CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 102445 59847 63.12 162292 2 116354 54391 68.14 170745 3 108467 53409 67.01 161876 4 100077 50490 66.47 150567 5 98816 49823 66.48 148639 6 99586 48186 67.39 147772 7 104591 50270 67.54 154861 8 102466 48286 67.97 150752 9 103153 46873 68.76 150026 10 107058 47469 69.28 154527 11 108717 49622 68.66 158339 12 108656 48268 69.24 156924 13 108308 47423 69.55 155731 14 108820 47721 69.52 156541 15 110233 46968 70.12 157201 16 109809 47036 70.01 156845 17 109686 47571 69.75 157257 18 110120 46292 70.40 156412 19 111432 46597 70.51 158029 20 110886 46831 70.31 157717 21 111370 47119 70.27 158489 22 112148 46946 70.49 159094 23 110697 46923 70.23 157620 24 111858 45862 70.92 157720 25 112769 47093 70.54 159862 26 112468 47623 70.25 160091 27 112022 46080 70.85 158102 28 113592 46276 71.05 159868 29 112566 46282 70.86 158848 30 111893 45781 70.96 157674 31 113895 46135 71.17 160030 32 113395 46204 71.05 159599 33 113397 45189 71.51 158586 34 115079 45528 71.65 160607 35 112936 45574 71.25 158510 36 112678 44950 71.48 157628 37 112722 44726 71.59 157448 38 112087 45246 71.24 157333 39 112775 44341 71.78 157116 40 113970 44878 71.75 158848 41 111094 44650 71.33 155744 42 108791 43380 71.49 152171 43 108438 43227 71.50 151665 44 108694 43618 71.36 152312 45 107502 42347 71.74 149849 46 107363 42680 71.55 150043 47 107304 42907 71.44 150211 48 105060 42033 71.42 147093 49 104332 42122 71.24 146454 50 102782 41864 71.06 144646 51 100477 41168 70.94 141645 52 100776 40749 71.21 141525 53 99433 39999 71.31 139432 54 97799 39664 71.15 137463 55 98433 39393 71.42 137826 56 96978 39517 71.05 136495 57 97151 39079 71.31 136230 58 93833 38851 70.72 132684 59 92646 38303 70.75 130949 60 91038 37624 70.76 128662 61 90724 36806 71.14 127530 62 88849 37007 70.60 125856 63 87601 36419 70.63 124020 64 86160 36175 70.43 122335 65 85181 35692 70.47 120873 66 83328 34896 70.48 118224 67 82697 34755 70.41 117452 68 81257 33922 70.55 115179 69 79874 33995 70.15 113869 70 79014 33462 70.25 112476 71 77943 33027 70.24 110970 72 76451 32396 70.24 108847 73 75513 32334 70.02 107847 74 73298 32332 69.39 105630 75 71129 31388 69.38 102517 76 69687 31004 69.21 100691 77 67167 29988 69.13 97155 78 61715 28638 68.30 90353 79 50367 23255 68.41 73622 80 23884 11235 68.01 35119 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 33313 236363 12.35 269676 2 20935 246655 7.82 267590 3 16987 242866 6.54 259853 4 12301 240882 4.86 253183 5 12508 231257 5.13 243765 6 13680 232654 5.55 246334 7 10950 234499 4.46 245449 8 10668 242678 4.21 253346 9 10369 234377 4.24 244746 10 9932 235311 4.05 245243 11 10022 237566 4.05 247588 12 9382 241877 3.73 251259 13 9659 238508 3.89 248167 14 9231 240653 3.69 249884 15 9441 245140 3.71 254581 16 9042 241982 3.60 251024 17 8769 242122 3.50 250891 18 9205 248068 3.58 257273 19 8812 244453 3.48 253265 20 8749 245360 3.44 254109 21 8750 249796 3.38 258546 22 8765 245767 3.44 254532 23 8195 248902 3.19 257097 24 8464 251807 3.25 260271 25 8256 248901 3.21 257157 26 8544 248354 3.33 256898 27 8143 253929 3.11 262072 28 8362 250931 3.22 259293 29 8284 254934 3.15 263218 30 8109 251063 3.13 259172 31 8136 253847 3.11 261983 32 8086 253525 3.09 261611 33 8789 254747 3.34 263536 34 8167 248859 3.18 257026 35 8082 249957 3.13 258039 36 