CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 178318 111746 61.48 290064 2 198332 106206 65.13 304538 3 184964 103983 64.01 288947 4 174000 99331 63.66 273331 5 176111 99524 63.89 275635 6 175804 96585 64.54 272389 7 184330 104122 63.90 288452 8 181165 97163 65.09 278328 9 181972 95186 65.66 277158 10 187534 97079 65.89 284613 11 190780 98173 66.02 288953 12 190154 96124 66.42 286278 13 191552 95661 66.69 287213 14 191401 96863 66.40 288264 15 192734 95086 66.96 287820 16 194206 94833 67.19 289039 17 194003 96518 66.78 290521 18 194871 94527 67.34 289398 19 196146 95350 67.29 291496 20 196950 95191 67.42 292141 21 198248 95136 67.57 293384 22 197912 95764 67.39 293676 23 198039 95452 67.48 293491 24 197847 94829 67.60 292676 25 201455 95778 67.78 297233 26 200126 96233 67.53 296359 27 198959 93892 67.94 292851 28 201001 95345 67.83 296346 29 199910 94977 67.79 294887 30 199149 93861 67.97 293010 31 202020 95081 68.00 297101 32 201656 94626 68.06 296282 33 200487 93167 68.27 293654 34 203590 94794 68.23 298384 35 200590 93880 68.12 294470 36 198692 91552 68.46 290244 37 199746 93131 68.20 292877 38 199683 92616 68.31 292299 39 197831 91328 68.42 289159 40 199055 92667 68.23 291722 41 195048 90815 68.23 285863 42 192859 89186 68.38 282045 43 191934 88867 68.35 280801 44 191000 89837 68.01 280837 45 188122 88374 68.04 276496 46 188761 88652 68.04 277413 47 187325 88591 67.89 275916 48 183800 86989 67.88 270789 49 182642 86929 67.75 269571 50 179865 86785 67.45 266650 51 176379 84138 67.70 260517 52 175783 83748 67.73 259531 53 173919 83695 67.51 257614 54 172101 82399 67.62 254500 55 172294 82007 67.75 254301 56 170130 81750 67.54 251880 57 167856 81000 67.45 248856 58 165222 79641 67.48 244863 59 161405 79175 67.09 240580 60 159125 77861 67.15 236986 61 157854 77437 67.09 235291 62 154126 76082 66.95 230208 63 151511 74325 67.09 225836 64 149869 74575 66.77 224444 65 147715 73470 66.78 221185 66 144570 71668 66.86 216238 67 142771 71822 66.53 214593 68 140987 70534 66.65 211521 69 137119 68952 66.54 206071 70 135581 69101 66.24 204682 71 133389 68055 66.22 201444 72 130641 67246 66.02 197887 73 128243 66309 65.92 194552 74 125352 66255 65.42 191607 75 121644 63388 65.74 185032 76 118348 62733 65.36 181081 77 114007 60312 65.40 174319 78 104129 56659 64.76 160788 79 84038 46211 64.52 130249 80 39407 21792 64.39 61199 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 47583 477592 9.06 525175 2 29697 492262 5.69 521959 3 24653 492676 4.77 517329 4 18962 483959 3.77 502921 5 20496 472841 4.15 493337 6 22171 477857 4.43 500028 7 16860 480628 3.39 497488 8 17191 496563 3.35 513754 9 16291 483233 3.26 499524 10 15837 483101 3.17 498938 11 15578 484332 3.12 499910 12 15568 491784 3.07 507352 13 15697 484877 3.14 500574 14 14729 488746 2.93 503475 15 14757 504418 2.84 519175 16 14537 499780 2.83 514317 17 14013 497296 2.74 511309 18 14238 509469 2.72 523707 19 13982 503754 2.70 517736 20 13831 504056 2.67 517887 21 13946 511474 2.65 525420 22 13671 505591 2.63 519262 23 13671 510930 2.61 524601 24 14145 517265 2.66 531410 25 13243 511188 2.53 524431 26 13443 511561 2.56 525004 27 13314 522615 2.48 535929 28 12775 516538 2.41 529313 29 13091 520997 2.45 534088 30 12488 516509 2.36 528997 31 12756 520123 2.39 532879 32 12469 518149 2.35 530618 33 12808 522599 2.39 535407 34 12664 510583 2.42 523247 35 12661 513378 2.41 526039 36 12282 514247 2.33 526529 37 12020 