zr2096_10_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8959633 lines in total Total number of methylation call strings processed: 17919266 Final Cytosine Methylation Report ================================= Total number of C's analysed: 162550688 Total methylated C's in CpG context: 15623053 Total methylated C's in CHG context: 964793 Total methylated C's in CHH context: 4172504 Total C to T conversions in CpG context: 6899821 Total C to T conversions in CHG context: 34745591 Total C to T conversions in CHH context: 100144926 C methylated in CpG context: 69.4% C methylated in CHG context: 2.7% C methylated in CHH context: 4.0%