CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 273713 113394 70.71 387107 2 297809 104558 74.01 402367 3 268668 101734 72.53 370402 4 254522 95845 72.64 350367 5 262143 95334 73.33 357477 6 258477 90029 74.17 348506 7 270023 100341 72.91 370364 8 265905 91514 74.40 357419 9 266937 88725 75.05 355662 10 280517 91385 75.43 371902 11 286289 92333 75.61 378622 12 282761 88203 76.22 370964 13 285294 88907 76.24 374201 14 283193 88541 76.18 371734 15 286241 87497 76.59 373738 16 290334 87511 76.84 377845 17 289044 88995 76.46 378039 18 290193 86684 77.00 376877 19 293450 87315 77.07 380765 20 295481 87527 77.15 383008 21 296609 85430 77.64 382039 22 296459 86822 77.35 383281 23 297358 86540 77.46 383898 24 298324 84961 77.83 383285 25 300462 86981 77.55 387443 26 300445 86979 77.55 387424 27 296114 84498 77.80 380612 28 302888 86427 77.80 389315 29 299974 85454 77.83 385428 30 297456 83840 78.01 381296 31 302036 85469 77.94 387505 32 303152 84605 78.18 387757 33 302034 83459 78.35 385493 34 303786 85154 78.11 388940 35 300615 84038 78.15 384653 36 298343 82900 78.26 381243 37 298615 83493 78.15 382108 38 297732 83504 78.10 381236 39 296991 82209 78.32 379200 40 298885 82978 78.27 381863 41 291924 82019 78.07 373943 42 287136 79939 78.22 367075 43 288178 80055 78.26 368233 44 286638 79944 78.19 366582 45 282501 79101 78.12 361602 46 281609 80497 77.77 362106 47 280707 79620 77.90 360327 48 275377 78599 77.80 353976 49 273488 79137 77.56 352625 50 269450 77636 77.63 347086 51 264778 76079 77.68 340857 52 263183 76619 77.45 339802 53 259274 75469 77.45 334743 54 257622 75282 77.39 332904 55 256699 75504 77.27 332203 56 253372 75129 77.13 328501 57 250561 73891 77.23 324452 58 245595 73810 76.89 319405 59 243600 73088 76.92 316688 60 237881 71948 76.78 309829 61 236167 72415 76.53 308582 62 231000 70552 76.60 301552 63 225704 69312 76.51 295016 64 223780 69088 76.41 292868 65 218520 68555 76.12 287075 66 214267 66588 76.29 280855 67 212425 66491 76.16 278916 68 208481 66099 75.93 274580 69 203977 64141 76.08 268118 70 201674 65350 75.53 267024 71 198385 63806 75.66 262191 72 192807 62839 75.42 255646 73 188232 62521 75.07 250753 74 184833 61927 74.90 246760 75 177924 60563 74.61 238487 76 172612 59635 74.32 232247 77 164165 58246 73.81 222411 78 149197 53430 73.63 202627 79 117058 42846 73.21 159904 80 50423 18520 73.14 68943 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 61279 550831 10.01 612110 2 35595 553902 6.04 589497 3 29315 556983 5.00 586298 4 22620 548549 3.96 571169 5 25353 544878 4.45 570231 6 26954 543231 4.73 570185 7 20877 550595 3.65 571472 8 21430 561741 3.67 583171 9 20549 556221 3.56 576770 10 20514 553525 3.57 574039 11 19851 547433 3.50 567284 12 18958 561909 3.26 580867 13 18874 553019 3.30 571893 14 18496 552996 3.24 571492 15 18162 574197 3.07 592359 16 17591 575145 2.97 592736 17 17929 571280 3.04 589209 18 17608 588922 2.90 606530 19 17007 580902 2.84 597909 20 17150 577634 2.88 594784 21 17329 589510 2.86 606839 22 16925 578099 2.84 595024 23 16563 584300 2.76 600863 24 16460 596170 2.69 612630 25 16032 592656 2.63 608688 26 16389 587971 2.71 604360 27 15946 602564 2.58 618510 28 15697 595950 2.57 611647 29 15942 602415 2.58 618357 30 15183 596869 2.48 612052 31 15126 598512 2.46 613638 32 14989 596133 2.45 611122 33 15062 605060 2.43 620122 34 14575 592690 2.40 607265 35 14797 591751 2.44 606548 36 14665 593898 2.41 608563 37 14371 585619 2.40 