764; GO:0005783; GO:0005789; GO:0006493; GO:0008375; GO:0016021; GO:0035269; GO:0097363	reviewed	Mus musculus (Mouse)
TRINITY_DN312737_c2_g3	13.55195287	3.39010961	28.33233867	5.57E-05	0.000727941	Q3UX83	TRINITY_DN312737_c2_g3_i1	3.60E-47	Probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 (ACC synthase-like protein 2)	biosynthetic process [GO:0009058]		catalytic activity [GO:0003824]; pyridoxal phosphate binding [GO:0030170]	GO:0003824; GO:0009058; GO:0030170	reviewed	Mus musculus (Mouse)
TRINITY_DN312737_c2_g4	21.90152756	12.55159535	262.9302492	4.31E-14	3.92E-12	Q39613	TRINITY_DN312737_c2_g4_i2	8.10E-71	Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) (Cyclophilin) (Cyp) (Cyclosporin A-binding protein) (Rotamase) (allergen Cat r 1)	protein folding [GO:0006457]; protein peptidyl-prolyl isomerization [GO:0000413]; regulation of protein refolding [GO:0061083]	cytoplasm [GO:0005737]	peptidyl-prolyl cis-trans isomerase activity [GO:0003755]	GO:0000413; GO:0003755; GO:0005737; GO:0006457; GO:0061083	reviewed	Catharanthus roseus (Madagascar periwinkle) (Vinca rosea)
TRINITY_DN312737_c2_g5	10.46890596	2.132198239	15.74167902	0.000991517	0.008699801	F4JIU4	TRINITY_DN312737_c2_g5_i1	1.60E-19	Myosin-4 (MYOSIN VIII B) (AtVIIIB)	actin filament-based movement [GO:0030048]	myosin complex [GO:0016459]	actin filament binding [GO:0051015]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]	GO:0003774; GO:0005516; GO:0005524; GO:0016459; GO:0030048; GO:0051015	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN312738_c3_g1	-3.072784802	8.554363894	15.60211356	0.000635624	0.005961378	Q9SEE9	TRINITY_DN312738_c3_g1_i1	4.40E-29	Serine/arginine-rich splicing factor SR45 (At-SR45) (AtSR45) (Serine/arginine-rich ribonucleoprotein 1)	"mRNA splicing, via spliceosome [GO:0000398]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; RNA splicing [GO:0008380]; sugar mediated signaling pathway [GO:0010182]"	ASAP complex [GO:0061574]; cytoplasm [GO:0005737]; nuclear speck [GO:0016607]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; spliceosomal complex [GO:0005681]	RNA binding [GO:0003723]	GO:0000381; GO:0000398; GO:0003723; GO:0005654; GO:0005681; GO:0005730; GO:0005737; GO:0008380; GO:0010182; GO:0016607; GO:0061574	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN312740_c0_g1	-2.800516522	8.147743464	11.37766175	0.002620579	0.019543837	Q9FGL9	TRINITY_DN312740_c0_g1_i1	4.20E-54	Polypyrimidine tract-binding protein homolog 2	"mRNA processing [GO:0006397]; regulation of alternative mRNA splicing, via spliceosome [GO:0000381]; regulation of RNA splicing [GO:0043484]; regulation of translation [GO:0006417]; RNA splicing [GO:0008380]; seed germination [GO:0009845]"	cytoplasm [GO:0005737]; nucleus [GO:0005634]; P-body [GO:0000932]	mRNA binding [GO:0003729]; RNA binding [GO:0003723]	GO:0000381; GO:0000932; GO:0003723; GO:0003729; GO:0005634; GO:0005737; GO:0006397; GO:0006417; GO:0008380; GO:0009845; GO:0043484	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN312741_c6_g2	13.21126998	3.085004636	30.99060957	3.38E-05	0.000455451	P0DM41	TRINITY_DN312741_c6_g2_i1	1.40E-25	Actin-1	actin cytoskeleton organization [GO:0030036]; cortical actin cytoskeleton organization [GO:0030866]; embryo development ending in birth or egg hatching [GO:0009792]; mitotic cytokinesis [GO:0000281]	actin cytoskeleton [GO:0015629]; cytoplasm [GO:0005737]	ATP binding [GO:0005524]	GO:0000281; GO:0005524; GO:0005737; GO:0009792; GO:0015629; GO:0030036; GO:0030866	reviewed	Caenorhabditis elegans
TRINITY_DN312741_c6_g4	5.389294569	6.989233198	10.65704734	0.003404816	0.023787276	P22131	TRINITY_DN312741_c6_g4_i1	8.00E-29	Actin-1		cytoplasm [GO:0005737]; cytoskeleton [GO:0005856]	ATP binding [GO:0005524]	GO:0005524; GO:0005737; GO:0005856	reviewed	Phytophthora infestans (Potato late blight fungus) (Botrytis infestans)
TRINITY_DN312745_c1_g1	13.90953969	3.564372778	34.17776651	1.93E-05	0.000272781	P22216	TRINITY_DN312745_c1_g1_i6	2.90E-19	Serine/threonine-protein kinase RAD53 (EC 2.7.12.1) (CHEK2 homolog) (Serine-protein kinase 1)	deoxyribonucleoside triphosphate biosynthetic process [GO:0009202]; DNA damage checkpoint [GO:0000077]; DNA repair [GO:0006281]; DNA replication initiation [GO:0006270]; mitotic DNA damage checkpoint [GO:0044773]; negative regulation of phosphorylation [GO:0042326]; protein localization [GO:0008104]; protein phosphorylation [GO:0006468]; signal transduction in response to DNA damage [GO:0042770]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]	ATP binding [GO:0005524]; DNA replication origin binding [GO:0003688]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; protein serine/threonine kinase activity [GO:0004674]; protein tyrosine kinase activity [GO:0004713]	GO:0000077; GO:0003688; GO:0004672; GO:0004674; GO:0004712; GO:0004713; GO:0005524; GO:0005634; GO:0005737; GO:0005829; GO:0006270; GO:0006281; GO:0006468; GO:0008104; GO:0009202; GO:0042326; GO:0042770; GO:0044773	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN312745_c1_g2	9.578113942	2.906501943	12.65624591	0.002416085	0.018291	P22612	TRINITY_DN312745_c1_g2_i1	4.90E-22	cAMP-dependent protein kinase catalytic subunit gamma (PKA C-gamma) (EC 2.7.11.11)	activation of protein kinase A activity [GO:0034199]; blood coagulation [GO:0007596]; cellular response to glucagon stimulus [GO:0071377]; high-density lipoprotein particle assembly [GO:0034380]; male gonad development [GO:0008584]; renal water homeostasis [GO:0003091]; spermatogenesis [GO:0007283]; stimulatory C-type lectin receptor signaling pathway [GO:0002223]	ciliary base [GO:0097546]; cytosol [GO:0005829]; intercellular bridge [GO:0045171]; nucleoplasm [GO:0005654]	ATP binding [GO:0005524]; cAMP-dependent protein kinase activity [GO:0004691]	GO:0002223; GO:0003091; GO:0004691; GO:0005524; GO:0005654; GO:0005829; GO:0007283; GO:0007596; GO:0008584; GO:0034199; GO:0034380; GO:0045171; GO:0071377; GO:0097546	reviewed	Homo sapiens (Human)
TRINITY_DN312745_c1_g3	16.26142318	4.237668106	47.96818853	2.43E-06	4.19E-05	P22216	TRINITY_DN312745_c1_g3_i1	8.40E-21	Serine/threonine-protein kinase RAD53 (EC 2.7.12.1) (CHEK2 homolog) (Serine-protein kinase 1)	deoxyribonucleoside triphosphate biosynthetic process [GO:0009202]; DNA damage checkpoint [GO:0000077]; DNA repair [GO:0006281]; DNA replication initiation [GO:0006270]; mitotic DNA damage checkpoint [GO:0044773]; negative regulation of phosphorylation [GO:0042326]; protein localization [GO:0008104]; protein phosphorylation [GO:0006468]; signal transduction in response to DNA damage [GO:0042770]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]	ATP binding [GO:0005524]; DNA replication origin binding [GO:0003688]; protein kinase activity [GO:0004672]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; protein serine/threonine kinase activity [GO:0004674]; protein tyrosine kinase activity [GO:0004713]	GO:0000077; GO:0003688; GO:0004672; GO:0004674; GO:0004712; GO:0004713; GO:0005524; GO:0005634; GO:0005737; GO:0005829; GO:0006270; GO:0006281; GO:0006468; GO:0008104; GO:0009202; GO:0042326; GO:0042770; GO:0044773	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN312745_c1_g6	11.96082469	2.531168586	24.16484689	0.000130059	0.001554175	Q03042	TRINITY_DN312745_c1_g6_i1	1.00E-13	"cGMP-dependent protein kinase, isozyme 1 (cGK) (EC 2.7.11.12)"	larval somatic muscle development [GO:0007526]; protein phosphorylation [GO:0006468]	cytoplasm [GO:0005737]	ATP binding [GO:0005524]; cGMP binding [GO:0030553]; cGMP-dependent protein kinase activity [GO:0004692]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0004692; GO:0005524; GO:0005737; GO:0006468; GO:0007526; GO:0030553	reviewed	Drosophila melanogaster (Fruit fly)
