CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 213380 134206 61.39 347586 2 232428 127756 64.53 360184 3 224839 124513 64.36 349352 4 216689 117421 64.86 334110 5 218699 117517 65.05 336216 6 219313 114388 65.72 333701 7 229234 123844 64.92 353078 8 224416 114906 66.14 339322 9 223356 111469 66.71 334825 10 231740 114850 66.86 346590 11 236278 116617 66.95 352895 12 234433 113486 67.38 347919 13 238236 113107 67.81 351343 14 239230 114817 67.57 354047 15 240493 113013 68.03 353506 16 241895 112576 68.24 354471 17 243081 114904 67.90 357985 18 241392 112062 68.30 353454 19 243306 113083 68.27 356389 20 244305 112778 68.42 357083 21 244648 112571 68.49 357219 22 246706 113076 68.57 359782 23 248140 113246 68.66 361386 24 246506 111959 68.77 358465 25 249451 114149 68.61 363600 26 248376 114305 68.48 362681 27 246993 112149 68.77 359142 28 250305 113383 68.82 363688 29 248579 112828 68.78 361407 30 247456 111313 68.97 358769 31 251211 112619 69.05 363830 32 250522 112790 68.96 363312 33 249400 110819 69.24 360219 34 252913 111627 69.38 364540 35 250803 112285 69.07 363088 36 247283 110120 69.19 357403 37 247882 110264 69.21 358146 38 248357 111127 69.09 359484 39 246548 109997 69.15 356545 40 247835 109812 69.30 357647 41 241935 108648 69.01 350583 42 238902 106940 69.08 345842 43 240068 106652 69.24 346720 44 237556 107123 68.92 344679 45 235383 105123 69.13 340506 46 234506 106187 68.83 340693 47 232545 106132 68.66 338677 48 227355 104252 68.56 331607 49 227101 103710 68.65 330811 50 223120 102941 68.43 326061 51 218069 100668 68.42 318737 52 217406 99834 68.53 317240 53 215873 99710 68.40 315583 54 213783 98159 68.53 311942 55 212131 98237 68.35 310368 56 209195 97628 68.18 306823 57 208248 96959 68.23 305207 58 203434 95360 68.09 298794 59 199253 94464 67.84 293717 60 196316 92447 67.99 288763 61 194418 91484 68.00 285902 62 190483 90814 67.72 281297 63 186078 89182 67.60 275260 64 184157 88481 67.55 272638 65 180882 86668 67.61 267550 66 177076 85356 67.48 262432 67 175874 84791 67.47 260665 68 172576 83217 67.47 255793 69 168030 81501 67.34 249531 70 166771 81962 67.05 248733 71 163036 80040 67.07 243076 72 158718 78959 66.78 237677 73 155870 78231 66.58 234101 74 153158 77224 66.48 230382 75 147281 74920 66.28 222201 76 143725 74275 65.93 218000 77 136979 71354 65.75 208333 78 126786 66962 65.44 193748 79 101096 54633 64.92 155729 80 46700 25422 64.75 72122 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 46194 557924 7.65 604118 2 33094 576842 5.43 609936 3 27093 573114 4.51 600207 4 21630 559098 3.72 580728 5 23214 550951 4.04 574165 6 23216 557220 4.00 580436 7 19710 557953 3.41 577663 8 19768 573654 3.33 593422 9 19039 557500 3.30 576539 10 18789 557591 3.26 576380 11 18659 558361 3.23 577020 12 17967 571015 3.05 588982 13 18142 562716 3.12 580858 14 17362 566978 2.97 584340 15 17139 582663 2.86 599802 16 16838 579578 2.82 596416 17 16544 574713 2.80 591257 18 16257 588876 2.69 605133 19 15894 583275 2.65 599169 20 15699 581994 2.63 597693 21 15603 595117 2.55 610720 22 15237 584784 2.54 600021 23 15346 592486 2.52 607832 24 15844 602347 2.56 618191 25 15107 594915 2.48 610022 26 15073 594059 2.47 609132 27 14653 606803 2.36 621456 28 14668 600721 2.38 615389 29 14749 606936 2.37 621685 30 14354 602115 2.33 616469 31 14105 605424 2.28 619529 32 14125 603573 2.29 617698 33 14624 608182 2.35 622806 34 14329 595657 2.35 609986 35 13810 596442 2.26 610252 36 13658 