7469 250706 2.89 258175 37 7657 246760 3.01 254417 38 7445 247215 2.92 254660 39 7307 250222 2.84 257529 40 7185 246840 2.83 254025 41 7271 246215 2.87 253486 42 7054 246443 2.78 253497 43 6829 241539 2.75 248368 44 6755 238776 2.75 245531 45 6733 242469 2.70 249202 46 6594 236562 2.71 243156 47 6538 235088 2.71 241626 48 6388 233427 2.66 239815 49 6237 230334 2.64 236571 50 6170 227287 2.64 233457 51 6149 228266 2.62 234415 52 5779 223434 2.52 229213 53 5580 221707 2.46 227287 54 5274 220892 2.33 226166 55 5432 218418 2.43 223850 56 5387 215787 2.44 221174 57 5201 217031 2.34 222232 58 5027 211579 2.32 216606 59 5274 208720 2.46 213994 60 4662 208665 2.19 213327 61 4695 201842 2.27 206537 62 4782 199349 2.34 204131 63 4469 198981 2.20 203450 64 4288 194986 2.15 199274 65 4225 192043 2.15 196268 66 4143 190995 2.12 195138 67 3842 187665 2.01 191507 68 3932 184069 2.09 188001 69 3788 181830 2.04 185618 70 3593 178911 1.97 182504 71 3868 175555 2.16 179423 72 3545 173637 2.00 177182 73 3700 170184 2.13 173884 74 3704 168103 2.16 171807 75 3821 167247 2.23 171068 76 3779 161075 2.29 164854 77 3654 154949 2.30 158603 78 3424 145423 2.30 148847 79 2859 117972 2.37 120831 80 1277 55736 2.24 57013 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 129075 795615 13.96 924690 2 118853 803536 12.89 922389 3 117245 812957 12.60 930202 4 108320 807182 11.83 915502 5 104471 789994 11.68 894465 6 106382 759446 12.29 865828 7 101154 760035 11.75 861189 8 96962 755699 11.37 852661 9 101814 764122 11.76 865936 10 102086 773130 11.66 875216 11 99341 762124 11.53 861465 12 101971 769834 11.70 871805 13 101308 781304 11.48 882612 14 98227 790437 11.05 888664 15 103460 799157 11.46 902617 16 104002 806993 11.42 910995 17 98354 810754 10.82 909108 18 100669 818141 10.96 918810 19 100740 824217 10.89 924957 20 98246 822973 10.66 921219 21 102437 823558 11.06 925995 22 100847 819322 10.96 920169 23 94577 820513 10.34 915090 24 98027 816507 10.72 914534 25 96209 822595 10.47 918804 26 93514 819634 10.24 913148 27 94619 822798 10.31 917417 28 94486 823955 10.29 918441 29 91156 821553 9.99 912709 30 91712 820188 10.06 911900 31 88772 835659 9.60 924431 32 83911 820270 9.28 904181 33 84934 811435 9.48 896369 34 84686 814761 9.42 899447 35 79726 814322 8.92 894048 36 79650 812184 8.93 891834 37 80175 808863 9.02 889038 38 75639 801891 8.62 877530 39 75099 803023 8.55 878122 40 73724 803480 8.40 877204 41 70414 797372 8.11 867786 42 68747 787787 8.03 856534 43 67138 782356 7.90 849494 44 63020 767141 7.59 830161 45 61048 760677 7.43 821725 46 59979 759334 7.32 819313 47 56831 750277 7.04 807108 48 55381 748213 6.89 803594 49 53414 742722 6.71 796136 50 49652 722111 6.43 771763 51 48796 711659 6.42 760455 52 46926 713566 6.17 760492 53 44358 694106 6.01 738464 54 42437 685631 5.83 728068 55 41597 679868 5.77 721465 56 38057 669302 5.38 707359 57 36139 667680 5.13 703819 58 34715 652779 5.05 687494 59 33514 647840 4.92 681354 60 30930 635603 4.64 666533 61 29728 624106 4.55 653834 62 27841 614422 4.33 642263 63 26499 609987 4.16 636486 64 25270 607755 3.99 633025 65 24077 590810 3.92 614887 66 23412 579712 3.88 603124 67 22811 576461 3.81 599272 68 21179 573842 3.56 595021 69 20319 564749 3.47 585068 70 20023 551484 3.50 571507 71 19834 541416 3.53 561250 72 18369 537657 3.30 556026 73 18413 522407 3.40 