CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 283535 117985 70.62 401520 2 320005 110834 74.27 430839 3 296053 109697 72.96 405750 4 278838 102989 73.03 381827 5 280896 101035 73.55 381931 6 281215 98118 74.13 379333 7 289576 105680 73.26 395256 8 290260 96582 75.03 386842 9 289472 93964 75.49 383436 10 301185 96862 75.67 398047 11 306431 97628 75.84 404059 12 302338 94071 76.27 396409 13 308249 94322 76.57 402571 14 308026 94782 76.47 402808 15 309933 93209 76.88 403142 16 311890 93903 76.86 405793 17 312202 93711 76.91 405913 18 311486 92265 77.15 403751 19 312506 92231 77.21 404737 20 315138 92068 77.39 407206 21 317237 91331 77.65 408568 22 317896 92431 77.47 410327 23 318645 91056 77.78 409701 24 318158 91425 77.68 409583 25 323400 92052 77.84 415452 26 322155 92059 77.78 414214 27 319258 89038 78.19 408296 28 324281 91180 78.05 415461 29 321467 89665 78.19 411132 30 319734 88709 78.28 408443 31 323556 90386 78.16 413942 32 324514 89320 78.42 413834 33 320836 87985 78.48 408821 34 326369 89590 78.46 415959 35 322505 88613 78.45 411118 36 319828 86614 78.69 406442 37 320806 87129 78.64 407935 38 320617 87497 78.56 408114 39 318978 85828 78.80 404806 40 320183 87793 78.48 407976 41 313619 85234 78.63 398853 42 310071 83825 78.72 393896 43 308387 83864 78.62 392251 44 308958 84329 78.56 393287 45 303765 82370 78.67 386135 46 303565 82678 78.59 386243 47 302259 83904 78.27 386163 48 296417 81194 78.50 377611 49 296136 82641 78.18 378777 50 291939 81864 78.10 373803 51 283656 78845 78.25 362501 52 283651 79396 78.13 363047 53 281397 79051 78.07 360448 54 277886 77947 78.09 355833 55 277716 78006 78.07 355722 56 274623 77761 77.93 352384 57 273128 76874 78.04 350002 58 267282 75897 77.88 343179 59 263012 75107 77.79 338119 60 257187 73667 77.73 330854 61 256228 74380 77.50 330608 62 249580 72401 77.51 321981 63 244484 71708 77.32 316192 64 243921 71014 77.45 314935 65 239175 69746 77.42 308921 66 233737 68642 77.30 302379 67 231211 68026 77.27 299237 68 228074 67678 77.12 295752 69 223021 65953 77.18 288974 70 221424 66298 76.96 287722 71 216418 65679 76.72 282097 72 211037 64516 76.59 275553 73 208223 63850 76.53 272073 74 203832 63510 76.24 267342 75 196241 61190 76.23 257431 76 192562 60842 75.99 253404 77 184333 60216 75.38 244549 78 169087 56447 74.97 225534 79 136359 45787 74.86 182146 80 64252 21743 74.72 85995 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 60604 575624 9.53 636228 2 33337 591207 5.34 624544 3 29746 600556 4.72 630302 4 20844 596787 3.37 617631 5 23244 574631 3.89 597875 6 25252 582346 4.16 607598 7 19010 589241 3.13 608251 8 19431 600638 3.13 620069 9 18036 586825 2.98 604861 10 17238 585727 2.86 602965 11 17107 591416 2.81 608523 12 16324 602481 2.64 618805 13 16683 593271 2.74 609954 14 15808 594556 2.59 610364 15 15578 614675 2.47 630253 16 15352 608167 2.46 623519 17 15477 601933 2.51 617410 18 15129 619675 2.38 634804 19 14931 611311 2.38 626242 20 14522 611734 2.32 626256 21 14760 625050 2.31 639810 22 14290 616047 2.27 630337 23 14679 623442 2.30 638121 24 14880 628707 2.31 643587 25 14183 622185 2.23 636368 26 14378 618499 2.27 632877 27 13613 635583 2.10 649196 28 13414 627337 2.09 640751 29 14192 633466 2.19 647658 30 13407 628293 2.09 641700 31 13402 632543 2.07 645945 32 13120 627091 2.05 640211 33 13798 634349 2.13 648147 34 13620 620531 2.15 634151 35 12841 622033 2.02 634874 36 12797 624011 2.01 636808 37 12578 611504 2.02 