zr2096_5_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 15535269 lines in total Total number of methylation call strings processed: 31070538 Final Cytosine Methylation Report ================================= Total number of C's analysed: 263351588 Total methylated C's in CpG context: 22025352 Total methylated C's in CHG context: 1491401 Total methylated C's in CHH context: 7586556 Total C to T conversions in CpG context: 10753176 Total C to T conversions in CHG context: 53978678 Total C to T conversions in CHH context: 167516425 C methylated in CpG context: 67.2% C methylated in CHG context: 2.7% C methylated in CHH context: 4.3%