TRINITY_DN312752_c3_g1	22.09227709	9.169052818	335.9342254	3.12E-15	1.07E-12	P80576	TRINITY_DN312752_c3_g1_i1	2.90E-126	Phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (DAHP synthase) (Phospho-2-keto-3-deoxyheptonate aldolase)	aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423]		3-deoxy-7-phosphoheptulonate synthase activity [GO:0003849]	GO:0003849; GO:0009073; GO:0009423	reviewed	Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
TRINITY_DN312753_c3_g2	-2.634703802	9.700697081	11.51921211	0.002491129	0.018804989	Q42564	TRINITY_DN312753_c3_g2_i1	2.00E-95	L-ascorbate peroxidase 3 (AtAPx03) (EC 1.11.1.11)	cellular response to oxidative stress [GO:0034599]; hydrogen peroxide catabolic process [GO:0042744]; response to cytokinin [GO:0009735]; response to oxidative stress [GO:0006979]; response to reactive oxygen species [GO:0000302]	chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; glyoxysomal membrane [GO:0046861]; integral component of membrane [GO:0016021]; mitochondrion [GO:0005739]; peroxisomal membrane [GO:0005778]; peroxisome [GO:0005777]; plasmodesma [GO:0009506]; plastid [GO:0009536]; vacuolar membrane [GO:0005774]; vacuole [GO:0005773]	heme binding [GO:0020037]; L-ascorbate peroxidase activity [GO:0016688]; metal ion binding [GO:0046872]; peroxidase activity [GO:0004601]	GO:0000302; GO:0004601; GO:0005739; GO:0005773; GO:0005774; GO:0005777; GO:0005778; GO:0006979; GO:0009506; GO:0009507; GO:0009536; GO:0009735; GO:0009941; GO:0016021; GO:0016688; GO:0020037; GO:0034599; GO:0042744; GO:0046861; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN312754_c1_g1	8.503976812	1.721782432	15.75929604	0.000986754	0.008699801	P11670	TRINITY_DN312754_c1_g1_i1	4.80E-21	Basic form of pathogenesis-related protein 1 (PRP 1)	defense response [GO:0006952]; response to biotic stimulus [GO:0009607]	extracellular region [GO:0005576]		GO:0005576; GO:0006952; GO:0009607	reviewed	Nicotiana tabacum (Common tobacco)
TRINITY_DN312799_c0_g2	-8.775027439	4.524246415	9.347324354	0.005975064	0.037059767	Q0WPU1	TRINITY_DN312799_c0_g2_i1	4.70E-123	Myosin-15 (Myosin XI I) (AtXI-I)	actin filament-based movement [GO:0030048]; actin filament organization [GO:0007015]; nuclear migration [GO:0007097]; regulation of establishment or maintenance of cell polarity regulating cell shape [GO:2000769]	cytoplasm [GO:0005737]; myosin complex [GO:0016459]; nuclear membrane [GO:0031965]	actin filament binding [GO:0051015]; ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; motor activity [GO:0003774]	GO:0003774; GO:0005516; GO:0005524; GO:0005737; GO:0007015; GO:0007097; GO:0016459; GO:0030048; GO:0031965; GO:0051015; GO:2000769	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN314109_c1_g1	-12.48693594	5.651786374	32.73731447	7.90E-06	0.000125313	Q9MAB3	TRINITY_DN314109_c1_g1_i1	2.40E-188	Probable nucleolar protein 5-2 (MAR-binding NOP56/58 homolog 2) (Nucleolar protein 58-2)	ribosome biogenesis [GO:0042254]	box C/D snoRNP complex [GO:0031428]; membrane [GO:0016020]; nucleolus [GO:0005730]; small-subunit processome [GO:0032040]	snoRNA binding [GO:0030515]	GO:0005730; GO:0016020; GO:0030515; GO:0031428; GO:0032040; GO:0042254	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN314109_c2_g1	-3.737763781	6.230769696	9.228279868	0.005840778	0.036299614	O81832	TRINITY_DN314109_c2_g1_i1	1.40E-07	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (EC 2.7.11.1)	protein phosphorylation [GO:0006468]; recognition of pollen [GO:0048544]	plasma membrane [GO:0005886]	ATP binding [GO:0005524]; calmodulin binding [GO:0005516]; carbohydrate binding [GO:0030246]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005516; GO:0005524; GO:0005886; GO:0006468; GO:0030246; GO:0048544	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN314157_c1_g1	-13.648786	5.554335831	37.15359512	3.21E-06	5.43E-05	Q54W07	TRINITY_DN314157_c1_g1_i1	1.70E-43	EKC/KEOPS complex subunit bud32 (EC 3.6.-.-) (Atypical serine/threonine protein kinase bud32) (EC 2.7.11.1)	protein phosphorylation [GO:0006468]; tRNA processing [GO:0008033]; tRNA threonylcarbamoyladenosine metabolic process [GO:0070525]	cytosol [GO:0005829]; EKC/KEOPS complex [GO:0000408]; nucleus [GO:0005634]	ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; protein serine/threonine kinase activity [GO:0004674]	GO:0000408; GO:0004674; GO:0005524; GO:0005634; GO:0005829; GO:0006468; GO:0008033; GO:0016787; GO:0070525	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN314157_c1_g3	9.233379477	6.550283609	17.84009945	0.000321581	0.003328744	A2XRZ0	TRINITY_DN314157_c1_g3_i1	1.00E-11	Probable aldo-keto reductase 2 (EC 1.1.1.-)			oxidoreductase activity [GO:0016491]	GO:0016491	reviewed	Oryza sativa subsp. indica (Rice)
TRINITY_DN314160_c4_g1	-5.448514872	8.018814064	23.77873692	6.32E-05	0.000807954	Q9C9C0	TRINITY_DN314160_c4_g1_i1	3.80E-41	"Serine protease SPPA, chloroplastic (EC 3.4.21.-) (Signal peptide peptidase SPPA)"	proteolysis [GO:0006508]; signal peptide processing [GO:0006465]	chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; chloroplast stroma [GO:0009570]; chloroplast thylakoid [GO:0009534]; chloroplast thylakoid membrane [GO:0009535]; integral component of membrane [GO:0016021]	serine-type endopeptidase activity [GO:0004252]	GO:0004252; GO:0006465; GO:0006508; GO:0009507; GO:0009534; GO:0009535; GO:0009570; GO:0009941; GO:0016021	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN314167_c0_g1	2.311472236	10.64273939	13.5533986	0.00123419	0.010408224	Q9LMG7	TRINITY_DN314167_c0_g1_i2	2.10E-57	Probable inactive purple acid phosphatase 2	protein insertion into mitochondrial outer membrane [GO:0045040]; protein targeting to mitochondrion [GO:0006626]; regulation of carbohydrate metabolic process [GO:0006109]	chloroplast [GO:0009507]; chloroplast envelope [GO:0009941]; endosome [GO:0005768]; extracellular region [GO:0005576]; Golgi apparatus [GO:0005794]; mitochondrial envelope [GO:0005740]; mitochondrion [GO:0005739]; trans-Golgi network [GO:0005802]	acid phosphatase activity [GO:0003993]; metal ion binding [GO:0046872]; mitochondrion targeting sequence binding [GO:0030943]	GO:0003993; GO:0005576; GO:0005739; GO:0005740; GO:0005768; GO:0005794; GO:0005802; GO:0006109; GO:0006626; GO:0009507; GO:0009941; GO:0030943; GO:0045040; GO:0046872	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN314168_c2_g5	20.00680356	8.322276112	181.9327661	2.03E-12	8.72E-11	O22941	TRINITY_DN314168_c2_g5_i1	7.40E-119	"Insulin-degrading enzyme-like 1, peroxisomal (EC 3.4.24.