599990 38 14353 581653 2.41 596006 39 13777 590005 2.28 603782 40 13581 579863 2.29 593444 41 13913 575719 2.36 589632 42 13252 579490 2.24 592742 43 13319 570588 2.28 583907 44 13434 559937 2.34 573371 45 13159 566785 2.27 579944 46 12904 555700 2.27 568604 47 13132 551893 2.32 565025 48 12814 548667 2.28 561481 49 12543 539354 2.27 551897 50 13839 527488 2.56 541327 51 12644 533672 2.31 546316 52 12623 522018 2.36 534641 53 12354 515223 2.34 527577 54 11661 515078 2.21 526739 55 11707 507120 2.26 518827 56 11725 499719 2.29 511444 57 11508 503423 2.23 514931 58 11214 489091 2.24 500305 59 11307 482896 2.29 494203 60 11094 481503 2.25 492597 61 11035 468497 2.30 479532 62 11100 462712 2.34 473812 63 10870 460277 2.31 471147 64 10569 447498 2.31 458067 65 10609 440601 2.35 451210 66 10506 436574 2.35 447080 67 10209 428629 2.33 438838 68 10215 418793 2.38 429008 69 10072 415169 2.37 425241 70 9839 406681 2.36 416520 71 9997 399702 2.44 409699 72 9724 394709 2.40 404433 73 9677 385802 2.45 395479 74 9619 379953 2.47 389572 75 9484 375818 2.46 385302 76 9485 360635 2.56 370120 77 9459 341423 2.70 350882 78 8971 314550 2.77 323521 79 7087 245443 2.81 252530 80 3138 105396 2.89 108534 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 161149 1683430 8.74 1844579 2 149412 1675876 8.19 1825288 3 129162 1695496 7.08 1824658 4 116456 1673831 6.50 1790287 5 118009 1664899 6.62 1782908 6 119560 1576472 7.05 1696032 7 104974 1587558 6.20 1692532 8 102647 1561696 6.17 1664343 9 106867 1581006 6.33 1687873 10 106447 1608266 6.21 1714713 11 102655 1571434 6.13 1674089 12 102484 1581321 6.09 1683805 13 103152 1617020 6.00 1720172 14 99577 1615496 5.81 1715073 15 100819 1643361 5.78 1744180 16 99540 1669168 5.63 1768708 17 97156 1652297 5.55 1749453 18 97639 1666184 5.54 1763823 19 98223 1683978 5.51 1782201 20 95341 1668301 5.41 1763642 21 96866 1675277 5.47 1772143 22 95151 1679599 5.36 1774750 23 90723 1685998 5.11 1776721 24 90722 1697799 5.07 1788521 25 90421 1712355 5.02 1802776 26 86413 1701564 4.83 1787977 27 87643 1701391 4.90 1789034 28 85588 1715299 4.75 1800887 29 83962 1692018 4.73 1775980 30 82717 1696151 4.65 1778868 31 82213 1732274 4.53 1814487 32 78676 1691704 4.44 1770380 33 77435 1690150 4.38 1767585 34 75926 1701675 4.27 1777601 35 74169 1687849 4.21 1762018 36 73020 1683552 4.16 1756572 37 71870 1688336 4.08 1760206 38 69193 1668132 3.98 1737325 39 68678 1664332 3.96 1733010 40 67098 1670802 3.86 1737900 41 65124 1653284 3.79 1718408 42 63929 1633531 3.77 1697460 43 61680 1637815 3.63 1699495 44 60312 1609054 3.61 1669366 45 58606 1593639 3.55 1652245 46 57526 1598816 3.47 1656342 47 56067 1576879 3.43 1632946 48 54781 1569914 3.37 1624695 49 53670 1568380 3.31 1622050 50 55353 1511081 3.53 1566434 51 51030 1505864 3.28 1556894 52 50592 1508154 3.25 1558746 53 47855 1463660 3.17 1511515 54 46352 1448004 3.10 1494356 55 45787 1440393 3.08 1486180 56 44113 1420258 3.01 1464371 57 43440 1412511 2.98 1455951 58 41922 1391751 2.92 1433673 59 41254 1381046 2.90 1422300 60 40511 1353909 2.91 1394420 61 39668 1333943 2.89 1373611 62 38362 1313856 2.84 1352218 63 37749 1298195 2.83 1335944 64 36854 1295448 2.77 1332302 65 35918 1262091 2.77 1298009 66 35062 1239006 2.75 1274068 67 34934 1230818 2.76 1265752 68 34272 1222837 2.73 1257109 69 34302 1198855 2.78 1233157 70 32777 1176160 2.71 1208937 71 32592 1152484 2.75 1185076 72 32371 1138254 2.77 1170625 73 32024 1109368 2.81 