540820 74 17168 512540 3.24 529708 75 17624 501213 3.40 518837 76 17026 492072 3.34 509098 77 15992 472474 3.27 488466 78 14890 441192 3.26 456082 79 12223 362308 3.26 374531 80 5315 165254 3.12 170569 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 71240 43373 62.16 114613 2 76369 35283 68.40 111652 3 69002 33483 67.33 102485 4 53950 31003 63.51 84953 5 52876 29452 64.23 82328 6 52580 27895 65.34 80475 7 54628 29924 64.61 84552 8 53396 26902 66.50 80298 9 53115 25729 67.37 78844 10 53684 26179 67.22 79863 11 53432 26694 66.68 80126 12 51931 25530 67.04 77461 13 51315 24617 67.58 75932 14 50784 24478 67.48 75262 15 50793 23401 68.46 74194 16 49901 22971 68.48 72872 17 48564 22778 68.07 71342 18 47138 21205 68.97 68343 19 46066 20688 69.01 66754 20 45569 20619 68.85 66188 21 44546 20149 68.86 64695 22 44030 19495 69.31 63525 23 42663 19341 68.81 62004 24 42832 18733 69.57 61565 25 42254 19096 68.87 61350 26 41504 18589 69.07 60093 27 40338 17439 69.82 57777 28 40446 17329 70.01 57775 29 39533 16897 70.06 56430 30 38636 16436 70.16 55072 31 38799 16082 70.70 54881 32 37843 15986 70.30 53829 33 37066 15372 70.69 52438 34 37124 15185 70.97 52309 35 35650 14685 70.83 50335 36 35188 14568 70.72 49756 37 34747 13940 71.37 48687 38 34283 13864 71.20 48147 39 33814 13632 71.27 47446 40 33242 13359 71.33 46601 41 32000 12788 71.45 44788 42 31075 12499 71.32 43574 43 30382 12114 71.49 42496 44 30137 11908 71.68 42045 45 29430 11537 71.84 40967 46 28600 11518 71.29 40118 47 28562 11436 71.41 39998 48 27626 10806 71.88 38432 49 26852 10826 71.27 37678 50 26440 10520 71.54 36960 51 25379 10165 71.40 35544 52 25163 9995 71.57 35158 53 24338 9583 71.75 33921 54 24047 9604 71.46 33651 55 23645 9381 71.60 33026 56 23415 9351 71.46 32766 57 22707 9217 71.13 31924 58 21851 8854 71.16 30705 59 21455 8663 71.24 30118 60 21019 8355 71.56 29374 61 20607 8240 71.44 28847 62 20087 8258 70.87 28345 63 19429 7920 71.04 27349 64 19076 7768 71.06 26844 65 18168 7600 70.51 25768 66 18018 7467 70.70 25485 67 17575 7289 70.68 24864 68 17396 7163 70.83 24559 69 16825 6944 70.79 23769 70 16677 6771 71.12 23448 71 15943 6642 70.59 22585 72 15662 6618 70.30 22280 73 15192 6269 70.79 21461 74 14661 6188 70.32 20849 75 14014 6039 69.88 20053 76 13871 5839 70.38 19710 77 13200 5724 69.75 18924 78 12078 5374 69.21 17452 79 10198 4734 68.30 14932 80 6835 3206 68.07 10041 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 28777 171433 14.37 200210 2 11298 154195 6.83 165493 3 12110 148054 7.56 160164 4 5962 149194 3.84 155156 5 6810 130595 4.96 137405 6 9151 127874 6.68 137025 7 5061 130084 3.74 135145 8 5845 136983 4.09 142828 9 4737 123150 3.70 127887 10 4714 122154 3.72 126868 11 4450 122599 3.50 127049 12 3976 124076 3.10 128052 13 3785 121407 3.02 125192 14 3616 117115 3.00 120731 15 3483 118044 2.87 121527 16 3337 115189 2.82 118526 17 3343 111355 2.91 114698 18 3293 110304 2.90 113597 19 2850 106662 2.60 109512 20 2811 104418 2.62 107229 21 2654 103472 2.50 106126 22 2506 100111 2.44 102617 23 2460 100632 2.39 103092 24 2293 99197 2.26 101490 25 2329 96337 2.36 98666 26 2319 94561 2.39 96880 27 2193 94850 2.26 97043 28 2071 91941 2.20 94012 29 2023 92449 2.14 94472 30 1922 89384 2.11 91306 31 1975 88355 2.19 90330 32 1772 86361 2.01 88133 33 1902 86040 2.16 87942 34 1642 82307 1.96 83949 35 1648 81288 