/gscratch/scrubbed/yaamini/data/Virginica-MBD/2018-10-17-Trimmed-Files//zr2096_5_s1_R1_val_1.fq.gz and /gscratch/scrubbed/yaamini/data/Virginica-MBD/2018-10-17-Trimmed-Files//zr2096_5_s1_R2_val_2.fq.gz
Data processed at 00:20 on 2018-11-07
Alignment
Sequence pairs analysed in total
31,503,281
Paired-end alignments with a unique best hit
16,377,060
Pairs without alignments under any condition
8,772,590
Pairs that did not map uniquely
6,353,631
Genomic sequence context not extractable (edges of chromosomes)
5
Cytosine Methylation
Total C's analysed
427,057,721
Methylated C's in CpG context
36,699,636
Methylated C's in CHG context
2,370,188
Methylated C's in CHH context
12,902,291
Methylated C's in Unknown context
1,275,308
Unmethylated C's in CpG context
17,105,060
Unmethylated C's in CHG context
88,534,839
Unmethylated C's in CHH context
269,445,707
Unmethylated C's in Unknown context
5,454,992
Percentage methylation (CpG context)
68.2%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
4.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4,233,791
original top strand
CTOT
3,962,037
complementary to original top strand
CTOB
3,951,534
complementary to original bottom strand
OB
4,229,693
original bottom strand
Deduplication
Alignments analysed
16,377,055
Unique alignments
15,535,269
Duplicates removed
841,786
Duplicated alignments were found at 694983 different positions