624082 38 12662 611096 2.03 623758 39 12256 622229 1.93 634485 40 12072 610137 1.94 622209 41 12360 606482 2.00 618842 42 11885 608910 1.91 620795 43 11517 597564 1.89 609081 44 11951 588827 1.99 600778 45 11538 595867 1.90 607405 46 11344 583518 1.91 594862 47 11743 577890 1.99 589633 48 11399 576587 1.94 587986 49 11240 566155 1.95 577395 50 11422 556281 2.01 567703 51 11607 558743 2.04 570350 52 10881 546955 1.95 557836 53 10925 541423 1.98 552348 54 10602 539883 1.93 550485 55 10482 533182 1.93 543664 56 10315 526204 1.92 536519 57 10325 527834 1.92 538159 58 9912 512872 1.90 522784 59 10584 505970 2.05 516554 60 9771 506818 1.89 516589 61 9756 490700 1.95 500456 62 10381 481861 2.11 492242 63 9635 482651 1.96 492286 64 9292 467338 1.95 476630 65 9525 462048 2.02 471573 66 9200 457170 1.97 466370 67 8952 448240 1.96 457192 68 8877 442117 1.97 450994 69 8915 435192 2.01 444107 70 8619 425652 1.98 434271 71 9080 419680 2.12 428760 72 8429 415401 1.99 423830 73 8386 406720 2.02 415106 74 8602 398056 2.12 406658 75 8954 395134 2.22 404088 76 8692 379740 2.24 388432 77 8279 365915 2.21 374194 78 8045 340861 2.31 348906 79 6800 274603 2.42 281403 80 3072 129954 2.31 133026 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 152230 1727088 8.10 1879318 2 142063 1719607 7.63 1861670 3 120910 1737027 6.51 1857937 4 108669 1732580 5.90 1841249 5 109494 1694590 6.07 1804084 6 112888 1627933 6.48 1740821 7 97966 1635456 5.65 1733422 8 95533 1615454 5.58 1710987 9 99253 1635932 5.72 1735185 10 98158 1663509 5.57 1761667 11 95643 1633704 5.53 1729347 12 94760 1641420 5.46 1736180 13 98000 1670821 5.54 1768821 14 91843 1670460 5.21 1762303 15 93719 1695114 5.24 1788833 16 92632 1719533 5.11 1812165 17 91019 1708917 5.06 1799936 18 90202 1731682 4.95 1821884 19 91714 1747708 4.99 1839422 20 88598 1734980 4.86 1823578 21 89588 1741307 4.89 1830895 22 87941 1745002 4.80 1832943 23 85551 1748523 4.66 1834074 24 86145 1749387 4.69 1835532 25 84868 1764747 4.59 1849615 26 82652 1753209 4.50 1835861 27 82509 1757280 4.48 1839789 28 80986 1773812 4.37 1854798 29 79357 1749175 4.34 1828532 30 78552 1748779 4.30 1827331 31 78494 1785824 4.21 1864318 32 74475 1751418 4.08 1825893 33 75397 1740071 4.15 1815468 34 74125 1752233 4.06 1826358 35 70584 1743970 3.89 1814554 36 69279 1744660 3.82 1813939 37 69525 1746472 3.83 1815997 38 66547 1724986 3.71 1791533 39 65857 1721593 3.68 1787450 40 64181 1728284 3.58 1792465 41 62373 1710924 3.52 1773297 42 60503 1691579 3.45 1752082 43 58956 1692828 3.37 1751784 44 57354 1662445 3.33 1719799 45 56393 1645798 3.31 1702191 46 54517 1652343 3.19 1706860 47 53062 1625623 3.16 1678685 48 52192 1621503 3.12 1673695 49 51262 1620504 3.07 1671766 50 49076 1571552 3.03 1620628 51 49302 1549872 3.08 1599174 52 46215 1565032 2.87 1611247 53 45118 1514189 2.89 1559307 54 43515 1494222 2.83 1537737 55 42802 1487710 2.80 1530512 56 40976 1463145 2.72 1504121 57 40551 1456339 2.71 1496890 58 39156 1436370 2.65 1475526 59 39756 1417726 2.73 1457482 60 37164 1397699 2.59 1434863 61 36443 1375467 2.58 1411910 62 36195 1350566 2.61 1386761 63 34814 1339117 2.53 1373931 64 33844 1338584 2.47 1372428 65 33479 1302651 2.51 1336130 66 32337 1280788 2.46 1313125 67 31772 1270067 2.44 1301839 68 31199 1258560 2.42 1289759 69 30634 1236054 2.42 1266688 70 29849 1209698 2.41 1239547 71 30366 1187158 2.49 1217524 72 28939 1172888 2.41 1201827 73 29091 1146652 2.47 1175743 74 28412 