-) (Insulysin-like 1) (Peroxisomal M16 protease) (Zinc-metallopeptidase)"	proteolysis involved in cellular protein catabolic process [GO:0051603]	mitochondrion [GO:0005739]; peroxisome [GO:0005777]	metal ion binding [GO:0046872]; metalloendopeptidase activity [GO:0004222]	GO:0004222; GO:0005739; GO:0005777; GO:0046872; GO:0051603	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN314170_c2_g1	-7.618124439	2.910022428	9.712642203	0.004848564	0.031437399	O65202	TRINITY_DN314170_c2_g1_i1	1.20E-84	Peroxisomal acyl-coenzyme A oxidase 1 (AOX 1) (EC 1.3.3.6) (Long-chain acyl-CoA oxidase) (AtCX1)	fatty acid beta-oxidation [GO:0006635]; fatty acid beta-oxidation using acyl-CoA oxidase [GO:0033540]; jasmonic acid biosynthetic process [GO:0009695]; lipid homeostasis [GO:0055088]; long-chain fatty acid metabolic process [GO:0001676]; response to cadmium ion [GO:0046686]; response to fungus [GO:0009620]; response to wounding [GO:0009611]	peroxisome [GO:0005777]; plasmodesma [GO:0009506]	acyl-CoA oxidase activity [GO:0003997]; FAD binding [GO:0071949]; fatty acid binding [GO:0005504]; flavin adenine dinucleotide binding [GO:0050660]	GO:0001676; GO:0003997; GO:0005504; GO:0005777; GO:0006635; GO:0009506; GO:0009611; GO:0009620; GO:0009695; GO:0033540; GO:0046686; GO:0050660; GO:0055088; GO:0071949	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN314173_c1_g1	-6.142137862	8.301496052	28.97910541	1.80E-05	0.000257291	Q9M084	TRINITY_DN314173_c1_g1_i1	3.90E-200	"Aspartate--tRNA ligase 2, cytoplasmic (EC 6.1.1.12) (Aspartyl-tRNA synthetase) (AspRS) (Protein IMPAIRED IN BABA-INDUCED DISEASE IMMUNITY 1)"	aspartyl-tRNA aminoacylation [GO:0006422]; defense response to fungus [GO:0050832]; response to cadmium ion [GO:0046686]	aminoacyl-tRNA synthetase multienzyme complex [GO:0017101]; cytosol [GO:0005829]; endoplasmic reticulum [GO:0005783]	aspartate-tRNA ligase activity [GO:0004815]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]	GO:0003677; GO:0003723; GO:0004815; GO:0005524; GO:0005783; GO:0005829; GO:0006422; GO:0017101; GO:0046686; GO:0046872; GO:0050832	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN314173_c2_g1	-3.91158338	6.861367345	10.18438859	0.004057555	0.02736729	Q7TPQ3	TRINITY_DN314173_c2_g1_i7	3.00E-13	"E3 ubiquitin-protein ligase SHPRH (EC 2.3.2.27) (EC 3.6.4.-) (RING-type E3 ubiquitin transferase SHPRH) (SNF2, histone-linker, PHD and RING finger domain-containing helicase)"	cellular response to DNA damage stimulus [GO:0006974]; DNA repair [GO:0006281]; nucleosome assembly [GO:0006334]; protein polyubiquitination [GO:0000209]	nucleosome [GO:0000786]; nucleus [GO:0005634]	ATP binding [GO:0005524]; DNA binding [GO:0003677]; helicase activity [GO:0004386]; metal ion binding [GO:0046872]; ubiquitin protein ligase activity [GO:0061630]; ubiquitin protein ligase binding [GO:0031625]; ubiquitin-protein transferase activity [GO:0004842]	GO:0000209; GO:0000786; GO:0003677; GO:0004386; GO:0004842; GO:0005524; GO:0005634; GO:0006281; GO:0006334; GO:0006974; GO:0031625; GO:0046872; GO:0061630	reviewed	Mus musculus (Mouse)
TRINITY_DN314176_c0_g1	8.05313199	1.742890781	10.26362526	0.0051964	0.032889281	Q94AU2	TRINITY_DN314176_c0_g1_i1	7.60E-19	25.3 kDa vesicle transport protein (AtSEC22)	"endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; protein transport [GO:0015031]; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum [GO:0006890]; vesicle fusion with Golgi apparatus [GO:0048280]"	endoplasmic reticulum [GO:0005783]; endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; endoplasmic reticulum membrane [GO:0005789]; ER to Golgi transport vesicle membrane [GO:0012507]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]; SNARE complex [GO:0031201]	SNAP receptor activity [GO:0005484]	GO:0000139; GO:0005484; GO:0005783; GO:0005789; GO:0005793; GO:0005794; GO:0005886; GO:0006888; GO:0006890; GO:0012507; GO:0015031; GO:0016021; GO:0031201; GO:0048280	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN314176_c1_g1	-4.819715219	9.911590593	31.63708588	9.99E-06	0.000154658	A0KP37	TRINITY_DN314176_c1_g1_i1	1.70E-22	Siroheme synthase 2 [Includes: Uroporphyrinogen-III C-methyltransferase 2 (Urogen III methylase 2) (EC 2.1.1.107) (SUMT 2) (Uroporphyrinogen III methylase 2) (UROM 2); Precorrin-2 dehydrogenase 2 (EC 1.3.1.76); Sirohydrochlorin ferrochelatase 2 (EC 4.99.1.4)]	cobalamin biosynthetic process [GO:0009236]; siroheme biosynthetic process [GO:0019354]		NAD binding [GO:0051287]; precorrin-2 dehydrogenase activity [GO:0043115]; sirohydrochlorin ferrochelatase activity [GO:0051266]; uroporphyrin-III C-methyltransferase activity [GO:0004851]	GO:0004851; GO:0009236; GO:0019354; GO:0043115; GO:0051266; GO:0051287	reviewed	Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240)
TRINITY_DN314179_c1_g1	3.071529899	10.81804407	16.85031517	0.000432408	0.004248583	Q99ND9	TRINITY_DN314179_c1_g1_i8	1.30E-06	RWD domain-containing protein 1 (Small androgen receptor-interacting protein)	androgen receptor signaling pathway [GO:0030521]; cell aging [GO:0007569]; cellular response to oxidative stress [GO:0034599]; cellular response to testosterone stimulus [GO:0071394]; cytoplasmic translation [GO:0002181]; positive regulation of androgen receptor activity [GO:2000825]	cytoplasm [GO:0005737]; polysome [GO:0005844]		GO:0002181; GO:0005737; GO:0005844; GO:0007569; GO:0030521; GO:0034599; GO:0071394; GO:2000825	reviewed	Rattus norvegicus (Rat)
TRINITY_DN314196_c0_g1	19.81661176	8.269819129	209.8938	4.62E-13	2.70E-11	O75643	TRINITY_DN314196_c0_g1_i1	0	U5 small nuclear ribonucleoprotein 200 kDa helicase (EC 3.6.4.13) (Activating signal cointegrator 1 complex subunit 3-like 1) (BRR2 homolog) (U5 snRNP-specific 200 kDa protein) (U5-200KD)	"cis assembly of pre-catalytic spliceosome [GO:0000354]; mRNA splicing, via spliceosome [GO:0000398]; osteoblast differentiation [GO:0001649]; spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) [GO:0000388]"	catalytic step 2 spliceosome [GO:0071013]; membrane [GO:0016020]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; post-mRNA release spliceosomal complex [GO:0071014]; spliceosomal complex [GO:0005681]; U4/U6 x U5 tri-snRNP complex [GO:0046540]; U5 snRNP [GO:0005682]	ATP binding [GO:0005524]; ATP-dependent helicase activity [GO:0008026]; ATP-dependent RNA helicase activity [GO:0004004]; identical protein binding [GO:0042802]; RNA binding [GO:0003723]	GO:0000354; GO:0000388; GO:0000398; GO:0001649; GO:0003723; GO:0004004; GO:0005524; GO:0005634; GO:0005654; GO:0005681; GO:0005682; GO:0008026; GO:0016020; GO:0042802; GO:0046540; GO:0071013; GO:0071014	reviewed	Homo sapiens (Human)