1.99 82936 36 1583 80262 1.93 81845 37 1593 77532 2.01 79125 38 1504 76867 1.92 78371 39 1383 76495 1.78 77878 40 1310 74208 1.73 75518 41 1317 73209 1.77 74526 42 1238 71584 1.70 72822 43 1235 70237 1.73 71472 44 1198 67784 1.74 68982 45 1133 66910 1.67 68043 46 1143 65492 1.72 66635 47 1112 64026 1.71 65138 48 1102 62495 1.73 63597 49 1128 61145 1.81 62273 50 1037 59416 1.72 60453 51 1019 58594 1.71 59613 52 937 56951 1.62 57888 53 987 55764 1.74 56751 54 921 54904 1.65 55825 55 928 53813 1.70 54741 56 875 51991 1.66 52866 57 1000 51927 1.89 52927 58 942 50105 1.85 51047 59 872 49212 1.74 50084 60 842 48485 1.71 49327 61 887 45628 1.91 46515 62 779 45758 1.67 46537 63 837 44931 1.83 45768 64 826 43067 1.88 43893 65 735 42398 1.70 43133 66 701 41558 1.66 42259 67 710 40476 1.72 41186 68 710 39540 1.76 40250 69 715 38644 1.82 39359 70 662 37379 1.74 38041 71 695 36611 1.86 37306 72 650 35982 1.77 36632 73 624 35345 1.73 35969 74 633 34032 1.83 34665 75 635 33289 1.87 33924 76 578 32003 1.77 32581 77 577 30849 1.84 31426 78 516 28314 1.79 28830 79 471 24446 1.89 24917 80 315 16522 1.87 16837 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 75372 576176 11.57 651548 2 52840 485803 9.81 538643 3 36301 468139 7.20 504440 4 27358 448772 5.75 476130 5 28702 432338 6.23 461040 6 35602 397780 8.21 433382 7 22097 396190 5.28 418287 8 23487 385115 5.75 408602 9 24316 388269 5.89 412585 10 22786 384233 5.60 407019 11 20857 372232 5.31 393089 12 19455 369871 5.00 389326 13 18535 372218 4.74 390753 14 16919 369306 4.38 386225 15 17710 368185 4.59 385895 16 16481 364876 4.32 381357 17 15079 357863 4.04 372942 18 14492 350830 3.97 365322 19 13370 341888 3.76 355258 20 12624 334139 3.64 346763 21 12533 329479 3.66 342012 22 11709 321298 3.52 333007 23 11497 317405 3.50 328902 24 11220 312000 3.47 323220 25 10689 306833 3.37 317522 26 10284 302442 3.29 312726 27 10340 297643 3.36 307983 28 9627 293599 3.17 303226 29 8997 288113 3.03 297110 30 8744 283262 2.99 292006 31 8580 285423 2.92 294003 32 7789 275125 2.75 282914 33 7997 268892 2.89 276889 34 7420 267641 2.70 275061 35 7032 262750 2.61 269782 36 6908 259143 2.60 266051 37 6935 254442 2.65 261377 38 6453 247704 2.54 254157 39 6341 244529 2.53 250870 40 6089 241177 2.46 247266 41 5983 236546 2.47 242529 42 5488 229983 2.33 235471 43 5557 226439 2.40 231996 44 5209 220108 2.31 225317 45 5147 215460 2.33 220607 46 5061 213546 2.32 218607 47 5184 208027 2.43 213211 48 5056 206092 2.39 211148 49 4892 203815 2.34 208707 50 4597 194772 2.31 199369 51 4366 189555 2.25 193921 52 4309 189406 2.22 193715 53 4289 180415 2.32 184704 54 4062 176330 2.25 180392 55 4232 173253 2.38 177485 56 3873 169742 2.23 173615 57 4172 167096 2.44 171268 58 3903 162260 2.35 166163 59 3837 160887 2.33 164724 60 3610 155520 2.27 159130 61 3730 150380 2.42 154110 62 3330 148478 2.19 151808 63 3455 146212 2.31 149667 64 3296 144912 2.22 148208 65 3185 139462 2.23 142647 66 3208 135268 2.32 138476 67 3081 133470 2.26 136551 68 3104 132866 2.28 135970 69 3000 129225 2.27 132225 70 2992 125653 2.33 128645 71 3013 122003 2.41 125016 72 2730 121128 2.20 123858 73 2710 115676 2.29 118386 74 2487 112162 2.17 114649 75 2516 109072 2.25 111588 76 2519 106428 2.31 108947 77 2275 102201 2.18 104476 78 2200 95095 2.26 97295 79 1866 84491 2.16 86357 80 1221 56979 2.10 58200