Bismark

Bismark Processing Report

/gscratch/scrubbed/yaamini/data/Virginica-MBD/2018-10-17-Trimmed-Files//zr2096_8_s1_R1_val_1.fq.gz and /gscratch/scrubbed/yaamini/data/Virginica-MBD/2018-10-17-Trimmed-Files//zr2096_8_s1_R2_val_2.fq.gz

Data processed at 00:20 on 2018-11-07


Alignment

Sequence pairs analysed in total 29483218
Paired-end alignments with a unique best hit 14200416
Pairs without alignments under any condition 9943053
Pairs that did not map uniquely 5339749
Genomic sequence context not extractable (edges of chromosomes) 11

Cytosine Methylation

Total C's analysed 362392795
Methylated C's in CpG context 29294128
Methylated C's in CHG context 2164397
Methylated C's in CHH context 13260103
Methylated C's in Unknown context 1218115
Unmethylated C's in CpG context 14337861
Unmethylated C's in CHG context 75732890
Unmethylated C's in CHH context 227603416
Unmethylated C's in Unknown context 4698419
Percentage methylation (CpG context) 67.1%
Percentage methylation (CHG context) 2.8%
Percentage methylation (CHH context) 5.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3629946 original top strand
CTOT 3487296 complementary to original top strand
CTOB 3468647 complementary to original bottom strand
OB 3614516 original bottom strand