TRINITY_DN314218_c0_g2	-7.058719599	7.573582733	31.79417334	9.66E-06	0.000150246	Q00IB6	TRINITY_DN314218_c0_g2_i1	5.30E-57	RNA polymerase II C-terminal domain phosphatase-like 4 (FCP-like 4) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 4) (AtCPL4) (CTD phosphatase-like 4)	dephosphorylation of RNA polymerase II C-terminal domain [GO:0070940]; response to salt stress [GO:0009651]	nucleus [GO:0005634]	metal ion binding [GO:0046872]; protein C-terminus binding [GO:0008022]; RNA binding [GO:0003723]; RNA polymerase II CTD heptapeptide repeat phosphatase activity [GO:0008420]	GO:0003723; GO:0005634; GO:0008022; GO:0008420; GO:0009651; GO:0046872; GO:0070940	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN314234_c0_g5	24.93546425	10.07390608	397.4547786	1.11E-14	1.91E-12	Q55D16	TRINITY_DN314234_c0_g5_i1	3.30E-43	KIN17-like protein	cellular response to DNA damage stimulus [GO:0006974]; DNA replication [GO:0006260]	nucleus [GO:0005634]	double-stranded DNA binding [GO:0003690]; metal ion binding [GO:0046872]; RNA binding [GO:0003723]	GO:0003690; GO:0003723; GO:0005634; GO:0006260; GO:0006974; GO:0046872	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN314236_c0_g1	18.93164424	8.887682618	186.6668864	1.56E-12	7.09E-11	Q12019	TRINITY_DN314236_c0_g1_i1	2.30E-301	Midasin (Dynein-related AAA-ATPase REA1) (MIDAS-containing protein) (Ribosome export/assembly protein 1)	protein-RNA complex remodeling [GO:0110136]; regulation of ribosomal subunit export from nucleus [GO:2000200]; ribosomal large subunit assembly [GO:0000027]; rRNA processing [GO:0006364]	mitochondrion [GO:0005739]; nucleolus [GO:0005730]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]	ATPase activity [GO:0016887]; ATP binding [GO:0005524]	GO:0000027; GO:0005524; GO:0005634; GO:0005654; GO:0005730; GO:0005739; GO:0006364; GO:0016887; GO:0110136; GO:2000200	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN314275_c4_g1	9.331600392	3.403284093	15.81240095	0.000595108	0.00559836	O93428	TRINITY_DN314275_c4_g1_i1	8.20E-34	Cathepsin D (EC 3.4.23.5)	proteolysis [GO:0006508]	lysosome [GO:0005764]	aspartic-type endopeptidase activity [GO:0004190]	GO:0004190; GO:0005764; GO:0006508	reviewed	Chionodraco hamatus (Antarctic teleost icefish) (Chaenichthys rhinoceratus hamatus)
TRINITY_DN314626_c2_g5	-9.652098598	2.753878211	13.84002172	0.001349095	0.011134527	O32472	TRINITY_DN314626_c2_g5_i2	8.10E-17	(R)-specific enoyl-CoA hydratase (EC 4.2.1.119)	fatty acid biosynthetic process [GO:0006633]; oxidation-reduction process [GO:0055114]	fatty acid synthase complex [GO:0005835]	fatty acid synthase activity [GO:0004312]; lyase activity [GO:0016829]	GO:0004312; GO:0005835; GO:0006633; GO:0016829; GO:0055114	reviewed	Aeromonas caviae (Aeromonas punctata)
TRINITY_DN314627_c4_g1	-3.17715461	8.768595676	12.23495234	0.001935306	0.01501196	Q9M9E8	TRINITY_DN314627_c4_g1_i1	2.30E-305	F-box protein At1g78280		cytosol [GO:0005829]		GO:0005829	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN314629_c0_g1	3.265234636	13.8900621	16.17980865	0.000530923	0.005071839	Q6DJC8	TRINITY_DN314629_c0_g1_i3	1.80E-06	Transmembrane protein 53-B		integral component of membrane [GO:0016021]		GO:0016021	reviewed	Xenopus laevis (African clawed frog)
TRINITY_DN314641_c0_g1	12.42074384	3.671270142	15.09979588	0.001184001	0.010094994	P07872	TRINITY_DN314641_c0_g1_i2	4.70E-104	"Peroxisomal acyl-coenzyme A oxidase 1 (AOX) (EC 1.3.3.6) (Palmitoyl-CoA oxidase) [Cleaved into: Peroxisomal acyl-CoA oxidase 1, A chain; Peroxisomal acyl-CoA oxidase 1, B chain; Peroxisomal acyl-CoA oxidase 1, C chain]"	fatty acid beta-oxidation using acyl-CoA oxidase [GO:0033540]; fatty acid oxidation [GO:0019395]; generation of precursor metabolites and energy [GO:0006091]; lipid homeostasis [GO:0055088]; lipid metabolic process [GO:0006629]; prostaglandin metabolic process [GO:0006693]; very long-chain fatty acid metabolic process [GO:0000038]	peroxisomal matrix [GO:0005782]; peroxisome [GO:0005777]	acyl-CoA oxidase activity [GO:0003997]; FAD binding [GO:0071949]; fatty acid binding [GO:0005504]; flavin adenine dinucleotide binding [GO:0050660]; palmitoyl-CoA oxidase activity [GO:0016401]; protein homodimerization activity [GO:0042803]	GO:0000038; GO:0003997; GO:0005504; GO:0005777; GO:0005782; GO:0006091; GO:0006629; GO:0006693; GO:0016401; GO:0019395; GO:0033540; GO:0042803; GO:0050660; GO:0055088; GO:0071949	reviewed	Rattus norvegicus (Rat)
TRINITY_DN314643_c0_g3	12.19866233	9.857255971	186.9077095	1.54E-12	7.09E-11	P20825	TRINITY_DN314643_c0_g3_i1	1.10E-55	Retrovirus-related Pol polyprotein from transposon 297 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]	DNA integration [GO:0015074]		aspartic-type endopeptidase activity [GO:0004190]; endonuclease activity [GO:0004519]; nucleic acid binding [GO:0003676]; RNA-directed DNA polymerase activity [GO:0003964]	GO:0003676; GO:0003964; GO:0004190; GO:0004519; GO:0015074	reviewed	Drosophila melanogaster (Fruit fly)
TRINITY_DN314645_c3_g1	21.01132629	8.243714842	197.8965	8.52E-13	4.53E-11	P48510	TRINITY_DN314645_c3_g1_i1	1.90E-08	Ubiquitin domain-containing protein DSK2	protein localization to vacuole [GO:0072665]; spindle pole body duplication [GO:0030474]; ubiquitin-dependent ERAD pathway [GO:0030433]; ubiquitin-dependent protein catabolic process [GO:0006511]	cytosol [GO:0005829]; nucleus [GO:0005634]	"polyubiquitin modification-dependent protein binding [GO:0031593]; protein binding, bridging [GO:0030674]"	GO:0005634; GO:0005829; GO:0006511; GO:0030433; GO:0030474; GO:0030674; GO:0031593; GO:0072665	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN314645_c3_g2	9.01213351	2.014836275	14.07860694	0.001583081	0.012759467	Q7YR70	TRINITY_DN314645_c3_g2_i1	2.20E-13	Angio-associated migratory cell protein	angiogenesis [GO:0001525]; cell differentiation [GO:0030154]; positive regulation of endothelial cell migration [GO:0010595]; ribosomal large subunit biogenesis [GO:0042273]; smooth muscle cell migration [GO:0014909]	cell surface [GO:0009986]; cytosol [GO:0005829]; intercellular bridge [GO:0045171]; microtubule cytoskeleton [GO:0015630]; plasma membrane [GO:0005886]	unfolded protein binding [GO:0051082]	GO:0001525; GO:0005829; GO:0005886; GO:0009986; GO:0010595; GO:0014909; GO:0015630; GO:0030154; GO:0042273; GO:0045171; GO:0051082	reviewed	Canis lupus familiaris (Dog) (Canis familiaris)
TRINITY_DN314645_c3_g3	20.81513312	7.061328642	135.9074795	2.22E-10	7.15E-09	Q7YR70	TRINITY_DN314645_c3_g3_i1	1.70E-25	Angio-associated migratory cell protein	angiogenesis [GO:0001525]; cell differentiation [GO:0030154]; positive regulation of endothelial cell migration [GO:0010595]; ribosomal large subunit biogenesis [GO:0042273]; smooth muscle cell migration [GO:0014909]	cell surface [GO:0009986]; cytosol [GO:0005829]; intercellular bridge [GO:0045171]; microtubule cytoskeleton [GO:0015630]; plasma membrane [GO:0005886]	unfolded protein binding [GO:0051082]	GO:0001525; GO:0005829; GO:0005886; GO:0009986; GO:0010595; GO:0014909; GO:0015630; GO:0030154; GO:0042273; GO:0045171; GO:0051082	reviewed	Canis lupus familiaris (Dog) (Canis familiaris)
TRINITY_DN314831_c0_g1	13.25841312	3.126121023	26.55293307	7.92E-05	0.000996528	P38404	TRINITY_DN314831_c0_g1_i1	1.80E-64	Guanine nucleotide-binding protein G(o) subunit alpha	adenylate cyclase-modulating G protein-coupled receptor signaling pathway [GO:0007188]		G-protein beta/gamma-subunit complex binding [GO:0031683]; GTPase activity [GO:0003924]; GTP binding [GO:0005525]; metal ion binding [GO:0046872]	GO:0003924; GO:0005525; GO:0007188; GO:0031683; GO:0046872	reviewed	Locusta migratoria (Migratory locust)
TRINITY_DN314831_c1_g1	21.2431053	10.22185825	271.5357074	3.06E-14	2.96E-12	A8XDJ2	TRINITY_DN314831_c1_g1_i1	1.60E-20	Ubiquitin thioesterase otubain-like (EC 3.4.19.12) (Deubiquitinating enzyme otubain-like) (Ubiquitin-specific-processing protease otubain-like)	protein K48-linked deubiquitination [GO:0071108]	nucleus [GO:0005634]	NEDD8-specific protease activity [GO:0019784]; thiol-dependent ubiquitin-specific protease activity [GO:0004843]; ubiquitin binding [GO:0043130]	GO:0004843; GO:0005634; GO:0019784; GO:0043130; GO:0071108	reviewed	Caenorhabditis briggsae
