CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 183926 112676 62.01 296602 2 207103 106367 66.07 313470 3 189372 105825 64.15 295197 4 175528 101002 63.48 276530 5 177736 100164 63.96 277900 6 178058 98195 64.45 276253 7 182534 105791 63.31 288325 8 182432 98830 64.86 281262 9 183213 96983 65.39 280196 10 190841 99958 65.63 290799 11 193278 100852 65.71 294130 12 192883 98151 66.28 291034 13 194467 98291 66.43 292758 14 193831 98936 66.21 292767 15 195239 97065 66.79 292304 16 197168 97320 66.95 294488 17 195667 98831 66.44 294498 18 196051 96952 66.91 293003 19 197625 96113 67.28 293738 20 197360 97642 66.90 295002 21 198400 96929 67.18 295329 22 199785 98075 67.07 297860 23 199468 96776 67.33 296244 24 199760 97085 67.29 296845 25 201222 97831 67.29 299053 26 200791 99002 66.98 299793 27 199795 96241 67.49 296036 28 201799 97649 67.39 299448 29 200471 96674 67.47 297145 30 198663 94727 67.71 293390 31 200986 96430 67.58 297416 32 200579 96028 67.62 296607 33 198533 94571 67.73 293104 34 200964 95856 67.71 296820 35 199278 94952 67.73 294230 36 197496 93440 67.88 290936 37 195997 93872 67.62 289869 38 195365 93915 67.53 289280 39 194269 92324 67.79 286593 40 195165 92941 67.74 288106 41 190570 91085 67.66 281655 42 187420 90794 67.37 278214 43 186429 89280 67.62 275709 44 185735 89754 67.42 275489 45 182383 88244 67.39 270627 46 181458 88498 67.22 269956 47 179883 87949 67.16 267832 48 176732 86236 67.21 262968 49 174819 85493 67.16 260312 50 171395 85238 66.79 256633 51 167385 82956 66.86 250341 52 167190 81585 67.21 248775 53 164476 81394 66.90 245870 54 163002 80634 66.90 243636 55 162007 80610 66.77 242617 56 159014 79238 66.74 238252 57 156992 78344 66.71 235336 58 154126 77953 66.41 232079 59 150546 76221 66.39 226767 60 148573 74585 66.58 223158 61 146425 73753 66.50 220178 62 142844 73099 66.15 215943 63 138579 70708 66.21 209287 64 137317 70457 66.09 207774 65 134494 69175 66.04 203669 66 131031 68055 65.82 199086 67 129309 67160 65.82 196469 68 126854 65905 65.81 192759 69 123850 64542 65.74 188392 70 122867 63802 65.82 186669 71 119215 62606 65.57 181821 72 116042 61613 65.32 177655 73 113221 60680 65.11 173901 74 110750 60511 64.67 171261 75 106249 58254 64.59 164503 76 103759 56870 64.60 160629 77 99443 55758 64.07 155201 78 90373 51616 63.65 141989 79 73047 41742 63.64 114789 80 33895 19556 63.41 53451 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 47178 461238 9.28 508416 2 27137 475209 5.40 502346 3 23727 479637 4.71 503364 4 16338 476465 3.32 492803 5 17734 460158 3.71 477892 6 19702 462926 4.08 482628 7 14335 469039 2.97 483374 8 14865 480638 3.00 495503 9 13675 468175 2.84 481850 10 13344 468732 2.77 482076 11 13160 471121 2.72 484281 12 12413 482328 2.51 494741 13 12536 475286 2.57 487822 14 11969 476994 2.45 488963 15 11697 487557 2.34 499254 16 11589 484534 2.34 496123 17 11395 482337 2.31 493732 18 11259 493861 2.23 505120 19 11137 488406 2.23 499543 20 10999 489236 2.20 500235 21 10934 498683 2.15 509617 22 10969 492204 2.18 503173 23 10797 496906 2.13 507703 24 11066 502156 2.16 513222 25 10710 496479 2.11 507189 26 10851 493815 2.15 504666 27 10252 506422 1.98 516674 28 10345 499013 2.03 509358 29 10458 501997 2.04 512455 30 10056 498383 1.98 508439 31 10171 499870 1.99 510041 32 10071 496879 1.99 506950 33 10405 499098 2.04 509503 34 10452 488621 2.09 499073 35 10040 489782 2.01 499822 36 