504831 2.33 516851 38 12178 504168 2.36 516346 39 11878 510973 2.27 522851 40 11611 503418 2.25 515029 41 11680 501736 2.27 513416 42 11731 501767 2.28 513498 43 11060 495443 2.18 506503 44 10968 486485 2.20 497453 45 11145 491376 2.22 502521 46 10982 481639 2.23 492621 47 11300 479129 2.30 490429 48 10957 475859 2.25 486816 49 10618 468793 2.21 479411 50 10758 463057 2.27 473815 51 10980 464265 2.31 475245 52 10157 454324 2.19 464481 53 10456 449929 2.27 460385 54 9762 448227 2.13 457989 55 9941 441290 2.20 451231 56 9756 437527 2.18 447283 57 9539 438229 2.13 447768 58 9468 425481 2.18 434949 59 9813 420035 2.28 429848 60 9191 419246 2.15 428437 61 9058 408086 2.17 417144 62 9184 402209 2.23 411393 63 8793 400556 2.15 409349 64 8719 389853 2.19 398572 65 8612 385389 2.19 394001 66 8502 379835 2.19 388337 67 8356 372918 2.19 381274 68 8241 366989 2.20 375230 69 8244 362654 2.22 370898 70 8005 354099 2.21 362104 71 8196 348911 2.30 357107 72 7748 345284 2.19 353032 73 7934 338148 2.29 346082 74 7706 332140 2.27 339846 75 8223 328129 2.44 336352 76 7877 317524 2.42 325401 77 7606 303778 2.44 311384 78 7294 283734 2.51 291028 79 6016 228371 2.57 234387 80 2780 106071 2.55 108851 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 157696 1537050 9.30 1694746 2 146387 1542467 8.67 1688854 3 130913 1558698 7.75 1689611 4 120247 1545212 7.22 1665459 5 118548 1512036 7.27 1630584 6 120668 1452938 7.67 1573606 7 110862 1451425 7.10 1562287 8 105258 1439462 6.81 1544720 9 111461 1459874 7.09 1571335 10 109721 1477471 6.91 1587192 11 106088 1447876 6.83 1553964 12 107348 1456596 6.86 1563944 13 110570 1474119 6.98 1584689 14 103319 1480649 6.52 1583968 15 106912 1501675 6.65 1608587 16 107653 1517183 6.63 1624836 17 103147 1512075 6.39 1615222 18 104226 1526228 6.39 1630454 19 106293 1537296 6.47 1643589 20 102011 1529266 6.25 1631277 21 103905 1538616 6.33 1642521 22 102516 1533647 6.27 1636163 23 97837 1536673 5.99 1634510 24 99963 1538092 6.10 1638055 25 98142 1553061 5.94 1651203 26 94967 1544012 5.79 1638979 27 96855 1550172 5.88 1647027 28 94923 1554646 5.75 1649569 29 92715 1541478 5.67 1634193 30 92204 1541506 5.64 1633710 31 91735 1570794 5.52 1662529 32 86981 1540399 5.34 1627380 33 88160 1532259 5.44 1620419 34 87170 1543143 5.35 1630313 35 83088 1541639 5.11 1624727 36 82654 1533113 5.12 1615767 37 82712 1536742 5.11 1619454 38 78209 1521394 4.89 1599603 39 78146 1522499 4.88 1600645 40 76310 1524227 4.77 1600537 41 74308 1510731 4.69 1585039 42 72446 1496277 4.62 1568723 43 70767 1492549 4.53 1563316 44 68023 1468891 4.43 1536914 45 66385 1451077 4.37 1517462 46 65104 1456406 4.28 1521510 47 63362 1438979 4.22 1502341 48 61594 1438928 4.10 1500522 49 60840 1431288 4.08 1492128 50 57098 1387753 3.95 1444851 51 57321 1369468 4.02 1426789 52 54409 1378567 3.80 1432976 53 52377 1338454 3.77 1390831 54 50727 1323024 3.69 1373751 55 49951 1314349 3.66 1364300 56 46863 1295469 3.49 1342332 57 47210 1292541 3.52 1339751 58 45213 1268186 3.44 1313399 59 44706 1257384 3.43 1302090 60 42461 1238942 3.31 1281403 61 41339 1216689 3.29 1258028 62 40046 1196981 3.24 1237027 63 39153 1188757 3.19 1227910 64 38269 1186430 3.12 1224699 65 36556 1152913 3.07 1189469 66 36035 1136135 3.07 1172170 67 35689 1124793 3.08 1160482 68 34243 1118818 2.97 1153061 69 34123 1097838 3.01 1131961 70 33134 1074358 2.99 1107492 71 33206 1054094 3.05 1087300 72 32140 1043112 2.99 1075252 73 