zr2096_9_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 14083414 lines in total Total number of methylation call strings processed: 28166828 Final Cytosine Methylation Report ================================= Total number of C's analysed: 255572824 Total methylated C's in CpG context: 26756008 Total methylated C's in CHG context: 1647018 Total methylated C's in CHH context: 7002283 Total C to T conversions in CpG context: 8438242 Total C to T conversions in CHG context: 54139076 Total C to T conversions in CHH context: 157590197 C methylated in CpG context: 76.0% C methylated in CHG context: 3.0% C methylated in CHH context: 4.3%