zr2096_8_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 13452841 lines in total Total number of methylation call strings processed: 26905682 Final Cytosine Methylation Report ================================= Total number of C's analysed: 228933398 Total methylated C's in CpG context: 18154221 Total methylated C's in CHG context: 1361580 Total methylated C's in CHH context: 7326787 Total C to T conversions in CpG context: 9182606 Total C to T conversions in CHG context: 47670865 Total C to T conversions in CHH context: 145237339 C methylated in CpG context: 66.4% C methylated in CHG context: 2.8% C methylated in CHH context: 4.8%