CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 221114 115337 65.72 336451 2 248627 108631 69.59 357258 3 230871 106764 68.38 337635 4 217020 100993 68.24 318013 5 218606 99489 68.72 318095 6 220921 97085 69.47 318006 7 229718 105386 68.55 335104 8 226165 97236 69.93 323401 9 225897 94637 70.48 320534 10 235348 96788 70.86 332136 11 238764 98450 70.80 337214 12 237275 95608 71.28 332883 13 239847 94208 71.80 334055 14 240054 96149 71.40 336203 15 241967 94415 71.93 336382 16 242984 94769 71.94 337753 17 243506 95666 71.79 339172 18 242660 93499 72.19 336159 19 245389 93473 72.42 338862 20 245703 94027 72.32 339730 21 247592 93331 72.62 340923 22 247175 93075 72.65 340250 23 249579 93076 72.84 342655 24 248846 92419 72.92 341265 25 251668 94242 72.76 345910 26 250770 93820 72.77 344590 27 249026 92279 72.96 341305 28 252113 92622 73.13 344735 29 251737 92325 73.17 344062 30 250367 90928 73.36 341295 31 254778 93514 73.15 348292 32 253352 92245 73.31 345597 33 252594 90820 73.55 343414 34 255888 91924 73.57 347812 35 254030 91220 73.58 345250 36 250254 89169 73.73 339423 37 251490 90693 73.50 342183 38 252359 91100 73.48 343459 39 251475 89591 73.73 341066 40 252293 90235 73.66 342528 41 247806 89059 73.56 336865 42 244232 87157 73.70 331389 43 244790 87007 73.78 331797 44 243546 87581 73.55 331127 45 239827 86135 73.58 325962 46 240677 86886 73.48 327563 47 239019 87318 73.24 326337 48 234767 85543 73.29 320310 49 234317 85460 73.28 319777 50 231951 85920 72.97 317871 51 226961 83364 73.14 310325 52 226535 83058 73.17 309593 53 223586 82780 72.98 306366 54 222714 81280 73.26 303994 55 222392 81886 73.09 304278 56 219194 82175 72.73 301369 57 217858 80478 73.02 298336 58 213073 79791 72.75 292864 59 209444 79516 72.48 288960 60 206415 77498 72.70 283913 61 205241 78126 72.43 283367 62 200713 76251 72.47 276964 63 196993 75189 72.38 272182 64 195893 74679 72.40 270572 65 192381 74120 72.19 266501 66 188222 72989 72.06 261211 67 186703 71822 72.22 258525 68 183632 72096 71.81 255728 69 180369 70270 71.96 250639 70 178519 70262 71.76 248781 71 175145 69133 71.70 244278 72 171647 68532 71.47 240179 73 168468 67649 71.35 236117 74 164082 67192 70.95 231274 75 159706 65252 70.99 224958 76 155794 64078 70.86 219872 77 149306 62945 70.34 212251 78 136775 58902 69.90 195677 79 110192 47542 69.86 157734 80 49770 21786 69.55 71556 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 54082 534898 9.18 588980 2 32014 551435 5.49 583449 3 28011 553038 4.82 581049 4 20627 546096 3.64 566723 5 22282 530190 4.03 552472 6 24708 536744 4.40 561452 7 18793 541357 3.35 560150 8 19343 554574 3.37 573917 9 17767 539434 3.19 557201 10 17583 540125 3.15 557708 11 17166 542219 3.07 559385 12 16648 552476 2.93 569124 13 16962 543312 3.03 560274 14 16256 545110 2.90 561366 15 15884 563058 2.74 578942 16 15737 558917 2.74 574654 17 15593 555376 2.73 570969 18 15470 569958 2.64 585428 19 15254 563061 2.64 578315 20 14777 562276 2.56 577053 21 14983 572237 2.55 587220 22 14586 567338 2.51 581924 23 14671 572320 2.50 586991 24 15177 578333 2.56 593510 25 14375 573766 2.44 588141 26 14568 570210 2.49 584778 27 14281 585687 2.38 599968 28 14086 579638 2.37 593724 29 14211 583735 2.38 597946 30 13597 579821 2.29 593418 31 13674 584088 2.29 597762 32 13627 581952 2.29 595579 33 14065 586687 2.34 600752 34 13967 575717 2.37 589684 35 13472 576321 2.28 589793 36 13076 578602 2.21 591678 37 13185 567726 2.27 580911 