9704 488381 1.95 498085 37 9530 481583 1.94 491113 38 9551 478374 1.96 487925 39 9394 484844 1.90 494238 40 9110 475400 1.88 484510 41 9296 472347 1.93 481643 42 8752 471098 1.82 479850 43 8680 462009 1.84 470689 44 8756 455924 1.88 464680 45 8677 458909 1.86 467586 46 8415 449176 1.84 457591 47 8669 444645 1.91 453314 48 8373 440896 1.86 449269 49 8393 433122 1.90 441515 50 8168 425432 1.88 433600 51 8403 426618 1.93 435021 52 7718 416534 1.82 424252 53 7790 409525 1.87 417315 54 7636 408477 1.84 416113 55 7404 401480 1.81 408884 56 7437 394798 1.85 402235 57 7157 394348 1.78 401505 58 7283 381635 1.87 388918 59 7635 375424 1.99 383059 60 6938 372131 1.83 379069 61 6856 363359 1.85 370215 62 7199 356602 1.98 363801 63 6766 354671 1.87 361437 64 6606 343274 1.89 349880 65 6444 337715 1.87 344159 66 6310 333727 1.86 340037 67 6249 324897 1.89 331146 68 6090 318823 1.87 324913 69 6023 313661 1.88 319684 70 5903 305917 1.89 311820 71 6169 301618 2.00 307787 72 5835 295938 1.93 301773 73 5705 288481 1.94 294186 74 5716 282804 1.98 288520 75 6144 278743 2.16 284887 76 5890 268542 2.15 274432 77 5618 257050 2.14 262668 78 5421 238701 2.22 244122 79 4473 190611 2.29 195084 80 2065 89295 2.26 91360 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 137352 1433332 8.74 1570684 2 129471 1438366 8.26 1567837 3 113788 1454117 7.26 1567905 4 102061 1449375 6.58 1551436 5 104605 1419312 6.86 1523917 6 106768 1361775 7.27 1468543 7 93965 1361116 6.46 1455081 8 91755 1351142 6.36 1442897 9 96410 1367761 6.58 1464171 10 94492 1390170 6.36 1484662 11 93602 1364051 6.42 1457653 12 92079 1375594 6.27 1467673 13 95232 1395249 6.39 1490481 14 90227 1399468 6.06 1489695 15 92247 1421913 6.09 1514160 16 91834 1437323 6.01 1529157 17 89436 1430603 5.88 1520039 18 89607 1451132 5.82 1540739 19 90777 1462237 5.85 1553014 20 87798 1454764 5.69 1542562 21 89342 1463808 5.75 1553150 22 88116 1459566 5.69 1547682 23 84185 1458709 5.46 1542894 24 84497 1459322 5.47 1543819 25 83793 1470596 5.39 1554389 26 81796 1462905 5.30 1544701 27 82405 1466407 5.32 1548812 28 80456 1471511 5.18 1551967 29 78996 1457527 5.14 1536523 30 77271 1455847 5.04 1533118 31 77415 1482409 4.96 1559824 32 73265 1448939 4.81 1522204 33 73854 1440648 4.88 1514502 34 72419 1447052 4.77 1519471 35 68729 1441407 4.55 1510136 36 67465 1433172 4.50 1500637 37 66459 1430495 4.44 1496954 38 63828 1414663 4.32 1478491 39 63251 1410692 4.29 1473943 40 61656 1410741 4.19 1472397 41 59457 1395888 4.09 1455345 42 58027 1375671 4.05 1433698 43 56285 1371300 3.94 1427585 44 53997 1344198 3.86 1398195 45 52843 1325438 3.83 1378281 46 50713 1326020 3.68 1376733 47 49545 1303836 3.66 1353381 48 48114 1300931 3.57 1349045 49 46811 1290759 3.50 1337570 50 44407 1249400 3.43 1293807 51 44559 1231608 3.49 1276167 52 41788 1235498 3.27 1277286 53 40059 1197197 3.24 1237256 54 39152 1178264 3.22 1217416 55 37907 1167028 3.15 1204935 56 35894 1148084 3.03 1183978 57 35276 1139358 3.00 1174634 58 33975 1118162 2.95 1152137 59 34178 1101981 3.01 1136159 60 31574 1082854 2.83 1114428 61 30650 1060810 2.81 1091460 62 30242 1038914 2.83 1069156 63 28837 1028220 2.73 1057057 64 28248 1021080 2.69 1049328 65 27173 992131 2.67 1019304 66 26243 971731 2.63 997974 67 25939 960652 2.63 986591 68 24907 950686 2.55 975593 69 24661 929634 2.58 954295 70 24417 908380 2.62 932797 71 24359 887214 2.67 911573 72 23039 874455 