31718 1016216 3.03 1047934 74 30668 993638 2.99 1024306 75 32150 971974 3.20 1004124 76 31269 954498 3.17 985767 77 29483 915249 3.12 944732 78 27736 854339 3.14 882075 79 22486 695183 3.13 717669 80 9611 313763 2.97 323374 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 121245 83798 59.13 205043 2 119301 68766 63.44 188067 3 108186 64025 62.82 172211 4 90861 58980 60.64 149841 5 89610 56935 61.15 146545 6 88256 54087 62.00 142343 7 91149 59316 60.58 150465 8 88238 52421 62.73 140659 9 86381 49969 63.35 136350 10 87827 50611 63.44 138438 11 87768 50472 63.49 138240 12 84618 48706 63.47 133324 13 84147 46646 64.34 130793 14 83419 46473 64.22 129892 15 82975 45156 64.76 128131 16 80666 44058 64.68 124724 17 78765 43672 64.33 122437 18 76535 41384 64.90 117919 19 74918 41026 64.62 115944 20 73381 40139 64.64 113520 21 72394 39074 64.95 111468 22 71680 37704 65.53 109384 23 69732 37342 65.13 107074 24 68835 35981 65.67 104816 25 68888 35672 65.88 104560 26 66399 35316 65.28 101715 27 64442 33552 65.76 97994 28 64288 33378 65.82 97666 29 62659 32666 65.73 95325 30 61046 31211 66.17 92257 31 60778 31298 66.01 92076 32 60002 30355 66.41 90357 33 58861 29494 66.62 88355 34 59277 29346 66.89 88623 35 56444 28656 66.33 85100 36 55295 27249 66.99 82544 37 54157 26949 66.77 81106 38 53128 26404 66.80 79532 39 51959 25901 66.73 77860 40 51720 25665 66.83 77385 41 49563 24752 66.69 74315 42 48376 23851 66.98 72227 43 47116 23206 67.00 70322 44 46017 22935 66.74 68952 45 45091 22355 66.85 67446 46 44382 21638 67.23 66020 47 43086 21685 66.52 64771 48 41722 21091 66.42 62813 49 40960 20497 66.65 61457 50 40012 19959 66.72 59971 51 38470 19116 66.80 57586 52 38045 18877 66.84 56922 53 36917 18481 66.64 55398 54 35807 17981 66.57 53788 55 35605 18031 66.38 53636 56 34742 17433 66.59 52175 57 34466 17375 66.48 51841 58 32975 16491 66.66 49466 59 31904 16195 66.33 48099 60 30914 15604 66.46 46518 61 30653 15498 66.42 46151 62 29090 15196 65.69 44286 63 28504 14663 66.03 43167 64 28112 14285 66.31 42397 65 27395 14016 66.15 41411 66 26544 13891 65.65 40435 67 25826 13659 65.41 39485 68 24863 12992 65.68 37855 69 24301 12888 65.34 37189 70 23870 12692 65.29 36562 71 23339 12394 65.31 35733 72 22462 12187 64.83 34649 73 21860 11792 64.96 33652 74 21268 11665 64.58 32933 75 20492 10965 65.14 31457 76 19877 10692 65.02 30569 77 18827 10521 64.15 29348 78 17442 9829 63.96 27271 79 15037 8575 63.68 23612 80 9865 6075 61.89 15940 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 39073 351251 10.01 390324 2 18560 306715 5.71 325275 3 17588 290989 5.70 308577 4 11072 277399 3.84 288471 5 12506 256082 4.66 268588 6 15178 251387 5.69 266565 7 9315 250498 3.59 259813 8 9803 258445 3.65 268248 9 8590 239822 3.46 248412 10 8275 234831 3.40 243106 11 8127 232863 3.37 240990 12 7357 233627 3.05 240984 13 7386 226345 3.16 233731 14 6937 221662 3.03 228599 15 6729 224106 2.92 230835 16 6489 217809 2.89 224298 17 6122 209771 2.84 215893 18 5943 208521 2.77 214464 19 5633 201503 2.72 207136 20 5340 197633 2.63 202973 21 5493 195932 2.73 201425 22 5159 189382 2.65 194541 23 4920 189650 2.53 194570 24 4811 187024 2.51 191835 25 4693 180375 2.54 185068 26 4427 176789 2.44 181216 27 4360 178381 2.39 182741 28 4114 171531 2.34 175645 29 4067 170983 2.32 175050 30 3799 165564 2.24 169363 31 3811 163251 2.28 167062 32 3560 160086 2.18 163646 33 3519 159162 2.16 162681 34 3228 152489 2.07 155717 35 3210 