1122079 2.47 1150491 75 29931 1095802 2.66 1125733 76 28893 1075529 2.62 1104422 77 27659 1030466 2.61 1058125 78 26069 960010 2.64 986079 79 21568 784315 2.68 805883 80 9273 358319 2.52 367592 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 193064 87709 68.76 280773 2 195541 71347 73.27 266888 3 178454 68787 72.18 247241 4 146240 62494 70.06 208734 5 144341 59274 70.89 203615 6 142735 55708 71.93 198443 7 143575 62016 69.84 205591 8 142757 52822 72.99 195579 9 141062 50221 73.75 191283 10 144522 51443 73.75 195965 11 142741 51621 73.44 194362 12 138086 48695 73.93 186781 13 136896 46765 74.54 183661 14 136181 46773 74.43 182954 15 134441 45232 74.83 179673 16 132194 44171 74.95 176365 17 129327 43519 74.82 172846 18 124280 41126 75.14 165406 19 121787 39507 75.51 161294 20 118828 38476 75.54 157304 21 118374 37749 75.82 156123 22 115709 37161 75.69 152870 23 113965 36049 75.97 150014 24 112009 35174 76.10 147183 25 111797 35426 75.94 147223 26 109394 33775 76.41 143169 27 105765 32130 76.70 137895 28 105015 32330 76.46 137345 29 102391 30958 76.78 133349 30 99918 29761 77.05 129679 31 99494 29575 77.09 129069 32 98848 29027 77.30 127875 33 95800 27714 77.56 123514 34 95207 27463 77.61 122670 35 92682 26799 77.57 119481 36 90140 25517 77.94 115657 37 89002 25121 77.99 114123 38 87903 24692 78.07 112595 39 85838 24455 77.83 110293 40 85050 23940 78.03 108990 41 81146 22956 77.95 104102 42 78710 21859 78.26 100569 43 78040 21286 78.57 99326 44 76352 21078 78.37 97430 45 74387 20503 78.39 94890 46 72957 20330 78.21 93287 47 71926 20256 78.03 92182 48 69477 19106 78.43 88583 49 67956 18762 78.36 86718 50 66015 18440 78.17 84455 51 63850 17524 78.46 81374 52 62312 17461 78.11 79773 53 61142 16949 78.30 78091 54 59670 16550 78.29 76220 55 58789 16396 78.19 75185 56 57866 16172 78.16 74038 57 57348 16007 78.18 73355 58 54428 15412 77.93 69840 59 53029 14979 77.97 68008 60 51288 14575 77.87 65863 61 50550 14409 77.82 64959 62 49057 13916 77.90 62973 63 47684 13518 77.91 61202 64 46898 13313 77.89 60211 65 44970 12981 77.60 57951 66 43857 12731 77.50 56588 67 42880 12323 77.68 55203 68 41776 12228 77.36 54004 69 40264 11846 77.27 52110 70 39466 11692 77.15 51158 71 38658 11620 76.89 50278 72 37327 10977 77.28 48304 73 36640 11015 76.89 47655 74 35212 10846 76.45 46058 75 33665 10308 76.56 43973 76 32781 9918 76.77 42699 77 31111 9765 76.11 40876 78 28724 9259 75.62 37983 79 24284 7952 75.33 32236 80 15667 5478 74.09 21145 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 52788 416271 11.25 469059 2 22042 361424 5.75 383466 3 24038 351819 6.40 375857 4 12445 345173 3.48 357618 5 14352 307096 4.46 321448 6 18811 301111 5.88 319922 7 10537 305765 3.33 316302 8 12172 314859 3.72 327031 9 10138 287712 3.40 297850 10 9859 283509 3.36 293368 11 9330 283199 3.19 292529 12 8329 285434 2.84 293763 13 7847 278584 2.74 286431 14 7603 268641 2.75 276244 15 7381 272826 2.63 280207 16 7037 265695 2.58 272732 17 7097 253383 2.72 260480 18 6796 253058 2.62 259854 19 6279 243002 2.52 249281 20 6110 237646 2.51 243756 21 6023 237355 2.47 243378 22 5629 227967 2.41 233596 23 5543 227973 2.37 233516 24 5133 224862 2.23 229995 25 5084 216450 2.29 221534 26 4876 211668 2.25 216544 27 4787 213601 2.19 218388 28 4376 206839 2.07 211215 29 4383 206296 2.08 210679 30 4085 197091 2.03 201176 31 4307 197200 2.14 201507 32 3842 191622 1.97 195464 33 3910 191557 2.00 195467 34 3524 182550 1.89 186074 35 3409 