TRINITY_DN314832_c0_g1	20.38308782	6.884767479	129.4624285	3.40E-10	1.01E-08	A5WVX1	TRINITY_DN314832_c0_g1_i1	4.50E-12	eEF1A lysine and N-terminal methyltransferase (Methyltransferase-like protein 13) [Includes: eEF1A lysine methyltransferase (EC 2.1.1.-); eEF1A N-terminal methyltransferase (EC 2.1.1.-)]	protein methylation [GO:0006479]		methyltransferase activity [GO:0008168]	GO:0006479; GO:0008168	reviewed	Danio rerio (Zebrafish) (Brachydanio rerio)
TRINITY_DN314834_c0_g2	22.44314519	9.209497888	318.4404402	5.55E-15	1.23E-12	Q9XJ54	TRINITY_DN314834_c0_g2_i1	3.10E-20	Nuclear transport factor 2 (NTF-2)	nucleocytoplasmic transport [GO:0006913]; protein transport [GO:0015031]	cytoplasm [GO:0005737]; nuclear pore central transport channel [GO:0044613]		GO:0005737; GO:0006913; GO:0015031; GO:0044613	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN314842_c0_g2	21.93140148	10.55572999	280.7606205	2.14E-14	2.46E-12	Q93Y39	TRINITY_DN314842_c0_g2_i1	2.90E-67	DEAD-box ATP-dependent RNA helicase 13 (EC 3.6.4.13)			ATP binding [GO:0005524]; helicase activity [GO:0004386]; RNA binding [GO:0003723]	GO:0003723; GO:0004386; GO:0005524	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN314848_c0_g1	-4.137018623	10.39833669	29.18569692	1.72E-05	0.000248274	B9N843	TRINITY_DN314848_c0_g1_i1	2.20E-16	"Biotin carboxylase 2, chloroplastic (EC 6.3.4.14) (Acetyl-CoA carboxylase subunit A 2) (ACC) (EC 6.4.1.2)"	fatty acid biosynthetic process [GO:0006633]; malonyl-CoA biosynthetic process [GO:2001295]	chloroplast [GO:0009507]	acetyl-CoA carboxylase activity [GO:0003989]; ATP binding [GO:0005524]; biotin carboxylase activity [GO:0004075]; metal ion binding [GO:0046872]	GO:0003989; GO:0004075; GO:0005524; GO:0006633; GO:0009507; GO:0046872; GO:2001295	reviewed	Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
TRINITY_DN314863_c3_g4	3.123092276	16.88368924	12.73327578	0.00162904	0.013028113	Q6K5Q0	TRINITY_DN314863_c3_g4_i2	4.10E-58	Putative germin-like protein 2-1		apoplast [GO:0048046]; cell wall [GO:0005618]	manganese ion binding [GO:0030145]; nutrient reservoir activity [GO:0045735]	GO:0005618; GO:0030145; GO:0045735; GO:0048046	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN314864_c1_g2	22.14382212	14.58262553	255.7191348	5.79E-14	5.12E-12	P53995	TRINITY_DN314864_c1_g2_i4	9.40E-35	Anaphase-promoting complex subunit 1 (APC1) (Cyclosome subunit 1) (Mitotic checkpoint regulator) (Testis-specific gene 24 protein)	anaphase-promoting complex-dependent catabolic process [GO:0031145]; cell division [GO:0051301]; metaphase/anaphase transition of mitotic cell cycle [GO:0007091]; protein K11-linked ubiquitination [GO:0070979]	anaphase-promoting complex [GO:0005680]; nucleus [GO:0005634]		GO:0005634; GO:0005680; GO:0007091; GO:0031145; GO:0051301; GO:0070979	reviewed	Mus musculus (Mouse)
TRINITY_DN314883_c0_g1	5.166357621	7.267927858	12.30464055	0.001888918	0.014725948	Q93YS4	TRINITY_DN314883_c0_g1_i4	4.80E-86	ABC transporter G family member 22 (ABC transporter ABCG.22) (AtABCG22) (White-brown complex homolog protein 23) (AtWBC23)	response to water deprivation [GO:0009414]; transmembrane transport [GO:0055085]; transpiration [GO:0010148]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]	ATPase activity [GO:0016887]; ATPase-coupled transmembrane transporter activity [GO:0042626]; ATP binding [GO:0005524]	GO:0005524; GO:0005886; GO:0009414; GO:0010148; GO:0016021; GO:0016887; GO:0042626; GO:0055085	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN316210_c2_g1	-8.40147686	6.093301191	28.63090316	1.95E-05	0.000274837	F4JI44	TRINITY_DN316210_c2_g1_i1	4.00E-111	Nodulin homeobox (NDX1 homeobox protein homolog) (AtNDX1)	flower development [GO:0009908]; negative regulation of antisense RNA transcription [GO:0060195]	nucleolus [GO:0005730]; nucleus [GO:0005634]	single-stranded DNA binding [GO:0003697]	GO:0003697; GO:0005634; GO:0005730; GO:0009908; GO:0060195	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN316210_c3_g3	-9.914329286	6.37075356	34.22718359	5.78E-06	9.47E-05	P37706	TRINITY_DN316210_c3_g3_i1	8.90E-83	"Ribosome-recycling factor, chloroplastic (RRF) (Nuclear located protein D2) (Ribosome-releasing factor, chloroplastic) (Fragment)"	translation [GO:0006412]	chloroplast [GO:0009507]		GO:0006412; GO:0009507	reviewed	Daucus carota (Wild carrot)
TRINITY_DN316221_c2_g2	-7.073356501	5.276175021	14.20453649	0.000995066	0.008699801	Q8QHA5	TRINITY_DN316221_c2_g2_i2	1.10E-55	DNA replication ATP-dependent helicase/nuclease DNA2 (DNA replication ATP-dependent helicase-like homolog) [Includes: DNA replication nuclease DNA2 (EC 3.1.-.-); DNA replication ATP-dependent helicase DNA2 (EC 3.6.4.12)]	"base-excision repair [GO:0006284]; DNA double-strand break processing [GO:0000729]; DNA replication [GO:0006260]; DNA replication, Okazaki fragment processing [GO:0033567]; DNA replication, removal of RNA primer [GO:0043137]; DNA replication checkpoint [GO:0000076]; double-strand break repair via single-strand annealing [GO:0045002]; mitochondrial DNA replication [GO:0006264]; positive regulation of DNA replication [GO:0045740]"	mitochondrion [GO:0005739]; nucleus [GO:0005634]	"4 iron, 4 sulfur cluster binding [GO:0051539]; 5'-3' DNA helicase activity [GO:0043139]; 5'-3' exonuclease activity [GO:0008409]; 5'-flap endonuclease activity [GO:0017108]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA helicase activity [GO:0003678]; metal ion binding [GO:0046872]; nuclease activity [GO:0004518]; single-stranded DNA-dependent ATPase activity [GO:0043142]; site-specific endodeoxyribonuclease activity, specific for altered base [GO:0016890]"	GO:0000076; GO:0000729; GO:0003677; GO:0003678; GO:0004518; GO:0005524; GO:0005634; GO:0005739; GO:0006260; GO:0006264; GO:0006284; GO:0008409; GO:0016890; GO:0017108; GO:0033567; GO:0043137; GO:0043139; GO:0043142; GO:0045002; GO:0045740; GO:0046872; GO:0051539	reviewed	Xenopus laevis (African clawed frog)
TRINITY_DN316221_c2_g4	-6.837337584	3.190887039	8.937694332	0.006541981	0.03985715	Q9URU2	TRINITY_DN316221_c2_g4_i2	7.50E-47	DNA replication ATP-dependent helicase/nuclease dna2 [Includes: DNA replication nuclease dna2 (EC 3.1.-.-); DNA replication ATP-dependent helicase dna2 (EC 3.6.4.12)]	DNA repair [GO:0006281]; Okazaki fragment processing involved in mitotic DNA replication [GO:1903461]; removal of RNA primer involved in mitotic DNA replication [GO:1903469]; replication fork processing [GO:0031297]; replication fork reversal [GO:0071932]; response to intra-S DNA damage checkpoint signaling [GO:0072429]; telomeric 3' overhang formation [GO:0031860]	"cytoplasm [GO:0005737]; cytosol [GO:0005829]; nuclear chromosome, telomeric region [GO:0000784]; nuclear replication fork [GO:0043596]; nucleoplasm [GO:0005654]; nucleus [GO:0005634]; replication fork [GO:0005657]; site of double-strand break [GO:0035861]"	"4 iron, 4 sulfur cluster binding [GO:0051539]; 5'-flap endonuclease activity [GO:0017108]; 5' overhang single-stranded DNA endodeoxyribonuclease activity [GO:1990601]; ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; chromatin binding [GO:0003682]; DNA binding [GO:0003677]; metal ion binding [GO:0046872]; nuclease activity [GO:0004518]; protein kinase binding [GO:0019901]; RNA binding [GO:0003723]; single-stranded DNA 5'-3' exodeoxyribonuclease activity [GO:0045145]; single-stranded DNA-dependent ATPase activity [GO:0043142]"	GO:0000784; GO:0003677; GO:0003682; GO:0003723; GO:0004003; GO:0004518; GO:0005524; GO:0005634; GO:0005654; GO:0005657; GO:0005737; GO:0005829; GO:0006281; GO:0017108; GO:0019901; GO:0031297; GO:0031860; GO:0035861; GO:0043142; GO:0043596; GO:0045145; GO:0046872; GO:0051539; GO:0071932; GO:0072429; GO:1903461; GO:1903469; GO:1990601	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN316223_c6_g3	-6.060722346	8.391058939	33.78470983	6.34E-06	0.000101614	Q8S9J6	TRINITY_DN316223_c6_g3_i1	7.10E-80	Aspartyl protease family protein At5g10770 (EC 3.4.23.