2.57 897494 73 22682 850380 2.60 873062 74 22461 829254 2.64 851715 75 23254 809293 2.79 832547 76 22546 789207 2.78 811753 77 21191 754476 2.73 775667 78 20008 700069 2.78 720077 79 15981 568207 2.74 584188 80 6784 256148 2.58 262932 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 117304 80565 59.28 197869 2 114572 63060 64.50 177632 3 102028 58740 63.46 160768 4 80272 53637 59.95 133909 5 79321 50854 60.93 130175 6 78115 48487 61.70 126602 7 79284 52843 60.01 132127 8 76489 46494 62.19 122983 9 76304 44810 63.00 121114 10 77045 45394 62.93 122439 11 76130 45704 62.49 121834 12 73378 43418 62.83 116796 13 72204 41686 63.40 113890 14 71540 41380 63.35 112920 15 70724 40089 63.82 110813 16 68985 38501 64.18 107486 17 66453 37677 63.82 104130 18 64263 36103 64.03 100366 19 63387 34555 64.72 97942 20 61078 34195 64.11 95273 21 60034 33102 64.46 93136 22 58464 32263 64.44 90727 23 57511 31378 64.70 88889 24 55939 30456 64.75 86395 25 55653 30058 64.93 85711 26 54027 29687 64.54 83714 27 52320 28063 65.09 80383 28 52201 27954 65.13 80155 29 50459 26513 65.56 76972 30 48816 25784 65.44 74600 31 48193 25371 65.51 73564 32 47480 25026 65.48 72506 33 46250 24015 65.82 70265 34 46298 23666 66.17 69964 35 44714 22940 66.09 67654 36 43436 21858 66.52 65294 37 42436 21590 66.28 64026 38 41470 21456 65.90 62926 39 40202 20678 66.03 60880 40 40406 20382 66.47 60788 41 38482 19585 66.27 58067 42 36730 18882 66.05 55612 43 36502 18480 66.39 54982 44 35451 17944 66.39 53395 45 34586 17551 66.34 52137 46 33582 16965 66.44 50547 47 32916 16867 66.12 49783 48 31731 16173 66.24 47904 49 30969 15908 66.06 46877 50 29600 15582 65.51 45182 51 28942 14621 66.44 43563 52 28309 14439 66.22 42748 53 27628 14032 66.32 41660 54 26612 13652 66.09 40264 55 26204 13565 65.89 39769 56 25497 13261 65.79 38758 57 25265 12954 66.11 38219 58 23933 12528 65.64 36461 59 23340 12193 65.69 35533 60 22507 11847 65.51 34354 61 22083 11766 65.24 33849 62 21467 11236 65.64 32703 63 20242 10895 65.01 31137 64 20598 10678 65.86 31276 65 19586 10387 65.35 29973 66 18781 9907 65.47 28688 67 18400 9772 65.31 28172 68 17675 9644 64.70 27319 69 17256 9467 64.57 26723 70 16993 9266 64.71 26259 71 16644 8979 64.96 25623 72 15696 8758 64.19 24454 73 15401 8590 64.19 23991 74 14635 8282 63.86 22917 75 14424 7874 64.69 22298 76 13723 7712 64.02 21435 77 12989 7700 62.78 20689 78 11964 7066 62.87 19030 79 10266 6210 62.31 16476 80 6751 4318 60.99 11069 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 37019 319053 10.40 356072 2 15026 264814 5.37 279840 3 16781 251774 6.25 268555 4 8017 243879 3.18 251896 5 9442 215764 4.19 225206 6 12377 209519 5.58 221896 7 6880 211774 3.15 218654 8 7994 219879 3.51 227873 9 6349 198244 3.10 204593 10 6402 195300 3.17 201702 11 5869 195057 2.92 200926 12 5180 196681 2.57 201861 13 5025 191597 2.56 196622 14 4867 183658 2.58 188525 15 4690 184056 2.48 188746 16 4375 178065 2.40 182440 17 4404 171773 2.50 176177 18 4083 167749 2.38 171832 19 3909 161192 2.37 165101 20 3744 156920 2.33 160664 21 3479 155526 2.19 159005 22 3344 149848 2.18 153192 23 3475 148896 2.28 152371 24 3102 147895 2.05 150997 25 3043 141226 2.11 144269 26 2909 137087 2.08 139996 27 2932 137493 2.09 140425 28 2608 132811 1.93 135419 29 2583 132092 1.92 134675 30 2464 126866 1.91 129330 31 2478 124534 1.95 127012 32 2340 121141 1.90 123481 33 2398 120809 1.95 123207 34 2021 