179595 1.86 183004 36 3258 176848 1.81 180106 37 3307 170157 1.91 173464 38 3144 168248 1.83 171392 39 3034 168307 1.77 171341 40 2947 162071 1.79 165018 41 2900 160367 1.78 163267 42 2699 157175 1.69 159874 43 2554 151387 1.66 153941 44 2712 146271 1.82 148983 45 2628 146269 1.76 148897 46 2425 141171 1.69 143596 47 2484 139411 1.75 141895 48 2357 135217 1.71 137574 49 2367 130717 1.78 133084 50 2275 127002 1.76 129277 51 2269 126149 1.77 128418 52 2143 122216 1.72 124359 53 2130 119176 1.76 121306 54 2108 116756 1.77 118864 55 1992 113874 1.72 115866 56 1983 111397 1.75 113380 57 2144 110516 1.90 112660 58 1760 105593 1.64 107353 59 1790 102636 1.71 104426 60 1791 102616 1.72 104407 61 1809 97206 1.83 99015 62 1746 95205 1.80 96951 63 1687 93957 1.76 95644 64 1579 90406 1.72 91985 65 1650 88426 1.83 90076 66 1483 86455 1.69 87938 67 1478 84217 1.72 85695 68 1435 82654 1.71 84089 69 1536 80044 1.88 81580 70 1406 77946 1.77 79352 71 1490 76150 1.92 77640 72 1319 73915 1.75 75234 73 1315 72360 1.78 73675 74 1320 69862 1.85 71182 75 1217 69251 1.73 70468 76 1196 65833 1.78 67029 77 1185 62681 1.86 63866 78 1084 58546 1.82 59630 79 955 50265 1.86 51220 80 625 33018 1.86 33643 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 106792 1279449 7.70 1386241 2 85393 1059360 7.46 1144753 3 58419 1009744 5.47 1068163 4 44072 968475 4.35 1012547 5 47631 930570 4.87 978201 6 58015 855837 6.35 913852 7 36272 851465 4.09 887737 8 37539 824295 4.36 861834 9 38179 830366 4.40 868545 10 36289 824605 4.22 860894 11 33952 793416 4.10 827368 12 30667 785828 3.76 816495 13 30007 788312 3.67 818319 14 27931 775048 3.48 802979 15 27656 777040 3.44 804696 16 25854 768117 3.26 793971 17 24428 745304 3.17 769732 18 23277 731294 3.08 754571 19 22396 716870 3.03 739266 20 20975 696501 2.92 717476 21 20592 686036 2.91 706628 22 19650 667969 2.86 687619 23 19083 659843 2.81 678926 24 18234 646472 2.74 664706 25 17638 638981 2.69 656619 26 16812 624788 2.62 641600 27 17028 613868 2.70 630896 28 15656 606232 2.52 621888 29 14809 591584 2.44 606393 30 14189 579764 2.39 593953 31 14761 580571 2.48 595332 32 13462 558738 2.35 572200 33 13443 546023 2.40 559466 34 12246 542857 2.21 555103 35 12027 531034 2.21 543061 36 11551 522615 2.16 534166 37 11012 514319 2.10 525331 38 10610 500688 2.08 511298 39 10129 491302 2.02 501431 40 9957 484333 2.01 494290 41 9444 473086 1.96 482530 42 9152 461307 1.95 470459 43 8794 454871 1.90 463665 44 8577 440056 1.91 448633 45 8396 429660 1.92 438056 46 8290 426613 1.91 434903 47 7845 414016 1.86 421861 48 7777 410128 1.86 417905 49 7744 404064 1.88 411808 50 7480 383143 1.91 390623 51 7245 375407 1.89 382652 52 7250 375014 1.90 382264 53 6881 355766 1.90 362647 54 6849 346558 1.94 353407 55 6656 341954 1.91 348610 56 6458 332226 1.91 338684 57 6804 328259 2.03 335063 58 6223 317241 1.92 323464 59 6149 314133 1.92 320282 60 5793 302765 1.88 308558 61 6111 293385 2.04 299496 62 5388 287814 1.84 293202 63 5383 281601 1.88 286984 64 5357 280798 1.87 286155 65 5327 267762 1.95 273089 66 5072 261711 1.90 266783 67 5076 257997 1.93 263073 68 4959 255767 1.90 260726 69 4678 248936 1.84 253614 70 4524 240114 1.85 244638 71 4682 233871 1.96 238553 72 4497 229597 1.92 234094 73 4304 220094 1.92 224398 74 4154 213191 1.91 217345 75 4121 208387 1.94 212508 76 4032 202448 1.95 206480 77 3975 193720 2.01 197695 78 3582 180308 1.95 183890 79 3126 158665 1.93 161791 80 2094 105630 1.94 107724