598210 2.23 611868 37 13525 587507 2.25 601032 38 13480 587396 2.24 600876 39 13313 596093 2.18 609406 40 12955 586957 2.16 599912 41 13104 582230 2.20 595334 42 12538 582790 2.11 595328 43 12490 574810 2.13 587300 44 12658 564936 2.19 577594 45 12558 572132 2.15 584690 46 12438 559646 2.17 572084 47 12626 556573 2.22 569199 48 12304 551515 2.18 563819 49 12290 542385 2.22 554675 50 12153 534977 2.22 547130 51 12335 535138 2.25 547473 52 11314 525688 2.11 537002 53 11351 519169 2.14 530520 54 11088 517749 2.10 528837 55 11191 510198 2.15 521389 56 11069 502884 2.15 513953 57 10789 504251 2.09 515040 58 10587 489815 2.12 500402 59 11270 482451 2.28 493721 60 10335 482296 2.10 492631 61 10282 467422 2.15 477704 62 10749 458877 2.29 469626 63 10025 458738 2.14 468763 64 9889 446352 2.17 456241 65 10007 439937 2.22 449944 66 9828 434965 2.21 444793 67 9571 424204 2.21 433775 68 9460 416908 2.22 426368 69 9300 412350 2.21 421650 70 9188 403754 2.23 412942 71 9564 395123 2.36 404687 72 8857 390040 2.22 398897 73 9044 381569 2.32 390613 74 8898 374232 2.32 383130 75 9285 371211 2.44 380496 76 8972 357958 2.45 366930 77 8658 343650 2.46 352308 78 8426 318722 2.58 327148 79 6968 255832 2.65 262800 80 3004 118488 2.47 121492 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 171208 1838202 8.52 2009410 2 158098 1831355 7.95 1989453 3 143442 1851895 7.19 1995337 4 131928 1829014 6.73 1960942 5 128564 1782724 6.73 1911288 6 126750 1711015 6.90 1837765 7 118727 1714123 6.48 1832850 8 112372 1699035 6.20 1811407 9 118849 1725995 6.44 1844844 10 115157 1747007 6.18 1862164 11 113638 1703041 6.26 1816679 12 113667 1712561 6.22 1826228 13 116725 1730049 6.32 1846774 14 109897 1729419 5.97 1839316 15 112413 1753155 6.03 1865568 16 111678 1775886 5.92 1887564 17 107870 1766355 5.76 1874225 18 108371 1787855 5.72 1896226 19 110029 1804644 5.75 1914673 20 105935 1800828 5.56 1906763 21 107624 1813064 5.60 1920688 22 105752 1804239 5.54 1909991 23 101554 1810635 5.31 1912189 24 103098 1811422 5.39 1914520 25 101522 1825604 5.27 1927126 26 99084 1817994 5.17 1917078 27 99612 1824261 5.18 1923873 28 96770 1833375 5.01 1930145 29 95640 1818482 5.00 1914122 30 94290 1821773 4.92 1916063 31 93838 1861691 4.80 1955529 32 89670 1821544 4.69 1911214 33 90368 1814820 4.74 1905188 34 88622 1828031 4.62 1916653 35 84984 1821593 4.46 1906577 36 83452 1814778 4.40 1898230 37 82849 1819736 4.35 1902585 38 79531 1799651 4.23 1879182 39 79149 1799598 4.21 1878747 40 77593 1808145 4.11 1885738 41 74981 1789327 4.02 1864308 42 73432 1768421 3.99 1841853 43 71435 1769607 3.88 1841042 44 69090 1734578 3.83 1803668 45 67221 1717554 3.77 1784775 46 65932 1725893 3.68 1791825 47 63857 1699880 3.62 1763737 48 62824 1696994 3.57 1759818 49 61623 1692864 3.51 1754487 50 58487 1638559 3.45 1697046 51 58861 1617773 3.51 1676634 52 55697 1630139 3.30 1685836 53 53398 1575358 3.28 1628756 54 51941 1552442 3.24 1604383 55 51346 1549779 3.21 1601125 56 48897 1526346 3.10 1575243 57 48231 1518361 3.08 1566592 58 46728 1488083 3.04 1534811 59 46856 1474831 3.08 1521687 60 43840 1448641 2.94 1492481 61 43360 1422503 2.96 1465863 62 42309 1397330 2.94 1439639 63 40851 1388236 2.86 1429087 64 40070 1386809 2.81 1426879 65 39005 1346420 2.82 1385425 66 37906 1316927 2.80 1354833 67 37386 1310645 2.77 1348031 68 36571 1302972 2.73 1339543 69 36356 1278004 2.77 1314360 70 35289 1246143 2.75 1281432 71 35863 1219250 2.86 1255113 72 34382 1206583 