38 13140 567814 2.26 580954 39 12779 576003 2.17 588782 40 12688 568392 2.18 581080 41 12459 565452 2.16 577911 42 12226 564930 2.12 577156 43 12173 557993 2.13 570166 44 12267 550767 2.18 563034 45 12105 555263 2.13 567368 46 12014 545055 2.16 557069 47 12487 543211 2.25 555698 48 12137 540142 2.20 552279 49 11654 531554 2.15 543208 50 11857 524288 2.21 536145 51 12283 526330 2.28 538613 52 11332 516334 2.15 527666 53 11269 511803 2.15 523072 54 11105 510280 2.13 521385 55 11024 504539 2.14 515563 56 10933 498861 2.14 509794 57 10770 499476 2.11 510246 58 10878 487374 2.18 498252 59 11110 479634 2.26 490744 60 10717 481479 2.18 492196 61 10326 467910 2.16 478236 62 10641 460833 2.26 471474 63 10260 460015 2.18 470275 64 10090 448976 2.20 459066 65 10184 443736 2.24 453920 66 9843 439310 2.19 449153 67 9863 430285 2.24 440148 68 9559 422493 2.21 432052 69 9677 419175 2.26 428852 70 9373 410358 2.23 419731 71 9801 403048 2.37 412849 72 9228 399247 2.26 408475 73 9161 390785 2.29 399946 74 9323 385189 2.36 394512 75 9631 379518 2.47 389149 76 9281 367136 2.47 376417 77 9196 352880 2.54 362076 78 8718 328333 2.59 337051 79 6992 263355 2.59 270347 80 3044 119115 2.49 122159 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 153265 1693617 8.30 1846882 2 142042 1690497 7.75 1832539 3 123081 1709308 6.72 1832389 4 110505 1698406 6.11 1808911 5 111518 1662734 6.29 1774252 6 112831 1591202 6.62 1704033 7 99788 1597090 5.88 1696878 8 97133 1583150 5.78 1680283 9 101264 1606941 5.93 1708205 10 99129 1630080 5.73 1729209 11 97450 1593730 5.76 1691180 12 96712 1603305 5.69 1700017 13 98695 1626904 5.72 1725599 14 93817 1628417 5.45 1722234 15 95024 1652195 5.44 1747219 16 94765 1671589 5.37 1766354 17 92479 1664938 5.26 1757417 18 91687 1683969 5.16 1775656 19 93215 1697757 5.20 1790972 20 90276 1689434 5.07 1779710 21 91421 1699585 5.10 1791006 22 90673 1694175 5.08 1784848 23 87094 1700904 4.87 1787998 24 88175 1700288 4.93 1788463 25 87271 1716634 4.84 1803905 26 84477 1708235 4.71 1792712 27 84953 1714809 4.72 1799762 28 83000 1726099 4.59 1809099 29 81980 1707641 4.58 1789621 30 81190 1707948 4.54 1789138 31 80518 1746082 4.41 1826600 32 77149 1710066 4.32 1787215 33 78356 1704053 4.40 1782409 34 77393 1716314 4.31 1793707 35 73904 1715494 4.13 1789398 36 73022 1709435 4.10 1782457 37 71771 1713973 4.02 1785744 38 70274 1698814 3.97 1769088 39 69142 1697304 3.91 1766446 40 67929 1705012 3.83 1772941 41 66067 1690761 3.76 1756828 42 64714 1673232 3.72 1737946 43 63617 1673053 3.66 1736670 44 61164 1643774 3.59 1704938 45 60353 1632189 3.57 1692542 46 59393 1638338 3.50 1697731 47 58631 1617615 3.50 1676246 48 56900 1618146 3.40 1675046 49 55708 1612368 3.34 1668076 50 53887 1566748 3.33 1620635 51 54208 1545228 3.39 1599436 52 52014 1559322 3.23 1611336 53 49971 1513681 3.20 1563652 54 48930 1496657 3.17 1545587 55 48394 1490712 3.14 1539106 56 46684 1471741 3.07 1518425 57 46168 1467185 3.05 1513353 58 44642 1444932 3.00 1489574 59 45129 1430636 3.06 1475765 60 42544 1410629 2.93 1453173 61 42137 1387949 2.95 1430086 62 41747 1364769 2.97 1406516 63 40036 1358029 2.86 1398065 64 39652 1358168 2.84 1397820 65 38787 1320325 2.85 1359112 66 37524 1299985 2.81 1337509 67 37431 1290576 2.82 1328007 68 36712 1282031 2.78 1318743 69 35978 1259501 2.78 1295479 70 35234 1233260 2.78 1268494 71 35836 1210640 2.87 1246476 72 34450 1199283 2.79 1233733 73 34325 1171873 2.85 1206198 74 33291 