1141392 74 31457 1083722 2.82 1115179 75 31838 1061157 2.91 1092995 76 31546 1034856 2.96 1066402 77 30451 984116 3.00 1014567 78 28466 900887 3.06 929353 79 22714 712257 3.09 734971 80 9147 296722 2.99 305869 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 181253 88222 67.26 269475 2 167915 70277 70.50 238192 3 152503 65176 70.06 217679 4 131557 58978 69.05 190535 5 129713 56803 69.55 186516 6 127288 52058 70.97 179346 7 130660 59225 68.81 189885 8 125614 49662 71.67 175276 9 123444 47418 72.25 170862 10 126132 47912 72.47 174044 11 125612 47467 72.57 173079 12 121127 45273 72.79 166400 13 120989 43417 73.59 164406 14 118202 43480 73.11 161682 15 118924 42155 73.83 161079 16 116055 40879 73.95 156934 17 113169 40741 73.53 153910 18 109111 38435 73.95 147546 19 108026 37403 74.28 145429 20 106003 37182 74.03 143185 21 104029 35543 74.53 139572 22 101901 34405 74.76 136306 23 99964 34282 74.46 134246 24 99308 32775 75.19 132083 25 98228 32724 75.01 130952 26 95077 31941 74.85 127018 27 92367 30564 75.14 122931 28 92690 29968 75.57 122658 29 89561 29178 75.43 118739 30 87452 27718 75.93 115170 31 88361 28223 75.79 116584 32 85918 27103 76.02 113021 33 84616 26327 76.27 110943 34 84211 26238 76.24 110449 35 80855 25053 76.34 105908 36 78330 24192 76.40 102522 37 77411 23469 76.74 100880 38 75740 23235 76.52 98975 39 74961 22210 77.14 97171 40 74598 22414 76.90 97012 41 70889 21357 76.85 92246 42 68628 20311 77.16 88939 43 67529 19745 77.38 87274 44 65957 19649 77.05 85606 45 64599 18763 77.49 83362 46 63053 18651 77.17 81704 47 62039 18548 76.98 80587 48 59758 17467 77.38 77225 49 58187 17408 76.97 75595 50 57274 16735 77.39 74009 51 54719 16305 77.04 71024 52 52684 15730 77.01 68414 53 51976 15497 77.03 67473 54 50825 15244 76.93 66069 55 50375 15023 77.03 65398 56 48512 14804 76.62 63316 57 48319 14587 76.81 62906 58 45725 14416 76.03 60141 59 44652 13612 76.64 58264 60 42932 13344 76.29 56276 61 42015 12945 76.45 54960 62 40626 12700 76.18 53326 63 39958 12287 76.48 52245 64 38424 11926 76.31 50350 65 36758 11622 75.98 48380 66 35926 11381 75.94 47307 67 35163 11070 76.06 46233 68 33800 10923 75.58 44723 69 33018 10672 75.57 43690 70 32434 10674 75.24 43108 71 31303 10446 74.98 41749 72 29822 10254 74.41 40076 73 29275 9682 75.15 38957 74 27989 9742 74.18 37731 75 26668 9124 74.51 35792 76 25772 8853 74.43 34625 77 24193 8646 73.67 32839 78 22405 7971 73.76 30376 79 19384 7067 73.28 26451 80 13092 4933 72.63 18025 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 45340 410116 9.95 455456 2 20891 348087 5.66 368978 3 19533 330718 5.58 350251 4 13112 311119 4.04 324231 5 14759 290274 4.84 305033 6 17054 280962 5.72 298016 7 11146 279632 3.83 290778 8 11729 286033 3.94 297762 9 10279 267561 3.70 277840 10 10310 260840 3.80 271150 11 9950 257294 3.72 267244 12 9066 259229 3.38 268295 13 8963 249007 3.47 257970 14 8256 243816 3.28 252072 15 8317 248372 3.24 256689 16 8037 241920 3.22 249957 17 7773 232933 3.23 240706 18 7575 233279 3.15 240854 19 7154 223991 3.10 231145 20 6693 219476 2.96 226169 21 6558 219562 2.90 226120 22 6421 210014 2.97 216435 23 6176 209804 2.86 215980 24 6064 207862 2.83 213926 25 5709 200317 2.77 206026 26 5507 195166 2.74 200673 27 5258 198484 2.58 203742 28 5117 190292 2.62 195409 29 5249 191714 2.66 196963 30 4594 183729 2.44 188323 31 4532 181719 2.43 186251 32 4359 178060 2.39 182419 33 4261 177841 2.34 182102 34 3984 168060 2.32 172044 35 