-)	protein catabolic process [GO:0030163]; proteolysis [GO:0006508]	anchored component of membrane [GO:0031225]; plasma membrane [GO:0005886]	aspartic-type endopeptidase activity [GO:0004190]	GO:0004190; GO:0005886; GO:0006508; GO:0030163; GO:0031225	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN316228_c3_g1	-4.828014239	9.32697481	46.15728852	6.23E-07	1.16E-05	A4QP78	TRINITY_DN316228_c3_g1_i4	7.50E-07	CCR4-NOT transcription complex subunit 11	gene silencing by RNA [GO:0031047]; regulation of translation [GO:0006417]	CCR4-NOT complex [GO:0030014]; cytoplasm [GO:0005737]; nucleus [GO:0005634]		GO:0005634; GO:0005737; GO:0006417; GO:0030014; GO:0031047	reviewed	Danio rerio (Zebrafish) (Brachydanio rerio)
TRINITY_DN316260_c0_g1	21.25532097	7.600556293	164.4945788	4.07E-11	1.45E-09	A2QY22	TRINITY_DN316260_c0_g1_i1	1.80E-77	ATP-dependent DNA helicase chl1 (EC 3.6.4.12) (Chromosome loss protein 1)	cell cycle [GO:0007049]; nucleobase-containing compound metabolic process [GO:0006139]	nucleus [GO:0005634]	ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]	GO:0003677; GO:0004003; GO:0005524; GO:0005634; GO:0006139; GO:0007049	reviewed	Aspergillus niger (strain CBS 513.88 / FGSC A1513)
TRINITY_DN316260_c0_g3	10.74869519	2.188946124	21.51399983	0.000233996	0.00250594	A1D8E4	TRINITY_DN316260_c0_g3_i1	2.90E-43	ATP-dependent DNA helicase chl1 (EC 3.6.4.12) (Chromosome loss protein 1)	cell cycle [GO:0007049]; nucleobase-containing compound metabolic process [GO:0006139]	nucleus [GO:0005634]	ATP binding [GO:0005524]; ATP-dependent DNA helicase activity [GO:0004003]; DNA binding [GO:0003677]	GO:0003677; GO:0004003; GO:0005524; GO:0005634; GO:0006139; GO:0007049	reviewed	Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) (Aspergillus fischerianus)
TRINITY_DN316647_c2_g1	3.105038392	8.301045403	10.24795615	0.003962271	0.026893047	O14134	TRINITY_DN316647_c2_g1_i3	6.60E-36	mRNA export factor elf1	poly(A)+ mRNA export from nucleus [GO:0016973]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; nucleus [GO:0005634]; protein-containing complex [GO:0032991]	ATPase activity [GO:0016887]; ATP binding [GO:0005524]	GO:0005524; GO:0005634; GO:0005737; GO:0005829; GO:0016887; GO:0016973; GO:0032991	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN316649_c0_g1	21.56766389	11.30262471	240.7620011	1.10E-13	8.48E-12	Q5R962	TRINITY_DN316649_c0_g1_i1	1.70E-49	tRNA (guanine(10)-N2)-methyltransferase homolog (EC 2.1.1.-) (tRNA guanosine-2'-O-methyltransferase TRM11 homolog)	tRNA processing [GO:0008033]		methyltransferase activity [GO:0008168]; tRNA binding [GO:0000049]	GO:0000049; GO:0008033; GO:0008168	reviewed	Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii)
TRINITY_DN316900_c0_g1	18.58275894	5.338253349	66.9772872	2.64E-07	5.24E-06	Q03168	TRINITY_DN316900_c0_g1_i1	2.30E-10	Lysosomal aspartic protease (EC 3.4.23.-)		lysosome [GO:0005764]	aspartic-type endopeptidase activity [GO:0004190]	GO:0004190; GO:0005764	reviewed	Aedes aegypti (Yellowfever mosquito) (Culex aegypti)
TRINITY_DN316900_c0_g2	17.43393815	4.765214533	55.69294988	9.17E-07	1.67E-05	P42210	TRINITY_DN316900_c0_g2_i3	4.00E-23	Phytepsin (EC 3.4.23.40) (Aspartic proteinase) [Cleaved into: Phytepsin 32 kDa subunit; Phytepsin 29 kDa subunit; Phytepsin 16 kDa subunit; Phytepsin 11 kDa subunit]	lipid metabolic process [GO:0006629]	vacuole [GO:0005773]	aspartic-type endopeptidase activity [GO:0004190]	GO:0004190; GO:0005773; GO:0006629	reviewed	Hordeum vulgare (Barley)
TRINITY_DN316900_c0_g3	20.80573717	7.17291488	134.107347	2.49E-10	7.77E-09	Q03168	TRINITY_DN316900_c0_g3_i1	4.10E-23	Lysosomal aspartic protease (EC 3.4.23.-)		lysosome [GO:0005764]	aspartic-type endopeptidase activity [GO:0004190]	GO:0004190; GO:0005764	reviewed	Aedes aegypti (Yellowfever mosquito) (Culex aegypti)
TRINITY_DN316904_c8_g6	6.457021172	1.570434273	8.686938843	0.00795486	0.046717821	P49632	TRINITY_DN316904_c8_g6_i1	2.10E-36	Ubiquitin-60S ribosomal protein L40 (CEP52) [Cleaved into: Ubiquitin; 60S ribosomal protein L40]	modification-dependent protein catabolic process [GO:0019941]; polarity specification of anterior/posterior axis [GO:0009949]; protein ubiquitination [GO:0016567]; translation [GO:0006412]	cytoplasm [GO:0005737]; nucleus [GO:0005634]; ribosome [GO:0005840]	protein tag [GO:0031386]; structural constituent of ribosome [GO:0003735]; ubiquitin protein ligase binding [GO:0031625]	GO:0003735; GO:0005634; GO:0005737; GO:0005840; GO:0006412; GO:0009949; GO:0016567; GO:0019941; GO:0031386; GO:0031625	reviewed	Caenorhabditis elegans
TRINITY_DN316932_c1_g1	-3.346202502	9.89515534	20.68048583	0.000143329	0.001686701	F4JKH6	TRINITY_DN316932_c1_g1_i3	1.60E-24	Protein TSS (TPR-domain suppressor of STIMPY)	cell cycle [GO:0007049]; multicellular organism development [GO:0007275]; response to abscisic acid [GO:0009737]	cytoplasm [GO:0005737]		GO:0005737; GO:0007049; GO:0007275; GO:0009737	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN316936_c5_g1	-3.938195591	6.050231635	9.874632577	0.004559319	0.029959855	Q9Y3A4	TRINITY_DN316936_c5_g1_i1	7.40E-09	Ribosomal RNA-processing protein 7 homolog A (Gastric cancer antigen Zg14)	blastocyst formation [GO:0001825]; ribosomal small subunit assembly [GO:0000028]; rRNA processing [GO:0006364]	CURI complex [GO:0032545]; cytoplasm [GO:0005737]; nucleoplasm [GO:0005654]; UTP-C complex [GO:0034456]	RNA binding [GO:0003723]	GO:0000028; GO:0001825; GO:0003723; GO:0005654; GO:0005737; GO:0006364; GO:0032545; GO:0034456	reviewed	Homo sapiens (Human)
