zr2096_7_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 14617414 lines in total Total number of methylation call strings processed: 29234828 Final Cytosine Methylation Report ================================= Total number of C's analysed: 260442115 Total methylated C's in CpG context: 23405343 Total methylated C's in CHG context: 1551207 Total methylated C's in CHH context: 7056497 Total C to T conversions in CpG context: 9271729 Total C to T conversions in CHG context: 54544532 Total C to T conversions in CHH context: 164612807 C methylated in CpG context: 71.6% C methylated in CHG context: 2.8% C methylated in CHH context: 4.1%