Bismark

Bismark Processing Report

/gscratch/scrubbed/yaamini/data/Virginica-MBD/2018-10-17-Trimmed-Files//zr2096_2_s1_R1_val_1.fq.gz and /gscratch/scrubbed/yaamini/data/Virginica-MBD/2018-10-17-Trimmed-Files//zr2096_2_s1_R2_val_2.fq.gz

Data processed at 00:20 on 2018-11-07


Alignment

Sequence pairs analysed in total 30325606
Paired-end alignments with a unique best hit 15247793
Pairs without alignments under any condition 8686774
Pairs that did not map uniquely 6391039
Genomic sequence context not extractable (edges of chromosomes) 3

Cytosine Methylation

Total C's analysed 375896419
Methylated C's in CpG context 35550304
Methylated C's in CHG context 2282737
Methylated C's in CHH context 16987048
Methylated C's in Unknown context 1561533
Unmethylated C's in CpG context 13991251
Unmethylated C's in CHG context 79870209
Unmethylated C's in CHH context 227214870
Unmethylated C's in Unknown context 5108826
Percentage methylation (CpG context) 71.8%
Percentage methylation (CHG context) 2.8%
Percentage methylation (CHH context) 7.0%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3850832 original top strand
CTOT 3774008 complementary to original top strand
CTOB 3773813 complementary to original bottom strand
OB 3849137 original bottom strand