1147192 2.82 1180483 75 35187 1121415 3.04 1156602 76 34256 1097305 3.03 1131561 77 32363 1055873 2.97 1088236 78 30410 979032 3.01 1009442 79 24756 794756 3.02 819512 80 10330 349125 2.87 359455 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 156358 88591 63.83 244949 2 156501 73123 68.16 229624 3 142260 69385 67.22 211645 4 120073 63151 65.53 183224 5 117997 61034 65.91 179031 6 116786 57881 66.86 174667 7 120155 63577 65.40 183732 8 117268 55317 67.95 172585 9 115495 53596 68.30 169091 10 116886 53729 68.51 170615 11 116821 53879 68.44 170700 12 112635 51691 68.54 164326 13 112091 49558 69.34 161649 14 111127 49811 69.05 160938 15 110728 47553 69.96 158281 16 108637 46594 69.98 155231 17 105280 46307 69.45 151587 18 102604 43728 70.12 146332 19 100077 42566 70.16 142643 20 99131 42145 70.17 141276 21 97433 40858 70.46 138291 22 94864 40346 70.16 135210 23 93577 39108 70.53 132685 24 93116 38129 70.95 131245 25 92041 37990 70.78 130031 26 89898 36753 70.98 126651 27 87497 35280 71.26 122777 28 86210 35140 71.04 121350 29 84930 34395 71.18 119325 30 82769 32605 71.74 115374 31 82897 32547 71.81 115444 32 81345 31619 72.01 112964 33 79913 30989 72.06 110902 34 79699 30845 72.10 110544 35 77019 29604 72.23 106623 36 74656 28646 72.27 103302 37 73127 28157 72.20 101284 38 72452 27625 72.40 100077 39 70937 26920 72.49 97857 40 70113 27297 71.98 97410 41 67211 25821 72.25 93032 42 65125 24725 72.48 89850 43 64005 24287 72.49 88292 44 63427 23770 72.74 87197 45 61474 23153 72.64 84627 46 60712 22894 72.62 83606 47 59510 22994 72.13 82504 48 57305 21737 72.50 79042 49 55979 21135 72.59 77114 50 54465 20966 72.21 75431 51 53053 19943 72.68 72996 52 52213 19878 72.43 72091 53 51085 19263 72.62 70348 54 49615 19015 72.29 68630 55 49340 18542 72.68 67882 56 47607 18445 72.08 66052 57 47205 18204 72.17 65409 58 45283 17303 72.35 62586 59 43929 17232 71.83 61161 60 42702 16431 72.21 59133 61 41822 16203 72.08 58025 62 40600 15824 71.96 56424 63 39511 15415 71.93 54926 64 38607 15110 71.87 53717 65 37847 14830 71.85 52677 66 35883 14322 71.47 50205 67 35954 14025 71.94 49979 68 34523 13856 71.36 48379 69 33568 13319 71.59 46887 70 32932 13394 71.09 46326 71 32333 13306 70.85 45639 72 30699 13033 70.20 43732 73 30054 12441 70.72 42495 74 29615 12430 70.44 42045 75 28171 11763 70.54 39934 76 26757 11376 70.17 38133 77 25605 11039 69.88 36644 78 23816 10565 69.27 34381 79 20338 9212 68.83 29550 80 13583 6514 67.59 20097 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 47917 398998 10.72 446915 2 22484 353084 5.99 375568 3 22074 338301 6.13 360375 4 13219 327304 3.88 340523 5 14997 299625 4.77 314622 6 18736 294052 5.99 312788 7 11072 295060 3.62 306132 8 12382 303313 3.92 315695 9 10710 279481 3.69 290191 10 10212 277626 3.55 287838 11 9694 274174 3.41 283868 12 8999 277350 3.14 286349 13 8853 267870 3.20 276723 14 8202 261621 3.04 269823 15 7891 266048 2.88 273939 16 7753 257813 2.92 265566 17 7507 249365 2.92 256872 18 7309 247939 2.86 255248 19 6960 238749 2.83 245709 20 6595 233172 2.75 239767 21 6313 232762 2.64 239075 22 6070 224228 2.64 230298 23 6102 224400 2.65 230502 24 5740 221783 2.52 227523 25 5688 214197 2.59 219885 26 5349 210819 2.47 216168 27 5460 211006 2.52 216466 28 5069 203816 2.43 208885 29 4929 204773 2.35 209702 30 4492 196322 2.24 200814 31 4766 195697 2.38 200463 32 4401 189883 2.27 194284 33 4451 189328 2.30 193779 34 4035 182235 2.17 186270 35 3972 180352 2.15 