2.77 1240965 73 33799 1173189 2.80 1206988 74 32999 1147481 2.80 1180480 75 34643 1119494 3.00 1154137 76 33386 1099257 2.95 1132643 77 32647 1051897 3.01 1084544 78 30724 981472 3.04 1012196 79 24962 797204 3.04 822166 80 10357 355453 2.83 365810 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 143790 101600 58.60 245390 2 134161 82121 62.03 216282 3 123772 75447 62.13 199219 4 110435 68516 61.71 178951 5 108244 65814 62.19 174058 6 106482 63126 62.78 169608 7 110346 68113 61.83 178459 8 104579 59548 63.72 164127 9 102300 57152 64.16 159452 10 103338 57190 64.37 160528 11 103323 57367 64.30 160690 12 99624 54924 64.46 154548 13 98838 52929 65.12 151767 14 98015 52588 65.08 150603 15 97175 51450 65.38 148625 16 95083 50152 65.47 145235 17 92797 50218 64.89 143015 18 88904 46920 65.46 135824 19 87751 46082 65.57 133833 20 86249 45220 65.60 131469 21 84028 44162 65.55 128190 22 82566 42799 65.86 125365 23 81349 41930 65.99 123279 24 79997 40812 66.22 120809 25 79066 40625 66.06 119691 26 76935 40011 65.79 116946 27 74316 38214 66.04 112530 28 73811 37374 66.39 111185 29 71722 36855 66.06 108577 30 69667 35135 66.47 104802 31 70077 34846 66.79 104923 32 68338 33829 66.89 102167 33 66431 32921 66.86 99352 34 66795 32741 67.11 99536 35 64180 31572 67.03 95752 36 62258 30503 67.12 92761 37 60959 29753 67.20 90712 38 60049 29548 67.02 89597 39 58866 28534 67.35 87400 40 58208 28242 67.33 86450 41 55533 26932 67.34 82465 42 53301 25776 67.40 79077 43 52352 25522 67.23 77874 44 51758 25005 67.43 76763 45 50037 23856 67.72 73893 46 48854 23924 67.13 72778 47 48119 23744 66.96 71863 48 46352 22603 67.22 68955 49 44778 22074 66.98 66852 50 43775 21421 67.14 65196 51 41855 20642 66.97 62497 52 40916 20101 67.06 61017 53 40328 19660 67.23 59988 54 38967 19273 66.91 58240 55 38357 19115 66.74 57472 56 37599 18690 66.80 56289 57 37034 18454 66.74 55488 58 35276 17729 66.55 53005 59 34115 17340 66.30 51455 60 32978 16474 66.69 49452 61 32408 16194 66.68 48602 62 31382 15901 66.37 47283 63 30247 15651 65.90 45898 64 29844 15410 65.95 45254 65 28790 14587 66.37 43377 66 28042 14208 66.37 42250 67 26873 13821 66.04 40694 68 26305 13551 66.00 39856 69 25483 13076 66.09 38559 70 24868 13013 65.65 37881 71 24559 13017 65.36 37576 72 23557 12421 65.48 35978 73 22554 12578 64.20 35132 74 21789 11801 64.87 33590 75 21040 11301 65.06 32341 76 19898 10982 64.44 30880 77 19119 10850 63.80 29969 78 17814 10065 63.90 27879 79 15062 8882 62.91 23944 80 10080 6247 61.74 16327 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 32761 406739 7.45 439500 2 18369 351090 4.97 369459 3 16114 327494 4.69 343608 4 11751 304561 3.72 316312 5 12365 287973 4.12 300338 6 13530 281062 4.59 294592 7 9880 276365 3.45 286245 8 10032 281939 3.44 291971 9 9136 263308 3.35 272444 10 8879 258389 3.32 267268 11 8821 253196 3.37 262017 12 7983 252739 3.06 260722 13 7900 244562 3.13 252462 14 7512 238275 3.06 245787 15 7341 242441 2.94 249782 16 6933 235338 2.86 242271 17 6813 225822 2.93 232635 18 6437 225281 2.78 231718 19 6140 218781 2.73 224921 20 5891 213840 2.68 219731 21 5853 212759 2.68 218612 22 5514 204111 2.63 209625 23 5455 204013 2.60 209468 24 5055 201134 2.45 206189 25 4925 193569 2.48 198494 26 4694 188713 2.43 193407 27 4803 189900 2.47 194703 28 4402 182845 2.35 187247 29 4282 183536 2.28 187818 30 3924 175613 2.19 179537 31 4085 173603 2.30 177688 32 3731 169747 2.15 173478 33 3858 169203 2.23 173061 34 3426 160455 