150506 2.09 153716 36 3003 147211 2.00 150214 37 3008 142217 2.07 145225 38 2977 140908 2.07 143885 39 2810 139862 1.97 142672 40 2710 135593 1.96 138303 41 2694 133572 1.98 136266 42 2538 131030 1.90 133568 43 2415 126709 1.87 129124 44 2295 122851 1.83 125146 45 2378 121885 1.91 124263 46 2197 117810 1.83 120007 47 2234 116782 1.88 119016 48 2280 112343 1.99 114623 49 2181 109105 1.96 111286 50 2026 106323 1.87 108349 51 1995 105277 1.86 107272 52 1957 102085 1.88 104042 53 1949 99559 1.92 101508 54 1871 97243 1.89 99114 55 1806 94923 1.87 96729 56 1814 92188 1.93 94002 57 1896 92723 2.00 94619 58 1706 88619 1.89 90325 59 1753 86228 1.99 87981 60 1644 85146 1.89 86790 61 1635 81377 1.97 83012 62 1478 79660 1.82 81138 63 1518 78785 1.89 80303 64 1453 76141 1.87 77594 65 1451 74170 1.92 75621 66 1469 72391 1.99 73860 67 1300 70406 1.81 71706 68 1342 69248 1.90 70590 69 1274 67276 1.86 68550 70 1325 65301 1.99 66626 71 1324 63438 2.04 64762 72 1257 61798 1.99 63055 73 1233 60730 1.99 61963 74 1209 58670 2.02 59879 75 1115 57944 1.89 59059 76 1098 55271 1.95 56369 77 1076 52703 2.00 53779 78 1012 49173 2.02 50185 79 933 42637 2.14 43570 80 606 28314 2.10 28920 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 107943 1157908 8.53 1265851 2 81985 965758 7.82 1047743 3 58135 917954 5.96 976089 4 47404 871460 5.16 918864 5 47954 834572 5.43 882526 6 53942 774367 6.51 828309 7 38983 761282 4.87 800265 8 37756 742557 4.84 780313 9 38909 742831 4.98 781740 10 36450 737611 4.71 774061 11 34003 705088 4.60 739091 12 31652 696949 4.34 728601 13 31409 696138 4.32 727547 14 28818 683994 4.04 712812 15 29036 682603 4.08 711639 16 27524 675553 3.91 703077 17 25817 658876 3.77 684693 18 25139 646463 3.74 671602 19 24036 631856 3.66 655892 20 22353 617680 3.49 640033 21 21999 610497 3.48 632496 22 21238 591980 3.46 613218 23 20469 586790 3.37 607259 24 19918 574993 3.35 594911 25 19134 568749 3.25 587883 26 18147 555513 3.16 573660 27 18462 545616 3.27 564078 28 17123 539120 3.08 556243 29 16381 526139 3.02 542520 30 15848 516617 2.98 532465 31 16387 518568 3.06 534955 32 14631 497784 2.86 512415 33 14533 486495 2.90 501028 34 13751 483607 2.76 497358 35 13427 474130 2.75 487557 36 12914 464340 2.71 477254 37 12859 458528 2.73 471387 38 11803 446215 2.58 458018 39 11428 438264 2.54 449692 40 11212 433188 2.52 444400 41 10634 423190 2.45 433824 42 10313 411921 2.44 422234 43 10198 405602 2.45 415800 44 9722 391667 2.42 401389 45 9723 381204 2.49 390927 46 9374 379885 2.41 389259 47 9090 369351 2.40 378441 48 9117 366692 2.43 375809 49 8990 360268 2.43 369258 50 8246 343069 2.35 351315 51 8184 333583 2.39 341767 52 8124 334137 2.37 342261 53 7953 315979 2.46 323932 54 7770 308002 2.46 315772 55 7804 304105 2.50 311909 56 7414 297302 2.43 304716 57 7892 292960 2.62 300852 58 7205 283561 2.48 290766 59 6975 281845 2.41 288820 60 6786 272051 2.43 278837 61 7029 261871 2.61 268900 62 6285 257989 2.38 264274 63 6413 253320 2.47 259733 64 6217 251546 2.41 257763 65 6014 240362 2.44 246376 66 5836 233523 2.44 239359 67 5743 230194 2.43 235937 68 5741 229508 2.44 235249 69 5828 222675 2.55 228503 70 5467 214573 2.48 220040 71 5524 209083 2.57 214607 72 5305 206644 2.50 211949 73 5185 197560 2.56 202745 74 4817 191923 2.45 196740 75 4919 186250 2.57 191169 76 4603 181826 2.47 186429 77 4491 174325 2.51 178816 78 4181 163922 2.49 168103 79 3734 145031 2.51 148765 80 2290 97458 2.30 99748