zr2096_1_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7278446 lines in total Total number of methylation call strings processed: 14556892 Final Cytosine Methylation Report ================================= Total number of C's analysed: 122983889 Total methylated C's in CpG context: 10626266 Total methylated C's in CHG context: 804585 Total methylated C's in CHH context: 6097998 Total C to T conversions in CpG context: 4577584 Total C to T conversions in CHG context: 24001874 Total C to T conversions in CHH context: 76875582 C methylated in CpG context: 69.9% C methylated in CHG context: 3.2% C methylated in CHH context: 7.3%