115331 1.72 117352 35 2052 113294 1.78 115346 36 2002 110195 1.78 112197 37 1900 106611 1.75 108511 38 1890 104687 1.77 106577 39 1746 104181 1.65 105927 40 1629 101008 1.59 102637 41 1691 98636 1.69 100327 42 1515 96061 1.55 97576 43 1516 93034 1.60 94550 44 1425 89405 1.57 90830 45 1389 89110 1.53 90499 46 1343 86349 1.53 87692 47 1426 84535 1.66 85961 48 1365 81089 1.66 82454 49 1273 79076 1.58 80349 50 1290 76366 1.66 77656 51 1167 75514 1.52 76681 52 1200 72362 1.63 73562 53 1179 70286 1.65 71465 54 1092 69549 1.55 70641 55 1083 67912 1.57 68995 56 1081 65419 1.63 66500 57 1092 64836 1.66 65928 58 1040 62398 1.64 63438 59 992 60226 1.62 61218 60 913 59419 1.51 60332 61 975 56357 1.70 57332 62 881 55349 1.57 56230 63 891 54692 1.60 55583 64 882 52250 1.66 53132 65 808 50629 1.57 51437 66 802 49837 1.58 50639 67 803 47954 1.65 48757 68 800 46626 1.69 47426 69 756 45245 1.64 46001 70 690 44085 1.54 44775 71 785 42618 1.81 43403 72 678 41856 1.59 42534 73 720 40489 1.75 41209 74 649 39252 1.63 39901 75 604 38269 1.55 38873 76 633 36958 1.68 37591 77 599 35171 1.67 35770 78 573 32932 1.71 33505 79 541 28333 1.87 28874 80 326 18978 1.69 19304 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 86018 1016790 7.80 1102808 2 63672 804999 7.33 868671 3 42852 755078 5.37 797930 4 31996 715360 4.28 747356 5 34779 681867 4.85 716646 6 42543 625454 6.37 667997 7 26379 615449 4.11 641828 8 27320 596899 4.38 624219 9 28230 599269 4.50 627499 10 26515 592323 4.28 618838 11 24489 566719 4.14 591208 12 22176 560188 3.81 582364 13 21495 560511 3.69 582006 14 20073 550731 3.52 570804 15 20050 548719 3.53 568769 16 18922 542012 3.37 560934 17 17828 527282 3.27 545110 18 16400 513679 3.09 530079 19 15862 497056 3.09 512918 20 14946 481514 3.01 496460 21 14562 473203 2.99 487765 22 14071 458709 2.98 472780 23 13416 449813 2.90 463229 24 12896 441450 2.84 454346 25 12479 434238 2.79 446717 26 11613 423802 2.67 435415 27 12001 415244 2.81 427245 28 11042 407288 2.64 418330 29 10580 396735 2.60 407315 30 10046 388465 2.52 398511 31 10360 388477 2.60 398837 32 9217 369727 2.43 378944 33 9545 361961 2.57 371506 34 8804 356466 2.41 365270 35 8458 349631 2.36 358089 36 8103 343790 2.30 351893 37 7900 336476 2.29 344376 38 7463 326752 2.23 334215 39 7413 319638 2.27 327051 40 7008 314785 2.18 321793 41 6726 306678 2.15 313404 42 6496 295854 2.15 302350 43 6418 291614 2.15 298032 44 5989 281464 2.08 287453 45 5975 272668 2.14 278643 46 5809 269860 2.11 275669 47 5628 262317 2.10 267945 48 5587 259712 2.11 265299 49 5391 255658 2.07 261049 50 5122 241013 2.08 246135 51 5077 234281 2.12 239358 52 4997 234871 2.08 239868 53 4819 220341 2.14 225160 54 4615 214893 2.10 219508 55 4658 211323 2.16 215981 56 4346 205338 2.07 209684 57 4696 203405 2.26 208101 58 4294 194768 2.16 199062 59 4217 193061 2.14 197278 60 4128 185801 2.17 189929 61 4186 178303 2.29 182489 62 3790 174430 2.13 178220 63 3901 171238 2.23 175139 64 3733 169608 2.15 173341 65 3598 161332 2.18 164930 66 3437 156424 2.15 159861 67 3454 154199 2.19 157653 68 3309 153233 2.11 156542 69 3283 148546 2.16 151829 70 3270 142835 2.24 146105 71 3260 139317 2.29 142577 72 3124 137472 2.22 140596 73 3005 130648 2.25 133653 74 2839 126011 2.20 128850 75 2843 122023 2.28 124866 76 2771 118246 2.29 121017 77 2579 113219 2.23 115798 78 2379 106169 2.19 108548 79 2032 93634 2.12 95666 80 1309 63321 2.03 64630