TRINITY_DN316951_c1_g2	21.70589232	9.761771239	368.7151221	1.14E-15	7.04E-13	Q8L9C4	TRINITY_DN316951_c1_g2_i1	1.40E-40	Very-long-chain 3-oxoacyl-CoA reductase 1 (EC 1.1.1.330) (Beta-ketoacyl reductase 1) (AtKCR1) (Protein GLOSSY 8) (gl8At)	embryo development ending in seed dormancy [GO:0009793]; very long-chain fatty acid biosynthetic process [GO:0042761]	endoplasmic reticulum [GO:0005783]; endoplasmic reticulum membrane [GO:0005789]; integral component of membrane [GO:0016021]; membrane [GO:0016020]	3-oxo-arachidoyl-CoA reductase activity [GO:0102339]; 3-oxo-behenoyl-CoA reductase activity [GO:0102340]; 3-oxo-cerotoyl-CoA reductase activity [GO:0102342]; 3-oxo-lignoceroyl-CoA reductase activity [GO:0102341]; acetoacetyl-CoA reductase activity [GO:0018454]; ketoreductase activity [GO:0045703]	GO:0005783; GO:0005789; GO:0009793; GO:0016020; GO:0016021; GO:0018454; GO:0042761; GO:0045703; GO:0102339; GO:0102340; GO:0102341; GO:0102342	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN316973_c2_g1	6.047505775	8.014335264	13.3021341	0.001342712	0.011134527	O49255	TRINITY_DN316973_c2_g1_i1	3.00E-09	"NAC transcription factor 29 (AtNAC029) (Protein NAC-LIKE, ACTIVATED BY AP3/PI) (AtNAP)"	embryo development ending in seed dormancy [GO:0009793]; flower development [GO:0009908]; fruit ripening [GO:0009835]; leaf senescence [GO:0010150]; multidimensional cell growth [GO:0009825]	nucleus [GO:0005634]	DNA binding [GO:0003677]; DNA-binding transcription factor activity [GO:0003700]	GO:0003677; GO:0003700; GO:0005634; GO:0009793; GO:0009825; GO:0009835; GO:0009908; GO:0010150	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN316974_c2_g2	-6.391007298	14.871055	30.78243842	1.20E-05	0.000181831	O22433	TRINITY_DN316974_c2_g2_i3	7.00E-06	Metallothionein-like protein 3 (MT-3)	cellular copper ion homeostasis [GO:0006878]	cell [GO:0005623]	copper ion binding [GO:0005507]; zinc ion binding [GO:0008270]	GO:0005507; GO:0005623; GO:0006878; GO:0008270	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN316991_c4_g1	7.11525691	12.35259568	111.7079963	2.62E-10	8.03E-09	Q9C5D0	TRINITY_DN316991_c4_g1_i2	6.00E-06	"CBS domain-containing protein CBSX2, chloroplastic (CBS domain-containing protein 1) (AtCDCP1) (Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1) (AtLEJ1)"	cell redox homeostasis [GO:0045454]	chloroplast [GO:0009507]; chloroplast stroma [GO:0009570]		GO:0009507; GO:0009570; GO:0045454	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN316993_c2_g1	5.228413346	6.135912692	13.03291987	0.001470693	0.011946968	C6A4R7	TRINITY_DN316993_c2_g1_i7	3.10E-16	Elongation factor 1-alpha (EF-1-alpha) (Elongation factor Tu) (EF-Tu)		cytoplasm [GO:0005737]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]; translation elongation factor activity [GO:0003746]	GO:0003746; GO:0003924; GO:0005525; GO:0005737	reviewed	Thermococcus sibiricus (strain MM 739 / DSM 12597)
TRINITY_DN317243_c9_g4	5.452104936	9.109413098	57.49482338	1.05E-07	2.25E-06	P11369	TRINITY_DN317243_c9_g4_i3	4.50E-36	LINE-1 retrotransposable element ORF2 protein (ORF2p) (Long interspersed element-1) (L1) (Retrovirus-related Pol polyprotein LINE-1) [Includes: Reverse transcriptase (EC 2.7.7.49); Endonuclease (EC 3.1.21.-)]	DNA recombination [GO:0006310]		endonuclease activity [GO:0004519]; metal ion binding [GO:0046872]; RNA-directed DNA polymerase activity [GO:0003964]	GO:0003964; GO:0004519; GO:0006310; GO:0046872	reviewed	Mus musculus (Mouse)
TRINITY_DN317261_c4_g1	3.097422452	10.81623061	13.49391429	0.001258986	0.010588482	Q9LIE6	TRINITY_DN317261_c4_g1_i1	7.60E-06	VQ motif-containing protein 22 (AtVQ22)		nucleus [GO:0005634]		GO:0005634	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN317261_c5_g1	4.181349009	10.52686712	28.93715028	1.82E-05	0.000258574	Q7LHG5	TRINITY_DN317261_c5_g1_i1	2.50E-37	Transposon Ty3-I Gag-Pol polyprotein (Gag3-Pol3) (Transposon Ty3-2 TYA-TYB polyprotein) [Cleaved into: Capsid protein (CA) (p24); Spacer peptide p3; Nucleocapsid protein p11 (NC); Ty3 protease (PR) (EC 3.4.23.-) (p16); Spacer peptide J; Reverse transcriptase/ribonuclease H (RT) (RT-RH) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) (p55); Integrase p52 (IN); Integrase p49 (IN)]	"DNA integration [GO:0015074]; DNA recombination [GO:0006310]; transposition, RNA-mediated [GO:0032197]"	cytoplasm [GO:0005737]; nucleus [GO:0005634]; retrotransposon nucleocapsid [GO:0000943]	aspartic-type endopeptidase activity [GO:0004190]; ATP binding [GO:0005524]; DNA binding [GO:0003677]; DNA-directed DNA polymerase activity [GO:0003887]; peptidase activity [GO:0008233]; ribonuclease activity [GO:0004540]; RNA binding [GO:0003723]; RNA-directed DNA polymerase activity [GO:0003964]; RNA-DNA hybrid ribonuclease activity [GO:0004523]; zinc ion binding [GO:0008270]	GO:0000943; GO:0003677; GO:0003723; GO:0003887; GO:0003964; GO:0004190; GO:0004523; GO:0004540; GO:0005524; GO:0005634; GO:0005737; GO:0006310; GO:0008233; GO:0008270; GO:0015074; GO:0032197	reviewed	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TRINITY_DN317263_c4_g2	-3.280375545	8.603042114	17.09043572	0.000402138	0.004001979	P14381	TRINITY_DN317263_c4_g2_i2	1.40E-27	Transposon TX1 uncharacterized 149 kDa protein (ORF 2)					reviewed	Xenopus laevis (African clawed frog)
TRINITY_DN318563_c0_g1	19.75565481	8.762746885	200.869713	7.30E-13	4.03E-11	Q9C9S4	TRINITY_DN318563_c0_g1_i1	3.20E-33	Trehalose-phosphate phosphatase B (AtTPPB) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase)	trehalose biosynthetic process [GO:0005992]		trehalose-phosphatase activity [GO:0004805]	GO:0004805; GO:0005992	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN34409_c0_g1	8.366127586	1.728598175	9.739714151	0.006209414	0.038283141	Q176V0	TRINITY_DN34409_c0_g1_i1	3.60E-21	Ubiquitin-fold modifier 1	protein ufmylation [GO:0071569]			GO:0071569	reviewed	Aedes aegypti (Yellowfever mosquito) (Culex aegypti)
TRINITY_DN3463_c0_g1	7.879293497	1.616840789	12.01382457	0.002946557	0.021559322	Q5ZJF4	TRINITY_DN3463_c0_g1_i1	6.00E-59	Peroxiredoxin-6 (EC 1.11.1.15) (1-Cys peroxiredoxin) (1-Cys PRX) (Acidic calcium-independent phospholipase A2) (aiPLA2) (EC 3.1.1.4) (Non-selenium glutathione peroxidase) (NSGPx)	cell redox homeostasis [GO:0045454]; cellular response to oxidative stress [GO:0034599]; hydrogen peroxide catabolic process [GO:0042744]; lipid catabolic process [GO:0016042]	cytosol [GO:0005829]; extracellular space [GO:0005615]; lysosome [GO:0005764]	"peroxidase activity [GO:0004601]; peroxiredoxin activity [GO:0051920]; phospholipase A2 activity [GO:0004623]; phospholipase A2 activity (consuming 1,2-dipalmitoylphosphatidylcholine) [GO:0102567]; phospholipase A2 activity consuming 1,2-dioleoylphosphatidylethanolamine) [GO:0102568]"	GO:0004601; GO:0004623; GO:0005615; GO:0005764; GO:0005829; GO:0016042; GO:0034599; GO:0042744; GO:0045454; GO:0051920; GO:0102567; GO:0102568	reviewed	Gallus gallus (Chicken)
TRINITY_DN3495_c0_g1	19.96004724	5.968708834	89.89693182	3.30E-08	8.12E-07	P17609	TRINITY_DN3495_c0_g1_i1	2.90E-23	GTP-binding protein ypt2 (SEC4 homolog)	exocytosis [GO:0006887]; Golgi to plasma membrane transport [GO:0006893]; intracellular protein transport [GO:0006886]; protein localization to plasma membrane [GO:0072659]; protein secretion [GO:0009306]; Rab protein signal transduction [GO:0032482]; regulation of exocytosis [GO:0017157]; signaling [GO:0023052]; vesicle docking involved in exocytosis [GO:0006904]; vesicle fusion [GO:0006906]	cytosol [GO:0005829]; endosome [GO:0005768]; meiotic spindle pole body [GO:0035974]; nucleus [GO:0005634]; plasma membrane [GO:0005886]; prospore membrane [GO:0005628]	GTPase activity [GO:0003924]; GTP binding [GO:0005525]	GO:0003924; GO:0005525; GO:0005628; GO:0005634; GO:0005768; GO:0005829; GO:0005886; GO:0006886; GO:0006887; GO:0006893; GO:0006904; GO:0006906; GO:0009306; GO:0017157; GO:0023052; GO:0032482; GO:0035974; GO:0072659	reviewed	Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