4096 166863 2.40 170959 36 3848 164088 2.29 167936 37 3701 156958 2.30 160659 38 3691 155924 2.31 159615 39 3475 154744 2.20 158219 40 3375 148885 2.22 152260 41 3334 147318 2.21 150652 42 3115 144209 2.11 147324 43 3008 139145 2.12 142153 44 2919 134308 2.13 137227 45 2941 134247 2.14 137188 46 2852 129200 2.16 132052 47 2811 127086 2.16 129897 48 2650 122459 2.12 125109 49 2564 119272 2.10 121836 50 2506 115796 2.12 118302 51 2493 114960 2.12 117453 52 2308 110333 2.05 112641 53 2351 106234 2.17 108585 54 2264 105664 2.10 107928 55 2211 102284 2.12 104495 56 2137 100017 2.09 102154 57 2250 99845 2.20 102095 58 2004 94655 2.07 96659 59 1977 92576 2.09 94553 60 1922 90841 2.07 92763 61 1816 86865 2.05 88681 62 1802 85090 2.07 86892 63 1817 83312 2.13 85129 64 1761 80072 2.15 81833 65 1645 78095 2.06 79740 66 1644 76800 2.10 78444 67 1506 73494 2.01 75000 68 1613 72213 2.18 73826 69 1636 69420 2.30 71056 70 1487 68217 2.13 69704 71 1435 66021 2.13 67456 72 1365 64330 2.08 65695 73 1372 62060 2.16 63432 74 1389 59655 2.28 61044 75 1328 59306 2.19 60634 76 1253 55920 2.19 57173 77 1206 53039 2.22 54245 78 1080 49323 2.14 50403 79 968 42606 2.22 43574 80 681 28237 2.35 28918 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 111173 1301501 7.87 1412674 2 83781 1064777 7.29 1148558 3 61028 1012833 5.68 1073861 4 50879 952472 5.07 1003351 5 51810 910310 5.38 962120 6 55830 836546 6.26 892376 7 40224 829322 4.63 869546 8 40188 799722 4.78 839910 9 40667 802698 4.82 843365 10 38534 797766 4.61 836300 11 36229 756981 4.57 793210 12 34020 747914 4.35 781934 13 33262 749449 4.25 782711 14 31388 731238 4.12 762626 15 30291 732125 3.97 762416 16 29422 725672 3.90 755094 17 27407 703743 3.75 731150 18 26257 694818 3.64 721075 19 25664 684638 3.61 710302 20 24198 664398 3.51 688596 21 23777 656285 3.50 680062 22 22653 638054 3.43 660707 23 21674 629036 3.33 650710 24 21009 617823 3.29 638832 25 20723 610769 3.28 631492 26 19144 596026 3.11 615170 27 18871 584471 3.13 603342 28 18141 580535 3.03 598676 29 17276 561609 2.98 578885 30 16845 552295 2.96 569140 31 16683 558349 2.90 575032 32 15359 530207 2.82 545566 33 14889 520560 2.78 535449 34 14469 514896 2.73 529365 35 14041 504037 2.71 518078 36 13349 494861 2.63 508210 37 12837 487156 2.57 499993 38 12185 473825 2.51 486010 39 11781 464927 2.47 476708 40 11575 459241 2.46 470816 41 10967 446010 2.40 456977 42 10600 433363 2.39 443963 43 10423 426816 2.38 437239 44 9807 411577 2.33 421384 45 9629 399895 2.35 409524 46 9643 397994 2.37 407637 47 9229 386990 2.33 396219 48 8959 383215 2.28 392174 49 8968 376755 2.32 385723 50 8459 354911 2.33 363370 51 8118 347199 2.28 355317 52 8234 348248 2.31 356482 53 7918 326672 2.37 334590 54 7494 317566 2.31 325060 55 7640 311450 2.39 319090 56 7323 304179 2.35 311502 57 7332 300949 2.38 308281 58 6865 289786 2.31 296651 59 6599 286270 2.25 292869 60 6556 275478 2.32 282034 61 6339 266571 2.32 272910 62 6089 259428 2.29 265517 63 5984 253683 2.30 259667 64 6033 253702 2.32 259735 65 5768 241099 2.34 246867 66 5677 233031 2.38 238708 67 5503 229863 2.34 235366 68 5508 229091 2.35 234599 69 5567 220844 2.46 226411 70 5103 211784 2.35 216887 71 4981 206488 2.36 211469 72 4846 203210 2.33 208056 73 4764 193479 2.40 198243 74 4808 185944 2.52 190752 75 4549 180440 2.46 184989 76 4595 175054 2.56 179649 77 4188 166520 2.45 170708 78 3889 156185 2.43 160074 79 3340 136971 2.38 140311 80 2295 91280 2.45 93575