zr2096_6_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 12648681 lines in total Total number of methylation call strings processed: 25297362 Final Cytosine Methylation Report ================================= Total number of C's analysed: 205670965 Total methylated C's in CpG context: 19494840 Total methylated C's in CHG context: 1103250 Total methylated C's in CHH context: 5783632 Total C to T conversions in CpG context: 7215123 Total C to T conversions in CHG context: 43323436 Total C to T conversions in CHH context: 128750684 C methylated in CpG context: 73.0% C methylated in CHG context: 2.5% C methylated in CHH context: 4.3%