184324 36 3824 175476 2.13 179300 37 3653 169845 2.11 173498 38 3677 167590 2.15 171267 39 3468 166595 2.04 170063 40 3297 162068 1.99 165365 41 3209 158988 1.98 162197 42 3187 155673 2.01 158860 43 3018 151565 1.95 154583 44 3038 147065 2.02 150103 45 2825 145336 1.91 148161 46 2819 141606 1.95 144425 47 2859 139034 2.01 141893 48 2762 134572 2.01 137334 49 2658 131110 1.99 133768 50 2589 127343 1.99 129932 51 2477 126142 1.93 128619 52 2490 122247 2.00 124737 53 2442 118385 2.02 120827 54 2275 116771 1.91 119046 55 2184 113923 1.88 116107 56 2277 111611 2.00 113888 57 2387 110530 2.11 112917 58 2103 105949 1.95 108052 59 2094 103685 1.98 105779 60 1943 102578 1.86 104521 61 2123 97189 2.14 99312 62 1917 95283 1.97 97200 63 1875 94507 1.95 96382 64 1854 91261 1.99 93115 65 1833 89143 2.01 90976 66 1738 86943 1.96 88681 67 1708 84127 1.99 85835 68 1626 82925 1.92 84551 69 1599 80666 1.94 82265 70 1639 78368 2.05 80007 71 1629 76846 2.08 78475 72 1485 74500 1.95 75985 73 1495 72718 2.01 74213 74 1436 70398 2.00 71834 75 1404 69461 1.98 70865 76 1305 66753 1.92 68058 77 1263 63623 1.95 64886 78 1274 59006 2.11 60280 79 1078 51542 2.05 52620 80 812 34537 2.30 35349 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 114867 1300656 8.11 1415523 2 92023 1097567 7.74 1189590 3 64873 1053384 5.80 1118257 4 52305 1003601 4.95 1055906 5 54909 964680 5.39 1019589 6 62170 891810 6.52 953980 7 42845 883958 4.62 926803 8 42658 858927 4.73 901585 9 43114 861773 4.76 904887 10 41151 857507 4.58 898658 11 38363 821542 4.46 859905 12 35333 815941 4.15 851274 13 34812 815156 4.10 849968 14 32881 801770 3.94 834651 15 32022 798382 3.86 830404 16 30719 792958 3.73 823677 17 28745 772975 3.59 801720 18 27776 763458 3.51 791234 19 26571 746718 3.44 773289 20 25511 730080 3.38 755591 21 24865 717910 3.35 742775 22 24020 699604 3.32 723624 23 23272 690789 3.26 714061 24 21995 678743 3.14 700738 25 21947 670199 3.17 692146 26 20252 656850 2.99 677102 27 20868 643115 3.14 663983 28 19485 637045 2.97 656530 29 18287 621047 2.86 639334 30 17725 610748 2.82 628473 31 18295 614183 2.89 632478 32 16183 588280 2.68 604463 33 16522 577881 2.78 594403 34 15462 573658 2.62 589120 35 14880 562982 2.58 577862 36 14097 552617 2.49 566714 37 14056 544612 2.52 558668 38 13333 531439 2.45 544772 39 13042 520256 2.45 533298 40 12570 514550 2.38 527120 41 12108 503656 2.35 515764 42 11472 490018 2.29 501490 43 11483 481837 2.33 493320 44 10743 466269 2.25 477012 45 10858 455577 2.33 466435 46 10541 452315 2.28 462856 47 10305 439122 2.29 449427 48 10116 437165 2.26 447281 49 9997 428830 2.28 438827 50 9261 409551 2.21 418812 51 9035 398821 2.22 407856 52 9115 396798 2.25 405913 53 8741 377656 2.26 386397 54 8593 368650 2.28 377243 55 8326 363254 2.24 371580 56 7982 354434 2.20 362416 57 8623 349158 2.41 357781 58 7785 338735 2.25 346520 59 7780 335804 2.26 343584 60 7470 324895 2.25 332365 61 7883 313272 2.45 321155 62 7183 307024 2.29 314207 63 7065 301664 2.29 308729 64 7002 300418 2.28 307420 65 6548 287745 2.22 294293 66 6584 278370 2.31 284954 67 6459 275629 2.29 282088 68 6416 273866 2.29 280282 69 6283 266342 2.30 272625 70 6071 256165 2.32 262236 71 6002 249849 2.35 255851 72 5712 247224 2.26 252936 73 5664 236774 2.34 242438 74 5479 228754 2.34 234233 75 5304 222273 2.33 227577 76 5339 216450 2.41 221789 77 4954 208354 2.32 213308 78 4628 195647 2.31 200275 79 4172 172839 2.36 177011 80 2683 116090 2.26 118773