2.09 163881 35 3448 158163 2.13 161611 36 3341 154880 2.11 158221 37 3152 148506 2.08 151658 38 3115 146768 2.08 149883 39 2905 145607 1.96 148512 40 2685 141129 1.87 143814 41 2749 138126 1.95 140875 42 2685 135443 1.94 138128 43 2524 131103 1.89 133627 44 2448 126704 1.90 129152 45 2468 124990 1.94 127458 46 2291 121164 1.86 123455 47 2293 119786 1.88 122079 48 2149 114044 1.85 116193 49 2181 111086 1.93 113267 50 2173 107876 1.97 110049 51 2133 107238 1.95 109371 52 2001 103229 1.90 105230 53 1891 100164 1.85 102055 54 1793 98091 1.80 99884 55 1818 95572 1.87 97390 56 1816 93640 1.90 95456 57 1910 92326 2.03 94236 58 1774 88363 1.97 90137 59 1685 85863 1.92 87548 60 1609 84723 1.86 86332 61 1631 80612 1.98 82243 62 1551 78812 1.93 80363 63 1543 77499 1.95 79042 64 1504 75003 1.97 76507 65 1440 72674 1.94 74114 66 1350 71155 1.86 72505 67 1337 68810 1.91 70147 68 1315 66937 1.93 68252 69 1282 64445 1.95 65727 70 1204 63037 1.87 64241 71 1268 60895 2.04 62163 72 1233 60185 2.01 61418 73 1114 57909 1.89 59023 74 1134 56188 1.98 57322 75 1100 54941 1.96 56041 76 1073 52228 2.01 53301 77 1032 49946 2.02 50978 78 966 46850 2.02 47816 79 872 40623 2.10 41495 80 551 27244 1.98 27795 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 108918 1367407 7.38 1476325 2 79963 1121647 6.65 1201610 3 61712 1063766 5.48 1125478 4 51344 997245 4.90 1048589 5 49453 948010 4.96 997463 6 50467 880838 5.42 931305 7 41089 863252 4.54 904341 8 39104 841332 4.44 880436 9 39289 841768 4.46 881057 10 37135 833022 4.27 870157 11 35035 788354 4.25 823389 12 33095 777155 4.08 810250 13 32458 769514 4.05 801972 14 30306 754353 3.86 784659 15 29874 751192 3.82 781066 16 28756 742721 3.73 771477 17 27112 723061 3.61 750173 18 25887 717178 3.48 743065 19 24917 703502 3.42 728419 20 23486 684760 3.32 708246 21 23163 675875 3.31 699038 22 21898 655216 3.23 677114 23 21394 645494 3.21 666888 24 20286 633077 3.10 653363 25 20020 623392 3.11 643412 26 18609 608299 2.97 626908 27 18851 595838 3.07 614689 28 17450 587603 2.88 605053 29 16650 571882 2.83 588532 30 15907 560567 2.76 576474 31 16573 564466 2.85 581039 32 14474 540046 2.61 554520 33 14665 527259 2.71 541924 34 13670 520616 2.56 534286 35 13267 511013 2.53 524280 36 12610 500466 2.46 513076 37 12322 491410 2.45 503732 38 11904 478612 2.43 490516 39 11305 469406 2.35 480711 40 10876 462928 2.30 473804 41 10580 452142 2.29 462722 42 9822 436753 2.20 446575 43 9748 429136 2.22 438884 44 9312 414615 2.20 423927 45 8922 403529 2.16 412451 46 8942 400068 2.19 409010 47 8605 388697 2.17 397302 48 8451 385718 2.14 394169 49 8399 378998 2.17 387397 50 7878 357290 2.16 365168 51 7817 348803 2.19 356620 52 7610 349080 2.13 356690 53 7175 328428 2.14 335603 54 6973 317903 2.15 324876 55 6940 312970 2.17 319910 56 6719 305730 2.15 312449 57 7129 301940 2.31 309069 58 6312 289519 2.13 295831 59 6387 287808 2.17 294195 60 6188 275900 2.19 282088 61 6347 266236 2.33 272583 62 5830 260219 2.19 266049 63 5678 255546 2.17 261224 64 5676 254433 2.18 260109 65 5449 241280 2.21 246729 66 5248 234479 2.19 239727 67 5189 230559 2.20 235748 68 5077 230645 2.15 235722 69 5011 223574 2.19 228585 70 4673 212698 2.15 217371 71 4803 208004 2.26 212807 72 4592 204995 2.19 209587 73 4497 195395 2.25 199892 74 4148 187779 2.16 191927 75 4162 182625 2.23 186787 76 4005 177206 2.21 181211 77 3911 169541 2.25 173452 78 3735 159697 2.29 163432 79 3303 140938 2.29 144241 80 2157 94714 2.23 96871