TRINITY_DN371660_c0_g1	6.035179525	1.31817049	9.673952649	0.006351635	0.038927346	Q852L0	TRINITY_DN371660_c0_g1_i1	1.10E-10	Casein kinase 1-like protein HD16 (EC 2.7.11.1) (Os03g0793500 protein) (Protein EARLY FLOWERING 1) (Protein HEADING DATE 16)	"endocytosis [GO:0006897]; flower development [GO:0009908]; gibberellic acid mediated signaling pathway [GO:0009740]; gibberellin mediated signaling pathway [GO:0010476]; peptidyl-serine phosphorylation [GO:0018105]; peptidyl-threonine phosphorylation [GO:0018107]; regulation of growth [GO:0040008]; regulation of long-day photoperiodism, flowering [GO:0048586]"	cytoplasm [GO:0005737]; nucleus [GO:0005634]	ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005524; GO:0005634; GO:0005737; GO:0006897; GO:0009740; GO:0009908; GO:0010476; GO:0018105; GO:0018107; GO:0040008; GO:0048586	reviewed	Oryza sativa subsp. japonica (Rice)
TRINITY_DN38592_c0_g1	-8.956349701	3.120118107	14.66269355	0.000857328	0.007691102	Q9FZ45	TRINITY_DN38592_c0_g1_i1	1.20E-176	Uncharacterized membrane protein At1g16860	negative regulation of cellulose biosynthetic process [GO:2001007]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]		GO:0005886; GO:0016021; GO:2001007	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN45784_c0_g1	10.00740373	2.09990886	17.71733663	0.000587628	0.005544845	Q54JM9	TRINITY_DN45784_c0_g1_i1	9.50E-34	Nitrilase homolog 2 (EC 3.5.-.-)	asparagine metabolic process [GO:0006528]; glutamine metabolic process [GO:0006541]; oxaloacetate metabolic process [GO:0006107]		omega-amidase activity [GO:0050152]	GO:0006107; GO:0006528; GO:0006541; GO:0050152	reviewed	Dictyostelium discoideum (Slime mold)
TRINITY_DN46127_c0_g1	8.142746027	1.662892523	9.692981019	0.006310108	0.038749573	A2VDN6	TRINITY_DN46127_c0_g1_i1	1.00E-15	Splicing factor 3A subunit 1	"mRNA splicing, via spliceosome [GO:0000398]; U2-type prespliceosome assembly [GO:1903241]"	catalytic step 2 spliceosome [GO:0071013]; nuclear speck [GO:0016607]; nucleus [GO:0005634]; U2 snRNP [GO:0005686]; U2-type precatalytic spliceosome [GO:0071005]; U2-type prespliceosome [GO:0071004]; U2-type spliceosomal complex [GO:0005684]	RNA binding [GO:0003723]	GO:0000398; GO:0003723; GO:0005634; GO:0005684; GO:0005686; GO:0016607; GO:0071004; GO:0071005; GO:0071013; GO:1903241	reviewed	Bos taurus (Bovine)
TRINITY_DN4638_c0_g1	10.83918805	2.180693104	19.20758414	0.000404387	0.004011464	Q9SAB1	TRINITY_DN4638_c0_g1_i1	9.90E-89	Heat shock 70 kDa protein 16 (Heat shock protein 70-16) (AtHsp70-16)		cytosol [GO:0005829]; nucleus [GO:0005634]	ATP binding [GO:0005524]	GO:0005524; GO:0005634; GO:0005829	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN524499_c0_g1	-6.858346492	5.149981617	14.38456429	0.000938253	0.008320612	Q9M5L0	TRINITY_DN524499_c0_g1_i1	6.00E-50	60S ribosomal protein L35	translation [GO:0006412]	ribosome [GO:0005840]	structural constituent of ribosome [GO:0003735]	GO:0003735; GO:0005840; GO:0006412	reviewed	Euphorbia esula (Leafy spurge)
TRINITY_DN544815_c0_g1	8.578139146	1.670195327	12.5306986	0.002510681	0.018876486	O14735	TRINITY_DN544815_c0_g1_i1	6.10E-28	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (EC 2.7.8.11) (Phosphatidylinositol synthase) (PI synthase) (PtdIns synthase)	CDP-diacylglycerol metabolic process [GO:0046341]; phosphatidylinositol biosynthetic process [GO:0006661]	endoplasmic reticulum membrane [GO:0005789]; Golgi apparatus [GO:0005794]; Golgi membrane [GO:0000139]; integral component of membrane [GO:0016021]; membrane [GO:0016020]; plasma membrane [GO:0005886]	alcohol binding [GO:0043178]; carbohydrate binding [GO:0030246]; CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity [GO:0003881]; diacylglycerol binding [GO:0019992]; manganese ion binding [GO:0030145]	GO:0000139; GO:0003881; GO:0005789; GO:0005794; GO:0005886; GO:0006661; GO:0016020; GO:0016021; GO:0019992; GO:0030145; GO:0030246; GO:0043178; GO:0046341	reviewed	Homo sapiens (Human)
TRINITY_DN546034_c0_g1	-8.772397386	1.855566117	8.660163724	0.008689298	0.049802553	Q940B0	TRINITY_DN546034_c0_g1_i1	5.40E-58	60S ribosomal protein L18-3	translation [GO:0006412]	cytosol [GO:0005829]; cytosolic large ribosomal subunit [GO:0022625]; cytosolic ribosome [GO:0022626]; membrane [GO:0016020]; plasmodesma [GO:0009506]; vacuole [GO:0005773]	mRNA binding [GO:0003729]; structural constituent of ribosome [GO:0003735]	GO:0003729; GO:0003735; GO:0005773; GO:0005829; GO:0006412; GO:0009506; GO:0016020; GO:0022625; GO:0022626	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN553854_c0_g1	-8.200636149	1.768925496	10.67870651	0.004266451	0.028397134	Q9LJD8	TRINITY_DN553854_c0_g1_i1	1.40E-21	MAP3K epsilon protein kinase 1 (AtM3KE1) (EC 2.7.11.1) (Mitogen-activated protein kinase kinase kinase 7)	activation of protein kinase activity [GO:0032147]; cell cycle [GO:0007049]; cell division [GO:0051301]; protein autophosphorylation [GO:0046777]; regulation of cell division [GO:0051302]; regulation of embryonic development [GO:0045995]; regulation of extent of cell growth [GO:0061387]; regulation of unidimensional cell growth [GO:0051510]; signal transduction by protein phosphorylation [GO:0023014]; stress-activated protein kinase signaling cascade [GO:0031098]	cytoplasm [GO:0005737]; cytosol [GO:0005829]; microtubule organizing center [GO:0005815]; nucleolus [GO:0005730]; plasma membrane [GO:0005886]	ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674]	GO:0004674; GO:0005524; GO:0005730; GO:0005737; GO:0005815; GO:0005829; GO:0005886; GO:0007049; GO:0023014; GO:0031098; GO:0032147; GO:0045995; GO:0046777; GO:0051301; GO:0051302; GO:0051510; GO:0061387	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN6259_c0_g1	8.639136502	1.821994175	11.76394357	0.003187365	0.022835402	Q5L8L7	TRINITY_DN6259_c0_g1_i2	4.70E-59	ATP-dependent Clp protease ATP-binding subunit ClpX	protein folding [GO:0006457]		ATP binding [GO:0005524]; protein dimerization activity [GO:0046983]; unfolded protein binding [GO:0051082]; zinc ion binding [GO:0008270]	GO:0005524; GO:0006457; GO:0008270; GO:0046983; GO:0051082	reviewed	Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)
TRINITY_DN6371_c0_g1	-8.214304451	1.711110434	11.85609213	0.002893731	0.021324044	Q7XZF5	TRINITY_DN6371_c0_g1_i1	2.50E-38	Protein RST1 (Protein RESURRECTION 1)	alkane biosynthetic process [GO:0043447]; cuticle hydrocarbon biosynthetic process [GO:0006723]; defense response [GO:0006952]; embryo development ending in seed dormancy [GO:0009793]; lipid metabolic process [GO:0006629]; seed development [GO:0048316]	integral component of membrane [GO:0016021]; plasma membrane [GO:0005886]		GO:0005886; GO:0006629; GO:0006723; GO:0006952; GO:0009793; GO:0016021; GO:0043447; GO:0048316	reviewed	Arabidopsis thaliana (Mouse-ear cress)
TRINITY_DN643084_c0_g1	-8.226620943	1.76454376	11.7000196	0.003043433	0.021956702	Q5ZKD5	TRINITY_DN643084_c0_g1_i1	1.10E-30	RRP12-like protein		integral component of membrane [GO:0016021]; nuclear membrane [GO:0031965]; nucleolus [GO:0005730]		GO:0005730; GO:0016021; GO:0031965	reviewed	Gallus gallus (Chicken)
TRINITY_DN680_c0_g1	7.799060552	1.545758051	11.96325853	0.002993585	0.021851762	A5V5P9	TRINITY_DN680_c0_g1_i2	2.00E-48	Chaperone protein DnaK (HSP70) (Heat shock 70 kDa protein) (Heat shock protein 70)	protein folding [GO:0006457]		ATP binding [GO:0005524]; unfolded protein binding [GO:0051082]	GO:0005524; GO:0006457; GO:0051082	reviewed	Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)