/gscratch/scrubbed/yaamini/data/Virginica-MBD/2018-10-17-Trimmed-Files//zr2096_3_s1_R1_val_1.fq.gz and /gscratch/scrubbed/yaamini/data/Virginica-MBD/2018-10-17-Trimmed-Files//zr2096_3_s1_R2_val_2.fq.gz
Data processed at 00:20 on 2018-11-07
Alignment
Sequence pairs analysed in total
29,548,753
Paired-end alignments with a unique best hit
15,542,349
Pairs without alignments under any condition
7,362,526
Pairs that did not map uniquely
6,643,878
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
424,899,469
Methylated C's in CpG context
47,524,867
Methylated C's in CHG context
2,298,043
Methylated C's in CHH context
10,743,678
Methylated C's in Unknown context
1,088,927
Unmethylated C's in CpG context
13,919,758
Unmethylated C's in CHG context
92,489,635
Unmethylated C's in CHH context
257,923,488
Unmethylated C's in Unknown context
5,034,580
Percentage methylation (CpG context)
77.3%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
4.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3,906,974
original top strand
CTOT
3,851,211
complementary to original top strand
CTOB
3,865,023
complementary to original bottom strand
OB
3,919,139
original bottom strand
Deduplication
Alignments analysed
15,542,347
Unique alignments
14,807,502
Duplicates removed
734,845
Duplicated alignments were found at 572664 different positions